Query 024861
Match_columns 261
No_of_seqs 259 out of 1109
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 15:41:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024861.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024861hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0a_A Beta-1,3-N-acetylglucos 99.3 1.7E-11 5.8E-16 111.3 9.9 106 131-256 11-119 (280)
2 3bcv_A Putative glycosyltransf 77.6 27 0.00091 28.3 12.1 75 171-254 34-108 (240)
3 1xhb_A Polypeptide N-acetylgal 71.3 60 0.0021 29.7 12.8 62 188-254 76-138 (472)
4 1qg8_A Protein (spore coat pol 66.7 51 0.0017 26.8 13.1 34 220-253 78-111 (255)
5 4fix_A UDP-galactofuranosyl tr 58.5 60 0.0021 32.1 10.6 35 219-253 257-291 (657)
6 2d7i_A Polypeptide N-acetylgal 57.9 87 0.003 30.0 11.4 63 186-253 157-219 (570)
7 2z86_A Chondroitin synthase; G 46.3 2E+02 0.0067 27.2 12.9 103 133-253 375-477 (625)
8 2ffu_A Ppgalnact-2, polypeptid 45.8 1.6E+02 0.0055 27.2 10.9 53 197-254 118-170 (501)
9 2pnv_A Small conductance calci 33.3 36 0.0012 22.4 2.9 30 70-110 8-37 (43)
10 2z86_A Chondroitin synthase; G 27.9 3.9E+02 0.013 25.2 13.1 32 222-253 166-197 (625)
11 1vf5_H Protein PET N; photosyn 26.2 40 0.0014 20.4 2.0 23 11-33 4-26 (29)
12 4dzn_A Coiled-coil peptide CC- 25.0 27 0.00094 21.3 1.1 18 93-110 13-30 (33)
13 1q90_N Cytochrome B6F complex 22.8 41 0.0014 20.7 1.6 23 11-33 6-28 (31)
14 2lnd_A De novo designed protei 22.3 1.3E+02 0.0043 22.8 4.6 72 139-227 31-104 (112)
15 3ra3_B P2F; coiled coil domain 21.5 46 0.0016 19.6 1.6 16 93-108 11-26 (28)
16 1fo8_A Alpha-1,3-mannosyl-glyc 20.2 63 0.0022 29.5 3.1 32 220-251 89-120 (343)
No 1
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=99.25 E-value=1.7e-11 Score=111.28 Aligned_cols=106 Identities=21% Similarity=0.245 Sum_probs=74.5
Q ss_pred CCeeEEEEEeCCCCC-HHHHHHHHhhhcCCcchhhhhhcCCCEEEEEEeecCCCCCchhHHhhHHhhhcCCCeEEEecc-
Q 024861 131 PKVFVVIGINTAFSS-RKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHI- 208 (261)
Q Consensus 131 ~~~~lvI~V~Sap~n-~~rR~aIR~TW~~~~~~l~kLe~~~gi~vrFVIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~~- 208 (261)
..-.|+|+|+|++.+ ..|+.+||+||++... .. .||.+... +..+ ... ..++++..++.
T Consensus 11 ~~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~--------~~---~fifsd~~--d~~l----~~~--~~~~~~~~~~~~ 71 (280)
T 2j0a_A 11 QLGDIFIAVKTTWAFHRSRLDLLLDTWVSRIR--------QQ---TFIFTDSP--DERL----QER--LGPHLVVTQCSA 71 (280)
T ss_dssp CGGGEEEEEECCGGGTTTTHHHHHHTGGGGSG--------GG---EEEEESSC--CHHH----HHH--HGGGEEECCC--
T ss_pred CcccEEEEEECcHHHHHHHHHHHHHHHhccCC--------Cc---eEEEcCCC--cccc----ccc--ccccceeccccc
Confidence 345788999999985 5688999999998642 11 24444332 2222 221 24568877763
Q ss_pred -CCCCChHHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhhcc
Q 024861 209 -EGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGICFCNLSILL 256 (261)
Q Consensus 209 -DsY~nLt~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~~~p 256 (261)
+++.+++.|+...|.+.. ..+++|++|+|||+|||+++|..+|..+.
