Query 024859
Match_columns 261
No_of_seqs 143 out of 262
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 15:39:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cuf_A FLJ21616 protein; homeo 99.8 1.7E-19 5.7E-24 139.2 8.4 75 4-80 4-83 (95)
2 2da2_A Alpha-fetoprotein enhan 99.8 8.7E-19 3E-23 127.6 7.4 66 2-79 2-67 (70)
3 2dmt_A Homeobox protein BARH-l 99.8 9.2E-19 3.2E-23 131.1 7.5 62 6-79 16-77 (80)
4 2cra_A Homeobox protein HOX-B1 99.8 8.7E-19 3E-23 128.0 7.2 64 4-79 4-67 (70)
5 2l7z_A Homeobox protein HOX-A1 99.8 1.3E-18 4.3E-23 128.5 7.8 68 1-80 1-68 (73)
6 1nk2_P Homeobox protein VND; h 99.8 1.1E-18 3.7E-23 129.8 7.5 66 2-79 4-69 (77)
7 2dmu_A Homeobox protein goosec 99.8 1.4E-18 4.8E-23 126.7 7.8 63 5-79 5-67 (70)
8 2djn_A Homeobox protein DLX-5; 99.8 9.6E-19 3.3E-23 127.8 6.3 65 3-79 3-67 (70)
9 2da3_A Alpha-fetoprotein enhan 99.8 8.6E-19 2.9E-23 130.1 6.1 64 4-79 14-77 (80)
10 2hdd_A Protein (engrailed home 99.7 1.1E-18 3.8E-23 124.2 6.1 59 7-77 3-61 (61)
11 2h1k_A IPF-1, pancreatic and d 99.7 1.4E-18 4.7E-23 124.7 6.5 61 6-78 2-62 (63)
12 2e1o_A Homeobox protein PRH; D 99.7 2.5E-18 8.5E-23 125.6 8.0 63 5-79 5-67 (70)
13 1ig7_A Homeotic protein MSX-1; 99.7 1.9E-18 6.5E-23 121.4 6.6 57 8-76 1-57 (58)
14 2da1_A Alpha-fetoprotein enhan 99.7 1.7E-18 6E-23 126.0 6.6 64 4-79 4-67 (70)
15 2dms_A Homeobox protein OTX2; 99.7 4.9E-18 1.7E-22 126.9 9.0 65 4-80 4-68 (80)
16 3a01_A Homeodomain-containing 99.7 2.1E-18 7.3E-23 133.2 6.9 67 2-80 12-78 (93)
17 2kt0_A Nanog, homeobox protein 99.7 2.5E-18 8.7E-23 129.1 6.9 63 4-78 19-81 (84)
18 2vi6_A Homeobox protein nanog; 99.7 1.9E-18 6.5E-23 123.3 5.8 59 7-77 3-61 (62)
19 2cue_A Paired box protein PAX6 99.7 3.5E-18 1.2E-22 127.9 6.9 64 4-79 4-67 (80)
20 3a02_A Homeobox protein arista 99.7 2.4E-18 8.3E-23 122.1 5.6 58 9-78 1-58 (60)
21 2dmq_A LIM/homeobox protein LH 99.7 5.2E-18 1.8E-22 126.3 7.5 63 5-79 5-67 (80)
22 2ly9_A Zinc fingers and homeob 99.7 7E-18 2.4E-22 124.0 7.7 64 5-80 4-67 (74)
23 1jgg_A Segmentation protein EV 99.7 4.4E-18 1.5E-22 120.8 6.4 58 8-77 2-59 (60)
24 2da4_A Hypothetical protein DK 99.7 2.9E-18 9.8E-23 128.2 5.5 63 6-80 7-73 (80)
25 1ahd_P Antennapedia protein mu 99.7 4.8E-18 1.6E-22 123.9 6.3 61 7-79 2-62 (68)
26 1bw5_A ISL-1HD, insulin gene e 99.7 4.5E-18 1.5E-22 122.8 6.0 61 7-79 3-63 (66)
27 2da5_A Zinc fingers and homeob 99.7 8.5E-18 2.9E-22 124.8 7.5 65 4-80 4-68 (75)
28 2hi3_A Homeodomain-only protei 99.7 7.6E-18 2.6E-22 124.1 6.9 62 7-79 2-63 (73)
29 3rkq_A Homeobox protein NKX-2. 99.7 6.5E-18 2.2E-22 117.8 6.1 57 7-75 2-58 (58)
30 3a03_A T-cell leukemia homeobo 99.7 6.4E-18 2.2E-22 118.8 6.0 55 12-78 2-56 (56)
31 1ftt_A TTF-1 HD, thyroid trans 99.7 8.2E-18 2.8E-22 122.4 6.7 61 7-79 2-62 (68)
32 2ecc_A Homeobox and leucine zi 99.7 9.7E-18 3.3E-22 127.5 7.2 62 6-79 2-63 (76)
33 1b8i_A Ultrabithorax, protein 99.7 7.2E-18 2.5E-22 126.9 6.2 61 6-78 19-79 (81)
34 1puf_A HOX-1.7, homeobox prote 99.7 1.1E-17 3.6E-22 124.5 7.0 61 6-78 12-72 (77)
35 1wh5_A ZF-HD homeobox family p 99.7 6.8E-18 2.3E-22 127.7 6.0 61 6-76 16-78 (80)
36 2k40_A Homeobox expressed in E 99.7 1E-17 3.5E-22 121.2 6.6 61 7-79 1-61 (67)
37 2r5y_A Homeotic protein sex co 99.7 6.6E-18 2.3E-22 128.4 5.9 61 6-78 27-87 (88)
38 1zq3_P PRD-4, homeotic bicoid 99.7 8.6E-18 2.9E-22 122.3 6.0 60 8-79 3-62 (68)
39 1fjl_A Paired protein; DNA-bin 99.7 1.2E-17 4.3E-22 125.0 6.9 62 6-79 17-78 (81)
40 2m0c_A Homeobox protein arista 99.7 2.3E-17 7.9E-22 120.8 7.9 63 5-79 7-69 (75)
41 1yz8_P Pituitary homeobox 2; D 99.7 4.3E-18 1.5E-22 123.7 3.7 61 7-79 3-63 (68)
42 1wh7_A ZF-HD homeobox family p 99.7 9E-18 3.1E-22 127.5 5.3 60 6-76 16-78 (80)
43 1uhs_A HOP, homeodomain only p 99.7 2E-17 6.9E-22 121.4 6.9 61 8-79 2-62 (72)
44 1b72_A Protein (homeobox prote 99.7 1.6E-17 5.4E-22 128.6 5.8 62 6-79 33-94 (97)
45 1akh_A Protein (mating-type pr 99.7 1.6E-17 5.5E-22 117.8 5.3 57 7-75 5-61 (61)
46 2ecb_A Zinc fingers and homeob 99.7 7.1E-17 2.4E-21 125.4 9.4 62 7-80 11-72 (89)
47 1x2n_A Homeobox protein pknox1 99.7 5.1E-17 1.7E-21 119.3 8.0 67 3-79 3-70 (73)
48 3nar_A ZHX1, zinc fingers and 99.7 2.3E-17 7.9E-22 127.6 6.0 62 6-79 24-85 (96)
49 2dn0_A Zinc fingers and homeob 99.7 3.2E-17 1.1E-21 121.6 6.2 59 9-79 10-68 (76)
50 2da6_A Hepatocyte nuclear fact 99.7 9.2E-17 3.1E-21 128.3 7.0 76 2-79 1-87 (102)
51 1puf_B PRE-B-cell leukemia tra 99.7 1E-16 3.4E-21 117.7 6.6 63 8-80 2-65 (73)
52 1du6_A PBX1, homeobox protein 99.7 4.5E-17 1.6E-21 116.6 4.4 61 6-76 2-63 (64)
53 1au7_A Protein PIT-1, GHF-1; c 99.7 8.4E-17 2.9E-21 133.4 6.1 64 2-77 82-145 (146)
54 2dmp_A Zinc fingers and homeob 99.6 2.3E-16 7.9E-21 121.0 7.3 61 8-80 14-74 (89)
55 2dmn_A Homeobox protein TGIF2L 99.6 5.2E-16 1.8E-20 117.5 8.9 67 4-80 4-71 (83)
56 1b72_B Protein (PBX1); homeodo 99.6 1.5E-16 5.2E-21 120.1 6.0 63 8-80 2-65 (87)
57 1k61_A Mating-type protein alp 99.6 2E-16 7E-21 111.9 6.2 57 11-77 2-59 (60)
58 2cqx_A LAG1 longevity assuranc 99.6 6.4E-17 2.2E-21 120.1 3.5 60 7-78 8-68 (72)
59 2l9r_A Homeobox protein NKX-3. 99.6 2.9E-16 9.8E-21 116.6 6.7 65 1-80 1-65 (69)
60 3d1n_I POU domain, class 6, tr 99.6 2.8E-16 9.7E-21 130.1 7.1 63 2-76 88-150 (151)
61 3nau_A Zinc fingers and homeob 99.6 1.9E-16 6.4E-21 118.0 5.4 52 14-77 11-62 (66)
62 2e19_A Transcription factor 8; 99.6 3.2E-16 1.1E-20 114.2 5.7 60 6-77 2-61 (64)
63 1e3o_C Octamer-binding transcr 99.6 2.8E-16 9.4E-21 131.7 6.1 60 6-77 100-159 (160)
64 2xsd_C POU domain, class 3, tr 99.6 2.5E-16 8.7E-21 133.0 5.9 62 6-79 98-159 (164)
65 1lfb_A Liver transcription fac 99.6 3.1E-16 1.1E-20 123.6 4.6 74 4-79 6-90 (99)
66 1mnm_C Protein (MAT alpha-2 tr 99.6 7.8E-16 2.7E-20 116.8 6.4 60 7-76 27-87 (87)
67 1le8_B Mating-type protein alp 99.6 9.1E-16 3.1E-20 115.8 6.5 62 8-79 3-65 (83)
68 2d5v_A Hepatocyte nuclear fact 99.6 5.7E-16 1.9E-20 129.3 5.4 63 5-79 95-157 (164)
69 1x2m_A LAG1 longevity assuranc 99.6 6.5E-16 2.2E-20 113.9 4.9 52 16-78 9-60 (64)
70 3l1p_A POU domain, class 5, tr 99.5 2.8E-15 9.5E-20 125.2 5.2 60 6-77 95-154 (155)
71 1wi3_A DNA-binding protein SAT 99.5 6.2E-15 2.1E-19 111.2 6.4 60 5-75 5-64 (71)
72 3k2a_A Homeobox protein MEIS2; 99.5 2.7E-14 9.3E-19 104.3 5.7 57 13-79 4-61 (67)
73 1ic8_A Hepatocyte nuclear fact 99.4 4.7E-14 1.6E-18 123.0 2.5 69 6-76 114-193 (194)
74 2h8r_A Hepatocyte nuclear fact 99.3 7.2E-13 2.5E-17 118.1 6.4 67 6-74 141-218 (221)
75 1mh3_A Maltose binding-A1 home 99.3 1.7E-12 5.7E-17 116.8 4.6 54 10-75 368-421 (421)
76 2lk2_A Homeobox protein TGIF1; 99.2 1.5E-11 5.1E-16 96.1 5.2 59 11-79 9-68 (89)
77 2da7_A Zinc finger homeobox pr 99.1 6.5E-11 2.2E-15 89.4 6.1 48 16-75 14-61 (71)
78 2nzz_A Penetratin conjugated G 98.6 7.5E-09 2.6E-13 69.2 0.4 19 61-79 1-19 (37)
79 3h8z_A FragIle X mental retard 96.2 0.036 1.2E-06 45.6 9.7 95 141-256 4-100 (128)
80 3ask_A E3 ubiquitin-protein li 96.1 0.018 6E-07 51.5 8.3 93 145-240 9-109 (226)
81 3fdr_A Tudor and KH domain-con 95.9 0.0067 2.3E-07 45.8 4.0 56 146-208 35-94 (94)
82 2ro0_A Histone acetyltransfera 95.7 0.012 4.2E-07 45.8 4.8 43 151-196 34-76 (92)
83 2eko_A Histone acetyltransfera 94.9 0.015 5.3E-07 44.9 3.0 46 151-199 25-70 (87)
84 4hae_A CDY-like 2, chromodomai 94.4 0.031 1E-06 42.3 3.4 49 141-192 12-60 (81)
85 2rnz_A Histone acetyltransfera 94.3 0.049 1.7E-06 42.7 4.6 41 150-192 35-75 (94)
86 2bud_A Males-absent on the fir 94.3 0.025 8.4E-07 44.4 2.8 40 152-192 27-68 (92)
87 2eqm_A PHD finger protein 20-l 94.2 0.1 3.6E-06 40.0 6.3 48 141-193 22-69 (88)
88 3s6w_A Tudor domain-containing 94.1 0.026 8.9E-07 38.8 2.3 37 146-186 9-45 (54)
89 3db3_A E3 ubiquitin-protein li 94.0 0.13 4.6E-06 43.9 7.0 90 145-237 17-123 (161)
90 3oa6_A MALE-specific lethal 3 94.0 0.13 4.4E-06 41.5 6.5 47 209-255 19-66 (110)
91 1mhn_A SurviVal motor neuron p 93.9 0.039 1.3E-06 38.8 2.9 41 146-192 11-51 (59)
92 2diq_A Tudor and KH domain-con 93.8 0.052 1.8E-06 42.0 3.9 57 147-209 41-100 (110)
93 3pnw_C Tudor domain-containing 93.3 0.058 2E-06 40.2 3.2 50 145-203 24-73 (77)
94 2lcc_A AT-rich interactive dom 93.2 0.035 1.2E-06 41.6 1.9 40 151-192 20-59 (76)
95 1wgs_A MYST histone acetyltran 93.1 0.031 1.1E-06 45.9 1.5 44 152-197 25-69 (133)
96 1g5v_A SurviVal motor neuron p 92.7 0.048 1.6E-06 42.0 2.1 38 145-186 17-54 (88)
97 4a4f_A SurviVal of motor neuro 92.3 0.06 2E-06 38.5 2.0 45 145-196 15-59 (64)
98 2d9t_A Tudor domain-containing 91.9 0.07 2.4E-06 39.7 2.1 37 146-186 17-53 (78)
99 3ntk_A Maternal protein tudor; 91.7 0.067 2.3E-06 44.2 2.0 56 147-209 56-113 (169)
100 2rsn_A Chromo domain-containin 91.1 0.072 2.4E-06 39.7 1.4 39 154-192 20-58 (75)
101 3p8d_A Medulloblastoma antigen 90.4 0.38 1.3E-05 35.6 4.7 41 209-260 6-46 (67)
102 4b9w_A TDRD1, tudor domain-con 90.3 0.23 7.9E-06 41.8 4.0 55 147-209 74-133 (201)
103 2ys9_A Homeobox and leucine zi 90.3 0.24 8.1E-06 37.2 3.5 41 18-70 17-57 (70)
104 2f5k_A MORF-related gene 15 is 90.2 0.088 3E-06 41.8 1.2 39 152-192 34-72 (102)
105 3qii_A PHD finger protein 20; 89.8 0.44 1.5E-05 36.9 4.8 43 207-260 19-61 (85)
106 4b9x_A TDRD1, tudor domain-con 89.7 0.25 8.5E-06 42.5 3.7 55 147-209 74-133 (226)
107 2lcc_A AT-rich interactive dom 89.5 0.83 2.8E-05 34.1 6.0 43 209-256 5-47 (76)
108 3sd4_A PHD finger protein 20; 88.6 0.4 1.4E-05 34.7 3.6 47 141-192 15-61 (69)
109 3m9q_A Protein MALE-specific l 88.6 1.1 3.8E-05 35.4 6.5 47 209-255 19-66 (101)
110 3m9p_A MALE-specific lethal 3 88.4 1.1 3.9E-05 36.0 6.5 46 209-255 19-66 (110)
111 2equ_A PHD finger protein 20-l 88.1 0.71 2.4E-05 34.4 4.8 45 205-260 5-49 (74)
112 1wjq_A KIAA1798 protein; MBT d 87.8 0.33 1.1E-05 38.7 3.0 47 141-192 16-62 (107)
113 2lrq_A Protein MRG15, NUA4 com 87.6 0.1 3.5E-06 39.9 0.0 39 152-192 24-62 (85)
114 2f5k_A MORF-related gene 15 is 87.2 0.98 3.4E-05 35.7 5.4 39 209-256 22-60 (102)
115 1mhn_A SurviVal motor neuron p 87.1 0.83 2.8E-05 31.8 4.4 43 209-260 3-46 (59)
116 2hqx_A P100 CO-activator tudor 86.9 0.43 1.5E-05 40.9 3.5 56 147-208 74-133 (246)
117 2ldm_A Uncharacterized protein 86.7 0.13 4.4E-06 39.4 0.0 43 208-261 5-47 (81)
118 3fwb_A Cell division control p 85.5 1.4 4.8E-05 32.9 5.3 60 1-68 1-66 (161)
119 2lv7_A Calcium-binding protein 85.1 1.7 5.7E-05 32.5 5.5 54 8-69 24-80 (100)
120 1wjr_A KIAA1617 protein; MBT d 84.9 0.51 1.7E-05 38.4 2.7 47 141-192 14-62 (127)
121 2rso_A Chromatin-associated pr 83.9 0.35 1.2E-05 37.2 1.3 37 156-192 31-69 (92)
122 1g5v_A SurviVal motor neuron p 82.8 1.4 4.8E-05 33.7 4.3 28 209-238 10-37 (88)
123 1wgs_A MYST histone acetyltran 82.2 2.4 8.2E-05 34.5 5.7 42 209-256 12-53 (133)
124 2wac_A CG7008-PA; unknown func 82.1 0.9 3.1E-05 37.7 3.2 53 147-208 60-117 (218)
125 1g6z_A CLR4 protein; transfera 81.3 0.71 2.4E-05 33.4 2.0 39 154-192 7-46 (70)
126 1jko_C HIN recombinase, DNA-in 81.3 0.78 2.7E-05 28.8 2.0 42 14-72 6-47 (52)
127 3pnw_C Tudor domain-containing 81.0 1.5 5.2E-05 32.4 3.8 36 201-238 5-44 (77)
128 3i5g_B Myosin regulatory light 80.8 3.3 0.00011 32.5 6.0 52 10-69 6-60 (153)
129 2dnt_A Chromodomain protein, Y 80.7 0.39 1.3E-05 35.6 0.4 39 154-192 12-50 (78)
130 2k3y_A Chromatin modification- 80.5 1.4 4.7E-05 36.6 3.7 26 209-238 9-34 (136)
131 3fdt_A Chromobox protein homol 79.4 0.65 2.2E-05 32.6 1.2 36 156-192 4-39 (59)
132 4a4f_A SurviVal of motor neuro 78.9 2.2 7.6E-05 30.2 4.0 28 209-238 8-35 (64)
133 3f2u_A Chromobox protein homol 78.7 0.6 2E-05 32.3 0.8 36 156-192 3-38 (55)
134 1pfb_A Polycomb protein; chrom 78.6 0.72 2.4E-05 31.8 1.2 36 156-192 4-39 (55)
135 3i91_A Chromobox protein homol 78.1 0.76 2.6E-05 31.6 1.2 36 156-192 4-39 (54)
136 3h91_A Chromobox protein homol 78.0 0.77 2.6E-05 31.6 1.2 36 156-192 4-39 (54)
137 1j7q_A CAVP, calcium vector pr 77.7 3.7 0.00013 28.2 4.8 50 11-68 5-60 (86)
138 2ro0_A Histone acetyltransfera 77.3 5.5 0.00019 30.7 6.0 41 208-257 22-62 (92)
139 2ba3_A NIKA; dimer, bacterial 77.0 3 0.0001 27.8 3.9 29 1-29 4-37 (51)
140 3bdl_A Staphylococcal nuclease 76.9 1.5 5E-05 42.6 3.3 57 147-209 420-480 (570)
141 1q3l_A Heterochromatin protein 76.3 0.89 3E-05 33.3 1.2 40 152-192 13-52 (69)
142 3j04_B Myosin regulatory light 76.0 4.7 0.00016 29.5 5.2 48 14-69 1-51 (143)
143 3lwe_A M-phase phosphoprotein 75.9 0.64 2.2E-05 33.0 0.4 36 156-192 5-40 (62)
144 1avs_A Troponin C; muscle cont 75.4 4.7 0.00016 28.0 4.9 49 12-68 12-63 (90)
145 1u78_A TC3 transposase, transp 74.2 8.1 0.00028 29.0 6.2 45 1-69 1-45 (141)
146 2pmy_A RAS and EF-hand domain- 74.2 2.9 9.9E-05 29.7 3.5 49 10-68 17-68 (91)
147 2mys_C Myosin; muscle protein, 74.0 6.2 0.00021 28.8 5.4 47 14-68 2-51 (149)
148 3g7l_A Chromo domain-containin 73.8 1.5 5.3E-05 30.9 1.9 40 152-192 4-44 (61)
149 2lhi_A Calmodulin, serine/thre 73.7 2.4 8.4E-05 33.9 3.4 50 11-68 2-54 (176)
150 2eko_A Histone acetyltransfera 73.7 4.4 0.00015 31.0 4.6 44 209-257 9-53 (87)
151 1tc3_C Protein (TC3 transposas 73.6 6.3 0.00021 23.9 4.6 40 13-69 5-44 (51)
152 1pdq_A Polycomb protein; methy 73.5 1.3 4.3E-05 32.8 1.4 39 153-192 18-56 (72)
153 2glo_A Brinker CG9653-PA; prot 73.2 4.4 0.00015 27.3 4.1 47 10-69 2-48 (59)
154 2joj_A Centrin protein; N-term 72.9 4.2 0.00014 27.1 3.9 47 14-68 1-50 (77)
155 2jnf_A Troponin C; stretch act 72.7 5.4 0.00019 29.7 4.9 51 10-68 3-57 (158)
156 3s6w_A Tudor domain-containing 71.6 4.5 0.00015 27.4 3.8 42 210-260 2-44 (54)
157 1ap0_A Modifier protein 1; chr 71.0 1.6 5.4E-05 31.9 1.5 37 155-192 13-49 (73)
158 1wdc_B Scallop myosin; calcium 70.9 9.1 0.00031 28.6 5.8 52 10-69 8-62 (156)
159 2rnz_A Histone acetyltransfera 70.9 6.6 0.00023 30.6 5.1 41 208-257 24-64 (94)
160 2lrq_A Protein MRG15, NUA4 com 73.0 0.91 3.1E-05 34.6 0.0 38 209-255 12-49 (85)
161 2elh_A CG11849-PA, LD40883P; s 69.6 27 0.00092 25.2 8.0 45 8-69 17-61 (87)
162 2kvm_A Chromobox protein homol 68.3 1.7 5.7E-05 31.8 1.1 40 152-192 10-49 (74)
163 2k1b_A Chromobox protein homol 68.2 1.3 4.4E-05 32.8 0.5 37 155-192 21-57 (73)
164 3ox6_A Calcium-binding protein 68.1 11 0.00039 27.4 5.7 38 12-49 3-43 (153)
165 2yum_A ZZZ3 protein, zinc fing 68.0 25 0.00087 24.9 7.4 61 10-79 7-67 (75)
166 2ktg_A Calmodulin, putative; e 67.9 6.7 0.00023 26.6 4.2 50 11-68 5-57 (85)
167 1dtl_A Cardiac troponin C; hel 67.6 10 0.00034 28.2 5.4 52 9-68 7-62 (161)
168 2dnv_A Chromobox protein homol 66.6 2.1 7.2E-05 30.4 1.3 38 154-192 9-46 (64)
169 2ovk_B RLC, myosin regulatory 66.5 6.1 0.00021 29.5 4.0 52 10-69 6-60 (153)
170 3i5g_C Myosin catalytic light 65.9 4.6 0.00016 31.9 3.3 47 13-67 2-53 (159)
171 3m9q_A Protein MALE-specific l 65.8 2.2 7.5E-05 33.7 1.4 23 170-192 57-79 (101)
172 1hlv_A CENP-B, major centromer 65.7 13 0.00046 28.0 5.9 49 10-73 4-52 (131)
173 2k9i_A Plasmid PRN1, complete 65.6 5.6 0.00019 26.1 3.3 44 2-46 1-47 (55)
174 2mys_B Myosin; muscle protein, 64.8 12 0.00042 28.1 5.5 50 12-69 17-70 (166)
175 2d9u_A Chromobox protein homol 64.3 2.9 9.9E-05 30.6 1.7 38 154-192 9-46 (74)
176 3qrx_A Centrin; calcium-bindin 63.9 10 0.00034 28.6 4.8 43 7-49 15-60 (169)
177 3h8z_A FragIle X mental retard 61.9 5.3 0.00018 32.6 3.1 47 144-197 66-116 (128)
178 2opo_A Polcalcin CHE A 3; calc 61.3 8.1 0.00028 26.4 3.5 48 12-68 3-53 (86)
179 3db3_A E3 ubiquitin-protein li 61.2 18 0.0006 30.9 6.2 53 203-257 4-67 (161)
180 3mts_A Histone-lysine N-methyl 61.2 3.2 0.00011 29.7 1.5 34 158-192 3-36 (64)
181 1fpw_A Yeast frequenin, calciu 59.8 22 0.00076 27.2 6.2 47 1-47 1-56 (190)
182 2bud_A Males-absent on the fir 59.5 17 0.00056 28.3 5.3 43 210-257 15-57 (92)
183 2lmt_A Calmodulin-related prot 59.5 5 0.00017 30.5 2.4 48 13-68 3-53 (148)
184 1exr_A Calmodulin; high resolu 59.5 14 0.00049 27.4 4.9 37 13-49 3-42 (148)
185 1c07_A Protein (epidermal grow 59.2 8.4 0.00029 27.9 3.5 37 13-49 3-42 (95)
186 2cqq_A RSGI RUH-037, DNAJ homo 58.2 29 0.00098 25.3 6.2 48 9-68 6-53 (72)
187 1s6c_A KV4 potassium channel-i 58.0 15 0.0005 28.2 4.9 37 12-48 13-50 (183)
188 3u0k_A Rcamp; fluorescent prot 57.9 12 0.00039 36.4 5.1 51 11-69 293-346 (440)
189 3m9p_A MALE-specific lethal 3 56.8 5.3 0.00018 32.1 2.1 41 151-192 35-79 (110)
190 2d9t_A Tudor domain-containing 56.3 10 0.00036 27.7 3.6 44 208-260 8-52 (78)
191 3ntk_A Maternal protein tudor; 55.6 15 0.0005 30.0 4.7 28 209-238 47-74 (169)
192 2eqk_A Tudor domain-containing 55.2 5.8 0.0002 30.5 2.1 39 143-186 26-64 (85)
193 1fi6_A EH domain protein REPS1 55.1 12 0.0004 26.8 3.6 38 13-50 2-42 (92)
194 2e5p_A Protein PHF1, PHD finge 54.8 16 0.00055 27.2 4.3 37 202-241 2-38 (68)
195 2biv_A SCML2 protein, sex COMB 54.4 6 0.0002 35.1 2.3 100 142-256 66-208 (243)
196 2k3y_A Chromatin modification- 54.3 5 0.00017 33.2 1.7 20 173-192 78-97 (136)
197 3fdr_A Tudor and KH domain-con 54.1 25 0.00086 25.8 5.4 28 208-237 26-53 (94)
198 1w7j_B Myosin light chain 1; m 54.0 3.6 0.00012 30.5 0.7 49 12-68 2-53 (151)
199 4ds7_A Calmodulin, CAM; protei 53.0 17 0.00058 26.3 4.3 38 12-49 3-43 (147)
200 2ee1_A Chromodomain helicase-D 52.8 4 0.00014 29.5 0.8 40 152-191 8-47 (64)
201 1wdc_C Scallop myosin; calcium 52.7 12 0.00041 27.8 3.5 38 12-49 1-43 (156)
202 2aao_A CDPK, calcium-dependent 52.5 17 0.00059 27.1 4.4 48 13-68 20-70 (166)
203 2ovk_C Myosin catalytic light 52.1 8.5 0.00029 28.8 2.6 48 13-68 2-54 (159)
204 4hcz_A PHD finger protein 1; p 51.9 33 0.0011 24.8 5.4 30 209-241 3-32 (58)
205 2equ_A PHD finger protein 20-l 51.5 7.3 0.00025 28.8 2.0 34 145-185 16-49 (74)
206 2bl0_C Myosin regulatory light 51.0 14 0.00046 27.0 3.5 35 15-49 1-38 (142)
207 2ldm_A Uncharacterized protein 55.8 3.3 0.00011 31.5 0.0 33 147-186 15-47 (81)
208 3dtp_E RLC, myosin regulatory 49.6 21 0.00072 28.3 4.7 51 11-69 48-101 (196)
209 2kn2_A Calmodulin; S MAPK phos 47.9 23 0.00078 24.3 4.1 47 14-68 3-52 (92)
210 1top_A Troponin C; contractIle 47.6 13 0.00044 27.5 2.9 38 12-49 12-52 (162)
211 2r58_A Polycomb protein SCM; M 47.1 11 0.00038 34.0 2.9 47 141-192 146-192 (265)
212 1qp6_A Protein (alpha2D); de n 46.9 7.8 0.00027 25.0 1.3 29 18-47 2-30 (35)
213 2f2o_A Calmodulin fused with c 45.6 22 0.00076 27.0 4.1 38 12-49 3-43 (179)
214 2r58_A Polycomb protein SCM; M 45.5 9.9 0.00034 34.3 2.3 100 142-256 38-180 (265)
215 1jba_A GCAP-2, protein (guanyl 44.2 19 0.00065 28.3 3.6 48 1-48 1-54 (204)
216 2biv_A SCML2 protein, sex COMB 43.2 14 0.00048 32.8 2.9 47 141-192 174-220 (243)
217 2llk_A Cyclin-D-binding MYB-li 42.1 53 0.0018 24.0 5.4 44 9-68 21-64 (73)
218 2rn7_A IS629 ORFA; helix, all 41.3 31 0.0011 25.3 4.2 48 12-69 5-53 (108)
219 2kgr_A Intersectin-1; structur 39.8 37 0.0013 25.3 4.4 39 11-49 5-46 (111)
220 1s1e_A KV channel interacting 39.3 42 0.0014 27.4 5.1 36 12-47 46-82 (224)
221 3fia_A Intersectin-1; EH 1 dom 39.0 35 0.0012 27.1 4.4 63 10-72 23-99 (121)
222 2ggz_A Guanylyl cyclase-activa 38.8 2.2 7.4E-05 34.5 -2.9 49 1-49 3-52 (211)
223 2eqj_A Metal-response element- 38.4 39 0.0013 24.9 4.2 32 205-239 9-40 (66)
224 2l8d_A Lamin-B receptor; DNA b 38.2 62 0.0021 23.9 5.2 42 209-259 9-50 (66)
225 2jpf_A Hypothetical protein; a 37.0 10 0.00035 30.3 0.9 18 51-69 43-60 (127)
226 3oa6_A MALE-specific lethal 3 36.8 15 0.0005 29.5 1.8 21 172-192 59-79 (110)
227 2jn6_A Protein CGL2762, transp 36.7 51 0.0017 23.7 4.7 44 11-69 3-46 (97)
228 2a6c_A Helix-turn-helix motif; 36.7 58 0.002 22.7 4.8 55 1-71 1-56 (83)
229 1irz_A ARR10-B; helix-turn-hel 36.5 52 0.0018 23.8 4.5 61 7-77 3-63 (64)
230 3e9g_A Chromatin modification- 36.4 25 0.00086 29.0 3.2 25 209-237 7-31 (130)
231 1iq3_A Ralbp1-interacting prot 36.1 11 0.00037 28.6 0.8 43 7-49 9-54 (110)
232 2lvv_A Flagellar calcium-bindi 36.0 38 0.0013 27.6 4.3 48 13-68 44-95 (226)
233 3pm8_A PFCDPK2, calcium-depend 35.8 45 0.0015 26.5 4.6 48 13-68 50-100 (197)
234 1yx7_A Calsensin, LAN3-6 antig 35.2 25 0.00085 23.5 2.6 44 16-65 3-49 (83)
235 2diq_A Tudor and KH domain-con 35.0 32 0.0011 26.0 3.4 28 209-238 32-59 (110)
236 3i9v_2 NADH-quinone oxidoreduc 34.9 23 0.00079 29.9 2.8 19 32-50 39-57 (181)
237 2ww6_A Fibritin, T4 fibritin; 34.8 13 0.00044 23.2 0.9 13 150-162 15-27 (27)
238 2ccm_A Calexcitin; EF hand, ca 34.6 58 0.002 24.9 4.9 35 12-46 4-42 (191)
239 1x3p_A Cpsrp43; chromo-2 domai 34.5 7.4 0.00025 27.0 -0.3 34 157-192 2-36 (54)
240 1qv0_A Obelin, OBL; photoprote 33.8 62 0.0021 24.7 5.0 40 11-50 10-58 (195)
241 2obh_A Centrin-2; DNA repair c 33.4 27 0.00094 25.9 2.8 35 15-49 1-38 (143)
242 1w8x_P Protein P16, protein S, 33.3 25 0.00086 27.7 2.6 22 62-83 18-39 (117)
243 1eh2_A EPS15; calcium binding, 33.2 55 0.0019 24.6 4.5 39 12-50 7-47 (106)
244 1g8i_A Frequenin, neuronal cal 31.2 53 0.0018 25.0 4.2 36 11-46 19-55 (190)
245 2r0q_C Putative transposon TN5 31.1 31 0.0011 28.5 3.0 45 15-73 158-202 (209)
246 1nya_A Calerythrin; EF-hand, m 30.0 61 0.0021 24.1 4.3 36 14-49 1-43 (176)
247 1b72_A Protein (homeobox prote 30.0 12 0.00041 28.0 0.2 19 58-76 5-23 (97)
248 2k0m_A Uncharacterized protein 29.9 33 0.0011 26.9 2.8 22 233-255 63-84 (104)
249 2epb_A Chromodomain-helicase-D 28.9 14 0.00048 26.6 0.4 41 152-192 8-53 (68)
250 3dlm_A Histone-lysine N-methyl 28.7 2.1E+02 0.0072 25.2 8.0 91 151-258 20-112 (213)
251 2x48_A CAG38821; archeal virus 28.5 60 0.0021 20.7 3.5 39 13-68 13-53 (55)
252 1u78_A TC3 transposase, transp 28.3 1.7E+02 0.0058 21.5 6.5 46 13-72 60-105 (141)
253 3cs1_A Flagellar calcium-bindi 27.8 93 0.0032 25.0 5.3 38 12-49 40-81 (219)
254 2ewt_A BLDD, putative DNA-bind 27.7 1.1E+02 0.0036 20.0 4.7 32 14-50 35-66 (71)
255 1bjf_A Neurocalcin delta; calc 27.6 45 0.0015 25.5 3.2 37 12-48 20-57 (193)
256 1avy_A Fibritin, gpwac M; bact 27.6 19 0.00064 27.1 0.9 14 150-163 59-72 (74)
257 3e9g_A Chromatin modification- 27.3 32 0.0011 28.3 2.4 21 172-192 75-95 (130)
258 2bec_A Calcineurin B homologou 27.2 33 0.0011 26.9 2.4 37 11-48 20-59 (202)
259 2iw5_B Protein corest, REST co 27.1 1.1E+02 0.0038 27.4 5.9 54 3-71 124-178 (235)
260 2ofy_A Putative XRE-family tra 26.8 29 0.00099 24.0 1.8 47 11-71 3-52 (86)
261 3fmy_A HTH-type transcriptiona 26.5 69 0.0024 21.9 3.7 40 13-71 10-49 (73)
262 2r1j_L Repressor protein C2; p 26.3 34 0.0012 22.1 2.0 23 39-71 21-43 (68)
263 3bs3_A Putative DNA-binding pr 26.2 83 0.0028 20.7 4.0 20 31-50 47-66 (76)
264 2sas_A Sarcoplasmic calcium-bi 26.2 55 0.0019 24.5 3.4 34 14-47 2-39 (185)
265 2hpk_A Photoprotein berovin; s 26.2 27 0.00091 27.6 1.6 38 10-47 26-66 (208)
266 2d8n_A Recoverin; structural g 26.1 76 0.0026 24.8 4.3 36 13-48 29-65 (207)
267 3o9x_A Uncharacterized HTH-typ 25.9 62 0.0021 24.4 3.7 51 21-71 58-109 (133)
268 2bl0_B Myosin regulatory light 25.8 48 0.0016 23.8 2.9 47 14-68 2-48 (145)
269 2xi8_A Putative transcription 25.4 36 0.0012 21.8 1.9 23 39-71 17-39 (66)
270 1oz2_A Lethal(3)malignant brai 25.4 40 0.0014 31.0 2.9 47 141-192 151-197 (331)
271 2wac_A CG7008-PA; unknown func 25.3 76 0.0026 25.9 4.3 60 172-238 16-78 (218)
272 3h6z_A Polycomb protein SFMBT; 25.1 36 0.0012 32.7 2.6 47 141-192 379-425 (447)
273 2qqr_A JMJC domain-containing 24.9 1.1E+02 0.0037 24.6 5.0 28 209-239 5-32 (118)
274 2dig_A Lamin-B receptor; tudor 24.7 1.1E+02 0.0037 22.7 4.5 42 209-259 12-53 (68)
275 2jul_A Calsenilin; EF-hand, ca 24.5 92 0.0032 25.7 4.8 36 12-47 86-122 (256)
276 3k21_A PFCDPK3, calcium-depend 24.4 82 0.0028 24.7 4.3 37 13-49 45-84 (191)
277 1juo_A Sorcin; calcium-binding 24.4 19 0.00065 28.4 0.5 34 14-48 27-63 (198)
278 2cqr_A RSGI RUH-043, DNAJ homo 24.2 1.4E+02 0.0048 21.6 5.1 47 11-69 18-65 (73)
279 1y7y_A C.AHDI; helix-turn-heli 24.2 85 0.0029 20.5 3.7 20 31-50 50-69 (74)
280 1zug_A Phage 434 CRO protein; 23.7 40 0.0014 22.0 1.9 23 39-71 19-41 (71)
281 3j20_O 30S ribosomal protein S 23.6 48 0.0016 27.6 2.8 16 13-28 53-68 (148)
282 2dg7_A Putative transcriptiona 23.6 22 0.00075 27.3 0.7 50 1-70 1-51 (195)
283 1s6j_A CDPK, calcium-dependent 23.5 11 0.00038 25.6 -1.0 48 13-68 16-66 (87)
284 3ut1_A Lethal(3)malignant brai 23.5 53 0.0018 30.2 3.3 47 141-192 250-296 (324)
285 2m0o_A PHD finger protein 1; t 23.1 97 0.0033 23.6 4.1 31 208-241 25-55 (79)
286 2kz2_A Calmodulin, CAM; TR2C, 22.8 1.4E+02 0.0046 21.0 4.8 43 18-68 27-72 (94)
287 1wy9_A Allograft inflammatory 22.7 80 0.0027 24.1 3.8 44 16-67 44-90 (147)
288 3bru_A Regulatory protein, TET 22.7 50 0.0017 25.6 2.6 47 12-71 28-75 (222)
289 1oz2_A Lethal(3)malignant brai 22.4 55 0.0019 30.1 3.2 47 141-192 255-301 (331)
290 3lqv_P Splicing factor 3B subu 22.1 1.2E+02 0.004 20.3 3.9 29 13-42 1-31 (39)
291 1adr_A P22 C2 repressor; trans 22.1 45 0.0015 22.0 2.0 23 39-71 21-43 (76)
292 3f70_A Lethal(3)malignant brai 22.1 53 0.0018 31.7 3.1 47 141-192 369-415 (456)
293 3feo_A MBT domain-containing p 22.0 64 0.0022 30.9 3.6 43 143-191 47-95 (437)
294 1lmb_3 Protein (lambda repress 21.7 1.1E+02 0.0037 21.2 4.0 20 31-50 54-73 (92)
295 1dgu_A Calcium-saturated CIB; 21.7 71 0.0024 24.4 3.3 38 10-48 10-58 (183)
296 3bd1_A CRO protein; transcript 21.6 43 0.0015 23.0 1.8 23 39-71 14-36 (79)
297 2b5a_A C.BCLI; helix-turn-heli 21.6 90 0.0031 20.6 3.4 20 31-50 47-66 (77)
298 2k27_A Paired box protein PAX- 21.4 2.8E+02 0.0096 21.3 7.2 54 11-70 81-135 (159)
299 3mse_B Calcium-dependent prote 21.2 84 0.0029 24.2 3.6 36 15-50 34-72 (180)
300 2d58_A Allograft inflammatory 20.9 1.1E+02 0.0039 21.6 4.1 45 16-68 28-75 (107)
301 2xzm_M RPS18E; ribosome, trans 20.9 64 0.0022 27.0 3.0 16 13-28 60-75 (155)
302 2lnk_A Protein S100-A4; EF-han 20.8 1.5E+02 0.0052 22.5 5.0 54 12-69 14-73 (113)
303 3t76_A VANU, transcriptional r 20.8 1.1E+02 0.0037 22.3 4.0 20 31-50 60-79 (88)
304 1s6i_A CDPK, calcium-dependent 20.7 21 0.00071 28.3 -0.0 36 13-48 3-41 (188)
305 1k2h_A S100A1, S-100 protein, 20.6 1.6E+02 0.0056 19.8 4.7 45 16-68 5-59 (93)
306 3dd4_A KV channel-interacting 20.4 85 0.0029 25.6 3.7 34 12-45 59-93 (229)
307 1r69_A Repressor protein CI; g 20.4 51 0.0017 21.3 1.9 23 39-71 17-39 (69)
308 3kz3_A Repressor protein CI; f 20.4 1.5E+02 0.0051 20.1 4.5 24 39-72 28-51 (80)
309 1p4w_A RCSB; solution structur 20.2 1.3E+02 0.0046 22.4 4.5 47 10-74 31-77 (99)
No 1
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=1.7e-19 Score=139.23 Aligned_cols=75 Identities=24% Similarity=0.364 Sum_probs=69.9
Q ss_pred CCCCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhC-----CCccccCCcccccchhhhhhhcchhhHhhhc
Q 024859 4 PPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFS-----ESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 78 (261)
Q Consensus 4 Pp~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~-----lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~ 78 (261)
.+..++.|+.||+.||..||+.|+. ++||+...|++||+.+| .+.+++|+..|+++||++||||||+|+|++.
