Query 024860
Match_columns 261
No_of_seqs 283 out of 1878
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 15:40:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024860.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024860hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h89_C C-MYB, MYB proto-oncoge 100.0 5.3E-37 1.8E-41 255.7 2.5 138 11-149 3-158 (159)
2 3zqc_A MYB3; transcription-DNA 100.0 2.7E-35 9.2E-40 238.2 11.6 109 14-123 2-110 (131)
3 1gv2_A C-MYB, MYB proto-oncoge 100.0 1.8E-35 6.1E-40 230.3 9.2 105 11-116 1-105 (105)
4 2k9n_A MYB24; R2R3 domain, DNA 100.0 3.3E-35 1.1E-39 229.9 7.9 104 14-118 1-104 (107)
5 1h8a_C AMV V-MYB, MYB transfor 100.0 1.5E-34 5.2E-39 232.8 8.7 111 5-116 18-128 (128)
6 3osg_A MYB21; transcription-DN 100.0 2.4E-34 8.2E-39 231.3 9.1 106 8-115 5-110 (126)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 4.8E-32 1.6E-36 225.7 7.6 108 8-116 52-159 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 7.1E-28 2.4E-32 193.8 2.4 109 40-149 1-127 (128)
9 2dim_A Cell division cycle 5-l 99.9 2.4E-23 8.4E-28 150.6 1.3 66 9-75 4-69 (70)
10 2dim_A Cell division cycle 5-l 99.8 2.3E-19 7.8E-24 129.6 6.9 65 62-126 4-69 (70)
11 1ign_A Protein (RAP1); RAP1,ye 99.8 1.9E-19 6.5E-24 156.8 6.6 105 10-115 4-200 (246)
12 2llk_A Cyclin-D-binding MYB-li 99.8 1.6E-19 5.4E-24 131.5 4.7 57 54-111 10-66 (73)
13 2din_A Cell division cycle 5-l 99.8 6.7E-19 2.3E-23 125.8 6.2 60 60-120 2-61 (66)
14 1gv2_A C-MYB, MYB proto-oncoge 99.7 1.9E-19 6.4E-24 139.6 1.2 85 64-148 1-103 (105)
15 2juh_A Telomere binding protei 99.7 3.4E-19 1.2E-23 141.3 2.3 84 8-91 11-103 (121)
16 3osg_A MYB21; transcription-DN 99.7 2.8E-19 9.7E-24 143.2 1.0 88 62-149 6-110 (126)
17 2d9a_A B-MYB, MYB-related prot 99.7 2.9E-18 9.8E-23 120.2 5.9 56 62-117 3-59 (60)
18 2cu7_A KIAA1915 protein; nucle 99.7 1E-17 3.6E-22 121.6 7.7 58 61-118 3-60 (72)
19 2d9a_A B-MYB, MYB-related prot 99.7 1.5E-18 5.3E-23 121.5 3.1 57 9-66 3-59 (60)
20 1gvd_A MYB proto-oncogene prot 99.7 1.8E-18 6.2E-23 117.8 2.8 52 12-64 1-52 (52)
21 2roh_A RTBP1, telomere binding 99.7 2.7E-18 9.2E-23 136.3 4.1 80 9-88 26-114 (122)
22 3zqc_A MYB3; transcription-DNA 99.7 3.7E-18 1.3E-22 137.5 4.4 86 67-152 2-105 (131)
23 1ity_A TRF1; helix-turn-helix, 99.7 2.1E-17 7.1E-22 119.0 6.9 62 60-121 3-67 (69)
24 1guu_A C-MYB, MYB proto-oncoge 99.7 1.7E-17 5.9E-22 112.8 5.8 50 65-114 1-51 (52)
25 1guu_A C-MYB, MYB proto-oncoge 99.7 3.1E-18 1.1E-22 116.5 1.9 52 12-64 1-52 (52)
26 1gvd_A MYB proto-oncogene prot 99.7 2.2E-17 7.6E-22 112.3 5.9 50 65-114 1-51 (52)
27 1ity_A TRF1; helix-turn-helix, 99.7 5.1E-18 1.7E-22 122.2 2.4 64 8-71 4-68 (69)
28 2k9n_A MYB24; R2R3 domain, DNA 99.7 1.1E-18 3.8E-23 135.9 -2.1 83 67-149 1-101 (107)
29 1w0t_A Telomeric repeat bindin 99.7 1.2E-16 4.2E-21 109.2 5.9 49 66-114 1-52 (53)
30 1x41_A Transcriptional adaptor 99.7 1.2E-16 4.3E-21 111.9 5.9 54 62-115 3-57 (60)
31 3sjm_A Telomeric repeat-bindin 99.6 1.7E-16 5.7E-21 112.7 5.9 52 65-116 9-63 (64)
32 3sjm_A Telomeric repeat-bindin 99.6 3.1E-17 1.1E-21 116.6 1.6 56 11-66 8-64 (64)
33 2yum_A ZZZ3 protein, zinc fing 99.6 1.7E-16 5.9E-21 115.9 5.4 59 62-120 3-67 (75)
34 1x41_A Transcriptional adaptor 99.6 6.2E-17 2.1E-21 113.5 2.3 55 9-64 3-57 (60)
35 2elk_A SPCC24B10.08C protein; 99.6 1.5E-15 5E-20 105.8 6.1 50 63-112 5-56 (58)
36 2din_A Cell division cycle 5-l 99.6 9.7E-17 3.3E-21 114.4 -0.6 59 8-69 3-61 (66)
37 2yum_A ZZZ3 protein, zinc fing 99.6 1.9E-16 6.5E-21 115.6 0.8 61 8-69 2-67 (75)
38 2elk_A SPCC24B10.08C protein; 99.6 3.8E-16 1.3E-20 108.7 2.0 51 11-61 6-56 (58)
39 1w0t_A Telomeric repeat bindin 99.6 3.3E-16 1.1E-20 107.0 1.6 50 13-62 1-51 (53)
40 2ltp_A Nuclear receptor corepr 99.3 3.2E-16 1.1E-20 118.3 0.0 56 60-115 9-64 (89)
41 2cu7_A KIAA1915 protein; nucle 99.5 1.1E-15 3.7E-20 110.9 0.5 58 8-67 3-60 (72)
42 2aje_A Telomere repeat-binding 99.5 1.9E-14 6.4E-19 111.5 3.5 79 8-86 7-94 (105)
43 2cqr_A RSGI RUH-043, DNAJ homo 99.5 6.4E-14 2.2E-18 101.8 5.9 51 63-113 14-68 (73)
44 2ckx_A NGTRF1, telomere bindin 99.5 2.4E-14 8.2E-19 106.6 3.6 69 15-84 1-79 (83)
45 2llk_A Cyclin-D-binding MYB-li 99.4 2.4E-14 8.1E-19 104.1 2.6 61 3-67 12-72 (73)
46 2yus_A SWI/SNF-related matrix- 99.4 3.8E-14 1.3E-18 104.6 3.5 53 6-60 10-62 (79)
47 2yus_A SWI/SNF-related matrix- 99.4 1.1E-13 3.9E-18 102.0 4.6 48 64-111 15-62 (79)
48 2juh_A Telomere binding protei 99.4 1.9E-13 6.4E-18 108.3 5.7 54 61-114 11-69 (121)
49 1ign_A Protein (RAP1); RAP1,ye 99.4 2.2E-13 7.4E-18 118.8 6.3 63 63-126 4-72 (246)
50 2ckx_A NGTRF1, telomere bindin 99.4 3.9E-13 1.3E-17 100.0 6.7 48 68-115 1-53 (83)
51 2aje_A Telomere repeat-binding 99.4 5E-13 1.7E-17 103.5 7.4 53 63-115 9-66 (105)
52 2roh_A RTBP1, telomere binding 99.4 5.5E-13 1.9E-17 105.8 6.4 52 63-114 27-83 (122)
53 2ltp_A Nuclear receptor corepr 99.0 6.6E-14 2.2E-18 105.6 0.0 54 8-63 10-63 (89)
54 1x58_A Hypothetical protein 49 99.3 1.1E-12 3.9E-17 91.6 6.1 49 66-114 7-58 (62)
55 2cqr_A RSGI RUH-043, DNAJ homo 99.3 1.8E-13 6.1E-18 99.5 1.6 56 6-62 10-68 (73)
56 2cjj_A Radialis; plant develop 99.3 6.7E-12 2.3E-16 95.2 6.0 50 66-115 7-60 (93)
57 2eqr_A N-COR1, N-COR, nuclear 99.0 4.1E-10 1.4E-14 78.8 6.0 48 66-113 11-58 (61)
58 2cjj_A Radialis; plant develop 99.0 3.6E-11 1.2E-15 91.2 0.5 47 14-61 8-57 (93)
59 3hm5_A DNA methyltransferase 1 98.9 1E-09 3.5E-14 82.9 6.0 65 51-119 18-87 (93)
60 1x58_A Hypothetical protein 49 98.9 4.6E-10 1.6E-14 78.4 1.8 49 12-62 6-57 (62)
61 2cqq_A RSGI RUH-037, DNAJ homo 98.9 2.7E-09 9.3E-14 77.1 5.6 50 64-114 5-58 (72)
62 2eqr_A N-COR1, N-COR, nuclear 98.8 2E-09 6.8E-14 75.3 2.3 50 9-60 7-56 (61)
63 2iw5_B Protein corest, REST co 98.7 1.4E-08 4.8E-13 87.8 6.2 49 66-114 132-180 (235)
64 1fex_A TRF2-interacting telome 98.7 2.1E-08 7E-13 69.7 4.9 47 67-113 2-58 (59)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.6 8.4E-09 2.9E-13 74.5 0.8 51 10-62 4-57 (72)
66 1wgx_A KIAA1903 protein; MYB D 98.6 9.5E-08 3.2E-12 69.0 5.7 48 67-114 8-59 (73)
67 1fex_A TRF2-interacting telome 98.5 1.5E-08 5E-13 70.4 1.0 48 14-62 2-58 (59)
68 2xag_B REST corepressor 1; ami 98.5 9.2E-08 3.1E-12 91.3 5.0 46 68-113 381-426 (482)
69 1wgx_A KIAA1903 protein; MYB D 98.4 5.5E-08 1.9E-12 70.2 1.2 48 14-62 8-58 (73)
70 2iw5_B Protein corest, REST co 98.4 2.2E-07 7.6E-12 80.3 3.9 50 11-62 130-179 (235)
71 1ofc_X ISWI protein; nuclear p 98.1 5.1E-06 1.7E-10 75.2 7.2 102 15-117 111-278 (304)
72 1ug2_A 2610100B20RIK gene prod 98.1 3.8E-06 1.3E-10 62.5 5.1 50 68-117 34-86 (95)
73 2yqk_A Arginine-glutamic acid 98.0 1.3E-05 4.5E-10 56.0 6.6 49 62-110 4-53 (63)
74 4eef_G F-HB80.4, designed hema 98.0 1.2E-06 4.3E-11 62.8 0.8 44 14-58 20-66 (74)
75 4eef_G F-HB80.4, designed hema 98.0 2E-06 6.9E-11 61.7 1.7 43 67-109 20-66 (74)
76 2lr8_A CAsp8-associated protei 97.2 9.9E-07 3.4E-11 62.2 0.0 45 69-114 16-63 (70)
77 2yqk_A Arginine-glutamic acid 97.8 7.8E-06 2.7E-10 57.2 2.6 49 9-59 4-53 (63)
78 4iej_A DNA methyltransferase 1 97.7 0.0001 3.4E-09 55.4 7.0 61 55-119 22-87 (93)
79 4a69_C Nuclear receptor corepr 97.5 0.00014 4.9E-09 54.8 6.0 44 67-110 43-86 (94)
80 2xag_B REST corepressor 1; ami 97.5 2.9E-05 1E-09 74.1 2.2 48 12-61 378-425 (482)
81 2crg_A Metastasis associated p 97.4 0.00028 9.4E-09 50.3 6.1 44 67-110 8-52 (70)
82 3hm5_A DNA methyltransferase 1 97.3 4.9E-05 1.7E-09 57.2 1.2 49 12-61 28-80 (93)
83 2ebi_A DNA binding protein GT- 97.3 0.00018 6.3E-09 52.9 3.9 51 66-116 3-67 (86)
84 2crg_A Metastasis associated p 97.2 0.00012 4.2E-09 52.2 1.8 45 13-59 7-52 (70)
85 4a69_C Nuclear receptor corepr 97.1 0.00013 4.5E-09 55.0 1.6 43 14-58 43-85 (94)
86 1ug2_A 2610100B20RIK gene prod 97.0 0.00024 8.3E-09 52.8 1.6 51 9-60 28-80 (95)
87 2y9y_A Imitation switch protei 96.9 0.0023 7.8E-08 59.2 7.7 105 15-119 124-296 (374)
88 2ebi_A DNA binding protein GT- 96.9 9.6E-05 3.3E-09 54.5 -1.2 49 13-61 3-63 (86)
89 2lr8_A CAsp8-associated protei 95.7 0.00028 9.4E-09 49.8 0.0 51 9-61 9-61 (70)
90 4b4c_A Chromodomain-helicase-D 96.6 0.001 3.6E-08 56.5 3.2 46 68-113 135-195 (211)
91 4b4c_A Chromodomain-helicase-D 95.1 0.019 6.6E-07 48.5 4.4 38 5-42 125-162 (211)
92 1irz_A ARR10-B; helix-turn-hel 94.9 0.063 2.2E-06 37.4 5.8 48 65-112 5-57 (64)
93 4iej_A DNA methyltransferase 1 94.5 0.011 3.8E-07 44.2 1.3 49 12-61 28-80 (93)
94 1ofc_X ISWI protein; nuclear p 92.0 0.25 8.7E-06 44.4 6.2 46 67-112 110-156 (304)
95 2xb0_X Chromo domain-containin 91.3 0.16 5.4E-06 45.0 4.1 28 15-42 169-196 (270)
96 2xb0_X Chromo domain-containin 89.4 0.23 7.9E-06 44.0 3.4 27 68-94 169-196 (270)
97 1irz_A ARR10-B; helix-turn-hel 88.8 0.17 6E-06 35.1 1.7 49 11-60 4-56 (64)
98 1u78_A TC3 transposase, transp 66.4 26 0.0009 26.0 7.8 89 16-107 6-99 (141)
99 2y9y_A Imitation switch protei 60.7 13 0.00044 34.2 5.7 46 68-114 124-171 (374)
100 2o8x_A Probable RNA polymerase 57.4 15 0.0005 24.1 4.3 41 73-114 18-58 (70)
101 2rq5_A Protein jumonji; develo 56.9 3 0.0001 32.3 0.7 57 24-83 46-113 (121)
102 2li6_A SWI/SNF chromatin-remod 55.1 2.1 7E-05 32.8 -0.5 39 24-63 53-98 (116)
103 1ku3_A Sigma factor SIGA; heli 54.0 18 0.00061 24.3 4.4 44 70-115 11-58 (73)
104 1ig6_A MRF-2, modulator recogn 51.1 3.4 0.00012 31.0 0.1 41 23-63 36-87 (107)
105 2p7v_B Sigma-70, RNA polymeras 49.8 19 0.00066 23.8 3.9 40 75-115 10-53 (68)
106 2k27_A Paired box protein PAX- 48.4 67 0.0023 24.6 7.6 81 14-96 23-111 (159)
107 2li6_A SWI/SNF chromatin-remod 47.2 11 0.00037 28.6 2.5 39 77-115 53-99 (116)
108 2jrz_A Histone demethylase jar 47.1 3.1 0.00011 31.8 -0.6 40 23-62 43-92 (117)
109 2jrz_A Histone demethylase jar 46.8 23 0.00077 26.8 4.3 39 77-115 44-94 (117)
110 1kkx_A Transcription regulator 46.1 17 0.00058 28.0 3.5 41 77-117 52-100 (123)
111 2lm1_A Lysine-specific demethy 45.7 27 0.00092 25.8 4.5 39 77-115 48-98 (107)
112 1c20_A DEAD ringer protein; DN 44.5 3.4 0.00012 32.1 -0.8 41 23-63 55-106 (128)
113 3cz6_A DNA-binding protein RAP 44.1 17 0.00057 29.7 3.2 24 63-86 110-141 (168)
114 2yqf_A Ankyrin-1; death domain 42.3 33 0.0011 25.5 4.5 35 71-106 14-48 (111)
115 3i4p_A Transcriptional regulat 42.2 22 0.00075 27.9 3.7 45 73-118 3-48 (162)
116 2rq5_A Protein jumonji; develo 41.1 29 0.00098 26.6 4.1 77 13-115 6-97 (121)
117 3hug_A RNA polymerase sigma fa 40.8 35 0.0012 23.9 4.3 40 74-114 41-80 (92)
118 2cxy_A BAF250B subunit, HBAF25 40.8 32 0.0011 26.3 4.3 39 77-115 55-105 (125)
119 2eqy_A RBP2 like, jumonji, at 40.6 32 0.0011 26.2 4.3 39 77-115 46-96 (122)
120 2jvw_A Uncharacterized protein 40.3 10 0.00035 27.5 1.2 45 22-79 18-69 (88)
121 1c20_A DEAD ringer protein; DN 39.3 35 0.0012 26.1 4.4 39 77-115 56-107 (128)
122 2of5_H Leucine-rich repeat and 36.5 36 0.0012 25.6 4.0 31 75-106 13-43 (118)
123 2kk0_A AT-rich interactive dom 36.0 37 0.0013 26.7 4.1 39 77-115 68-119 (145)
124 2of5_A Death domain-containing 35.7 40 0.0014 25.4 4.1 38 65-106 17-54 (114)
125 2o71_A Death domain-containing 35.1 42 0.0014 25.4 4.1 29 77-106 26-54 (115)
126 1k78_A Paired box protein PAX5 35.0 94 0.0032 23.4 6.3 81 14-96 30-118 (149)
127 2kk0_A AT-rich interactive dom 34.5 14 0.0005 29.1 1.4 53 23-75 67-132 (145)
128 1x3u_A Transcriptional regulat 34.1 68 0.0023 21.3 4.8 42 70-114 17-58 (79)
129 3cz6_A DNA-binding protein RAP 33.5 27 0.00094 28.4 2.9 22 13-34 113-142 (168)
130 3ulq_B Transcriptional regulat 32.5 77 0.0026 22.4 5.1 46 67-115 27-72 (90)
131 2jxj_A Histone demethylase jar 32.5 24 0.00083 25.5 2.3 39 77-115 40-90 (96)
132 3e7l_A Transcriptional regulat 31.6 64 0.0022 21.1 4.2 33 73-106 19-51 (63)
133 1or7_A Sigma-24, RNA polymeras 30.4 70 0.0024 24.8 5.0 29 85-114 155-183 (194)
134 2dbb_A Putative HTH-type trans 30.1 86 0.003 23.8 5.4 45 73-118 9-54 (151)
135 1tty_A Sigma-A, RNA polymerase 29.9 68 0.0023 22.2 4.4 43 71-115 20-66 (87)
136 1ntc_A Protein (nitrogen regul 28.9 86 0.0029 22.1 4.8 35 72-107 50-84 (91)
137 1wxp_A THO complex subunit 1; 28.7 62 0.0021 23.9 4.1 31 75-106 18-48 (110)
138 3c57_A Two component transcrip 28.5 82 0.0028 22.2 4.6 44 69-115 27-70 (95)
139 1je8_A Nitrate/nitrite respons 28.5 81 0.0028 21.6 4.5 43 69-114 21-63 (82)
140 1fse_A GERE; helix-turn-helix 28.1 1.1E+02 0.0037 19.8 5.0 44 68-114 10-53 (74)
141 2q1z_A RPOE, ECF SIGE; ECF sig 27.3 46 0.0016 25.7 3.3 30 85-115 150-179 (184)
