Query 024864
Match_columns 261
No_of_seqs 167 out of 1025
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:59:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024864.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024864hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0812 SNARE protein SED5/Syn 100.0 8.6E-46 1.9E-50 324.1 26.5 240 2-261 71-311 (311)
2 KOG0809 SNARE protein TLG2/Syn 100.0 4.1E-37 8.8E-42 271.0 20.7 210 2-260 89-301 (305)
3 KOG0810 SNARE protein Syntaxin 99.9 1.2E-24 2.6E-29 196.4 21.1 201 11-254 79-283 (297)
4 COG5325 t-SNARE complex subuni 99.9 1.3E-23 2.8E-28 184.3 20.6 203 3-258 67-276 (283)
5 KOG0811 SNARE protein PEP12/VA 99.9 7.2E-23 1.6E-27 182.1 20.3 90 167-256 170-261 (269)
6 COG5074 t-SNARE complex subuni 99.8 1.4E-18 3.1E-23 149.0 16.4 163 59-257 103-268 (280)
7 PF05739 SNARE: SNARE domain; 99.5 5.2E-13 1.1E-17 93.9 10.2 63 174-236 1-63 (63)
8 cd00193 t_SNARE Soluble NSF (N 99.4 2.3E-12 5.1E-17 89.0 8.3 59 173-231 2-60 (60)
9 smart00397 t_SNARE Helical reg 99.3 3.2E-11 6.9E-16 84.7 9.2 63 169-231 4-66 (66)
10 KOG3894 SNARE protein Syntaxin 98.9 2.9E-07 6.2E-12 83.1 19.6 97 160-257 211-311 (316)
11 KOG3202 SNARE protein TLG1/Syn 98.7 1.8E-05 4E-10 69.6 22.8 88 172-260 147-234 (235)
12 KOG0811 SNARE protein PEP12/VA 98.0 0.0072 1.6E-07 54.4 23.2 95 162-258 172-266 (269)
13 PF00957 Synaptobrevin: Synapt 97.8 0.0011 2.3E-08 49.7 12.5 55 177-231 3-57 (89)
14 KOG0810 SNARE protein Syntaxin 97.6 0.0028 6.1E-08 57.9 15.3 207 9-259 84-291 (297)
15 KOG3385 V-SNARE [Intracellular 97.3 0.0018 3.9E-08 50.6 8.6 82 174-257 33-115 (118)
16 KOG0860 Synaptobrevin/VAMP-lik 97.1 0.014 3.1E-07 45.8 11.4 53 177-233 29-81 (116)
17 PF00804 Syntaxin: Syntaxin; 97.0 0.0064 1.4E-07 45.7 8.7 59 9-68 44-102 (103)
18 PF09753 Use1: Membrane fusion 96.8 0.041 8.9E-07 49.0 13.4 74 176-253 169-242 (251)
19 COG5074 t-SNARE complex subuni 96.8 0.017 3.8E-07 50.6 10.4 92 169-260 170-268 (280)
20 cd00179 SynN Syntaxin N-termin 96.7 0.047 1E-06 44.3 12.3 83 10-94 44-126 (151)
21 smart00503 SynN Syntaxin N-ter 96.3 0.051 1.1E-06 42.0 9.6 71 10-83 46-116 (117)
22 KOG1666 V-SNARE [Intracellular 96.3 0.68 1.5E-05 40.2 21.5 80 172-254 133-212 (220)
23 COG5325 t-SNARE complex subuni 96.1 0.12 2.6E-06 46.4 12.1 91 169-259 180-274 (283)
24 KOG3208 SNARE protein GS28 [In 95.8 1.1 2.5E-05 39.0 20.0 58 200-257 172-229 (231)
25 PF03908 Sec20: Sec20; InterP 93.0 3 6.4E-05 31.2 12.0 60 199-259 30-89 (92)