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~--~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNE--NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 4466899999999999999999999 69999999999999999 7888899999999999999999999999988
Q ss_pred cC
Q 024859 79 IK 80 (261)
Q Consensus 79 ~~ 80 (261)
..
T Consensus 82 ~~ 83 (95)
T 2cuf_A 82 NI 83 (95)
T ss_dssp HC
T ss_pred hc
Confidence 64
No 2
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=8.7e-19 Score=127.58 Aligned_cols=66 Identities=20% Similarity=0.332 Sum_probs=59.9
Q ss_pred CCCCCCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 2 GRPPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 2 grPp~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
|.+...+++|+.||..|+..||+.|.. ++||+...++.||..+||+ +.||++||||||+|+|+...
T Consensus 2 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~----------~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 2 SSGSSGRSSRTRFTDYQLRVLQDFFDA--NAYPKDDEFEQLSNLLNLP----------TRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp CCSCCSCCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHSCCC----------HHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHc--CCCcCHHHHHHHHHHhCCC----------HHHhHHhhHhhhHHHhhccc
Confidence 345677999999999999999999998 6999999999999999976 59999999999999998764
No 3
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=9.2e-19 Score=131.07 Aligned_cols=62 Identities=23% Similarity=0.275 Sum_probs=57.3
Q ss_pred CCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 6 ~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
..+++|+.||..|+..||+.|.. ++||+...+.+||..++|+ +.||++||||||+|+|+...
T Consensus 16 ~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~L~----------~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 16 KGRRSRTVFTELQLMGLEKRFEK--QKYLSTPDRIDLAESLGLS----------QLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCSCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHhCCC----------HHHeeeccHHHHHHhhcccC
Confidence 45889999999999999999999 6999999999999999976 59999999999999998764
No 4
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=8.7e-19 Score=128.03 Aligned_cols=64 Identities=20% Similarity=0.274 Sum_probs=58.2
Q ss_pred CCCCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 4 PPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 4 Pp~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
....+++|+.||..|+..||+.|.. ++||+...+.+||..+||+ +.||++||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~----------~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAA--NKFITKDKRRKISAATSLS----------ERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHTCCC----------HHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHCCC----------HHHhhHhhHhHHHHhcccCC
Confidence 3456899999999999999999998 6999999999999999976 59999999999999987763
No 5
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.76 E-value=1.3e-18 Score=128.53 Aligned_cols=68 Identities=21% Similarity=0.241 Sum_probs=62.2
Q ss_pred CCCCCCCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhccC
Q 024859 1 MGRPPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSIK 80 (261)
Q Consensus 1 mgrPp~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~~ 80 (261)
|......+++|+.||..|+..||+.|.. ++||+...+.+||..+||+ +.||++||||||+|+|+...+
T Consensus 1 ~s~~~~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~----------~~qV~vWFqNRR~k~kk~~~~ 68 (73)
T 2l7z_A 1 MSHMLEGRKKRVPYTKVQLKELEREYAT--NKFITKDKRRRISATTNLS----------ERQVTIWFQNRRVKEKKVINK 68 (73)
T ss_dssp CCSSSCCCCCCCCSCHHHHHHHHHHHHH--TSCCCHHHHHHHHHHHTSC----------SHHHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhh--CCCcCHHHHHHHHHHHCCC----------HHHHHHHHHHHhHHHHHHhcc
Confidence 5667788999999999999999999998 6999999999999999976 599999999999999987754
No 6
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.76 E-value=1.1e-18 Score=129.83 Aligned_cols=66 Identities=26% Similarity=0.298 Sum_probs=60.8
Q ss_pred CCCCCCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 2 GRPPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 2 grPp~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
|.|+..+++|+.||..|+..||+.|.. ++||+...+..||..+||+ +.||++||||||+|+|+...
T Consensus 4 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~----------~~qV~~WFqNRR~k~kr~~~ 69 (77)
T 1nk2_P 4 GLPNKKRKRRVLFTKAQTYELERRFRQ--QRYLSAPEREHLASLIRLT----------PTQVKIWFQNHRYKTKRAQN 69 (77)
T ss_dssp CCSCCCCCCCCCCCHHHHHHHHHHHHH--CSCCCHHHHHHHHHHTTCC----------HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHhh--cCCCCHHHHHHHHHHhCCC----------HHHHHHHhHHhhcchhhhhc
Confidence 567788999999999999999999998 6999999999999999976 59999999999999987764
No 7
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=126.70 Aligned_cols=63 Identities=25% Similarity=0.325 Sum_probs=57.9
Q ss_pred CCCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 5 PSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 5 p~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
...+++|+.||..|+..||+.|.. ++||+...++.||..+||+ +.||++||||||+|+|+...
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~----------~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQE--TKYPDVGTREQLARKVHLR----------EEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCC----------HHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHCCC----------HHHeehccccccccccccCC
Confidence 346889999999999999999999 6999999999999999976 59999999999999998764
No 8
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=9.6e-19 Score=127.82 Aligned_cols=65 Identities=20% Similarity=0.266 Sum_probs=58.8
Q ss_pred CCCCCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 3 RPPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 3 rPp~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
..+..+++|+.||..|+..||+.|.. ++||+...+++||..++|+ +.||++||||||+++|+...
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~----------~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 3 SGSSGRKPRTIYSSFQLAALQRRFQK--TQYLALPERAELAASLGLT----------QTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp SCCCCCCSSCSSCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHSSCC----------HHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHcC--CCCCCHHHHHHHHHHhCCC----------HHHHHHHHHHHhhhhcccCC
Confidence 34567899999999999999999988 6999999999999999976 59999999999999987763
No 9
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=8.6e-19 Score=130.10 Aligned_cols=64 Identities=20% Similarity=0.289 Sum_probs=58.5
Q ss_pred CCCCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 4 PPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 4 Pp~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
|...+++|+.||..|+..||+.|.. ++||+...+++||..++|+ +.||++||||||+|+|++..
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~--~~yp~~~~r~~La~~l~l~----------~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLL--DSNPTRKMLDHIAHEVGLK----------KRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHH--CSSCCHHHHHHHHHHHTSC----------HHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHCcC----------HHHhHHHhHHHHHhHhhhcc
Confidence 4456899999999999999999998 6999999999999999976 59999999999999998764
No 10
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.75 E-value=1.1e-18 Score=124.21 Aligned_cols=59 Identities=19% Similarity=0.345 Sum_probs=51.9
Q ss_pred CCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhh
Q 024859 7 NGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 77 (261)
Q Consensus 7 ~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k 77 (261)
.+++|+.||..|+..||+.|.. ++||+...+.+||..+||+ +.||++||||||+|+|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~----------~~qV~~WFqNrR~k~kk~ 61 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNE--NRYLTERRRQQLSSELGLN----------EAQIKIWFKNKRAKIKKS 61 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCC----------HHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHCcC----------HHHHHHHhhhhccccccC
Confidence 5789999999999999999998 6999999999999999976 599999999999999863
No 11
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.75 E-value=1.4e-18 Score=124.66 Aligned_cols=61 Identities=28% Similarity=0.330 Sum_probs=54.5
Q ss_pred CCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhc
Q 024859 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 78 (261)
Q Consensus 6 ~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~ 78 (261)
+.+++|+.||..|+..||+.|.. ++||+...+..||..+||+ +.||++||||||+|+|+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~----------~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLF--NKYISRPRRVELAVMLNLT----------ERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCC----------HHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhc--CCCcCHHHHHHHHHHhCcC----------HHHhhHHHHhhhhhhhhhc
Confidence 35789999999999999999998 6999999999999999976 5999999999999999763
No 12
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=2.5e-18 Score=125.61 Aligned_cols=63 Identities=30% Similarity=0.358 Sum_probs=58.0
Q ss_pred CCCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 5 PSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 5 p~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
+..+++|+.||..|+..||+.|.. ++||+...+++||..++|+ +.||++||||||+|+|+...
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~----------~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFET--QKYLSPPERKRLAKMLQLS----------ERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHTTCC----------HHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHc--CCCcCHHHHHHHHHHHCCC----------HHHhhHhhHhhHhhcCCCCC
Confidence 456789999999999999999998 6999999999999999976 59999999999999998764
No 13
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=1.9e-18 Score=121.44 Aligned_cols=57 Identities=25% Similarity=0.327 Sum_probs=53.5
Q ss_pred CCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhh
Q 024859 8 GGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRA 76 (261)
Q Consensus 8 ~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~ 76 (261)
+++|+.||..|+..||+.|.. ++||+...+.+||..+||+ +.||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~----------~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ--KQYLSIAERAEFSSSLSLT----------ETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH--CSCCCHHHHHHHHHHTTCC----------HHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc--CCCcCHHHHHHHHHHHCcC----------HHHhhhhhhHhhhhhcc
Confidence 578999999999999999998 6999999999999999976 59999999999999986
No 14
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-18 Score=125.99 Aligned_cols=64 Identities=22% Similarity=0.334 Sum_probs=58.3
Q ss_pred CCCCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 4 PPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 4 Pp~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
+...+++|+.||..|+..||+.|.. ++||+...+.+||..+||+ +.||++||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~----------~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDI--NNSPSEEQIKEMADKSGLP----------QKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHH--CSSCCTTHHHHHHHHHCCC----------HHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH--CCCCCHHHHHHHHHHhCCC----------HHHHHHHhhhhhHHHhhhcc
Confidence 3456899999999999999999998 6999999999999999976 59999999999999998763
No 15
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=4.9e-18 Score=126.92 Aligned_cols=65 Identities=22% Similarity=0.306 Sum_probs=59.1
Q ss_pred CCCCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhccC
Q 024859 4 PPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSIK 80 (261)
Q Consensus 4 Pp~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~~ 80 (261)
+...+++|+.||..|+..||+.|.. ++||+...++.||..++|+ +.||++||||||+|+|+....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~----------~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAK--TRYPDIFMREEVALKINLP----------ESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHTTCC----------HHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHCcC----------HHHhhhhhHHHhHHhhHHHHc
Confidence 3456899999999999999999999 6999999999999999976 599999999999999988753
No 16
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.74 E-value=2.1e-18 Score=133.16 Aligned_cols=67 Identities=28% Similarity=0.414 Sum_probs=60.7
Q ss_pred CCCCCCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhccC
Q 024859 2 GRPPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSIK 80 (261)
Q Consensus 2 grPp~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~~ 80 (261)
+.|+..+++|+.||..|+..||+.|.. ++||+...+.+||..+||+ +.||++||||||+|+|+....
T Consensus 12 ~~~~~~rr~Rt~ft~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~l~L~----------~~qV~vWFqNRR~k~kr~~~~ 78 (93)
T 3a01_A 12 RTPPKRKKPRTSFTRIQVAELEKRFHK--QKYLASAERAALARGLKMT----------DAQVKTWFQNRRTKWRRQTAE 78 (93)
T ss_dssp SCCCCCCCCCCCCCHHHHHHHHHHHHH--CSCCCHHHHHHHHHTTTCC----------HHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCcCCCHHHHHHHHHHHHc--CCCcCHHHHHHHHHHhCCC----------hhhcccccHhhhhhhhhhhHH
Confidence 345667899999999999999999998 6999999999999999976 599999999999999998753
No 17
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.74 E-value=2.5e-18 Score=129.07 Aligned_cols=63 Identities=22% Similarity=0.308 Sum_probs=57.6
Q ss_pred CCCCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhc
Q 024859 4 PPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 78 (261)
Q Consensus 4 Pp~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~ 78 (261)
|...+++|+.||..|+..||+.|.. ++||+...+..||..+||+ +.||++||||||+|+|+..
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~----------~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQR--QKYLSLQQMQELSNILNLS----------YKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHH--SSSCCHHHHHHHHHHTTCC----------HHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHcCCC----------HHHHHHHHHHHHHHHHHHh
Confidence 4456899999999999999999998 6999999999999999976 5999999999999998765
No 18
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.74 E-value=1.9e-18 Score=123.34 Aligned_cols=59 Identities=24% Similarity=0.304 Sum_probs=51.2
Q ss_pred CCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhh
Q 024859 7 NGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 77 (261)
Q Consensus 7 ~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k 77 (261)
.+++|+.||..|+..||+.|.. ++||+...+.+||..+||+ +.||++||||||+|+|++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~----------~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQK--QKYLSLQQMQELSSILNLS----------YKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHH--CSCCCHHHHHHHHHHHTCC----------HHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCC----------HHHhhHHhHHhhcchhhc
Confidence 4688999999999999999998 6999999999999999976 599999999999999875
No 19
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=3.5e-18 Score=127.94 Aligned_cols=64 Identities=20% Similarity=0.262 Sum_probs=58.5
Q ss_pred CCCCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 4 PPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 4 Pp~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
.+..+++|+.||..|+..||+.|.. ++||+...+..||..++|+ +.||++||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~----------~~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFER--THYPDVFARERLAAKIDLP----------EARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHTTCC----------HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHhCCC----------HHHhhHHHHHHHHHHHHHhh
Confidence 3456899999999999999999988 6999999999999999976 59999999999999998764
No 20
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.73 E-value=2.4e-18 Score=122.08 Aligned_cols=58 Identities=26% Similarity=0.392 Sum_probs=48.9
Q ss_pred CCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhc
Q 024859 9 GPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 78 (261)
Q Consensus 9 ~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~ 78 (261)
++|+.||..|+..||+.|.. ++||+...+.+||..+||+ +.||++||||||+|+|+..
T Consensus 1 g~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~----------~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 1 GSHMTFTSFQLEELEKAFSR--THYPDVFTREELAMKIGLT----------EARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ----CCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTSC----------HHHHHHHHHHHHHHHC---
T ss_pred CCCcccCHHHHHHHHHHHHc--CCCcCHHHHHHHHHHHCcC----------HHHHHHHhhhhhhhhHhhc
Confidence 47899999999999999998 6999999999999999976 5999999999999998764
No 21
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=5.2e-18 Score=126.31 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=58.1
Q ss_pred CCCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 5 PSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 5 p~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
...+++|+.||..|+..||+.|.. ++||+...++.||..++|+ +.||++||||||+|+|++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~----------~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAI--NHNPDAKDLKQLAQKTGLT----------KRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHTCCC----------HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHhCCC----------HHHhhHccHHHHHHHHHHHH
Confidence 456889999999999999999998 6999999999999999976 59999999999999998874
No 22
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.73 E-value=7e-18 Score=123.97 Aligned_cols=64 Identities=17% Similarity=0.323 Sum_probs=58.3
Q ss_pred CCCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhccC
Q 024859 5 PSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSIK 80 (261)
Q Consensus 5 p~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~~ 80 (261)
|...+.|+.||..|+..||+.|.. ++||+...+++||..+||+ +.||++||||||+|+|+....
T Consensus 4 ~~~~~~Rt~ft~~Ql~~Le~~F~~--~~yp~~~~r~~La~~l~l~----------~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 4 PDSFGIRAKKTKEQLAELKVSYLK--NQFPHDSEIIRLMKITGLT----------KGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCCCCTTCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHhCcC----------HHHeeeCChhHhHHHHhhCcC
Confidence 456789999999999999999998 6999999999999999976 499999999999999987643
No 23
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.73 E-value=4.4e-18 Score=120.75 Aligned_cols=58 Identities=21% Similarity=0.262 Sum_probs=53.7
Q ss_pred CCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhh
Q 024859 8 GGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 77 (261)
Q Consensus 8 ~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k 77 (261)
+++|+.||..|+..||+.|.. ++||+...+.+||..+||+ +.||++||||||+++|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~----------~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK--ENYVSRPRRCELAAQLNLP----------ESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH--CSCCCHHHHHHHHHHHTSC----------HHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHCcC----------HHHHHHhhHHHHhHhhcc
Confidence 578999999999999999998 6999999999999999976 599999999999999874
No 24
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.9e-18 Score=128.17 Aligned_cols=63 Identities=19% Similarity=0.290 Sum_probs=57.8
Q ss_pred CCCCCccccCHHHHHHHHHHHHhccC----CCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhccC
Q 024859 6 SNGGPAFRFNPAEVTEMEGILQEHHN----AMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSIK 80 (261)
Q Consensus 6 ~~~~pRt~FT~~Ql~eLEk~F~~~~n----~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~~ 80 (261)
..++.|+.||..|+..||+.|+. + +||+...+++||..+||+ +.||++||||||+|+|+....
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~--~~~~~~yp~~~~r~~La~~lgL~----------~~qV~vWFqNrR~k~rk~~~~ 73 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDN--GMTSLGSVCREKIEAVATELNVD----------CEIVRTWIGNRRRKYRLMGIE 73 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTT--TTTCCSHHHHHHHHHHHHHHTCC----------HHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh--CCCCCCCcCHHHHHHHHHHhCCC----------HHHhhHhHHHHHHHHhhccCC
Confidence 45889999999999999999988 6 999999999999999976 599999999999999987654
No 25
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.72 E-value=4.8e-18 Score=123.87 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=56.6
Q ss_pred CCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 7 NGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 7 ~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
.+++|+.||..|+..||+.|.. ++||+...+.+||..+||+ +.||++||||||+++|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~----------~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHF--NRYLTRRRRIEIAHALSLT----------ERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHH--CSSCCTTHHHHHHHHHTCC----------HHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHcc--CCCCCHHHHHHHHHHHCcC----------HhhhhHHhHHHHhHHhHhcc
Confidence 4688999999999999999998 6999999999999999976 59999999999999998874
No 26
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.72 E-value=4.5e-18 Score=122.76 Aligned_cols=61 Identities=21% Similarity=0.273 Sum_probs=56.4
Q ss_pred CCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 7 NGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 7 ~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
.+++|+.||..|+..||+.|.. ++||+...++.||..+||+ +.||++||||||+++|++..
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~----------~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAA--NPRPDALMKEQLVEMTGLS----------PRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHH--CSCCCHHHHHHHHHHHTSC----------HHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhc--CCCcCHHHHHHHHHHHCcC----------HHHHHHHhHHHHHHHhHHhh
Confidence 4789999999999999999998 6999999999999999976 59999999999999988763
No 27
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=8.5e-18 Score=124.83 Aligned_cols=65 Identities=22% Similarity=0.335 Sum_probs=58.5
Q ss_pred CCCCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhccC
Q 024859 4 PPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSIK 80 (261)
Q Consensus 4 Pp~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~~ 80 (261)
|...+..|.+||..||..||+.|.. ++||+...+..||..+||+ +.||++||||||+++|++..+
T Consensus 4 p~~~~~kr~~~t~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~l~l~----------~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 4 GSSGPTKYKERAPEQLRALESSFAQ--NPLPLDEELDRLRSETKMT----------RREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCSSCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHCCC----------HHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHhCCC----------HHHhhHhhHHHHHHHHHhhhc
Confidence 4445778899999999999999999 6999999999999999976 599999999999999988753
No 28
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=7.6e-18 Score=124.12 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=56.4
Q ss_pred CCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 7 NGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 7 ~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
+++.|+.||..|+..||+.|... ++||+...+..||..+||+ +.||++||||||+++|+...
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~-~~yp~~~~r~~LA~~~~l~----------~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKV-NKHPDPTTLCLIAAEAGLT----------EEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHT-TSSCCHHHHHHHHHHHTSC----------HHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHCcC----------HHHHHHHHHHHHHHHHHhcc
Confidence 46789999999999999999832 5999999999999999976 59999999999999998874
No 29
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.72 E-value=6.5e-18 Score=117.79 Aligned_cols=57 Identities=32% Similarity=0.402 Sum_probs=53.0
Q ss_pred CCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHh
Q 024859 7 NGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIR 75 (261)
Q Consensus 7 ~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K 75 (261)
.+++|+.||..|+..||+.|.. ++||+...+.+||..+||+ +.||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~----------~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQ--QRYLSAPERDQLASVLKLT----------STQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHTCC----------HHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHhCcC----------HHHHHHhhHHhhccCC
Confidence 4688999999999999999997 6999999999999999976 4999999999999975
No 30
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.72 E-value=6.4e-18 Score=118.82 Aligned_cols=55 Identities=29% Similarity=0.374 Sum_probs=49.8
Q ss_pred cccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhc
Q 024859 12 FRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 78 (261)
Q Consensus 12 t~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~ 78 (261)
|.||+.|+..||+.|.. ++||+...+.+||..+|++ +.||++||||||+|+|+.+
T Consensus 2 T~ft~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~l~l~----------~~qV~~WFqNRR~k~kr~~ 56 (56)
T 3a03_A 2 TSFSRSQVLELERRFLR--QKYLASAERAALAKALRMT----------DAQVKTWFQNRRTKWRRQT 56 (56)
T ss_dssp --CCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCC----------HHHHHHHHHHHHHHHHHHC
T ss_pred CccCHHHHHHHHHHHHh--cCCcCHHHHHHHHHHhCcC----------HHHhhHhhHHhhhhhcccC
Confidence 68999999999999998 6999999999999999976 5999999999999999863
No 31
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.72 E-value=8.2e-18 Score=122.45 Aligned_cols=61 Identities=26% Similarity=0.322 Sum_probs=56.5
Q ss_pred CCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 7 NGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 7 ~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
.+++|+.||..|+..||+.|.. ++||+...+..||..+||+ +.||++||||||+++|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~----------~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQ--QKYLSAPEREHLASMIHLT----------PTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHH--SSSCCHHHHHHHHHHHTSC----------HHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCC----------HHHhHHHhHHHhhhhhhhhh
Confidence 4679999999999999999998 6999999999999999976 59999999999999998774
No 32
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=9.7e-18 Score=127.48 Aligned_cols=62 Identities=18% Similarity=0.335 Sum_probs=56.7
Q ss_pred CCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 6 ~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
+++..+..||.+|+.+||+.|.. ++||+..+|++||..+||+ ++||++||||||+|+|+..-
T Consensus 2 ~~g~~r~kfT~~Ql~~Le~~F~~--~~YPs~~er~~LA~~tgLt----------e~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 2 SSGSSGKRKTKEQLAILKSFFLQ--CQWARREDYQKLEQITGLP----------RPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCSCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHTCCC----------HHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHCcC----------HHHhhHHhHhhHHHHHHHHH
Confidence 35677889999999999999999 6999999999999999976 59999999999999998764
No 33
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.71 E-value=7.2e-18 Score=126.88 Aligned_cols=61 Identities=21% Similarity=0.320 Sum_probs=52.8
Q ss_pred CCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhc
Q 024859 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 78 (261)
Q Consensus 6 ~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~ 78 (261)
..+++|+.||..|+..||+.|.. ++||+...+.+||..+||+ +.||++||||||+|+|+..
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~l~l~----------~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHT--NHYLTRRRRIEMAHALSLT----------ERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCC----------HHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhCCC----------HHHHHHHhHHhhhhhhhhc
Confidence 45789999999999999999998 6999999999999999976 5999999999999999764
No 34
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.71 E-value=1.1e-17 Score=124.49 Aligned_cols=61 Identities=23% Similarity=0.294 Sum_probs=56.3
Q ss_pred CCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhc
Q 024859 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 78 (261)
Q Consensus 6 ~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~ 78 (261)
..+++|+.||..|+..||+.|.. ++||+...++.||..+||+ +.||++||||||+++|+..
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~----------~~qV~vWFqNRR~k~kk~~ 72 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEFLF--NMYLTRDRRYEVARLLNLT----------ERQVKIWFQNRRMKMKKIN 72 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCC----------HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHCcC----------HHHHHHHHHHHHHHHHHhh
Confidence 35789999999999999999998 6999999999999999976 5999999999999998765
No 35
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.71 E-value=6.8e-18 Score=127.65 Aligned_cols=61 Identities=8% Similarity=0.130 Sum_probs=55.0
Q ss_pred CCCCCccccCHHHHHHHHHHHHhcc--CCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhh
Q 024859 6 SNGGPAFRFNPAEVTEMEGILQEHH--NAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRA 76 (261)
Q Consensus 6 ~~~~pRt~FT~~Ql~eLEk~F~~~~--n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~ 76 (261)
..+++||.||.+|+.+||+.|+..+ ++||+...|++||..++|+ ++||++||||||+|+|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~----------~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVP----------RQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCC----------HHHHHHHHHHHSSSSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCC----------cccccCCccccCcCCCC
Confidence 3588999999999999999999832 4999999999999999976 59999999999999875
No 36
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.71 E-value=1e-17 Score=121.21 Aligned_cols=61 Identities=26% Similarity=0.509 Sum_probs=56.4
Q ss_pred CCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 7 NGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 7 ~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
.+++|+.||+.|+..||+.|.. ++||+...+..||..+|++ +.||++||||||+++|+...
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~----------~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRV--NCYPGIDILEDLAQKLNLE----------LDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHTCC----------HHHHHHHHHHHHHHHHCSCC
T ss_pred CcCCCCCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHCcC----------HHHhhHhhHhHHHHHhHhch
Confidence 3689999999999999999988 6999999999999999976 59999999999999998764
No 37
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.71 E-value=6.6e-18 Score=128.44 Aligned_cols=61 Identities=21% Similarity=0.307 Sum_probs=53.7
Q ss_pred CCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhc
Q 024859 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 78 (261)
Q Consensus 6 ~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~ 78 (261)
..+++|+.||..|+..||+.|.. ++||+...|..||..+||+ +.||++||||||+|+|+..
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~--~~yp~~~~r~~La~~l~l~----------~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHF--NRYLTRRRRIEIAHALSLT----------ERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHTTCC----------HHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHhCcC----------HHHhhHHhHHHHHHhHhhc
Confidence 45889999999999999999988 6999999999999999976 5999999999999999764
No 38
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.71 E-value=8.6e-18 Score=122.32 Aligned_cols=60 Identities=23% Similarity=0.326 Sum_probs=56.1
Q ss_pred CCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 8 GGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 8 ~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
+++|+.||..|+..||+.|.. ++||+...+..||..+||+ +.||++||||||+++|+...
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~----------~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 3 RRTRTTFTSSQIAELEQHFLQ--GRYLTAPRLADLSAKLALG----------TAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp SCCSCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHTSC----------HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHhc--CCCcCHHHHHHHHHHhCcC----------HHHhhHhhHHHHHHHHHHhc
Confidence 679999999999999999998 6999999999999999976 59999999999999998875
No 39
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.71 E-value=1.2e-17 Score=124.96 Aligned_cols=62 Identities=21% Similarity=0.363 Sum_probs=57.1
Q ss_pred CCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 6 ~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
..+++|+.||..|+..||+.|.. ++||+...+..||..+||+ +.||++||||||+++|++..
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~----------~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFER--TQYPDIYTREELAQRTNLT----------EARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCC----------HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHCcC----------HHHHHHHHHHHhhhhhhhcc
Confidence 35889999999999999999998 6999999999999999976 59999999999999998763
No 40
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=120.80 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=57.6
Q ss_pred CCCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 5 PSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 5 p~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
...+++|+.||..|+..||+.|.. ++||+...+.+||..+||+ +.||++||||||+|+|++..
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~----------~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQK--THYPDVYAREQLAMRTDLT----------EARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCC----------HHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHhCCC----------HHHHHHHhHHHHHHHHHHHh
Confidence 345788999999999999999998 6999999999999999976 49999999999999998764
No 41
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.70 E-value=4.3e-18 Score=123.73 Aligned_cols=61 Identities=21% Similarity=0.315 Sum_probs=56.8
Q ss_pred CCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 7 NGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 7 ~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
.+++|+.||+.|+..||+.|.. ++||+...+..||..+||+ +.||++||||||+|+|+...
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~----------~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQR--NRYPDMSTREEIAVWTNLT----------EARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTT--CSSCCTTTTTHHHHHTTSC----------HHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHCcC----------HHHHHHHHHHHhHHHHHHhh
Confidence 5789999999999999999988 6999999999999999976 59999999999999998774
No 42
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.70 E-value=9e-18 Score=127.46 Aligned_cols=60 Identities=8% Similarity=0.081 Sum_probs=53.5
Q ss_pred CCCCCccccCHHHHHHHHHHHHhcc---CCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhh
Q 024859 6 SNGGPAFRFNPAEVTEMEGILQEHH---NAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRA 76 (261)
Q Consensus 6 ~~~~pRt~FT~~Ql~eLEk~F~~~~---n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~ 76 (261)
..++.||.||..|+.+|| .|.++. ++||+...|++||..++|+ +.|||+||||||+|+|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~----------e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 16 TTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVR----------RQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCC----------HHHHHHHHHTTSCCSCC
T ss_pred CCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcC----------cCcccccccccccCCCC
Confidence 358899999999999999 799821 4999999999999999976 59999999999999874
No 43
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=2e-17 Score=121.36 Aligned_cols=61 Identities=20% Similarity=0.217 Sum_probs=55.4
Q ss_pred CCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 8 GGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 8 ~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
.+.|+.||..|+..||+.|... ++||+...++.||..+||+ +.||++||||||+++|+...
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~-~~yp~~~~r~~LA~~l~l~----------~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKV-NKHPDPTTLCLIAAEAGLT----------EEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSS-CSSCCHHHHHHHHHHHTCC----------HHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCccCCHHHHHHHHHHHHcc-CCCCCHHHHHHHHHHHCcC----------HHHhhHHhHHHHHHHhhhcc
Confidence 4689999999999999999852 5999999999999999976 59999999999999998874
No 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=1.6e-17 Score=128.58 Aligned_cols=62 Identities=31% Similarity=0.375 Sum_probs=54.4
Q ss_pred CCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 6 ~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
..+++|+.||..|+..||+.|.. ++||+...+.+||..+||+ +.||++||||||+|+|++..
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~l~l~----------~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHF--NKYLSRARRVEIAATLELN----------ETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHTCC----------HHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCcCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHhCCC----------HHHhHHHHHHHhHHHhHHhc
Confidence 35788999999999999999988 6999999999999999976 59999999999999998763
No 45
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.69 E-value=1.6e-17 Score=117.77 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=46.7
Q ss_pred CCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHh
Q 024859 7 NGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIR 75 (261)
Q Consensus 7 ~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K 75 (261)
.+++|+.||..|+..||..|.. ++||+...++.||..+||+ +.||++||||||+++|
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~--~~yp~~~~r~~La~~~~l~----------~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRR--KQSLNSKEKEEVAKKCGIT----------PLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTSC----------HHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHh--CCCcCHHHHHHHHHHHCcC----------HHHHHHHHHHHHhccC
Confidence 5789999999999999999998 5999999999999999976 5999999999999875
No 46
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=7.1e-17 Score=125.45 Aligned_cols=62 Identities=11% Similarity=0.155 Sum_probs=54.9
Q ss_pred CCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhccC
Q 024859 7 NGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSIK 80 (261)
Q Consensus 7 ~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~~ 80 (261)
.+...-.||..||.+||+.|.. ++||+...|.+||..+||+ ++||++||||||+|||++..+
T Consensus 11 ~p~k~k~~t~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~lgLt----------e~qVkvWFqNRR~k~rk~~~~ 72 (89)
T 2ecb_A 11 TPQKFKEKTAEQLRVLQASFLN--SSVLTDEELNRLRAQTKLT----------RREIDAWFTEKKKSKALKEEK 72 (89)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHTCCC----------HHHHHHHHHHHHHHHHSCCSC
T ss_pred CchhhccCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHhCcC----------hHHCeecccccchHHHHHHHH
Confidence 3444558999999999999999 6999999999999999976 599999999999999987753
No 47
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=5.1e-17 Score=119.30 Aligned_cols=67 Identities=19% Similarity=0.178 Sum_probs=59.6
Q ss_pred CCCCCCCCccccCHHHHHHHHHHHHh-ccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 3 RPPSNGGPAFRFNPAEVTEMEGILQE-HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 3 rPp~~~~pRt~FT~~Ql~eLEk~F~~-~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
.++..+++|+.||..|+..||+.|.+ ..++||+..+++.||..+||+ +.||++||||||+++|+...
T Consensus 3 ~~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~----------~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 3 SGSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLT----------LLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp CCSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCC----------HHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcC----------HHHHHHHhHHHHhhcccccc
Confidence 35567899999999999999999987 346999999999999999976 59999999999999988764
No 48
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.69 E-value=2.3e-17 Score=127.62 Aligned_cols=62 Identities=19% Similarity=0.374 Sum_probs=55.2
Q ss_pred CCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 6 ~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
..++.|+.||..|+..||+.|+. ++||+...+.+||..+||+ +.||++||||||+|+|+...
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~l~L~----------~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAFVR--TQWPSPEEYDKLAKESGLA----------RTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHhCCC----------HHHeeecchhhhhHhhhhcc
Confidence 34688999999999999999998 6999999999999999976 59999999999999998764
No 49
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.2e-17 Score=121.59 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=54.4
Q ss_pred CCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 9 GPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 9 ~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
..|++||..||..||+.|.. ++||+...+++||..+||+ +.||++||||||+++|+...
T Consensus 10 ~~R~~ft~~Ql~~Le~~F~~--~~yp~~~~r~~La~~~~l~----------~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 10 IYKNKKSHEQLSALKGSFCR--NQFPGQSEVEHLTKVTGLS----------TREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH--SSSCCSHHHHHHHHHHCCC----------HHHHHHHHHHHHHHSSSCCS
T ss_pred CCCccCCHHHHHHHHHHHhc--CCCcCHHHHHHHHHHhCCC----------hHHhhHHhHHHhHHHHHhcc
Confidence 35899999999999999998 6999999999999999976 59999999999999988764
No 50
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=9.2e-17 Score=128.27 Aligned_cols=76 Identities=30% Similarity=0.475 Sum_probs=65.3
Q ss_pred CCCCCCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCC--------Cccc---cCCcccccchhhhhhhcc
Q 024859 2 GRPPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSE--------SPER---KGKIMVQMKQVWNWFQNR 70 (261)
Q Consensus 2 grPp~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~l--------S~~R---aGK~~lt~~QVk~WFQNR 70 (261)
|.++..++.||.||+.|+.+||+.|+. ++||+...|++||+.+|. ++.- -|+-.|++.||++|||||
T Consensus 1 ~~~~~~Rr~Rt~ft~~ql~~Le~~F~~--~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNR 78 (102)
T 2da6_A 1 GSSGSSGRNRFKWGPASQQILYQAYDR--QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANR 78 (102)
T ss_dssp CTTCCSCCCCCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecch
Confidence 788899999999999999999999999 699999999999999941 1111 144568899999999999
Q ss_pred hhhHhhhcc
Q 024859 71 RYAIRAKSI 79 (261)
Q Consensus 71 R~k~K~k~~ 79 (261)
|+++|++..