142 2p1m_A SKP1-like protein 1A; F 26.2 22 0.00075 28.2 1.2 35 38-80 119-153 (160)
143 2e1c_A Putative HTH-type trans 26.1 79 0.0027 25.0 4.6 46 72-118 26-72 (171)
144 1xsv_A Hypothetical UPF0122 pr 25.4 1.1E+02 0.0039 22.4 5.1 39 75-114 30-68 (113)
145 2lkq_A Immunoglobulin lambda-l 24.9 9.2 0.00031 20.9 -0.9 18 51-71 3-20 (26)
146 1hlv_A CENP-B, major centromer 24.7 68 0.0023 23.6 3.7 91 13-113 4-109 (131)
147 3i4p_A Transcriptional regulat 24.4 12 0.0004 29.6 -0.8 40 20-61 3-42 (162)
148 2cyy_A Putative HTH-type trans 23.6 1E+02 0.0035 23.4 4.7 45 73-118 7-52 (151)
149 2jpc_A SSRB; DNA binding prote 23.3 1.2E+02 0.004 18.9 4.3 38 76-115 4-41 (61)
150 1rp3_A RNA polymerase sigma fa 22.7 1.1E+02 0.0039 24.3 5.0 33 81-114 198-230 (239)
151 1tc3_C Protein (TC3 transposas 21.3 1.3E+02 0.0043 17.2 4.4 38 69-108 5-42 (51)
152 3mzy_A RNA polymerase sigma-H 21.2 1E+02 0.0034 22.9 4.2 30 84-114 122-151 (164)
No 1
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=5.3e-37 Score=255.65 Aligned_cols=138 Identities=36% Similarity=0.636 Sum_probs=91.7
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCccCCCCHHHHHHHHHHHHhcCC-ch
Q 024860 11 GLKKGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKSCRLRWMNYLRPNIKRGNYTKEEEDTIIRLHESLGN-RW 89 (261)
Q Consensus 11 ~lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~qcr~Rw~~~L~p~i~k~~WT~EED~~L~~~~~~~G~-~W 89 (261)
++++++||+|||++|+++|.+||..+|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 47899999999999999999999889999999998 99999999999999999999999999999999999999995 79
Q ss_pred hHhhhcCCCCCHHHHHHHHHHhhhhhhhhCCCCC-----------------CCCCCCCCCCCCccccCCCCCCCccc
Q 024860 90 SAIAAQLPGRTDNEIKNHWHTSLKKRLKRNSITN-----------------TNGAKDTPKRKDPEIYNHDDTEANPV 149 (261)
Q Consensus 90 ~~Ia~~l~gRt~~~~r~Rw~~~lk~~~k~~~~s~-----------------~~~~~~~~~r~~~~i~n~~~~~~~~~ 149 (261)
..||..|+|||+++|++||.++|.+.+++++|+. ..+++.+++|++++++|+|...+++.
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999997 45678999999999999998877653
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=2.7e-35 Score=238.24 Aligned_cols=109 Identities=42% Similarity=0.769 Sum_probs=105.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCccCCCCHHHHHHHHHHHHhcCCchhHhh
Q 024860 14 KGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKSCRLRWMNYLRPNIKRGNYTKEEEDTIIRLHESLGNRWSAIA 93 (261)
Q Consensus 14 k~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~qcr~Rw~~~L~p~i~k~~WT~EED~~L~~~~~~~G~~W~~Ia 93 (261)
||+||+|||++|+.+|.+||.++|..||+.|+ +|++.||++||.++|+|.+++|+||+|||++|+++|.+||++|+.||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 79999999999999999999889999999998 99999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHhhhhhhhhCCCCC
Q 024860 94 AQLPGRTDNEIKNHWHTSLKKRLKRNSITN 123 (261)
Q Consensus 94 ~~l~gRt~~~~r~Rw~~~lk~~~k~~~~s~ 123 (261)
+.|+|||+++|++||+++|++.+..+.++.
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~ 110 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSNHK 110 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTTSC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCCcc
Confidence 999999999999999999999998887764
No 3
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=1.8e-35 Score=230.32 Aligned_cols=105 Identities=48% Similarity=0.933 Sum_probs=99.9
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCccCCCCHHHHHHHHHHHHhcCCchh
Q 024860 11 GLKKGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKSCRLRWMNYLRPNIKRGNYTKEEEDTIIRLHESLGNRWS 90 (261)
Q Consensus 11 ~lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~qcr~Rw~~~L~p~i~k~~WT~EED~~L~~~~~~~G~~W~ 90 (261)
++++|+||+|||++|+++|.+||..+|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|++++.+||++|+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 47899999999999999999999989999999998 99999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCHHHHHHHHHHhhhhhh
Q 024860 91 AIAAQLPGRTDNEIKNHWHTSLKKRL 116 (261)
Q Consensus 91 ~Ia~~l~gRt~~~~r~Rw~~~lk~~~ 116 (261)
.||+.|||||+++|++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998753
No 4
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=3.3e-35 Score=229.93 Aligned_cols=104 Identities=32% Similarity=0.621 Sum_probs=100.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCccCCCCHHHHHHHHHHHHhcCCchhHhh
Q 024860 14 KGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKSCRLRWMNYLRPNIKRGNYTKEEEDTIIRLHESLGNRWSAIA 93 (261)
Q Consensus 14 k~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~qcr~Rw~~~L~p~i~k~~WT~EED~~L~~~~~~~G~~W~~Ia 93 (261)
||+||+|||++|+.+|.+||..+|..||..|+ +|+++||++||.++|+|.+++|+||+|||++|+++|.+||++|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999989999999999 99999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHhhhhhhhh
Q 024860 94 AQLPGRTDNEIKNHWHTSLKKRLKR 118 (261)
Q Consensus 94 ~~l~gRt~~~~r~Rw~~~lk~~~k~ 118 (261)
+.|+|||+++|++||+.++++..+.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999887654
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=1.5e-34 Score=232.76 Aligned_cols=111 Identities=44% Similarity=0.872 Sum_probs=103.0
Q ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCccCCCCHHHHHHHHHHHHh
Q 024860 5 PCCDKTGLKKGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKSCRLRWMNYLRPNIKRGNYTKEEEDTIIRLHES 84 (261)
Q Consensus 5 p~~~k~~lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~qcr~Rw~~~L~p~i~k~~WT~EED~~L~~~~~~ 84 (261)
-...+|++++|+||+|||++|+++|.+||..+|..||+.|+ +|++.||++||.++|+|.+++++||+|||++|++++.+
T Consensus 18 ~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~ 96 (128)
T 1h8a_C 18 QKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKR 96 (128)
T ss_dssp ----CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHH
T ss_pred HHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHH
Confidence 34467899999999999999999999999989999999998 99999999999999999999999999999999999999
Q ss_pred cCCchhHhhhcCCCCCHHHHHHHHHHhhhhhh
Q 024860 85 LGNRWSAIAAQLPGRTDNEIKNHWHTSLKKRL 116 (261)
Q Consensus 85 ~G~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~~ 116 (261)
||++|+.||+.|||||+++|++||+.++++++
T Consensus 97 ~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 97 LGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp HCSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred HCcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999998753
No 6
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=2.4e-34 Score=231.26 Aligned_cols=106 Identities=37% Similarity=0.658 Sum_probs=101.7
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCccCCCCHHHHHHHHHHHHhcCC
Q 024860 8 DKTGLKKGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKSCRLRWMNYLRPNIKRGNYTKEEEDTIIRLHESLGN 87 (261)
Q Consensus 8 ~k~~lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~qcr~Rw~~~L~p~i~k~~WT~EED~~L~~~~~~~G~ 87 (261)
.+++.++|+||+|||++|+++|.+||. +|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 357899999999999999999999999 9999999998 99999999999999999999999999999999999999999
Q ss_pred chhHhhhcCCCCCHHHHHHHHHHhhhhh
Q 024860 88 RWSAIAAQLPGRTDNEIKNHWHTSLKKR 115 (261)
Q Consensus 88 ~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~ 115 (261)
+|+.||+.|+|||+++|++||..++++.
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988774
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=4.8e-32 Score=225.69 Aligned_cols=108 Identities=46% Similarity=0.898 Sum_probs=103.2
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCccCCCCHHHHHHHHHHHHhcCC
Q 024860 8 DKTGLKKGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKSCRLRWMNYLRPNIKRGNYTKEEEDTIIRLHESLGN 87 (261)
Q Consensus 8 ~k~~lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~qcr~Rw~~~L~p~i~k~~WT~EED~~L~~~~~~~G~ 87 (261)
.+|++++++||+|||++|+.+|.+||..+|..||+.|+ +|++.||+.||.++|+|.+++++||+|||++|++++.+||+
T Consensus 52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence 56889999999999999999999999888999999998 99999999999999999999999999999999999999999
Q ss_pred chhHhhhcCCCCCHHHHHHHHHHhhhhhh
Q 024860 88 RWSAIAAQLPGRTDNEIKNHWHTSLKKRL 116 (261)
Q Consensus 88 ~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~~ 116 (261)
+|+.||+.|||||+++|++||+.++++++
T Consensus 131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 131 RWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999998753
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.93 E-value=7.1e-28 Score=193.77 Aligned_cols=109 Identities=31% Similarity=0.581 Sum_probs=81.5
Q ss_pred ccccccccccccccccccccccCCCCccCCCCHHHHHHHHHHHHhcCC-chhHhhhcCCCCCHHHHHHHHHHhhhhhhhh
Q 024860 40 LPKYAGLARCGKSCRLRWMNYLRPNIKRGNYTKEEEDTIIRLHESLGN-RWSAIAAQLPGRTDNEIKNHWHTSLKKRLKR 118 (261)
Q Consensus 40 Ia~~~~~~R~~~qcr~Rw~~~L~p~i~k~~WT~EED~~L~~~~~~~G~-~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~~k~ 118 (261)
||+.|+ +|++.||++||.++|+|.+++|+||+|||++|+++|++||. +|..||..|+|||+.||++||+++|.+.+++
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 688888 99999999999999999999999999999999999999994 7999999999999999999999999999999
Q ss_pred CCCCC-----------------CCCCCCCCCCCCccccCCCCCCCccc
Q 024860 119 NSITN-----------------TNGAKDTPKRKDPEIYNHDDTEANPV 149 (261)
Q Consensus 119 ~~~s~-----------------~~~~~~~~~r~~~~i~n~~~~~~~~~ 149 (261)
++|+. ..+++.+++|++++++++|...+++.
T Consensus 80 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred ccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99997 45677899999999999998777653
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.4e-23 Score=150.59 Aligned_cols=66 Identities=30% Similarity=0.644 Sum_probs=63.8
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCccCCCCHHHH
Q 024860 9 KTGLKKGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKSCRLRWMNYLRPNIKRGNYTKEEE 75 (261)
Q Consensus 9 k~~lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~qcr~Rw~~~L~p~i~k~~WT~EED 75 (261)
.+++++++||+|||++|+++|.+||..+|..||+.|+ +|+++|||+||.++|+|.+++++||+|||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4789999999999999999999999889999999999 99999999999999999999999999997
No 10
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.3e-19 Score=129.64 Aligned_cols=65 Identities=22% Similarity=0.401 Sum_probs=61.6
Q ss_pred CCCCccCCCCHHHHHHHHHHHHhcC-CchhHhhhcCCCCCHHHHHHHHHHhhhhhhhhCCCCCCCC
Q 024860 62 RPNIKRGNYTKEEEDTIIRLHESLG-NRWSAIAAQLPGRTDNEIKNHWHTSLKKRLKRNSITNTNG 126 (261)
Q Consensus 62 ~p~i~k~~WT~EED~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~~k~~~~s~~~~ 126 (261)
.|.+++++||+|||++|+++|.+|| ++|..||..|+|||++|||+||+++|++.+++++|+..++
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4789999999999999999999999 8999999999999999999999999999999999997654
No 11
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.77 E-value=1.9e-19 Score=156.81 Aligned_cols=105 Identities=20% Similarity=0.353 Sum_probs=92.3
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCC-----cccccccccccccccccccccccccCCCCc------------------
Q 024860 10 TGLKKGTWTPEEDRKLIAYVTKYGYWN-----WRQLPKYAGLARCGKSCRLRWMNYLRPNIK------------------ 66 (261)
Q Consensus 10 ~~lkk~~WT~eED~~L~~~V~~~g~~~-----W~~Ia~~~~~~R~~~qcr~Rw~~~L~p~i~------------------ 66 (261)
..+++++||+|||++|+++|.+||... |.+||++|+ |||+.|||.||.++|.+++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn 82 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN 82 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence 567899999999999999999998742 999999999 99999999999999999986
Q ss_pred -----------cCCCCHHHHHHHHHHHHh-c-------------------------------------------------
Q 024860 67 -----------RGNYTKEEEDTIIRLHES-L------------------------------------------------- 85 (261)
Q Consensus 67 -----------k~~WT~EED~~L~~~~~~-~------------------------------------------------- 85 (261)
+..||.|||-.|...+.+ +
T Consensus 83 ~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 162 (246)
T 1ign_A 83 LIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRT 162 (246)
T ss_dssp BCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CC
T ss_pred ceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcc
Confidence 899999999999998876 1
Q ss_pred ----CC----chhHhhhcCCCCCHHHHHHHHHHhhhhh
Q 024860 86 ----GN----RWSAIAAQLPGRTDNEIKNHWHTSLKKR 115 (261)
Q Consensus 86 ----G~----~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~ 115 (261)
|. .|..||+.+|+||.+++|+||+.+|+..
