Query 024861
Match_columns 261
No_of_seqs 259 out of 1109
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 07:58:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 8.3E-67 1.8E-71 497.5 22.4 240 6-255 11-261 (408)
2 KOG2288 Galactosyltransferases 100.0 2.2E-34 4.8E-39 259.9 11.6 126 130-256 8-134 (274)
3 PF13334 DUF4094: Domain of un 100.0 4.5E-33 9.8E-38 219.5 6.4 91 12-111 1-95 (95)
4 PLN03133 beta-1,3-galactosyltr 100.0 1.2E-29 2.6E-34 254.1 14.5 120 129-255 381-500 (636)
5 KOG2287 Galactosyltransferases 100.0 1.7E-28 3.8E-33 231.6 13.7 118 132-255 94-212 (349)
6 PF01762 Galactosyl_T: Galacto 99.9 7.1E-28 1.5E-32 208.1 10.4 104 147-255 1-105 (195)
7 PTZ00210 UDP-GlcNAc-dependent 99.9 9.3E-24 2E-28 200.3 10.6 129 129-257 76-226 (382)
8 PF02434 Fringe: Fringe-like; 98.8 1.1E-08 2.4E-13 93.0 6.7 104 134-256 7-112 (252)
9 KOG2246 Galactosyltransferases 98.6 9.1E-08 2E-12 91.8 7.3 102 129-256 87-194 (364)
10 PLN03153 hypothetical protein; 96.4 0.013 2.8E-07 59.0 8.5 113 130-256 119-236 (537)
11 PF13641 Glyco_tranf_2_3: Glyc 85.9 4 8.7E-05 34.6 7.6 105 135-255 3-111 (228)
12 TIGR03469 HonB hopene-associat 85.8 21 0.00045 34.0 13.2 34 221-254 123-157 (384)
13 cd04192 GT_2_like_e Subfamily 81.5 25 0.00055 29.3 10.7 52 199-253 54-105 (229)
14 TIGR03472 HpnI hopanoid biosyn 80.0 38 0.00083 32.0 12.5 108 133-254 41-150 (373)
15 PRK11204 N-glycosyltransferase 73.6 77 0.0017 30.1 12.7 105 133-254 54-158 (420)
16 KOG3708 Uncharacterized conser 69.0 8.6 0.00019 39.4 5.1 52 202-253 66-120 (681)
17 cd06423 CESA_like CESA_like is 66.8 55 0.0012 25.0 9.9 33 221-253 69-101 (180)
18 cd06434 GT2_HAS Hyaluronan syn 66.5 67 0.0015 27.1 9.6 55 195-255 48-102 (235)
19 cd04186 GT_2_like_c Subfamily 64.1 67 0.0014 25.0 10.5 26 228-253 72-97 (166)
20 cd04185 GT_2_like_b Subfamily 63.0 86 0.0019 25.9 10.5 37 217-254 67-103 (202)
21 COG4092 Predicted glycosyltran 62.6 37 0.0008 32.4 7.7 79 169-252 36-116 (346)
22 cd02525 Succinoglycan_BP_ExoA 62.1 96 0.0021 26.1 11.6 33 221-253 72-104 (249)
23 PF00535 Glycos_transf_2: Glyc 61.0 73 0.0016 24.4 11.4 61 188-253 41-101 (169)
24 TIGR01556 rhamnosyltran L-rham 57.3 73 0.0016 28.3 8.5 55 197-253 42-96 (281)
25 cd06439 CESA_like_1 CESA_like_ 55.0 1.4E+02 0.0029 25.6 12.8 108 130-254 26-133 (251)
26 PF13506 Glyco_transf_21: Glyc 54.4 28 0.0006 29.7 5.1 39 216-254 17-55 (175)
27 smart00786 SHR3_chaperone ER m 54.4 11 0.00023 33.9 2.6 29 12-40 6-40 (196)
28 PF08229 SHR3_chaperone: ER me 53.4 7.8 0.00017 34.7 1.6 29 12-40 6-40 (196)
29 cd04179 DPM_DPG-synthase_like 47.9 1.2E+02 0.0026 24.3 7.8 62 188-254 42-103 (185)
30 PF10111 Glyco_tranf_2_2: Glyc 46.5 1.9E+02 0.0041 26.1 9.6 78 169-253 32-111 (281)
31 cd06427 CESA_like_2 CESA_like_ 46.5 1.9E+02 0.0042 24.9 11.9 34 221-254 75-108 (241)
32 cd06421 CESA_CelA_like CESA_Ce 42.9 2E+02 0.0043 24.0 11.6 33 222-254 76-108 (234)
33 cd02526 GT2_RfbF_like RfbF is 42.9 1.4E+02 0.0031 25.1 7.8 52 199-252 46-97 (237)
34 cd04187 DPM1_like_bac Bacteria 42.0 1.9E+02 0.004 23.4 8.4 76 171-254 29-104 (181)
35 PF04666 Glyco_transf_54: N-Ac 41.7 1.3E+02 0.0028 28.5 7.8 22 230-251 169-190 (297)
36 cd04184 GT2_RfbC_Mx_like Myxoc 40.7 2E+02 0.0043 23.4 12.2 33 222-254 75-107 (202)
37 cd02520 Glucosylceramide_synth 40.2 2.2E+02 0.0047 23.7 12.2 78 172-254 31-110 (196)
38 PF06072 Herpes_US9: Alphaherp 40.0 30 0.00065 25.4 2.6 17 16-32 42-58 (60)
39 PF11119 DUF2633: Protein of u 39.8 35 0.00076 25.0 2.9 28 1-31 1-28 (59)
40 cd06435 CESA_NdvC_like NdvC_li 39.5 2.3E+02 0.0051 23.9 9.7 34 221-254 73-108 (236)
41 PRK14583 hmsR N-glycosyltransf 38.5 3.8E+02 0.0082 26.0 13.7 104 133-253 75-178 (444)
42 PF13712 Glyco_tranf_2_5: Glyc 36.8 50 0.0011 29.3 4.1 28 220-247 44-71 (217)
43 PF03071 GNT-I: GNT-I family; 33.7 1.5E+02 0.0033 29.7 7.2 36 221-256 178-217 (434)
44 cd06433 GT_2_WfgS_like WfgS an 32.5 63 0.0014 26.0 3.8 32 221-252 66-97 (202)
45 cd06420 GT2_Chondriotin_Pol_N 31.5 66 0.0014 25.9 3.7 35 221-255 70-104 (182)
46 cd04195 GT2_AmsE_like GT2_AmsE 31.2 2.9E+02 0.0063 22.5 11.1 62 187-254 43-104 (201)
47 PF09964 DUF2198: Uncharacteri 31.1 35 0.00076 26.1 1.8 22 13-34 46-67 (74)
48 TIGR03111 glyc2_xrt_Gpos1 puta 29.9 5.3E+02 0.011 25.1 12.8 33 221-253 122-154 (439)
49 cd02514 GT13_GLCNAC-TI GT13_GL 28.7 86 0.0019 30.1 4.5 36 211-246 78-113 (334)
50 PF03742 PetN: PetN ; InterPr 28.3 64 0.0014 20.5 2.3 23 11-33 4-26 (29)
51 cd02510 pp-GalNAc-T pp-GalNAc- 27.5 4.5E+02 0.0098 23.5 10.9 32 222-253 75-106 (299)
52 PF11772 EpuA: DNA-directed RN 26.9 56 0.0012 22.8 2.1 16 16-31 4-19 (47)
53 PLN02726 dolichyl-phosphate be 24.5 4.6E+02 0.01 22.6 12.2 34 221-254 84-117 (243)
54 PF12273 RCR: Chitin synthesis 24.4 44 0.00095 27.3 1.4 14 19-32 10-23 (130)
55 cd04188 DPG_synthase DPG_synth 23.6 4.3E+02 0.0093 22.0 8.5 76 171-254 30-106 (211)
56 cd04191 Glucan_BSP_ModH Glucan 22.7 5.7E+02 0.012 23.0 9.6 25 229-253 94-118 (254)
57 PRK10018 putative glycosyl tra 21.7 6.3E+02 0.014 23.1 11.1 33 222-254 77-109 (279)
58 PF04846 Herpes_pp38: Herpesvi 21.2 74 0.0016 23.6 1.9 22 11-33 15-36 (63)
59 PRK10984 DNA-binding transcrip 20.8 61 0.0013 27.2 1.6 37 66-109 86-122 (127)
60 cd06442 DPM1_like DPM1_like re 20.6 1.1E+02 0.0024 25.5 3.2 26 229-254 77-102 (224)
61 COG1215 Glycosyltransferases, 20.1 7.2E+02 0.016 23.2 10.4 107 133-254 54-161 (439)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=8.3e-67 Score=497.47 Aligned_cols=240 Identities=55% Similarity=0.861 Sum_probs=217.4
Q ss_pred CCcccccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCccccccccchhhhccccchhc-------cCChhHHHHHHHh
Q 024861 6 STTTIISTKWIPFVCLFCFALGILFSNLTWNPPESDGRPSLNVRRREQQVAVASTDCAKK-------AFQDQDVAKEVLK 78 (261)
Q Consensus 6 ~~~~~~~~~~~~~l~~~~~~~~~~~~~r~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~v~~ 78 (261)
++|+.||+||+++||++|||+|+|||||||..||+++ +..+..+++++++++++||++| +.+++|+|+||++
T Consensus 11 ~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 89 (408)
T PLN03193 11 SSRSVVSRKWTLLLCLGCFCAGMLFTDRMWTIPESKG-ISRTTVTEAERLKLVSEGCDPKTLYQKEVKRDSKDIIGEVSK 89 (408)
T ss_pred cccccccHHHHHHHHHHHHHHHHhhccccccCCcccc-ccccccchhhhhhhhccccccccccccccccchhHHHHHHhh
Confidence 4588999999999999999999999999999999887 5555568899999999999853 3589999999999
Q ss_pred hhcccccCCcccchhhhhhHHHHHHHHhhhccCCCCCCCCCCccc----cCCCCCCCCeeEEEEEeCCCCCHHHHHHHHh
Q 024861 79 TRGAIHDGSVESDRTLDKTIGQLQMELAASRSGREMPGLESSAAN----ASTNSRRPKVFVVIGINTAFSSRKRRDSVRD 154 (261)
Q Consensus 79 t~~~i~~~~~~~~~~~~k~~~~lemela~~~~~~~~~~~~~~~~~----~~~~~~~~~~~lvI~V~Sap~n~~rR~aIR~ 154 (261)
||+||+ +|||+|++||||||+||+.++.. .++.|.+ ......++++++||+|+|+|+|++||++||+
T Consensus 90 t~~~~~--------~~~~~~~~le~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR~ 160 (408)
T PLN03193 90 THNAIQ--------TLDKTISNLEMELAAARAAQESI-LNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRA 160 (408)
T ss_pred HHHHHH--------HHhhhhhHHhHHHHHHHhhhhhh-ccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHHH
Confidence 999999 99999999999999999987754 5555543 1233567789999999999999999999999
Q ss_pred hhcCCcchhhhhhcCCCEEEEEEeecCCCCCchhHHhhHHhhhcCCCeEEEeccCCCCChHHHHHHHHHHHhhcCCccEE