T Consensus 72 ~~~~~~l~~K~~~~~~~~l-~~~~~Wf~~~DDDtyv~~~nL~~~L~~~d 119 (280)
T 2j0a_A 72 EHSHPALSCKMAAEFDAFL-VSGLRWFCHVDDDNYVNPKALLQLLKTFP 119 (280)
T ss_dssp -----CCCHHHHHHHHHHH-HHTCSEEEEEETTEEECHHHHHHHHTTSC
T ss_pred cccccchHHHHHHHHHHHh-CCCCcEEEEeCCCcEEcHHHHHHHHHhCC
Confidence 467889999999888754 25999999999999999999999998753
No 2
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=77.61 E-value=27 Score=28.26 Aligned_cols=75 Identities=15% Similarity=0.130 Sum_probs=44.1
Q ss_pred CEEEEEEeecCCCCCchhHHhhHHhhhcCCCeEEEeccCCCCChHHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHH
Q 024861 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGICFC 250 (261)
Q Consensus 171 gi~vrFVIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~~L~~ 250 (261)
.+.++.|-..|. + .....+++-.+++..|..+. .++. ... .+...+.+....+|++.+|+|.++.++.|..
T Consensus 34 ~~eiIvvDd~S~--d-~t~~~~~~~~~~~~~i~~i~-~~n~-G~~----~a~N~g~~~a~g~~i~~lD~Dd~~~~~~l~~ 104 (240)
T 3bcv_A 34 DIEIILIDDESP--D-NCPKICDDYAAQYPNIKVIH-KKNA-GLG----MACNSGLDVATGEYVAFCDSDDYVDSDMYMT 104 (240)
T ss_dssp SEEEEEEECCCS--S-SHHHHHHHHHHHCSSEEEEE-CCCC-CHH----HHHHHHHHHCCSSEEEECCTTCCCCTTHHHH
T ss_pred CeEEEEEECCCC--c-CHHHHHHHHHhhCCCEEEEE-CCCC-ChH----HHHHHHHHHcCCCEEEEECCCCcCCHHHHHH
Confidence 355544443332 2 22334444455566676664 2322 222 2344555556889999999999999888777
Q ss_pred HHhh
Q 024861 251 NLSI 254 (261)
Q Consensus 251 ~L~~ 254 (261)
++..
T Consensus 105 l~~~ 108 (240)
T 3bcv_A 105 MYNV 108 (240)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 3
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=71.27 E-value=60 Score=29.71 Aligned_cols=62 Identities=13% Similarity=-0.027 Sum_probs=39.3
Q ss_pred hHHhhHHhhhcCC-CeEEEeccCCCCChHHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhh
Q 024861 188 LDKAIDSEDAQHK-DFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGICFCNLSI 254 (261)
Q Consensus 188 l~~~I~~E~~~yg-DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~~ 254 (261)
....+++-.+.+. .+..+...+.. .+. .+...+.+....+|++..|+|+.++.+.|..++..
T Consensus 76 t~~~l~~~~~~~~~~v~vi~~~~n~-G~~----~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ll~~ 138 (472)
T 1xhb_A 76 LKRPLESYVKKLKVPVHVIRMEQRS-GLI----RARLKGAAVSRGQVITFLDAHCECTAGWLEPLLAR 138 (472)
T ss_dssp GTHHHHHHHHSSSSCEEEEECSSCC-CHH----HHHHHHHHHCCSSEEEEEESSEEECTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCC-ChH----HHHHHHHHhccCCeEEEECCCeEeCccHHHHHHHH
Confidence 4444555556666 56666654443 222 23344445557999999999999998877666553
No 4
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=66.69 E-value=51 Score=26.84 Aligned_cols=34 Identities=9% Similarity=0.062 Sum_probs=26.4
Q ss_pred HHHHHHhhcCCccEEEEeCCceEEehHHHHHHHh
Q 024861 220 IFFSTAVAKWDADFYVKVDDDVHVNLGICFCNLS 253 (261)
Q Consensus 220 ~~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~ 253 (261)
..+..+.+..+.+|++..|||.++.++.|...+.
