BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024864
(261 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HD7|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3HD7|F Chain F, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3IPD|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
pdb|3IPD|F Chain F, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
Length = 109
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 155 HMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNM 214
HM+ S+ +Q + E +R + +E++I EL +F +A +V QGE+ RI+ N+
Sbjct: 3 HMDSSISKQALSEIE----TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNV 58
Query: 215 DESLANVEGARNALLRHLNQISSNRW--LMIKIFAVII 250
+ ++ VE A + + + S R +MI I VI+
Sbjct: 59 EHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVIL 96
>pdb|1L4A|B Chain B, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 88
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 33/53 (62%)
Query: 173 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGAR 225
++R + +E++I EL +F +A +V QGE+ RI+ N++ ++ +E A+
Sbjct: 22 EARHADIMKLETSIRELHDMFMDMAMLVESQGEMIDRIEYNVEAAVDYIETAK 74
>pdb|1HVV|A Chain A, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|B Chain B, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|C Chain C, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|D Chain D, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
Length = 75
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 173 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 224
++R + +E++I EL +F +A +V QGE+ RI+ N++ ++ VE A
Sbjct: 7 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 58
>pdb|1SFC|B Chain B, Neuronal Synaptic Fusion Complex
pdb|1SFC|F Chain F, Neuronal Synaptic Fusion Complex
pdb|1SFC|J Chain J, Neuronal Synaptic Fusion Complex
Length = 83
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 173 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 224
++R + +E++I EL +F +A +V QGE+ RI+ N++ ++ VE A
Sbjct: 17 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 68
>pdb|1URQ|B Chain B, Crystal Structure Of Neuronal Q-Snares In Complex With
R-Snare Motif Of Tomosyn
Length = 75
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 173 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 224
++R + +E++I EL +F +A +V QGE+ RI+ N++ ++ VE A
Sbjct: 12 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 63
>pdb|3C98|B Chain B, Revised Structure Of The Munc18a-Syntaxin1 Complex
Length = 279
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 173 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 224
++R + +E++I EL +F +A +V QGE+ RI+ N++ ++ VE A
Sbjct: 208 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 259
>pdb|2XHE|B Chain B, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
Monosiga Brevicollis
Length = 279
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%)
Query: 170 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 224
N + R + +E ++ EL +FT ++T+VA QGE+ RI+ ++++S V+ A
Sbjct: 210 NEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKA 264
>pdb|3RK2|B Chain B, Truncated Snare Complex
pdb|3RK2|F Chain F, Truncated Snare Complex
pdb|3RK3|B Chain B, Truncated Snare Complex With Complexin
pdb|3RL0|B Chain B, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|F Chain F, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|J Chain J, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|N Chain N, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|R Chain R, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|V Chain V, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|Z Chain Z, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|DD Chain d, Truncated Snare Complex With Complexin (P1)
Length = 65
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 173 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 224
++R + +E++I EL +F +A +V QGE+ RI+ N++ ++ VE A
Sbjct: 8 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 59
>pdb|1N7S|B Chain B, High Resolution Structure Of A Truncated Neuronal Snare
Complex
Length = 68
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 173 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 224
++R + +E++I EL +F +A +V QGE+ RI+ N++ ++ VE A
Sbjct: 8 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 59
>pdb|1JTH|B Chain B, Crystal Structure And Biophysical Properties Of A Complex
Between The N-Terminal Region Of Snap25 And The Snare
Region Of Syntaxin 1a
pdb|1JTH|D Chain D, Crystal Structure And Biophysical Properties Of A Complex