Q 024861 155 TWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFY 234 (261)
Q Consensus 155 TW~~~~~~l~kLe~~~gi~vrFVIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~adF~ 234 (261)
|||++++.+.+++..++++++||||++.++++.++++|++|+++|||||++||+|+|.|||.||+++|+|+.++|+|+||
T Consensus 161 TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~ 240 (408)
T PLN03193 161 TWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFY 240 (408)
T ss_pred HHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEE
Confidence 99998877777877899999999999987678899999999999999999999999999999999999999999999999
Q ss_pred EEeCCceEEehHHHHHHHhhc
Q 024861 235 VKVDDDVHVNLGICFCNLSIL 255 (261)
Q Consensus 235 lKvDDDvfVnl~~L~~~L~~~ 255 (261)
+|+|||+|||+++|+.+|+++
T Consensus 241 mK~DDDvfVnv~~L~~~L~~~ 261 (408)
T PLN03193 241 VKVDDDVHVNIATLGETLVRH 261 (408)
T ss_pred EEcCCCceEcHHHHHHHHHhc
Confidence 999999999999999999765
No 2
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-34 Score=259.93 Aligned_cols=126 Identities=66% Similarity=0.951 Sum_probs=121.7
Q ss_pred CCCeeEEEEEeCCCCCHHHHHHHHhhhcCCcchhhhhhcCCCEEEEEEeecCCCCCchhHHhhHHhhhcCCCeEEEe-cc
Q 024861 130 RPKVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLE-HI 208 (261)
Q Consensus 130 ~~~~~lvI~V~Sap~n~~rR~aIR~TW~~~~~~l~kLe~~~gi~vrFVIG~s~~~~~~l~~~I~~E~~~ygDIL~ld-~~ 208 (261)
+++++++|||.|+|++.+||+++|+||||.++.++++++++||.+|||||+ ++.+++++++|++|+++|+|+|+|| |+
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~-~~~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGT-ATLGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEecc-CCccHHHHHHHHHHHHhcCCeEeechhH
Confidence 779999999999999999999999999999999999999999999999999 4578999999999999999999999 99
Q ss_pred CCCCChHHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhhcc
Q 024861 209 EGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGICFCNLSILL 256 (261)
Q Consensus 209 DsY~nLt~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~~~p 256 (261)
|+|.+|+.||+.+|.||+++|+++||+|+|||+|||++.|...|++|+
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r 134 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARER 134 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999764
No 3
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=99.98 E-value=4.5e-33 Score=219.51 Aligned_cols=91 Identities=42% Similarity=0.706 Sum_probs=83.0
Q ss_pred cchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCccc-cccccchhhhccccchhc---cCChhHHHHHHHhhhcccccCC
Q 024861 12 STKWIPFVCLFCFALGILFSNLTWNPPESDGRPSLN-VRRREQQVAVASTDCAKK---AFQDQDVAKEVLKTRGAIHDGS 87 (261)
Q Consensus 12 ~~~~~~~l~~~~~~~~~~~~~r~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~t~~~i~~~~ 87 (261)
|+||+++||+||||+|+|||||||..||+++ +.+. .+..+++++++++||++| +.+++|+|+||+|||++||
T Consensus 1 S~kw~l~Lc~~SF~~G~lft~R~W~~pe~~~-~~~~~~~~~~~~l~l~s~~c~~k~~~~~~~~di~~eV~kTh~aIq--- 76 (95)
T PF13334_consen 1 SRKWVLLLCIASFCAGMLFTNRMWTVPESKE-ISRRSSQDAEERLQLVSEDCDPKKLKESDQRDIMGEVSKTHEAIQ--- 76 (95)
T ss_pred CchHHHHHHHHHHHHHHHHhcccccCCcccc-chhhhccccccccccccccccccccccCCccchhHHHHHHHHHHH---
Confidence 6799999999999999999999999999987 5544 457789999999999965 4799999999999999999
Q ss_pred cccchhhhhhHHHHHHHHhhhccC
Q 024861 88 VESDRTLDKTIGQLQMELAASRSG 111 (261)
Q Consensus 88 ~~~~~~~~k~~~~lemela~~~~~ 111 (261)
+|||+||+||||||+||++
T Consensus 77 -----~LdKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 77 -----SLDKTISSLEMELAAARAE 95 (95)
T ss_pred -----HHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999983
No 4
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=99.96 E-value=1.2e-29 Score=254.14 Aligned_cols=120 Identities=23% Similarity=0.356 Sum_probs=108.8
Q ss_pred CCCCeeEEEEEeCCCCCHHHHHHHHhhhcCCcchhhhhhcCCCEEEEEEeecCCCCCchhHHhhHHhhhcCCCeEEEecc
Q 024861 129 RRPKVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHI 208 (261)
Q Consensus 129 ~~~~~~lvI~V~Sap~n~~rR~aIR~TW~~~~~~l~kLe~~~gi~vrFVIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~~ 208 (261)
+.++++|+|+|+|+|+|++||++||+|||+... . ...++.++|++|.+. ++.++..|++|+++|||||++||.
T Consensus 381 ~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~----~-~~~~v~~rFvVG~s~--n~~l~~~L~~Ea~~ygDIIq~dF~ 453 (636)
T PLN03133 381 PKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDA----V-RSGAVAVRFFVGLHK--NQMVNEELWNEARTYGDIQLMPFV 453 (636)
T ss_pred CCCceEEEEEEeCCcccHHHHHHHHHhhccccc----c-CCCceEEEEEEecCC--cHHHHHHHHHHHHHcCCeEEEeee
Confidence 356789999999999999999999999998642 1 245689999999986 467899999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhhc
Q 024861 209 EGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGICFCNLSIL 255 (261)
Q Consensus 209 DsY~nLt~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~~~ 255 (261)
|+|+|||+||++++.|+..|++++|++|+|||+|||+++|+.+|+..
T Consensus 454 DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~ 500 (636)
T PLN03133 454 DYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRT 500 (636)
T ss_pred chhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhc
Confidence 99999999999999999989999999999999999999999999764
No 5
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.7e-28 Score=231.63 Aligned_cols=118 Identities=25% Similarity=0.374 Sum_probs=109.2
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHhhhcCCcchhhhhhcCCCEEEEEEeecCCCCCchhHHhhHHhhhcCCCeEEEeccCCC
Q 024861 132 KVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGY 211 (261)
Q Consensus 132 ~~~lvI~V~Sap~n~~rR~aIR~TW~~~~~~l~kLe~~~gi~vrFVIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~~DsY 211 (261)
.++++++|.|++++++||++||+|||+... ..+..++++|++|.+++.+ .++..+.+|++.|||||+.||.|+|
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~-----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~df~Dty 167 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENN-----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQVDFEDTY 167 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccc-----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEEecccch
Confidence 489999999999999999999999999863 2356799999999987644 6788999999999999999999999
Q ss_pred CChHHHHHHHHHHHhh-cCCccEEEEeCCceEEehHHHHHHHhhc
Q 024861 212 HELSAKTKIFFSTAVA-KWDADFYVKVDDDVHVNLGICFCNLSIL 255 (261)
Q Consensus 212 ~nLt~Ktl~~f~wa~~-~~~adF~lKvDDDvfVnl~~L~~~L~~~ 255 (261)
+|||+|+++++.|+.. |++|+|++|+|||+|||+++|..+|..+
T Consensus 168 ~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~ 212 (349)
T KOG2287|consen 168 FNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKL 212 (349)
T ss_pred hchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhcc
Confidence 9999999999999998 7799999999999999999999999988
No 6
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=99.95 E-value=7.1e-28 Score=208.08 Aligned_cols=104 Identities=31% Similarity=0.447 Sum_probs=94.9
Q ss_pred HHHHHHHhhhcCCcchhhhhhcCCCEEEEEEeecCCCCCchhHHhhHHhhhcCCCeEEEeccCCCCChHHHHHHHHHHHh
Q 024861 147 KRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAV 226 (261)
Q Consensus 147 ~rR~aIR~TW~~~~~~l~kLe~~~gi~vrFVIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~ 226 (261)
+||++||+||++... ....++.++||+|.+++.+..++..|.+|+++|+|||++||.|+|+|||+|++++|+|+.