T Consensus 78 ~a~N~gi~~a~g~~i~~lD~Dd~~~~~~l~~~~~ 111 (255)
T 1qg8_A 78 ALINQAIEMAEGEYITYATDDNIYMPDRLLKMVR 111 (255)
T ss_dssp HHHHHHHHHCCCSEEEEEETTEEECTTHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCCccChHHHHHHHH
Confidence 3455666666899999999999999887766554
No 5
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=58.47 E-value=60 Score=32.11 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=27.7
Q ss_pred HHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHh
Q 024861 219 KIFFSTAVAKWDADFYVKVDDDVHVNLGICFCNLS 253 (261)
Q Consensus 219 l~~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~ 253 (261)
-.+++.|....+++|++..|||+.+..+.|..++.
T Consensus 257 N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~ 291 (657)
T 4fix_A 257 SRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLA 291 (657)
T ss_dssp HHHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEECCCCccChhHHHHHHH
Confidence 34667776655889999999999999887777654
No 6
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=57.89 E-value=87 Score=29.97 Aligned_cols=63 Identities=14% Similarity=0.017 Sum_probs=38.8
Q ss_pred chhHHhhHHhhhcCCCeEEEeccCCCCChHHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHh
Q 024861 186 SILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGICFCNLS 253 (261)
Q Consensus 186 ~~l~~~I~~E~~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~ 253 (261)
+.+...+++-.+.+..|-.+...+.. .+..-. ..+.+....+|++..|+|+.++.+-|..++.
T Consensus 157 ~tl~~~l~~~~~~~~~v~vi~~~~n~-G~~~A~----N~G~~~A~gd~i~fLD~D~~~~p~~L~~ll~ 219 (570)
T 2d7i_A 157 EHLKKPLEDYMALFPSVRILRTKKRE-GLIRTR----MLGASVATGDVITFLDSHCEANVNWLPPLLD 219 (570)
T ss_dssp GGGTHHHHHHHTTSTTEEEEECSSCC-CHHHHH----HHHHHHCCSSEEEECCSSEEECTTCSHHHHH
T ss_pred HHHHHHHHHHHHhCCeEEEEECCCCC-CHHHHH----HHHHHhcCCCEEEEEcCCccccccHHHHHHH
Confidence 33344555555667667666654432 333333 3333444789999999999998876655554
No 7
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=46.33 E-value=2e+02 Score=27.25 Aligned_cols=103 Identities=14% Similarity=0.024 Sum_probs=54.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHhhhcCCcchhhhhhcCCCEEEEEEeecCCCCCchhHHhhHHhhhcCCCeEEEeccCCCC
Q 024861 133 VFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYH 212 (261)
Q Consensus 133 ~~lvI~V~Sap~n~~rR~aIR~TW~~~~~~l~kLe~~~gi~vrFVIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~~DsY~ 212 (261)
..+-|+|.|.-....-++.|..--... ...+.+..|-..|. ++ ....+.+-.+.+..+..+. .++.
T Consensus 375 ~~vsiii~~yn~~~~l~~~l~s~~~q~---------~~~~eiivvdd~S~--d~-t~~~~~~~~~~~~~i~~~~-~~n~- 440 (625)
T 2z86_A 375 PLVSIYIPAYNCSKYIVRCVESALNQT---------ITDLEVCICDDGST--DD-TLRILQEHYANHPRVRFIS-QKNK- 440 (625)
T ss_dssp CSEEEEEEESSCTTTHHHHHHHHHSSS---------CCSEEEEEEEESCS--SS-HHHHHHHHHTTCTTEEEEE-ECCC-
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHhCc---------CCCeEEEEEECcCC--hh-HHHHHHHHHhhCCcEEEEe-CCCC-
Confidence 445555655543333444443322221 12355544444332 22 2333444345566666664 2221
Q ss_pred ChHHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHh
Q 024861 213 ELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGICFCNLS 253 (261)
Q Consensus 213 nLt~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~ 253 (261)
... .++..+.+....+|++..|+|.++..+.|..++.
