Query 024861
Match_columns 261
No_of_seqs 259 out of 1109
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 15:41:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024861.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024861hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1omza_ c.68.1.15 (A:) Alpha-1 49.9 26 0.0019 25.3 7.3 32 223-254 74-105 (265)
2 d1q90n_ f.23.27.1 (N:) PetN su 41.9 7.7 0.00056 22.2 2.1 22 12-33 7-28 (31)
3 d1qg8a_ c.68.1.1 (A:) Spore co 33.3 24 0.0017 27.0 4.7 36 222-257 80-118 (255)
4 d1xhba2 c.68.1.17 (A:95-422) P 33.1 1.1E+02 0.0077 24.1 12.5 64 185-253 66-130 (328)
5 d1jb0j_ f.23.18.1 (J:) Subunit 22.4 31 0.0022 21.0 2.6 28 11-38 8-36 (41)
6 d1s4na_ c.68.1.16 (A:) Glycoli 13.3 38 0.0028 29.2 2.0 26 230-255 136-164 (339)
7 d2e74h1 f.23.27.1 (H:3-29) Pet 12.7 82 0.0059 17.0 2.6 20 14-33 5-24 (27)
8 d1owxa_ d.58.7.1 (A:) Lupus LA 11.3 1.2E+02 0.0089 20.6 4.1 41 166-209 5-45 (113)
9 d1fo8a_ c.68.1.10 (A:) N-acety 10.9 1.3E+02 0.0093 25.6 4.8 33 217-249 82-118 (343)
10 d2cfxa2 d.58.4.2 (A:64-140) Tr 8.7 52 0.0038 21.2 0.9 27 230-259 37-63 (77)
No 1
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=49.94 E-value=26 Score=25.31 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=25.1
Q ss_pred HHHhhcCCccEEEEeCCceEEehHHHHHHHhh
Q 024861 223 STAVAKWDADFYVKVDDDVHVNLGICFCNLSI 254 (261)
Q Consensus 223 ~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~~ 254 (261)
..+.+..+.+|++.+|||..+..+.|...++.
T Consensus 74 n~~~~~a~ge~i~~lD~D~~~~~~~l~~l~~~ 105 (265)
T d1omza_ 74 LQVFPEVETNAVLMVDDDTLISAQDLVFAFSI 105 (265)
T ss_dssp GSCCTTCCSSEEEEECTTEEECHHHHHHHHHH
T ss_pred hhhHHhCCcCEEEEeCcccCCCHHHHHHHHHH
Confidence 34455558899999999999999887776654
No 2
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=41.86 E-value=7.7 Score=22.17 Aligned_cols=22 Identities=18% Similarity=0.486 Sum_probs=18.8
Q ss_pred cchhHHHHHHHHHHHHHHHhcC
Q 024861 12 STKWIPFVCLFCFALGILFSNL 33 (261)
Q Consensus 12 ~~~~~~~l~~~~~~~~~~~~~r 33 (261)
---|..++.+|||-+.+.+-||
T Consensus 7 ~~awaa~~atfsfslslvvwgr 28 (31)
T d1q90n_ 7 QIGWAATCVMFSFSLSLVVWGR 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EhHHHHHHHhheeeEEEEEEec
Confidence 3458999999999999998777
No 3
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=33.31 E-value=24 Score=27.04 Aligned_cols=36 Identities=11% Similarity=0.023 Sum_probs=26.4
Q ss_pred HHHHhhcCCccEEEEeCCceEEehHHHHH---HHhhccc
Q 024861 222 FSTAVAKWDADFYVKVDDDVHVNLGICFC---NLSILLF 257 (261)
Q Consensus 222 f~wa~~~~~adF~lKvDDDvfVnl~~L~~---~L~~~p~ 257 (261)
+..+.+..+.+|++.+|+|.++.++.|.. .+..+|.
T Consensus 80 ~N~gi~~a~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~~~ 118 (255)
T d1qg8a_ 80 INQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHPE 118 (255)
T ss_dssp HHHHHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHCTT
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHhCCC
Confidence 44555656899999999999999776654 4445664
No 4
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.09 E-value=1.1e+02 Score=24.11 Aligned_cols=64 Identities=13% Similarity=-0.007 Sum_probs=38.5
Q ss_pred CchhHHhhHHhhhcCCCeE-EEeccCCCCChHHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHh
Q 024861 185 NSILDKAIDSEDAQHKDFL-RLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGICFCNLS 253 (261)
Q Consensus 185 ~~~l~~~I~~E~~~ygDIL-~ld~~DsY~nLt~Ktl~~f~wa~~~~~adF~lKvDDDvfVnl~~L~~~L~ 253 (261)
++.....+++-.+++.+-+ ++...++. ..+. +...+.+....+|++.+|+|+.+..+.|..++.