T Consensus 1 ~rR~~IR~TW~~~~~-----~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~ 75 (195)
T PF01762_consen 1 ERRQAIRETWGNQRN-----FKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWAS 75 (195)
T ss_pred ChHHHHHHHHhcccc-----cCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHH
Confidence 589999999999753 124789999999999865678888999999999999999999999999999999999999
Q ss_pred hcC-CccEEEEeCCceEEehHHHHHHHhhc
Q 024861 227 AKW-DADFYVKVDDDVHVNLGICFCNLSIL 255 (261)
Q Consensus 227 ~~~-~adF~lKvDDDvfVnl~~L~~~L~~~ 255 (261)
++| +++|++|+|||+|||+++|..+|..+
T Consensus 76 ~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~ 105 (195)
T PF01762_consen 76 KHCPNAKYVLKVDDDVFVNPDRLVSFLKSL 105 (195)
T ss_pred hhCCchhheeecCcEEEEehHHhhhhhhhc
Confidence 955 59999999999999999999999987
No 7
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=99.90 E-value=9.3e-24 Score=200.27 Aligned_cols=129 Identities=19% Similarity=0.316 Sum_probs=113.6
Q ss_pred CCCCeeEEEEEeCCCCC--HHHHHHHHhhhcCCcc-hhhhhhcCCCEEEEEEeecCCCCCchhHHhhHHhhhcCCCeEEE
Q 024861 129 RRPKVFVVIGINTAFSS--RKRRDSVRDTWMPQGE-KLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRL 205 (261)
Q Consensus 129 ~~~~~~lvI~V~Sap~n--~~rR~aIR~TW~~~~~-~l~kLe~~~gi~vrFVIG~s~~~~~~l~~~I~~E~~~ygDIL~l 205 (261)
.++++++++||.|..++ +.||++.|+||++-.. +.+.+.....+.++|++|.+++.+-+.+.++.+|+++|||||++
T Consensus 76 ~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVil 155 (382)
T PTZ00210 76 KAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIITL 155 (382)
T ss_pred ccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEEE
Confidence 46789999999999998 8999999999998542 33344445668889999999887779999999999999999999
Q ss_pred ec------------------cCCCCChHHHHHHHHHHHhh-cCCccEEEEeCCceEEehHHHHHHHhhccc
Q 024861 206 EH------------------IEGYHELSAKTKIFFSTAVA-KWDADFYVKVDDDVHVNLGICFCNLSILLF 257 (261)
Q Consensus 206 d~------------------~DsY~nLt~Ktl~~f~wa~~-~~~adF~lKvDDDvfVnl~~L~~~L~~~p~ 257 (261)
|| .|+|.++|.||+++|+|+.. |++++|++|+|||+|||++.++++|+..|.
T Consensus 156 pf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~pr 226 (382)
T PTZ00210 156 PTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVMPR 226 (382)
T ss_pred ecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhCCC
Confidence 99 67778899999999999999 559999999999999999999999987764
No 8
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=98.78 E-value=1.1e-08 Score=93.04 Aligned_cols=104 Identities=18% Similarity=0.224 Sum_probs=57.0
Q ss_pred eEEEEEeCCCCCHHHH-HHHHhhhcCCcchhhhhhcCCCEEEEEEeecCCCCCchhHHhhHHhhhcCCCeEEEeccCCCC
Q 024861 134 FVVIGINTAFSSRKRR-DSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYH 212 (261)
Q Consensus 134 ~lvI~V~Sap~n~~rR-~aIR~TW~~~~~~l~kLe~~~gi~vrFVIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~~DsY~ 212 (261)
.++|+|+|++.+.+.| .+|++||++... .. .|+..... +..+..+ ...+++.-+...++.
T Consensus 7 dI~i~V~T~~k~h~tR~~~I~~TW~~~~~---------~~--~~ifsd~~------d~~l~~~--~~~~l~~~~~~~~~~ 67 (252)
T PF02434_consen 7 DIFIAVKTTKKFHKTRAPAIKQTWAKRCN---------KQ--TFIFSDAE------DPSLPTV--TGVHLVNPNCDAGHC 67 (252)
T ss_dssp GEEEEEE--GGGTTTTHHHHHHTGGGGSG---------GG--EEEEESS--------HHHHHH--HGGGEEE--------
T ss_pred cEEEEEEeCHHHHHHHHHHHHHHHHhhcC---------Cc--eEEecCcc------ccccccc--cccccccCCCcchhh
Confidence 6899999999876555 999999999763 11 34332221 1222222 223444444555554
Q ss_pred ChHHHHHHHHHHHhh-cCCccEEEEeCCceEEehHHHHHHHhhcc
Q 024861 213 ELSAKTKIFFSTAVA-KWDADFYVKVDDDVHVNLGICFCNLSILL 256 (261)
Q Consensus 213 nLt~Ktl~~f~wa~~-~~~adF~lKvDDDvfVnl~~L~~~L~~~p 256 (261)
...++.++.+.+... ..+++|++++|||+||++++|..+|..+.
T Consensus 68 ~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~ 112 (252)
T PF02434_consen 68 RKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYD 112 (252)
T ss_dssp -----HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCC
Confidence 444455544444322 35889999999999999999999999865
No 9
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=98.60 E-value=9.1e-08 Score=91.76 Aligned_cols=102 Identities=25% Similarity=0.314 Sum_probs=80.5
Q ss_pred CCCCeeEEEEEeCCCCCHHHH-HHHHhhhcCCcchhhhhhcCCCEEEEEEe---ecCCCCCchhHHhhHHhhhcCCCeEE
Q 024861 129 RRPKVFVVIGINTAFSSRKRR-DSVRDTWMPQGEKLIQLEREKGIIIRFMI---GHSATSNSILDKAIDSEDAQHKDFLR 204 (261)
Q Consensus 129 ~~~~~~lvI~V~Sap~n~~rR-~aIR~TW~~~~~~l~kLe~~~gi~vrFVI---G~s~~~~~~l~~~I~~E~~~ygDIL~ 204 (261)
-.++..+++.|+|++.+...| +.+=+||++.++ ++ .|+- +.. ...+. .|.
T Consensus 87 l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~--------~~---~f~s~~~s~~--------------~~~f~-~v~ 140 (364)
T KOG2246|consen 87 LSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCD--------KG---IFFSPTLSKD--------------DSRFP-TVY 140 (364)
T ss_pred cCCCceEEEEEEecCcCceeehhhhhcccccccC--------cc---eecCccCCCC--------------CCcCc-eee
Confidence 356778999999999888777 699999998864 22 2333 221 11122 336
Q ss_pred EeccCCCCChHHHHHHHHHHHhhc--CCccEEEEeCCceEEehHHHHHHHhhcc
Q 024861 205 LEHIEGYHELSAKTKIFFSTAVAK--WDADFYVKVDDDVHVNLGICFCNLSILL 256 (261)
Q Consensus 205 ld~~DsY~nLt~Ktl~~f~wa~~~--~~adF~lKvDDDvfVnl~~L~~~L~~~p 256 (261)
.+..|+|+++..||..+|++...+ -+++|++|+|||+|+.+++|..+|..+.
T Consensus 141 ~~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yD 194 (364)
T KOG2246|consen 141 YNLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYD 194 (364)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcC
Confidence 788999999999999999999853 4899999999999999999999999864
No 10
>PLN03153 hypothetical protein; Provisional
Probab=96.43 E-value=0.013 Score=59.00 Aligned_cols=113 Identities=19% Similarity=0.171 Sum_probs=60.0
Q ss_pred CCCeeEEEEEeCCCCCHH-HHHHHHhhhcCCcchhhhhhcCCCEEEEEEeecCCCCCchhHHhhHHhhhcCCCeEEEecc
Q 024861 130 RPKVFVVIGINTAFSSRK-RRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHI 208 (261)
Q Consensus 130 ~~~~~lvI~V~Sap~n~~-rR~aIR~TW~~~~~~l~kLe~~~gi~vrFVIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~~ 208 (261)
..--.++++|.++....+ |+..|+.+|.+.. -.| .+|+.....+. ..+..+-. ...-.|.=.+.+
T Consensus 119 t~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~--------~rg--~v~ld~~~~~~--~~~~~~P~-i~is~d~s~f~y- 184 (537)
T PLN03153 119 LSLNHIMFGIAGSSQLWKRRKELVRLWWRPNQ--------MRG--HVWLEEQVSPE--EGDDSLPP-IMVSEDTSRFRY- 184 (537)
T ss_pred CccccEEEEEEEchhhhhhhhhhhhhhcCccc--------cee--EEEecccCCCC--CCcCCCCC-EEeCCCcccccc-
Confidence 334578999999988775 5599999999753 112 23443332110 00000000 000011101111
Q ss_pred CCCCChHHHHHH--HHHHHhh--cCCccEEEEeCCceEEehHHHHHHHhhcc
Q 024861 209 EGYHELSAKTKI--FFSTAVA--KWDADFYVKVDDDVHVNLGICFCNLSILL 256 (261)
Q Consensus 209 DsY~nLt~Ktl~--~f~wa~~--~~~adF~lKvDDDvfVnl~~L~~~L~~~p 256 (261)
+...+....... +...+.. .++++||+++|||+|+.+++|+.+|..+.