26 KOG3251 Golgi SNAP receptor co 91.7 8.3 0.00018 33.6 22.6 76 10-91 29-104 (213)
27 PF09753 Use1: Membrane fusion 91.5 5.6 0.00012 35.3 12.8 82 173-258 158-243 (251)
28 KOG2678 Predicted membrane pro 91.4 6.1 0.00013 34.7 12.3 55 181-235 155-213 (244)
29 KOG3065 SNAP-25 (synaptosome-a 90.9 1.3 2.9E-05 40.0 8.3 57 174-230 215-271 (273)
30 KOG0860 Synaptobrevin/VAMP-lik 89.9 2 4.3E-05 33.9 7.4 18 214-231 69-86 (116)
31 PF05478 Prominin: Prominin; 89.6 4.6 9.9E-05 42.0 12.0 70 178-253 358-427 (806)
32 KOG0809 SNARE protein TLG2/Syn 88.3 4.6 9.9E-05 36.8 9.5 95 166-260 200-298 (305)
33 PF09889 DUF2116: Uncharacteri 88.0 0.81 1.7E-05 31.8 3.6 10 234-243 34-43 (59)
34 PF14523 Syntaxin_2: Syntaxin- 86.1 12 0.00026 27.9 10.7 68 10-85 33-100 (102)
35 PF00957 Synaptobrevin: Synapt 85.7 12 0.00026 27.5 11.7 24 167-190 21-44 (89)
36 PF09889 DUF2116: Uncharacteri 85.0 1.6 3.4E-05 30.3 3.8 29 231-259 28-56 (59)
37 KOG3850 Predicted membrane pro 84.6 25 0.00055 33.3 12.6 77 11-87 37-118 (455)
38 KOG0812 SNARE protein SED5/Syn 75.4 66 0.0014 29.4 11.9 93 168-260 211-307 (311)
39 KOG3202 SNARE protein TLG1/Syn 74.5 58 0.0012 28.9 11.1 94 158-256 140-233 (235)
40 PF03904 DUF334: Domain of unk 74.4 61 0.0013 28.6 12.7 88 170-259 64-168 (230)
41 KOG0859 Synaptobrevin/VAMP-lik 73.8 11 0.00023 32.6 6.0 61 176-240 124-184 (217)
42 PF14992 TMCO5: TMCO5 family 73.4 73 0.0016 29.0 12.0 58 171-228 124-181 (280)
43 PF10779 XhlA: Haemolysin XhlA 73.1 30 0.00066 24.5 9.9 21 237-257 49-69 (71)
44 PF10717 ODV-E18: Occlusion-de 68.3 6.5 0.00014 29.1 3.1 17 243-259 28-44 (85)
45 PF12352 V-SNARE_C: Snare regi 68.0 36 0.00079 23.3 10.1 55 179-233 10-64 (66)
46 cd00193 t_SNARE Soluble NSF (N 67.2 32 0.0007 22.5 8.2 55 181-235 3-57 (60)
47 PHA02844 putative transmembran 65.9 8.5 0.00018 27.8 3.2 12 237-248 45-56 (75)
48 PF06143 Baculo_11_kDa: Baculo 65.1 8.2 0.00018 28.7 3.1 11 249-259 45-55 (84)
49 KOG3065 SNAP-25 (synaptosome-a 64.7 55 0.0012 29.7 9.0 43 187-229 89-131 (273)
50 PHA03164 hypothetical protein; 64.5 5.2 0.00011 29.1 1.9 7 251-257 71-77 (88)
51 smart00503 SynN Syntaxin N-ter 63.9 61 0.0013 24.4 9.4 32 10-41 4-35 (117)
52 PHA02819 hypothetical protein; 59.2 13 0.00029 26.6 3.2 10 237-246 43-52 (71)
53 PF05957 DUF883: Bacterial pro 59.2 71 0.0015 23.7 11.6 67 182-248 7-82 (94)
54 PHA03054 IMV membrane protein; 59.1 14 0.00029 26.5 3.2 10 237-246 45-54 (72)
55 PHA02975 hypothetical protein; 57.6 15 0.00033 26.1 3.3 12 236-247 40-51 (69)