T Consensus 79 R~k~kr~~~ 87 (102)
T 2da6_A 79 RKEEAFRQK 87 (102)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhH
Confidence 999998874
No 51
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.66 E-value=1e-16 Score=117.72 Aligned_cols=63 Identities=27% Similarity=0.327 Sum_probs=55.9
Q ss_pred CCCccccCHHHHHHHHHHHHh-ccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhccC
Q 024859 8 GGPAFRFNPAEVTEMEGILQE-HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSIK 80 (261)
Q Consensus 8 ~~pRt~FT~~Ql~eLEk~F~~-~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~~ 80 (261)
+++|+.||..|+..||..|.. ..++||+...+..||..+||+ ++||++||||||+++|+...+
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~----------~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGIT----------VSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSC----------HHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcC----------HHHHHHHHHHHHhhccccccc
Confidence 678999999999999999942 137999999999999999976 599999999999999987753
No 52
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=4.5e-17 Score=116.62 Aligned_cols=61 Identities=26% Similarity=0.322 Sum_probs=54.0
Q ss_pred CCCCCccccCHHHHHHHHHHHHh-ccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhh
Q 024859 6 SNGGPAFRFNPAEVTEMEGILQE-HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRA 76 (261)
Q Consensus 6 ~~~~pRt~FT~~Ql~eLEk~F~~-~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~ 76 (261)
+.++.|+.||..|+..||+.|.+ ..++||+..++++||..+||+ +.||++||||||+++|+
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~----------~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGIT----------VSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSC----------HHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcC----------HHHHHHHHHHHHHHhcc
Confidence 35789999999999999999942 237999999999999999976 59999999999999876
No 53
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.65 E-value=8.4e-17 Score=133.40 Aligned_cols=64 Identities=22% Similarity=0.293 Sum_probs=54.1
Q ss_pred CCCCCCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhh
Q 024859 2 GRPPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 77 (261)
Q Consensus 2 grPp~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k 77 (261)
|.+...+++|+.||..|+..||+.|.. ++||+...|..||..+|++ +.||++||||||+|+|++
T Consensus 82 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~L~----------~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 82 GANERKRKRRTTISIAAKDALERHFGE--HSKPSSQEIMRMAEELNLE----------KEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -------CCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCC----------HHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCCcCccHHHHHHHHHHHHH--cCCCCHHHHHHHHHHhCCC----------hhhchhhhHhhhhhhhcc
Confidence 445566889999999999999999999 6999999999999999976 599999999999999875
No 54
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.3e-16 Score=121.04 Aligned_cols=61 Identities=16% Similarity=0.192 Sum_probs=54.3
Q ss_pred CCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhccC
Q 024859 8 GGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSIK 80 (261)
Q Consensus 8 ~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~~ 80 (261)
+..+-.||..||.+||+.|.. ++||+...|++||..++|+ +.||++||||||+|+|+...+
T Consensus 14 p~k~k~~t~~Ql~~Le~~F~~--~~yp~~~~r~~La~~~~l~----------~~qV~vWFqNRR~k~r~~~~~ 74 (89)
T 2dmp_A 14 PQKFKEKTQGQVKILEDSFLK--SSFPTQAELDRLRVETKLS----------RREIDSWFSERRKLRDSMEQA 74 (89)
T ss_dssp SSCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCC----------HHHHHHHHHHHHHHHHTSCSC
T ss_pred ccccccCCHHHHHHHHHHHcc--CCCCCHHHHHHHHHHhCCC----------HHhccHhhHhHHHHHHHHhHh
Confidence 445556999999999999999 6999999999999999976 599999999999999887753
No 55
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.64 E-value=5.2e-16 Score=117.55 Aligned_cols=67 Identities=25% Similarity=0.284 Sum_probs=58.9
Q ss_pred CCCCCCCccccCHHHHHHHHHHHHh-ccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhccC
Q 024859 4 PPSNGGPAFRFNPAEVTEMEGILQE-HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSIK 80 (261)
Q Consensus 4 Pp~~~~pRt~FT~~Ql~eLEk~F~~-~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~~ 80 (261)
.+..+++|+.||..|+..||+.|.+ ..++||+..++++||..+||+ ++||++||||||+++|+....
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs----------~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLS----------LLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcC----------HHHhhHHhhhhHhhhcHHHHH
Confidence 3456899999999999999999987 246999999999999999976 599999999999999877643
No 56
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.64 E-value=1.5e-16 Score=120.06 Aligned_cols=63 Identities=27% Similarity=0.327 Sum_probs=55.3
Q ss_pred CCCccccCHHHHHHHHHHHHh-ccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhccC
Q 024859 8 GGPAFRFNPAEVTEMEGILQE-HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSIK 80 (261)
Q Consensus 8 ~~pRt~FT~~Ql~eLEk~F~~-~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~~ 80 (261)
+++|+.||..|+..||+.|.+ ..++||+..+++.||..+||+ +.||++||||||+|+|+...+
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~----------~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGIT----------VSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSC----------HHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcC----------HHHHHHHHHHHHHHhhhcccc
Confidence 678999999999999999942 127999999999999999976 599999999999999987753
No 57
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.64 E-value=2e-16 Score=111.93 Aligned_cols=57 Identities=26% Similarity=0.320 Sum_probs=51.6
Q ss_pred ccccCHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhh
Q 024859 11 AFRFNPAEVTEMEGILQEH-HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 77 (261)
Q Consensus 11 Rt~FT~~Ql~eLEk~F~~~-~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k 77 (261)
+++||..|+..||+.|..+ .++||+..+++.||..+||+ +.||++||||||+++|+.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~----------~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLS----------RIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcC----------HHHHHHHHHHHHcccccC
Confidence 6899999999999999982 14999999999999999976 499999999999999864
No 58
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=6.4e-17 Score=120.13 Aligned_cols=60 Identities=15% Similarity=0.253 Sum_probs=53.9
Q ss_pred CCCCccccCHHHHHHHHHHH-HhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhc
Q 024859 7 NGGPAFRFNPAEVTEMEGIL-QEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 78 (261)
Q Consensus 7 ~~~pRt~FT~~Ql~eLEk~F-~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~ 78 (261)
..+.+.+||..|+.+||+.| .. ++||+...|++||..+|++ +.||++||||||+|+|+..
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~--~~yp~~~~r~~LA~~l~l~----------e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSV--TKYPDEKRLKGLSKQLDWS----------VRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHT--CSSCCHHHHHHHHHHTTCC----------HHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhc--CCCcCHHHHHHHHHHhCCC----------hhhcchhhhhcccCCCCCC
Confidence 35678889999999999999 66 6999999999999999976 5999999999999998654
No 59
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.64 E-value=2.9e-16 Score=116.59 Aligned_cols=65 Identities=28% Similarity=0.379 Sum_probs=56.0
Q ss_pred CCCCCCCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhccC
Q 024859 1 MGRPPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSIK 80 (261)
Q Consensus 1 mgrPp~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~~ 80 (261)
||-|-- .-+..|..|+.+||+.|.. ++||+...|.+||.++||+ ++||++||||||+|+|++...
T Consensus 1 ~~~~~~---~~~~~t~~ql~~LE~~F~~--~~yp~~~~r~~LA~~l~Lt----------e~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 1 MGHHHH---HHSHMSHTQVIELERKFSH--QKYLSAPERAHLAKNLKLT----------ETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCSSC---SCCCCCHHHHHHHHHHHHH--CSCCCHHHHHHHHHHTTCC----------HHHHHHHHHHHHHHSCCSSSS
T ss_pred CCCCCC---CCCcCCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhCCC----------hhheeecchhhhhhhhhhhhh
Confidence 555532 3467899999999999988 6999999999999999976 599999999999999987753
No 60
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.63 E-value=2.8e-16 Score=130.14 Aligned_cols=63 Identities=21% Similarity=0.517 Sum_probs=57.5
Q ss_pred CCCCCCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhh
Q 024859 2 GRPPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRA 76 (261)
Q Consensus 2 grPp~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~ 76 (261)
|.|...+++|+.||..|+..||+.|.. ++||+...+..||..+||+ +.||++||||||+|+|+
T Consensus 88 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~LA~~l~L~----------~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 88 GEPSKKRKRRTSFTPQAIEALNAYFEK--NPLPTGQEITEMAKELNYD----------REVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SSCCCCCCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTSC----------HHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCcccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHCCC----------HHHhHHHHHHHHhccCC
Confidence 345567889999999999999999999 6999999999999999976 59999999999999985
No 61
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.63 E-value=1.9e-16 Score=117.96 Aligned_cols=52 Identities=13% Similarity=0.332 Sum_probs=48.4
Q ss_pred cCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhh
Q 024859 14 FNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 77 (261)
Q Consensus 14 FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k 77 (261)
=|.+|+.+||+.|.. ++||+..+|++||..+||| ++||++||||||+|+|+.
T Consensus 11 ~~~~Ql~~LE~~F~~--~~YPs~~er~eLA~~tgLt----------~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 11 KTKEQIAHLKASFLQ--SQFPDDAEVYRLIEVTGLA----------RSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CCHHHHHHHHHHHHG--GGSCCHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhCcC----------HHHhhHhcccchhhhhcc
Confidence 478999999999999 6999999999999999976 599999999999999864
No 62
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=3.2e-16 Score=114.18 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=53.1
Q ss_pred CCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhh
Q 024859 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 77 (261)
Q Consensus 6 ~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k 77 (261)
+++.++..++.+|+..||+.|.. ++||+...|.+||..+||+ ++||++||||||+|.++.
T Consensus 2 ~sg~~~~~p~~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~l~L~----------e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 2 SSGSSGQPPLKNLLSLLKAYYAL--NAQPSAEELSKIADSVNLP----------LDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCSCSCCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHTCC----------HHHHHHHHHHHHHTCSCS
T ss_pred CCCCCCCCccHHHHHHHHHHHhc--CCCcCHHHHHHHHHHhCcC----------hhhcCcchhcccCCCCCC
Confidence 35666777899999999999988 6999999999999999976 599999999999987654
No 63
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.62 E-value=2.8e-16 Score=131.68 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=53.3
Q ss_pred CCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhh
Q 024859 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 77 (261)
Q Consensus 6 ~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k 77 (261)
..++.|+.||..|+..||+.|.. ++||+...|..||..+|++ +.||++||||||+|+|++
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~L~----------~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFME--NQKPTSEDITLIAEQLNME----------KEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCC----------HHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHCCC----------hHHhhHhhHHhhhhhhcc
Confidence 45889999999999999999999 6999999999999999976 599999999999999975
No 64
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.62 E-value=2.5e-16 Score=133.05 Aligned_cols=62 Identities=18% Similarity=0.205 Sum_probs=51.0
Q ss_pred CCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 6 ~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
..+++|+.||..|+..||+.|.. ++||+...|..||..++|+ ++||++||||||+|+|+...
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~--~~yp~~~~r~~LA~~l~L~----------~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLK--CPKPSAHEITGLADSLQLE----------KEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp --------CCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCC----------HHHHHHHHHHHHHHHTBSCC
T ss_pred cCCCCceeccHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHCCC----------hhhhhhhhHHhhHHHhhccC
Confidence 45889999999999999999999 6999999999999999976 59999999999999998774
No 65
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.61 E-value=3.1e-16 Score=123.59 Aligned_cols=74 Identities=26% Similarity=0.396 Sum_probs=54.7
Q ss_pred CCCCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhC--------CCcccc---CCcccccchhhhhhhcchh
Q 024859 4 PPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFS--------ESPERK---GKIMVQMKQVWNWFQNRRY 72 (261)
Q Consensus 4 Pp~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~--------lS~~Ra---GK~~lt~~QVk~WFQNRR~ 72 (261)
+...++.||.||+.|+..||+.|+. ++||+...|++||+.+| +++.-+ |.-.|++.||++||||||+
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~--~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~ 83 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYER--QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 83 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHH
Confidence 3456899999999999999999999 69999999999999944 111111 2233888999999999999
Q ss_pred hHhhhcc
Q 024859 73 AIRAKSI 79 (261)
Q Consensus 73 k~K~k~~ 79 (261)
+.|++..
T Consensus 84 k~k~k~~ 90 (99)
T 1lfb_A 84 EEAFRHK 90 (99)
T ss_dssp TTSCCC-
T ss_pred HHHHhch
Confidence 9877764
No 66
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.61 E-value=7.8e-16 Score=116.77 Aligned_cols=60 Identities=25% Similarity=0.284 Sum_probs=53.7
Q ss_pred CCCCccccCHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhh
Q 024859 7 NGGPAFRFNPAEVTEMEGILQEH-HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRA 76 (261)
Q Consensus 7 ~~~pRt~FT~~Ql~eLEk~F~~~-~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~ 76 (261)
.++.|+.||..|+..||+.|..+ .++||+..+++.||..+||+ ++||++||||||+|+|.
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~----------~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLS----------RIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcC----------HHHHHHHHHHHHhhccC
Confidence 46789999999999999999881 14999999999999999976 59999999999999873
No 67
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.60 E-value=9.1e-16 Score=115.84 Aligned_cols=62 Identities=24% Similarity=0.244 Sum_probs=53.5
Q ss_pred CCCccccCHHHHHHHHHHHHh-ccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 8 GGPAFRFNPAEVTEMEGILQE-HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 8 ~~pRt~FT~~Ql~eLEk~F~~-~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
++.+++||..|+..||+.|.. ..++||+...++.||..+||+ +.||++||||||+++|+...
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt----------~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLS----------RIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCC----------HHHcccccHHHHcccccccc
Confidence 456777999999999999997 124999999999999999976 59999999999999998764
No 68
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.60 E-value=5.7e-16 Score=129.28 Aligned_cols=63 Identities=22% Similarity=0.401 Sum_probs=53.3
Q ss_pred CCCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 5 PSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 5 p~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
+..+++|+.||..|+..||+.|.. ++||+...|++||..+||+ +.||++||||||+++|+...
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~la~~l~L~----------~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKE--NKRPSKELQITISQQLGLE----------LSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCC----------HHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHCcC----------HHHhhhcChhhhccccccCC
Confidence 456899999999999999999999 5999999999999999976 59999999999999987764
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.59 E-value=6.5e-16 Score=113.91 Aligned_cols=52 Identities=15% Similarity=0.360 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhc
Q 024859 16 PAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 78 (261)
Q Consensus 16 ~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~ 78 (261)
..|+.+||+.|... ++||+...|.+||..+||+ +.||++||||||+|+|+..
T Consensus 9 ~~~~~~LE~~F~~~-~~yp~~~~r~~LA~~l~Lt----------erQVkvWFqNRR~k~k~~~ 60 (64)
T 1x2m_A 9 AQPNAILEKVFTAI-TKHPDEKRLEGLSKQLDWD----------VRSIQRWFRQRRNQEKPSG 60 (64)
T ss_dssp SCHHHHHHHHHHTT-CSSCCHHHHHHHHHHHCSC----------HHHHHHHHHHHHHHSCCSS
T ss_pred chHHHHHHHHHHHc-CCCcCHHHHHHHHHHhCCC----------HHHHHHHHHHHHhccCCCC
Confidence 35799999999653 6999999999999999976 5999999999999997543
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.55 E-value=2.8e-15 Score=125.19 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=54.9
Q ss_pred CCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhh
Q 024859 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 77 (261)
Q Consensus 6 ~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k 77 (261)
..++.|+.||..|+..||+.|.. ++||+...|..||..+|++ +.||++||||||+|+|+.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~--~~yps~~~r~~LA~~l~L~----------~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLK--SPKPSLQQITHIANQLGLE----------KDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTT--CSCCCHHHHHHHHHHTTCC----------HHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHcc--CCCCCHHHHHHHHHHcCCC----------hhheeeccccccccccCC
Confidence 45788999999999999999987 6999999999999999976 499999999999999874
No 71
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=6.2e-15 Score=111.23 Aligned_cols=60 Identities=15% Similarity=0.371 Sum_probs=54.9
Q ss_pred CCCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHh
Q 024859 5 PSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIR 75 (261)
Q Consensus 5 p~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K 75 (261)
...+++||.||.+|+..|+..|+.. +.||+.+.|+.||..+||++ .+|++||||||+-.+
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~-~~yPd~~~r~~La~~tGL~~----------~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDV-GLYPDQEAIHTLSAQLDLPK----------HTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHH-CSCCCHHHHHHHHHHSCCCH----------HHHHHHHHHHHHHCC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhCCCH----------HHHHHhhccceeeec
Confidence 3568999999999999999999995 59999999999999999875 999999999999764
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.49 E-value=2.7e-14 Score=104.33 Aligned_cols=57 Identities=32% Similarity=0.371 Sum_probs=48.8
Q ss_pred ccCHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 13 RFNPAEVTEMEGILQEH-HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 13 ~FT~~Ql~eLEk~F~~~-~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
.||.+|+..||..|.++ .++||+..++++||..+||+ +.||++||||||+++|+...
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~----------~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLT----------ILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCC----------HHHHHHHHHHHHHHHHSCC-
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcC----------HHHhhhhhHHHHHHHhHHHH
Confidence 79999999999999932 37999999999999999976 49999999999999987653
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.41 E-value=4.7e-14 Score=122.96 Aligned_cols=69 Identities=26% Similarity=0.378 Sum_probs=56.4
Q ss_pred CCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCC----------Ccc-ccCCcccccchhhhhhhcchhhH
Q 024859 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSE----------SPE-RKGKIMVQMKQVWNWFQNRRYAI 74 (261)
Q Consensus 6 ~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~l----------S~~-RaGK~~lt~~QVk~WFQNRR~k~ 74 (261)
..++.||.||+.|+.+||+.|.. ++||+...|++||..+|. +.+ --|+-.||+.||++||||||++.
T Consensus 114 k~rr~R~~ft~~ql~~Le~~F~~--~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 114 KGRRNRFKWGPASQQILFQAYER--QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHH--HCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred cCCCCCcccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 34889999999999999999999 599999999999999981 111 12566688999999999999997
Q ss_pred hh
Q 024859 75 RA 76 (261)
Q Consensus 75 K~ 76 (261)
|.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 64
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.35 E-value=7.2e-13 Score=118.07 Aligned_cols=67 Identities=30% Similarity=0.441 Sum_probs=56.9
Q ss_pred CCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCC--------Ccc---ccCCcccccchhhhhhhcchhhH
Q 024859 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSE--------SPE---RKGKIMVQMKQVWNWFQNRRYAI 74 (261)
Q Consensus 6 ~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~l--------S~~---RaGK~~lt~~QVk~WFQNRR~k~ 74 (261)
..++.||.||+.|+.+||+.|.. ++||+...|++||+.+|. ++. .-|+..||+.||++||||||++.
T Consensus 141 k~RR~R~~ft~~ql~~Le~~F~~--~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 141 KMRRNRFKWGPASQQILYQAYDR--QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp -CCCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 35899999999999999999999 699999999999999983 211 22566799999999999999863
No 75
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.28 E-value=1.7e-12 Score=116.81 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=49.6
Q ss_pred CccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHh
Q 024859 10 PAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIR 75 (261)
Q Consensus 10 pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K 75 (261)
.+..|+..|+.+||+.|+. ++||++.+|++||.++||+ ++||++||||||+|+|
T Consensus 368 ~~~~~~~~q~~~Le~~f~~--~~yp~~~~~~~la~~~~l~----------~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 368 AAAAISPQARAFLEQVFRR--KQSLNSKEKEEVAKKCGIT----------PLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHCSSCHHHHHHHHHHHHH--CSCCCHHHHHHHHHHHTSC----------HHHHHHHHHHHHCCCC
T ss_pred hhhhhcchHHHHHHHHHhc--CCCcCHHHHHHHHHHHCcC----------HHHhhHhhhhcccccC
Confidence 4567999999999999988 6999999999999999976 5999999999999875
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.19 E-value=1.5e-11 Score=96.08 Aligned_cols=59 Identities=27% Similarity=0.327 Sum_probs=51.6
Q ss_pred ccccCHHHHHHHHHHHHh-ccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 11 AFRFNPAEVTEMEGILQE-HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 11 Rt~FT~~Ql~eLEk~F~~-~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
..-|+..++..|+.-|.+ ..++||+.+++++||..+||+ ++||++||||||.++++...
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt----------~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLS----------TLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSC----------HHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcC----------HHHHHHHHHHHHHHhhhHHH
Confidence 456999999999999976 346999999999999999976 59999999999999887653
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=6.5e-11 Score=89.40 Aligned_cols=48 Identities=15% Similarity=0.274 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHh
Q 024859 16 PAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIR 75 (261)
Q Consensus 16 ~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K 75 (261)
.+|+..||+.|.. |.+|+.+++++||+++||+. ++|++||||||....
T Consensus 14 k~ql~~Lk~yF~~--n~~Ps~eei~~LA~~lgL~~----------~VVrVWFqNrRa~~~ 61 (71)
T 2da7_A 14 KDHMSVLKAYYAM--NMEPNSDELLKISIAVGLPQ----------EFVKEWFEQRKVYQY 61 (71)
T ss_dssp THHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCCH----------HHHHHHHhhcccccc
Confidence 5789999999999 79999999999999999874 899999999998654
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.58 E-value=7.5e-09 Score=69.23 Aligned_cols=19 Identities=37% Similarity=0.735 Sum_probs=17.2
Q ss_pred chhhhhhhcchhhHhhhcc
Q 024859 61 KQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 61 ~QVk~WFQNRR~k~K~k~~ 79 (261)
.||++||||||+|||++..
T Consensus 1 rQVkIWFQNRRaK~Kk~~~ 19 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVF 19 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHH
T ss_pred CCceeccHHHHHHHHHHhH
Confidence 4899999999999998874
No 79
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=96.16 E-value=0.036 Score=45.57 Aligned_cols=95 Identities=15% Similarity=0.252 Sum_probs=63.4
Q ss_pred CcceEEeeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCccceeccccccccccccCcccccccccCCceEEEEe
Q 024859 141 TFMEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQRSLPCEASECVAVLPGDLILCFQ 220 (261)
Q Consensus 141 ~~~efEa~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~~~vR~rS~ple~~eC~~v~~Gd~vlcf~ 220 (261)
.+|+-|.+. .+||||-.-+ .- -.+.++.|.|.+- -..+++|.+. .+|...-| ++. ..+..||-|-+|.
T Consensus 4 ~~~~VEV~~-~~G~~y~a~V--~~----v~~d~~~V~f~n~-w~~~~~vp~~-~vRlpP~~--~~~-~~f~~gd~VEV~~ 71 (128)
T 3h8z_A 4 QGLPVEVRG-SNGAFYKGFV--KD----VHEDSVTIFFENN-WQSERQIPFG-DVRLPPPA--DYN-KEITEGDEVEVYS 71 (128)
T ss_dssp TTCEEEEEC-TTSCEEEEEE--EE----ECSSEEEEEETTC-TTCCEEEEGG-GEECCCCC-------CCCTTCEEEEEE
T ss_pred cccEEEEec-CCCCEEEEEE--EE----EeCCcEEEEEccc-cCcceEechh-hEEcCCCc--ccc-cCCCCCCEEEEEe
Confidence 467778776 7799998443 22 3578899999641 1225566666 77775544 444 4789999999998
Q ss_pred ecC--ccceeeeeEEEeeeeccCCCCcceeEEEEEEcc
Q 024859 221 EGK--DQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDH 256 (261)
Q Consensus 221 e~~--~~a~y~DA~V~~i~r~~Hd~~~C~C~F~Vr~~h 256 (261)
..+ +-.-||=|.|..++ | +.+.|.|+-
T Consensus 72 ~~~d~ep~gWw~a~I~~~k-------g--~f~~V~y~~ 100 (128)
T 3h8z_A 72 RANEQEPCGWWLARVRMMK-------G--DFYVIEYAA 100 (128)
T ss_dssp CC---CCCEEEEEEEEEEE-------T--TEEEEEETT
T ss_pred cCCCCCcCccEEEEEEEee-------C--CEEEEEEcC
Confidence 743 33469999999887 2 467777654
No 80
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=96.12 E-value=0.018 Score=51.49 Aligned_cols=93 Identities=17% Similarity=0.354 Sum_probs=66.5
Q ss_pred EEeeccCCCceeehhhhhhccccc-----CCCCeEEEEecCCCCCccceeccccccccccccCcccccccccCCceEEEE
Q 024859 145 FEAKSARDGAWYDVSAFLAQRNFD-----TADPEVQVRFAGFGAEEDEWVNIKRHVRQRSLPCEASECVAVLPGDLILCF 219 (261)
Q Consensus 145 fEa~S~~D~AWydv~~fl~~R~l~-----~ge~ev~Vrf~gFg~eedewvnv~~~vR~rS~ple~~eC~~v~~Gd~vlcf 219 (261)
-+||-...||||...+--=.|... +-+.-+.|.|.+|.+...-=+.++ .||+|+.. ...=..+..|..|++.
T Consensus 9 vd~~d~~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~~~~~~~~~~-~irprar~--~~~~~~l~~g~~vm~n 85 (226)
T 3ask_A 9 VDARDTNMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPENGVVQMNSR-DVRARART--IIKWQDLEVGQVVMLN 85 (226)
T ss_dssp EEEECTTTCCEEEEEEEEEEECC------CCCEEEEEEETTCGGGCEEEEEGG-GEEECCCC--BCCGGGCCTTCEEEEE
T ss_pred EEeeecCCCceeEEEEEEEeccccccCCCCCceEEEeecccCcccCceecccc-cccccccc--cCCccccccCcEEEEe
Confidence 367888899999877665555332 233567789999977765555555 68888755 4455678999999877
Q ss_pred e---ecCccceeeeeEEEeeeecc
Q 024859 220 Q---EGKDQALYFDAHVLDAQRRR 240 (261)
Q Consensus 220 ~---e~~~~a~y~DA~V~~i~r~~ 240 (261)
- +-.+...||||+|+.+.-.+
T Consensus 86 yn~~~~~~~G~~y~~~I~~~~~~r 109 (226)
T 3ask_A 86 YNPDNPKERGFWYDAEISRKRETR 109 (226)
T ss_dssp ECTTSTTSCCEEEEEEEEEEEECS
T ss_pred cccCCccccCceeehhhhhhhhcc
Confidence 6 34567899999999887543
No 81
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=95.92 E-value=0.0067 Score=45.75 Aligned_cols=56 Identities=25% Similarity=0.501 Sum_probs=37.8
Q ss_pred EeeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCccc-eecc---ccccccccccCcccccc
Q 024859 146 EAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDE-WVNI---KRHVRQRSLPCEASECV 208 (261)
Q Consensus 146 Ea~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eede-wvnv---~~~vR~rS~ple~~eC~ 208 (261)
=|+-+.||.||-+.+.- + .++..+.|.|.+||+.+.- .-++ .. ...++|.++.+|.
T Consensus 35 ~a~~~~d~~wyRA~I~~---~--~~~~~~~V~fvDyGn~e~v~~~~lr~l~~--~f~~lP~qA~~Cs 94 (94)
T 3fdr_A 35 AAPLPTNGSWYRARVLG---T--LENGNLDLYFVDFGDNGDCPLKDLRALRS--DFLSLPFQAIECS 94 (94)
T ss_dssp EEEETTTTEEEEEEEEE---E--CTTSCEEEEETTTCCEEEECGGGCEECCG--GGGCSCCCCCCC-
T ss_pred EEEECCCCeEEEEEEEE---E--CCCCeEEEEEEcCCCeEEEEHHHhhhcCH--HHhcCCcceEEeC
Confidence 35557799999987532 1 1346899999999998732 1222 22 2358999999995
No 82
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.012 Score=45.81 Aligned_cols=43 Identities=16% Similarity=0.384 Sum_probs=34.4
Q ss_pred CCCceeehhhhhhcccccCCCCeEEEEecCCCCCccceeccccccc
Q 024859 151 RDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVR 196 (261)
Q Consensus 151 ~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~~~vR 196 (261)
.||.||.+.+ |.-|. ..|+.+++|||.||..--||||..- +|.
T Consensus 34 ~~~~~y~AkI-l~ir~-~~~~~~YyVHY~g~NkRlDEWV~~~-rl~ 76 (92)
T 2ro0_A 34 KNDEERLAEI-LSINT-RKAPPKFYVHYVNYNKRLDEWITTD-RIN 76 (92)
T ss_dssp ETTEEEEEEE-EEEEC-SSSSCEEEEEETTSCTTSCEEEEGG-GEE
T ss_pred ECCEEEEEEE-EEEEE-cCCCcEEEEEeCCcCcccccccCHh-Hcc
Confidence 4999999886 44443 3577899999999999999999986 443
No 83
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.89 E-value=0.015 Score=44.86 Aligned_cols=46 Identities=17% Similarity=0.382 Sum_probs=35.4
Q ss_pred CCCceeehhhhhhcccccCCCCeEEEEecCCCCCccceecccccccccc
Q 024859 151 RDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQRS 199 (261)
Q Consensus 151 ~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~~~vR~rS 199 (261)
.++-||...+ |.-|. ..|+.+++|||.||...-||||..- +|+..+
T Consensus 25 ~~~~~y~AkI-l~i~~-~~~~~~YyVHY~g~NkRlDEWV~~~-rl~~~~ 70 (87)
T 2eko_A 25 NEDEWPLAEI-LSVKD-ISGRKLFYVHYIDFNRRLDEWVTHE-RLDLKK 70 (87)
T ss_dssp CCEECCEEEE-EEECC-SSSCCCEEEEECSSCSCCCEEECTT-TBCGGG
T ss_pred CCCeEEEEEE-EEEEE-cCCCcEEEEEeCCCCcccccccCHh-Hccccc
Confidence 4888998775 44443 4577899999999999999999986 555444
No 84
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=94.35 E-value=0.031 Score=42.31 Aligned_cols=49 Identities=24% Similarity=0.523 Sum_probs=42.3
Q ss_pred CcceEEeeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 141 TFMEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 141 ~~~efEa~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
..+.|+ ..++-.|.|...|.+|+...|..+++|+..||+.+++.|....
T Consensus 12 E~~~~~---~~~~e~yeVE~Ild~R~~~~g~~~YlVKWkGy~~~~~TWEp~~ 60 (81)
T 4hae_A 12 ENLYFQ---GASGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEH 60 (81)
T ss_dssp CCEEEE---CTTSCEEEEEEEEEEEECTTSCEEEEEEETTCCGGGCEEEEGG
T ss_pred cccccc---CCCCCEEEEEEEEEeEECCCCeEEEEEEECCCCCCCCeEEeHH
Confidence 456676 3467799999999999988899999999999999999998765
No 85
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=94.29 E-value=0.049 Score=42.74 Aligned_cols=41 Identities=17% Similarity=0.369 Sum_probs=33.6
Q ss_pred cCCCceeehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 150 ARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 150 ~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
..||.||.+.+ |.-|. ..|+.+++|+|.||-.--||||..-
T Consensus 35 ~~~~~~yeAeI-l~ir~-~~g~~~YYVHY~g~NkRlDEWV~~~ 75 (94)
T 2rnz_A 35 QKNDEERLAEI-LSINT-RKAPPKFYVHYVNYNKRLDEWITTD 75 (94)
T ss_dssp ECSSCEEEEEE-EEEEC-SSSSCEEEEECTTSCSTTCEEEETT
T ss_pred EECCEEEEEEE-EEEEE-cCCCcEEEEEeCCcCcccccccCHH
Confidence 35999999886 34443 4577999999999999999999986
No 86
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=94.26 E-value=0.025 Score=44.43 Aligned_cols=40 Identities=28% Similarity=0.427 Sum_probs=32.6
Q ss_pred CCceeehhhhhhcccccC--CCCeEEEEecCCCCCccceeccc
Q 024859 152 DGAWYDVSAFLAQRNFDT--ADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 152 D~AWydv~~fl~~R~l~~--ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
||.||.+.+ |.-|.-.. |..+++|||.||-.--||||..-
T Consensus 27 dg~~yeAeI-l~ir~~~~~~~~~~YYVHY~g~NkRlDEWV~~~ 68 (92)
T 2bud_A 27 DGTVHRGQV-LQSRTTENAAAPDEYYVHYVGLNRRLDGWVGRH 68 (92)
T ss_dssp TSCEEEEEE-EEEECTTTCSSCCEEEEECSSSCTTTCEEEETT
T ss_pred CCCEEEEEE-EEEeeccCCCCCcEEEEEeCCcccccccccCHH
Confidence 899999876 45554442 66799999999999999999864
No 87
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=94.24 E-value=0.1 Score=39.96 Aligned_cols=48 Identities=21% Similarity=0.339 Sum_probs=36.7
Q ss_pred CcceEEeeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCccceecccc
Q 024859 141 TFMEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKR 193 (261)
Q Consensus 141 ~~~efEa~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~~ 193 (261)
-.|-+||... .+.||.+-+. +....+..|+|||-|+...-|||+++..
T Consensus 22 vGmkLEA~D~-~~~~~~a~i~----~v~~~~~~v~VHfdGW~~~yDeWv~~dS 69 (88)
T 2eqm_A 22 IGARLEALDY-LQKWYPSRIE----KIDYEEGKMLVHFERWSHRYDEWIYWDS 69 (88)
T ss_dssp SSCEEEEECT-TSCEEEEEEE----EEETTTTEEEEEESSSTTTEEEEEETTS
T ss_pred CCCEEEEEcC-CCCeeEEEEE----EEeccCCEEEEEECCCCCcccEEeeCCC
Confidence 3577898754 4689976654 2344457999999999999999999873
No 88
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=94.05 E-value=0.026 Score=38.81 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=26.5
Q ss_pred EeeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCcc
Q 024859 146 EAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEED 186 (261)
Q Consensus 146 Ea~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eed 186 (261)
-|+-+.||.||...+.-- ..+ +..+.|.|.+||+.|.
T Consensus 9 ~A~~s~Dg~wYrA~I~~i---~~~-~~~~~V~fvDYGn~e~ 45 (54)
T 3s6w_A 9 FALYWEDNKFYRAEVEAL---HSS-GMTAVVKFIDYGNYEE 45 (54)
T ss_dssp EEEETTTTEEEEEEEEEC-----C-CSEEEEEETTTCCEEE
T ss_pred EEEECCCCCEEEEEEEEE---eCC-CCEEEEEEEccCCeEE
Confidence 466688999999874321 112 3689999999999864
No 89
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=93.97 E-value=0.13 Score=43.95 Aligned_cols=90 Identities=18% Similarity=0.360 Sum_probs=60.7
Q ss_pred EEeeccCCCceeehhhhhhccccc--------------CCCCeEEEEecCCCCCccceeccccccccccccCcccccccc
Q 024859 145 FEAKSARDGAWYDVSAFLAQRNFD--------------TADPEVQVRFAGFGAEEDEWVNIKRHVRQRSLPCEASECVAV 210 (261)
Q Consensus 145 fEa~S~~D~AWydv~~fl~~R~l~--------------~ge~ev~Vrf~gFg~eedewvnv~~~vR~rS~ple~~eC~~v 210 (261)
-.||-..-|||+...+---.|.-. +-+.-+.|.|.+|.+..--=+.+ +.||+|..-+= .=+.|
T Consensus 17 VDarD~~~GAWFEA~Iv~Vtr~~~~~~~p~~s~~~~~~~edviYhVkyddype~gvv~~~~-~~iRpRARt~l--~w~~L 93 (161)
T 3db3_A 17 VDARDTNMGAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYPENGVVQMNS-RDVRARARTII--KWQDL 93 (161)
T ss_dssp EEEECTTTCCEEEEEEEEEEEC-----------------CCEEEEEEESSCGGGCEEEEEG-GGEECCCCCBC--CGGGC
T ss_pred eeeeccCCCcceEEEEEEEEecCCCCCCcccccccCCCcCceEEEEEeccCccCCeEecch-hccccceEEec--cHHHC
Confidence 467788889998755332222110 12356789999987766544455 48898887543 44689
Q ss_pred cCCceEEEE---eecCccceeeeeEEEeee
Q 024859 211 LPGDLILCF---QEGKDQALYFDAHVLDAQ 237 (261)
Q Consensus 211 ~~Gd~vlcf---~e~~~~a~y~DA~V~~i~ 237 (261)
.+|+.|..- -+-++-..||||.|..+.
T Consensus 94 ~vGqvVMvNYN~d~PkerGfWYDaeI~~~~ 123 (161)
T 3db3_A 94 EVGQVVMLNYNPDNPKERGFWYDAEISRKR 123 (161)
T ss_dssp CTTCEEEEEECSSSTTSCCEEEEEEEEEEE
T ss_pred CcCcEEEEecCCCCccccceeEEEEEeeeh
Confidence 999999843 335577899999999874
No 90
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=93.95 E-value=0.13 Score=41.49 Aligned_cols=47 Identities=17% Similarity=0.463 Sum_probs=31.8
Q ss_pred cccCCceEEEEeecC-ccceeeeeEEEeeeeccCCCCcceeEEEEEEc
Q 024859 209 AVLPGDLILCFQEGK-DQALYFDAHVLDAQRRRHDVRGCRCRFLVRYD 255 (261)
Q Consensus 209 ~v~~Gd~vlcf~e~~-~~a~y~DA~V~~i~r~~Hd~~~C~C~F~Vr~~ 255 (261)
....|+.||||+.+. .-.+.|||.|++|.-..=+...---.++|-|.
T Consensus 19 ~F~~gEkVLc~h~d~~kg~llYeAKIl~v~~~~~~~~~~~~~Y~VHY~ 66 (110)
T 3oa6_A 19 KFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFN 66 (110)
T ss_dssp CSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEET
T ss_pred ccCCCCEEEEEecCCCCCcccEEEEEEEEEeccCCcCCcccEEEEEEC
Confidence 356899999999543 34678999999997554222222335777764
No 91
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=93.85 E-value=0.039 Score=38.76 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=29.1
Q ss_pred EeeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 146 EAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 146 Ea~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
-|+-+.||.||...+.- + ......+.|.|.+||+.| -|++.