T Consensus 441 G~~----~a~n~g~~~a~g~~i~~ld~D~~~~~~~l~~~~~ 477 (625)
T 2z86_A 441 GIG----SASNTAVRLCRGFYIGQLDSDDFLEPDAVELCLD 477 (625)
T ss_dssp CHH----HHHHHHHHHCCSSEEEECCTTCEECTTHHHHHHH
T ss_pred CHH----HHHHHHHHhcCCCEEEEECCCcccChhHHHHHHH
Confidence 222 2345555556889999999999999888876654
No 8
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=45.81 E-value=1.6e+02 Score=27.22 Aligned_cols=53 Identities=9% Similarity=-0.155 Sum_probs=34.9
Q ss_pred hcCCCeEEEeccCCCCChHHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhh
Q 024861 197 AQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGICFCNLSI 254 (261)
Q Consensus 197 ~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~~ 254 (261)
+.+..+-.+...+.. . + -.++..+.+....+|++..|+|+.+.++.|..++..
T Consensus 118 ~~~~~v~vi~~~~n~-G---~-~~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~ll~~ 170 (501)
T 2ffu_A 118 GKIEKVRVLRNDRRE-G---L-MRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLER 170 (501)
T ss_dssp GGBTTEEEEECSSCC-H---H-HHHHHHHHHHCCSSEEEECCSSEEECTTCHHHHHHH
T ss_pred hcCCCEEEEECCCCc-C---H-HHHHHHHHHhcCCCEEEEECCCcccCccHHHHHHHH
Confidence 445666666554432 1 2 234445555558999999999999998877766653
No 9
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=33.30 E-value=36 Score=22.39 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=21.6
Q ss_pred hHHHHHHHhhhcccccCCcccchhhhhhHHHHHHHHhhhcc
Q 024861 70 QDVAKEVLKTRGAIHDGSVESDRTLDKTIGQLQMELAASRS 110 (261)
Q Consensus 70 ~~~~~~v~~t~~~i~~~~~~~~~~~~k~~~~lemela~~~~ 110 (261)
.|++.++...|+ +|+|+|.+||-.|.+-..
T Consensus 8 ydlvsel~~r~e-----------~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 8 YDMISDLNERSE-----------DFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhH-----------HHHHHHHHHHHHHHHHHH
Confidence 356666666555 788999999998876543
No 10
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=27.88 E-value=3.9e+02 Score=25.16 Aligned_cols=32 Identities=9% Similarity=-0.018 Sum_probs=24.7
Q ss_pred HHHHhhcCCccEEEEeCCceEEehHHHHHHHh
Q 024861 222 FSTAVAKWDADFYVKVDDDVHVNLGICFCNLS 253 (261)
Q Consensus 222 f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~ 253 (261)
+..+.+....+|++..|+|..+..+.|..++.
T Consensus 166 ~N~g~~~a~g~~v~~lD~D~~~~~~~l~~~~~ 197 (625)
T 2z86_A 166 RNLGLRAAKYNYVAILDCDMAPNPLWVQSYME 197 (625)
T ss_dssp HHHHHHHCCSSEEEEECTTEEECTTHHHHHHH
T ss_pred HHHHHHhCCcCEEEEECCCCCCCHHHHHHHHH
Confidence 34455555899999999999999887766654
No 11
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=26.23 E-value=40 Score=20.45 Aligned_cols=23 Identities=9% Similarity=0.433 Sum_probs=19.9
Q ss_pred ccchhHHHHHHHHHHHHHHHhcC
Q 024861 11 ISTKWIPFVCLFCFALGILFSNL 33 (261)
Q Consensus 11 ~~~~~~~~l~~~~~~~~~~~~~r 33 (261)
++--|+.++.+|+|-+.+.+=||
T Consensus 4 vsl~WaalmvvftfSlslVVWGR 26 (29)
T 1vf5_H 4 DVLGWVALLVVFTWSIAMVVWGR 26 (29)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhheeeeEEEEec
Confidence 56679999999999999988776
No 12
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=25.04 E-value=27 Score=21.26 Aligned_cols=18 Identities=39% Similarity=0.586 Sum_probs=15.8
Q ss_pred hhhhhHHHHHHHHhhhcc