T Consensus 163 ~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 163 QSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred ccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 11 6999999999999999999999988765
No 12
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-19 Score=131.46 Aligned_cols=57 Identities=26% Similarity=0.439 Sum_probs=46.5
Q ss_pred ccccccccCCCCccCCCCHHHHHHHHHHHHhcCCchhHhhhcCCCCCHHHHHHHHHHh
Q 024860 54 RLRWMNYLRPNIKRGNYTKEEEDTIIRLHESLGNRWSAIAAQLPGRTDNEIKNHWHTS 111 (261)
Q Consensus 54 r~Rw~~~L~p~i~k~~WT~EED~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~r~Rw~~~ 111 (261)
--||.++|+|++++++||+|||++|++++.+||++|+.||+.| |||+++||+||+.+
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999 99999999999754
No 13
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=6.7e-19 Score=125.75 Aligned_cols=60 Identities=27% Similarity=0.489 Sum_probs=57.8
Q ss_pred ccCCCCccCCCCHHHHHHHHHHHHhcCCchhHhhhcCCCCCHHHHHHHHHHhhhhhhhhCC
Q 024860 60 YLRPNIKRGNYTKEEEDTIIRLHESLGNRWSAIAAQLPGRTDNEIKNHWHTSLKKRLKRNS 120 (261)
Q Consensus 60 ~L~p~i~k~~WT~EED~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~~k~~~ 120 (261)
+|+|.+++++||+|||++|+++|+.||.+|..||+ ++|||++|||+||+++|++.+++..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 79999999999999999999999999999999999 8899999999999999999998765
No 14
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.74 E-value=1.9e-19 Score=139.58 Aligned_cols=85 Identities=35% Similarity=0.613 Sum_probs=77.2
Q ss_pred CCccCCCCHHHHHHHHHHHHhcCC-chhHhhhcCCCCCHHHHHHHHHHhhhhhhhhCCCCC-----------------CC
Q 024860 64 NIKRGNYTKEEEDTIIRLHESLGN-RWSAIAAQLPGRTDNEIKNHWHTSLKKRLKRNSITN-----------------TN 125 (261)
Q Consensus 64 ~i~k~~WT~EED~~L~~~~~~~G~-~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~~k~~~~s~-----------------~~ 125 (261)
++++|+||+|||++|+++|++||. +|..||+.|+|||+.||+.||.++|.|.+++++|+. ..
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 80 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 80 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence 478999999999999999999995 799999999999999999999999999999999997 45
Q ss_pred CCCCCCCCCCccccCCCCCCCcc
Q 024860 126 GAKDTPKRKDPEIYNHDDTEANP 148 (261)
Q Consensus 126 ~~~~~~~r~~~~i~n~~~~~~~~ 148 (261)
++..+++|++++++++|...+++
T Consensus 81 Ia~~l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 81 IAKLLPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp HHTTCTTCCHHHHHHHHHHHTC-
T ss_pred HHHHcCCCCHHHHHHHHHHHHhc
Confidence 67789999999999998766554
No 15
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.74 E-value=3.4e-19 Score=141.31 Aligned_cols=84 Identities=17% Similarity=0.241 Sum_probs=78.1
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccc---ccccccccccccccccC-----CCCccC-CCCHHHHHHH
Q 024860 8 DKTGLKKGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAG---LARCGKSCRLRWMNYLR-----PNIKRG-NYTKEEEDTI 78 (261)
Q Consensus 8 ~k~~lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~---~~R~~~qcr~Rw~~~L~-----p~i~k~-~WT~EED~~L 78 (261)
.++..++++||+|||+.|+++|++||.++|..|++.++ .+||++||++||+++++ |.++++ +|++||+++|
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 35688999999999999999999999999999999851 28999999999999998 999999 9999999999
Q ss_pred HHHHHhcCCchhH
Q 024860 79 IRLHESLGNRWSA 91 (261)
Q Consensus 79 ~~~~~~~G~~W~~ 91 (261)
+.++..+|++|++
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 9999999999987
No 16
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.73 E-value=2.8e-19 Score=143.22 Aligned_cols=88 Identities=27% Similarity=0.393 Sum_probs=80.2
Q ss_pred CCCCccCCCCHHHHHHHHHHHHhcCCchhHhhhcCCCCCHHHHHHHHHHhhhhhhhhCCCCC-----------------C
Q 024860 62 RPNIKRGNYTKEEEDTIIRLHESLGNRWSAIAAQLPGRTDNEIKNHWHTSLKKRLKRNSITN-----------------T 124 (261)
Q Consensus 62 ~p~i~k~~WT~EED~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~~k~~~~s~-----------------~ 124 (261)
.+..++|+||+|||++|+++|..||.+|..||+.|+||++.||+.||+++|.+.++++.|+. .
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~ 85 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA 85 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence 45788999999999999999999999999999999999999999999999999999999997 4
Q ss_pred CCCCCCCCCCCccccCCCCCCCccc
Q 024860 125 NGAKDTPKRKDPEIYNHDDTEANPV 149 (261)
Q Consensus 125 ~~~~~~~~r~~~~i~n~~~~~~~~~ 149 (261)
.+++.+++|++++++++|...+++.
T Consensus 86 ~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 86 IIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 5578899999999999997766553
No 17
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=2.9e-18 Score=120.16 Aligned_cols=56 Identities=23% Similarity=0.490 Sum_probs=53.1
Q ss_pred CCCCccCCCCHHHHHHHHHHHHhcC-CchhHhhhcCCCCCHHHHHHHHHHhhhhhhh
Q 024860 62 RPNIKRGNYTKEEEDTIIRLHESLG-NRWSAIAAQLPGRTDNEIKNHWHTSLKKRLK 117 (261)
Q Consensus 62 ~p~i~k~~WT~EED~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~~k 117 (261)
+|.+++++||+|||++|+++|.+|| ++|+.||+.|+|||+.|||+||+++|++.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5789999999999999999999999 6999999999999999999999999998764
No 18
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.72 E-value=1e-17 Score=121.59 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=56.0
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHhcCCchhHhhhcCCCCCHHHHHHHHHHhhhhhhhh
Q 024860 61 LRPNIKRGNYTKEEEDTIIRLHESLGNRWSAIAAQLPGRTDNEIKNHWHTSLKKRLKR 118 (261)
Q Consensus 61 L~p~i~k~~WT~EED~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~~k~ 118 (261)
++|.+++++||+|||++|+++|++||.+|..||+.|+|||++|||+||+++|++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999998876
No 19
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=1.5e-18 Score=121.54 Aligned_cols=57 Identities=30% Similarity=0.560 Sum_probs=54.3
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCc
Q 024860 9 KTGLKKGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKSCRLRWMNYLRPNIK 66 (261)
Q Consensus 9 k~~lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~qcr~Rw~~~L~p~i~ 66 (261)
.+++++++||+|||++|+++|.+||..+|..||+.|+ +|++.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 4789999999999999999999999889999999998 99999999999999999975
No 20
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.71 E-value=1.8e-18 Score=117.79 Aligned_cols=52 Identities=50% Similarity=0.898 Sum_probs=49.8
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCC
Q 024860 12 LKKGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKSCRLRWMNYLRPN 64 (261)
Q Consensus 12 lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~qcr~Rw~~~L~p~ 64 (261)
|++|+||+|||++|+++|.+||..+|..||+.|+ +|+++||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999888999999998 999999999999999985
No 21
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.71 E-value=2.7e-18 Score=136.35 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=73.2
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccc---cccccccccccccccc-----CCCCccCCCCHHH-HHHHH
Q 024860 9 KTGLKKGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAG---LARCGKSCRLRWMNYL-----RPNIKRGNYTKEE-EDTII 79 (261)
Q Consensus 9 k~~lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~---~~R~~~qcr~Rw~~~L-----~p~i~k~~WT~EE-D~~L~ 79 (261)
+...++++||+|||+.|+++|++||.++|..|++... .+||++||++||+|++ +|.++++.|+++| +++|+
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 4567889999999999999999999999999998641 3899999999999999 8999999999999 89999
Q ss_pred HHHHhcCCc
Q 024860 80 RLHESLGNR 88 (261)
Q Consensus 80 ~~~~~~G~~ 88 (261)
.+++.+|++
T Consensus 106 ~~h~~~g~~ 114 (122)
T 2roh_A 106 AAQAYWSVD 114 (122)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhhH
Confidence 999999975
No 22
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.71 E-value=3.7e-18 Score=137.52 Aligned_cols=86 Identities=24% Similarity=0.423 Sum_probs=79.5
Q ss_pred cCCCCHHHHHHHHHHHHhcC-CchhHhhhcCCCCCHHHHHHHHHHhhhhhhhhCCCCC-----------------CCCCC
Q 024860 67 RGNYTKEEEDTIIRLHESLG-NRWSAIAAQLPGRTDNEIKNHWHTSLKKRLKRNSITN-----------------TNGAK 128 (261)
Q Consensus 67 k~~WT~EED~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~~k~~~~s~-----------------~~~~~ 128 (261)
+|+||+|||++|+++|..|| ++|..||..|+|||+.||+.||.++|.+.++++.|+. ..++.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~ 81 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK 81 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 79999999999999999999 7899999999999999999999999999999999997 55688
Q ss_pred CCCCCCCccccCCCCCCCcccccc
Q 024860 129 DTPKRKDPEIYNHDDTEANPVQES 152 (261)
Q Consensus 129 ~~~~r~~~~i~n~~~~~~~~~~~~ 152 (261)
.+++|++++++++|...+++....
T Consensus 82 ~l~gRt~~~~k~rw~~~l~~~~~~ 105 (131)
T 3zqc_A 82 LIPGRTDNAIKNRWNSSISKRIST 105 (131)
T ss_dssp TSTTCCHHHHHHHHHHTTGGGCCC
T ss_pred HcCCCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999998888776543
No 23
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.70 E-value=2.1e-17 Score=118.99 Aligned_cols=62 Identities=24% Similarity=0.326 Sum_probs=56.8
Q ss_pred ccCCCCccCCCCHHHHHHHHHHHHhcC-CchhHhhhcCC--CCCHHHHHHHHHHhhhhhhhhCCC
Q 024860 60 YLRPNIKRGNYTKEEEDTIIRLHESLG-NRWSAIAAQLP--GRTDNEIKNHWHTSLKKRLKRNSI 121 (261)
Q Consensus 60 ~L~p~i~k~~WT~EED~~L~~~~~~~G-~~W~~Ia~~l~--gRt~~~~r~Rw~~~lk~~~k~~~~ 121 (261)
...+..++++||+|||++|+++|++|| ++|+.||..|+ |||++|||+||+++|++.+.+...
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~ 67 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS 67 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence 356778899999999999999999999 79999999999 999999999999999999877643
No 24
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.70 E-value=1.7e-17 Score=112.85 Aligned_cols=50 Identities=32% Similarity=0.678 Sum_probs=46.7
Q ss_pred CccCCCCHHHHHHHHHHHHhcCC-chhHhhhcCCCCCHHHHHHHHHHhhhh
Q 024860 65 IKRGNYTKEEEDTIIRLHESLGN-RWSAIAAQLPGRTDNEIKNHWHTSLKK 114 (261)
Q Consensus 65 i~k~~WT~EED~~L~~~~~~~G~-~W~~Ia~~l~gRt~~~~r~Rw~~~lk~ 114 (261)
+++++||+|||++|+++|.+||. +|+.||+.|+|||+.||++||+++|+|
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999996 999999999999999999999999987
No 25
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.69 E-value=3.1e-18 Score=116.54 Aligned_cols=52 Identities=37% Similarity=0.712 Sum_probs=48.6
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCC
Q 024860 12 LKKGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKSCRLRWMNYLRPN 64 (261)
Q Consensus 12 lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~qcr~Rw~~~L~p~ 64 (261)
+++++||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5789999999999999999999989999999998 999999999999999985
No 26
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.69 E-value=2.2e-17 Score=112.35 Aligned_cols=50 Identities=38% Similarity=0.809 Sum_probs=47.7
Q ss_pred CccCCCCHHHHHHHHHHHHhcCC-chhHhhhcCCCCCHHHHHHHHHHhhhh
Q 024860 65 IKRGNYTKEEEDTIIRLHESLGN-RWSAIAAQLPGRTDNEIKNHWHTSLKK 114 (261)
Q Consensus 65 i~k~~WT~EED~~L~~~~~~~G~-~W~~Ia~~l~gRt~~~~r~Rw~~~lk~ 114 (261)
+++++||+|||++|+++|.+||. +|..||+.|+|||++|||+||.++|+|
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999996 799999999999999999999999987
No 27
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.69 E-value=5.1e-18 Score=122.20 Aligned_cols=64 Identities=23% Similarity=0.372 Sum_probs=59.0
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccc-cccccccccccccccCCCCccCCCC
Q 024860 8 DKTGLKKGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGL-ARCGKSCRLRWMNYLRPNIKRGNYT 71 (261)
Q Consensus 8 ~k~~lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~-~R~~~qcr~Rw~~~L~p~i~k~~WT 71 (261)
.++..++++||+|||++|+++|.+||.++|..||+.++. +|+++||++||.++|+|.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 456788999999999999999999998899999999976 8999999999999999999988764
No 28
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.68 E-value=1.1e-18 Score=135.94 Aligned_cols=83 Identities=19% Similarity=0.291 Sum_probs=74.6
Q ss_pred cCCCCHHHHHHHHHHHHhcC-CchhHhhhcCCCCCHHHHHHHHHHhhhhhhhhCCCCC-----------------CCCCC
Q 024860 67 RGNYTKEEEDTIIRLHESLG-NRWSAIAAQLPGRTDNEIKNHWHTSLKKRLKRNSITN-----------------TNGAK 128 (261)
Q Consensus 67 k~~WT~EED~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~~k~~~~s~-----------------~~~~~ 128 (261)
||+||+|||++|+++|..|| ++|..||..|+|||+.||+.||.++|.+.+++++|+. ..+++
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 68999999999999999999 4899999999999999999999999999999999997 34456
Q ss_pred CCCCCCCccccCCCCCCCccc
Q 024860 129 DTPKRKDPEIYNHDDTEANPV 149 (261)
Q Consensus 129 ~~~~r~~~~i~n~~~~~~~~~ 149 (261)
.+++|++++++++|...+++.