T Consensus 11 ~A~~s~Dg~wYrA~I~~---i-~~~~~~~~V~f~DYGn~e--~v~~~ 51 (59)
T 1mhn_A 11 SAIWSEDGCIYPATIAS---I-DFKRETCVVVYTGYGNRE--EQNLS 51 (59)
T ss_dssp EEECTTTSCEEEEEEEE---E-ETTTTEEEEEETTTTEEE--EEEGG
T ss_pred EEEECCCCCEEEEEEEE---E-cCCCCEEEEEEEcCCCEE--EEcHH
Confidence 46667899999987542 1 122378999999999875 44444
No 92
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=93.80 E-value=0.052 Score=41.97 Aligned_cols=57 Identities=25% Similarity=0.512 Sum_probs=38.8
Q ss_pred eeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCccc-eecccccc--ccccccCccccccc
Q 024859 147 AKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDE-WVNIKRHV--RQRSLPCEASECVA 209 (261)
Q Consensus 147 a~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eede-wvnv~~~v--R~rS~ple~~eC~~ 209 (261)
|+-+.||.||-+.+.- +. ++..+.|.|..||+.+.- +-++| .+ +..++|.++.+|.-
T Consensus 41 a~~~~d~~wyRA~V~~---~~--~~~~~~V~fvDyGn~e~v~~~~Lr-~l~~~f~~lP~qA~~c~L 100 (110)
T 2diq_A 41 APLPTNGSWYRARVLG---TL--ENGNLDLYFVDFGDNGDCPLKDLR-ALRSDFLSLPFQAIECSL 100 (110)
T ss_dssp ECCTTTCSCEEEEECC---CC--SSSCEEEEETTTCCEEEECGGGCE-ECCHHHHSSCCSSCCSCS
T ss_pred EEECCCCeEEEEEEEE---EC--CCCeEEEEEEeCCCeEEEehHHhh-cCcHHHhCCCcceEEEEE
Confidence 5566799999887442 11 236899999999998632 22233 11 23579999999974
No 93
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=93.31 E-value=0.058 Score=40.21 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=31.7
Q ss_pred EEeeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCccceeccccccccccccCc
Q 024859 145 FEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQRSLPCE 203 (261)
Q Consensus 145 fEa~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~~~vR~rS~ple 203 (261)
--|+-+.||.||...+.- +..++ ..+.|.|.+||+.+. |++. ..|.||-+
T Consensus 24 C~A~ys~Dg~wYRA~I~~---i~~~~-~~~~V~fvDYGN~e~--V~~~---~Lr~l~~~ 73 (77)
T 3pnw_C 24 CFALYWEDNKFYRAEVEA---LHSSG-MTAVVKFIDYGNYEE--VLLS---NIKPIQTE 73 (77)
T ss_dssp EEEEETTTTEEEEEEEEE---ECTTS-SEEEEEETTTCCEEE--EEGG---GEECC---
T ss_pred EEEEECCCCCEEEEEEEE---EeCCC-CEEEEEEEcCCCeEE--EeHH---HeEECChh
Confidence 346668899999987432 11222 689999999999664 5544 34455554
No 94
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=93.19 E-value=0.035 Score=41.60 Aligned_cols=40 Identities=23% Similarity=0.453 Sum_probs=31.5
Q ss_pred CCCceeehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 151 RDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 151 ~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
++|-||...+ |.-+ ...|+.+.+|+|.||...-||||..-
T Consensus 20 k~~~~y~AkI-l~i~-~~~~~~~Y~VHY~gwnkr~DEWV~~~ 59 (76)
T 2lcc_A 20 KTQKIYEASI-KSTE-IDDGEVLYLVHYYGWNVRYDEWVKAD 59 (76)
T ss_dssp TEEEEEEEEE-EEEE-EETTEEEEEEEETTSCCSSCEEEEGG
T ss_pred CCCCEEEEEE-EEEE-ccCCceEEEEEeCCcCCCceEecChh
Confidence 4578998776 4433 24566789999999999999999976
No 95
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=93.06 E-value=0.031 Score=45.87 Aligned_cols=44 Identities=25% Similarity=0.521 Sum_probs=33.8
Q ss_pred CCceeehhhhhhcccc-cCCCCeEEEEecCCCCCccceecccccccc
Q 024859 152 DGAWYDVSAFLAQRNF-DTADPEVQVRFAGFGAEEDEWVNIKRHVRQ 197 (261)
Q Consensus 152 D~AWydv~~fl~~R~l-~~ge~ev~Vrf~gFg~eedewvnv~~~vR~ 197 (261)
||-||...+. .-|.- ..|..+++|||.||...-||||..- +|+.
T Consensus 25 d~~~y~AkIl-~i~~~~~~~~~~YyVHY~gwNkR~DEWV~~~-ri~~ 69 (133)
T 1wgs_A 25 DSTWHSAEVI-QSRVNDQEGREEFYVHYVGFNRRLDEWVDKN-RLAL 69 (133)
T ss_dssp TTEEEEEEEE-EEEEETTTTEEEEEEECTTTCSSCCEEECTT-TSCC
T ss_pred CCCEEEEEEE-EEEeccCCCceEEEEeccCcCCCceeecChh-hccc
Confidence 8999998764 33322 3577899999999999999999986 4443
No 96
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=92.72 E-value=0.048 Score=41.97 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=28.5
Q ss_pred EEeeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCcc
Q 024859 145 FEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEED 186 (261)
Q Consensus 145 fEa~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eed 186 (261)
--|+-+.||.||...+---. .....+.|.|.+||+.|.
T Consensus 17 C~A~ys~Dg~wYrA~I~~i~----~~~~~~~V~fiDYGN~E~ 54 (88)
T 1g5v_A 17 CSAIWSEDGCIYPATIASID----FKRETCVVVYTGYGNREE 54 (88)
T ss_dssp EEEECTTTCCEEEEEEEEEE----TTTTEEEEEETTTCCEEE
T ss_pred EEEEECCCCCEEEEEEEEec----CCCCEEEEEEecCCCEEE
Confidence 45777889999998743321 123789999999999975
No 97
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=92.31 E-value=0.06 Score=38.50 Aligned_cols=45 Identities=20% Similarity=0.347 Sum_probs=31.0
Q ss_pred EEeeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCccceeccccccc
Q 024859 145 FEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVR 196 (261)
Q Consensus 145 fEa~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~~~vR 196 (261)
--|+-+.||.||...+.--+ .....+.|.|.+||+.| .|++. .+|
T Consensus 15 c~A~~s~Dg~wYrA~I~~v~----~~~~~~~V~fvdYGn~e--~V~~~-~Lr 59 (64)
T 4a4f_A 15 CMAVWSEDGQCYEAEIEEID----EENGTAAITFAGYGNAE--VTPLL-NLK 59 (64)
T ss_dssp EEEECTTTSSEEEEEEEEEE----TTTTEEEEEETTTTEEE--EEEGG-GEE
T ss_pred EEEEECCCCCEEEEEEEEEc----CCCCEEEEEEEecCCEE--EEeHH-HcE
Confidence 44777889999998753211 12268999999999975 45554 344
No 98
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=91.92 E-value=0.07 Score=39.65 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=27.7
Q ss_pred EeeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCcc
Q 024859 146 EAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEED 186 (261)
Q Consensus 146 Ea~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eed 186 (261)
-|+-+.||.||...+.--. ..+..+.|.|.+||+.|.
T Consensus 17 ~A~~s~Dg~wYRA~I~~i~----~~~~~~~V~fiDYGN~e~ 53 (78)
T 2d9t_A 17 FALYWEDNKFYRAEVEALH----SSGMTAVVKFTDYGNYEE 53 (78)
T ss_dssp EEECTTTCCEEEEEEEEEC----SSSSEEEEEETTTTEEEE
T ss_pred EEEECCCCCEEEEEEEEEe----CCCCEEEEEEEcCCCeEE
Confidence 3666789999998755211 224789999999999864
No 99
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=91.72 E-value=0.067 Score=44.23 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=37.3
Q ss_pred eeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCccceecccccc--ccccccCccccccc
Q 024859 147 AKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHV--RQRSLPCEASECVA 209 (261)
Q Consensus 147 a~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~~~v--R~rS~ple~~eC~~ 209 (261)
|+-+.||.||-+.+.- +. ++..+.|.|..||+.+. +-++| .+ ...++|.++.+|.-
T Consensus 56 A~~~~d~~wyRa~I~~---~~--~~~~~~V~fvDyGn~~~-v~~lr-~l~~~f~~lP~qA~~c~L 113 (169)
T 3ntk_A 56 AQFPEDEVFYRAQIRK---VL--DDGKCEVHFIDFGNNAV-TQQFR-QLPEELAKPARYSRHCEL 113 (169)
T ss_dssp EEETTTTEEEEEEEEE---EC--STTCEEEEETTTTEEEE-ESCEE-CCCHHHHSSCCSSEEEEE
T ss_pred EEECCCCcEEEEEEEE---EC--CCCEEEEEEEecCCeEE-hhhhh-ccCHHHhhCCceeEEEEE
Confidence 4446799999987542 22 22479999999999986 33333 11 22467888888864
No 100
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=91.10 E-value=0.072 Score=39.65 Aligned_cols=39 Identities=23% Similarity=0.416 Sum_probs=34.8
Q ss_pred ceeehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 154 AWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 154 AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
--|.|...|.+|+...|..+++|+..||+.+++.|-...
T Consensus 20 e~yeVE~Il~~r~~~~g~~~YlVkWkGy~~~~~TWEp~~ 58 (75)
T 2rsn_A 20 DVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQ 58 (75)
T ss_dssp GCEEEEEEEEEEECSSSCEEEEEEEESSCGGGCEEEEGG
T ss_pred ceEEEEEEEEEEEcCCCcEEEEEEECCCCCcCCeeecHH
Confidence 457788999999988899999999999999999998765
No 101
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=90.41 E-value=0.38 Score=35.57 Aligned_cols=41 Identities=10% Similarity=0.233 Sum_probs=33.5
Q ss_pred cccCCceEEEEeecCccceeeeeEEEeeeeccCCCCcceeEEEEEEccCCCc
Q 024859 209 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSE 260 (261)
Q Consensus 209 ~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r~~Hd~~~C~C~F~Vr~~hd~sE 260 (261)
..+.||.|+|-= .+-+||.|.|.+|... +.+.|.|+.+++|
T Consensus 6 ~~~vGd~vmArW---~D~~yYpA~I~si~~~--------~~Y~V~F~dG~~e 46 (67)
T 3p8d_A 6 EFQINEQVLACW---SDCRFYPAKVTAVNKD--------GTYTVKFYDGVVQ 46 (67)
T ss_dssp CCCTTCEEEEEC---TTSCEEEEEEEEECTT--------SEEEEEETTSCEE
T ss_pred ccccCCEEEEEc---CCCCEeeEEEEEECCC--------CeEEEEEeCCceE
Confidence 567999999775 3589999999999765 5699999987665
No 102
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=90.32 E-value=0.23 Score=41.85 Aligned_cols=55 Identities=25% Similarity=0.392 Sum_probs=38.5
Q ss_pred eeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCccceecccccc-----ccccccCccccccc
Q 024859 147 AKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHV-----RQRSLPCEASECVA 209 (261)
Q Consensus 147 a~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~~~v-----R~rS~ple~~eC~~ 209 (261)
|+.+.||.||-+.+.- + .++..+.|.|..||+.+ +|... .+ ...++|.++.+|.-
T Consensus 74 a~~~~d~~wyRa~V~~---~--~~~~~~~V~~vDyG~~~--~v~~~-~l~~l~~~f~~lP~qA~~c~L 133 (201)
T 4b9w_A 74 AFFSGDGNWYRALVKE---I--LPSGNVKVHFVDYGNVE--EVTTD-QLQAILPQFLLLPFQGMQCWL 133 (201)
T ss_dssp EEETTTTEEEEEEEEE---E--CTTSCEEEEETTTCCEE--EECGG-GEEECCGGGGSSCBCCEEEEE
T ss_pred EEECCCCeEEEEEEEE---E--CCCCeEEEEEEccCCEE--EEEHH-HhccChHhHcccchhhEEEEE
Confidence 6667899999876421 1 23467999999999976 44433 22 23578999999975
No 103
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.27 E-value=0.24 Score=37.19 Aligned_cols=41 Identities=22% Similarity=0.395 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcc
Q 024859 18 EVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNR 70 (261)
Q Consensus 18 Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNR 70 (261)
-..-|+..|..+ +.|..+..++|+.+-.+|. .||+.||--|
T Consensus 17 ~~e~L~~Yy~~h--k~L~EeDl~~L~~kskms~----------qqvkdwFa~k 57 (70)
T 2ys9_A 17 DIQPLERYWAAH--QQLRETDIPQLSQASRLST----------QQVLDWFDSR 57 (70)
T ss_dssp CCHHHHHHHHHT--CCCCTTHHHHHHHHTTCCH----------HHHHHHHHHH
T ss_pred cchHHHHHHHHh--cccchhhHHHHHHHhCCCH----------HHHHHHHHhc
Confidence 346799999997 8999999999999999775 8999999765
No 104
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=90.18 E-value=0.088 Score=41.75 Aligned_cols=39 Identities=15% Similarity=0.315 Sum_probs=30.7
Q ss_pred CCceeehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 152 DGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 152 D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
+|-||+..+.- -+. ..|+.+++|+|.||...-||||..-
T Consensus 34 ~~~~YeAkIl~-v~~-~~~~~~Y~VHY~GwNkR~DEWV~~~ 72 (102)
T 2f5k_A 34 GPLLYEAKCVK-VAI-KDKQVKYFIHYSGWNKNWDEWVPES 72 (102)
T ss_dssp SSSEEEEEEEE-EEE-ETTEEEEEEEETTSCGGGCEEEEGG
T ss_pred CCEEEEEEEEE-EEE-cCCCcEEEEEeCCcCCCceeeccHh
Confidence 78999887543 222 4567899999999999999999943
No 105
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=89.82 E-value=0.44 Score=36.85 Aligned_cols=43 Identities=9% Similarity=0.212 Sum_probs=34.3
Q ss_pred cccccCCceEEEEeecCccceeeeeEEEeeeeccCCCCcceeEEEEEEccCCCc
Q 024859 207 CVAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSE 260 (261)
Q Consensus 207 C~~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r~~Hd~~~C~C~F~Vr~~hd~sE 260 (261)
-.....||.|+|-= . +-+||.|.|.+|..- +.++|.|+.+.+|
T Consensus 19 ~~~f~vGd~VlArW--~-D~~yYPAkI~sV~~~--------~~YtV~F~DG~~e 61 (85)
T 3qii_A 19 SSEFQINEQVLACW--S-DCRFYPAKVTAVNKD--------GTYTVKFYDGVVQ 61 (85)
T ss_dssp --CCCTTCEEEEEC--T-TSCEEEEEEEEECTT--------SEEEEEETTSCEE
T ss_pred CcccccCCEEEEEe--C-CCCEeeEEEEEECCC--------CeEEEEEeCCCeE
Confidence 35678999999776 3 489999999999865 4799999987665
No 106
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=89.67 E-value=0.25 Score=42.47 Aligned_cols=55 Identities=25% Similarity=0.392 Sum_probs=38.4
Q ss_pred eeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCccceecccccc-----ccccccCccccccc
Q 024859 147 AKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHV-----RQRSLPCEASECVA 209 (261)
Q Consensus 147 a~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~~~v-----R~rS~ple~~eC~~ 209 (261)
|+.+.||.||-+.+.- + .++..+.|.|..||+.+ +|... .+ ...++|.++.+|..
T Consensus 74 a~~~~d~~WyRa~V~~---~--~~~~~~~V~~vDyGn~~--~v~~~-~l~~l~~~f~~lP~qA~~c~L 133 (226)
T 4b9x_A 74 AFFSGDGNWYRALVKE---I--LPSGNVKVHFVDYGNVE--EVTTD-QLQAILPQFLLLPFQGMQCWL 133 (226)
T ss_dssp EEETTTTEEEEEEEEE---E--CSSSEEEEECTTTCCEE--EEEGG-GEECCCGGGSSSCBCCEEEEE
T ss_pred EEECCCCeEEEEEEEE---E--CCCCeEEEEEEecCCEE--EEEHH-HhccChHHHcccccceEEEEE
Confidence 5667899999876421 1 24468999999999976 34432 22 23578999999975
No 107
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=89.52 E-value=0.83 Score=34.06 Aligned_cols=43 Identities=14% Similarity=0.185 Sum_probs=32.9
Q ss_pred cccCCceEEEEeecCccceeeeeEEEeeeeccCCCCcceeEEEEEEcc
Q 024859 209 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDH 256 (261)
Q Consensus 209 ~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r~~Hd~~~C~C~F~Vr~~h 256 (261)
.+..|+.|+|+...+....+|+|.|++|... ...-.|.|-|.-
T Consensus 5 ~~~vGekV~~~~~d~k~~~~y~AkIl~i~~~-----~~~~~Y~VHY~g 47 (76)
T 2lcc_A 5 PCLTGTKVKVKYGRGKTQKIYEASIKSTEID-----DGEVLYLVHYYG 47 (76)
T ss_dssp CSSTTCEEEEEEEETTEEEEEEEEEEEEEEE-----TTEEEEEEEETT
T ss_pred ccCCCCEEEEEeCCCCCCCEEEEEEEEEEcc-----CCceEEEEEeCC
Confidence 5679999999987544568999999998753 234568888863
No 108
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=88.60 E-value=0.4 Score=34.68 Aligned_cols=47 Identities=21% Similarity=0.423 Sum_probs=33.0
Q ss_pred CcceEEeeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 141 TFMEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 141 ~~~efEa~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
-.|.+||.... +-||... ... +...+..|+|+|.|+...-|+|+++.
T Consensus 15 vGmkLEa~d~~-~p~~~At-V~~---v~~~~~~~~VhfdGw~~~~D~W~~~d 61 (69)
T 3sd4_A 15 VGAQLEARDRL-KNWYPAH-IED---IDYEEGKVLIHFKRWNHRYDEWFCWD 61 (69)
T ss_dssp TTCEEEEECTT-SCEEEEE-EEE---EETTTTEEEEEETTSCGGGCEEEETT
T ss_pred CCCEEEEEECC-CCccccE-EEE---EeccCCEEEEEeCCCCCCCCEEEcCC
Confidence 35779997654 4577433 221 11244889999999999999999976
No 109
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=88.55 E-value=1.1 Score=35.39 Aligned_cols=47 Identities=15% Similarity=0.444 Sum_probs=30.5
Q ss_pred cccCCceEEEEeec-CccceeeeeEEEeeeeccCCCCcceeEEEEEEc
Q 024859 209 AVLPGDLILCFQEG-KDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYD 255 (261)
Q Consensus 209 ~v~~Gd~vlcf~e~-~~~a~y~DA~V~~i~r~~Hd~~~C~C~F~Vr~~ 255 (261)
....|+.||||... ....+.|+|.|++|.-..=....-.=.++|-|.
T Consensus 19 ~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~ 66 (101)
T 3m9q_A 19 LFHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQ 66 (101)
T ss_dssp CCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEECTTSCEEEEEEEEET
T ss_pred cccCCCEEEEEecCCCCCCcceEeEEEEEEecCCccccCceEEEEEeC
Confidence 35689999999962 224578999999998643211112234667664
No 110
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=88.37 E-value=1.1 Score=35.96 Aligned_cols=46 Identities=20% Similarity=0.536 Sum_probs=31.5
Q ss_pred cccCCceEEEEeec-CccceeeeeEEEeeeeccCC-CCcceeEEEEEEc
Q 024859 209 AVLPGDLILCFQEG-KDQALYFDAHVLDAQRRRHD-VRGCRCRFLVRYD 255 (261)
Q Consensus 209 ~v~~Gd~vlcf~e~-~~~a~y~DA~V~~i~r~~Hd-~~~C~C~F~Vr~~ 255 (261)
.+..|+.||||..+ ....++|+|.|++|....-+ .++. -.++|.|.
T Consensus 19 ~F~~GEkVLc~hgd~~k~~~lYeAKIl~v~~~~~~~g~~~-~~Y~VHY~ 66 (110)
T 3m9p_A 19 KFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKI-PEYLIHFN 66 (110)
T ss_dssp CSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEE-EEEEEEET
T ss_pred cccCCCEEEEEcCCCCCCCCceeeEEEEEEeccCcccccc-eEEEEEEC
Confidence 46799999999753 34468999999999865422 1222 35667764
No 111
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.15 E-value=0.71 Score=34.36 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=33.1
Q ss_pred cccccccCCceEEEEeecCccceeeeeEEEeeeeccCCCCcceeEEEEEEccCCCc
Q 024859 205 SECVAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSE 260 (261)
Q Consensus 205 ~eC~~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r~~Hd~~~C~C~F~Vr~~hd~sE 260 (261)
+.....++||.+++-.. +.+||.|.|.+|... .. +.|.|+..+.|
T Consensus 5 ~~~~~~kvGd~clA~ws---Dg~~Y~A~I~~v~~~----~~----~~V~f~Dyn~e 49 (74)
T 2equ_A 5 SSGFDFKAGEEVLARWT---DCRYYPAKIEAINKE----GT----FTVQFYDGVIR 49 (74)
T ss_dssp CSCCCCCTTCEEEEECS---SSSEEEEEEEEESTT----SS----EEEEETTSCEE
T ss_pred cCCCCCCCCCEEEEECC---CCCEEEEEEEEECCC----CE----EEEEEecCCeE
Confidence 34567899999998875 478999999999632 23 47788666554
No 112
>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=87.79 E-value=0.33 Score=38.69 Aligned_cols=47 Identities=23% Similarity=0.444 Sum_probs=39.2
Q ss_pred CcceEEeeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 141 TFMEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 141 ~~~efEa~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
-.|.+||...++-..+-|++...- .+..|+|+|.|+.+..|.|+++.
T Consensus 16 ~GMKLEAvD~~~p~~icvATV~~v-----~g~rl~v~fDGw~~~~D~W~~~d 62 (107)
T 1wjq_A 16 KKMKLEVVDKRNPMFIRVATVADT-----DDHRVKVHFDGWNNCYDYWIDAD 62 (107)
T ss_dssp SSCEEEEECTTCTTCEEEEEEEEE-----CSSCEEEECSSSCGGGCEEECTT
T ss_pred CCCEEEEEcCCCCCcEEeEEEEEe-----cCCEEEEEeCCCCCcCCEEEECC
Confidence 457899999999888878765543 45899999999999999999974
No 113
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=87.58 E-value=0.1 Score=39.87 Aligned_cols=39 Identities=26% Similarity=0.488 Sum_probs=29.6
Q ss_pred CCceeehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 152 DGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 152 D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
++-||+..+ |.-|. ..|+.+++|||.||...-||||..-
T Consensus 24 ~~~~y~AkI-l~i~~-~~~~~~YyVHY~GwNkR~DEWV~~~ 62 (85)
T 2lrq_A 24 GPLIYEAKV-LKTKP-DATPVEYYIHYAGWSKNWDEWVPEN 62 (85)
Confidence 567887665 33333 3467899999999999999999843
No 114
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=87.22 E-value=0.98 Score=35.71 Aligned_cols=39 Identities=18% Similarity=0.576 Sum_probs=30.5
Q ss_pred cccCCceEEEEeecCccceeeeeEEEeeeeccCCCCcceeEEEEEEcc
Q 024859 209 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDH 256 (261)
Q Consensus 209 ~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r~~Hd~~~C~C~F~Vr~~h 256 (261)
.+..|+.|+|+. ...+|+|.|++|... ...-.|.|-|.-
T Consensus 22 ~f~vGekVl~~~----~~~~YeAkIl~v~~~-----~~~~~Y~VHY~G 60 (102)
T 2f5k_A 22 KFQEGERVLCFH----GPLLYEAKCVKVAIK-----DKQVKYFIHYSG 60 (102)
T ss_dssp SCCTTCEEEEES----SSSEEEEEEEEEEEE-----TTEEEEEEEETT
T ss_pred ccCCCCEEEEEE----CCEEEEEEEEEEEEc-----CCCcEEEEEeCC
Confidence 477999999998 257999999999853 234568888864
No 115
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=87.11 E-value=0.83 Score=31.80 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=28.5
Q ss_pred cccCCceEEEEeecCccceeeeeEEEeeeeccCCCCcceeEEEEEEcc-CCCc
Q 024859 209 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDH-DQSE 260 (261)
Q Consensus 209 ~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r~~Hd~~~C~C~F~Vr~~h-d~sE 260 (261)
..++||++++-.. ++..||.|.|++|... .. .+.|.|.. +|+|
T Consensus 3 ~~~~G~~c~A~~s--~Dg~wYrA~I~~i~~~---~~----~~~V~f~DYGn~e 46 (59)
T 1mhn_A 3 QWKVGDKCSAIWS--EDGCIYPATIASIDFK---RE----TCVVVYTGYGNRE 46 (59)
T ss_dssp CCCTTCEEEEECT--TTSCEEEEEEEEEETT---TT----EEEEEETTTTEEE
T ss_pred cCCcCCEEEEEEC--CCCCEEEEEEEEEcCC---CC----EEEEEEEcCCCEE
Confidence 4789998776552 2357999999999542 12 45677654 5554
No 116
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=86.90 E-value=0.43 Score=40.93 Aligned_cols=56 Identities=25% Similarity=0.409 Sum_probs=32.6
Q ss_pred eeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCccc-eeccc---cccccccccCcccccc
Q 024859 147 AKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDE-WVNIK---RHVRQRSLPCEASECV 208 (261)
Q Consensus 147 a~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eede-wvnv~---~~vR~rS~ple~~eC~ 208 (261)
|+-+ ||.||-+.+.-- . . +..+.|.|..||+.+.- +-+++ ..+....+|.++.+|.
T Consensus 74 a~~~-d~~wyRa~V~~~---~-~-~~~~~V~~vDyGn~~~v~~~~lr~l~~~~~~~~lp~~a~~~~ 133 (246)
T 2hqx_A 74 AKFV-DGEWYRARVEKV---E-S-PAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYA 133 (246)
T ss_dssp EECT-TSCEEEEEEEEE---E-E-TTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCC----
T ss_pred EEcC-CCCEEEEEEEEE---c-C-CCeEEEEEEeCCCeEEEeHHHhhcCCHhHcCCCCchhhhhhh
Confidence 4445 999998864421 1 1 36899999999997621 22222 2232236799999985
No 117
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=86.71 E-value=0.13 Score=39.40 Aligned_cols=43 Identities=9% Similarity=0.209 Sum_probs=32.3
Q ss_pred ccccCCceEEEEeecCccceeeeeEEEeeeeccCCCCcceeEEEEEEccCCCcC
Q 024859 208 VAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEV 261 (261)
Q Consensus 208 ~~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r~~Hd~~~C~C~F~Vr~~hd~sE~ 261 (261)
...++||.+++-.. +..||.|.|.+|... . .+.|.|+.++.|+
T Consensus 5 ~~~kvGd~clAkws---Dg~wY~A~I~~v~~~----~----~y~V~F~DGn~E~ 47 (81)
T 2ldm_A 5 SEFQINEQVLASWS---DSRFYPAKVTAVNKD----G----TYTVKFYDGVVQT 47 (81)
Confidence 45789999998554 468999999999641 1 5688887777763
No 118
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=85.46 E-value=1.4 Score=32.93 Aligned_cols=60 Identities=8% Similarity=0.104 Sum_probs=41.0
Q ss_pred CCCCCC---CCCCccccCHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhh
Q 024859 1 MGRPPS---NGGPAFRFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (261)
Q Consensus 1 mgrPp~---~~~pRt~FT~~Ql~eLEk~F~~~---~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQ 68 (261)
||...+ .......+|+.|+.+|.++|... ++.+++..+...+-..++.. ++..+++..|+
T Consensus 1 M~~~~~~~~~~~~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~--------~~~~~~~~l~~ 66 (161)
T 3fwb_A 1 MSKNRSSLQSGPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFE--------LPKREILDLID 66 (161)
T ss_dssp --------CTTTTTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCC--------CCHHHHHHHHH
T ss_pred CCCCccccccCCCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCC--------CCHHHHHHHHH
Confidence 555554 24567789999999999999853 46789998888888888754 45566665554
No 119
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=85.10 E-value=1.7 Score=32.53 Aligned_cols=54 Identities=11% Similarity=0.044 Sum_probs=44.8
Q ss_pred CCCccccCHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhc
Q 024859 8 GGPAFRFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQN 69 (261)
Q Consensus 8 ~~pRt~FT~~Ql~eLEk~F~~~---~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQN 69 (261)
......+|.+|+.+|.++|... ++.+++..+...+-..+|.. ++..+|+.+|+.
T Consensus 24 ~~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~--------~~~~ei~~l~~~ 80 (100)
T 2lv7_A 24 EQRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYM--------PNEVELEVIIQR 80 (100)
T ss_dssp TCSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCC--------CCTTTHHHHHHH
T ss_pred hcccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCC--------CCHHHHHHHHHH
Confidence 3445679999999999999864 67899999999999999865 688999988863
No 120
>1wjr_A KIAA1617 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=84.93 E-value=0.51 Score=38.35 Aligned_cols=47 Identities=13% Similarity=0.281 Sum_probs=39.1
Q ss_pred CcceEEeeccCCCceeehhhhhhcccccCCCCeEEEEecCCCC--Cccceeccc
Q 024859 141 TFMEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGA--EEDEWVNIK 192 (261)
Q Consensus 141 ~~~efEa~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~--eedewvnv~ 192 (261)
-.|-+||...++-..|=|++...- .| .-|+|||.|+++ ..|-|+++.
T Consensus 14 ~GmKLEa~D~~~p~~~~vAtV~~v----~g-~rl~l~~dG~~~~~~~D~W~~~~ 62 (127)
T 1wjr_A 14 VGSLIELQDSQNPFQYWIVSVIEN----VG-GRLRLRYVGLEDTESYDQWLFYL 62 (127)
T ss_dssp TTCEEEEECSSCSSCEEEEECCCE----ET-TEEEECBTTCSSCCSSCEEEETT
T ss_pred CCCEeEEecCCCCCcEEEEEEeee----eC-CEEEEEecCCCCCCCCCEeEeCC
Confidence 357899999999999999977755 24 899999999999 459999975
No 121
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=83.89 E-value=0.35 Score=37.17 Aligned_cols=37 Identities=19% Similarity=0.421 Sum_probs=31.1
Q ss_pred eehhhhhhcccc-cCCCCeEEEEecCCCC-Cccceeccc
Q 024859 156 YDVSAFLAQRNF-DTADPEVQVRFAGFGA-EEDEWVNIK 192 (261)
Q Consensus 156 ydv~~fl~~R~l-~~ge~ev~Vrf~gFg~-eedewvnv~ 192 (261)
|.|...|.||+. ..|..+++|+..||+. +++-|-...
T Consensus 31 y~VE~Il~~r~~~~~g~~~YlVkWkGy~~~~~~TWEP~~ 69 (92)
T 2rso_A 31 YVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEA 69 (92)
T ss_dssp CCEEEEEEEEECTTSSCEEEEEEETTCCCCTTSEEECGG
T ss_pred EEEEEEEEEEeecCCCEEEEEEEEccCCCcccCccccHH
Confidence 678899999986 4688999999999995 777897655
No 122
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=82.81 E-value=1.4 Score=33.72 Aligned_cols=28 Identities=11% Similarity=0.076 Sum_probs=21.9
Q ss_pred cccCCceEEEEeecCccceeeeeEEEeeee
Q 024859 209 AVLPGDLILCFQEGKDQALYFDAHVLDAQR 238 (261)
Q Consensus 209 ~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r 238 (261)
..++||++|+.. . ++..||.|+|++|..
T Consensus 10 ~~kvGd~C~A~y-s-~Dg~wYrA~I~~i~~ 37 (88)
T 1g5v_A 10 QWKVGDKCSAIW-S-EDGCIYPATIASIDF 37 (88)
T ss_dssp CCCSSCEEEEEC-T-TTCCEEEEEEEEEET
T ss_pred CCCCCCEEEEEE-C-CCCCEEEEEEEEecC
Confidence 578999887765 2 346899999999954
No 123
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=82.23 E-value=2.4 Score=34.55 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=31.1
Q ss_pred cccCCceEEEEeecCccceeeeeEEEeeeeccCCCCcceeEEEEEEcc
Q 024859 209 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDH 256 (261)
Q Consensus 209 ~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r~~Hd~~~C~C~F~Vr~~h 256 (261)
.+..|+.|+|+.. +-.+|.|.|++|.... .. ..-.|.|-|.-
T Consensus 12 ~~~vGe~v~~~~~---d~~~y~AkIl~i~~~~--~~-~~~~YyVHY~g 53 (133)
T 1wgs_A 12 TVEIGETYLCRRP---DSTWHSAEVIQSRVND--QE-GREEFYVHYVG 53 (133)
T ss_dssp CCCTTSEEEEEET---TTEEEEEEEEEEEEET--TT-TEEEEEEECTT
T ss_pred ccCCCCEEEEEeC---CCCEEEEEEEEEEecc--CC-CceEEEEeccC
Confidence 4679999999985 3589999999988643 11 23568888863
No 124
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=82.10 E-value=0.9 Score=37.70 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=34.8
Q ss_pred eeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCccceeccccccc-----cccccCcccccc
Q 024859 147 AKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVR-----QRSLPCEASECV 208 (261)
Q Consensus 147 a~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~~~vR-----~rS~ple~~eC~ 208 (261)
|+-+.||.||-+.+. +-.+..+.|.|..||+.+. +++. .+| ..++|.++.+|+
T Consensus 60 a~~~~d~~wyRa~V~------~v~~~~~~V~~vDyG~~~~--v~~~-~l~~l~~~~~~~p~~a~~~~ 117 (218)
T 2wac_A 60 AQFTLDNQWYRAKVE------RVQGSNATVLYIDYGNKET--LPTN-RLAALPPAFSSEKPYATEYA 117 (218)
T ss_dssp EECTTTCCEEEEEEE------EEETTEEEEEETTTCCEEE--EEGG-GEEECCGGGSSSCCSEEEEE
T ss_pred EEECCCCeEEEEEEE------EecCCeEEEEEEecCCeEE--EchH-HcccCChhhccCCcceeEEE
Confidence 444669999987743 2233789999999999764 3332 222 235677777775
No 125
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=81.34 E-value=0.71 Score=33.43 Aligned_cols=39 Identities=13% Similarity=0.354 Sum_probs=34.2
Q ss_pred ceeehhhhhhcccccCCCCe-EEEEecCCCCCccceeccc
Q 024859 154 AWYDVSAFLAQRNFDTADPE-VQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 154 AWydv~~fl~~R~l~~ge~e-v~Vrf~gFg~eedewvnv~ 192 (261)
.=|.|...|.+|+...|..+ ++|+..||+.+++.|....
T Consensus 7 ~ey~VE~Il~~r~~~~g~~~~YlVKWkGy~~~~~TWEp~e 46 (70)
T 1g6z_A 7 EEYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPE 46 (70)
T ss_dssp CSSCCCSCSEEECCTTSSCCEEEECCTTTTSSCCEEECGG
T ss_pred ceEEEEEEEEEEEcCCCcEEEEEEEECCCCCCCCceecHH
Confidence 34689999999988778888 9999999999999999765
No 126
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=81.26 E-value=0.78 Score=28.84 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=28.4
Q ss_pred cCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchh
Q 024859 14 FNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRY 72 (261)
Q Consensus 14 FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~ 72 (261)
++++++..+-.++.+ + . ...+||+.||+|. .-|..|++.-..
T Consensus 6 ~~~~~~~~i~~l~~~--g--~---s~~~ia~~lgvs~----------~Tv~r~l~~~~~ 47 (52)
T 1jko_C 6 INKHEQEQISRLLEK--G--H---PRQQLAIIFGIGV----------STLYRYFPASSI 47 (52)
T ss_dssp SCTTHHHHHHHHHHT--T--C---CHHHHHHTTSCCH----------HHHHHHSCTTC-
T ss_pred CCHHHHHHHHHHHHc--C--C---CHHHHHHHHCCCH----------HHHHHHHHHccc
Confidence 566666666666654 2 2 3578999999874 779999876443
No 127
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=80.99 E-value=1.5 Score=32.43 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=22.8
Q ss_pred cCccccc----ccccCCceEEEEeecCccceeeeeEEEeeee
Q 024859 201 PCEASEC----VAVLPGDLILCFQEGKDQALYFDAHVLDAQR 238 (261)
Q Consensus 201 ple~~eC----~~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r 238 (261)
+||++.+ ...++||++++.. .. +..||-|+|++|..
T Consensus 5 ~l~~~~~~e~~~~~kvGd~C~A~y-s~-Dg~wYRA~I~~i~~ 44 (77)
T 3pnw_C 5 ILESSIPMEYAKMWKPGDECFALY-WE-DNKFYRAEVEALHS 44 (77)
T ss_dssp ------CHHHHTTCCTTCEEEEEE-TT-TTEEEEEEEEEECT
T ss_pred ccccccchhhcCCCCcCCEEEEEE-CC-CCCEEEEEEEEEeC
Confidence 5666666 3589999887665 22 46899999999964
No 128
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=80.79 E-value=3.3 Score=32.47 Aligned_cols=52 Identities=8% Similarity=0.171 Sum_probs=41.8
Q ss_pred CccccCHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhc
Q 024859 10 PAFRFNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQN 69 (261)
Q Consensus 10 pRt~FT~~Ql~eLEk~F~~---~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQN 69 (261)
.+..+|++||++|.++|.. .++.+++..+...+-.+++..+ +..+++..+.+
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~--------~~~~~~~~~~~ 60 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVP--------PDDELNAMLKE 60 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCC--------CHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCc--------cHHHHHHHHHh
Confidence 4568999999999999986 3578999999999999999764 66777765543
No 129
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=80.72 E-value=0.39 Score=35.60 Aligned_cols=39 Identities=26% Similarity=0.574 Sum_probs=34.2
Q ss_pred ceeehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 154 AWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 154 AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
.-|.|...|.+|+...|..+++|+..||..++..|....
T Consensus 12 ~~y~VE~Il~~r~~~~g~~~YlVKWkGy~~~~~TWEp~~ 50 (78)
T 2dnt_A 12 ELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQ 50 (78)
T ss_dssp CSCCCCCEEEEEECTTSCEEEEECBTTBCGGGCEEEETT
T ss_pred ceEEEEEEEEEEEcCCCcEEEEEEECCCCccCCceecHH
Confidence 356788899999888889999999999999999998765
No 130
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=80.48 E-value=1.4 Score=36.60 Aligned_cols=26 Identities=27% Similarity=0.542 Sum_probs=22.4
Q ss_pred cccCCceEEEEeecCccceeeeeEEEeeee
Q 024859 209 AVLPGDLILCFQEGKDQALYFDAHVLDAQR 238 (261)
Q Consensus 209 ~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r 238 (261)
.+.+|+.||||+ + .++|+|.|++|..