Q 024861 93 TLDKTIGQLQMELAASRS 110 (261)
Q Consensus 93 ~~~k~~~~lemela~~~~ 110 (261)
.|.|.|+.|..|.|+-++
T Consensus 13 alkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 13 ALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 788999999999998765
No 13
>1q90_N Cytochrome B6F complex subunit PETN; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.27.1
Probab=22.78 E-value=41 Score=20.72 Aligned_cols=23 Identities=17% Similarity=0.509 Sum_probs=20.0
Q ss_pred ccchhHHHHHHHHHHHHHHHhcC
Q 024861 11 ISTKWIPFVCLFCFALGILFSNL 33 (261)
Q Consensus 11 ~~~~~~~~l~~~~~~~~~~~~~r 33 (261)
++--|+.++.+|+|-+.+.+=||
T Consensus 6 vsl~WaalmvvfTfSlslVVWGR 28 (31)
T 1q90_N 6 VQIGWAATCVMFSFSLSLVVWGR 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHhheeeEEEEEec
Confidence 46679999999999999988777
No 14
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=22.34 E-value=1.3e+02 Score=22.77 Aligned_cols=72 Identities=24% Similarity=0.265 Sum_probs=42.6
Q ss_pred EeCCCCCHHHHHHHHhhhcCCcchhhhhhcCCCEEEEEEeecCCCCCchhHHhhHHhhhcCCCeEEEec--cCCCCChHH
Q 024861 139 INTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEH--IEGYHELSA 216 (261)
Q Consensus 139 V~Sap~n~~rR~aIR~TW~~~~~~l~kLe~~~gi~vrFVIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~--~DsY~nLt~ 216 (261)
|.|+.++.+-|+.|...=-+ ++ -.++||-|.+.+.- ...+.|+++-|= -.|. .-..++|+.
T Consensus 31 irtatssqdirdiiksmkdn----------gk-plvvfvngasqndv----nefqneakkegv--sydvlkstdpeeltq 93 (112)
T 2lnd_A 31 IRTATSSQDIRDIIKSMKDN----------GK-PLVVFVNGASQNDV----NEFQNEAKKEGV--SYDVLKSTDPEELTQ 93 (112)
T ss_dssp EEEECSHHHHHHHHHHHTTC----------CS-CEEEEECSCCHHHH----HHHHHHHHHHTC--EEEEEECCCHHHHHH
T ss_pred eeeccchhhHHHHHHHHHhc----------CC-eEEEEecCcccccH----HHHHHHHHhcCc--chhhhccCCHHHHHH
Confidence 66777788888888543221 23 34679999886422 234455554441 1221 122357899
Q ss_pred HHHHHHHHHhh
Q 024861 217 KTKIFFSTAVA 227 (261)
Q Consensus 217 Ktl~~f~wa~~ 227 (261)
.+..+++.|-.
T Consensus 94 rvreflktags 104 (112)
T 2lnd_A 94 RVREFLKTAGS 104 (112)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHhccc
Confidence 99999988743
No 15
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=21.51 E-value=46 Score=19.56 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=12.8
Q ss_pred hhhhhHHHHHHHHhhh
Q 024861 93 TLDKTIGQLQMELAAS 108 (261)
Q Consensus 93 ~~~k~~~~lemela~~ 108 (261)
.|...|++||.|.|+-
T Consensus 11 rlkqeiaaleyeiaal 26 (28)
T 3ra3_B 11 RLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4566799999999875
No 16
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=20.19 E-value=63 Score=29.54 Aligned_cols=32 Identities=16% Similarity=0.096 Sum_probs=24.2
Q ss_pred HHHHHHhhcCCccEEEEeCCceEEehHHHHHH
Q 024861 220 IFFSTAVAKWDADFYVKVDDDVHVNLGICFCN 251 (261)
Q Consensus 220 ~~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~ 251 (261)
.++.++.+...+++++.+|||+.+.++=+.-+
T Consensus 89 ~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~ 120 (343)
T 1fo8_A 89 WALGQIFHNFNYPAAVVVEDDLEVAPDFFEYF 120 (343)
T ss_dssp HHHHHHHTTSCCSEEEEEETTEEECTTHHHHH
T ss_pred HHHHHHHHhccCCEEEEEcCCCeECHHHHHHH
Confidence 45556655557999999999999999765433
Done!