T Consensus 81 ~l~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 81 FLKNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp HHSSSCHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHhhH
Confidence 789999999999987665543
No 29
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.65 E-value=1.2e-16 Score=109.16 Aligned_cols=49 Identities=29% Similarity=0.438 Sum_probs=46.6
Q ss_pred ccCCCCHHHHHHHHHHHHhcC-CchhHhhhcCC--CCCHHHHHHHHHHhhhh
Q 024860 66 KRGNYTKEEEDTIIRLHESLG-NRWSAIAAQLP--GRTDNEIKNHWHTSLKK 114 (261)
Q Consensus 66 ~k~~WT~EED~~L~~~~~~~G-~~W~~Ia~~l~--gRt~~~~r~Rw~~~lk~ 114 (261)
++++||+|||++|+++|.+|| ++|+.||..|+ |||++||++||+++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 579999999999999999999 79999999999 99999999999999875
No 30
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=1.2e-16 Score=111.90 Aligned_cols=54 Identities=19% Similarity=0.334 Sum_probs=50.6
Q ss_pred CCCCccCCCCHHHHHHHHHHHHhcC-CchhHhhhcCCCCCHHHHHHHHHHhhhhh
Q 024860 62 RPNIKRGNYTKEEEDTIIRLHESLG-NRWSAIAAQLPGRTDNEIKNHWHTSLKKR 115 (261)
Q Consensus 62 ~p~i~k~~WT~EED~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~ 115 (261)
.+.+.+++||+|||++|+++|++|| ++|..||+.|+|||++|||+||+++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 4678999999999999999999999 89999999999999999999999998753
No 31
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.64 E-value=1.7e-16 Score=112.75 Aligned_cols=52 Identities=29% Similarity=0.512 Sum_probs=47.8
Q ss_pred CccCCCCHHHHHHHHHHHHhcC-CchhHhhhcCC--CCCHHHHHHHHHHhhhhhh
Q 024860 65 IKRGNYTKEEEDTIIRLHESLG-NRWSAIAAQLP--GRTDNEIKNHWHTSLKKRL 116 (261)
Q Consensus 65 i~k~~WT~EED~~L~~~~~~~G-~~W~~Ia~~l~--gRt~~~~r~Rw~~~lk~~~ 116 (261)
.++++||+|||++|+++|++|| ++|+.||+.++ |||+.|||+||++++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4789999999999999999999 69999999865 9999999999999999875
No 32
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.64 E-value=3.1e-17 Score=116.56 Aligned_cols=56 Identities=32% Similarity=0.431 Sum_probs=49.8
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccc-ccccccccccccccccCCCCc
Q 024860 11 GLKKGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAG-LARCGKSCRLRWMNYLRPNIK 66 (261)
Q Consensus 11 ~lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~-~~R~~~qcr~Rw~~~L~p~i~ 66 (261)
..+|++||+|||++|+++|.+||.++|.+||+.++ .+|+++||++||.|+++|+++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 45789999999999999999999989999999754 389999999999999998874
No 33
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.7e-16 Score=115.88 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=55.3
Q ss_pred CCCCccCCCCHHHHHHHHHHHHhcC------CchhHhhhcCCCCCHHHHHHHHHHhhhhhhhhCC
Q 024860 62 RPNIKRGNYTKEEEDTIIRLHESLG------NRWSAIAAQLPGRTDNEIKNHWHTSLKKRLKRNS 120 (261)
Q Consensus 62 ~p~i~k~~WT~EED~~L~~~~~~~G------~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~~k~~~ 120 (261)
+|.+.+++||+|||++|+++|.+|| ++|..||+.|+|||++||++||+++|++.++.+.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999999999 6899999999999999999999999999887664
No 34
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=6.2e-17 Score=113.45 Aligned_cols=55 Identities=20% Similarity=0.506 Sum_probs=51.7
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCC
Q 024860 9 KTGLKKGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKSCRLRWMNYLRPN 64 (261)
Q Consensus 9 k~~lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~qcr~Rw~~~L~p~ 64 (261)
.+.+.+++||+|||++|+++|.+||.++|.+||+.|+ +|+++||++||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 3678999999999999999999999779999999999 999999999999999765
No 35
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.59 E-value=1.5e-15 Score=105.76 Aligned_cols=50 Identities=28% Similarity=0.466 Sum_probs=46.7
Q ss_pred CCCccCCCCHHHHHHHHHHHHhcC-CchhHhhhcCC-CCCHHHHHHHHHHhh
Q 024860 63 PNIKRGNYTKEEEDTIIRLHESLG-NRWSAIAAQLP-GRTDNEIKNHWHTSL 112 (261)
Q Consensus 63 p~i~k~~WT~EED~~L~~~~~~~G-~~W~~Ia~~l~-gRt~~~~r~Rw~~~l 112 (261)
..+.+++||+|||++|+++|++|| ++|..||++|+ |||++|||+||++++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999999 89999999999 999999999999875
No 36
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=9.7e-17 Score=114.44 Aligned_cols=59 Identities=22% Similarity=0.385 Sum_probs=54.0
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCccCC
Q 024860 8 DKTGLKKGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKSCRLRWMNYLRPNIKRGN 69 (261)
Q Consensus 8 ~k~~lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~qcr~Rw~~~L~p~i~k~~ 69 (261)
..|.+++++||+|||++|+++|..||. +|..||+ ++ +|+++||+.||.++|+|.++++.
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence 468899999999999999999999999 9999999 66 79999999999999998877653
No 37
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.9e-16 Score=115.64 Aligned_cols=61 Identities=25% Similarity=0.375 Sum_probs=56.2
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCC-----CCcccccccccccccccccccccccccCCCCccCC
Q 024860 8 DKTGLKKGTWTPEEDRKLIAYVTKYGY-----WNWRQLPKYAGLARCGKSCRLRWMNYLRPNIKRGN 69 (261)
Q Consensus 8 ~k~~lkk~~WT~eED~~L~~~V~~~g~-----~~W~~Ia~~~~~~R~~~qcr~Rw~~~L~p~i~k~~ 69 (261)
.++++++++||+|||++|+++|.+||. .+|..||++|+ +|+++||+.||++||.+.++.|.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 368899999999999999999999995 69999999999 99999999999999998877664
No 38
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.58 E-value=3.8e-16 Score=108.73 Aligned_cols=51 Identities=25% Similarity=0.511 Sum_probs=47.5
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 024860 11 GLKKGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKSCRLRWMNYL 61 (261)
Q Consensus 11 ~lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~qcr~Rw~~~L 61 (261)
.+.+++||+|||++|+++|++||.++|.+||+.|+.+|+++||++||.+++
T Consensus 6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 466889999999999999999998899999999987899999999999875
No 39
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.57 E-value=3.3e-16 Score=107.00 Aligned_cols=50 Identities=30% Similarity=0.483 Sum_probs=46.6
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCcccccccccc-cccccccccccccccC
Q 024860 13 KKGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGL-ARCGKSCRLRWMNYLR 62 (261)
Q Consensus 13 kk~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~-~R~~~qcr~Rw~~~L~ 62 (261)
++++||+|||++|+++|.+||.++|..||+.++. +|++.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5799999999999999999998899999999976 6999999999999874
No 40
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.32 E-value=3.2e-16 Score=118.34 Aligned_cols=56 Identities=29% Similarity=0.318 Sum_probs=53.2
Q ss_pred ccCCCCccCCCCHHHHHHHHHHHHhcCCchhHhhhcCCCCCHHHHHHHHHHhhhhh
Q 024860 60 YLRPNIKRGNYTKEEEDTIIRLHESLGNRWSAIAAQLPGRTDNEIKNHWHTSLKKR 115 (261)
Q Consensus 60 ~L~p~i~k~~WT~EED~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~ 115 (261)
.+.|.+++++||+|||++|+++|.+||.+|..||..|+|||++||++||+++|++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 56789999999999999999999999999999999999999999999999998874
No 41
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.52 E-value=1.1e-15 Score=110.90 Aligned_cols=58 Identities=21% Similarity=0.353 Sum_probs=53.8
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCcc
Q 024860 8 DKTGLKKGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKSCRLRWMNYLRPNIKR 67 (261)
Q Consensus 8 ~k~~lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~qcr~Rw~~~L~p~i~k 67 (261)
..|.+++++||+|||++|+++|.+||. +|..||++|+ +|++.||+.||.++|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 357899999999999999999999999 9999999999 999999999999998876655
No 42
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.46 E-value=1.9e-14 Score=111.51 Aligned_cols=79 Identities=20% Similarity=0.274 Sum_probs=68.0
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccc---cccccccccccccccc-----CCCCccCCCCHHHHHH-H
Q 024860 8 DKTGLKKGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAG---LARCGKSCRLRWMNYL-----RPNIKRGNYTKEEEDT-I 78 (261)
Q Consensus 8 ~k~~lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~---~~R~~~qcr~Rw~~~L-----~p~i~k~~WT~EED~~-L 78 (261)
.+...++++||+|||+.|+++|++||.++|..|++.++ .+||+.+|++||.+++ +|.+++|.-+++|-.. +
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 45778999999999999999999999999999999652 3899999999999998 7999999988887765 7
Q ss_pred HHHHHhcC
Q 024860 79 IRLHESLG 86 (261)
Q Consensus 79 ~~~~~~~G 86 (261)
++++..+|
T Consensus 87 ~~~~~~~~ 94 (105)
T 2aje_A 87 LNAHGYWT 94 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777655
No 43
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.46 E-value=6.4e-14 Score=101.82 Aligned_cols=51 Identities=10% Similarity=0.262 Sum_probs=47.3
Q ss_pred CCCccCCCCHHHHHHHHHHHHhcC----CchhHhhhcCCCCCHHHHHHHHHHhhh
Q 024860 63 PNIKRGNYTKEEEDTIIRLHESLG----NRWSAIAAQLPGRTDNEIKNHWHTSLK 113 (261)
Q Consensus 63 p~i~k~~WT~EED~~L~~~~~~~G----~~W~~Ia~~l~gRt~~~~r~Rw~~~lk 113 (261)
+.+.+++||.|||.+|++++..|| ++|.+||+.|||||+++|++||+.++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999999 689999999999999999999998765
No 44
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.46 E-value=2.4e-14 Score=106.56 Aligned_cols=69 Identities=20% Similarity=0.366 Sum_probs=59.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccc----cccccccccccccccccc-----CCCCccC-CCCHHHHHHHHHHHHh
Q 024860 15 GTWTPEEDRKLIAYVTKYGYWNWRQLPKY----AGLARCGKSCRLRWMNYL-----RPNIKRG-NYTKEEEDTIIRLHES 84 (261)
Q Consensus 15 ~~WT~eED~~L~~~V~~~g~~~W~~Ia~~----~~~~R~~~qcr~Rw~~~L-----~p~i~k~-~WT~EED~~L~~~~~~ 84 (261)
++||+|||+.|+++|++||.++|..|++. ++ +||++||++||+|++ +|.+++| +..++..+.++.+++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999999985 66 999999999999987 6777766 5677777888888763
No 45
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.44 E-value=2.4e-14 Score=104.07 Aligned_cols=61 Identities=21% Similarity=0.270 Sum_probs=48.2
Q ss_pred CCCCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCcc
Q 024860 3 RTPCCDKTGLKKGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKSCRLRWMNYLRPNIKR 67 (261)
Q Consensus 3 r~p~~~k~~lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~qcr~Rw~~~L~p~i~k 67 (261)
|.-....|++++++||+|||++|+++|.+||. .|..||+.+ +|++.||+.||.. |....+.
T Consensus 12 ~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 12 ENLYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp -------CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred ceeeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence 33445679999999999999999999999998 699999999 7999999999985 4444443
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.44 E-value=3.8e-14 Score=104.59 Aligned_cols=53 Identities=21% Similarity=0.449 Sum_probs=49.5
Q ss_pred CCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 024860 6 CCDKTGLKKGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKSCRLRWMNY 60 (261)
Q Consensus 6 ~~~k~~lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~qcr~Rw~~~ 60 (261)
.+.+....+++||+|||++|+++|.+|| .+|.+||++|+ +|++.||+.||.++
T Consensus 10 ~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 10 AKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred CCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 4567778899999999999999999999 69999999999 99999999999998
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.41 E-value=1.1e-13 Score=102.03 Aligned_cols=48 Identities=17% Similarity=0.306 Sum_probs=45.2
Q ss_pred CCccCCCCHHHHHHHHHHHHhcCCchhHhhhcCCCCCHHHHHHHHHHh
Q 024860 64 NIKRGNYTKEEEDTIIRLHESLGNRWSAIAAQLPGRTDNEIKNHWHTS 111 (261)
Q Consensus 64 ~i~k~~WT~EED~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~r~Rw~~~ 111 (261)
...+++||+|||++|+++|++||++|..||++|++||+.||++||+++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456899999999999999999999999999999999999999999766
No 48
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.41 E-value=1.9e-13 Score=108.33 Aligned_cols=54 Identities=24% Similarity=0.493 Sum_probs=49.7
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHhcCC-chhHhhhc----CCCCCHHHHHHHHHHhhhh
Q 024860 61 LRPNIKRGNYTKEEEDTIIRLHESLGN-RWSAIAAQ----LPGRTDNEIKNHWHTSLKK 114 (261)
Q Consensus 61 L~p~i~k~~WT~EED~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~r~Rw~~~lk~ 114 (261)
+.+..++++||.|||+.|+++|++||. +|+.|++. |+|||+++||+||+++++.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 556788999999999999999999994 99999997 4899999999999999983
No 49
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.40 E-value=2.2e-13 Score=118.76 Aligned_cols=63 Identities=24% Similarity=0.413 Sum_probs=52.8
Q ss_pred CCCccCCCCHHHHHHHHHHHHhcCCc------hhHhhhcCCCCCHHHHHHHHHHhhhhhhhhCCCCCCCC
Q 024860 63 PNIKRGNYTKEEEDTIIRLHESLGNR------WSAIAAQLPGRTDNEIKNHWHTSLKKRLKRNSITNTNG 126 (261)
Q Consensus 63 p~i~k~~WT~EED~~L~~~~~~~G~~------W~~Ia~~l~gRt~~~~r~Rw~~~lk~~~k~~~~s~~~~ 126 (261)
+.+++++||+|||++|+++|+++|++ |..||+.|+|||+++||+||+++|++++... ++....
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded 72 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKF 72 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcc
Confidence 46789999999999999999999875 9999999999999999999999999998733 554333
No 50
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.40 E-value=3.9e-13 Score=100.01 Aligned_cols=48 Identities=23% Similarity=0.521 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHHhcC-CchhHhhhc----CCCCCHHHHHHHHHHhhhhh
Q 024860 68 GNYTKEEEDTIIRLHESLG-NRWSAIAAQ----LPGRTDNEIKNHWHTSLKKR 115 (261)
Q Consensus 68 ~~WT~EED~~L~~~~~~~G-~~W~~Ia~~----l~gRt~~~~r~Rw~~~lk~~ 115 (261)
++||+|||+.|+++|++|| ++|+.|++. |+|||+++||+||+++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 4799999999999999999 599999986 89999999999999999754
No 51
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.40 E-value=5e-13 Score=103.49 Aligned_cols=53 Identities=23% Similarity=0.455 Sum_probs=48.3
Q ss_pred CCCccCCCCHHHHHHHHHHHHhcC-CchhHhhhcC----CCCCHHHHHHHHHHhhhhh
Q 024860 63 PNIKRGNYTKEEEDTIIRLHESLG-NRWSAIAAQL----PGRTDNEIKNHWHTSLKKR 115 (261)
Q Consensus 63 p~i~k~~WT~EED~~L~~~~~~~G-~~W~~Ia~~l----~gRt~~~~r~Rw~~~lk~~ 115 (261)
+..++++||+|||+.|+++|++|| ++|+.|++.+ +|||+++||+||+++++..
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 457899999999999999999999 5999999965 8999999999999999753
No 52
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.37 E-value=5.5e-13 Score=105.77 Aligned_cols=52 Identities=25% Similarity=0.487 Sum_probs=47.1
Q ss_pred CCCccCCCCHHHHHHHHHHHHhcC-CchhHhhhc----CCCCCHHHHHHHHHHhhhh
Q 024860 63 PNIKRGNYTKEEEDTIIRLHESLG-NRWSAIAAQ----LPGRTDNEIKNHWHTSLKK 114 (261)
Q Consensus 63 p~i~k~~WT~EED~~L~~~~~~~G-~~W~~Ia~~----l~gRt~~~~r~Rw~~~lk~ 114 (261)
...++++||.|||+.|+++|++|| ++|+.|++. |+|||+.+||+||+++++.
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 355789999999999999999999 599999986 3899999999999999953
No 53
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.04 E-value=6.6e-14 Score=105.58 Aligned_cols=54 Identities=22% Similarity=0.439 Sum_probs=50.8
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCC
Q 024860 8 DKTGLKKGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKSCRLRWMNYLRP 63 (261)
Q Consensus 8 ~k~~lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~qcr~Rw~~~L~p 63 (261)
..+++++|+||+|||++|+++|.+||. +|..||+.|+ +||+.||+.||.++|..
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 568899999999999999999999999 8999999999 99999999999998863
No 54
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.35 E-value=1.1e-12 Score=91.59 Aligned_cols=49 Identities=24% Similarity=0.512 Sum_probs=45.5
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCchhHhh---hcCCCCCHHHHHHHHHHhhhh
Q 024860 66 KRGNYTKEEEDTIIRLHESLGNRWSAIA---AQLPGRTDNEIKNHWHTSLKK 114 (261)
Q Consensus 66 ~k~~WT~EED~~L~~~~~~~G~~W~~Ia---~~l~gRt~~~~r~Rw~~~lk~ 114 (261)
++.+||+|||+.|++.|++||.+|+.|+ ..+++||...|++||+++.+.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 6789999999999999999999999999 567999999999999988765
No 55
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.34 E-value=1.8e-13 Score=99.46 Aligned_cols=56 Identities=13% Similarity=0.328 Sum_probs=50.5
Q ss_pred CCCCCCCCcCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccccccC
Q 024860 6 CCDKTGLKKGTWTPEEDRKLIAYVTKYGY---WNWRQLPKYAGLARCGKSCRLRWMNYLR 62 (261)
Q Consensus 6 ~~~k~~lkk~~WT~eED~~L~~~V~~~g~---~~W~~Ia~~~~~~R~~~qcr~Rw~~~L~ 62 (261)
...++.+.+++||+|||++|+.+|.+||. .+|.+||++|| +||++||+.||.+++.