T Consensus 9 ~f~~gekvl~~h-g---~llYeAKVl~v~~ 34 (136)
T 2k3y_A 9 EFALGGRVLAFH-G---PLMYEAKILKIWD 34 (136)
T ss_dssp SCCTTSEEEEEC-S---SCEEEEEEEEEEE
T ss_pred ccCCCCEEEEEE-C---CeeEEEEEEEEEe
Confidence 467999999999 2 5699999999986
No 131
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Probab=79.37 E-value=0.65 Score=32.60 Aligned_cols=36 Identities=28% Similarity=0.522 Sum_probs=31.4
Q ss_pred eehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 156 YDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 156 ydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
|.|...|.+|+. .|..+++|+..||+.+++.|-...
T Consensus 4 y~VE~Il~~r~~-~g~~~YlVkWkGy~~~~~TWEp~~ 39 (59)
T 3fdt_A 4 YVVEKVLDRRVV-KGQVEYLLKWKGFSEEHNTWEPEK 39 (59)
T ss_dssp EEEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEGG
T ss_pred EEEEEEEEEEEe-CCeEEEEEEEeCCCcccCCccchh
Confidence 678888999975 688999999999999999998765
No 132
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=78.93 E-value=2.2 Score=30.17 Aligned_cols=28 Identities=11% Similarity=0.236 Sum_probs=21.6
Q ss_pred cccCCceEEEEeecCccceeeeeEEEeeee
Q 024859 209 AVLPGDLILCFQEGKDQALYFDAHVLDAQR 238 (261)
Q Consensus 209 ~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r 238 (261)
..++||.+++... ++..||.|+|++|..
T Consensus 8 ~~~vGd~c~A~~s--~Dg~wYrA~I~~v~~ 35 (64)
T 4a4f_A 8 SWKVGDKCMAVWS--EDGQCYEAEIEEIDE 35 (64)
T ss_dssp CCCTTCEEEEECT--TTSSEEEEEEEEEET
T ss_pred CCCCCCEEEEEEC--CCCCEEEEEEEEEcC
Confidence 5689998886652 235799999999984
No 133
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*
Probab=78.73 E-value=0.6 Score=32.31 Aligned_cols=36 Identities=25% Similarity=0.518 Sum_probs=31.2
Q ss_pred eehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 156 YDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 156 ydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
|.|...|.+|+. .|..++.|+..||+.+++.|....
T Consensus 3 y~VE~Il~~r~~-~g~~~YlVkWkGy~~~~~TWEp~~ 38 (55)
T 3f2u_A 3 YVVEKVLDRRVV-KGKVEYLLKWKGFSDEDNTWEPEE 38 (55)
T ss_dssp CCEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEGG
T ss_pred EEEEEEEEEEEe-CCeEEEEEEEEeCCCccCCeeEHH
Confidence 667788889876 588999999999999999998766
No 134
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=78.64 E-value=0.72 Score=31.83 Aligned_cols=36 Identities=17% Similarity=0.354 Sum_probs=31.6
Q ss_pred eehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 156 YDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 156 ydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
|.|...|.+|+. .|..++.|+..||+.+++.|....
T Consensus 4 y~VE~Il~~r~~-~g~~~YlVKWkgy~~~~~TWEp~~ 39 (55)
T 1pfb_A 4 YAAEKIIQKRVK-KGVVEYRVKWKGWNQRYNTWEPEV 39 (55)
T ss_dssp EEEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEGG
T ss_pred EEEEEEEEEEEe-CCeEEEEEEEcCCCCccCcEeEHH
Confidence 678888999975 677999999999999999999765
No 135
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=78.08 E-value=0.76 Score=31.58 Aligned_cols=36 Identities=19% Similarity=0.377 Sum_probs=31.2
Q ss_pred eehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 156 YDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 156 ydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
|.|...|.+|+. .|..++.|+..||+.+++-|....
T Consensus 4 y~VE~Il~~r~~-~g~~~YlVkWkGy~~~~~TWEp~~ 39 (54)
T 3i91_A 4 FAAEALLKRRIR-KGRMEYLVKWKGWSQKYSTWEPEE 39 (54)
T ss_dssp EEEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEGG
T ss_pred EEEEEEEEEEEe-CCcEEEEEEEeCCCcccCcccchh
Confidence 678888889875 688999999999999999998765
No 136
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=78.01 E-value=0.77 Score=31.62 Aligned_cols=36 Identities=17% Similarity=0.428 Sum_probs=31.3
Q ss_pred eehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 156 YDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 156 ydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
|.|...|.+|+. .|..++.|+..||+.+++.|....
T Consensus 4 y~VE~Il~~r~~-~g~~~YlVkWkGy~~~~~TWEp~~ 39 (54)
T 3h91_A 4 FAAECILSKRLR-KGKLEYLVKWRGWSSKHNSWEPEE 39 (54)
T ss_dssp EEEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEGG
T ss_pred eEEEEEEEEEEe-CCcEEEEEEEeCCCCcCCCeecHh
Confidence 678888889875 688999999999999999998765
No 137
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=77.69 E-value=3.7 Score=28.23 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=40.4
Q ss_pred ccccCHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCCCccccCCcccccch---hhhhhh
Q 024859 11 AFRFNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSESPERKGKIMVQMKQ---VWNWFQ 68 (261)
Q Consensus 11 Rt~FT~~Ql~eLEk~F~~---~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~Q---Vk~WFQ 68 (261)
...+|++|+.+|.++|.. .++.+++..+...+-..+|.. ++..+ |..+|.
T Consensus 5 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~--------~~~~~~~~~~~~~~ 60 (86)
T 1j7q_A 5 ARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQT--------YTKRETEAIMKEAR 60 (86)
T ss_dssp CCCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCC--------CSHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCC--------CCHHHHHHHHHHHH
Confidence 456899999999999975 446899999999998888854 57778 887775
No 138
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=77.26 E-value=5.5 Score=30.73 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=31.1
Q ss_pred ccccCCceEEEEeecCccceeeeeEEEeeeeccCCCCcceeEEEEEEccC
Q 024859 208 VAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHD 257 (261)
Q Consensus 208 ~~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r~~Hd~~~C~C~F~Vr~~hd 257 (261)
..+..|+.|+|++ +..+|.|.|++|.... + .-.|.|-|..=
T Consensus 22 ~~~~vG~kv~v~~----~~~~y~AkIl~ir~~~----~-~~~YyVHY~g~ 62 (92)
T 2ro0_A 22 DDIIIKCQCWVQK----NDEERLAEILSINTRK----A-PPKFYVHYVNY 62 (92)
T ss_dssp TSCCTTCEEEEEE----TTEEEEEEEEEEECSS----S-SCEEEEEETTS
T ss_pred ccccCCCEEEEEE----CCEEEEEEEEEEEEcC----C-CcEEEEEeCCc
Confidence 4578999999996 3589999999998642 2 24688888643
No 139
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=76.99 E-value=3 Score=27.84 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=24.3
Q ss_pred CCCCCCCCCCc-----cccCHHHHHHHHHHHHhc
Q 024859 1 MGRPPSNGGPA-----FRFNPAEVTEMEGILQEH 29 (261)
Q Consensus 1 mgrPp~~~~pR-----t~FT~~Ql~eLEk~F~~~ 29 (261)
||||.+..++| +++|++|.+.|++..+..
T Consensus 4 ~~R~k~~~r~r~~~i~vRlt~eE~~~l~~~A~~~ 37 (51)
T 2ba3_A 4 AVRKKSEVRQKTVVRTLRFSPVEDETIRKKAEDS 37 (51)
T ss_dssp TTBCTTCCCCCSEEEEEEECHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCcCceeEEEEECHHHHHHHHHHHHHh
Confidence 79999765554 479999999999999986
No 140
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=76.90 E-value=1.5 Score=42.62 Aligned_cols=57 Identities=25% Similarity=0.415 Sum_probs=37.1
Q ss_pred eeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCccc-eeccc---cccccccccCccccccc
Q 024859 147 AKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDE-WVNIK---RHVRQRSLPCEASECVA 209 (261)
Q Consensus 147 a~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eede-wvnv~---~~vR~rS~ple~~eC~~ 209 (261)
|+.+ ||.||-+.+.--. . +..+.|.|..||+.+.- +-+++ ..+....+|.++.+|..
T Consensus 420 a~~~-d~~wyRa~I~~v~---~--~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~l~lP~qA~~c~L 480 (570)
T 3bdl_A 420 AKFV-DGEWYRARVEKVE---S--PAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAF 480 (570)
T ss_dssp EECT-TSCEEEEEEEEEE---E--TTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCCEEEEE
T ss_pred EEEC-CCCEEEEEEEEEc---C--CCeEEEEEEeCCCeEEEEHHHCccCCHHHhcCCCCcceEEEEE
Confidence 4445 9999988755321 1 47899999999998732 22222 33333344899988873
No 141
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=76.31 E-value=0.89 Score=33.35 Aligned_cols=40 Identities=18% Similarity=0.352 Sum_probs=33.1
Q ss_pred CCceeehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 152 DGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 152 D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
+...|.|...|.+|+. .|..+++|+..||+.+++.|....
T Consensus 13 ~~~ey~VEkIld~R~~-~g~~eYlVKWkGy~~~~~TWEp~e 52 (69)
T 1q3l_A 13 EEEEYAVEKIIDRRVR-KGMVEYYLKWKGYPETENTWEPEN 52 (69)
T ss_dssp ---CEEEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEGG
T ss_pred CCCcEEEEEEEEEEEE-CCeEEEEEEEcCCCcccCCccchH
Confidence 4567889999999975 677999999999999999999765
No 142
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=76.02 E-value=4.7 Score=29.53 Aligned_cols=48 Identities=8% Similarity=0.178 Sum_probs=37.4
Q ss_pred cCHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhc
Q 024859 14 FNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQN 69 (261)
Q Consensus 14 FT~~Ql~eLEk~F~~~---~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQN 69 (261)
||++|+.+|.++|... ++.+++..+...+-..++.. ++..+|+..|+.
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~--------~~~~~~~~~~~~ 51 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKN--------PTDEYLEGMMSE 51 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCC--------CCHHHHHTTTTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCC--------CCHHHHHHHHHh
Confidence 7999999999999753 46799999999888888865 355666655544
No 143
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=75.87 E-value=0.64 Score=32.95 Aligned_cols=36 Identities=19% Similarity=0.518 Sum_probs=31.1
Q ss_pred eehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 156 YDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 156 ydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
|.|...|.+|+ ..|..+++|+..||+.+++.|-...
T Consensus 5 y~VE~Il~~r~-~~g~~~YlVkWkGy~~~~~TWEp~~ 40 (62)
T 3lwe_A 5 FEVEKILDMKT-EGGKVLYKVRWKGYTSDDDTWEPEI 40 (62)
T ss_dssp CCEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEHH
T ss_pred EEEEEEEEEEE-cCCeEEEEEEEeCCCCcCCCeeeHh
Confidence 67888889986 4688999999999999999998765
No 144
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=75.38 E-value=4.7 Score=28.02 Aligned_cols=49 Identities=6% Similarity=0.028 Sum_probs=39.2
Q ss_pred cccCHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhh
Q 024859 12 FRFNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (261)
Q Consensus 12 t~FT~~Ql~eLEk~F~~---~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQ 68 (261)
..+|++++.+|.++|.. .++.+++..+...+-..++.. ++..+|..+|+
T Consensus 12 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~--------~~~~~~~~l~~ 63 (90)
T 1avs_A 12 AFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQN--------PTKEELDAIIE 63 (90)
T ss_dssp HHBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCC--------CCHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCC--------CCHHHHHHHHH
Confidence 35899999999999975 456789999988888888754 56777887764
No 145
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=74.22 E-value=8.1 Score=29.02 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=33.5
Q ss_pred CCCCCCCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhc
Q 024859 1 MGRPPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQN 69 (261)
Q Consensus 1 mgrPp~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQN 69 (261)
||||+ .+|.++...+-.++.. +. -..++|+.||+|. ..|..|++.
T Consensus 1 Mgr~~-------~~s~~~r~~i~~~~~~--G~-----s~~~ia~~lgis~----------~Tv~r~~~~ 45 (141)
T 1u78_A 1 MPRGS-------ALSDTERAQLDVMKLL--NV-----SLHEMSRKISRSR----------HCIRVYLKD 45 (141)
T ss_dssp -CCSC-------CCCHHHHHHHHHHHHT--TC-----CHHHHHHHHTCCH----------HHHHHHHHS
T ss_pred CCCcc-------cCCHHHHHHHHHHHHc--CC-----CHHHHHHHHCcCH----------HHHHHHHHc
Confidence 78763 5788888888887754 22 3578999999775 889999975
No 146
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=74.20 E-value=2.9 Score=29.67 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=37.7
Q ss_pred CccccCHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhh
Q 024859 10 PAFRFNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (261)
Q Consensus 10 pRt~FT~~Ql~eLEk~F~~---~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQ 68 (261)
....++.+++.+|..+|.. .++.+++..+...+-..++++ ..+|+.+|+
T Consensus 17 ~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~----------~~~~~~~~~ 68 (91)
T 2pmy_A 17 QGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVR----------PADAEAVFQ 68 (91)
T ss_dssp --CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCC----------HHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcC----------HHHHHHHHH
Confidence 3346899999999999975 346789999988888888754 477887775
No 147
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=74.03 E-value=6.2 Score=28.78 Aligned_cols=47 Identities=9% Similarity=0.106 Sum_probs=37.4
Q ss_pred cCHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhh
Q 024859 14 FNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (261)
Q Consensus 14 FT~~Ql~eLEk~F~~---~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQ 68 (261)
||+.|+.+|+++|.. .++.+++..+...+...++.. ++..++...|+
T Consensus 2 l~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~~~--------~~~~~~~~l~~ 51 (149)
T 2mys_C 2 FSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQN--------PTNAEINKILG 51 (149)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCC--------CCHHHHHHHHH
Confidence 789999999999964 346789999888888888865 46677777774
No 148
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=73.75 E-value=1.5 Score=30.91 Aligned_cols=40 Identities=25% Similarity=0.456 Sum_probs=32.2
Q ss_pred CCceeehhhhhhcccccCCCC-eEEEEecCCCCCccceeccc
Q 024859 152 DGAWYDVSAFLAQRNFDTADP-EVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 152 D~AWydv~~fl~~R~l~~ge~-ev~Vrf~gFg~eedewvnv~ 192 (261)
|..=|.|...|.+|+.. |.. +++|+..||+.+++.|-...
T Consensus 4 ~~~ey~VE~Il~~r~~~-g~~~~YlVkWkGy~~~~~TWEp~~ 44 (61)
T 3g7l_A 4 DADVYEVEDILADRVNK-NGINEYYIKWAGYDWYDNTWEPEQ 44 (61)
T ss_dssp -CCEEEEEEEEEEEECT-TSCEEEEEEETTSCGGGCEEEEGG
T ss_pred CCcEEEEEEEEEEEEEC-CCEEEEEEEEeCCCCcCCceeeHh
Confidence 34457888899999865 446 99999999999999998765
No 149
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=73.73 E-value=2.4 Score=33.93 Aligned_cols=50 Identities=12% Similarity=0.140 Sum_probs=40.1
Q ss_pred ccccCHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhh
Q 024859 11 AFRFNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (261)
Q Consensus 11 Rt~FT~~Ql~eLEk~F~~---~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQ 68 (261)
+..||++||++|.++|.. .++.+++..+...+-..+|.. +++.+|...|+
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~--------~~~~~~~~~~~ 54 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLS--------PSEAEVNDLMN 54 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCC--------CCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCC--------hhHHHHHHHHH
Confidence 467999999999999985 367899999999988999876 36666665554
No 150
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.70 E-value=4.4 Score=31.03 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=32.1
Q ss_pred cccCCceEEEEeec-CccceeeeeEEEeeeeccCCCCcceeEEEEEEccC
Q 024859 209 AVLPGDLILCFQEG-KDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHD 257 (261)
Q Consensus 209 ~v~~Gd~vlcf~e~-~~~a~y~DA~V~~i~r~~Hd~~~C~C~F~Vr~~hd 257 (261)
.+..|+.|+|++.. .....+|.|.|++|.... ..-.|.|-|..-
T Consensus 9 ~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~-----~~~~YyVHY~g~ 53 (87)
T 2eko_A 9 EIIEGCRLPVLRRNQDNEDEWPLAEILSVKDIS-----GRKLFYVHYIDF 53 (87)
T ss_dssp SCCTTCEEEBCEECTTCCEECCEEEEEEECCSS-----SCCCEEEEECSS
T ss_pred cccCCCEEEEEEcccCCCCeEEEEEEEEEEEcC-----CCcEEEEEeCCC
Confidence 57799999999962 335689999999987532 223577887643
No 151
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=73.62 E-value=6.3 Score=23.89 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=28.6
Q ss_pred ccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhc
Q 024859 13 RFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQN 69 (261)
Q Consensus 13 ~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQN 69 (261)
.+++.+..++-.++.+ .+ ...+||+.||+|. .-|..|.+.
T Consensus 5 ~l~~~~~~~i~~~~~~---g~----s~~~IA~~lgis~----------~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLL---NV----SLHEMSRKISRSR----------HCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHT---TC----CHHHHHHHHTCCH----------HHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHc---CC----CHHHHHHHHCcCH----------HHHHHHHhh
Confidence 4677777666666654 22 2678999999875 779999854
No 152
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=73.49 E-value=1.3 Score=32.85 Aligned_cols=39 Identities=15% Similarity=0.328 Sum_probs=32.9
Q ss_pred CceeehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 153 GAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 153 ~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
..-|.|...|.+|+ ..|..+++|+..||+.+++.|....
T Consensus 18 ~~eyeVEkIld~r~-~~g~~~YlVKWkGy~~~~nTWEP~e 56 (72)
T 1pdq_A 18 DLVYAAEKIIQKRV-KKGVVEYRVKWKGWNQRYNTWEPEV 56 (72)
T ss_dssp CEEEEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGG
T ss_pred CceEEEEEEEEEEE-eCCcEEEEEEECCCCCccCeecchH
Confidence 34577888899987 4677999999999999999999765
No 153
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=73.17 E-value=4.4 Score=27.34 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=31.9
Q ss_pred CccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhc
Q 024859 10 PAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQN 69 (261)
Q Consensus 10 pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQN 69 (261)
.+..||++.-.++...+.. ......-..++|..||+++ .+|..|...
T Consensus 2 ~r~~ys~efK~~~~~~~~~---g~s~~~~~~~vA~~~gIs~----------~tl~~W~~~ 48 (59)
T 2glo_A 2 SRRIFTPHFKLQVLESYRN---DNDCKGNQRATARKYNIHR----------RQIQKWLQC 48 (59)
T ss_dssp CCCCCCHHHHHHHHHHHHH---CTTTTTCHHHHHHHTTSCH----------HHHHHHHTT
T ss_pred CCCcCCHHHHHHHHHHHHc---CCCcchHHHHHHHHHCcCH----------HHHHHHHHH
Confidence 3457999888887544444 2221123679999999765 899999754
No 154
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=72.91 E-value=4.2 Score=27.05 Aligned_cols=47 Identities=6% Similarity=0.090 Sum_probs=35.8
Q ss_pred cCHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhh
Q 024859 14 FNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (261)
Q Consensus 14 FT~~Ql~eLEk~F~~---~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQ 68 (261)
+|++++.+|.++|.. .++.+++..+...+...++.. ++..+|+.+|+
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~--------~~~~~~~~~~~ 50 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFD--------VKKPEILELMN 50 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCC--------CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCC--------CCHHHHHHHHH
Confidence 578899999999975 345788988888888888754 56677777665
No 155
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=72.66 E-value=5.4 Score=29.73 Aligned_cols=51 Identities=8% Similarity=0.115 Sum_probs=38.5
Q ss_pred CccccCHHHHHHHHHHHHhc----cCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhh
Q 024859 10 PAFRFNPAEVTEMEGILQEH----HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (261)
Q Consensus 10 pRt~FT~~Ql~eLEk~F~~~----~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQ 68 (261)
+...||+.|+.+|+++|... ++.+++..+...+-..++.. ++..+++..|+
T Consensus 3 ~~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~--------~~~~~~~~l~~ 57 (158)
T 2jnf_A 3 DVSKLSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQ--------QTKSTIRQLID 57 (158)
T ss_dssp CSTTSCHHHHHHHHHHHHHSBCSSSCSSEEHHHHHHHHHHTTCS--------CSHHHHHHHHH
T ss_pred chhhCCHHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHHHhCCC--------CCHHHHHHHHH
Confidence 34578999999999999753 46789998888888888754 35566666554
No 156
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=71.60 E-value=4.5 Score=27.36 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=26.2
Q ss_pred ccCCceEEEEeecCccceeeeeEEEeeeeccCCCCcceeEEEEEEc-cCCCc
Q 024859 210 VLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYD-HDQSE 260 (261)
Q Consensus 210 v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r~~Hd~~~C~C~F~Vr~~-hd~sE 260 (261)
.++||++++.- .++..||.|.|++|.... . .+.|.|. .+|+|
T Consensus 2 wk~G~~c~A~~--s~Dg~wYrA~I~~i~~~~---~----~~~V~fvDYGn~e 44 (54)
T 3s6w_A 2 WKPGDECFALY--WEDNKFYRAEVEALHSSG---M----TAVVKFIDYGNYE 44 (54)
T ss_dssp CCTTCEEEEEE--TTTTEEEEEEEEEC--CC---S----EEEEEETTTCCEE
T ss_pred CCCCCEEEEEE--CCCCCEEEEEEEEEeCCC---C----EEEEEEEccCCeE
Confidence 36899888765 224579999999986431 1 3456664 35554
No 157
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*
Probab=71.03 E-value=1.6 Score=31.90 Aligned_cols=37 Identities=24% Similarity=0.466 Sum_probs=31.6
Q ss_pred eeehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 155 WYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 155 Wydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
=|.|...|.+|+. .|..+++|+..||+.++..|....
T Consensus 13 ey~VE~Il~~r~~-~g~~~YlVKWkGy~~~~~TWEp~~ 49 (73)
T 1ap0_A 13 EYVVEKVLDRRVV-KGKVEYLLKWKGFSDEDNTWEPEE 49 (73)
T ss_dssp CCEEEEEEEEEEC-SSSEEEEEEEESSSSCCCEEEETT
T ss_pred eEEEEEEEEEEEe-CCeEEEEEEECCCCCccCcEeeHH
Confidence 3678888999875 678999999999999999998765
No 158
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=70.88 E-value=9.1 Score=28.58 Aligned_cols=52 Identities=13% Similarity=0.242 Sum_probs=39.3
Q ss_pred CccccCHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhc
Q 024859 10 PAFRFNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQN 69 (261)
Q Consensus 10 pRt~FT~~Ql~eLEk~F~~---~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQN 69 (261)
....||+.|+.+|.++|.. .++.+++..+...+-..++.. ++..+++..|++
T Consensus 8 ~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~--------~~~~~~~~~~~~ 62 (156)
T 1wdc_B 8 VLTKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRA--------PDDKELTAMLKE 62 (156)
T ss_dssp ----CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHHSSC--------CCHHHHHHHHTT
T ss_pred hhccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCC--------CCHHHHHHHHHh
Confidence 3457999999999999975 356789999998888888865 466778877764
No 159
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=70.85 E-value=6.6 Score=30.58 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=30.7
Q ss_pred ccccCCceEEEEeecCccceeeeeEEEeeeeccCCCCcceeEEEEEEccC
Q 024859 208 VAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHD 257 (261)
Q Consensus 208 ~~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r~~Hd~~~C~C~F~Vr~~hd 257 (261)
..+..|+.|+|+. +..+|.|.|++|..+. ..-.|.|-|.-=
T Consensus 24 ~~~~vG~kv~v~~----~~~~yeAeIl~ir~~~-----g~~~YYVHY~g~ 64 (94)
T 2rnz_A 24 DDIIIKCQCWVQK----NDEERLAEILSINTRK-----APPKFYVHYVNY 64 (94)
T ss_dssp GGCCTTEEEEEEC----SSCEEEEEEEEEECSS-----SSCEEEEECTTS
T ss_pred ccccCCCEEEEEE----CCEEEEEEEEEEEEcC-----CCcEEEEEeCCc
Confidence 3578999999996 3589999999998642 234677877643
No 160
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=72.96 E-value=0.91 Score=34.56 Aligned_cols=38 Identities=24% Similarity=0.607 Sum_probs=27.4
Q ss_pred cccCCceEEEEeecCccceeeeeEEEeeeeccCCCCcceeEEEEEEc
Q 024859 209 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYD 255 (261)
Q Consensus 209 ~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r~~Hd~~~C~C~F~Vr~~ 255 (261)
.+..|+.|+|+..+ .+|+|.|++|.... ..-.|.|-|.
T Consensus 12 ~~~~Gekv~~~~~~----~~y~AkIl~i~~~~-----~~~~YyVHY~ 49 (85)
T 2lrq_A 12 LFVDGERVLCFHGP----LIYEAKVLKTKPDA-----TPVEYYIHYA 49 (85)
Confidence 46799999999943 67999999998531 2234666664
No 161
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=69.61 E-value=27 Score=25.17 Aligned_cols=45 Identities=11% Similarity=0.244 Sum_probs=32.1
Q ss_pred CCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhc
Q 024859 8 GGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQN 69 (261)
Q Consensus 8 ~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQN 69 (261)
++++..||.++..+.=+++.. +. -..+||..||+|. ..|..|...
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~--g~-----s~~~iA~~~gIs~----------sTl~rW~k~ 61 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHD--GE-----SKASVARDIGVPE----------STLRGWCKN 61 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHH--TC-----CHHHHHHHHTCCH----------HHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHC--CC-----CHHHHHHHHCcCH----------HHHHHHHHH
Confidence 345678999887666666643 21 2568999999875 889999853
No 162
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=68.32 E-value=1.7 Score=31.81 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=33.5
Q ss_pred CCceeehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 152 DGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 152 D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
+..-|.|...|.+|+. .|..++.|+..||..+++.|....
T Consensus 10 ~~~~y~VE~Il~~r~~-~g~~~YlVKWkGy~~~~~TWEp~~ 49 (74)
T 2kvm_A 10 GEQVFAVESIRKKRVR-KGKVEYLVKWKGWPPKYSTWEPEE 49 (74)
T ss_dssp CCCCCCEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEETT
T ss_pred CCccEEEEEEEEEEEe-CCcEEEEEEEcCCCCccCeEeeHH
Confidence 3445788889999975 677999999999999999998765
No 163
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*
Probab=68.19 E-value=1.3 Score=32.82 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=31.6
Q ss_pred eeehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 155 WYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 155 Wydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
=|.|...|.+|+. .|..+++|+..||+.+++.|....
T Consensus 21 eyeVEkIld~r~~-~g~~~YlVKWkGy~~~~~TWEp~e 57 (73)
T 2k1b_A 21 VFAVESIRKKRVR-KGKVEYLVKWKGWPPKYSTWEPEE 57 (73)
T ss_dssp CCCCSEEEEEEEE-TTEEEEEEECTTCCGGGCCEEETT
T ss_pred eEEEEEEEEEEEc-CCcEEEEEEECCCCcccCeecchH
Confidence 4688888998864 677899999999999999998765
No 164
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=68.10 E-value=11 Score=27.37 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=31.6
Q ss_pred cccCHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCCC
Q 024859 12 FRFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSES 49 (261)
Q Consensus 12 t~FT~~Ql~eLEk~F~~~---~n~yp~~~~rq~LA~~f~lS 49 (261)
..||+.|+.+|+++|... ++.+++..+...+...++..
T Consensus 3 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~ 43 (153)
T 3ox6_A 3 RSLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYM 43 (153)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHTTCC
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCC
Confidence 358999999999999763 56899999988888888764
No 165
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.99 E-value=25 Score=24.90 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=41.8
Q ss_pred CccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhhcc
Q 024859 10 PAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (261)
Q Consensus 10 pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k~~ 79 (261)
.+-.||++|-..|++++...+........=..||+.|.- =|.+||+.-|||--.+..+...
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~---------Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN---------RTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSS---------SCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCC---------CCHHHHHHHHHHHHHHHHhcCC
Confidence 345799999999999998853222223678899999961 1458999777776555444333
No 166
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=67.95 E-value=6.7 Score=26.63 Aligned_cols=50 Identities=10% Similarity=0.080 Sum_probs=38.1
Q ss_pred ccccCHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhh
Q 024859 11 AFRFNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (261)
Q Consensus 11 Rt~FT~~Ql~eLEk~F~~---~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQ 68 (261)
...+|++++.+|.++|.. .++.+++..+...+-..++.. ++..+|...|+
T Consensus 5 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~--------~~~~~~~~~~~ 57 (85)
T 2ktg_A 5 KKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGAN--------PTKQKISEIVK 57 (85)
T ss_dssp CCSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSC--------CCHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCC--------CCHHHHHHHHH
Confidence 456899999999999975 345788888888888777753 56677777665
No 167
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=67.55 E-value=10 Score=28.21 Aligned_cols=52 Identities=6% Similarity=0.070 Sum_probs=39.5
Q ss_pred CCccccCHHHHHHHHHHHHhc---c-CCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhh
Q 024859 9 GPAFRFNPAEVTEMEGILQEH---H-NAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (261)
Q Consensus 9 ~pRt~FT~~Ql~eLEk~F~~~---~-n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQ 68 (261)
.....||+.|+.+|.++|... + +.+++..+...+-..++.. ++..+++.+|+
T Consensus 7 ~~~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~--------~~~~~~~~~~~ 62 (161)
T 1dtl_A 7 AAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQN--------PTPEELQEMID 62 (161)
T ss_dssp TGGGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCC--------CCHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCC--------CCHHHHHHHHH
Confidence 345679999999999999863 3 5789999888888888754 35556666654
No 168
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=66.62 E-value=2.1 Score=30.41 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=32.5
Q ss_pred ceeehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 154 AWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 154 AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
-=|.|...|.+|+. .|..+++|+..||..+++.|....
T Consensus 9 ~ey~VE~Il~~r~~-~g~~~YlVKWkGy~~~~~TWEp~~ 46 (64)
T 2dnv_A 9 RVFAAEALLKRRIR-KGRMEYLVKWKGWSQKYSTWEPEE 46 (64)
T ss_dssp CCCCCCCEEEEEES-SSSEEEEECCSSCCCSSCCEEETT
T ss_pred ceEEEEEEEEEEEe-CCcEEEEEEECCCCcccCCccCHh
Confidence 34688889999974 678999999999999999998765
No 169
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=66.55 E-value=6.1 Score=29.46 Aligned_cols=52 Identities=6% Similarity=0.095 Sum_probs=40.8
Q ss_pred CccccCHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhc
Q 024859 10 PAFRFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQN 69 (261)
Q Consensus 10 pRt~FT~~Ql~eLEk~F~~~---~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQN 69 (261)
..+.||+.|+.+|.++|... ++.+++..+...+-..++.. ++..+|+..|+.
T Consensus 6 ~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~--------~~~~~~~~~~~~ 60 (153)
T 2ovk_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRV--------PPDDELNAMLKE 60 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSC--------CCHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCC--------CCHHHHHHHHHH
Confidence 46789999999999999853 56789998888887777754 577778877765
No 170
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=65.90 E-value=4.6 Score=31.85 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=36.3
Q ss_pred ccCHHHHHHHHHHHHh-----ccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhh
Q 024859 13 RFNPAEVTEMEGILQE-----HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWF 67 (261)
Q Consensus 13 ~FT~~Ql~eLEk~F~~-----~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WF 67 (261)
.+|++||++|.++|.. .+..+++..+...+-++||..+ |+.+|+..+
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~--------t~~el~~~~ 53 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNP--------TEAQVHQHG 53 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCC--------CHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCC--------CHHHHHHHH
Confidence 4799999999999974 3457899988888888888763 666676533
No 171
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=65.77 E-value=2.2 Score=33.71 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.2
Q ss_pred CCCeEEEEecCCCCCccceeccc
Q 024859 170 ADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 170 ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
|...++|+|.|+...=||||..-
T Consensus 57 ~~~~Y~VHY~GWn~rwDEWV~ed 79 (101)
T 3m9q_A 57 RFYEYKIHFQGWRPSYDRAVRAT 79 (101)
T ss_dssp EEEEEEEEETTSCGGGCEEECGG
T ss_pred CceEEEEEeCCCCcCceeecCHH
Confidence 45789999999999999999854
No 172
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=65.72 E-value=13 Score=27.96 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=36.8
Q ss_pred CccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhh
Q 024859 10 PAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYA 73 (261)
Q Consensus 10 pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k 73 (261)
+|..||.++-.++=+.+.+. .... ..+||+.||++. ..|..|..++..-
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~--g~~~---~~~~A~~~gvs~----------stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEEN--PDLR---KGEIARRFNIPP----------STLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHC--TTSC---HHHHHHHHTCCH----------HHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHC--CCCc---HHHHHHHhCCCH----------HHHHHHHhchhhh
Confidence 57889999998887777553 3333 347999999764 8899999887653
No 173
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=65.63 E-value=5.6 Score=26.12 Aligned_cols=44 Identities=20% Similarity=0.100 Sum_probs=32.0
Q ss_pred CCCCCCC---CCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHh
Q 024859 2 GRPPSNG---GPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKF 46 (261)
Q Consensus 2 grPp~~~---~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f 46 (261)
|||...+ +-.++++++...+|+.+-... +...+.-.++.|.+.+
T Consensus 1 GRP~~~~~~~~i~vrl~~el~~~l~~~a~~~-g~s~s~~ir~ai~~~l 47 (55)
T 2k9i_A 1 GRPYKLLNGIKLGVYIPQEWHDRLMEIAKEK-NLTLSDVCRLAIKEYL 47 (55)
T ss_dssp CCCSSTTCCEEEEEEECHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred CCCCCCCccceEEEEcCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 8997543 344589999999999999986 4556666666666554
No 174
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=64.80 E-value=12 Score=28.15 Aligned_cols=50 Identities=8% Similarity=0.176 Sum_probs=40.1
Q ss_pred cccCHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCC-CccccCCcccccchhhhhhhc
Q 024859 12 FRFNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSE-SPERKGKIMVQMKQVWNWFQN 69 (261)
Q Consensus 12 t~FT~~Ql~eLEk~F~~---~~n~yp~~~~rq~LA~~f~l-S~~RaGK~~lt~~QVk~WFQN 69 (261)
..||+.|+.+|.++|.. .++.+++..+...+...++. . ++..++...|++
T Consensus 17 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~--------~~~~~~~~l~~~ 70 (166)
T 2mys_B 17 SMFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLN--------VKNEELDAMIKE 70 (166)
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCC--------CCHHHHHHHHHH
Confidence 36899999999999975 34688999999988888876 4 466778877764
No 175
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.33 E-value=2.9 Score=30.57 Aligned_cols=38 Identities=16% Similarity=0.381 Sum_probs=32.3
Q ss_pred ceeehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 154 AWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 154 AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
.=|.|...|.+|+. .|..+++|+..||..+++.|....
T Consensus 9 ~ey~VE~Il~~r~~-~g~~~YlVKWkGy~~~~~TWEp~~ 46 (74)
T 2d9u_A 9 QVFAAECILSKRLR-KGKLEYLVKWRGWSSKHNSWEPEE 46 (74)
T ss_dssp CCCCEEEEEEEEEE-TTEEEEEEEETTSCTTTCEEEEGG
T ss_pred ccEEEEEEEEEEEe-CCcEEEEEEECCCCCccCccccHH
Confidence 34688889999975 577999999999999999998765
No 176
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=63.87 E-value=10 Score=28.57 Aligned_cols=43 Identities=5% Similarity=-0.023 Sum_probs=32.0
Q ss_pred CCCCccccCHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCCC
Q 024859 7 NGGPAFRFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSES 49 (261)
Q Consensus 7 ~~~pRt~FT~~Ql~eLEk~F~~~---~n~yp~~~~rq~LA~~f~lS 49 (261)
....+..|++.|+.+|+++|... ++.+++..+...+-..++..
T Consensus 15 ~~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~ 60 (169)
T 3qrx_A 15 QKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFE 60 (169)
T ss_dssp -----CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCC
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCC
Confidence 34567889999999999999763 45789998888888888764
No 177
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=61.91 E-value=5.3 Score=32.58 Aligned_cols=47 Identities=19% Similarity=0.323 Sum_probs=30.0
Q ss_pred eEEeeccCCC----ceeehhhhhhcccccCCCCeEEEEecCCCCCccceecccccccc
Q 024859 144 EFEAKSARDG----AWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQ 197 (261)
Q Consensus 144 efEa~S~~D~----AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~~~vR~ 197 (261)
+-|+.|..++ .||-..+-... | .-..|.|.||++.-+|||.+. ++|.
T Consensus 66 ~VEV~~~~~d~ep~gWw~a~I~~~k-----g-~f~~V~y~~~~~~~~EiV~~~-rlR~ 116 (128)
T 3h8z_A 66 EVEVYSRANEQEPCGWWLARVRMMK-----G-DFYVIEYAACDATYNEIVTLE-RLRP 116 (128)
T ss_dssp EEEEEECC---CCCEEEEEEEEEEE-----T-TEEEEEETTC----CEEECGG-GEEE
T ss_pred EEEEEecCCCCCcCccEEEEEEEee-----C-CEEEEEEcCCCCCcceEEehh-heEe
Confidence 4567777777 89987643221 4 678999999999999999976 5554
No 178
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=61.34 E-value=8.1 Score=26.36 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=34.0
Q ss_pred cccCHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhh
Q 024859 12 FRFNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (261)
Q Consensus 12 t~FT~~Ql~eLEk~F~~---~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQ 68 (261)
..+|++++.+|..+|.. .++.+++..+...+-..++ . ++..+|+.+|+
T Consensus 3 ~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g-~--------~~~~~~~~~~~ 53 (86)
T 2opo_A 3 AEDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLG-S--------VTPDEVRRMMA 53 (86)
T ss_dssp ---CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTT-T--------CCHHHHHHHHH
T ss_pred ccCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcC-C--------CCHHHHHHHHH
Confidence 35899999999999975 3467888888877777766 2 46667776664
No 179
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=61.23 E-value=18 Score=30.91 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=38.2
Q ss_pred cccccccccCCceEEEEeecCccceeeeeEEEeeeeccCC-----------CCcceeEEEEEEccC
Q 024859 203 EASECVAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHD-----------VRGCRCRFLVRYDHD 257 (261)
Q Consensus 203 e~~eC~~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r~~Hd-----------~~~C~C~F~Vr~~hd 257 (261)
-+..+.--+.||+|=|--.+ ...||-|+|+.|+|+.-. ..++.+.+-|.||..