T Consensus 185 ~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YD 236 (537)
T PLN03153 185 TNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYD 236 (537)
T ss_pred cCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcC
Confidence 111122221111 2222223 57999999999999999999999998754
No 11
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=85.87 E-value=4 Score=34.64 Aligned_cols=105 Identities=12% Similarity=0.068 Sum_probs=50.8
Q ss_pred EEEEEeCCCCCHHHHHHHHhhhcCCcchhhhhhcCCCEEEEEEeecCCCCCchhHHhhHHhhhcCCCe--EEEeccCCCC
Q 024861 135 VVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDF--LRLEHIEGYH 212 (261)
Q Consensus 135 lvI~V~Sap~n~~rR~aIR~TW~~~~~~l~kLe~~~gi~vrFVIG~s~~~~~~l~~~I~~E~~~ygDI--L~ld~~DsY~ 212 (261)
+.|+|.+.-....-++.++.--... . ..+.+.++...+. +.....+++-.+.|... -.+... .
T Consensus 3 v~Vvip~~~~~~~l~~~l~sl~~~~--------~-~~~~v~vvd~~~~---~~~~~~~~~~~~~~~~~~v~vi~~~---~ 67 (228)
T PF13641_consen 3 VSVVIPAYNEDDVLRRCLESLLAQD--------Y-PRLEVVVVDDGSD---DETAEILRALAARYPRVRVRVIRRP---R 67 (228)
T ss_dssp EEEE--BSS-HHHHHHHHHHHTTSH--------H-HTEEEEEEEE-SS---S-GCTTHHHHHHTTGG-GEEEEE------
T ss_pred EEEEEEecCCHHHHHHHHHHHHcCC--------C-CCeEEEEEECCCC---hHHHHHHHHHHHHcCCCceEEeecC---C
Confidence 5566666555445555555544321 1 2255544443332 23333455545556543 223222 2
Q ss_pred ChH--HHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhhc
Q 024861 213 ELS--AKTKIFFSTAVAKWDADFYVKVDDDVHVNLGICFCNLSIL 255 (261)
Q Consensus 213 nLt--~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~~~ 255 (261)
|.. .|.. .+.++.+..+.+|++.+|||+.+..+.|..++...
T Consensus 68 ~~g~~~k~~-a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~ 111 (228)
T PF13641_consen 68 NPGPGGKAR-ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAF 111 (228)
T ss_dssp -HHHHHHHH-HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHH
T ss_pred CCCcchHHH-HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHH
Confidence 232 2333 45666666789999999999999999888877654
No 12
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=85.82 E-value=21 Score=34.02 Aligned_cols=34 Identities=15% Similarity=0.008 Sum_probs=25.4
Q ss_pred HHHHHhh-cCCccEEEEeCCceEEehHHHHHHHhh
Q 024861 221 FFSTAVA-KWDADFYVKVDDDVHVNLGICFCNLSI 254 (261)
Q Consensus 221 ~f~wa~~-~~~adF~lKvDDDvfVnl~~L~~~L~~ 254 (261)
+++.+.+ ..+.+|++..|+|+.+..+.|...++.
T Consensus 123 g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~ 157 (384)
T TIGR03469 123 GIAAARTLAPPADYLLLTDADIAHGPDNLARLVAR 157 (384)
T ss_pred HHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHH
Confidence 5555543 234899999999999998887777653
No 13
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=81.47 E-value=25 Score=29.31 Aligned_cols=52 Identities=17% Similarity=0.097 Sum_probs=35.3
Q ss_pred CCCeEEEeccCCCCChHHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHh
Q 024861 199 HKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGICFCNLS 253 (261)
Q Consensus 199 ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~ 253 (261)
+.-+..++..+.+ +. .|. .++.++......+|++.+|+|..+..+.|..++.
T Consensus 54 ~~~v~~~~~~~~~-~~-g~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~~ 105 (229)
T cd04192 54 NFQLKILNNSRVS-IS-GKK-NALTTAIKAAKGDWIVTTDADCVVPSNWLLTFVA 105 (229)
T ss_pred CcceEEeeccCcc-cc-hhH-HHHHHHHHHhcCCEEEEECCCcccCHHHHHHHHH
Confidence 3445666554422 22 333 3346666667899999999999999888888776
No 14
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=80.03 E-value=38 Score=32.03 Aligned_cols=108 Identities=13% Similarity=0.076 Sum_probs=57.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHhhhcCCcchhhhhhcCCCEEEEEEeecCCCCCchhHHhhHHhhhcCCC--eEEEeccCC
Q 024861 133 VFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKD--FLRLEHIEG 210 (261)
Q Consensus 133 ~~lvI~V~Sap~n~~rR~aIR~TW~~~~~~l~kLe~~~gi~vrFVIG~s~~~~~~l~~~I~~E~~~ygD--IL~ld~~Ds 210 (261)
+.+-|+|.+.-....-.+.++ +...+. -..+.|.|+...+. ++.. ..+++=.++|.+ +..+.-.+.
T Consensus 41 p~VSViiP~~nee~~l~~~L~-Sl~~q~--------Yp~~EIivvdd~s~--D~t~-~iv~~~~~~~p~~~i~~v~~~~~ 108 (373)
T TIGR03472 41 PPVSVLKPLHGDEPELYENLA-SFCRQD--------YPGFQMLFGVQDPD--DPAL-AVVRRLRADFPDADIDLVIDARR 108 (373)
T ss_pred CCeEEEEECCCCChhHHHHHH-HHHhcC--------CCCeEEEEEeCCCC--CcHH-HHHHHHHHhCCCCceEEEECCCC
Confidence 345555665554444445554 233322 12366766665443 2222 223322345665 322321111
Q ss_pred CCChHHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhh
Q 024861 211 YHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGICFCNLSI 254 (261)
Q Consensus 211 Y~nLt~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~~ 254 (261)
.....|.-...+ +.+..+.+|++..|+|+.+..+.|...+..
T Consensus 109 -~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~ 150 (373)
T TIGR03472 109 -HGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYLRQVVAP 150 (373)
T ss_pred -CCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHHHHHHHH
Confidence 122346544433 445568999999999999999988877654
No 15
>PRK11204 N-glycosyltransferase; Provisional
Probab=73.60 E-value=77 Score=30.06 Aligned_cols=105 Identities=15% Similarity=0.081 Sum_probs=58.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHhhhcCCcchhhhhhcCCCEEEEEEeecCCCCCchhHHhhHHhhhcCCCeEEEeccCCCC
Q 024861 133 VFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYH 212 (261)
Q Consensus 133 ~~lvI~V~Sap~n~~rR~aIR~TW~~~~~~l~kLe~~~gi~vrFVIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~~DsY~ 212 (261)
+.+-|+|.+.-... .|+++-..-. +.. -....+ +|+..+.+ +.....+++..++|..+..++..++
T Consensus 54 p~vsViIp~yne~~----~i~~~l~sl~----~q~-yp~~ei-iVvdD~s~--d~t~~~l~~~~~~~~~v~~i~~~~n-- 119 (420)
T PRK11204 54 PGVSILVPCYNEGE----NVEETISHLL----ALR-YPNYEV-IAINDGSS--DNTGEILDRLAAQIPRLRVIHLAEN-- 119 (420)
T ss_pred CCEEEEEecCCCHH----HHHHHHHHHH----hCC-CCCeEE-EEEECCCC--ccHHHHHHHHHHhCCcEEEEEcCCC--
Confidence 45666666655443 3444433211 010 123444 44444332 2334445555566666666654332
Q ss_pred ChHHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhh
Q 024861 213 ELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGICFCNLSI 254 (261)
Q Consensus 213 nLt~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~~ 254 (261)
. .|. .++..+.+..+.+|++..|+|..+..+.|..+++.
T Consensus 120 -~-Gka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~ 158 (420)
T PRK11204 120 -Q-GKA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEH 158 (420)
T ss_pred -C-CHH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHH
Confidence 2 243 34566666678999999999999999877776653
No 16
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.97 E-value=8.6 Score=39.36 Aligned_cols=52 Identities=15% Similarity=0.207 Sum_probs=35.8
Q ss_pred eEEEeccCCCCChHHHHHH-HHHHHhhcC--CccEEEEeCCceEEehHHHHHHHh
Q 024861 202 FLRLEHIEGYHELSAKTKI-FFSTAVAKW--DADFYVKVDDDVHVNLGICFCNLS 253 (261)
Q Consensus 202 IL~ld~~DsY~nLt~Ktl~-~f~wa~~~~--~adF~lKvDDDvfVnl~~L~~~L~ 253 (261)
.-+++.+..|..-..|+.. -+.+..++. ++||++-+-|++|||...|+.++-
T Consensus 66 ~a~~~~vs~~d~r~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~ 120 (681)
T KOG3708|consen 66 LAQLTNVSPYDLRGQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLID 120 (681)
T ss_pred HhhccccCccccCccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHh
Confidence 3344445555544555543 445555533 899999999999999999998764
No 17
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=66.83 E-value=55 Score=25.00 Aligned_cols=33 Identities=12% Similarity=0.067 Sum_probs=25.6
Q ss_pred HHHHHhhcCCccEEEEeCCceEEehHHHHHHHh
Q 024861 221 FFSTAVAKWDADFYVKVDDDVHVNLGICFCNLS 253 (261)
Q Consensus 221 ~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~ 253 (261)
...++.+..+.+|++.+|+|..+..+.|..++.
T Consensus 69 ~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~ 101 (180)
T cd06423 69 ALNAGLRHAKGDIVVVLDADTILEPDALKRLVV 101 (180)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcChHHHHHHHH
Confidence 345555656999999999999999887776633
No 18
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=66.51 E-value=67 Score=27.10 Aligned_cols=55 Identities=11% Similarity=0.101 Sum_probs=35.7
Q ss_pred hhhcCCCeEEEeccCCCCChHHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhhc
Q 024861 195 EDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGICFCNLSIL 255 (261)
Q Consensus 195 E~~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~~~ 255 (261)
+...+..+.+.. .+. ..|.. ++..+....+.+|++.+|+|+.+..+.|...+...