T Consensus 10 ~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 10 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 45678889999999999999999999993 48999999999 9999999999998764
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.25 E-value=6.7e-12 Score=95.22 Aligned_cols=50 Identities=22% Similarity=0.466 Sum_probs=45.5
Q ss_pred ccCCCCHHHHHHHHHHHHhcC----CchhHhhhcCCCCCHHHHHHHHHHhhhhh
Q 024860 66 KRGNYTKEEEDTIIRLHESLG----NRWSAIAAQLPGRTDNEIKNHWHTSLKKR 115 (261)
Q Consensus 66 ~k~~WT~EED~~L~~~~~~~G----~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~ 115 (261)
.+++||.|||++|++++..|| ++|.+||+.|||||+++|++||+.++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 468999999999999999996 67999999999999999999999987663
No 57
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=4.1e-10 Score=78.83 Aligned_cols=48 Identities=13% Similarity=0.061 Sum_probs=44.1
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCchhHhhhcCCCCCHHHHHHHHHHhhh
Q 024860 66 KRGNYTKEEEDTIIRLHESLGNRWSAIAAQLPGRTDNEIKNHWHTSLK 113 (261)
Q Consensus 66 ~k~~WT~EED~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~r~Rw~~~lk 113 (261)
..++||+||++++++++..||.+|..||..|++||..+|+.+|....+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999999999999999999999999976543
No 58
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.02 E-value=3.6e-11 Score=91.15 Aligned_cols=47 Identities=11% Similarity=0.309 Sum_probs=43.1
Q ss_pred cCCCCHHHHHHHHHHHHHhC---CCCccccccccccccccccccccccccc
Q 024860 14 KGTWTPEEDRKLIAYVTKYG---YWNWRQLPKYAGLARCGKSCRLRWMNYL 61 (261)
Q Consensus 14 k~~WT~eED~~L~~~V~~~g---~~~W~~Ia~~~~~~R~~~qcr~Rw~~~L 61 (261)
+++||+|||++|++++.+|| ...|..||+.|| +||..||+.||.+++
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 67899999999999999998 347999999999 999999999999864
No 59
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.95 E-value=1e-09 Score=82.91 Aligned_cols=65 Identities=18% Similarity=0.273 Sum_probs=58.8
Q ss_pred cccccccccccCCCCccCCCCHHHHHHHHHHHHhcCCchhHhhhcC-----CCCCHHHHHHHHHHhhhhhhhhC
Q 024860 51 KSCRLRWMNYLRPNIKRGNYTKEEEDTIIRLHESLGNRWSAIAAQL-----PGRTDNEIKNHWHTSLKKRLKRN 119 (261)
Q Consensus 51 ~qcr~Rw~~~L~p~i~k~~WT~EED~~L~~~~~~~G~~W~~Ia~~l-----~gRt~~~~r~Rw~~~lk~~~k~~ 119 (261)
.=+.++|.++|.+ ++||.||+..|++++++||.+|..|+..+ ++||..++|+||..+.++.++..
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4578899999976 89999999999999999999999999998 58999999999999988877654
No 60
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.87 E-value=4.6e-10 Score=78.35 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=44.1
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccc---ccccccccccccccccccccC
Q 024860 12 LKKGTWTPEEDRKLIAYVTKYGYWNWRQLP---KYAGLARCGKSCRLRWMNYLR 62 (261)
Q Consensus 12 lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia---~~~~~~R~~~qcr~Rw~~~L~ 62 (261)
-++.+||+|||+.|+++|++||. +|..|+ .++. +|+...+++||++...
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 36789999999999999999999 999999 5666 9999999999998653
No 61
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.86 E-value=2.7e-09 Score=77.10 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=44.7
Q ss_pred CCccCCCCHHHHHHHHHHHHhcC----CchhHhhhcCCCCCHHHHHHHHHHhhhh
Q 024860 64 NIKRGNYTKEEEDTIIRLHESLG----NRWSAIAAQLPGRTDNEIKNHWHTSLKK 114 (261)
Q Consensus 64 ~i~k~~WT~EED~~L~~~~~~~G----~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~ 114 (261)
..+.+.||.||+.+|.+++++|+ .+|..||+.| |||.++|+.||..++..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 45678999999999999999997 5799999998 99999999999887654
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=2e-09 Score=75.29 Aligned_cols=50 Identities=14% Similarity=0.180 Sum_probs=44.8
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 024860 9 KTGLKKGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKSCRLRWMNY 60 (261)
Q Consensus 9 k~~lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~qcr~Rw~~~ 60 (261)
+.....++||+||++++.+++.+||. +|..||++|+ +|+..||+.+|...
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~-~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLE-RKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 34456789999999999999999997 9999999999 99999999998754
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.72 E-value=1.4e-08 Score=87.80 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=46.1
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCchhHhhhcCCCCCHHHHHHHHHHhhhh
Q 024860 66 KRGNYTKEEEDTIIRLHESLGNRWSAIAAQLPGRTDNEIKNHWHTSLKK 114 (261)
Q Consensus 66 ~k~~WT~EED~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~ 114 (261)
..+.||+||++++++++.+||.+|..||+.+++||..||+++|+++.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999988765
No 64
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.67 E-value=2.1e-08 Score=69.70 Aligned_cols=47 Identities=21% Similarity=0.437 Sum_probs=42.5
Q ss_pred cCCCCHHHHHHHHHHHHhc--------CCc-hhHhhh-cCCCCCHHHHHHHHHHhhh
Q 024860 67 RGNYTKEEEDTIIRLHESL--------GNR-WSAIAA-QLPGRTDNEIKNHWHTSLK 113 (261)
Q Consensus 67 k~~WT~EED~~L~~~~~~~--------G~~-W~~Ia~-~l~gRt~~~~r~Rw~~~lk 113 (261)
|.+||.|||.+|+++|.++ |+. |..|++ .++++|-.+||+||.++|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 543 999999 7999999999999998875
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.58 E-value=8.4e-09 Score=74.52 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=43.9
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccccccC
Q 024860 10 TGLKKGTWTPEEDRKLIAYVTKYGY---WNWRQLPKYAGLARCGKSCRLRWMNYLR 62 (261)
Q Consensus 10 ~~lkk~~WT~eED~~L~~~V~~~g~---~~W~~Ia~~~~~~R~~~qcr~Rw~~~L~ 62 (261)
.+.+.+.||.|||++|..++.+|+. ..|..||+.+| |+..||+.||..+..
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 3456788999999999999999984 46999999984 999999999987543
No 66
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.56 E-value=9.5e-08 Score=69.00 Aligned_cols=48 Identities=19% Similarity=0.322 Sum_probs=43.1
Q ss_pred cCCCCHHHHHHHHHHHHhcC----CchhHhhhcCCCCCHHHHHHHHHHhhhh
Q 024860 67 RGNYTKEEEDTIIRLHESLG----NRWSAIAAQLPGRTDNEIKNHWHTSLKK 114 (261)
Q Consensus 67 k~~WT~EED~~L~~~~~~~G----~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~ 114 (261)
...||.||+.+|.+++..|+ ++|..||..++|||..+|+.||..+++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 46899999999999999997 4699999999999999999999877544
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.54 E-value=1.5e-08 Score=70.45 Aligned_cols=48 Identities=23% Similarity=0.414 Sum_probs=42.8
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCcccccc-cccccccccccccccccccC
Q 024860 14 KGTWTPEEDRKLIAYVTKY--------GYWNWRQLPK-YAGLARCGKSCRLRWMNYLR 62 (261)
Q Consensus 14 k~~WT~eED~~L~~~V~~~--------g~~~W~~Ia~-~~~~~R~~~qcr~Rw~~~L~ 62 (261)
+.+||+|||++|+++|.+| |..-|.++++ .++ .++..+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 5689999999999999999 5456999999 787 9999999999999874
No 68
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.47 E-value=9.2e-08 Score=91.32 Aligned_cols=46 Identities=17% Similarity=0.300 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCchhHhhhcCCCCCHHHHHHHHHHhhh
Q 024860 68 GNYTKEEEDTIIRLHESLGNRWSAIAAQLPGRTDNEIKNHWHTSLK 113 (261)
Q Consensus 68 ~~WT~EED~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~r~Rw~~~lk 113 (261)
..||.||-+++++++.+||.+|..||..+.+||..|||++|.++.+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999976544
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.40 E-value=5.5e-08 Score=70.23 Aligned_cols=48 Identities=21% Similarity=0.421 Sum_probs=43.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccccccC
Q 024860 14 KGTWTPEEDRKLIAYVTKYGY---WNWRQLPKYAGLARCGKSCRLRWMNYLR 62 (261)
Q Consensus 14 k~~WT~eED~~L~~~V~~~g~---~~W~~Ia~~~~~~R~~~qcr~Rw~~~L~ 62 (261)
...||.+|+++|..++..|+. ..|..||..+| +|+..+|+.||...+.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 357999999999999999975 46999999999 8999999999998754
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.35 E-value=2.2e-07 Score=80.31 Aligned_cols=50 Identities=22% Similarity=0.421 Sum_probs=45.9
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccC
Q 024860 11 GLKKGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKSCRLRWMNYLR 62 (261)
Q Consensus 11 ~lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~qcr~Rw~~~L~ 62 (261)
....++||+||++++++++.+||. +|..||+.+| +|+..||+.+|.++..
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 345778999999999999999998 9999999999 9999999999998764
No 71
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.09 E-value=5.1e-06 Score=75.21 Aligned_cols=102 Identities=22% Similarity=0.276 Sum_probs=80.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccc-------ccccc---------------------------
Q 024860 15 GTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKSCRL-------RWMNY--------------------------- 60 (261)
Q Consensus 15 ~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~qcr~-------Rw~~~--------------------------- 60 (261)
+.||..+...++.++.+||..+|..||..|+ +++...++. ||..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999999999999999999999998 787766542 22110
Q ss_pred ----------------cCCCCccCCCCHHHHHHHHHHHHhcC----CchhHhhh------------cCCCCCHHHHHHHH
Q 024860 61 ----------------LRPNIKRGNYTKEEEDTIIRLHESLG----NRWSAIAA------------QLPGRTDNEIKNHW 108 (261)
Q Consensus 61 ----------------L~p~i~k~~WT~EED~~L~~~~~~~G----~~W~~Ia~------------~l~gRt~~~~r~Rw 108 (261)
..+..+...||+|||..||-++.+|| +.|..|.. .+..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 00222456899999999999999999 46999962 34679999999999
Q ss_pred HHhhhhhhh
Q 024860 109 HTSLKKRLK 117 (261)
Q Consensus 109 ~~~lk~~~k 117 (261)
..+++-..+
T Consensus 270 ~tLi~~iek 278 (304)
T 1ofc_X 270 NTLITLIER 278 (304)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999876544
No 72
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.09 E-value=3.8e-06 Score=62.51 Aligned_cols=50 Identities=20% Similarity=0.334 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHHhcCC---chhHhhhcCCCCCHHHHHHHHHHhhhhhhh
Q 024860 68 GNYTKEEEDTIIRLHESLGN---RWSAIAAQLPGRTDNEIKNHWHTSLKKRLK 117 (261)
Q Consensus 68 ~~WT~EED~~L~~~~~~~G~---~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~~k 117 (261)
-.||.|||..||...++-|. .|..||+.|.+|+.+|+++|++.+++-.-+
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 36999999999999999995 799999999889999999999998875443
No 73
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=1.3e-05 Score=56.05 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=44.5
Q ss_pred CCCCccCCCCHHHHHHHHHHHHhcCCchhHhhh-cCCCCCHHHHHHHHHH
Q 024860 62 RPNIKRGNYTKEEEDTIIRLHESLGNRWSAIAA-QLPGRTDNEIKNHWHT 110 (261)
Q Consensus 62 ~p~i~k~~WT~EED~~L~~~~~~~G~~W~~Ia~-~l~gRt~~~~r~Rw~~ 110 (261)
.|.++...||+||-++..+.+.+||.+|..|++ .|++||..+|...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 367788999999999999999999999999998 5899999999988854
No 74
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.98 E-value=1.2e-06 Score=62.82 Aligned_cols=44 Identities=11% Similarity=0.275 Sum_probs=39.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC---Ccccccccccccccccccccccc
Q 024860 14 KGTWTPEEDRKLIAYVTKYGYW---NWRQLPKYAGLARCGKSCRLRWM 58 (261)
Q Consensus 14 k~~WT~eED~~L~~~V~~~g~~---~W~~Ia~~~~~~R~~~qcr~Rw~ 58 (261)
.+.||.||+++|..++..|+.. .|.+||+.|| ||+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 4579999999999999999763 7999999999 999999999986
No 75
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.97 E-value=2e-06 Score=61.74 Aligned_cols=43 Identities=23% Similarity=0.375 Sum_probs=38.1
Q ss_pred cCCCCHHHHHHHHHHHHhcCC----chhHhhhcCCCCCHHHHHHHHH
Q 024860 67 RGNYTKEEEDTIIRLHESLGN----RWSAIAAQLPGRTDNEIKNHWH 109 (261)
Q Consensus 67 k~~WT~EED~~L~~~~~~~G~----~W~~Ia~~l~gRt~~~~r~Rw~ 109 (261)
...||.||+++|.++...|.. +|.+||+.+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999973 7999999999999999999873
No 76
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.21 E-value=9.9e-07 Score=62.21 Aligned_cols=45 Identities=18% Similarity=0.393 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---chhHhhhcCCCCCHHHHHHHHHHhhhh
Q 024860 69 NYTKEEEDTIIRLHESLGN---RWSAIAAQLPGRTDNEIKNHWHTSLKK 114 (261)
Q Consensus 69 ~WT~EED~~L~~~~~~~G~---~W~~Ia~~l~gRt~~~~r~Rw~~~lk~ 114 (261)
.||.|||..|+..+.+-|. .|..||+.| +|+++||.+|++.+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 5999999999999999996 699999999 99999999999988754
No 77
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=7.8e-06 Score=57.24 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=44.0
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccc-ccccccccccccccccc
Q 024860 9 KTGLKKGTWTPEEDRKLIAYVTKYGYWNWRQLPK-YAGLARCGKSCRLRWMN 59 (261)
Q Consensus 9 k~~lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia~-~~~~~R~~~qcr~Rw~~ 59 (261)
.|.++...||+||-++..+++.+||. +|..|++ +++ +|+..||..-|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 46778889999999999999999999 9999998 688 9999999887653
No 78
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.70 E-value=0.0001 Score=55.38 Aligned_cols=61 Identities=20% Similarity=0.309 Sum_probs=51.3
Q ss_pred cccccccCCCCccCCCCHHHHHHHHHHHHhcCCchhHhhhcCC-----CCCHHHHHHHHHHhhhhhhhhC
Q 024860 55 LRWMNYLRPNIKRGNYTKEEEDTIIRLHESLGNRWSAIAAQLP-----GRTDNEIKNHWHTSLKKRLKRN 119 (261)
Q Consensus 55 ~Rw~~~L~p~i~k~~WT~EED~~L~~~~~~~G~~W~~Ia~~l~-----gRt~~~~r~Rw~~~lk~~~k~~ 119 (261)
+-|..+|. ...||.||...|++++++|+-+|..|+..+. +||..++|.||..+.++.++..
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 34445554 3689999999999999999999999998873 6999999999999988877644
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.54 E-value=0.00014 Score=54.79 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=41.0
Q ss_pred cCCCCHHHHHHHHHHHHhcCCchhHhhhcCCCCCHHHHHHHHHH
Q 024860 67 RGNYTKEEEDTIIRLHESLGNRWSAIAAQLPGRTDNEIKNHWHT 110 (261)
Q Consensus 67 k~~WT~EED~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~r~Rw~~ 110 (261)
...||+||.++..+....||.+|..||..|++||..+|-..|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46899999999999999999999999999999999999988854
No 80
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.51 E-value=2.9e-05 Score=74.13 Aligned_cols=48 Identities=21% Similarity=0.413 Sum_probs=44.0
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 024860 12 LKKGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKSCRLRWMNYL 61 (261)
Q Consensus 12 lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~qcr~Rw~~~L 61 (261)
....+||.||-+++++++.+||. +|..||+.+| +|+..||+..|.++-
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45689999999999999999998 9999999999 999999999987653
No 81
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.44 E-value=0.00028 Score=50.30 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=40.6
Q ss_pred cCCCCHHHHHHHHHHHHhcCCchhHhhh-cCCCCCHHHHHHHHHH
Q 024860 67 RGNYTKEEEDTIIRLHESLGNRWSAIAA-QLPGRTDNEIKNHWHT 110 (261)
Q Consensus 67 k~~WT~EED~~L~~~~~~~G~~W~~Ia~-~l~gRt~~~~r~Rw~~ 110 (261)
...||+||-.+..+.+..||.+|..|++ .|++||..+|...|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4689999999999999999999999999 5899999999998863
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.35 E-value=4.9e-05 Score=57.20 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=42.5
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccccccc----cccccccccccccccc
Q 024860 12 LKKGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAG----LARCGKSCRLRWMNYL 61 (261)
Q Consensus 12 lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~----~~R~~~qcr~Rw~~~L 61 (261)
|...+||.||+..|.+++.+|+. .|..|+.... .+|+..+++.||..+.