T Consensus 4 ~d~~~glYKinelVDarD~~--~GAWFEA~Iv~Vtr~~~~~~~p~~s~~~~~~~edviYhVkyddy 67 (161)
T 3db3_A 4 DETELGLYKVNEYVDARDTN--MGAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDY 67 (161)
T ss_dssp CCBCCCSSCTTCEEEEECTT--TCCEEEEEEEEEEEC-----------------CCEEEEEEESSC
T ss_pred cccccceEEecceeeeeccC--CCcceEEEEEEEEecCCCCCCcccccccCCCcCceEEEEEeccC
Confidence 34567777899999886543 478999999999996431 236889999999854
No 180
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=61.19 E-value=3.2 Score=29.70 Aligned_cols=34 Identities=15% Similarity=0.323 Sum_probs=28.0
Q ss_pred hhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 158 VSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 158 v~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
|...|.+|+. .|..+++|+..||+.+++.|....
T Consensus 3 VE~Il~~r~~-~g~~~YlVKWkGy~~~~~TWEp~~ 36 (64)
T 3mts_A 3 VEYLCDYKKI-REQEYYLVKWRGYPDSESTWEPRQ 36 (64)
T ss_dssp EEEEEEEEEC-SSCEEEEEEETTSCGGGCEEEEGG
T ss_pred ceEEEEEEEe-CCeEEEEEEEecCCCcCCcEeEHH
Confidence 4456777765 688999999999999999998765
No 181
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=59.77 E-value=22 Score=27.24 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=36.8
Q ss_pred CCCCCCCC--------CCccccCHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHhC
Q 024859 1 MGRPPSNG--------GPAFRFNPAEVTEMEGILQEH-HNAMPSREILVALAEKFS 47 (261)
Q Consensus 1 mgrPp~~~--------~pRt~FT~~Ql~eLEk~F~~~-~n~yp~~~~rq~LA~~f~ 47 (261)
||.+.++= ...+.||..||.+|=+.|... ++.+++..+...+-..++
T Consensus 1 MG~~~~~l~~~~l~~l~~~~~~~~~~i~~~~~~fd~~~~~G~i~~~e~~~~l~~~~ 56 (190)
T 1fpw_A 1 MGAKTSKLSKDDLTCLKQSTYFDRREIQQWHKGFLRDCPSGQLAREDFVKIYKQFF 56 (190)
T ss_dssp CCCCSCCSTTHHHHHHTTTCCSTHHHHHHHHHHHHHHCTTCCEEHHHHHHHHHHHC
T ss_pred CCcccCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCcCcHHHHHHHHHHHc
Confidence 78776531 233679999999999999876 688999988888888774
No 182
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=59.52 E-value=17 Score=28.35 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=30.9
Q ss_pred ccCCceEEEEeecCccceeeeeEEEeeeeccCCCCcceeEEEEEEccC
Q 024859 210 VLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHD 257 (261)
Q Consensus 210 v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r~~Hd~~~C~C~F~Vr~~hd 257 (261)
..||..|+|++. +.++|.|+|+++..+.. ....-.|.|-|..-
T Consensus 15 ~~~~e~vlc~~~---dg~~yeAeIl~ir~~~~--~~~~~~YYVHY~g~ 57 (92)
T 2bud_A 15 ENPDKIYFIRRE---DGTVHRGQVLQSRTTEN--AAAPDEYYVHYVGL 57 (92)
T ss_dssp TCTTSCEEEECT---TSCEEEEEEEEEECTTT--CSSCCEEEEECSSS
T ss_pred CCCCCEEEEEeC---CCCEEEEEEEEEeeccC--CCCCcEEEEEeCCc
Confidence 346889999993 34799999999875432 23455788888653
No 183
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=59.51 E-value=5 Score=30.46 Aligned_cols=48 Identities=8% Similarity=0.201 Sum_probs=35.9
Q ss_pred ccCHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhh
Q 024859 13 RFNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (261)
Q Consensus 13 ~FT~~Ql~eLEk~F~~---~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQ 68 (261)
-||++||++|.++|.. .++.+++..+...+-..++..+ +..+|...|+
T Consensus 3 ~lt~eqi~el~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~--------~~~~~~~~~~ 53 (148)
T 2lmt_A 3 ELTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTLGQNP--------TEAELQDLIA 53 (148)
T ss_dssp SCCSHHHHHHHHHHHHHHCSSCCEEEGGGHHHHHHHHTCCC--------CHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhcCCCc--------hHHHHHHHHH
Confidence 4899999999999876 3567888888888888887653 5555655444
No 184
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=59.50 E-value=14 Score=27.40 Aligned_cols=37 Identities=5% Similarity=0.172 Sum_probs=30.0
Q ss_pred ccCHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCCC
Q 024859 13 RFNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSES 49 (261)
Q Consensus 13 ~FT~~Ql~eLEk~F~~---~~n~yp~~~~rq~LA~~f~lS 49 (261)
.+|+.|+.+|.++|.. .++.+++..+...+...++..
T Consensus 3 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~ 42 (148)
T 1exr_A 3 QLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQN 42 (148)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCC
Confidence 5799999999999975 346788988888888888765
No 185
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=59.18 E-value=8.4 Score=27.88 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=29.3
Q ss_pred ccCHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCCC
Q 024859 13 RFNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSES 49 (261)
Q Consensus 13 ~FT~~Ql~eLEk~F~~---~~n~yp~~~~rq~LA~~f~lS 49 (261)
.+|++|+.+|+++|.. .++.+++.++...+-.+++++
T Consensus 3 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~ 42 (95)
T 1c07_A 3 VVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLP 42 (95)
T ss_dssp SSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCC
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCC
Confidence 3688999999999975 346889998888877777754
No 186
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=58.22 E-value=29 Score=25.30 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=35.8
Q ss_pred CCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhh
Q 024859 9 GPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (261)
Q Consensus 9 ~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQ 68 (261)
.....+|.+|...||+++.......+ ..=+.||+.+|-| .+||+.=|+
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~--~RW~~IA~~lgRt----------~~eV~~~y~ 53 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTP--GRWEKIAHELGRS----------VTDVTTKAK 53 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCT--THHHHHHHHHTSC----------HHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCC--cHHHHHHHHhCCC----------HHHHHHHHH
Confidence 34557999999999999988533333 4578899999865 499986443
No 187
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=58.05 E-value=15 Score=28.21 Aligned_cols=37 Identities=11% Similarity=0.150 Sum_probs=31.1
Q ss_pred cccCHHHHHHHHHHHHh-ccCCCCCHHHHHHHHHHhCC
Q 024859 12 FRFNPAEVTEMEGILQE-HHNAMPSREILVALAEKFSE 48 (261)
Q Consensus 12 t~FT~~Ql~eLEk~F~~-~~n~yp~~~~rq~LA~~f~l 48 (261)
+.||..||.+|-+.|.. .++.+++..+...+-..++.
T Consensus 13 ~~~s~~~i~~l~~~fd~~d~~G~i~~~e~~~~l~~~~~ 50 (183)
T 1s6c_A 13 TNFTKRELQVLYRGFKNEXPSGVVNEETFKQIYAQFFP 50 (183)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTSEECHHHHHHHHHHHST
T ss_pred cCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHcC
Confidence 57899999999999998 46788999888888777763
No 188
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=57.89 E-value=12 Score=36.38 Aligned_cols=51 Identities=4% Similarity=0.098 Sum_probs=41.8
Q ss_pred ccccCHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhc
Q 024859 11 AFRFNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQN 69 (261)
Q Consensus 11 Rt~FT~~Ql~eLEk~F~~---~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQN 69 (261)
+-.||++||++|.++|.. .++.+++..+...+-..|++. +++.+|+.-|+.
T Consensus 293 ~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~--------~TeeEI~~Lf~~ 346 (440)
T 3u0k_A 293 RDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN--------PTEAELQDMINE 346 (440)
T ss_dssp CBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCC--------CCHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCC--------CCHHHHHHHHHH
Confidence 457999999999999985 357899999998888888865 577888876653
No 189
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=56.84 E-value=5.3 Score=32.08 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=28.1
Q ss_pred CCCceeehhhhhhccccc--CC--CCeEEEEecCCCCCccceeccc
Q 024859 151 RDGAWYDVSAFLAQRNFD--TA--DPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 151 ~D~AWydv~~fl~~R~l~--~g--e~ev~Vrf~gFg~eedewvnv~ 192 (261)
+..-||+..+ |.-+.-. .| ..+++|+|.|+...=||||..-
T Consensus 35 k~~~lYeAKI-l~v~~~~~~~g~~~~~Y~VHY~GWn~~wDEWV~e~ 79 (110)
T 3m9p_A 35 KARVLYDAKI-VDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAED 79 (110)
T ss_dssp SCCCEEEEEE-EEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGG
T ss_pred CCCCceeeEE-EEEEeccCcccccceEEEEEECCCCcchhhccCHh
Confidence 3368888653 3333222 22 2689999999999999999753
No 190
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=56.30 E-value=10 Score=27.75 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=28.7
Q ss_pred ccccCCceEEEEeecCccceeeeeEEEeeeeccCCCCcceeEEEEEEcc-CCCc
Q 024859 208 VAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDH-DQSE 260 (261)
Q Consensus 208 ~~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r~~Hd~~~C~C~F~Vr~~h-d~sE 260 (261)
...++||++++... ++..||-|+|++|... .. .+.|.|.. +|+|
T Consensus 8 ~~~~~G~~c~A~~s--~Dg~wYRA~I~~i~~~---~~----~~~V~fiDYGN~e 52 (78)
T 2d9t_A 8 KVWKPGDECFALYW--EDNKFYRAEVEALHSS---GM----TAVVKFTDYGNYE 52 (78)
T ss_dssp CCCCTTCEEEEECT--TTCCEEEEEEEEECSS---SS----EEEEEETTTTEEE
T ss_pred cCCCcCCEEEEEEC--CCCCEEEEEEEEEeCC---CC----EEEEEEEcCCCeE
Confidence 45789999886553 2457999999999632 12 45666643 4444
No 191
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=55.62 E-value=15 Score=30.02 Aligned_cols=28 Identities=11% Similarity=0.278 Sum_probs=21.7
Q ss_pred cccCCceEEEEeecCccceeeeeEEEeeee
Q 024859 209 AVLPGDLILCFQEGKDQALYFDAHVLDAQR 238 (261)
Q Consensus 209 ~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r 238 (261)
.+++|+++++... ++..||-|.|+++..
T Consensus 47 ~~~~G~~c~A~~~--~d~~wyRa~I~~~~~ 74 (169)
T 3ntk_A 47 DLKEGALCVAQFP--EDEVFYRAQIRKVLD 74 (169)
T ss_dssp CCCTTCEEEEEET--TTTEEEEEEEEEECS
T ss_pred CCCCCCEEEEEEC--CCCcEEEEEEEEECC
Confidence 6889998876542 246899999999865
No 192
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.24 E-value=5.8 Score=30.53 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=28.6
Q ss_pred ceEEeeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCcc
Q 024859 143 MEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEED 186 (261)
Q Consensus 143 ~efEa~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eed 186 (261)
+--=|+.+.|++||-..+.-. .++..+.|.|-.||+++-
T Consensus 26 ~~vaak~~d~n~WyRakV~~v-----~~~~~veVl~~DyGn~~~ 64 (85)
T 2eqk_A 26 MHCAVKIQDKNQWRRGQIIRM-----VTDTLVEVLLYDVGVELV 64 (85)
T ss_dssp CEEEEECSSSCCEEEEEEEEE-----CSSSEEEEECTTTCCEEE
T ss_pred CEEEEEeCCCCeEEEEEEEEe-----cCCCeEEEEEEccCCEEE
Confidence 344577788889998775432 234669999999999874
No 193
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=55.12 E-value=12 Score=26.84 Aligned_cols=38 Identities=5% Similarity=-0.080 Sum_probs=30.0
Q ss_pred ccCHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCCCc
Q 024859 13 RFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSESP 50 (261)
Q Consensus 13 ~FT~~Ql~eLEk~F~~~---~n~yp~~~~rq~LA~~f~lS~ 50 (261)
.+|++|+.++.++|... ++.+++.++...+-..++++.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~ 42 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPI 42 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCH
Confidence 46899999999999752 467899888888877777653
No 194
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.80 E-value=16 Score=27.19 Aligned_cols=37 Identities=14% Similarity=0.164 Sum_probs=29.1
Q ss_pred CcccccccccCCceEEEEeecCccceeeeeEEEeeeeccC
Q 024859 202 CEASECVAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRH 241 (261)
Q Consensus 202 le~~eC~~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r~~H 241 (261)
|-.+-|..+.+|+.|||-.. +-+||-+.|..|...++
T Consensus 2 ~~g~~~~~f~eGqdVLarWs---DGlfYlGtV~kV~~~~~ 38 (68)
T 2e5p_A 2 SSGSSGPRLWEGQDVLARWT---DGLLYLGTIKKVDSARE 38 (68)
T ss_dssp CCCCCCCCCCTTCEEEEECT---TSSEEEEEEEEEETTTT
T ss_pred CCCCCCcccccCCEEEEEec---CCcEEEeEEEEEecCCc
Confidence 34567899999999998554 36899999999985443
No 195
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Probab=54.36 E-value=6 Score=35.14 Aligned_cols=100 Identities=14% Similarity=0.204 Sum_probs=64.4
Q ss_pred cceEEeeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCccceecccc--------------------ccc-----
Q 024859 142 FMEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKR--------------------HVR----- 196 (261)
Q Consensus 142 ~~efEa~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~~--------------------~vR----- 196 (261)
.|-+||.-.++-.-|=|++.+.- .| .-|+|||.|+.+..|.|+++-. .++
T Consensus 66 GmKLEa~D~~~~~~~~vATV~~v----~g-~~l~l~~dG~d~~~DfW~~~~S~~I~PvGwc~~~g~~L~pP~g~~~~~f~ 140 (243)
T 2biv_A 66 GMKLEARDPRNATSVCIATVIGI----TG-ARLRLRLDGSDNRNDFWRLVDSPDIQPVGTCEKEGDLLQPPLGYQMNTSS 140 (243)
T ss_dssp TCEEEEEETTEEEEEEEEEEEEE----ET-TEEEEEETTSCSSSCEEEETTCTTEECTTHHHHTTCCCCCCTTCSSCGGG
T ss_pred CCEEEEecCCCCCcEEEEEEEEE----eC-CEEEEEECCCCCCCCEeecCCCCccccChhHHhcCCccCCCcccccccch
Confidence 47789888777666667766654 34 7899999999999999998631 121
Q ss_pred -----------cccccCcccc-------cccccCCceEEEEeecCccceeeeeEEEeeeeccCCCCcceeEEEEEEcc
Q 024859 197 -----------QRSLPCEASE-------CVAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDH 256 (261)
Q Consensus 197 -----------~rS~ple~~e-------C~~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r~~Hd~~~C~C~F~Vr~~h 256 (261)
...+|-+... =+..++|..|-+--.. +..++|=|.|.+|.-. ++.|+||-
T Consensus 141 W~~yL~~tl~ga~~aP~~lF~~~~~~~~~~~F~~GmKLEavD~~-~p~~icvATV~~v~g~---------rl~v~fDg 208 (243)
T 2biv_A 141 WPMFLLKTLNGSEMASATLFKKEPPKPPLNNFKVGMKLEAIDKK-NPYLICPATIGDVKGD---------EVHITFDG 208 (243)
T ss_dssp HHHHHHHHHTTCCBCCGGGSCCCCCCCSSCCCCTTCEEEEECTT-STTCEEEEEEEEEETT---------EEEEEETT
T ss_pred HHHHHHHhccCCccCCHHHhccCCCCCccccccCCCEEEEEccC-CCCeEEEEEEEEecCC---------EEEEEECC
Confidence 1223332211 1356667666554433 3568899999999632 35677753
No 196
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=54.30 E-value=5 Score=33.22 Aligned_cols=20 Identities=25% Similarity=0.642 Sum_probs=18.7
Q ss_pred eEEEEecCCCCCccceeccc
Q 024859 173 EVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 173 ev~Vrf~gFg~eedewvnv~ 192 (261)
+++|||.||-..=||||..-
T Consensus 78 ~Y~VHY~GWn~rwDEWV~~d 97 (136)
T 2k3y_A 78 SFFIHYQGWKSSWDEWVGYD 97 (136)
T ss_dssp EEEECCTTSCGGGCEEEETT
T ss_pred eEEEEeCCcCCcceeeecHh
Confidence 89999999999999999864
No 197
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=54.15 E-value=25 Score=25.82 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=21.6
Q ss_pred ccccCCceEEEEeecCccceeeeeEEEeee
Q 024859 208 VAVLPGDLILCFQEGKDQALYFDAHVLDAQ 237 (261)
Q Consensus 208 ~~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~ 237 (261)
..+++||++++.. .++..||-|.|++|.
T Consensus 26 ~~~~~G~~c~a~~--~~d~~wyRA~I~~~~ 53 (94)
T 3fdr_A 26 LTVHVGDIVAAPL--PTNGSWYRARVLGTL 53 (94)
T ss_dssp CCCCTTCEEEEEE--TTTTEEEEEEEEEEC
T ss_pred CCCCCCCEEEEEE--CCCCeEEEEEEEEEC
Confidence 4678999887644 224689999999995
No 198
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Probab=54.03 E-value=3.6 Score=30.49 Aligned_cols=49 Identities=8% Similarity=0.072 Sum_probs=28.2
Q ss_pred cccCHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhh
Q 024859 12 FRFNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (261)
Q Consensus 12 t~FT~~Ql~eLEk~F~~---~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQ 68 (261)
+.||+.|+.+|.++|.. .++.+++..+...+-..++.. ++..+|+..|+
T Consensus 2 ~~ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~--------~~~~~~~~l~~ 53 (151)
T 1w7j_B 2 IEFNKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQN--------PTNAEVLKVLG 53 (151)
T ss_dssp ---------CHHHHHHHHCCSSSSEEESTTHHHHHHHTTCC--------CCHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCC--------CCHHHHHHHHH
Confidence 35899999999999976 345678887777777777754 35566666664
No 199
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=52.96 E-value=17 Score=26.31 Aligned_cols=38 Identities=11% Similarity=0.130 Sum_probs=30.1
Q ss_pred cccCHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCCC
Q 024859 12 FRFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSES 49 (261)
Q Consensus 12 t~FT~~Ql~eLEk~F~~~---~n~yp~~~~rq~LA~~f~lS 49 (261)
..+|+.|+.+|.++|... ++.+++..+...+...++..
T Consensus 3 ~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~ 43 (147)
T 4ds7_A 3 QNLTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLS 43 (147)
T ss_dssp -CCCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHTTCC
T ss_pred CcCCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHhCCC
Confidence 468999999999999763 46788888888888887754
No 200
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}
Probab=52.84 E-value=4 Score=29.53 Aligned_cols=40 Identities=8% Similarity=0.256 Sum_probs=34.7
Q ss_pred CCceeehhhhhhcccccCCCCeEEEEecCCCCCccceecc
Q 024859 152 DGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNI 191 (261)
Q Consensus 152 D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv 191 (261)
+-.|+-|.-.|++|+-..|..+++|+..|+.-++..|=..
T Consensus 8 ~pe~~~VeRIi~~r~~~~g~~eYLVKWkgl~y~e~TWE~~ 47 (64)
T 2ee1_A 8 KPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESE 47 (64)
T ss_dssp CCSSCCCCCCCEEEECTTCCEEEEECCTTSCTTTCEEEET
T ss_pred CCCcEEEEEEEEEEecCCCCEEEEEEEcCCCcccCcccCC
Confidence 3468889999999987888899999999999999988654
No 201
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=52.68 E-value=12 Score=27.84 Aligned_cols=38 Identities=5% Similarity=0.116 Sum_probs=28.7
Q ss_pred cccCHHHHHHHHHHHHh-----ccCCCCCHHHHHHHHHHhCCC
Q 024859 12 FRFNPAEVTEMEGILQE-----HHNAMPSREILVALAEKFSES 49 (261)
Q Consensus 12 t~FT~~Ql~eLEk~F~~-----~~n~yp~~~~rq~LA~~f~lS 49 (261)
+.||+.|+.+|.++|.. .++.+++..+...+-..++..
T Consensus 1 ~~ls~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~~g~~ 43 (156)
T 1wdc_C 1 PKLSQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGIN 43 (156)
T ss_dssp --CCHHHHHHHHHHHHHHHHHTCSSSCEEGGGHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHHccCCCCCCCCcHHHHHHHHHHcCCC
Confidence 35899999999999975 456788887777777777754
No 202
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=52.50 E-value=17 Score=27.12 Aligned_cols=48 Identities=10% Similarity=0.202 Sum_probs=34.8
Q ss_pred ccCHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhh
Q 024859 13 RFNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (261)
Q Consensus 13 ~FT~~Ql~eLEk~F~~---~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQ 68 (261)
.|++.++.+|+++|.. .++.+++..+...+...++.. ++..++...|+
T Consensus 20 ~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~--------~~~~~~~~~~~ 70 (166)
T 2aao_A 20 SLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGAN--------LKESEILDLMQ 70 (166)
T ss_dssp HSCHHHHHHHHHHHHHHCTTCCSSBCHHHHHHHGGGGTCC--------CCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHhCCC--------CCHHHHHHHHH
Confidence 5899999999999975 346788888877777777654 34555665554
No 203
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=52.08 E-value=8.5 Score=28.84 Aligned_cols=48 Identities=10% Similarity=0.062 Sum_probs=35.4
Q ss_pred ccCHHHHHHHHHHHHhc-----cCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhh
Q 024859 13 RFNPAEVTEMEGILQEH-----HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (261)
Q Consensus 13 ~FT~~Ql~eLEk~F~~~-----~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQ 68 (261)
.||+.|+.+|.++|... ++.+++..+...+-..++.. ++..+|+..|+
T Consensus 2 ~ls~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~lg~~--------~~~~~~~~l~~ 54 (159)
T 2ovk_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMN--------PTEAQVHQHGG 54 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSEEEGGGHHHHHHHTTCC--------CCHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHcCCC--------CCHHHHHHHHH
Confidence 58999999999999764 46778888877777787764 35555655554
No 204
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=51.86 E-value=33 Score=24.77 Aligned_cols=30 Identities=13% Similarity=0.209 Sum_probs=23.5
Q ss_pred cccCCceEEEEeecCccceeeeeEEEeeeeccC
Q 024859 209 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRH 241 (261)
Q Consensus 209 ~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r~~H 241 (261)
.+.+|+-||+--. +-+||-+.|++|...++
T Consensus 3 ~f~~GedVLarws---DG~fYlGtI~~V~~~~~ 32 (58)
T 4hcz_A 3 RLWEGQDVLARWT---DGLLYLGTIKKVDSARE 32 (58)
T ss_dssp SCCTTCEEEEECT---TSCEEEEEEEEEETTTT
T ss_pred ccccCCEEEEEec---CCCEEeEEEEEEecCCC
Confidence 5789999997543 36899999999976654
No 205
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.55 E-value=7.3 Score=28.82 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=24.3
Q ss_pred EEeeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCc
Q 024859 145 FEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEE 185 (261)
Q Consensus 145 fEa~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~ee 185 (261)
-.|+-+ ||.||...+--- ++++.+.|.|.++ +.|
T Consensus 16 clA~ws-Dg~~Y~A~I~~v-----~~~~~~~V~f~Dy-n~e 49 (74)
T 2equ_A 16 VLARWT-DCRYYPAKIEAI-----NKEGTFTVQFYDG-VIR 49 (74)
T ss_dssp EEEECS-SSSEEEEEEEEE-----STTSSEEEEETTS-CEE
T ss_pred EEEECC-CCCEEEEEEEEE-----CCCCEEEEEEecC-CeE
Confidence 357777 999999875431 2336899999998 443
No 206
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=50.99 E-value=14 Score=26.96 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCCC
Q 024859 15 NPAEVTEMEGILQEH---HNAMPSREILVALAEKFSES 49 (261)
Q Consensus 15 T~~Ql~eLEk~F~~~---~n~yp~~~~rq~LA~~f~lS 49 (261)
|++|+.+|.++|... ++.+++..+...+-..++..
T Consensus 1 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~ 38 (142)
T 2bl0_C 1 GDDQVSEFKEAFELFDSERTGFITKEGLQTVLKQFGVR 38 (142)
T ss_dssp CCHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCC
Confidence 467888888888763 45678887777777777754
No 207
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=55.84 E-value=3.3 Score=31.49 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=23.8
Q ss_pred eeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCcc
Q 024859 147 AKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEED 186 (261)
Q Consensus 147 a~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eed 186 (261)
||-+ ||.||...+--- .++..+.|.|.+ |+.|.
T Consensus 15 Akws-Dg~wY~A~I~~v-----~~~~~y~V~F~D-Gn~E~ 47 (81)
T 2ldm_A 15 ASWS-DSRFYPAKVTAV-----NKDGTYTVKFYD-GVVQT 47 (81)
Confidence 4555 999999885542 134589999999 87763
No 208
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=49.60 E-value=21 Score=28.28 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=40.1
Q ss_pred ccccCHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhc
Q 024859 11 AFRFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQN 69 (261)
Q Consensus 11 Rt~FT~~Ql~eLEk~F~~~---~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQN 69 (261)
...||+.|+.+|.++|... ++.+++..+...+-..++.. ++..+|...|+.
T Consensus 48 ~~~ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~lg~~--------~~~~~~~~l~~~ 101 (196)
T 3dtp_E 48 FAMFTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRL--------CTEQELDSMVAE 101 (196)
T ss_dssp SCSSCTTTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHTTSCC--------CCHHHHHHHHTT
T ss_pred hhhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCC--------CCHHHHHHHHHH
Confidence 3469999999999999863 46799999988888888765 567777766654
No 209
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=47.91 E-value=23 Score=24.31 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=32.2
Q ss_pred cCHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhh
Q 024859 14 FNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (261)
Q Consensus 14 FT~~Ql~eLEk~F~~---~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQ 68 (261)
.+++++.+|.++|.. .++.+++..+...+...++.. ++..+|..+|+
T Consensus 3 ~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~--------~~~~~~~~l~~ 52 (92)
T 2kn2_A 3 MDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEK--------LTDEEVEQMIK 52 (92)
T ss_dssp CCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCC--------CCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCCC--------CCHHHHHHHHH
Confidence 345677777877764 446788888888888887743 45566666654
No 210
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=47.60 E-value=13 Score=27.54 Aligned_cols=38 Identities=8% Similarity=0.058 Sum_probs=28.2
Q ss_pred cccCHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCCC
Q 024859 12 FRFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSES 49 (261)
Q Consensus 12 t~FT~~Ql~eLEk~F~~~---~n~yp~~~~rq~LA~~f~lS 49 (261)
..||+.|+.+|+++|... ++.+++..+...+...++..
T Consensus 12 ~~ls~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~ 52 (162)
T 1top_A 12 AFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQN 52 (162)
T ss_dssp HHSCHHHHHHHHHHHHTTTCSCSSEEEGGGHHHHHHHTTCC
T ss_pred hhcCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCC
Confidence 469999999999999764 34667777766666666643
No 211
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A*
Probab=47.07 E-value=11 Score=33.96 Aligned_cols=47 Identities=21% Similarity=0.324 Sum_probs=38.9
Q ss_pred CcceEEeeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 141 TFMEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 141 ~~~efEa~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
-.|.+||-..++-..+=|++...- -+..|+|+|.|...+.|.|++..
T Consensus 146 vGMKLEavD~~np~~icvATV~~v-----~g~rl~v~fDGw~~~~D~W~~~~ 192 (265)
T 2r58_A 146 VGQKLEAVDKKNPQLICCATVDAI-----KDDQIHVTFDGWRGAFDYWCNYR 192 (265)
T ss_dssp TTCEEEEECTTSTTCEEEEEEEEE-----ETTEEEEEETTSCGGGCEEEETT
T ss_pred cCcEEEeccCCCCCCEEEEEEEEe-----cCCEEEEEeCCCCCcCCEEEECC
Confidence 457899999999888888876644 23789999999999999999964
No 212
>1qp6_A Protein (alpha2D); de novo design, protein design, protein folding, bisecting U motif, four-helix bundle, helix-turn-helix, de novo protein; NMR {Synthetic} SCOP: k.16.1.1
Probab=46.87 E-value=7.8 Score=25.03 Aligned_cols=29 Identities=34% Similarity=0.407 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHhC
Q 024859 18 EVTEMEGILQEHHNAMPSREILVALAEKFS 47 (261)
Q Consensus 18 Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~ 47 (261)
|+.+||+.|++. -+-|-+-+.++|-.+|.
T Consensus 2 eveelekkfkel-wkgprrgeieelhkkfh 30 (35)
T 1qp6_A 2 EVEELEKKFKEL-WKGPRRGEIEELHKKFH 30 (35)
T ss_dssp CSHHHHHHHHHH-HSSSCSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hcCCccchHHHHHHHHH
Confidence 478999999997 46788889999988885
No 213
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=45.57 E-value=22 Score=26.97 Aligned_cols=38 Identities=5% Similarity=0.128 Sum_probs=27.8
Q ss_pred cccCHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCCC
Q 024859 12 FRFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSES 49 (261)
Q Consensus 12 t~FT~~Ql~eLEk~F~~~---~n~yp~~~~rq~LA~~f~lS 49 (261)
..||+.|+.+|.++|... ++.+++..+...+...++..
T Consensus 3 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~ 43 (179)
T 2f2o_A 3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN 43 (179)
T ss_dssp ---CCSHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTTCC
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCC
Confidence 358889999999999763 45688888888877777754
No 214
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A*
Probab=45.48 E-value=9.9 Score=34.26 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=65.2
Q ss_pred cceEEeeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCccceeccccc---------------------------
Q 024859 142 FMEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRH--------------------------- 194 (261)
Q Consensus 142 ~~efEa~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~~~--------------------------- 194 (261)
.|-+||...++-.-+=|++...- -| ..++|||.|+.+..|-|+++...
T Consensus 38 GMKLEavDp~~~~~icvATV~~v----~g-~~l~l~~DG~d~~~DfW~~~~S~~I~PvGwc~~~g~~L~pP~g~~~~~f~ 112 (265)
T 2r58_A 38 GMKLEALDPRNVTSTCIATVVGV----LG-SRLRLRLDGSDSQNDFWRLVDSTEIHAIGHCEKNGGMLQPPLGFCMNASS 112 (265)
T ss_dssp TCEEEEEETTEEEEEEEEEEEEE----ET-TEEEEEETTSCSSCCEEEETTCTTEECTTHHHHTTCCCCCCTTCSSCGGG
T ss_pred CCEeEEecCCCCCCEEEEEEEEE----eC-CEEEEEeCCCCCcCCEeEeCCCCCeeccccHHhcCCcccCccccccCcCC
Confidence 47899988888766666666543 24 58999999999999999985311
Q ss_pred ----cc-----cccccCcc-------cccccccCCceEEEEeecCccceeeeeEEEeeeeccCCCCcceeEEEEEEcc
Q 024859 195 ----VR-----QRSLPCEA-------SECVAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDH 256 (261)
Q Consensus 195 ----vR-----~rS~ple~-------~eC~~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r~~Hd~~~C~C~F~Vr~~h 256 (261)
++ .+.+|-+. ..-...++|-.+-+--. .+..+.+=|.|.+|.- =+++|+||.
T Consensus 113 W~~yL~ktl~ga~~aP~~lF~~~~~~~~~~~F~vGMKLEavD~-~np~~icvATV~~v~g---------~rl~v~fDG 180 (265)
T 2r58_A 113 WPGYLCKILNNAMVAPEEIFQPEPPEPEENLFKVGQKLEAVDK-KNPQLICCATVDAIKD---------DQIHVTFDG 180 (265)
T ss_dssp HHHHHHHHHTTCCBCCGGGSCCCCCCCSSCCCCTTCEEEEECT-TSTTCEEEEEEEEEET---------TEEEEEETT
T ss_pred HHHHHHHhhcCCccCCHHHhcccCCCCcccccccCcEEEeccC-CCCCCEEEEEEEEecC---------CEEEEEeCC
Confidence 11 12222221 12345777777766443 3457889999999962 247777763
No 215
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Probab=44.21 E-value=19 Score=28.34 Aligned_cols=48 Identities=15% Similarity=0.023 Sum_probs=32.6
Q ss_pred CCCCCCC-----CCCccccCHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHhCC
Q 024859 1 MGRPPSN-----GGPAFRFNPAEVTEMEGILQEH-HNAMPSREILVALAEKFSE 48 (261)
Q Consensus 1 mgrPp~~-----~~pRt~FT~~Ql~eLEk~F~~~-~n~yp~~~~rq~LA~~f~l 48 (261)
||...+. =...|.|+..||.++=+.|... ++.+++..+...+-..++.
T Consensus 1 MG~~~s~~~~~~l~~~t~~~~~el~~~f~~~D~~~~~G~i~~~e~~~~l~~~~~ 54 (204)
T 1jba_A 1 MGQQFSWEEAEENGAVGAADAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDN 54 (204)
T ss_dssp -CCCSSCHHHHHSSSCCHHHHHHHHHHHHHHHSSSTTCCEEHHHHHHHHHCCSS
T ss_pred CCcccccccHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHhcC
Confidence 7877763 2344567777776666666665 5789999888888777764
No 216
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Probab=43.23 E-value=14 Score=32.77 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=39.0
Q ss_pred CcceEEeeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 141 TFMEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 141 ~~~efEa~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
-.|-+||.-.++-..+-|++...- -+..|+|+|-|....-|.|++..
T Consensus 174 ~GmKLEavD~~~p~~icvATV~~v-----~g~rl~v~fDgw~~~~D~W~~~d 220 (243)
T 2biv_A 174 VGMKLEAIDKKNPYLICPATIGDV-----KGDEVHITFDGWSGAFDYWCKYD 220 (243)
T ss_dssp TTCEEEEECTTSTTCEEEEEEEEE-----ETTEEEEEETTSCGGGCEEEETT
T ss_pred CCCEEEEEccCCCCeEEEEEEEEe-----cCCEEEEEECCCCCcCCEEEeCC
Confidence 458899999999888888876654 23789999999999999999875
No 217
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=42.06 E-value=53 Score=23.99 Aligned_cols=44 Identities=14% Similarity=0.288 Sum_probs=34.6
Q ss_pred CCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhh
Q 024859 9 GPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (261)
Q Consensus 9 ~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQ 68 (261)
-.+-.||++|-+.|-++++..++. =..||..||-| +.||++-|.
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G~k------W~~IA~~lgRt----------~~q~knRw~ 64 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHGND------WATIGAALGRS----------ASSVKDRCR 64 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHSSC------HHHHHHHHTSC----------HHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCC------HHHHHHHhCCC----------HHHHHHHHH
Confidence 345689999999999999997654 67889999765 499996543
No 218
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=41.35 E-value=31 Score=25.29 Aligned_cols=48 Identities=19% Similarity=0.389 Sum_probs=32.8
Q ss_pred cccCHHHHHHHHHHHHhccCCCCCH-HHHHHHHHHhCCCccccCCcccccchhhhhhhc
Q 024859 12 FRFNPAEVTEMEGILQEHHNAMPSR-EILVALAEKFSESPERKGKIMVQMKQVWNWFQN 69 (261)
Q Consensus 12 t~FT~~Ql~eLEk~F~~~~n~yp~~-~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQN 69 (261)
..||+++...+=+.+.+.+..+.+. .-..++|..||+++ .+|..|-+.
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~----------~tl~~W~~~ 53 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP----------ETLRVWVRQ 53 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCH----------HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCH----------HHHHHHHHH
Confidence 4689988876655554421123332 46789999999775 889999753
No 219
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=39.82 E-value=37 Score=25.32 Aligned_cols=39 Identities=5% Similarity=0.021 Sum_probs=27.9
Q ss_pred ccccCHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCCC
Q 024859 11 AFRFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSES 49 (261)
Q Consensus 11 Rt~FT~~Ql~eLEk~F~~~---~n~yp~~~~rq~LA~~f~lS 49 (261)
-..+|.+|+.+|.++|... ++.+++.++...+-...+++
T Consensus 5 ~w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~ 46 (111)
T 2kgr_A 5 EWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLP 46 (111)
T ss_dssp CSSSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCC
Confidence 3458899999999999753 46778887776666544443
No 220
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=39.34 E-value=42 Score=27.40 Aligned_cols=36 Identities=11% Similarity=0.169 Sum_probs=29.4
Q ss_pred cccCHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHhC
Q 024859 12 FRFNPAEVTEMEGILQEH-HNAMPSREILVALAEKFS 47 (261)
Q Consensus 12 t~FT~~Ql~eLEk~F~~~-~n~yp~~~~rq~LA~~f~ 47 (261)
+.||..||.+|-+.|... ++.+++..+...+-..++
T Consensus 46 ~~~s~~ei~~l~~~Fd~~d~~G~I~~~E~~~~l~~l~ 82 (224)
T 1s1e_A 46 TNFTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFF 82 (224)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTSCBCHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhc
Confidence 469999999999999885 678899888777776665
No 221
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=39.01 E-value=35 Score=27.12 Aligned_cols=63 Identities=3% Similarity=-0.040 Sum_probs=42.6
Q ss_pred CccccCHHHHHHHHHHHHhc--cCCCCCHHHHHHHHHHhCCCc------------cccCCcccccchhhhhhhcchh
Q 024859 10 PAFRFNPAEVTEMEGILQEH--HNAMPSREILVALAEKFSESP------------ERKGKIMVQMKQVWNWFQNRRY 72 (261)
Q Consensus 10 pRt~FT~~Ql~eLEk~F~~~--~n~yp~~~~rq~LA~~f~lS~------------~RaGK~~lt~~QVk~WFQNRR~ 72 (261)
..-..|++|.++++++|... ++.+++.++...+=.+.+++. ++.|++...|=-+--|+-+++.