T Consensus 48 ~~~~~~~~~v~~-~~~----~g~~~-a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l~~~~ 102 (235)
T cd06434 48 QTVKYGGIFVIT-VPH----PGKRR-ALAEGIRHVTTDIVVLLDSDTVWPPNALPEMLKPF 102 (235)
T ss_pred hhccCCcEEEEe-cCC----CChHH-HHHHHHHHhCCCEEEEECCCceeChhHHHHHHHhc
Confidence 455666666654 222 12332 23444444589999999999999999887777543
No 19
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=64.11 E-value=67 Score=24.97 Aligned_cols=26 Identities=19% Similarity=0.255 Sum_probs=22.4
Q ss_pred cCCccEEEEeCCceEEehHHHHHHHh
Q 024861 228 KWDADFYVKVDDDVHVNLGICFCNLS 253 (261)
Q Consensus 228 ~~~adF~lKvDDDvfVnl~~L~~~L~ 253 (261)
..+.+|++..|||..+..+.+..++.
T Consensus 72 ~~~~~~i~~~D~D~~~~~~~l~~~~~ 97 (166)
T cd04186 72 EAKGDYVLLLNPDTVVEPGALLELLD 97 (166)
T ss_pred hCCCCEEEEECCCcEECccHHHHHHH
Confidence 34899999999999999888877765
No 20
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=62.98 E-value=86 Score=25.88 Aligned_cols=37 Identities=16% Similarity=-0.059 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhh
Q 024861 217 KTKIFFSTAVAKWDADFYVKVDDDVHVNLGICFCNLSI 254 (261)
Q Consensus 217 Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~~ 254 (261)
-.-.+++++. ..+.+|++..|||..+..+.|..++..
T Consensus 67 ~~n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~ 103 (202)
T cd04185 67 GFYEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAY 103 (202)
T ss_pred HHHHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHH
Confidence 3345666766 568999999999999998777666544
No 21
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=62.63 E-value=37 Score=32.37 Aligned_cols=79 Identities=14% Similarity=0.066 Sum_probs=59.8
Q ss_pred CCCEEEEEEeecCCCCCchhHHhhHHhhhcCCCeEEEec--cCCCCChHHHHHHHHHHHhhcCCccEEEEeCCceEEehH
Q 024861 169 EKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEH--IEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLG 246 (261)
Q Consensus 169 ~~gi~vrFVIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~--~DsY~nLt~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~ 246 (261)
..++.+.|+=|.+ ..++.|..=.....-.+.+++ .+.+...+.-...+..|+.+.|...+++..|=|+|...+
T Consensus 36 ~~~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~d 110 (346)
T COG4092 36 SDITMVICLRAHE-----VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSSD 110 (346)
T ss_pred cccEEEEEEecch-----hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccHH
Confidence 4455565665553 466777777777777888885 455555455556688888888999999999999999999
Q ss_pred HHHHHH
Q 024861 247 ICFCNL 252 (261)
Q Consensus 247 ~L~~~L 252 (261)
+..++|
T Consensus 111 nF~k~l 116 (346)
T COG4092 111 NFAKML 116 (346)
T ss_pred HHHHHH
Confidence 999988
No 22
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=62.08 E-value=96 Score=26.12 Aligned_cols=33 Identities=9% Similarity=0.074 Sum_probs=26.5
Q ss_pred HHHHHhhcCCccEEEEeCCceEEehHHHHHHHh
Q 024861 221 FFSTAVAKWDADFYVKVDDDVHVNLGICFCNLS 253 (261)
Q Consensus 221 ~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~ 253 (261)
++..+.+....+|++.+|||..+.++.|..+++
T Consensus 72 a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~~~~ 104 (249)
T cd02525 72 GLNIGIRNSRGDIIIRVDAHAVYPKDYILELVE 104 (249)
T ss_pred HHHHHHHHhCCCEEEEECCCccCCHHHHHHHHH
Confidence 456666655899999999999999887777774
No 23
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=60.97 E-value=73 Score=24.41 Aligned_cols=61 Identities=10% Similarity=0.076 Sum_probs=34.2
Q ss_pred hHHhhHHhhhcCCCeEEEeccCCCCChHHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHh
Q 024861 188 LDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGICFCNLS 253 (261)
Q Consensus 188 l~~~I~~E~~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~ 253 (261)
....+.+-.+....+..+...+.. .+..-.-.++ +....+|++.+|||.++..+.|..+++
T Consensus 41 ~~~~~~~~~~~~~~i~~i~~~~n~-g~~~~~n~~~----~~a~~~~i~~ld~D~~~~~~~l~~l~~ 101 (169)
T PF00535_consen 41 TEEILEEYAESDPNIRYIRNPENL-GFSAARNRGI----KHAKGEYILFLDDDDIISPDWLEELVE 101 (169)
T ss_dssp HHHHHHHHHCCSTTEEEEEHCCCS-HHHHHHHHHH----HH--SSEEEEEETTEEE-TTHHHHHHH
T ss_pred cccccccccccccccccccccccc-cccccccccc----cccceeEEEEeCCCceEcHHHHHHHHH
Confidence 333344444345666666666554 3333333333 344666999999999999875555444
No 24
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=57.30 E-value=73 Score=28.32 Aligned_cols=55 Identities=4% Similarity=-0.023 Sum_probs=35.7
Q ss_pred hcCCCeEEEeccCCCCChHHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHh
Q 024861 197 AQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGICFCNLS 253 (261)
Q Consensus 197 ~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~ 253 (261)
+.+..|..+...++. ....=.-.++++|.+ .+++|++..|||..+..+.|..++.
T Consensus 42 ~~~~~i~~i~~~~N~-G~a~a~N~Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~ 96 (281)
T TIGR01556 42 LRGQKIALIHLGDNQ-GIAGAQNQGLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWK 96 (281)
T ss_pred ccCCCeEEEECCCCc-chHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHH
Confidence 344566666544433 223333346677754 3789999999999999877776664
No 25
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=54.99 E-value=1.4e+02 Score=25.62 Aligned_cols=108 Identities=11% Similarity=-0.028 Sum_probs=54.7
Q ss_pred CCCeeEEEEEeCCCCCHHHHHHHHhhhcCCcchhhhhhcCCCEEEEEEeecCCCCCchhHHhhHHhhhcCCCeEEEeccC
Q 024861 130 RPKVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIE 209 (261)
Q Consensus 130 ~~~~~lvI~V~Sap~n~~rR~aIR~TW~~~~~~l~kLe~~~gi~vrFVIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~~D 209 (261)
.....+-|+|.+.-....-...++.-...... ...+.+.++. .+++ +. ....+.+-.++ .+......+
T Consensus 26 ~~~~~isVvip~~n~~~~l~~~l~si~~q~~~-------~~~~eiivvd-d~s~-d~-t~~~~~~~~~~--~v~~i~~~~ 93 (251)
T cd06439 26 AYLPTVTIIIPAYNEEAVIEAKLENLLALDYP-------RDRLEIIVVS-DGST-DG-TAEIAREYADK--GVKLLRFPE 93 (251)
T ss_pred CCCCEEEEEEecCCcHHHHHHHHHHHHhCcCC-------CCcEEEEEEE-CCCC-cc-HHHHHHHHhhC--cEEEEEcCC
Confidence 33445666666665544455556555543210 1124443443 3322 22 22222222222 244433332
Q ss_pred CCCChHHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhh
Q 024861 210 GYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGICFCNLSI 254 (261)
Q Consensus 210 sY~nLt~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~~ 254 (261)
.. .|. ..+..+.+....+|++.+|+|+.+..+.|..++..
T Consensus 94 ~~----g~~-~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~ 133 (251)
T cd06439 94 RR----GKA-AALNRALALATGEIVVFTDANALLDPDALRLLVRH 133 (251)
T ss_pred CC----ChH-HHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHH
Confidence 22 233 23445555556799999999999998777776654
No 26
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=54.38 E-value=28 Score=29.73 Aligned_cols=39 Identities=18% Similarity=0.054 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhh
Q 024861 216 AKTKIFFSTAVAKWDADFYVKVDDDVHVNLGICFCNLSI 254 (261)
Q Consensus 216 ~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~~ 254 (261)
.|+-.......+..++++++..|+|+.|+.+.|..++..
T Consensus 17 ~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~ 55 (175)
T PF13506_consen 17 PKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAP 55 (175)
T ss_pred hHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHH
Confidence 466554443322368999999999999999998887764
No 27
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=54.38 E-value=11 Score=33.85 Aligned_cols=29 Identities=38% Similarity=0.588 Sum_probs=22.5
Q ss_pred cchhHHHHHHHHHHHHHHHhc------CCCCCCCC
Q 024861 12 STKWIPFVCLFCFALGILFSN------LTWNPPES 40 (261)
Q Consensus 12 ~~~~~~~l~~~~~~~~~~~~~------r~w~~~~~ 40 (261)
+-...+++|-.||++|++|++ -||+.+..