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 34478999999999999999999 9999998883 2799999999998653
No 83
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.29 E-value=0.00018 Score=52.93 Aligned_cols=51 Identities=16% Similarity=0.459 Sum_probs=41.3
Q ss_pred ccCCCCHHHHHHHHHHHHhcC----------CchhHhhhcC----CCCCHHHHHHHHHHhhhhhh
Q 024860 66 KRGNYTKEEEDTIIRLHESLG----------NRWSAIAAQL----PGRTDNEIKNHWHTSLKKRL 116 (261)
Q Consensus 66 ~k~~WT~EED~~L~~~~~~~G----------~~W~~Ia~~l----~gRt~~~~r~Rw~~~lk~~~ 116 (261)
+...||.+|-..||++...+. ..|..||..| -.||+.||+.+|.++.+.-.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk 67 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFK 67 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 356899999999999987532 1499999987 25999999999988877643
No 84
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.18 E-value=0.00012 Score=52.15 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=40.0
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCcccccc-ccccccccccccccccc
Q 024860 13 KKGTWTPEEDRKLIAYVTKYGYWNWRQLPK-YAGLARCGKSCRLRWMN 59 (261)
Q Consensus 13 kk~~WT~eED~~L~~~V~~~g~~~W~~Ia~-~~~~~R~~~qcr~Rw~~ 59 (261)
....||+||-++..+++.+||. +|..|++ +++ +|+..+|..-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 3457999999999999999999 9999999 688 9999999876653
No 85
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.13 E-value=0.00013 Score=54.97 Aligned_cols=43 Identities=12% Similarity=0.291 Sum_probs=39.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccc
Q 024860 14 KGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKSCRLRWM 58 (261)
Q Consensus 14 k~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~qcr~Rw~ 58 (261)
...||+||.+++.++...||. +|..|++.++ +|+..+|.+.|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~-~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCT-TCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcC-CCCHHHHHHHHh
Confidence 356999999999999999998 9999999999 999999988664
No 86
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.96 E-value=0.00024 Score=52.82 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=44.0
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCC--CCcccccccccccccccccccccccc
Q 024860 9 KTGLKKGTWTPEEDRKLIAYVTKYGY--WNWRQLPKYAGLARCGKSCRLRWMNY 60 (261)
Q Consensus 9 k~~lkk~~WT~eED~~L~~~V~~~g~--~~W~~Ia~~~~~~R~~~qcr~Rw~~~ 60 (261)
++|-+-.-||.|||+.|+...++.|. ..|..||+.++ +|+..|+++||+..
T Consensus 28 s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 28 STGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL 80 (95)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred CCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 44555567999999999999999875 47999999999 99999999999863
No 87
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.87 E-value=0.0023 Score=59.25 Aligned_cols=105 Identities=21% Similarity=0.277 Sum_probs=77.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccc-------ccccc---------------------------
Q 024860 15 GTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKSCRL-------RWMNY--------------------------- 60 (261)
Q Consensus 15 ~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~qcr~-------Rw~~~--------------------------- 60 (261)
+.||.-+=..++.++.+||..+-..||..|+.+.+...++. ||..+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999999999999899999998853455544331 11111
Q ss_pred -------------c----CCC-CccCCCCHHHHHHHHHHHHhcC----CchhHhhhc------------CCCCCHHHHHH
Q 024860 61 -------------L----RPN-IKRGNYTKEEEDTIIRLHESLG----NRWSAIAAQ------------LPGRTDNEIKN 106 (261)
Q Consensus 61 -------------L----~p~-i~k~~WT~EED~~L~~~~~~~G----~~W~~Ia~~------------l~gRt~~~~r~ 106 (261)
| .++ -+...||.+||..||-++.+|| +.|..|-.. +..||+..|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 0 011 1345799999999999999999 469999433 46799999999
Q ss_pred HHHHhhhhhhhhC
Q 024860 107 HWHTSLKKRLKRN 119 (261)
Q Consensus 107 Rw~~~lk~~~k~~ 119 (261)
|...+++-..+..
T Consensus 284 Rc~tLi~~IeKE~ 296 (374)
T 2y9y_A 284 RGNTLLQCLEKEF 296 (374)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999997765543
No 88
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.86 E-value=9.6e-05 Score=54.47 Aligned_cols=49 Identities=29% Similarity=0.606 Sum_probs=39.3
Q ss_pred CcCCCCHHHHHHHHHHHHHhCC---------CCcccccccc---ccccccccccccccccc
Q 024860 13 KKGTWTPEEDRKLIAYVTKYGY---------WNWRQLPKYA---GLARCGKSCRLRWMNYL 61 (261)
Q Consensus 13 kk~~WT~eED~~L~~~V~~~g~---------~~W~~Ia~~~---~~~R~~~qcr~Rw~~~L 61 (261)
+...||.+|-..|+++...+.. .-|..||..| |..|++.||+.+|.++.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4677999999999999976421 2599999774 35799999999998753
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.70 E-value=0.00028 Score=49.76 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=43.2
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCC--CCccccccccccccccccccccccccc
Q 024860 9 KTGLKKGTWTPEEDRKLIAYVTKYGY--WNWRQLPKYAGLARCGKSCRLRWMNYL 61 (261)
Q Consensus 9 k~~lkk~~WT~eED~~L~~~V~~~g~--~~W~~Ia~~~~~~R~~~qcr~Rw~~~L 61 (261)
+.|-.-..||.|||..|+...++.|. ..|..||+.+ +|++.|+..||+..+
T Consensus 9 ~~ge~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 9 KKGEIIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLM 61 (70)
Confidence 34455567999999999999999886 3699999988 599999999999765
No 90
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.60 E-value=0.001 Score=56.46 Aligned_cols=46 Identities=15% Similarity=0.297 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHHHhcC-CchhHhhh--cC--C----------CCCHHHHHHHHHHhhh
Q 024860 68 GNYTKEEEDTIIRLHESLG-NRWSAIAA--QL--P----------GRTDNEIKNHWHTSLK 113 (261)
Q Consensus 68 ~~WT~EED~~L~~~~~~~G-~~W~~Ia~--~l--~----------gRt~~~~r~Rw~~~lk 113 (261)
..||.+||..|+..+.+|| ++|..|-. .| . .++...+..|-..+|+
T Consensus 135 ~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 135 IDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 3599999999999999999 99999965 22 1 2456778888766554
No 91
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.06 E-value=0.019 Score=48.50 Aligned_cols=38 Identities=29% Similarity=0.657 Sum_probs=31.8
Q ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccc
Q 024860 5 PCCDKTGLKKGTWTPEEDRKLIAYVTKYGYWNWRQLPK 42 (261)
Q Consensus 5 p~~~k~~lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia~ 42 (261)
|++.++.-....||.+||..|+-+|.+||-++|.+|-.
T Consensus 125 ~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 125 PCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 55555555566799999999999999999999999875
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.87 E-value=0.063 Score=37.36 Aligned_cols=48 Identities=17% Similarity=0.150 Sum_probs=41.3
Q ss_pred CccCCCCHHHHHHHHHHHHhcCCc---hhHhhhcC--CCCCHHHHHHHHHHhh
Q 024860 65 IKRGNYTKEEEDTIIRLHESLGNR---WSAIAAQL--PGRTDNEIKNHWHTSL 112 (261)
Q Consensus 65 i~k~~WT~EED~~L~~~~~~~G~~---W~~Ia~~l--~gRt~~~~r~Rw~~~l 112 (261)
..+-.||+|.-+..++++..+|.. +..|.+.| +|.|..+|+.+.+.|-
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 346689999999999999999954 88998876 7899999999987764
No 93
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.55 E-value=0.011 Score=44.22 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=40.2
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccccccc----cccccccccccccccc
Q 024860 12 LKKGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAG----LARCGKSCRLRWMNYL 61 (261)
Q Consensus 12 lkk~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~----~~R~~~qcr~Rw~~~L 61 (261)
|+...||.||...|.+++.+|+. .|.-|+.... ..|+..+.++||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 34468999999999999999999 9998886653 2688888999987653
No 94
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=91.99 E-value=0.25 Score=44.44 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=39.7
Q ss_pred cCCCCHHHHHHHHHHHHhcC-CchhHhhhcCCCCCHHHHHHHHHHhh
Q 024860 67 RGNYTKEEEDTIIRLHESLG-NRWSAIAAQLPGRTDNEIKNHWHTSL 112 (261)
Q Consensus 67 k~~WT~EED~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~r~Rw~~~l 112 (261)
-+.||..+....+.++.+|| ..|..||..++|+|..+|+.......
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw 156 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFW 156 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 35799999999999999999 68999999999999999966554433
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=91.31 E-value=0.16 Score=45.05 Aligned_cols=28 Identities=50% Similarity=0.917 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccc
Q 024860 15 GTWTPEEDRKLIAYVTKYGYWNWRQLPK 42 (261)
Q Consensus 15 ~~WT~eED~~L~~~V~~~g~~~W~~Ia~ 42 (261)
..|+.+||..|+-.|.+||.++|.+|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4599999999999999999999999974
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=89.37 E-value=0.23 Score=44.00 Aligned_cols=27 Identities=30% Similarity=0.557 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHHHhcC-CchhHhhh
Q 024860 68 GNYTKEEEDTIIRLHESLG-NRWSAIAA 94 (261)
Q Consensus 68 ~~WT~EED~~L~~~~~~~G-~~W~~Ia~ 94 (261)
..|+.+||..|+..|.+|| |.|.+|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 3599999999999999999 99999964
No 97
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=88.79 E-value=0.17 Score=35.11 Aligned_cols=49 Identities=14% Similarity=0.218 Sum_probs=35.4
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCC---cccccccccc-cccccccccccccc
Q 024860 11 GLKKGTWTPEEDRKLIAYVTKYGYWN---WRQLPKYAGL-ARCGKSCRLRWMNY 60 (261)
Q Consensus 11 ~lkk~~WT~eED~~L~~~V~~~g~~~---W~~Ia~~~~~-~R~~~qcr~Rw~~~ 60 (261)
...+-.||+|..++.+++|+..|. + ++.|.+.|+. +.|..+++-|.+.|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 345678999999999999999994 4 5677776652 45666666555443
No 98
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=66.44 E-value=26 Score=26.01 Aligned_cols=89 Identities=13% Similarity=0.110 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCcccccccccccccccc-ccccccccc--CCCCccCCCCHHHHHHHHHHHHhcCCchhHh
Q 024860 16 TWTPEEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKS-CRLRWMNYL--RPNIKRGNYTKEEEDTIIRLHESLGNRWSAI 92 (261)
Q Consensus 16 ~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~q-cr~Rw~~~L--~p~i~k~~WT~EED~~L~~~~~~~G~~W~~I 92 (261)
..|.++-..++.++. -|. .-.+||+.+|..|+... ...+|..+- .........+++++..|+.+...-+-.=..|
T Consensus 6 ~~s~~~r~~i~~~~~-~G~-s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~~~i 83 (141)
T 1u78_A 6 ALSDTERAQLDVMKL-LNV-SLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTARDI 83 (141)
T ss_dssp CCCHHHHHHHHHHHH-TTC-CHHHHHHHHTCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCHHHH
T ss_pred cCCHHHHHHHHHHHH-cCC-CHHHHHHHHCcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCHHHH
Confidence 478888888887774 454 77899999985443221 122232221 1112233588888888888733222234678
Q ss_pred hhcCCC--CCHHHHHHH
Q 024860 93 AAQLPG--RTDNEIKNH 107 (261)
Q Consensus 93 a~~l~g--Rt~~~~r~R 107 (261)
+..| | -+...|...
T Consensus 84 ~~~l-g~~~s~~tV~r~ 99 (141)
T 1u78_A 84 RNEL-QLSASKRTILNV 99 (141)
T ss_dssp HHHT-TCCSCHHHHHHH
T ss_pred HHHH-CCCccHHHHHHH
Confidence 8877 4 455555543
No 99
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=60.70 E-value=13 Score=34.22 Aligned_cols=46 Identities=28% Similarity=0.408 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHhcC-CchhHhhhcCC-CCCHHHHHHHHHHhhhh
Q 024860 68 GNYTKEEEDTIIRLHESLG-NRWSAIAAQLP-GRTDNEIKNHWHTSLKK 114 (261)
Q Consensus 68 ~~WT~EED~~L~~~~~~~G-~~W~~Ia~~l~-gRt~~~~r~Rw~~~lk~ 114 (261)
+.||.-+=..++.+..+|| ..-..||..|. |.|..+|+ +|...+=.
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~ 171 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWS 171 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHH
Confidence 4688888899999999999 67999999997 99999999 55554433
No 100
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=57.40 E-value=15 Score=24.08 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCCchhHhhhcCCCCCHHHHHHHHHHhhhh
Q 024860 73 EEEDTIIRLHESLGNRWSAIAAQLPGRTDNEIKNHWHTSLKK 114 (261)
Q Consensus 73 EED~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~ 114 (261)
+.+..++.++-..|-.+..||..| |-+...|+.+.+..+++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 344455556667788899999999 88999988877666544
No 101
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=56.89 E-value=3 Score=32.35 Aligned_cols=57 Identities=12% Similarity=0.243 Sum_probs=38.9
Q ss_pred HHHHHHHHhCC-------CCcccccccccccccc----cccccccccccCCCCccCCCCHHHHHHHHHHHH
Q 024860 24 KLIAYVTKYGY-------WNWRQLPKYAGLARCG----KSCRLRWMNYLRPNIKRGNYTKEEEDTIIRLHE 83 (261)
Q Consensus 24 ~L~~~V~~~g~-------~~W~~Ia~~~~~~R~~----~qcr~Rw~~~L~p~i~k~~WT~EED~~L~~~~~ 83 (261)
+|..+|.+.|. ..|.+||..++...+. ...+..|.++|.|- ...+++|-..|.+-|.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 45556666653 3699999999854432 35678888888642 2377888888876654
No 102
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=55.08 E-value=2.1 Score=32.77 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=29.8
Q ss_pred HHHHHHHHhCC-------CCcccccccccccccccccccccccccCC
Q 024860 24 KLIAYVTKYGY-------WNWRQLPKYAGLARCGKSCRLRWMNYLRP 63 (261)
Q Consensus 24 ~L~~~V~~~g~-------~~W~~Ia~~~~~~R~~~qcr~Rw~~~L~p 63 (261)
+|..+|.+.|. ..|.+||..+|... +..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 57778887764 46999999998544 77788888887753
No 103
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=53.96 E-value=18 Score=24.31 Aligned_cols=44 Identities=16% Similarity=0.306 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHh----cCCchhHhhhcCCCCCHHHHHHHHHHhhhhh
Q 024860 70 YTKEEEDTIIRLHES----LGNRWSAIAAQLPGRTDNEIKNHWHTSLKKR 115 (261)
Q Consensus 70 WT~EED~~L~~~~~~----~G~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~ 115 (261)
.++.|-+ ++.+.-- .|-.+..||..| |-+...|+.+-...+++-
T Consensus 11 L~~~er~-il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 11 LSEREAM-VLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp SCHHHHH-HHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3444444 4444443 567899999999 899999998877766554
No 104
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=51.07 E-value=3.4 Score=30.96 Aligned_cols=41 Identities=15% Similarity=0.264 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCC-------CCccccccccccccc----ccccccccccccCC
Q 024860 23 RKLIAYVTKYGY-------WNWRQLPKYAGLARC----GKSCRLRWMNYLRP 63 (261)
Q Consensus 23 ~~L~~~V~~~g~-------~~W~~Ia~~~~~~R~----~~qcr~Rw~~~L~p 63 (261)
-+|..+|.+.|. ..|.+|+..+|...+ +.+++..|.++|.|
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 467778887764 479999999985432 35678888888765
No 105
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=49.83 E-value=19 Score=23.76 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=29.2
Q ss_pred HHHHHHHHH----hcCCchhHhhhcCCCCCHHHHHHHHHHhhhhh
Q 024860 75 EDTIIRLHE----SLGNRWSAIAAQLPGRTDNEIKNHWHTSLKKR 115 (261)
Q Consensus 75 D~~L~~~~~----~~G~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~ 115 (261)
+..++.+.- ..|-.+.+||..| |-+...|+.+.+..+++-
T Consensus 10 er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 10 EAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 334444444 3467899999999 999999999887776554
No 106
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=48.41 E-value=67 Score=24.64 Aligned_cols=81 Identities=11% Similarity=0.029 Sum_probs=47.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccc-cccccccc--cCCCCc----cCCCCHHHHHHHHHHHHhcC
Q 024860 14 KGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKS-CRLRWMNY--LRPNIK----RGNYTKEEEDTIIRLHESLG 86 (261)
Q Consensus 14 k~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~q-cr~Rw~~~--L~p~i~----k~~WT~EED~~L~~~~~~~G 86 (261)
..+.|.++-..++.++. .|. .-.+||+.++..++... ...||... +.+... ....+.++.+.|++++.+..