T Consensus 23 ~~W~it~ee~~~y~~iF~~lD~~dG~Isg~elr~~~~~sgLp~~~L~~Iw~laD~d~dG~Ld~~EF~~aM~Li~~~~ 99 (121)
T 3fia_A 23 DTWAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKLIKLKL 99 (121)
T ss_dssp TTSCCCHHHHHHHHHHHHHTCCBTTBEEHHHHHHHHGGGCCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCeECHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHHHH
Confidence 34568999999999999864 467788877777666677654 3345555554445566666543
No 222
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}
Probab=38.75 E-value=2.2 Score=34.51 Aligned_cols=49 Identities=12% Similarity=0.015 Sum_probs=18.4
Q ss_pred CCCCCCCCCCccccCHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHhCCC
Q 024859 1 MGRPPSNGGPAFRFNPAEVTEMEGILQEH-HNAMPSREILVALAEKFSES 49 (261)
Q Consensus 1 mgrPp~~~~pRt~FT~~Ql~eLEk~F~~~-~n~yp~~~~rq~LA~~f~lS 49 (261)
||--.|.....|.||.+||.++=+.|... ++.+++..+...+-..++.+
T Consensus 3 MG~~~s~~~~~t~ls~~ei~~~f~~fD~~~~~G~is~~El~~~l~~~~~~ 52 (211)
T 2ggz_A 3 MGNGKSIAGDQKAVPTQETHVWYRTFMMEYPSGLQTLHEFKTLLGLQGLN 52 (211)
T ss_dssp ---------------------CCCSHHHHCTTSEEEHHHHHHHTTCCSCC
T ss_pred CCcccCcccccCCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHhCCC
Confidence 78777766677889999987776677654 56788887776665555543
No 223
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=38.39 E-value=39 Score=24.89 Aligned_cols=32 Identities=9% Similarity=0.115 Sum_probs=25.7
Q ss_pred cccccccCCceEEEEeecCccceeeeeEEEeeeec
Q 024859 205 SECVAVLPGDLILCFQEGKDQALYFDAHVLDAQRR 239 (261)
Q Consensus 205 ~eC~~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r~ 239 (261)
.+.....+||.||+-- .+-+||-|.|+.|...
T Consensus 9 ~~~~~f~vGddVLA~w---tDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 9 KPACKFEEGQDVLARW---SDGLFYLGTIKKINIL 40 (66)
T ss_dssp CCCCCSCTTCEEEEEC---TTSCEEEEEEEEEETT
T ss_pred cccccccCCCEEEEEE---ccCcEEEeEEEEEccC
Confidence 3456789999999765 3579999999999764
No 224
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=38.17 E-value=62 Score=23.89 Aligned_cols=42 Identities=17% Similarity=0.375 Sum_probs=31.2
Q ss_pred cccCCceEEEEeecCccceeeeeEEEeeeeccCCCCcceeEEEEEEccCCC
Q 024859 209 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQS 259 (261)
Q Consensus 209 ~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r~~Hd~~~C~C~F~Vr~~hd~s 259 (261)
.-..||.|++== .+ +.+||-|+|.+|.-..+ ..+|.|-.|.+
T Consensus 9 ~~~vgd~VmaRW-~G-d~~yYparI~Si~s~~~-------~Y~V~fKdgT~ 50 (66)
T 2l8d_A 9 KYADGEVVMGRW-PG-SVLYYEVQVTSYDDASH-------LYTVKYKDGTE 50 (66)
T ss_dssp SSCSSCEEEEEC-TT-SSCEEEEEEEEEETTTT-------EEEEEETTSCE
T ss_pred EeecCCEEEEEc-CC-CccceEEEEEEeccCCc-------eEEEEecCCCE
Confidence 345799999887 55 59999999999993333 57777776443
No 225
>2jpf_A Hypothetical protein; all alpha helical protein, type III secretion effector protein, structural genomics; NMR {Bordetella parapertussis}
Probab=36.97 E-value=10 Score=30.31 Aligned_cols=18 Identities=39% Similarity=0.591 Sum_probs=15.5
Q ss_pred cccCCcccccchhhhhhhc
Q 024859 51 ERKGKIMVQMKQVWNWFQN 69 (261)
Q Consensus 51 ~RaGK~~lt~~QVk~WFQN 69 (261)
-|+|+++|+- .||+|.||
T Consensus 43 lragsmalqg-dvkvwmqn 60 (127)
T 2jpf_A 43 LRAGSMALQG-DVKVWMQN 60 (127)
T ss_dssp CSSSSSSSCH-HHHHHHHH
T ss_pred hhhhhhhhcc-cHHHHHHH
Confidence 4889999984 59999999
No 226
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=36.85 E-value=15 Score=29.47 Aligned_cols=21 Identities=29% Similarity=0.662 Sum_probs=18.8
Q ss_pred CeEEEEecCCCCCccceeccc
Q 024859 172 PEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 172 ~ev~Vrf~gFg~eedewvnv~ 192 (261)
++++|+|.|+...=||||..-
T Consensus 59 ~~Y~VHY~GWn~~WDEWV~~d 79 (110)
T 3oa6_A 59 PEYLIHFNGWNRSWDRWAAED 79 (110)
T ss_dssp EEEEEEETTSCGGGCEEEEGG
T ss_pred cEEEEEECCcCcchhhccChh
Confidence 479999999999999999854
No 227
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=36.74 E-value=51 Score=23.66 Aligned_cols=44 Identities=9% Similarity=0.190 Sum_probs=30.3
Q ss_pred ccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhc
Q 024859 11 AFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQN 69 (261)
Q Consensus 11 Rt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQN 69 (261)
|..||+++..+.=+.+.... . ....++|..||+|+ ..|..|.+.
T Consensus 3 r~~ys~e~k~~~v~~~~~~~-g----~s~~~ia~~~gIs~----------~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSD-G----ASLQQIANDLGINR----------VTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGG-G----SCHHHHHHHHTSCH----------HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-C----ChHHHHHHHHCcCH----------HHHHHHHHH
Confidence 45789988776655554310 1 23679999999775 889999753
No 228
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=36.72 E-value=58 Score=22.66 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=30.1
Q ss_pred CCCCCCCCCCccccCHHHH-HHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcch
Q 024859 1 MGRPPSNGGPAFRFNPAEV-TEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRR 71 (261)
Q Consensus 1 mgrPp~~~~pRt~FT~~Ql-~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR 71 (261)
||-+|-.-.+........+ ..|..+..+ .=++ ..+||+.+|+|. ..|..|..+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~~---~gls---q~elA~~~gis~----------~~is~~e~g~~ 56 (83)
T 2a6c_A 1 MGSDKIHHHHHHMKMRSQLLIVLQEHLRN---SGLT---QFKAAELLGVTQ----------PRVSDLMRGKI 56 (83)
T ss_dssp -----CCCCCSSHHHHHHHHHHHHHHHHT---TTCC---HHHHHHHHTSCH----------HHHHHHHTTCG
T ss_pred CcccccccCcCCccccHHHHHHHHHHHHH---cCCC---HHHHHHHHCcCH----------HHHHHHHcCCC
Confidence 6666655444443333333 334444444 2233 578999999764 78999999875
No 229
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=36.53 E-value=52 Score=23.83 Aligned_cols=61 Identities=10% Similarity=0.105 Sum_probs=44.7
Q ss_pred CCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhHhhh
Q 024859 7 NGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 77 (261)
Q Consensus 7 ~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~K~k 77 (261)
.+++|.+.|++.-...-.++++.+ ++...=..|.+..|.. .||-.||++=.|.=|.+.+|.
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG---~~~AtPk~Il~~M~v~-------gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLG---VERAVPKKILDLMNVD-------KLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHC---TTTCCHHHHHHHHCCT-------TCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhC---CCCCCcHHHHHHcCCC-------CCCHHHHHHHHHHHHHHHHcc
Confidence 478999999998888877777763 3433334455556653 388899999999988887653
No 230
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*
Probab=36.37 E-value=25 Score=29.00 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.0
Q ss_pred cccCCceEEEEeecCccceeeeeEEEeee
Q 024859 209 AVLPGDLILCFQEGKDQALYFDAHVLDAQ 237 (261)
Q Consensus 209 ~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~ 237 (261)
...+|..|+||+.+ +-|.|.|++|.
T Consensus 7 ~f~~gE~VlcfHg~----~~YeAKIl~i~ 31 (130)
T 3e9g_A 7 EFALGGRCLAFHGP----LMYEAKILKIW 31 (130)
T ss_dssp CCCTTCEEEEEETT----EEEEEEEEEEE
T ss_pred cccCCCEEEEEeCC----cceeeEEEEee
Confidence 46789999999974 36999999993
No 231
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=36.05 E-value=11 Score=28.62 Aligned_cols=43 Identities=9% Similarity=0.018 Sum_probs=31.5
Q ss_pred CCCCccccCHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCCC
Q 024859 7 NGGPAFRFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSES 49 (261)
Q Consensus 7 ~~~pRt~FT~~Ql~eLEk~F~~~---~n~yp~~~~rq~LA~~f~lS 49 (261)
.......+|++|+.++.++|... ++.+++.++...+-.+++++
T Consensus 9 ~~~~~~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~ 54 (110)
T 1iq3_A 9 YPDEPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLS 54 (110)
T ss_dssp CCCSSCCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCS
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCC
Confidence 34455678999999999999863 45788888777766555544
No 232
>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}
Probab=36.05 E-value=38 Score=27.62 Aligned_cols=48 Identities=2% Similarity=-0.098 Sum_probs=33.8
Q ss_pred ccCHHHHHHHHHHHHhc---cCCCCCHHHHHH-HHHHhCCCccccCCcccccchhhhhhh
Q 024859 13 RFNPAEVTEMEGILQEH---HNAMPSREILVA-LAEKFSESPERKGKIMVQMKQVWNWFQ 68 (261)
Q Consensus 13 ~FT~~Ql~eLEk~F~~~---~n~yp~~~~rq~-LA~~f~lS~~RaGK~~lt~~QVk~WFQ 68 (261)
.+|+.|+.+|.++|... ++.+++..+... |...++.. ++..+++..|+
T Consensus 44 ~ls~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~lg~~--------~~~~~~~~~~~ 95 (226)
T 2lvv_A 44 DKDAESKSRRIELFKQFDTNGTGKLGFREVLDGCYGILKLD--------EFTTHLPDIVQ 95 (226)
T ss_dssp SCCHHHHHHHHHHHHHHGGGSCSCBCSHHHHHHHHHTTCCT--------TTSSSCHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHhCCC--------CCHHHHHHHHH
Confidence 47899999999998653 467888887776 77766754 34455555443
No 233
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=35.82 E-value=45 Score=26.49 Aligned_cols=48 Identities=8% Similarity=0.106 Sum_probs=33.8
Q ss_pred ccCHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhh
Q 024859 13 RFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (261)
Q Consensus 13 ~FT~~Ql~eLEk~F~~~---~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQ 68 (261)
.++..|+.+|.++|... ++.+++..+...+-..++.. +++.+|+.-|+
T Consensus 50 ~l~~~e~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~--------~~~~~~~~l~~ 100 (197)
T 3pm8_A 50 HLCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQ--------KIPPDIHQVLR 100 (197)
T ss_dssp HCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHC------------CHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCC--------CCHHHHHHHHH
Confidence 47889999999999763 46788888888777777653 45666766665
No 234
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Probab=35.22 E-value=25 Score=23.53 Aligned_cols=44 Identities=9% Similarity=0.058 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhh
Q 024859 16 PAEVTEMEGILQE---HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWN 65 (261)
Q Consensus 16 ~~Ql~eLEk~F~~---~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~ 65 (261)
+++..+|+.+|.. .++.+++..+...+...++. ...++..+++.
T Consensus 3 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~------~~~~~~~~~~~ 49 (83)
T 1yx7_A 3 CKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDA------YKALSKDKVKE 49 (83)
T ss_dssp SCSCTHHHHHHHHHSSSCSSSCSHHHHHHHHHHHTT------CTTTTTTTTHH
T ss_pred ccHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHcc------ccCCCHHHHHH
Confidence 3455667777764 45689999998888888872 12356778887
No 235
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=34.96 E-value=32 Score=26.04 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=20.9
Q ss_pred cccCCceEEEEeecCccceeeeeEEEeeee
Q 024859 209 AVLPGDLILCFQEGKDQALYFDAHVLDAQR 238 (261)
Q Consensus 209 ~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r 238 (261)
.+++|+++++... ++..||-|.|++|..
T Consensus 32 ~~~~G~~c~a~~~--~d~~wyRA~V~~~~~ 59 (110)
T 2diq_A 32 TVHVGDIVAAPLP--TNGSWYRARVLGTLE 59 (110)
T ss_dssp CCCTTCEEEECCT--TTCSCEEEEECCCCS
T ss_pred CCCCCCEEEEEEC--CCCeEEEEEEEEECC
Confidence 5789998876432 235799999999864
No 236
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=34.92 E-value=23 Score=29.85 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=17.9
Q ss_pred CCCCHHHHHHHHHHhCCCc
Q 024859 32 AMPSREILVALAEKFSESP 50 (261)
Q Consensus 32 ~yp~~~~rq~LA~~f~lS~ 50 (261)
.|++.+..+.+|+.|++++
T Consensus 39 G~l~~~~~~~iA~~l~l~~ 57 (181)
T 3i9v_2 39 GWIRPERIEEIARLVGTTP 57 (181)
T ss_dssp SSCCHHHHHHHHHHHTSCH
T ss_pred CCCCHHHHHHHHHHhCcCH
Confidence 7999999999999999876
No 237
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=34.81 E-value=13 Score=23.17 Aligned_cols=13 Identities=38% Similarity=0.741 Sum_probs=11.2
Q ss_pred cCCCceeehhhhh
Q 024859 150 ARDGAWYDVSAFL 162 (261)
Q Consensus 150 ~~D~AWydv~~fl 162 (261)
-+||||-...+||
T Consensus 15 r~dg~WV~l~t~l 27 (27)
T 2ww6_A 15 RKFGEWVLLSTFL 27 (27)
T ss_dssp EETTEEEEGGGGC
T ss_pred EEcCeEEEccccC
Confidence 5699999999886
No 238
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}
Probab=34.64 E-value=58 Score=24.92 Aligned_cols=35 Identities=6% Similarity=0.140 Sum_probs=29.0
Q ss_pred cccCHHHHHHHHHHHHhc----cCCCCCHHHHHHHHHHh
Q 024859 12 FRFNPAEVTEMEGILQEH----HNAMPSREILVALAEKF 46 (261)
Q Consensus 12 t~FT~~Ql~eLEk~F~~~----~n~yp~~~~rq~LA~~f 46 (261)
..+|+.++.+|+++|... ++.+++..+...+...+
T Consensus 4 ~~ls~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~ 42 (191)
T 2ccm_A 4 HQLSDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKI 42 (191)
T ss_dssp CCCCHHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHhccccccCCCCCeeeHHHHHHHHHHH
Confidence 357899999999999765 56889998888888877
No 239
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=34.52 E-value=7.4 Score=26.95 Aligned_cols=34 Identities=15% Similarity=0.314 Sum_probs=27.4
Q ss_pred ehhhhhhcccccCCCC-eEEEEecCCCCCccceeccc
Q 024859 157 DVSAFLAQRNFDTADP-EVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 157 dv~~fl~~R~l~~ge~-ev~Vrf~gFg~eedewvnv~ 192 (261)
.|...|.+|+...|.. +++|+..|| ++..|-...
T Consensus 2 ~VE~Ild~r~~~~g~~~~YlVKWkgy--~~~TWEp~~ 36 (54)
T 1x3p_A 2 VAESVIGKRVGDDGKTIEYLVKWTDM--SDATWEPQD 36 (54)
T ss_dssp CSSCCCCBSSCSSSCCCCBCCCCSSS--SSCSCSTTC
T ss_pred eEEEEEEEEEcCCCcEEEEEEEECCC--CcCCccchH
Confidence 4566788888766888 999999999 678898765
No 240
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=33.81 E-value=62 Score=24.67 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=30.1
Q ss_pred cccc-CHHHHHHHHHHHHh---ccCCCCCHHHHH-----HHHHHhCCCc
Q 024859 11 AFRF-NPAEVTEMEGILQE---HHNAMPSREILV-----ALAEKFSESP 50 (261)
Q Consensus 11 Rt~F-T~~Ql~eLEk~F~~---~~n~yp~~~~rq-----~LA~~f~lS~ 50 (261)
.+.| |+.|+.+|+++|.. .++.+++..+.. .+...++..+
T Consensus 10 ~~~~~s~~~~~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l~~~g~~~ 58 (195)
T 1qv0_A 10 KTDFDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATP 58 (195)
T ss_dssp SCCTTCHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTHHHHTTCCH
T ss_pred CcccCCHHHHHHHHHHHhHcCCCCCCcCcHHHHHHHHHHHHHHHcCCCc
Confidence 4455 99999999999975 357889998887 5556667643
No 241
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=33.40 E-value=27 Score=25.89 Aligned_cols=35 Identities=6% Similarity=-0.016 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCCC
Q 024859 15 NPAEVTEMEGILQE---HHNAMPSREILVALAEKFSES 49 (261)
Q Consensus 15 T~~Ql~eLEk~F~~---~~n~yp~~~~rq~LA~~f~lS 49 (261)
|+.|+.+|.++|.. .++.+++..+...+-..++..
T Consensus 1 ~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~ 38 (143)
T 2obh_A 1 TEEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFE 38 (143)
T ss_dssp CHHHHHHHHHHHHTTCTTCCSEEEGGGHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCC
Confidence 56788888888864 234567766666666666653
No 242
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=33.31 E-value=25 Score=27.73 Aligned_cols=22 Identities=36% Similarity=0.735 Sum_probs=14.8
Q ss_pred hhhhhhhcchhhHhhhccCCCC
Q 024859 62 QVWNWFQNRRYAIRAKSIKSPG 83 (261)
Q Consensus 62 QVk~WFQNRR~k~K~k~~~~p~ 83 (261)
-||.||.||-+.+-...-..|+
T Consensus 18 liwlwfrnrpaaqvasnwegpp 39 (117)
T 1w8x_P 18 LIWLWFRNRPAAQVASNWEGPP 39 (117)
T ss_dssp HHHHHHHHTTCSCSSCTTCCCC
T ss_pred HHHHHHccChHHHHhhcCCCCC
Confidence 3789999997766554444443
No 243
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=33.24 E-value=55 Score=24.59 Aligned_cols=39 Identities=10% Similarity=0.156 Sum_probs=30.4
Q ss_pred cccCHHHHHHHHHHHHhc--cCCCCCHHHHHHHHHHhCCCc
Q 024859 12 FRFNPAEVTEMEGILQEH--HNAMPSREILVALAEKFSESP 50 (261)
Q Consensus 12 t~FT~~Ql~eLEk~F~~~--~n~yp~~~~rq~LA~~f~lS~ 50 (261)
..+|++|++++.++|... ++.+++.++...+-.+++++.
T Consensus 7 w~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~gl~~ 47 (106)
T 1eh2_A 7 WAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPV 47 (106)
T ss_dssp CSSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCCH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcCCCH
Confidence 347899999999999753 568888888777777777654
No 244
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=31.22 E-value=53 Score=25.04 Aligned_cols=36 Identities=11% Similarity=0.059 Sum_probs=29.5
Q ss_pred ccccCHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHh
Q 024859 11 AFRFNPAEVTEMEGILQEH-HNAMPSREILVALAEKF 46 (261)
Q Consensus 11 Rt~FT~~Ql~eLEk~F~~~-~n~yp~~~~rq~LA~~f 46 (261)
.+.|+..||.++=+.|... ++.+++..+...+-..+
T Consensus 19 ~~~~~~~~i~~~f~~fd~~~~~G~i~~~e~~~~l~~~ 55 (190)
T 1g8i_A 19 KTYFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQF 55 (190)
T ss_dssp TSSSCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHh
Confidence 4578999999999999876 67889998888777776
No 245
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=31.15 E-value=31 Score=28.48 Aligned_cols=45 Identities=7% Similarity=0.199 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhh
Q 024859 15 NPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYA 73 (261)
Q Consensus 15 T~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k 73 (261)
.+++......+|+...+. .-..+||+.||.|. ..|..|..|..+.
T Consensus 158 ~~~~a~iv~~i~~~~~~G----~s~~~Ia~~l~is~----------~tv~r~l~~~~~~ 202 (209)
T 2r0q_C 158 DPQKRVIYHRVVEMLEEG----QAISKIAKEVNITR----------QTVYRIKHDNGLS 202 (209)
T ss_dssp SHHHHHHHHHHHHHHHTT----CCHHHHHHHHTCCH----------HHHHHHHTTCC--
T ss_pred chHHHHHHHHHHHHHHcC----CCHHHHHHHHCcCH----------HHHHHHHhccccc
Confidence 445544556666653222 34778999999764 6688888776554
No 246
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5
Probab=30.00 E-value=61 Score=24.08 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=27.3
Q ss_pred cCHHHHHHHHHHHHhc---cCCCCCHHHHHH----HHHHhCCC
Q 024859 14 FNPAEVTEMEGILQEH---HNAMPSREILVA----LAEKFSES 49 (261)
Q Consensus 14 FT~~Ql~eLEk~F~~~---~n~yp~~~~rq~----LA~~f~lS 49 (261)
.|+.|+.+|+++|... ++.+++..+... +...++..
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~~~~~l~~~g~~ 43 (176)
T 1nya_A 1 TTAIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKD 43 (176)
T ss_dssp CCSHHHHHHHHHHHHCCSSCCSSBCSHHHHHHHHHHHHHTSSC
T ss_pred CcHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHcCCC
Confidence 3678999999999863 357888887777 56677765
No 247
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=29.97 E-value=12 Score=27.99 Aligned_cols=19 Identities=11% Similarity=0.496 Sum_probs=8.5
Q ss_pred cccchhhhhhhcchhhHhh
Q 024859 58 VQMKQVWNWFQNRRYAIRA 76 (261)
Q Consensus 58 lt~~QVk~WFQNRR~k~K~ 76 (261)
+...+|..||++.|...+.
T Consensus 5 ~~~~~~~~W~~~~r~~~~~ 23 (97)
T 1b72_A 5 TPTARTFDWMKVKRNPPKT 23 (97)
T ss_dssp ---CCCCGGGGC-------
T ss_pred CCCcccccccccccCCCCC
Confidence 4568899999999886543
No 248
>2k0m_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodospirillum rubrum atcc 11170}
Probab=29.88 E-value=33 Score=26.92 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=16.9
Q ss_pred EEeeeeccCCCCcceeEEEEEEc
Q 024859 233 VLDAQRRRHDVRGCRCRFLVRYD 255 (261)
Q Consensus 233 V~~i~r~~Hd~~~C~C~F~Vr~~ 255 (261)
|..|+-+.|+. +.||.|+||=|
T Consensus 63 i~~i~V~~h~~-~srCFfvvR~D 84 (104)
T 2k0m_A 63 VRNFEVRSADY-GTQCFWILRTD 84 (104)
T ss_dssp EEEEEEEESSS-SCEEEEEEETT
T ss_pred cceEEEecCCC-CCcEEEEEEeC
Confidence 56677677854 89999999853
No 249
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.92 E-value=14 Score=26.56 Aligned_cols=41 Identities=17% Similarity=0.294 Sum_probs=32.8
Q ss_pred CCceeehhhhhhcccc---cCC--CCeEEEEecCCCCCccceeccc
Q 024859 152 DGAWYDVSAFLAQRNF---DTA--DPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 152 D~AWydv~~fl~~R~l---~~g--e~ev~Vrf~gFg~eedewvnv~ 192 (261)
+-.||.|.-.|++|.. .+| ..+++|+..|++-++--|=...
T Consensus 8 ~pe~~~VErIl~~r~~~~~~~g~~~~eYLVKWkgl~y~e~TWE~~~ 53 (68)
T 2epb_A 8 NPDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEE 53 (68)
T ss_dssp CSSCCCCCEEEEEEEEECSSSCCEEEEEEEECTTSCGGGCCEEETT
T ss_pred CCCceEEeEEEEEEecccccCCCcceEEEEEEcCCChhcCccccch
Confidence 4468999999998864 246 5689999999999999997654
No 250
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=28.68 E-value=2.1e+02 Score=25.21 Aligned_cols=91 Identities=13% Similarity=0.258 Sum_probs=57.3
Q ss_pred CCCceeehhhhhhcccccCCC-CeEEEEecCCCCCccceeccccccccccccCccccc-ccccCCceEEEEeecCcccee
Q 024859 151 RDGAWYDVSAFLAQRNFDTAD-PEVQVRFAGFGAEEDEWVNIKRHVRQRSLPCEASEC-VAVLPGDLILCFQEGKDQALY 228 (261)
Q Consensus 151 ~D~AWydv~~fl~~R~l~~ge-~ev~Vrf~gFg~eedewvnv~~~vR~rS~ple~~eC-~~v~~Gd~vlcf~e~~~~a~y 228 (261)
+++.||-+.+.- +...|. .++.|+|. +..+.-+..+ +| .+.-.-. ..|-.|.+|++..++..+-.|
T Consensus 20 ~~~~W~rg~v~~---I~~~~~g~~YkVkF~---~~g~~ivs~~-hi-----A~~~~p~~~~l~vG~RVVA~~~~~~~~~f 87 (213)
T 3dlm_A 20 RTKTWHKGTLIA---IQTVGPGKKYKVKFD---NKGKSLLSGN-HI-----AYDYHPPADKLYVGSRVVAKYKDGNQVWL 87 (213)
T ss_dssp TTSBEEEEEEEE---EEEETTEEEEEEEES---SSCEEEECGG-GE-----EESSCCCGGGCCTTCEEEEEEECSSCEEE
T ss_pred cCCcEEEEEEEE---EEECCCCeEEEEEEc---CCCCEEeecc-eE-----EEecCCCccEEeEEEEEEEEecCCCCcce
Confidence 678999766322 111222 55888855 4445556654 22 2211111 258899999988887767789
Q ss_pred eeeEEEeeeeccCCCCcceeEEEEEEccCC
Q 024859 229 FDAHVLDAQRRRHDVRGCRCRFLVRYDHDQ 258 (261)
Q Consensus 229 ~DA~V~~i~r~~Hd~~~C~C~F~Vr~~hd~ 258 (261)
|=..|.+.--..+-- ||||=||.+-
T Consensus 88 Y~GiVaE~p~~~N~~-----RyLVFFDDG~ 112 (213)
T 3dlm_A 88 YAGIVAETPNVKNKL-----RFLIFFDDGY 112 (213)
T ss_dssp EEEEEEECCCTTTTS-----CEEEEETTSC
T ss_pred eeeEEEECCccCCCc-----eEEEEEeCCC
Confidence 988888876554333 7999998764
No 251
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=28.54 E-value=60 Score=20.72 Aligned_cols=39 Identities=10% Similarity=0.175 Sum_probs=27.8
Q ss_pred ccC--HHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhh
Q 024859 13 RFN--PAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (261)
Q Consensus 13 ~FT--~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQ 68 (261)
-++ +++..++-.++.+ .+ ...+||+.||+|. .-|..|.+
T Consensus 13 ~l~~~~~~~~~i~~l~~~---g~----s~~eIA~~lgis~----------~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAKM---GY----TVQQIANALGVSE----------RKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHHT---TC----CHHHHHHHHTSCH----------HHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHc---CC----CHHHHHHHHCcCH----------HHHHHHHH
Confidence 567 7777777766544 22 3678999999875 77888874
No 252
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=28.28 E-value=1.7e+02 Score=21.48 Aligned_cols=46 Identities=4% Similarity=0.062 Sum_probs=31.7
Q ss_pred ccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchh
Q 024859 13 RFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRY 72 (261)
Q Consensus 13 ~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~ 72 (261)
.+++++...+.+.... ...+. .+||..||++ ++...|..|+.....
T Consensus 60 ~l~~~~~~~i~~~~~~---~~~s~---~~i~~~lg~~--------~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 60 ALSVRDERNVIRAASN---SCKTA---RDIRNELQLS--------ASKRTILNVIKRSGV 105 (141)
T ss_dssp SSCHHHHHHHHHHHHH---CCCCH---HHHHHHTTCC--------SCHHHHHHHHHHTC-
T ss_pred cCCHHHHHHHHHHHhC---CCCCH---HHHHHHHCCC--------ccHHHHHHHHHHCCC
Confidence 5789998888877332 33443 5788888742 567889999976554
No 253
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}
Probab=27.77 E-value=93 Score=24.98 Aligned_cols=38 Identities=0% Similarity=-0.094 Sum_probs=29.5
Q ss_pred cccCHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHH-hCCC
Q 024859 12 FRFNPAEVTEMEGILQE---HHNAMPSREILVALAEK-FSES 49 (261)
Q Consensus 12 t~FT~~Ql~eLEk~F~~---~~n~yp~~~~rq~LA~~-f~lS 49 (261)
..||+.|+.+|.++|.. .++.+++..+...+-.. ++..
T Consensus 40 ~~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~lg~~ 81 (219)
T 3cs1_A 40 REKTAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLD 81 (219)
T ss_dssp CSSSHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTTCGG
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhCCC
Confidence 46899999999999976 35678999887765555 6754
No 254
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=27.65 E-value=1.1e+02 Score=19.95 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=23.2
Q ss_pred cCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCc
Q 024859 14 FNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESP 50 (261)
Q Consensus 14 FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~ 50 (261)
.+...|..+|+ +...|+.+...+||+.|++++
T Consensus 35 is~~~i~~~e~-----g~~~~~~~~l~~la~~l~v~~ 66 (71)
T 2ewt_A 35 WKAVVVGSYER-----GDRAVTVQRLAELADFYGVPV 66 (71)
T ss_dssp SCHHHHHHHHH-----TCSCCCHHHHHHHHHHHTSCG
T ss_pred CCHHHHHHHHC-----CCCCCCHHHHHHHHHHHCcCH
Confidence 45555555554 246689999999999999874
No 255
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5
Probab=27.63 E-value=45 Score=25.53 Aligned_cols=37 Identities=16% Similarity=0.076 Sum_probs=29.0
Q ss_pred cccCHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHhCC
Q 024859 12 FRFNPAEVTEMEGILQEH-HNAMPSREILVALAEKFSE 48 (261)
Q Consensus 12 t~FT~~Ql~eLEk~F~~~-~n~yp~~~~rq~LA~~f~l 48 (261)
+.||..||.+|=+.|... ++.+++..+...+-..++.
T Consensus 20 ~~~~~~~i~~~f~~fd~~~~~G~i~~~e~~~~l~~~~~ 57 (193)
T 1bjf_A 20 TDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFP 57 (193)
T ss_dssp SSCCHHHHHHHHHHHHHHSTTSEEEHHHHHHHHTTTSS
T ss_pred cCCCHHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHhcC
Confidence 569999999998888876 5788888877777666653
No 256
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=27.56 E-value=19 Score=27.15 Aligned_cols=14 Identities=43% Similarity=0.933 Sum_probs=12.4
Q ss_pred cCCCceeehhhhhh
Q 024859 150 ARDGAWYDVSAFLA 163 (261)
Q Consensus 150 ~~D~AWydv~~fl~ 163 (261)
-+||||-.+.+||+
T Consensus 59 rkDgaWVlL~t~ln 72 (74)
T 1avy_A 59 RKDGEWVLLSTFLS 72 (74)
T ss_dssp EETTEEEEGGGGSS
T ss_pred EecCeeEEeecccc
Confidence 56999999999985
No 257
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*
Probab=27.34 E-value=32 Score=28.34 Aligned_cols=21 Identities=24% Similarity=0.552 Sum_probs=19.0
Q ss_pred CeEEEEecCCCCCccceeccc
Q 024859 172 PEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 172 ~ev~Vrf~gFg~eedewvnv~ 192 (261)
++++|+|.|+...=||||..-
T Consensus 75 ~~Y~VHY~GWn~~WDEWV~e~ 95 (130)
T 3e9g_A 75 KCFFIHYQGWKSSWDEWVGYD 95 (130)
T ss_dssp CEEEEEETTSCGGGCEEEETT
T ss_pred ceEEEEeCCCCCChhhccCHh
Confidence 789999999999999999753
No 258
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=27.18 E-value=33 Score=26.86 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=29.2
Q ss_pred ccccCHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCC
Q 024859 11 AFRFNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSE 48 (261)
Q Consensus 11 Rt~FT~~Ql~eLEk~F~~---~~n~yp~~~~rq~LA~~f~l 48 (261)
.+.||+.|+.+|.++|.. .++.+++..+...+ ..++.
T Consensus 20 ~~~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~-~~lg~ 59 (202)
T 2bec_A 20 ETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQI-GALAV 59 (202)
T ss_dssp HHCCCHHHHHHHHHHHHHHCSSCSSCCCHHHHHTC-HHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHH-HhcCC
Confidence 347999999999999986 35788999888776 55554
No 259
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=27.07 E-value=1.1e+02 Score=27.45 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=40.5
Q ss_pred CCC-CCCCCccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcch
Q 024859 3 RPP-SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRR 71 (261)
Q Consensus 3 rPp-~~~~pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR 71 (261)
||| ...+....||.+|...+++.|...++. -..||+.++- =|..||++-|+|-+
T Consensus 124 R~pe~~~k~s~~WTeEE~~lFleAl~kYGKD------W~~IAk~VgT---------KT~~QcKnfY~~~k 178 (235)
T 2iw5_B 124 RLPEVIQKCNARWTTEEQLLAVQAIRKYGRD------FQAISDVIGN---------KSVVQVKNFFVNYR 178 (235)
T ss_dssp CCCCCCCCCCSSCCHHHHHHHHHHHHHHSSC------HHHHHHHHSS---------CCHHHHHHHHHHTT
T ss_pred cCCCCCCccCCCCCHHHHHHHHHHHHHHCcC------HHHHHHHcCC---------CCHHHHHHHHHHHH
Confidence 444 346677899999999999999997543 6788888873 26789997666544
No 260
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=26.81 E-value=29 Score=24.00 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=28.4
Q ss_pred ccccCHHHHHHHHH---HHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcch
Q 024859 11 AFRFNPAEVTEMEG---ILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRR 71 (261)
Q Consensus 11 Rt~FT~~Ql~eLEk---~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR 71 (261)
+..+++.+...++. .++..-... ...+||+.+|+|. ..|..|-.+++
T Consensus 3 ~~~~~~~~~~~~~~~g~~l~~~R~~~----sq~~lA~~~gis~----------~~is~~E~g~~ 52 (86)
T 2ofy_A 3 RVPLTAEELERGQRLGELLRSARGDM----SMVTVAFDAGISV----------ETLRKIETGRI 52 (86)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTTS----CHHHHHHHHTCCH----------HHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHhCCCH----------HHHHHHHcCCC
Confidence 34566666654432 222221122 4569999999764 77888888875
No 261
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=26.54 E-value=69 Score=21.88 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=29.1
Q ss_pred ccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcch
Q 024859 13 RFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRR 71 (261)
Q Consensus 13 ~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR 71 (261)
.||.++|.++-+...- ...+||+.+|.|. ..|..|=++++
T Consensus 10 ~~~g~~lr~~R~~~gl---------tq~elA~~~gvs~----------~tis~~E~G~~ 49 (73)
T 3fmy_A 10 TVAPEFIVKVRKKLSL---------TQKEASEIFGGGV----------NAFSRYEKGNA 49 (73)
T ss_dssp CCCHHHHHHHHHHTTC---------CHHHHHHHHCSCT----------THHHHHHTTSS
T ss_pred CCCHHHHHHHHHHcCC---------CHHHHHHHhCcCH----------HHHHHHHcCCC
Confidence 4778887776554433 2578999999764 78999998864
No 262
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=26.33 E-value=34 Score=22.07 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=19.0
Q ss_pred HHHHHHHhCCCccccCCcccccchhhhhhhcch
Q 024859 39 LVALAEKFSESPERKGKIMVQMKQVWNWFQNRR 71 (261)
Q Consensus 39 rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR 71 (261)
..+||+.+|+|. ..|..|..+++
T Consensus 21 ~~~lA~~~gis~----------~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSN----------VAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCH----------HHHHHHHTTSS
T ss_pred HHHHHHHHCCCH----------HHHHHHHcCCC
Confidence 578999999764 78999998864
No 263
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=26.23 E-value=83 Score=20.72 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=17.2
Q ss_pred CCCCCHHHHHHHHHHhCCCc
Q 024859 31 NAMPSREILVALAEKFSESP 50 (261)
Q Consensus 31 n~yp~~~~rq~LA~~f~lS~ 50 (261)
...|+.+...+||+.|++++
T Consensus 47 ~~~~~~~~l~~ia~~l~~~~ 66 (76)
T 3bs3_A 47 KSQPSLDMLVKVAELLNVDP 66 (76)
T ss_dssp SSCCCHHHHHHHHHHHTSCG
T ss_pred CCCCCHHHHHHHHHHHCcCH
Confidence 46689999999999999875
No 264
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5
Probab=26.21 E-value=55 Score=24.48 Aligned_cols=34 Identities=6% Similarity=0.122 Sum_probs=26.7
Q ss_pred cCHHHHHHHHHHHHhc----cCCCCCHHHHHHHHHHhC
Q 024859 14 FNPAEVTEMEGILQEH----HNAMPSREILVALAEKFS 47 (261)
Q Consensus 14 FT~~Ql~eLEk~F~~~----~n~yp~~~~rq~LA~~f~ 47 (261)
+|+.++.+|+++|... ++.+++..+...+...++
T Consensus 2 ls~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~ 39 (185)
T 2sas_A 2 LNDFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYK 39 (185)
T ss_dssp CCHHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHheeCCCCCeEcHHHHHHHHHHHH
Confidence 5788999999988765 567888888777776665
No 265
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}
Probab=26.20 E-value=27 Score=27.56 Aligned_cols=38 Identities=3% Similarity=0.107 Sum_probs=21.9
Q ss_pred CccccCHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhC
Q 024859 10 PAFRFNPAEVTEMEGILQE---HHNAMPSREILVALAEKFS 47 (261)
Q Consensus 10 pRt~FT~~Ql~eLEk~F~~---~~n~yp~~~~rq~LA~~f~ 47 (261)
..+.||+.|+.+|.++|.. .++.+++..+...+...++
T Consensus 26 ~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~ 66 (208)
T 2hpk_A 26 NVEDLHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMR 66 (208)
T ss_dssp C---------CHHHHHHHHHCTTCSSEECHHHHTHHHHHHH
T ss_pred cHHHcCHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 3478999999999999976 3467888877777776665
No 266
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=26.12 E-value=76 Score=24.75 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=27.7
Q ss_pred ccCHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHhCC
Q 024859 13 RFNPAEVTEMEGILQEH-HNAMPSREILVALAEKFSE 48 (261)
Q Consensus 13 ~FT~~Ql~eLEk~F~~~-~n~yp~~~~rq~LA~~f~l 48 (261)
.||..||.+|=+.|... ++.+++..+...+...++.