T Consensus 6 ~~~t~lIl~~tsF~lGvlf~~~pyD~~~Lw~~~~t 40 (196)
T smart00786 6 SFGTALIIGSTSFFLGILFANFPYDYPLLWSPDPT 40 (196)
T ss_pred ccccchhhhhHHHHHHHHHhcCccccchhcCCCCC
Confidence 445679999999999999998 35766543
No 28
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=53.41 E-value=7.8 Score=34.67 Aligned_cols=29 Identities=38% Similarity=0.667 Sum_probs=22.8
Q ss_pred cchhHHHHHHHHHHHHHHHhc------CCCCCCCC
Q 024861 12 STKWIPFVCLFCFALGILFSN------LTWNPPES 40 (261)
Q Consensus 12 ~~~~~~~l~~~~~~~~~~~~~------r~w~~~~~ 40 (261)
|-+..+++|-.||++|++|++ -||+.+.+
T Consensus 6 ~~~t~lIi~stsF~LG~lf~~~~yD~~~Lw~~~~t 40 (196)
T PF08229_consen 6 SFGTGLIICSTSFLLGVLFSNWPYDYPTLWSSPPT 40 (196)
T ss_pred ceeeeeehHhhHHHHHHHHHcccchhHHhcCCCCC
Confidence 445678999999999999998 35776554
No 29
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=47.94 E-value=1.2e+02 Score=24.33 Aligned_cols=62 Identities=11% Similarity=-0.024 Sum_probs=40.0
Q ss_pred hHHhhHHhhhcCCCeEEEeccCCCCChHHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhh
Q 024861 188 LDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGICFCNLSI 254 (261)
Q Consensus 188 l~~~I~~E~~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~~ 254 (261)
....++.-..++..+..+...+... + -.++..+.+....+|++..|+|..+..+.|..++..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~n~G----~-~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~ 103 (185)
T cd04179 42 TAEIARELAARVPRVRVIRLSRNFG----K-GAAVRAGFKAARGDIVVTMDADLQHPPEDIPKLLEK 103 (185)
T ss_pred hHHHHHHHHHhCCCeEEEEccCCCC----c-cHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 3444555556666666665554442 1 133444455455699999999999998888877763
No 30
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=46.53 E-value=1.9e+02 Score=26.13 Aligned_cols=78 Identities=10% Similarity=-0.000 Sum_probs=47.5
Q ss_pred CCCEEEEEEeecCCCCCchhHHhhHHhhhcCCCeEEEec--cCCCCChHHHHHHHHHHHhhcCCccEEEEeCCceEEehH
Q 024861 169 EKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEH--IEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLG 246 (261)
Q Consensus 169 ~~gi~vrFVIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~--~DsY~nLt~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~ 246 (261)
...+.+++|=+.+. ......|.+-.+.++-+..+.. ...+.+.+. +..-+......+|++..|.|+.+..+
T Consensus 32 ~~~~eiIvvd~~s~---~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~----arN~g~~~A~~d~l~flD~D~i~~~~ 104 (281)
T PF10111_consen 32 DPDFEIIVVDDGSS---DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAK----ARNIGAKYARGDYLIFLDADCIPSPD 104 (281)
T ss_pred CCCEEEEEEECCCc---hhHHHHHHHHHhccCceEEEEcCCCCCCcCHHH----HHHHHHHHcCCCEEEEEcCCeeeCHH
Confidence 34565655544443 3444566777777776623222 221223222 23344445589999999999999999
Q ss_pred HHHHHHh
Q 024861 247 ICFCNLS 253 (261)
Q Consensus 247 ~L~~~L~ 253 (261)
.+...+.
T Consensus 105 ~i~~~~~ 111 (281)
T PF10111_consen 105 FIEKLLN 111 (281)
T ss_pred HHHHHHH
Confidence 9988887
No 31
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=46.50 E-value=1.9e+02 Score=24.88 Aligned_cols=34 Identities=12% Similarity=-0.031 Sum_probs=27.6
Q ss_pred HHHHHhhcCCccEEEEeCCceEEehHHHHHHHhh
Q 024861 221 FFSTAVAKWDADFYVKVDDDVHVNLGICFCNLSI 254 (261)
Q Consensus 221 ~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~~ 254 (261)
++.++.+....+|++..|+|..+.++.|...+..
T Consensus 75 a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~ 108 (241)
T cd06427 75 ACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAA 108 (241)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHH
Confidence 4555666667899999999999999998887764
No 32
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=42.86 E-value=2e+02 Score=24.02 Aligned_cols=33 Identities=21% Similarity=0.183 Sum_probs=26.0
Q ss_pred HHHHhhcCCccEEEEeCCceEEehHHHHHHHhh
Q 024861 222 FSTAVAKWDADFYVKVDDDVHVNLGICFCNLSI 254 (261)
Q Consensus 222 f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~~ 254 (261)
+..+.+..+.+|++.+|+|.++.++.|..++..
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~ 108 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGY 108 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHH
Confidence 445555558999999999999998887777663
No 33
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=42.86 E-value=1.4e+02 Score=25.11 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=34.4
Q ss_pred CCCeEEEeccCCCCChHHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHH
Q 024861 199 HKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGICFCNL 252 (261)
Q Consensus 199 ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L 252 (261)
...+..+...++. ....-.-.+++++... +++|++..|||+.+.++.|..++
T Consensus 46 ~~~i~~i~~~~n~-G~~~a~N~g~~~a~~~-~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 46 SEKIELIHLGENL-GIAKALNIGIKAALEN-GADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred CCcEEEEECCCce-ehHHhhhHHHHHHHhC-CCCEEEEECCCCCcCHhHHHHHH
Confidence 4455555544332 2333344466665443 78999999999999999888875
No 34
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=42.03 E-value=1.9e+02 Score=23.43 Aligned_cols=76 Identities=11% Similarity=0.045 Sum_probs=43.8
Q ss_pred CEEEEEEeecCCCCCchhHHhhHHhhhcCCCeEEEeccCCCCChHHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHH
Q 024861 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGICFC 250 (261)
Q Consensus 171 gi~vrFVIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~~L~~ 250 (261)
.+.+..|-+.+. ++ ....+....+++..+..+.+...+. +. .++..+......+|++.+|+|.....+.|..
T Consensus 29 ~~eiivvdd~s~--d~-t~~~~~~~~~~~~~i~~i~~~~n~G----~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~ 100 (181)
T cd04187 29 DYEIIFVDDGST--DR-TLEILRELAARDPRVKVIRLSRNFG----QQ-AALLAGLDHARGDAVITMDADLQDPPELIPE 100 (181)
T ss_pred CeEEEEEeCCCC--cc-HHHHHHHHHhhCCCEEEEEecCCCC----cH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHHH
Confidence 345544444432 22 2233444455566666666544332 21 3334444445679999999999998877777
Q ss_pred HHhh
Q 024861 251 NLSI 254 (261)
Q Consensus 251 ~L~~ 254 (261)
+++.
T Consensus 101 l~~~ 104 (181)
T cd04187 101 MLAK 104 (181)
T ss_pred HHHH
Confidence 6654
No 35
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=41.73 E-value=1.3e+02 Score=28.46 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=17.3
Q ss_pred CccEEEEeCCceEEehHHHHHH
Q 024861 230 DADFYVKVDDDVHVNLGICFCN 251 (261)
Q Consensus 230 ~adF~lKvDDDvfVnl~~L~~~ 251 (261)
.++||+-..|||..-..-+..+
T Consensus 169 ~~~YyL~LEDDVia~~~f~~~i 190 (297)
T PF04666_consen 169 LGDYYLQLEDDVIAAPGFLSRI 190 (297)
T ss_pred cCCeEEEecCCeEechhHHHHH
Confidence 6889999999999887644443
No 36
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=40.68 E-value=2e+02 Score=23.44 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=25.7
Q ss_pred HHHHhhcCCccEEEEeCCceEEehHHHHHHHhh
Q 024861 222 FSTAVAKWDADFYVKVDDDVHVNLGICFCNLSI 254 (261)
Q Consensus 222 f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~~ 254 (261)
+.++.+....+|++..|+|..+..+.|...++.
T Consensus 75 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~ 107 (202)
T cd04184 75 TNSALELATGEFVALLDHDDELAPHALYEVVKA 107 (202)
T ss_pred HHHHHHhhcCCEEEEECCCCcCChHHHHHHHHH
Confidence 444445557899999999999998877777764
No 37
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=40.22 E-value=2.2e+02 Score=23.68 Aligned_cols=78 Identities=15% Similarity=0.023 Sum_probs=44.3
Q ss_pred EEEEEEeecCCCCCchhHHhhHHhhhcCC--CeEEEeccCCCCChHHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHH
Q 024861 172 IIIRFMIGHSATSNSILDKAIDSEDAQHK--DFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGICF 249 (261)
Q Consensus 172 i~vrFVIG~s~~~~~~l~~~I~~E~~~yg--DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~~L~ 249 (261)
+.+++|...+. +. ....+.+-.+.|. ++......... ....|.- .+..+.+....+|++..|+|+.+..+.|.
T Consensus 31 ~eiivVdd~s~--d~-t~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~-~~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 105 (196)
T cd02520 31 YEILFCVQDED--DP-AIPVVRKLIAKYPNVDARLLIGGEKV-GINPKVN-NLIKGYEEARYDILVISDSDISVPPDYLR 105 (196)
T ss_pred eEEEEEeCCCc--ch-HHHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHH-HHHHHHHhCCCCEEEEECCCceEChhHHH
Confidence 66666665553 22 2233444444554 33333222111 1223433 24455566789999999999999988887
Q ss_pred HHHhh
Q 024861 250 CNLSI 254 (261)
Q Consensus 250 ~~L~~ 254 (261)
.++..