Between The N-Terminal Region Of Snap25 And The Snare
Region Of Syntaxin 1a
Length = 77
Score = 32.0 bits (71), Expect = 0.32, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 173 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 224
++R + +E++I EL +F +A +V QGE+ RI+ N++ ++ VE A
Sbjct: 6 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 57
>pdb|1KIL|B Chain B, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX
Length = 62
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 173 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 224
++R + +E++I EL +F +A +V QGE+ RI+ N++ ++ VE A
Sbjct: 8 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 59
>pdb|1B54|A Chain A, Crystal Structure Of A Yeast Hypothetical Protein-A
Structure From Bnl's Human Proteome Project
Length = 257
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 31 SDLQTLQNLEIVE--GNYSQDRVVHSTTVCDDLKSKLMGA--TKELQDVLTTRTENIKAH 86
SD+Q L + + E NY Q+ + + + DD+K +G T + +D+ + N+ +
Sbjct: 54 SDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCKDL--AKVPNLYSV 111
Query: 87 ESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSAL 131
E+ + A L +S R QP P + +N S Q S L
Sbjct: 112 ETIDSLKKAKKLNES--RAKFQPDCNPILCNVQINTSHEDQKSGL 154
>pdb|1CT5|A Chain A, Crystal Structure Of Yeast Hypothetical Protein
Ybl036c-Selenomet Crystal
Length = 256
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 31 SDLQTLQNLEIVE--GNYSQDRVVHSTTVCDDLKSKLMGA--TKELQDVLTTRTENIKAH 86
SD+Q L + + E NY Q+ + + + DD+K +G T + +D+ + N+ +
Sbjct: 53 SDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCKDL--AKVPNLYSV 110
Query: 87 ESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSAL 131
E+ + A L +S R QP P + +N S Q S L
Sbjct: 111 ETIDSLKKAKKLNES--RAKFQPDCNPILCNVQINTSHEDQKSGL 153
>pdb|3VR8|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VR8|E Chain E, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VRB|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
pdb|3VRB|E Chain E, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
Length = 645
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 71 ELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEP 113
ELQ+++ T+ I A E+RK+ A+A D P R+ ++P
Sbjct: 548 ELQNLMLNATQTIVAAENRKESRGAHARDDFPKREDEYDYSKP 590
>pdb|4ADN|A Chain A, Fusidic Acid Resistance Protein Fusb
pdb|4ADN|B Chain B, Fusidic Acid Resistance Protein Fusb
pdb|4ADO|A Chain A, Fusidic Acid Resistance Protein Fusb
pdb|4ADO|B Chain B, Fusidic Acid Resistance Protein Fusb
Length = 222
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 159 SMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESL 218
M + P Q NY +S + L NV T+ + + + E+ IDD+++ESL
Sbjct: 9 GMKTMIYPHQYNYIRSVILRLKNVYKTVNDKETVKVIQSETYNDINEIFGHIDDDIEESL 68
Query: 219 A 219
Sbjct: 69 K 69
>pdb|4HHT|A Chain A, T. Maritima Rnase H2 G21s In Complex With Nucleic Acid
Substrate And Calcium Ions
Length = 237
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 25 ALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTR 79
A+N AL +L + +V+G + V + V D KSKL+GA + V R
Sbjct: 88 AMNRALENLSVKPSFVLVDGKGIELSVPGTCLVKGDQKSKLIGAASIVAKVFRDR 142
>pdb|3O3G|A Chain A, T. Maritima Rnase H2 In Complex With Nucleic Acid
Substrate And Calcium Ions
Length = 222
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 25 ALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTR 79
A+N AL +L + +V+G + V + V D KSKL+GA + V R
Sbjct: 88 AMNRALENLSVKPSFVLVDGKGIELSVPGTCLVKGDQKSKLIGAASIVAKVFRDR 142
>pdb|1V82|A Chain A, Crystal Structure Of Human Glcat-P Apo Form
pdb|1V82|B Chain B, Crystal Structure Of Human Glcat-P Apo Form
pdb|1V83|A Chain A, Crystal Structure Of Human Glcat-P In Complex With Udp And
Mn2+
pdb|1V83|B Chain B, Crystal Structure Of Human Glcat-P In Complex With Udp And
Mn2+
pdb|1V84|A Chain A, Crystal Structure Of Human Glcat-p In Complex With N-
Acetyllactosamine, Udp, And Mn2+
pdb|1V84|B Chain B, Crystal Structure Of Human Glcat-p In Complex With N-
Acetyllactosamine, Udp, And Mn2+
Length = 253
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 26 LNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTEN-IK 84
L + L Q L V+G Y + ++ +DL+ K TK L V TRTE +
Sbjct: 181 LRLILQRSQAYFKLRGVKGGYQESSLLRELVTLNDLEPKAANCTKIL--VWHTRTEKPVL 238
Query: 85 AHESRK 90
+E +K
Sbjct: 239 VNEGKK 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,731,865
Number of Sequences: 62578
Number of extensions: 240203
Number of successful extensions: 663
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 645
Number of HSP's gapped (non-prelim): 24
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)