T Consensus 29 ~~~~~~i~~~f~~~d~~~~~G~i~~~ef~~~l~~~~~ 65 (207)
T 2d8n_A 29 KFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFP 65 (207)
T ss_dssp SCCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHTCT
T ss_pred CCCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhcc
Confidence 47888888888888776 4788888888887777754
No 267
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=25.95 E-value=62 Score=24.45 Aligned_cols=51 Identities=8% Similarity=0.079 Sum_probs=29.1
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHHHhCCCcccc-CCcccccchhhhhhhcch
Q 024859 21 EMEGILQEHHNAMPSREILVALAEKFSESPERK-GKIMVQMKQVWNWFQNRR 71 (261)
Q Consensus 21 eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~Ra-GK~~lt~~QVk~WFQNRR 71 (261)
.|.+++...+..+++.+...+|=+++|+|-.-. -.+-++...|..|-++++
T Consensus 58 ~~~e~~r~~~~~~~~~~~l~~~R~~~glsq~~la~~~g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 58 QVKAFRASVNAETVAPEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNA 109 (133)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHHTSS
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHCCCC
Confidence 344445544336677666666555555554332 222355678999998864
No 268
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=25.83 E-value=48 Score=23.81 Aligned_cols=47 Identities=11% Similarity=0.041 Sum_probs=31.4
Q ss_pred cCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhh
Q 024859 14 FNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (261)
Q Consensus 14 FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQ 68 (261)
+|++|+.++=+.|-..++.+++..+...+...++.. ++..+++..|.
T Consensus 2 ls~~el~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~--------~~~~~~~~~~~ 48 (145)
T 2bl0_B 2 ASADQIQECFQIFDKDNDGKVSIEELGSALRSLGKN--------PTNAELNTIKG 48 (145)
T ss_dssp CCHHHHHHHHHHHCTTCSSCEEGGGHHHHHHHTTCC--------CCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCcCccCHHHHHHHHHHhCCC--------CCHHHHHHHHH
Confidence 678884444444444567788888888888888764 35566666665
No 269
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=25.41 E-value=36 Score=21.82 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=18.8
Q ss_pred HHHHHHHhCCCccccCCcccccchhhhhhhcch
Q 024859 39 LVALAEKFSESPERKGKIMVQMKQVWNWFQNRR 71 (261)
Q Consensus 39 rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR 71 (261)
..+||+.+|+|. ..|..|..+++
T Consensus 17 ~~~lA~~~gis~----------~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSR----------QTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCH----------HHHHHHHTTSC
T ss_pred HHHHHHHHCcCH----------HHHHHHHcCCC
Confidence 578999999764 88999998763
No 270
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A*
Probab=25.40 E-value=40 Score=31.00 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=37.3
Q ss_pred CcceEEeeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 141 TFMEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 141 ~~~efEa~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
-.|-+||.-.++-..+=|++...- .| ..++|||-|+....|.|+++.
T Consensus 151 vGmKLEavD~~np~~icvATV~~v----~g-~r~~v~~Dg~~~~~D~w~~~~ 197 (331)
T 1oz2_A 151 VGMKLEAVDRMNPSLVCVASVTDV----VD-SRFLVHFDNWDDTYDYWCDPS 197 (331)
T ss_dssp TTCEEEEECTTSTTCEEEEEEEEE----ET-TEEEEEETTSCGGGCEEECTT
T ss_pred cccEEEeccCCCCCcEEEEEEEEe----eC-CEEEEEeCCCCCccCEEEecC
Confidence 357899999888877777776643 23 579999999999999999863
No 271
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=25.27 E-value=76 Score=25.86 Aligned_cols=60 Identities=13% Similarity=0.141 Sum_probs=34.3
Q ss_pred CeEEEEecCCCCCccceecccccccc---ccccCcccccccccCCceEEEEeecCccceeeeeEEEeeee
Q 024859 172 PEVQVRFAGFGAEEDEWVNIKRHVRQ---RSLPCEASECVAVLPGDLILCFQEGKDQALYFDAHVLDAQR 238 (261)
Q Consensus 172 ~ev~Vrf~gFg~eedewvnv~~~vR~---rS~ple~~eC~~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r 238 (261)
..+.|+..+.+.+-++ +...+.. ...|+.. -..+++|+++++... ++..||-|.|++|..
T Consensus 16 ~~f~vq~~~~~~~l~~---l~~~l~~~~~~~~~~~~--~~~~~~g~~c~a~~~--~d~~wyRa~V~~v~~ 78 (218)
T 2wac_A 16 LTFFAQSVESGSKLES---LMSKLHADFQSNPPIAG--SYTPKRGDLVAAQFT--LDNQWYRAKVERVQG 78 (218)
T ss_dssp SEEEEEEGGGHHHHHH---HHHHHHHHHHHSCCCTT--SCCCCTTCEEEEECT--TTCCEEEEEEEEEET
T ss_pred CEEEEEECCCHHHHHH---HHHHHHHHHhhCCCCCC--CccCCcCCEEEEEEC--CCCeEEEEEEEEecC
Confidence 5688888775542122 2222221 1123332 235779998776543 235799999999853
No 272
>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin regulator, DNA-BIN metal-binding, nucleus, repressor, transcription; HET: MLZ SUC; 2.80A {Drosophila melanogaster}
Probab=25.09 E-value=36 Score=32.73 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=40.1
Q ss_pred CcceEEeeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 141 TFMEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 141 ~~~efEa~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
-.|-+||--.++-...=|++..+-. +..|+|+|-|....-|+|+++.
T Consensus 379 ~gmkLEAvD~~np~~icvATV~~v~-----~~~~~i~fDgw~~~~d~w~~~~ 425 (447)
T 3h6z_A 379 VGMSLECADLMDPRLVCVATVARVV-----GRLLKVHFDGWTDEYDQWLDCE 425 (447)
T ss_dssp TTCEEEEECTTSTTCEEEEEEEEEE-----TTEEEEECTTSCGGGCEEEETT
T ss_pred cCCEEEeecCCCCCcEEEEEEeEec-----CCEEEEEeCCCCCcCCEEEecC
Confidence 4688999999999999888776542 4899999999999999999875
No 273
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=24.95 E-value=1.1e+02 Score=24.61 Aligned_cols=28 Identities=7% Similarity=0.342 Sum_probs=22.6
Q ss_pred cccCCceEEEEeecCccceeeeeEEEeeeec
Q 024859 209 AVLPGDLILCFQEGKDQALYFDAHVLDAQRR 239 (261)
Q Consensus 209 ~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r~ 239 (261)
.|..|+.|-|-+. +.+||=+.|++++-.
T Consensus 5 ~v~vGq~V~akh~---ngryy~~~V~~~~~~ 32 (118)
T 2qqr_A 5 SITAGQKVISKHK---NGRFYQCEVVRLTTE 32 (118)
T ss_dssp CCCTTCEEEEECT---TSSEEEEEEEEEEEE
T ss_pred eeccCCEEEEECC---CCCEEeEEEEEEeeE
Confidence 5788999997444 578999999998755
No 274
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=24.68 E-value=1.1e+02 Score=22.69 Aligned_cols=42 Identities=14% Similarity=0.372 Sum_probs=30.8
Q ss_pred cccCCceEEEEeecCccceeeeeEEEeeeeccCCCCcceeEEEEEEccCCC
Q 024859 209 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQS 259 (261)
Q Consensus 209 ~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r~~Hd~~~C~C~F~Vr~~hd~s 259 (261)
.-..||.|++-=- + +.+||-|+|.+|.-..+ ..+|.|-.|.+
T Consensus 12 ~f~vgd~VmaRW~-G-d~~yYparItSits~~~-------~Y~VkfKdgT~ 53 (68)
T 2dig_A 12 KFADGEVVRGRWP-G-SSLYYEVEILSHDSTSQ-------LYTVKYKDGTE 53 (68)
T ss_dssp SSCSSCEEEEECT-T-TCCEEEEEEEEEETTTT-------EEEEECTTSCE
T ss_pred EeecCCEEEEEcc-C-CccceEEEEEEeccCCc-------eEEEEecCCCE
Confidence 3457999998777 4 48999999999993332 56777766433
No 275
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=24.51 E-value=92 Score=25.72 Aligned_cols=36 Identities=8% Similarity=0.201 Sum_probs=27.3
Q ss_pred cccCHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHhC
Q 024859 12 FRFNPAEVTEMEGILQEH-HNAMPSREILVALAEKFS 47 (261)
Q Consensus 12 t~FT~~Ql~eLEk~F~~~-~n~yp~~~~rq~LA~~f~ 47 (261)
+.||..||.+|-+.|... ++.+++.++...+-..++
T Consensus 86 ~~~s~~ei~~l~~~fd~~~~~G~I~~~ef~~~l~~~~ 122 (256)
T 2jul_A 86 TKFTKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFF 122 (256)
T ss_dssp TTSCHHHHHHHHHHHHHHCTTSSEEHHHHHHHHHHHC
T ss_pred hCCCHHHHHHHHHHHHhhCCCCcCCHHHHHHHHHHHc
Confidence 458999999998888775 467888877777666654
No 276
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=24.43 E-value=82 Score=24.73 Aligned_cols=37 Identities=16% Similarity=0.061 Sum_probs=29.6
Q ss_pred ccCHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCCC
Q 024859 13 RFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSES 49 (261)
Q Consensus 13 ~FT~~Ql~eLEk~F~~~---~n~yp~~~~rq~LA~~f~lS 49 (261)
.++.+|+.+|.++|... ++.+++..+...+-..++..
T Consensus 45 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~ 84 (191)
T 3k21_A 45 QSNDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLK 84 (191)
T ss_dssp HCCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCC
T ss_pred HCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCCC
Confidence 47889999999999763 46788988888888888764
No 277
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=24.40 E-value=19 Score=28.37 Aligned_cols=34 Identities=9% Similarity=0.008 Sum_probs=23.4
Q ss_pred cCHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCC
Q 024859 14 FNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSE 48 (261)
Q Consensus 14 FT~~Ql~eLEk~F~~---~~n~yp~~~~rq~LA~~f~l 48 (261)
+++.|+.+|.+ |.. .++.+++.++...+-..++.
T Consensus 27 ~~~~~~~~l~~-F~~~D~d~~G~i~~~el~~~l~~lg~ 63 (198)
T 1juo_A 27 FPGQTQDPLYG-YFAAVAGQDGQIDADELQRCLTQSGI 63 (198)
T ss_dssp CTTCCCCTTHH-HHHHHHTTTTEECHHHHHHHHHHHTT
T ss_pred CCccccHHHHH-HHHHhCCCCCcCCHHHHHHHHHHhcc
Confidence 66667777766 542 45677888777777777765
No 278
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=24.22 E-value=1.4e+02 Score=21.64 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=35.1
Q ss_pred ccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhC-CCccccCCcccccchhhhhhhc
Q 024859 11 AFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFS-ESPERKGKIMVQMKQVWNWFQN 69 (261)
Q Consensus 11 Rt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~-lS~~RaGK~~lt~~QVk~WFQN 69 (261)
...||.+|-..|++++...+. -+...=..||+.+. - |.+||+.=|++
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~--~~~~rW~~IA~~vpGR----------T~~qcr~Ry~~ 65 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPR--GSSDCWDKIARCVPSK----------SKEDCIARYKL 65 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCS--SSHHHHHHHGGGCSSS----------CHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC--CCCchHHHHHHHcCCC----------CHHHHHHHHHH
Confidence 456999999999999998421 24677899999994 4 35888865544
No 279
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=24.22 E-value=85 Score=20.48 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=16.4
Q ss_pred CCCCCHHHHHHHHHHhCCCc
Q 024859 31 NAMPSREILVALAEKFSESP 50 (261)
Q Consensus 31 n~yp~~~~rq~LA~~f~lS~ 50 (261)
...|+.+....||+.|++++
T Consensus 50 ~~~~~~~~l~~l~~~l~~~~ 69 (74)
T 1y7y_A 50 QRNVSLVNILKLATALDIEP 69 (74)
T ss_dssp CSCCBHHHHHHHHHHTTSCG
T ss_pred CCCCCHHHHHHHHHHhCcCH
Confidence 46788888999999998774
No 280
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=23.72 E-value=40 Score=22.00 Aligned_cols=23 Identities=13% Similarity=-0.064 Sum_probs=19.0
Q ss_pred HHHHHHHhCCCccccCCcccccchhhhhhhcch
Q 024859 39 LVALAEKFSESPERKGKIMVQMKQVWNWFQNRR 71 (261)
Q Consensus 39 rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR 71 (261)
..+||+.+|+|. ..|..|..+++
T Consensus 19 q~~lA~~~gis~----------~~i~~~e~g~~ 41 (71)
T 1zug_A 19 QTELATKAGVKQ----------QSIQLIEAGVT 41 (71)
T ss_dssp HHHHHHHHTSCH----------HHHHHHHTTCC
T ss_pred HHHHHHHhCCCH----------HHHHHHHcCCC
Confidence 578999999764 78999998864
No 281
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.60 E-value=48 Score=27.58 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=10.9
Q ss_pred ccCHHHHHHHHHHHHh
Q 024859 13 RFNPAEVTEMEGILQE 28 (261)
Q Consensus 13 ~FT~~Ql~eLEk~F~~ 28 (261)
-+|.+||..|..+.+.
T Consensus 53 ~Lt~~ei~~i~~~i~~ 68 (148)
T 3j20_O 53 YLTDEQVKKIEEILAD 68 (148)
T ss_dssp BCCHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHhc
Confidence 4677777777777654
No 282
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=23.58 E-value=22 Score=27.31 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=34.3
Q ss_pred CCCCCCCCCCccccCHHH-HHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcc
Q 024859 1 MGRPPSNGGPAFRFNPAE-VTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNR 70 (261)
Q Consensus 1 mgrPp~~~~pRt~FT~~Q-l~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNR 70 (261)
||||... |.++ +..-.++|.+. =+......+||+..|+|. .-|-..|.||
T Consensus 1 M~R~~~~-------~r~~Il~aA~~l~~~~---G~~~~t~~~Ia~~agvs~----------~t~Y~~F~sK 51 (195)
T 2dg7_A 1 MARWDPG-------AEQRLKRAALELYSEH---GYDNVTVTDIAERAGLTR----------RSYFRYFPDK 51 (195)
T ss_dssp CCSSCTT-------HHHHHHHHHHHHHHHS---CGGGCCHHHHHHHTTCCH----------HHHHHHCSST
T ss_pred CCCCcHH-------HHHHHHHHHHHHHHhc---CccccCHHHHHHHhCCCH----------HHHHHHcCCH
Confidence 8998643 3344 34566777773 345556788999999874 5577888886
No 283
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=23.50 E-value=11 Score=25.62 Aligned_cols=48 Identities=6% Similarity=0.161 Sum_probs=32.7
Q ss_pred ccCHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhh
Q 024859 13 RFNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (261)
Q Consensus 13 ~FT~~Ql~eLEk~F~~---~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQ 68 (261)
.+++.++.+|.++|.. .++.+++..+...+-..++.. ++..+|+..|+
T Consensus 16 ~l~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~--------~~~~~~~~l~~ 66 (87)
T 1s6j_A 16 RLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSE--------LMESEIKDLMD 66 (87)
T ss_dssp SSCSSSTTTTTTHHHHHCTTCSSCEEHHHHHHHHHTTTSS--------CCHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCC--------CCHHHHHHHHH
Confidence 3555666667777754 456788888888777777643 56677777765
No 284
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin modification, transcription repression, MBT repeat structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB: 4fl6_A* 1wjs_A
Probab=23.46 E-value=53 Score=30.20 Aligned_cols=47 Identities=23% Similarity=0.444 Sum_probs=39.0
Q ss_pred CcceEEeeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 141 TFMEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 141 ~~~efEa~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
..|.+||-..++-.-.=|++..+- -+..|+|+|.|...+-|.|+++.
T Consensus 250 ~gmkLEAvD~~~p~licvATV~~v-----~g~~l~v~fDgw~~~~d~w~~~~ 296 (324)
T 3ut1_A 250 KKMKLEVVDKRNPMFIRVATVADT-----DDHRVKVHFDGWNNCYDYWIDAD 296 (324)
T ss_dssp TTCEEEEECSSSTTCEEEEEEEEE-----CSSEEEEEETTSCGGGCEEEETT
T ss_pred CCCeeeccCCCCCCceeEEEEEEe-----cCCEEEEEeCCCCCCCCEEEeCC
Confidence 468899999999887778766543 35899999999999999999875
No 285
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=23.06 E-value=97 Score=23.57 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=23.3
Q ss_pred ccccCCceEEEEeecCccceeeeeEEEeeeeccC
Q 024859 208 VAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRH 241 (261)
Q Consensus 208 ~~v~~Gd~vlcf~e~~~~a~y~DA~V~~i~r~~H 241 (261)
.....|+.||+-.. +.+||-+.|++|...++
T Consensus 25 ~~f~eGeDVLarws---DGlfYLGTI~kV~~~~e 55 (79)
T 2m0o_A 25 PRLWEGQDVLARWT---DGLLYLGTIKKVDSARE 55 (79)
T ss_dssp CCCCTTCEEEBCCT---TSCCCEEEEEEEETTTT
T ss_pred ceeccCCEEEEEec---CCCEEeEEEEEeccCCC
Confidence 46788999986433 46899999999876543
No 286
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=22.84 E-value=1.4e+02 Score=20.99 Aligned_cols=43 Identities=14% Similarity=0.146 Sum_probs=31.0
Q ss_pred HHHHHHHHHH---hccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhh
Q 024859 18 EVTEMEGILQ---EHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (261)
Q Consensus 18 Ql~eLEk~F~---~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQ 68 (261)
+..+|+++|. ..++.+++..+...+-..++.. ++..+++.+|+
T Consensus 27 ~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~--------~~~~e~~~l~~ 72 (94)
T 2kz2_A 27 SEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEK--------LTDEEVDEMIR 72 (94)
T ss_dssp CHHHHHHHHHHHCTTCCSCBCHHHHHHHHHHHTCC--------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCC--------CCHHHHHHHHH
Confidence 3455666665 4556889999998888888753 57778887775
No 287
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Probab=22.72 E-value=80 Score=24.10 Aligned_cols=44 Identities=14% Similarity=0.085 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhh
Q 024859 16 PAEVTEMEGILQE---HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWF 67 (261)
Q Consensus 16 ~~Ql~eLEk~F~~---~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WF 67 (261)
.+++.+|.++|.. .++.+++..+...+-..++.. ++..+|+.+|
T Consensus 44 ~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~g~~--------~~~~~~~~l~ 90 (147)
T 1wy9_A 44 PSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVP--------KTHLELKRLI 90 (147)
T ss_dssp HHHHHHHHHHHTTSCCCTTSSEEHHHHHHHHHHTTCC--------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCC--------CCHHHHHHHH
Confidence 5778888888864 335677877777777777643 3445555555
No 288
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=22.68 E-value=50 Score=25.56 Aligned_cols=47 Identities=11% Similarity=0.054 Sum_probs=31.9
Q ss_pred cccCHHHH-HHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcch
Q 024859 12 FRFNPAEV-TEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRR 71 (261)
Q Consensus 12 t~FT~~Ql-~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR 71 (261)
..-|.++| ..-.++|.++ =+......+||+..|+|. .-+-..|.||-
T Consensus 28 ~~~~r~~Il~aA~~l~~~~---G~~~~t~~~IA~~aGvs~----------~t~Y~~F~sK~ 75 (222)
T 3bru_A 28 ASLAHQSLIRAGLEHLTEK---GYSSVGVDEILKAARVPK----------GSFYHYFRNKA 75 (222)
T ss_dssp GGGHHHHHHHHHHHHHHHS---CTTTCCHHHHHHHHTCCH----------HHHHHHCSSHH
T ss_pred hhhHHHHHHHHHHHHHHHc---CCCcCcHHHHHHHhCCCc----------chhhhhCCCHH
Confidence 34555554 4567777774 355666788999999874 55777887763
No 289
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A*
Probab=22.43 E-value=55 Score=30.06 Aligned_cols=47 Identities=21% Similarity=0.398 Sum_probs=38.5
Q ss_pred CcceEEeeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 141 TFMEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 141 ~~~efEa~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
..|-+||-..++-...-|++..+- .| ..|+|+|.|...+-|.|++..
T Consensus 255 ~gmKLEavD~~~p~~ic~AtV~~v----~~-~~l~v~fDgw~~~~d~w~~~d 301 (331)
T 1oz2_A 255 VNMKLEAVDRRNPALIRVASVEDV----ED-HRIKIHFDGWSHGYDFWIDAD 301 (331)
T ss_dssp TTCEEEEECSSSTTCEEEEEEEEE----CS-SEEEEEETTBCGGGCEEEETT
T ss_pred cCceeEeecccCCCcEEeeEEEEE----cC-CEEEEEeCCCCCcCCEEEECC
Confidence 468899999999987777766544 23 679999999999999999875
No 290
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=22.12 E-value=1.2e+02 Score=20.30 Aligned_cols=29 Identities=28% Similarity=0.316 Sum_probs=21.7
Q ss_pred ccCHHHHHHH--HHHHHhccCCCCCHHHHHHH
Q 024859 13 RFNPAEVTEM--EGILQEHHNAMPSREILVAL 42 (261)
Q Consensus 13 ~FT~~Ql~eL--Ek~F~~~~n~yp~~~~rq~L 42 (261)
.+|++|++.| |+...+. |++++-++...|
T Consensus 1 ~mtpe~~~~~~~~~ei~~R-NrpltDEeLD~m 31 (39)
T 3lqv_P 1 SMTPEQLQAWRWEREIDER-NRPLSDEELDAM 31 (39)
T ss_dssp CCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHT
T ss_pred CCCHHHHHHHHhhccchhh-cCCCCHHHHHHh
Confidence 3688888765 8888876 799998876654
No 291
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=22.11 E-value=45 Score=22.04 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=19.0
Q ss_pred HHHHHHHhCCCccccCCcccccchhhhhhhcch
Q 024859 39 LVALAEKFSESPERKGKIMVQMKQVWNWFQNRR 71 (261)
Q Consensus 39 rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR 71 (261)
..+||+.+|+|. ..|..|..+++
T Consensus 21 ~~~lA~~~gis~----------~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSN----------VAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCH----------HHHHHHHTTSS
T ss_pred HHHHHHHHCcCH----------HHHHHHHcCCC
Confidence 578999999764 78999998864
No 292
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin regulator, metal-binding, nucleus, transcript transcription regulation, zinc-finger; HET: MLZ; 2.10A {Homo sapiens} PDB: 3dbb_A* 3cey_A
Probab=22.09 E-value=53 Score=31.69 Aligned_cols=47 Identities=21% Similarity=0.348 Sum_probs=39.2
Q ss_pred CcceEEeeccCCCceeehhhhhhcccccCCCCeEEEEecCCCCCccceeccc
Q 024859 141 TFMEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (261)
Q Consensus 141 ~~~efEa~S~~D~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~eedewvnv~ 192 (261)
-.|.+||...++-...=|++...- . +..|+|+|-|...+-|+|+++-
T Consensus 369 ~GMKLEAvD~~np~~icvATV~~v--~---~~~l~i~fDgw~~~~d~w~~~~ 415 (456)
T 3f70_A 369 VGMKLEAVDLMEPRLICVATVKRV--V---HRLLSIHFDGWDSEYDQWVDCE 415 (456)
T ss_dssp TTCEEEEECTTSTTCEEEEEEEEE--E---TTEEEEEETTSCGGGCEEEETT
T ss_pred cCCEEEeecCCCCCcEEEEEEEEe--c---CCEEEEEeCCCCCCCCeEeecC
Confidence 467899999999998888876543 2 4699999999999999999864
No 293
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens}
Probab=21.99 E-value=64 Score=30.86 Aligned_cols=43 Identities=19% Similarity=0.331 Sum_probs=0.0
Q ss_pred ceEEeeccCC----CceeehhhhhhcccccCCCCeEEEEecCCCC--Cccceecc
Q 024859 143 MEFEAKSARD----GAWYDVSAFLAQRNFDTADPEVQVRFAGFGA--EEDEWVNI 191 (261)
Q Consensus 143 ~efEa~S~~D----~AWydv~~fl~~R~l~~ge~ev~Vrf~gFg~--eedewvnv 191 (261)
|-+|+....+ ...+=+.+.-.. | .-|++||.||++ ..|=|+|+
T Consensus 47 mklEv~~~~~~~~~~~yWvA~V~~~~-----G-~rllLry~G~~~d~~~DFW~~~ 95 (437)
T 3feo_A 47 VRVEVPNTDCSLPTKVFWIAGIVKLA-----G-YNALLRYEGFENDSGLDFWCNI 95 (437)
T ss_dssp CEEEEECSCC----CCEEEEEEEEEE-----T-TEEEEEETTCTTCCTTCEEEET
T ss_pred CEEEEecCCCCCCcCceEEEEEeeec-----c-eEEEEEecccCCCCCCCcceeC
No 294
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=21.74 E-value=1.1e+02 Score=21.17 Aligned_cols=20 Identities=15% Similarity=-0.122 Sum_probs=15.7
Q ss_pred CCCCCHHHHHHHHHHhCCCc
Q 024859 31 NAMPSREILVALAEKFSESP 50 (261)
Q Consensus 31 n~yp~~~~rq~LA~~f~lS~ 50 (261)
...|+......||+.|++++
T Consensus 54 ~~~~~~~~l~~ia~~l~v~~ 73 (92)
T 1lmb_3 54 INALNAYNAALLAKILKVSV 73 (92)
T ss_dssp SSCCCHHHHHHHHHHHTSCG
T ss_pred CCCCCHHHHHHHHHHHCCCH
Confidence 35688888888888888764
No 295
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Probab=21.67 E-value=71 Score=24.38 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=27.6
Q ss_pred CccccCHHHHHHHHHHHHhc--------c-C--CCCCHHHHHHHHHHhCC
Q 024859 10 PAFRFNPAEVTEMEGILQEH--------H-N--AMPSREILVALAEKFSE 48 (261)
Q Consensus 10 pRt~FT~~Ql~eLEk~F~~~--------~-n--~yp~~~~rq~LA~~f~l 48 (261)
..+.||+.|+.+|.++|... + + .+++..+... -..++.
T Consensus 10 ~~~~ls~~~~~~l~~~F~~~D~~~~~~~~~~~~G~i~~~el~~-l~~~g~ 58 (183)
T 1dgu_A 10 DLTFLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILS-LPELKA 58 (183)
T ss_dssp CCCSCCHHHHHHHHHHHHHHSCSTTCSSCCCTTTCSCHHHHHT-STTSSS
T ss_pred HHcCCCHHHHHHHHHHHHHhCccccccccccccCcCcHHHHHH-HHhhhc
Confidence 45789999999999999884 3 4 7788776655 334443
No 296
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=21.65 E-value=43 Score=22.97 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCccccCCcccccchhhhhhhcch
Q 024859 39 LVALAEKFSESPERKGKIMVQMKQVWNWFQNRR 71 (261)
Q Consensus 39 rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR 71 (261)
..+||+.+|+|. ..|..|..+++
T Consensus 14 q~~lA~~lgvs~----------~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQ----------SAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCH----------HHHHHHHHHTC
T ss_pred HHHHHHHHCCCH----------HHHHHHHHCCC
Confidence 579999999764 77999998875
No 297
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=21.55 E-value=90 Score=20.60 Aligned_cols=20 Identities=5% Similarity=-0.079 Sum_probs=16.7
Q ss_pred CCCCCHHHHHHHHHHhCCCc
Q 024859 31 NAMPSREILVALAEKFSESP 50 (261)
Q Consensus 31 n~yp~~~~rq~LA~~f~lS~ 50 (261)
...|+......||+.|++++
T Consensus 47 ~~~~~~~~l~~la~~l~~~~ 66 (77)
T 2b5a_A 47 DRNISLINIHKICAALDIPA 66 (77)
T ss_dssp CSCCBHHHHHHHHHHTTCCH
T ss_pred CCCCCHHHHHHHHHHhCcCH
Confidence 45788999999999999774
No 298
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=21.41 E-value=2.8e+02 Score=21.28 Aligned_cols=54 Identities=7% Similarity=-0.012 Sum_probs=31.6
Q ss_pred ccccCHHHHHHHHHHHHhccCCCCCHH-HHHHHHHHhCCCccccCCcccccchhhhhhhcc
Q 024859 11 AFRFNPAEVTEMEGILQEHHNAMPSRE-ILVALAEKFSESPERKGKIMVQMKQVWNWFQNR 70 (261)
Q Consensus 11 Rt~FT~~Ql~eLEk~F~~~~n~yp~~~-~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNR 70 (261)
...++.++.+++.+++.+. .-.+.. ..+.|.+.. +. ...+.++...|..|+...
T Consensus 81 ~~~~~~~~~~~I~~~~~~~--~~~s~~~i~~~l~~~~-~~---~~~~~~S~sTV~r~L~~~ 135 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQN--PTMFAWEIRDRLLAEG-VC---DNDTVPSVSSINRIIRTK 135 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHC--SSSCHHHHHHHHHHHT-CS---CTTTSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHC--ccchHHHHHHHHHHhc-cc---ccCCccCHHHHHHHHHHH
Confidence 4467888888898888773 444433 233343322 00 002346778999998763
No 299
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=21.22 E-value=84 Score=24.20 Aligned_cols=36 Identities=8% Similarity=0.088 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCCCc
Q 024859 15 NPAEVTEMEGILQEH---HNAMPSREILVALAEKFSESP 50 (261)
Q Consensus 15 T~~Ql~eLEk~F~~~---~n~yp~~~~rq~LA~~f~lS~ 50 (261)
+++|+.+|+++|... ++.+++..+...+-..++.++
T Consensus 34 ~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~ 72 (180)
T 3mse_B 34 INNHIKYINELFYKLDTNHNGSLSHREIYTVLASVGIKK 72 (180)
T ss_dssp HHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCH
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCH
Confidence 388999999999753 467899988888888888653
No 300
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}
Probab=20.93 E-value=1.1e+02 Score=21.62 Aligned_cols=45 Identities=13% Similarity=0.092 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhh
Q 024859 16 PAEVTEMEGILQE---HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (261)
Q Consensus 16 ~~Ql~eLEk~F~~---~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQ 68 (261)
+.++.+|.++|.. .++.+++..+...+-..+|.. ++..+|..+|.
T Consensus 28 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~--------~~~~~~~~l~~ 75 (107)
T 2d58_A 28 PSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVP--------KTHLELKKLIG 75 (107)
T ss_dssp HHHHHHHHHHHTTSCCCTTSCEEHHHHHHHHHHTTCC--------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCC--------CCHHHHHHHHH
Confidence 7888999998874 345788888888888887753 46667776664
No 301
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=20.91 E-value=64 Score=26.99 Aligned_cols=16 Identities=0% Similarity=0.283 Sum_probs=10.7
Q ss_pred ccCHHHHHHHHHHHHh
Q 024859 13 RFNPAEVTEMEGILQE 28 (261)
Q Consensus 13 ~FT~~Ql~eLEk~F~~ 28 (261)
-+|.+||..|..+++.
T Consensus 60 ~Lt~~ei~~l~~~i~~ 75 (155)
T 2xzm_M 60 LLTEDQCNKITDLIAD 75 (155)
T ss_dssp CSCHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHhC
Confidence 3677777777776654
No 302
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Probab=20.81 E-value=1.5e+02 Score=22.51 Aligned_cols=54 Identities=9% Similarity=0.004 Sum_probs=33.9
Q ss_pred cccCHHHHHHHHHHHHhcc----CC-CCCHHHHHHHHHH-hCCCccccCCcccccchhhhhhhc
Q 024859 12 FRFNPAEVTEMEGILQEHH----NA-MPSREILVALAEK-FSESPERKGKIMVQMKQVWNWFQN 69 (261)
Q Consensus 12 t~FT~~Ql~eLEk~F~~~~----n~-yp~~~~rq~LA~~-f~lS~~RaGK~~lt~~QVk~WFQN 69 (261)
..++..++.+|.++|.... +. +++..+...+-.. ++. -.| ..+++.+|+.+|+.
T Consensus 14 ~s~~~~~~~~l~~aF~~fD~~dgdGG~Is~~EL~~~l~~~l~~---~lg-~~~t~~ev~~li~~ 73 (113)
T 2lnk_A 14 ACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPS---FLG-KRTDEAAFQKLMSN 73 (113)
T ss_dssp CCHHHHHHHHHHHHHHHTTTTTSCTTCBCHHHHHHHHHHHCGG---GGT-TCCCTTHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHcccCCCCCEECHHHHHHHHHHHcch---hcC-CCCCHHHHHHHHHH
Confidence 4566788899999997642 22 8999888887764 320 000 12455667777653
No 303
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=20.77 E-value=1.1e+02 Score=22.32 Aligned_cols=20 Identities=25% Similarity=0.208 Sum_probs=16.8
Q ss_pred CCCCCHHHHHHHHHHhCCCc
Q 024859 31 NAMPSREILVALAEKFSESP 50 (261)
Q Consensus 31 n~yp~~~~rq~LA~~f~lS~ 50 (261)
+..|+.+...+||+.|++++
T Consensus 60 G~~~s~~~l~kIa~~L~v~~ 79 (88)
T 3t76_A 60 NENVSLTVLLAICEYLNCDF 79 (88)
T ss_dssp TCCCCHHHHHHHHHHHTCCG
T ss_pred CCCcCHHHHHHHHHHHCcCH
Confidence 35689999999999999875
No 304
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=20.69 E-value=21 Score=28.30 Aligned_cols=36 Identities=8% Similarity=0.173 Sum_probs=26.0
Q ss_pred ccCHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCC
Q 024859 13 RFNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSE 48 (261)
Q Consensus 13 ~FT~~Ql~eLEk~F~~---~~n~yp~~~~rq~LA~~f~l 48 (261)
.||++|+.+|.++|.. .++.+++..+...+-..++.
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~dG~I~~~E~~~~l~~~g~ 41 (188)
T 1s6i_A 3 RLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGS 41 (188)
T ss_dssp SSSCTTTCSHHHHHHTTSSSSSSCEEHHHHHHHHTTTTC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCC
Confidence 5788888888888875 34567887777766666654
No 305
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=20.58 E-value=1.6e+02 Score=19.82 Aligned_cols=45 Identities=9% Similarity=0.116 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHh----ccCC-CCCHHHHHHHHHH-----hCCCccccCCcccccchhhhhhh
Q 024859 16 PAEVTEMEGILQE----HHNA-MPSREILVALAEK-----FSESPERKGKIMVQMKQVWNWFQ 68 (261)
Q Consensus 16 ~~Ql~eLEk~F~~----~~n~-yp~~~~rq~LA~~-----f~lS~~RaGK~~lt~~QVk~WFQ 68 (261)
..++.+|.++|.. .++. +++..+...+-.. ++.. +++.+|+..|+
T Consensus 5 ~~~~~~l~~~F~~~D~~d~~G~~I~~~el~~~l~~~~~~~~g~~--------~~~~~~~~~~~ 59 (93)
T 1k2h_A 5 ETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQ--------KDADAVDKIMK 59 (93)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCSSCCHHHHHHHHHHHTHHHHHCC--------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccCCCcCccCHHHHHHHHHHHHHHHhCCC--------CCHHHHHHHHH
Confidence 3567777877754 3345 8898877777665 5532 45566766664
No 306
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=20.44 E-value=85 Score=25.56 Aligned_cols=34 Identities=9% Similarity=0.137 Sum_probs=23.0
Q ss_pred cccCHHHHHHHHHHHHh-ccCCCCCHHHHHHHHHH
Q 024859 12 FRFNPAEVTEMEGILQE-HHNAMPSREILVALAEK 45 (261)
Q Consensus 12 t~FT~~Ql~eLEk~F~~-~~n~yp~~~~rq~LA~~ 45 (261)
+.||..||.+|-+.|.. .++.+++.++...+-..
T Consensus 59 ~~~s~~ei~~l~~~F~~~d~~G~Is~~ef~~~l~~ 93 (229)
T 3dd4_A 59 SKFTKKELQILYRGFKNECPSGVVNEETFKEIYSQ 93 (229)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCCCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHH
Confidence 46788888888888853 34567777666665554
No 307
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=20.37 E-value=51 Score=21.31 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=18.8
Q ss_pred HHHHHHHhCCCccccCCcccccchhhhhhhcch
Q 024859 39 LVALAEKFSESPERKGKIMVQMKQVWNWFQNRR 71 (261)
Q Consensus 39 rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR 71 (261)
..+||+.+|+|. ..|..|..+++
T Consensus 17 q~~lA~~~gis~----------~~i~~~e~g~~ 39 (69)
T 1r69_A 17 QAELAQKVGTTQ----------QSIEQLENGKT 39 (69)
T ss_dssp HHHHHHHHTSCH----------HHHHHHHTTSC
T ss_pred HHHHHHHHCcCH----------HHHHHHHcCCC
Confidence 578999999764 78999988864
No 308
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=20.36 E-value=1.5e+02 Score=20.09 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=15.3
Q ss_pred HHHHHHHhCCCccccCCcccccchhhhhhhcchh
Q 024859 39 LVALAEKFSESPERKGKIMVQMKQVWNWFQNRRY 72 (261)
Q Consensus 39 rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~ 72 (261)
..+||+.+|+|. ..|..|..+++.
T Consensus 28 q~~lA~~~gvs~----------~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQ----------SAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCH----------HHHHHHHTTSSC
T ss_pred HHHHHHHhCcCH----------HHHHHHHcCCCC
Confidence 356777777553 567777776654
No 309
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=20.22 E-value=1.3e+02 Score=22.38 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=34.6
Q ss_pred CccccCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccccCCcccccchhhhhhhcchhhH
Q 024859 10 PAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAI 74 (261)
Q Consensus 10 pRt~FT~~Ql~eLEk~F~~~~n~yp~~~~rq~LA~~f~lS~~RaGK~~lt~~QVk~WFQNRR~k~ 74 (261)
+...+|+.|...|.-+++.. ..++||+.+++|+ .-|+++.++=+.|.
T Consensus 31 ~~~~Lt~re~~Vl~l~~~G~--------s~~EIA~~L~iS~----------~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 31 GDKRLSPKESEVLRLFAEGF--------LVTEIAKKLNRSI----------KTISSQKKSAMMKL 77 (99)
T ss_dssp SSSSCCHHHHHHHHHHHHTC--------CHHHHHHHHTSCH----------HHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHcCC--------CHHHHHHHHCcCH----------HHHHHHHHHHHHHH
Confidence 35679999999997765331 2389999999775 88998877655444
Done!