T Consensus 106 ~l~~~ 110 (196)
T cd02520 106 RMVAP 110 (196)
T ss_pred HHHHH
Confidence 77764
No 38
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=39.96 E-value=30 Score=25.45 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhc
Q 024861 16 IPFVCLFCFALGILFSN 32 (261)
Q Consensus 16 ~~~l~~~~~~~~~~~~~ 32 (261)
++++|++|+.+|.+++-
T Consensus 42 ~~~~c~~S~~lG~~~~~ 58 (60)
T PF06072_consen 42 VVALCVLSGGLGALVAW 58 (60)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 35889999999998763
No 39
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=39.82 E-value=35 Score=25.02 Aligned_cols=28 Identities=11% Similarity=0.326 Sum_probs=19.2
Q ss_pred CCccCCCcccccchhHHHHHHHHHHHHHHHh
Q 024861 1 MKYRTSTTTIISTKWIPFVCLFCFALGILFS 31 (261)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 31 (261)
||.|..++ -+||||++.+..|+.=++++
T Consensus 1 ~r~k~~~~---mtriVLLISfiIlfgRl~Y~ 28 (59)
T PF11119_consen 1 MRRKKNSR---MTRIVLLISFIILFGRLIYS 28 (59)
T ss_pred CCCcccch---HHHHHHHHHHHHHHHHHHHH
Confidence 55565555 36899999888887645544
No 40
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=39.49 E-value=2.3e+02 Score=23.87 Aligned_cols=34 Identities=21% Similarity=0.192 Sum_probs=26.6
Q ss_pred HHHHHhhcC--CccEEEEeCCceEEehHHHHHHHhh
Q 024861 221 FFSTAVAKW--DADFYVKVDDDVHVNLGICFCNLSI 254 (261)
Q Consensus 221 ~f~wa~~~~--~adF~lKvDDDvfVnl~~L~~~L~~ 254 (261)
++.++.+.. +.+|++..|+|+.+.++.|..++..
T Consensus 73 a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~ 108 (236)
T cd06435 73 ALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPI 108 (236)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHH
Confidence 456665543 4799999999999999988887754
No 41
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=38.49 E-value=3.8e+02 Score=26.00 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=57.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHhhhcCCcchhhhhhcCCCEEEEEEeecCCCCCchhHHhhHHhhhcCCCeEEEeccCCCC
Q 024861 133 VFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYH 212 (261)
Q Consensus 133 ~~lvI~V~Sap~n~~rR~aIR~TW~~~~~~l~kLe~~~gi~vrFVIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~~DsY~ 212 (261)
+.+-|+|.+.-....-++.|+.- ..+. -....+.+|-..+ + +.....+++..+++..+......+
T Consensus 75 p~vsViIP~yNE~~~i~~~l~sl-l~q~--------yp~~eIivVdDgs-~--D~t~~~~~~~~~~~~~v~vv~~~~--- 139 (444)
T PRK14583 75 PLVSILVPCFNEGLNARETIHAA-LAQT--------YTNIEVIAINDGS-S--DDTAQVLDALLAEDPRLRVIHLAH--- 139 (444)
T ss_pred CcEEEEEEeCCCHHHHHHHHHHH-HcCC--------CCCeEEEEEECCC-C--ccHHHHHHHHHHhCCCEEEEEeCC---
Confidence 45666666665544344444321 2221 1235553343333 2 223344555555666554444322
Q ss_pred ChHHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHh
Q 024861 213 ELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGICFCNLS 253 (261)
Q Consensus 213 nLt~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~ 253 (261)
|. .|. .+++.+....+.+|++..|.|..+..+.|...++
T Consensus 140 n~-Gka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~ 178 (444)
T PRK14583 140 NQ-GKA-IALRMGAAAARSEYLVCIDGDALLDKNAVPYLVA 178 (444)
T ss_pred CC-CHH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHH
Confidence 22 243 3566666667899999999999999998877665
No 42
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=36.82 E-value=50 Score=29.31 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=20.1
Q ss_pred HHHHHHhhcCCccEEEEeCCceEEehHH
Q 024861 220 IFFSTAVAKWDADFYVKVDDDVHVNLGI 247 (261)
Q Consensus 220 ~~f~wa~~~~~adF~lKvDDDvfVnl~~ 247 (261)
.++..+.+..+++|++.+.||+++.-..
T Consensus 44 ~~yN~a~~~a~~~ylvflHqDv~i~~~~ 71 (217)
T PF13712_consen 44 AAYNEAMEKAKAKYLVFLHQDVFIINEN 71 (217)
T ss_dssp THHHHHGGG--SSEEEEEETTEE-SSHH
T ss_pred HHHHHHHHhCCCCEEEEEeCCeEEcchh
Confidence 3567777778999999999999997444
No 43
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=33.69 E-value=1.5e+02 Score=29.70 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=23.4
Q ss_pred HHHHHhh----cCCccEEEEeCCceEEehHHHHHHHhhcc
Q 024861 221 FFSTAVA----KWDADFYVKVDDDVHVNLGICFCNLSILL 256 (261)
Q Consensus 221 ~f~wa~~----~~~adF~lKvDDDvfVnl~~L~~~L~~~p 256 (261)
=++||.. ...++.++-+.||.-|-+|=+.-+...+|
T Consensus 178 HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ 217 (434)
T PF03071_consen 178 HYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLP 217 (434)
T ss_dssp HHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHH
Confidence 3445544 34789999999999999887766555544
No 44
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=32.47 E-value=63 Score=25.97 Aligned_cols=32 Identities=13% Similarity=0.090 Sum_probs=25.4
Q ss_pred HHHHHhhcCCccEEEEeCCceEEehHHHHHHH
Q 024861 221 FFSTAVAKWDADFYVKVDDDVHVNLGICFCNL 252 (261)
Q Consensus 221 ~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L 252 (261)
.+..+.+..+.+|++..|+|..+..+.+...+
T Consensus 66 a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~ 97 (202)
T cd06433 66 AMNKGIALATGDIIGFLNSDDTLLPGALLAVV 97 (202)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCchHHHHHH
Confidence 34555555688999999999999988888876
No 45
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=31.47 E-value=66 Score=25.89 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=26.6
Q ss_pred HHHHHhhcCCccEEEEeCCceEEehHHHHHHHhhc
Q 024861 221 FFSTAVAKWDADFYVKVDDDVHVNLGICFCNLSIL 255 (261)
Q Consensus 221 ~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~~~ 255 (261)
.+..+.+....+|++..|+|..+..+-|...++..
T Consensus 70 ~~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 70 IRNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 34455555688999999999999888777776543
No 46
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=31.23 E-value=2.9e+02 Score=22.50 Aligned_cols=62 Identities=8% Similarity=0.012 Sum_probs=37.8
Q ss_pred hhHHhhHHhhhcCCCeEEEeccCCCCChHHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhh
Q 024861 187 ILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGICFCNLSI 254 (261)
Q Consensus 187 ~l~~~I~~E~~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~~ 254 (261)
.....+.+-.+++. +..+...++. .+. .++..+....+.+|++..|+|.++..+.|...+..
T Consensus 43 ~t~~~~~~~~~~~~-i~~i~~~~n~----G~~-~a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~ 104 (201)
T cd04195 43 SLNEVLEEFKRKLP-LKVVPLEKNR----GLG-KALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDF 104 (201)
T ss_pred hHHHHHHHHHhcCC-eEEEEcCccc----cHH-HHHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHH
Confidence 34434444445555 5555444332 111 13455555568999999999999998877776653
No 47
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=31.11 E-value=35 Score=26.09 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=19.6
Q ss_pred chhHHHHHHHHHHHHHHHhcCC
Q 024861 13 TKWIPFVCLFCFALGILFSNLT 34 (261)
Q Consensus 13 ~~~~~~l~~~~~~~~~~~~~r~ 34 (261)
.-|++++-++|..+|.+++++|
T Consensus 46 ~~~ii~iD~~Sl~aGf~~a~~m 67 (74)
T PF09964_consen 46 TWWIIFIDAVSLTAGFLYAKKM 67 (74)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999986
No 48
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=29.86 E-value=5.3e+02 Score=25.05 Aligned_cols=33 Identities=9% Similarity=0.130 Sum_probs=27.3
Q ss_pred HHHHHhhcCCccEEEEeCCceEEehHHHHHHHh
Q 024861 221 FFSTAVAKWDADFYVKVDDDVHVNLGICFCNLS 253 (261)
Q Consensus 221 ~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~ 253 (261)
++.++.+..+.+|++..|+|..+..+.|...+.
T Consensus 122 AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~ 154 (439)
T TIGR03111 122 ALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVT 154 (439)
T ss_pred HHHHHHHHccCCEEEEECCCCCcChHHHHHHHH
Confidence 456666667899999999999999988877765
No 49
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=28.71 E-value=86 Score=30.14 Aligned_cols=36 Identities=14% Similarity=0.321 Sum_probs=26.6
Q ss_pred CCChHHHHHHHHHHHhhcCCccEEEEeCCceEEehH
Q 024861 211 YHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLG 246 (261)
Q Consensus 211 Y~nLt~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~ 246 (261)
|..+..=.+.++.|+.+..++++++-+|||..+.++
T Consensus 78 y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPd 113 (334)
T cd02514 78 YYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPD 113 (334)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHh
Confidence 333333334477777765689999999999999998
No 50
>PF03742 PetN: PetN ; InterPro: IPR005497 PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability. It is found in bacteria and plants. Cytochrome b6-f complex is composed of 4 large subunits: cytochrome b6, subunit IV (17 kDa polypeptide, petD), cytochrome f and the Rieske protein, as well as 4 small subunits: petG, petL, petM and petN. The complex functions as a dimer. The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) [].; GO: 0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, 0017004 cytochrome complex assembly, 0009512 cytochrome b6f complex; PDB: 2ZT9_H 2D2C_H 2E76_H 1VF5_U 2E75_H 2E74_H.