T Consensus 23 ~~~~s~e~r~~ii~l~~-~G~-s~~~IA~~lgis~~TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~ 100 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAH-QGV-RPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNP 100 (159)
T ss_dssp SCSSCHHHHHHHHHHHH-HTC-CHHHHHHHHTCCSHHHHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHCcCHHHHHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHHCc
Confidence 34689999888888884 454 77899999884433211 12222211 222211 23578888888888886543
Q ss_pred -CchhHhhhcC
Q 024860 87 -NRWSAIAAQL 96 (261)
Q Consensus 87 -~~W~~Ia~~l 96 (261)
-.-..|+..|
T Consensus 101 ~~s~~~i~~~l 111 (159)
T 2k27_A 101 TMFAWEIRDRL 111 (159)
T ss_dssp SSCHHHHHHHH
T ss_pred cchHHHHHHHH
Confidence 2223455444
No 107
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=47.19 E-value=11 Score=28.64 Aligned_cols=39 Identities=18% Similarity=0.328 Sum_probs=30.5
Q ss_pred HHHHHHHhcCC--------chhHhhhcCCCCCHHHHHHHHHHhhhhh
Q 024860 77 TIIRLHESLGN--------RWSAIAAQLPGRTDNEIKNHWHTSLKKR 115 (261)
Q Consensus 77 ~L~~~~~~~G~--------~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~ 115 (261)
.|..+|..+|| .|..||..|.--.+..+|..|..+|-+-
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 57777887774 4999999883333789999999998764
No 108
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=47.13 E-value=3.1 Score=31.81 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCC-------CCccccccccccccc---ccccccccccccC
Q 024860 23 RKLIAYVTKYGY-------WNWRQLPKYAGLARC---GKSCRLRWMNYLR 62 (261)
Q Consensus 23 ~~L~~~V~~~g~-------~~W~~Ia~~~~~~R~---~~qcr~Rw~~~L~ 62 (261)
-+|..+|.+.|. ..|.+|+..+|...+ +.+.+..|.++|.
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~ 92 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVY 92 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 367888888874 469999999985432 3456777777764
No 109
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=46.79 E-value=23 Score=26.84 Aligned_cols=39 Identities=15% Similarity=0.366 Sum_probs=29.7
Q ss_pred HHHHHHHhcCC--------chhHhhhcCCCC----CHHHHHHHHHHhhhhh
Q 024860 77 TIIRLHESLGN--------RWSAIAAQLPGR----TDNEIKNHWHTSLKKR 115 (261)
Q Consensus 77 ~L~~~~~~~G~--------~W~~Ia~~l~gR----t~~~~r~Rw~~~lk~~ 115 (261)
.|..+|..+|| .|..||..|.-- .+..+|..|..+|-+-
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 57777888874 599999998222 2678999999998774
No 110
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=46.12 E-value=17 Score=27.96 Aligned_cols=41 Identities=17% Similarity=0.311 Sum_probs=31.8
Q ss_pred HHHHHHHhcCC--------chhHhhhcCCCCCHHHHHHHHHHhhhhhhh
Q 024860 77 TIIRLHESLGN--------RWSAIAAQLPGRTDNEIKNHWHTSLKKRLK 117 (261)
Q Consensus 77 ~L~~~~~~~G~--------~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~~k 117 (261)
.|..+|.+.|+ .|..||..|.--.+..+|..|.++|-+--.
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 46677777774 499999988333399999999999988644
No 111
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=45.69 E-value=27 Score=25.77 Aligned_cols=39 Identities=21% Similarity=0.459 Sum_probs=29.0
Q ss_pred HHHHHHHhcCC--------chhHhhhcCCC-CC---HHHHHHHHHHhhhhh
Q 024860 77 TIIRLHESLGN--------RWSAIAAQLPG-RT---DNEIKNHWHTSLKKR 115 (261)
Q Consensus 77 ~L~~~~~~~G~--------~W~~Ia~~l~g-Rt---~~~~r~Rw~~~lk~~ 115 (261)
.|..+|..+|| .|..||..|.- .+ +..+|..|..+|-+-
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 46677777774 59999999832 22 578999999998764
No 112
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=44.51 E-value=3.4 Score=32.06 Aligned_cols=41 Identities=27% Similarity=0.378 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCC-------CCccccccccccccc----ccccccccccccCC
Q 024860 23 RKLIAYVTKYGY-------WNWRQLPKYAGLARC----GKSCRLRWMNYLRP 63 (261)
Q Consensus 23 ~~L~~~V~~~g~-------~~W~~Ia~~~~~~R~----~~qcr~Rw~~~L~p 63 (261)
-+|..+|.+.|. ..|.+|+..+|...+ +.+++..|.++|.|
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 457778888774 469999999985443 34567778777754
No 113
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=44.11 E-value=17 Score=29.67 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=18.5
Q ss_pred CCCccCCCCHHHHHHHH--------HHHHhcC
Q 024860 63 PNIKRGNYTKEEEDTII--------RLHESLG 86 (261)
Q Consensus 63 p~i~k~~WT~EED~~L~--------~~~~~~G 86 (261)
|.-..|-||.|+|+.|. +++++||
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 45678999999999886 4556665
No 114
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=42.28 E-value=33 Score=25.50 Aligned_cols=35 Identities=26% Similarity=0.457 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHhcCCchhHhhhcCCCCCHHHHHH
Q 024860 71 TKEEEDTIIRLHESLGNRWSAIAAQLPGRTDNEIKN 106 (261)
Q Consensus 71 T~EED~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~r~ 106 (261)
+..-+..|..+....|..|..+|..| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 56667788888899999999999999 777765544
No 115
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=42.23 E-value=22 Score=27.94 Aligned_cols=45 Identities=11% Similarity=0.122 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcC-CchhHhhhcCCCCCHHHHHHHHHHhhhhhhhh
Q 024860 73 EEEDTIIRLHESLG-NRWSAIAAQLPGRTDNEIKNHWHTSLKKRLKR 118 (261)
Q Consensus 73 EED~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~~k~ 118 (261)
+-|..|+++..+.| -.+..||+.+ |=+...|+.|...+....+-+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 56788888888877 4699999999 999999999998888777654
No 116
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=41.12 E-value=29 Score=26.63 Aligned_cols=77 Identities=18% Similarity=0.322 Sum_probs=51.4
Q ss_pred CcCCCCHHHH--HHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCccCCCCHHHHHHHHHHHHhcCC---
Q 024860 13 KKGTWTPEED--RKLIAYVTKYGYWNWRQLPKYAGLARCGKSCRLRWMNYLRPNIKRGNYTKEEEDTIIRLHESLGN--- 87 (261)
Q Consensus 13 kk~~WT~eED--~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~qcr~Rw~~~L~p~i~k~~WT~EED~~L~~~~~~~G~--- 87 (261)
=+.+|.+.+. +.|....++.|. ....++.. + +|.-. =-+|..+|.++||
T Consensus 6 ~~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~i-~-gk~lD-----------------------L~~Ly~~V~~~GG~~~ 59 (121)
T 2rq5_A 6 LGRRWGPNVQRLACIKKHLRSQGI-TMDELPLI-G-GCELD-----------------------LACFFRLINEMGGMQQ 59 (121)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHTTC-CCSSCCEE-T-TEECC-----------------------HHHHHHHHHHTTSHHH
T ss_pred hhHhcCCcHHHHHHHHHHHHHcCC-CCCCCCcC-C-CEecc-----------------------HHHHHHHHHHcCcHHH
Confidence 3567988775 456667777776 55555543 3 34321 1257788888885
Q ss_pred -----chhHhhhcC--CCC---CHHHHHHHHHHhhhhh
Q 024860 88 -----RWSAIAAQL--PGR---TDNEIKNHWHTSLKKR 115 (261)
Q Consensus 88 -----~W~~Ia~~l--~gR---t~~~~r~Rw~~~lk~~ 115 (261)
.|..||..| +.- ....+|..|..+|-+-
T Consensus 60 Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 60 VTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp HHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred hcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 499999998 322 2568999999998764
No 117
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=40.82 E-value=35 Score=23.94 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCchhHhhhcCCCCCHHHHHHHHHHhhhh
Q 024860 74 EEDTIIRLHESLGNRWSAIAAQLPGRTDNEIKNHWHTSLKK 114 (261)
Q Consensus 74 ED~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~ 114 (261)
.+..++.++-..|-.-..||..| |-+...|+.+.+..+++
T Consensus 41 ~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 41 EHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34455566566677889999999 88888888887665543
No 118
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=40.79 E-value=32 Score=26.29 Aligned_cols=39 Identities=15% Similarity=0.317 Sum_probs=29.5
Q ss_pred HHHHHHHhcCC--------chhHhhhcCCC-C---CHHHHHHHHHHhhhhh
Q 024860 77 TIIRLHESLGN--------RWSAIAAQLPG-R---TDNEIKNHWHTSLKKR 115 (261)
Q Consensus 77 ~L~~~~~~~G~--------~W~~Ia~~l~g-R---t~~~~r~Rw~~~lk~~ 115 (261)
.|..+|..+|| .|..||..|.- . .+..+|..|..+|-+-
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 56777777774 49999999822 2 2568999999999874
No 119
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=40.61 E-value=32 Score=26.22 Aligned_cols=39 Identities=21% Similarity=0.430 Sum_probs=29.4
Q ss_pred HHHHHHHhcCC--------chhHhhhcCCC-C-C--HHHHHHHHHHhhhhh
Q 024860 77 TIIRLHESLGN--------RWSAIAAQLPG-R-T--DNEIKNHWHTSLKKR 115 (261)
Q Consensus 77 ~L~~~~~~~G~--------~W~~Ia~~l~g-R-t--~~~~r~Rw~~~lk~~ 115 (261)
+|..+|.++|| .|..|+..|.- . + +..+|..|.++|-+-
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 56777777774 49999999822 1 1 468999999999874
No 120
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=40.30 E-value=10 Score=27.55 Aligned_cols=45 Identities=24% Similarity=0.596 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCC-------ccCCCCHHHHHHHH
Q 024860 22 DRKLIAYVTKYGYWNWRQLPKYAGLARCGKSCRLRWMNYLRPNI-------KRGNYTKEEEDTII 79 (261)
Q Consensus 22 D~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~qcr~Rw~~~L~p~i-------~k~~WT~EED~~L~ 79 (261)
+.+|.++|..|| |..++..+. -| |.. .+|.+ +|.+|..+.-|.|.
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~-I~----CF~-----~~PSikSSLKFLRKTpWAR~KVE~lY 69 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVN-IN----CFK-----KDPSIKSSLKFLRKTDWARERVENIY 69 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTT-SS----STT-----SSCCHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcc-cc----cCC-----CCCchHHHHHHHhcCHhHHHHHHHHH
Confidence 578999999997 898887765 33 332 45655 47899998877654
No 121
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=39.30 E-value=35 Score=26.10 Aligned_cols=39 Identities=18% Similarity=0.327 Sum_probs=30.1
Q ss_pred HHHHHHHhcCC--------chhHhhhcC--CCC---CHHHHHHHHHHhhhhh
Q 024860 77 TIIRLHESLGN--------RWSAIAAQL--PGR---TDNEIKNHWHTSLKKR 115 (261)
Q Consensus 77 ~L~~~~~~~G~--------~W~~Ia~~l--~gR---t~~~~r~Rw~~~lk~~ 115 (261)
.|..+|..+|| .|..||..| +.. .+..+|..|..+|-+-
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 57777888874 599999998 222 2678999999999874
No 122
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=36.54 E-value=36 Score=25.64 Aligned_cols=31 Identities=26% Similarity=0.581 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcCCchhHhhhcCCCCCHHHHHH
Q 024860 75 EDTIIRLHESLGNRWSAIAAQLPGRTDNEIKN 106 (261)
Q Consensus 75 D~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~r~ 106 (261)
|..|..+....|..|..+|..| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567778899999999999998 666665543
No 123
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=36.01 E-value=37 Score=26.68 Aligned_cols=39 Identities=18% Similarity=0.314 Sum_probs=30.0
Q ss_pred HHHHHHHhcCC--------chhHhhhcC--CCC---CHHHHHHHHHHhhhhh
Q 024860 77 TIIRLHESLGN--------RWSAIAAQL--PGR---TDNEIKNHWHTSLKKR 115 (261)
Q Consensus 77 ~L~~~~~~~G~--------~W~~Ia~~l--~gR---t~~~~r~Rw~~~lk~~ 115 (261)
.|..+|...|| .|..||..| +.. .+..+|..|..+|-+-
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 56777777774 499999988 222 2678999999999875
No 124
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=35.70 E-value=40 Score=25.44 Aligned_cols=38 Identities=24% Similarity=0.464 Sum_probs=26.1
Q ss_pred CccCCCCHHHHHHHHHHHHhcCCchhHhhhcCCCCCHHHHHH
Q 024860 65 IKRGNYTKEEEDTIIRLHESLGNRWSAIAAQLPGRTDNEIKN 106 (261)
Q Consensus 65 i~k~~WT~EED~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~r~ 106 (261)
+-...=|.+ .|..++..+|..|..+|..| |=+..+|..
T Consensus 17 ~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 17 ILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp CTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred hhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 333444444 46666888999999999998 666665543
No 125
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=35.10 E-value=42 Score=25.37 Aligned_cols=29 Identities=28% Similarity=0.575 Sum_probs=22.1
Q ss_pred HHHHHHHhcCCchhHhhhcCCCCCHHHHHH
Q 024860 77 TIIRLHESLGNRWSAIAAQLPGRTDNEIKN 106 (261)
Q Consensus 77 ~L~~~~~~~G~~W~~Ia~~l~gRt~~~~r~ 106 (261)
.|..++..+|..|..+|..| |=+..+|..
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 46666888999999999998 666655533
No 126
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=35.01 E-value=94 Score=23.39 Aligned_cols=81 Identities=10% Similarity=0.039 Sum_probs=47.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccc-ccccccc--ccCCCCc----cCCCCHHHHHHHHHHHHhcC
Q 024860 14 KGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKS-CRLRWMN--YLRPNIK----RGNYTKEEEDTIIRLHESLG 86 (261)
Q Consensus 14 k~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~q-cr~Rw~~--~L~p~i~----k~~WT~EED~~L~~~~~~~G 86 (261)
..+.|.++-..++.++. .|. .-.+||+.+|..++... ...+|.. .+.+... ....++++.+.|++++.+..