T Consensus 66 d~~~~~~l~~~~~~~~~~i~vi~~~~n~-G~~~----a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~~ 130 (328)
T d1xhba2 66 RDFLKRPLESYVKKLKVPVHVIRMEQRS-GLIR----ARLKGAAVSRGQVITFLDAHCECTAGWLEPLLA 130 (328)
T ss_dssp CGGGTHHHHHHHHSSSSCEEEEECSSCC-CHHH----HHHHHHHHCCSSEEEEEESSEEECTTCHHHHHH
T ss_pred hhhHHHHHHHHHHhcCCCeEEEEecccc-cchH----HHHHHHHhhhcceeeecCcccccChhHHHHHHH
Confidence 3444444444455665543 33333322 2222 345556666899999999999999887766543
No 5
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=22.36 E-value=31 Score=20.98 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=22.0
Q ss_pred ccchhHHHHHHHHHHHHHHH-hcCCCCCC
Q 024861 11 ISTKWIPFVCLFCFALGILF-SNLTWNPP 38 (261)
Q Consensus 11 ~~~~~~~~l~~~~~~~~~~~-~~r~w~~~ 38 (261)
+|+-.|+...-++|.||+++ .||+..++
T Consensus 8 lstAPVla~~w~~~tAG~lIEiNRFfPD~ 36 (41)
T d1jb0j_ 8 LSTAPVLAAIWMTITAGILIEFNRFYPDL 36 (41)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 56667888888999999986 68877654
No 6
>d1s4na_ c.68.1.16 (A:) Glycolipid 2-alpha-mannosyltransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.27 E-value=38 Score=29.17 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=18.2
Q ss_pred CccEEEEeCCceEEeh--H-HHHHHHhhc
Q 024861 230 DADFYVKVDDDVHVNL--G-ICFCNLSIL 255 (261)
Q Consensus 230 ~adF~lKvDDDvfVnl--~-~L~~~L~~~ 255 (261)
+++||+++|||+++.= + -+..+++.+
T Consensus 136 ~YdYywRvdpD~~f~cdI~yD~F~~M~~n 164 (339)
T d1s4na_ 136 EYDWYWRVEPDIKLYCDINYDVFKWMQEN 164 (339)
T ss_dssp TCSEEEECCTTCEECSCCCSCHHHHHHHT
T ss_pred ccceEEEeCCCcEEecCCCCCHHHHHhhc
Confidence 7999999999998742 1 233455544
No 7
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=12.68 E-value=82 Score=17.00 Aligned_cols=20 Identities=10% Similarity=0.599 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHhcC
Q 024861 14 KWIPFVCLFCFALGILFSNL 33 (261)
Q Consensus 14 ~~~~~l~~~~~~~~~~~~~r 33 (261)
-|+.+|.+|..-..|.+-||
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 48999999999888888776
No 8
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.27 E-value=1.2e+02 Score=20.65 Aligned_cols=41 Identities=12% Similarity=0.236 Sum_probs=29.6
Q ss_pred hhcCCCEEEEEEeecCCCCCchhHHhhHHhhhcCCCeEEEeccC
Q 024861 166 LEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIE 209 (261)
Q Consensus 166 Le~~~gi~vrFVIG~s~~~~~~l~~~I~~E~~~ygDIL~ld~~D 209 (261)
++...|..++||=+-+. ......|.+--.+||+|..+++..
T Consensus 5 ~~~~~g~~~~fvgnL~~---~~tee~Lk~~F~~fG~V~~v~i~~ 45 (113)
T d1owxa_ 5 LEEKIGCLLKFSGDLDD---QTCREDLHILFSNHGEIKWIDFVR 45 (113)
T ss_dssp CSCCCCCEEEEEESCCS---SCCHHHHHHHTCSSCCEEEEECCT
T ss_pred cCCCCCCeEEEECCCCC---CCCHHHHHHHHHhcCChheEEEec
Confidence 34577877777755553 344567888899999999999764
No 9
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=10.91 E-value=1.3e+02 Score=25.57 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=23.1
Q ss_pred HHHHHHHHHhh----cCCccEEEEeCCceEEehHHHH
Q 024861 217 KTKIFFSTAVA----KWDADFYVKVDDDVHVNLGICF 249 (261)
Q Consensus 217 Ktl~~f~wa~~----~~~adF~lKvDDDvfVnl~~L~ 249 (261)
+....+.||.. ...++.++.+.||..+.++-+-
T Consensus 82 giarhy~~AL~~~F~~~~~~~~IiLEDDl~~spdFf~ 118 (343)
T d1fo8a_ 82 KIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFE 118 (343)
T ss_dssp HHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHH
T ss_pred HHHHHHHHHHHHHhcccCCceEEEEecCceeeHHHHH
Confidence 33334445544 4467999999999999987663
No 10
>d2cfxa2 d.58.4.2 (A:64-140) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=8.65 E-value=52 Score=21.20 Aligned_cols=27 Identities=11% Similarity=-0.084 Sum_probs=18.5
Q ss_pred CccEEEEeCCceEEehHHHHHHHhhccccc
Q 024861 230 DADFYVKVDDDVHVNLGICFCNLSILLFII 259 (261)
Q Consensus 230 ~adF~lKvDDDvfVnl~~L~~~L~~~p~~~ 259 (261)
+++|++|+ ..-+++.|..+|.+.|++.
T Consensus 37 ~~D~il~v---~~~d~~~l~~~i~~l~~v~ 63 (77)
T d2cfxa2 37 AACYMLKI---NAESLEAVEDFINKTSPYA 63 (77)
T ss_dssp SSSEEEEE---EESSHHHHHHHHHHHTTTE
T ss_pred CCCEEEEE---EECCHHHHHHHHhhCCCcc
Confidence 56666665 3445788888888877764
Done!