Probab=28.31 E-value=64 Score=20.45 Aligned_cols=23 Identities=22% Similarity=0.590 Sum_probs=20.1
Q ss_pred ccchhHHHHHHHHHHHHHHHhcC
Q 024861 11 ISTKWIPFVCLFCFALGILFSNL 33 (261)
Q Consensus 11 ~~~~~~~~l~~~~~~~~~~~~~r 33 (261)
++--|+.++.+|+|-+.+.+=||
T Consensus 4 v~lgWaal~~~ftfSlalVVWGR 26 (29)
T PF03742_consen 4 VSLGWAALMVVFTFSLALVVWGR 26 (29)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHhccceeEEEec
Confidence 45679999999999999998887
No 51
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=27.46 E-value=4.5e+02 Score=23.52 Aligned_cols=32 Identities=22% Similarity=0.129 Sum_probs=23.8
Q ss_pred HHHHhhcCCccEEEEeCCceEEehHHHHHHHh
Q 024861 222 FSTAVAKWDADFYVKVDDDVHVNLGICFCNLS 253 (261)
Q Consensus 222 f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~ 253 (261)
...+.+....+|++..|+|+.+..+-|..++.
T Consensus 75 ~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~ 106 (299)
T cd02510 75 RIAGARAATGDVLVFLDSHCEVNVGWLEPLLA 106 (299)
T ss_pred HHHHHHHccCCEEEEEeCCcccCccHHHHHHH
Confidence 33444445789999999999998877666654
No 52
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=26.91 E-value=56 Score=22.77 Aligned_cols=16 Identities=13% Similarity=0.650 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 024861 16 IPFVCLFCFALGILFS 31 (261)
Q Consensus 16 ~~~l~~~~~~~~~~~~ 31 (261)
+++|++++|++|+.+-
T Consensus 4 V~lL~~~~l~iGlmIG 19 (47)
T PF11772_consen 4 VLLLAILALAIGLMIG 19 (47)
T ss_pred HHHHHHHHHHHHHHee
Confidence 6889999999999864
No 53
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=24.47 E-value=4.6e+02 Score=22.60 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=25.8
Q ss_pred HHHHHhhcCCccEEEEeCCceEEehHHHHHHHhh
Q 024861 221 FFSTAVAKWDADFYVKVDDDVHVNLGICFCNLSI 254 (261)
Q Consensus 221 ~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~~ 254 (261)
++..+....+.+|++..|+|..++++.|..++..
T Consensus 84 a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~ 117 (243)
T PLN02726 84 AYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKK 117 (243)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHH
Confidence 3444444457899999999999999888777653
No 54
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=24.44 E-value=44 Score=27.27 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHhc
Q 024861 19 VCLFCFALGILFSN 32 (261)
Q Consensus 19 l~~~~~~~~~~~~~ 32 (261)
++++-|++++++.+
T Consensus 10 ~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 10 VAILLFLFLFYCHN 23 (130)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444333
No 55
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=23.64 E-value=4.3e+02 Score=21.95 Aligned_cols=76 Identities=8% Similarity=-0.103 Sum_probs=42.9
Q ss_pred CEEEEEEeecCCCCCchhHHhhHHhhhcCCCe-EEEeccCCCCChHHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHH
Q 024861 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKDF-LRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGICF 249 (261)
Q Consensus 171 gi~vrFVIG~s~~~~~~l~~~I~~E~~~ygDI-L~ld~~DsY~nLt~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~~L~ 249 (261)
.+.+..|-+.|. +.....+++..++++.. ..+...... ... .++..+.+....+|++.+|+|....++.+.
T Consensus 30 ~~eiivvdd~S~---D~t~~~~~~~~~~~~~~i~~i~~~~n~-G~~----~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~ 101 (211)
T cd04188 30 SYEIIVVDDGSK---DGTAEVARKLARKNPALIRVLTLPKNR-GKG----GAVRAGMLAARGDYILFADADLATPFEELE 101 (211)
T ss_pred CEEEEEEeCCCC---CchHHHHHHHHHhCCCcEEEEEcccCC-CcH----HHHHHHHHHhcCCEEEEEeCCCCCCHHHHH
Confidence 355655544443 22333445555566654 333333222 112 233334444467999999999999988888
Q ss_pred HHHhh
Q 024861 250 CNLSI 254 (261)
Q Consensus 250 ~~L~~ 254 (261)
.++..
T Consensus 102 ~l~~~ 106 (211)
T cd04188 102 KLEEA 106 (211)
T ss_pred HHHHH
Confidence 87764
No 56
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=22.69 E-value=5.7e+02 Score=23.03 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=22.2
Q ss_pred CCccEEEEeCCceEEehHHHHHHHh
Q 024861 229 WDADFYVKVDDDVHVNLGICFCNLS 253 (261)
Q Consensus 229 ~~adF~lKvDDDvfVnl~~L~~~L~ 253 (261)
.+.+|++-.|-|..+.++.|..++.
T Consensus 94 ~~~~~i~~~DaD~~~~p~~l~~~v~ 118 (254)
T cd04191 94 SRYDYMVVLDADSLMSGDTIVRLVR 118 (254)
T ss_pred CCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 4789999999999999998888775
No 57
>PRK10018 putative glycosyl transferase; Provisional
Probab=21.69 E-value=6.3e+02 Score=23.14 Aligned_cols=33 Identities=15% Similarity=0.083 Sum_probs=25.6
Q ss_pred HHHHhhcCCccEEEEeCCceEEehHHHHHHHhh
Q 024861 222 FSTAVAKWDADFYVKVDDDVHVNLGICFCNLSI 254 (261)
Q Consensus 222 f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~~ 254 (261)
...+.+....+|++..|+|.++.++.|..++..
T Consensus 77 ~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~ 109 (279)
T PRK10018 77 RNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAH 109 (279)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCccHHHHHHHH
Confidence 344455568999999999999999888776653
No 58
>PF04846 Herpes_pp38: Herpesvirus pp38 phosphoprotein; InterPro: IPR006930 Members of this family contain a conserved region found in most herpesvirus pp38 phosphoproteins.
Probab=21.21 E-value=74 Score=23.62 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=17.1
Q ss_pred ccchhHHHHHHHHHHHHHHHhcC
Q 024861 11 ISTKWIPFVCLFCFALGILFSNL 33 (261)
Q Consensus 11 ~~~~~~~~l~~~~~~~~~~~~~r 33 (261)
+|.|..++=.-.+|++|+|+ ||
T Consensus 15 ~S~k~lv~Gscm~f~aG~Li-G~ 36 (63)
T PF04846_consen 15 FSAKSLVLGSCMSFFAGTLI-GR 36 (63)
T ss_pred eecchhhHHHHHHHHHHHhc-cc
Confidence 47777777777899999995 44
No 59
>PRK10984 DNA-binding transcriptional regulator Crl; Provisional
Probab=20.76 E-value=61 Score=27.24 Aligned_cols=37 Identities=19% Similarity=0.406 Sum_probs=29.5
Q ss_pred cCChhHHHHHHHhhhcccccCCcccchhhhhhHHHHHHHHhhhc
Q 024861 66 AFQDQDVAKEVLKTRGAIHDGSVESDRTLDKTIGQLQMELAASR 109 (261)
Q Consensus 66 ~~~~~~~~~~v~~t~~~i~~~~~~~~~~~~k~~~~lemela~~~ 109 (261)
+-..+++..+|.+|+.... ..|.+.++++|+.|.-+-
T Consensus 86 ~i~~~~~~e~v~~Tl~~Fh-------~kL~~~L~~~~l~L~p~~ 122 (127)
T PRK10984 86 PIKDKEVVERLEHTLREFH-------EKLRELLATLELKLEPAD 122 (127)
T ss_pred cCCcHHHHHHHHHHHHHHH-------HHHHHHHHHcccccccch
Confidence 3345677888999999888 589999999998887653
No 60
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=20.62 E-value=1.1e+02 Score=25.49 Aligned_cols=26 Identities=19% Similarity=0.009 Sum_probs=20.6
Q ss_pred CCccEEEEeCCceEEehHHHHHHHhh
Q 024861 229 WDADFYVKVDDDVHVNLGICFCNLSI 254 (261)
Q Consensus 229 ~~adF~lKvDDDvfVnl~~L~~~L~~ 254 (261)
...+|++.+|+|..+.++.|..++..
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~ 102 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEA 102 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999998888877777663
No 61
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=20.09 E-value=7.2e+02 Score=23.20 Aligned_cols=107 Identities=10% Similarity=-0.056 Sum_probs=63.6
Q ss_pred eeEEEEEeCCCCCH-HHHHHHHhhhcCCcchhhhhhcCCCEEEEEEeecCCCCCchhHHhhHHhhhcCCCeEEEeccCCC
Q 024861 133 VFVVIGINTAFSSR-KRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGY 211 (261)
Q Consensus 133 ~~lvI~V~Sap~n~-~rR~aIR~TW~~~~~~l~kLe~~~gi~vrFVIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~~DsY 211 (261)
+.+-|.|.+.-... --.+.++..-... -....+..|...+ .+..-+.+.+-.+++++.+...+. -
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~d---------yp~~evivv~d~~---~d~~~~~~~~~~~~~~~~~~~~~~--~ 119 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQD---------YPRYEVIVVDDGS---TDETYEILEELGAEYGPNFRVIYP--E 119 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCC---------CCCceEEEECCCC---ChhHHHHHHHHHhhcCcceEEEec--c
Confidence 56666677766655 3444444333322 1224555555433 234455566666677645555422 0
Q ss_pred CChHHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhh
Q 024861 212 HELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGICFCNLSI 254 (261)
Q Consensus 212 ~nLt~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~~ 254 (261)
.+...| ...+.++....+.++++..|-|..+..+.|.+.+..
T Consensus 120 ~~~~gK-~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~ 161 (439)
T COG1215 120 KKNGGK-AGALNNGLKRAKGDVVVILDADTVPEPDALRELVSP 161 (439)
T ss_pred ccCccc-hHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhh
Confidence 122223 345677777667999999999999999999888764
Done!