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~-s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~ 107 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGV-RPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNP 107 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTC-CHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHCcCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCc
Confidence 34689999888888884 454 77899999984432211 1122221 1222222 33578888888888887643
Q ss_pred -CchhHhhhcC
Q 024860 87 -NRWSAIAAQL 96 (261)
Q Consensus 87 -~~W~~Ia~~l 96 (261)
-.-..|+..|
T Consensus 108 ~~s~~~i~~~l 118 (149)
T 1k78_A 108 TMFAWEIRDRL 118 (149)
T ss_dssp TCCHHHHHHHH
T ss_pred chhHHHHHHHH
Confidence 2223455444
No 127
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=34.53 E-value=14 Score=29.11 Aligned_cols=53 Identities=32% Similarity=0.389 Sum_probs=34.0
Q ss_pred HHHHHHHHHhCC-------CCccccccccccccc----ccccccccccccCC--CCccCCCCHHHH
Q 024860 23 RKLIAYVTKYGY-------WNWRQLPKYAGLARC----GKSCRLRWMNYLRP--NIKRGNYTKEEE 75 (261)
Q Consensus 23 ~~L~~~V~~~g~-------~~W~~Ia~~~~~~R~----~~qcr~Rw~~~L~p--~i~k~~WT~EED 75 (261)
-+|..+|.+.|. ..|.+|+..+|...+ +.+++..|.++|.| ...+|.=.++|-
T Consensus 67 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~ 132 (145)
T 2kk0_A 67 FMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNEL 132 (145)
T ss_dssp HHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHH
T ss_pred HHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 357777777764 469999999985432 34677888888865 223344444443
No 128
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=34.10 E-value=68 Score=21.26 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHhcCCchhHhhhcCCCCCHHHHHHHHHHhhhh
Q 024860 70 YTKEEEDTIIRLHESLGNRWSAIAAQLPGRTDNEIKNHWHTSLKK 114 (261)
Q Consensus 70 WT~EED~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~ 114 (261)
.|+.|-+.| .++ ..|-.-..||..| |-+...|+.+....+++
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 556555554 444 5677889999999 88999999887766654
No 129
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=33.49 E-value=27 Score=28.37 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=16.9
Q ss_pred CcCCCCHHHHHHHH--------HHHHHhCC
Q 024860 13 KKGTWTPEEDRKLI--------AYVTKYGY 34 (261)
Q Consensus 13 kk~~WT~eED~~L~--------~~V~~~g~ 34 (261)
..|-||+|+|+.|. .+++|||.
T Consensus 113 ~pGIWT~eDDe~L~s~d~~dikrL~kKHG~ 142 (168)
T 3cz6_A 113 VPGIWTHDDDESLKSNDQEQIRKLVKKHGT 142 (168)
T ss_dssp CTTCCCHHHHHHHHSCCHHHHHHHHHHHCH
T ss_pred CCCCCChhhHHHHHcCCHHHHHHHHHHhCH
Confidence 46779999999876 46777764
No 130
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=32.53 E-value=77 Score=22.36 Aligned_cols=46 Identities=17% Similarity=0.103 Sum_probs=35.2
Q ss_pred cCCCCHHHHHHHHHHHHhcCCchhHhhhcCCCCCHHHHHHHHHHhhhhh
Q 024860 67 RGNYTKEEEDTIIRLHESLGNRWSAIAAQLPGRTDNEIKNHWHTSLKKR 115 (261)
Q Consensus 67 k~~WT~EED~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~ 115 (261)
....|+.|-+.|.-++ .|-.-.+||..| |-+...|+.+..+.+++-
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 4467888877665544 787889999999 999999999988877653
No 131
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=32.51 E-value=24 Score=25.48 Aligned_cols=39 Identities=23% Similarity=0.429 Sum_probs=27.6
Q ss_pred HHHHHHHhcCC--------chhHhhhcCCC----CCHHHHHHHHHHhhhhh
Q 024860 77 TIIRLHESLGN--------RWSAIAAQLPG----RTDNEIKNHWHTSLKKR 115 (261)
Q Consensus 77 ~L~~~~~~~G~--------~W~~Ia~~l~g----Rt~~~~r~Rw~~~lk~~ 115 (261)
.|..+|...|+ .|.+|+..|.- -.+..+|..|.++|-+-
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~y 90 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYPY 90 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHH
Confidence 46667777663 59999998721 12668899998888663
No 132
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=31.61 E-value=64 Score=21.08 Aligned_cols=33 Identities=12% Similarity=-0.000 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCCchhHhhhcCCCCCHHHHHH
Q 024860 73 EEEDTIIRLHESLGNRWSAIAAQLPGRTDNEIKN 106 (261)
Q Consensus 73 EED~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~r~ 106 (261)
-|.+.|.++...+|++.++.|+.| |=+...+..
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~r 51 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYR 51 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 477788899999999999999988 545444433
No 133
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=30.44 E-value=70 Score=24.83 Aligned_cols=29 Identities=14% Similarity=0.159 Sum_probs=23.4
Q ss_pred cCCchhHhhhcCCCCCHHHHHHHHHHhhhh
Q 024860 85 LGNRWSAIAAQLPGRTDNEIKNHWHTSLKK 114 (261)
Q Consensus 85 ~G~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~ 114 (261)
.|-....||..| |-+...++.+.+..+++
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 466799999999 88999998887766554
No 134
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=30.07 E-value=86 Score=23.76 Aligned_cols=45 Identities=13% Similarity=0.159 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcC-CchhHhhhcCCCCCHHHHHHHHHHhhhhhhhh
Q 024860 73 EEEDTIIRLHESLG-NRWSAIAAQLPGRTDNEIKNHWHTSLKKRLKR 118 (261)
Q Consensus 73 EED~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~~k~ 118 (261)
+-|..|+.+....| -.+..||+.+ |=+...|+.|...+.+..+-+
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 45667778877777 5799999999 889999999998887776543
No 135
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=29.94 E-value=68 Score=22.17 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHh----cCCchhHhhhcCCCCCHHHHHHHHHHhhhhh
Q 024860 71 TKEEEDTIIRLHES----LGNRWSAIAAQLPGRTDNEIKNHWHTSLKKR 115 (261)
Q Consensus 71 T~EED~~L~~~~~~----~G~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~ 115 (261)
++.|- .++.+.-- .|-.+..||..| |-+...|+.+-...+++-
T Consensus 20 ~~~er-~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 20 SPREA-MVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp CHHHH-HHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CHHHH-HHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 34444 44444443 466799999999 899999998876666543
No 136
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=28.94 E-value=86 Score=22.09 Aligned_cols=35 Identities=11% Similarity=0.054 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcCCchhHhhhcCCCCCHHHHHHH
Q 024860 72 KEEEDTIIRLHESLGNRWSAIAAQLPGRTDNEIKNH 107 (261)
Q Consensus 72 ~EED~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~r~R 107 (261)
.-|.+.|.++...+|++.++.|+.| |=+...+..+
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 3467788899999999999999988 6665555443
No 137
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=28.73 E-value=62 Score=23.91 Aligned_cols=31 Identities=29% Similarity=0.559 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCchhHhhhcCCCCCHHHHHH
Q 024860 75 EDTIIRLHESLGNRWSAIAAQLPGRTDNEIKN 106 (261)
Q Consensus 75 D~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~r~ 106 (261)
+..|-.+....|..|..+|.+| |=+..+|..
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 3455566778899999999999 766666544
No 138
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=28.53 E-value=82 Score=22.22 Aligned_cols=44 Identities=23% Similarity=0.120 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHhcCCchhHhhhcCCCCCHHHHHHHHHHhhhhh
Q 024860 69 NYTKEEEDTIIRLHESLGNRWSAIAAQLPGRTDNEIKNHWHTSLKKR 115 (261)
Q Consensus 69 ~WT~EED~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~ 115 (261)
..|+.|-+.|.- + ..|-.-.+||..| |-+...|+.+-...+++-
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 466666665554 4 6777789999999 889999999887766654
No 139
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=28.46 E-value=81 Score=21.58 Aligned_cols=43 Identities=30% Similarity=0.290 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHhcCCchhHhhhcCCCCCHHHHHHHHHHhhhh
Q 024860 69 NYTKEEEDTIIRLHESLGNRWSAIAAQLPGRTDNEIKNHWHTSLKK 114 (261)
Q Consensus 69 ~WT~EED~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~ 114 (261)
..|+.|-+.|.- + ..|-.-.+||..| |-+...|+.+-...+++
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 467777665554 4 5677889999999 89999999888766655
No 140
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=28.10 E-value=1.1e+02 Score=19.80 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCchhHhhhcCCCCCHHHHHHHHHHhhhh
Q 024860 68 GNYTKEEEDTIIRLHESLGNRWSAIAAQLPGRTDNEIKNHWHTSLKK 114 (261)
Q Consensus 68 ~~WT~EED~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~ 114 (261)
...|+.|-+.|.- + ..|..-.+||..| |-+...|+.+....+++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3467777766554 4 5677889999999 88999999888766554
No 141
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=27.26 E-value=46 Score=25.74 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=23.7
Q ss_pred cCCchhHhhhcCCCCCHHHHHHHHHHhhhhh
Q 024860 85 LGNRWSAIAAQLPGRTDNEIKNHWHTSLKKR 115 (261)
Q Consensus 85 ~G~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~ 115 (261)
.|-....||..| |-+...|+.+.+..+++-
T Consensus 150 ~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 179 (184)
T 2q1z_A 150 GDLTHRELAAET-GLPLGTIKSRIRLALDRL 179 (184)
T ss_dssp SCCSSCCSTTTC-CCCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 466788999988 888889988887766543
No 142
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=26.23 E-value=22 Score=28.24 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=26.8
Q ss_pred ccccccccccccccccccccccccCCCCccCCCCHHHHHHHHH
Q 024860 38 RQLPKYAGLARCGKSCRLRWMNYLRPNIKRGNYTKEEEDTIIR 80 (261)
Q Consensus 38 ~~Ia~~~~~~R~~~qcr~Rw~~~L~p~i~k~~WT~EED~~L~~ 80 (261)
..||..+. |++..+||..+. | ...+|+||++.|.+
T Consensus 119 ~~vA~~ik-gkt~eeir~~f~------I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIK-GKTPEEIRTTFN------I-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTT-TCCHHHHHHHTT------C-CCCCCHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 66777777 899999998763 3 23599999998764
No 143
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=26.09 E-value=79 Score=25.02 Aligned_cols=46 Identities=15% Similarity=0.240 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcC-CchhHhhhcCCCCCHHHHHHHHHHhhhhhhhh
Q 024860 72 KEEEDTIIRLHESLG-NRWSAIAAQLPGRTDNEIKNHWHTSLKKRLKR 118 (261)
Q Consensus 72 ~EED~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~~k~ 118 (261)
.+-|..|+.+....| -.+..||+.+ |-+...|+.|...+....+-+
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 72 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 355777888888777 5799999998 889999999998777666543
No 144
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=25.41 E-value=1.1e+02 Score=22.42 Aligned_cols=39 Identities=10% Similarity=0.067 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCchhHhhhcCCCCCHHHHHHHHHHhhhh
Q 024860 75 EDTIIRLHESLGNRWSAIAAQLPGRTDNEIKNHWHTSLKK 114 (261)
Q Consensus 75 D~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~ 114 (261)
+..++.++-..|-....||..| |-+...++.+-+..+++
T Consensus 30 ~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 30 QRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3445556666788899999999 88988888877665443
No 145
>2lkq_A Immunoglobulin lambda-like polypeptide 1; PRE-BCR, B cell development, immune system; NMR {Homo sapiens}
Probab=24.93 E-value=9.2 Score=20.91 Aligned_cols=18 Identities=44% Similarity=0.949 Sum_probs=12.6
Q ss_pred cccccccccccCCCCccCCCC
Q 024860 51 KSCRLRWMNYLRPNIKRGNYT 71 (261)
Q Consensus 51 ~qcr~Rw~~~L~p~i~k~~WT 71 (261)
.+.|.||-++| +.+|.||
T Consensus 3 sslrsrwgrfl---lqrgswt 20 (26)
T 2lkq_A 3 SSLRSRWGRFL---LQRGSWT 20 (26)
T ss_dssp TTTTTHHHHHT---HHHHTCC
T ss_pred hhHHHHHHHHH---HHcCCcc
Confidence 35677888776 5677776
No 146
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=24.73 E-value=68 Score=23.64 Aligned_cols=91 Identities=13% Similarity=0.075 Sum_probs=51.1
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccc----cc---------CCCC--ccCCCCHHHHHH
Q 024860 13 KKGTWTPEEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKSCRLRWMN----YL---------RPNI--KRGNYTKEEEDT 77 (261)
Q Consensus 13 kk~~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~qcr~Rw~~----~L---------~p~i--~k~~WT~EED~~ 77 (261)
++..+|.|+-..++.++...|...=.+||+.+|..++.. .+|.+ ++ ++.. .+..-.++-|+.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl---~~~~~~~~~~~~~~~~~~~~~~~~kr~r~~~~~~~E~~ 80 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTL---STILKNKRAILASERKYGVASTCRKTNKLSPYDKLEGL 80 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHH---HHHHHTHHHHHHHHHHHGGGGGTCCCCCCCTTHHHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHH---HHHHhchhhhcchhhhccccchhhcccCCCCCHHHHHH
Confidence 456799999999999997766522237898888644221 11211 11 1111 123355667888
Q ss_pred HHHHHHhcCCchhHhhhcCCCCCHHHHHHHHHHhhh
Q 024860 78 IIRLHESLGNRWSAIAAQLPGRTDNEIKNHWHTSLK 113 (261)
Q Consensus 78 L~~~~~~~G~~W~~Ia~~l~gRt~~~~r~Rw~~~lk 113 (261)
|+.++..... ..+| =|+..|+.....+..
T Consensus 81 L~~Wi~~~~~------~g~p-vs~~~I~~kA~~i~~ 109 (131)
T 1hlv_A 81 LIAWFQQIRA------AGLP-VKGIILKEKALRIAE 109 (131)
T ss_dssp HHHHHHHHGG------GTCC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------CCCC-CCHHHHHHHHHHHHH
Confidence 8888865431 1121 355556665555443
No 147
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=24.44 E-value=12 Score=29.60 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 024860 20 EEDRKLIAYVTKYGYWNWRQLPKYAGLARCGKSCRLRWMNYL 61 (261)
Q Consensus 20 eED~~L~~~V~~~g~~~W~~Ia~~~~~~R~~~qcr~Rw~~~L 61 (261)
+-|.+|+.++++.|.-.+.+||+.+| -+...|+.|..+..
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~ 42 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKME 42 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHH
Confidence 45888999999988889999999998 45556776666543
No 148
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=23.62 E-value=1e+02 Score=23.40 Aligned_cols=45 Identities=16% Similarity=0.241 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhcC-CchhHhhhcCCCCCHHHHHHHHHHhhhhhhhh
Q 024860 73 EEEDTIIRLHESLG-NRWSAIAAQLPGRTDNEIKNHWHTSLKKRLKR 118 (261)
Q Consensus 73 EED~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~~k~ 118 (261)
+-|..|+.+....| -.+..||+.+ |-+...|+.|...+....+-+
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 52 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 44667778777777 5799999999 889999999998887776543
No 149
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=23.31 E-value=1.2e+02 Score=18.91 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCchhHhhhcCCCCCHHHHHHHHHHhhhhh
Q 024860 76 DTIIRLHESLGNRWSAIAAQLPGRTDNEIKNHWHTSLKKR 115 (261)
Q Consensus 76 ~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~~ 115 (261)
..++.+ -..|-.-.+||..| |-+...++.+....+++-
T Consensus 4 ~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 4 RQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 344555 35576778999999 899999999887766553
No 150
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=22.67 E-value=1.1e+02 Score=24.31 Aligned_cols=33 Identities=12% Similarity=-0.019 Sum_probs=24.4
Q ss_pred HHHhcCCchhHhhhcCCCCCHHHHHHHHHHhhhh
Q 024860 81 LHESLGNRWSAIAAQLPGRTDNEIKNHWHTSLKK 114 (261)
Q Consensus 81 ~~~~~G~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~ 114 (261)
++-..|-....||..| |-+...|+.+.+..+++
T Consensus 198 l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 198 LIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3334567799999999 88988888877655443
No 151
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=21.32 E-value=1.3e+02 Score=17.23 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHHhcCCchhHhhhcCCCCCHHHHHHHH
Q 024860 69 NYTKEEEDTIIRLHESLGNRWSAIAAQLPGRTDNEIKNHW 108 (261)
Q Consensus 69 ~WT~EED~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~r~Rw 108 (261)
..++++-..++.++ .-|-....||+.| |-+...|+...
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 45667766676665 3576789999988 77777776543
No 152
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=21.17 E-value=1e+02 Score=22.88 Aligned_cols=30 Identities=27% Similarity=0.271 Sum_probs=23.1
Q ss_pred hcCCchhHhhhcCCCCCHHHHHHHHHHhhhh
Q 024860 84 SLGNRWSAIAAQLPGRTDNEIKNHWHTSLKK 114 (261)
Q Consensus 84 ~~G~~W~~Ia~~l~gRt~~~~r~Rw~~~lk~ 114 (261)
..|-....||..| |-+...|+.+.+..+++
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3466799999998 88888888887665443
Done!