56 PF12911 OppC_N: N-terminal TM 56.9 24 0.00051 23.4 4.1 17 228-244 5-21 (56)
57 PF04906 Tweety: Tweety; Inte 56.7 82 0.0018 30.1 9.2 12 182-193 123-134 (406)
58 PF04102 SlyX: SlyX; InterPro 54.2 75 0.0016 22.4 7.2 48 178-225 5-52 (69)
59 PHA02650 hypothetical protein; 53.9 18 0.00039 26.5 3.2 8 237-244 46-53 (81)
60 KOG2678 Predicted membrane pro 52.4 1.7E+02 0.0036 25.9 12.2 6 234-239 209-214 (244)
61 PHA03240 envelope glycoprotein 52.2 13 0.00028 32.5 2.7 7 240-246 215-221 (258)
62 PF00804 Syntaxin: Syntaxin; 51.4 64 0.0014 23.4 6.2 64 12-75 5-68 (103)
63 KOG0859 Synaptobrevin/VAMP-lik 50.8 60 0.0013 28.1 6.4 17 67-83 20-36 (217)
64 PF07889 DUF1664: Protein of u 47.8 86 0.0019 25.1 6.6 42 172-213 84-125 (126)
65 PF06789 UPF0258: Uncharacteri 47.4 9.6 0.00021 31.5 1.1 21 223-243 114-135 (159)
66 PHA03164 hypothetical protein; 46.9 29 0.00062 25.3 3.3 20 241-260 58-77 (88)
67 PF10267 Tmemb_cc2: Predicted 46.6 2.7E+02 0.0059 26.7 18.1 68 177-250 276-348 (395)
68 PHA02692 hypothetical protein; 45.9 30 0.00065 24.8 3.3 11 236-246 41-51 (70)
69 cd00179 SynN Syntaxin N-termin 45.1 1.5E+02 0.0033 23.4 9.5 31 11-41 3-33 (151)
70 PF02346 Vac_Fusion: Chordopox 44.7 1E+02 0.0022 21.2 6.5 43 179-221 3-45 (57)
71 PF11395 DUF2873: Protein of u 43.8 39 0.00084 21.2 3.1 9 246-254 19-27 (43)
72 PF15188 CCDC-167: Coiled-coil 43.3 71 0.0015 23.8 5.1 19 237-255 65-83 (85)
73 PF12575 DUF3753: Protein of u 42.4 30 0.00064 25.0 2.8 21 235-255 40-60 (72)
74 PF09177 Syntaxin-6_N: Syntaxi 42.2 1.4E+02 0.0031 22.2 7.9 61 8-68 33-96 (97)
75 PF00482 T2SF: Type II secreti 42.2 50 0.0011 24.3 4.4 8 194-201 60-67 (124)
76 PF15102 TMEM154: TMEM154 prot 41.7 12 0.00025 30.8 0.8 20 241-260 59-78 (146)
77 PF06422 PDR_CDR: CDR ABC tran 41.0 32 0.00069 26.3 3.1 21 223-243 32-52 (103)
78 PHA02675 ORF104 fusion protein 40.8 1.5E+02 0.0033 22.0 6.7 36 186-221 39-74 (90)
79 KOG1666 V-SNARE [Intracellular 40.7 71 0.0015 28.0 5.4 21 213-233 164-184 (220)
80 PRK10573 type IV pilin biogene 39.5 1.1E+02 0.0024 28.7 7.2 39 182-220 111-149 (399)
81 PRK10299 PhoPQ regulatory prot 38.8 42 0.00091 22.1 2.8 17 236-252 2-18 (47)
82 PF11598 COMP: Cartilage oligo 38.7 73 0.0016 20.8 4.0 27 180-206 4-30 (45)
83 PRK00295 hypothetical protein; 38.3 1.4E+02 0.0031 21.0 7.8 46 179-224 7-52 (68)
84 PRK09793 methyl-accepting prot 38.3 3.6E+02 0.0077 26.4 10.7 55 170-224 429-483 (533)
85 smart00397 t_SNARE Helical reg 37.6 1.2E+02 0.0026 19.9 9.5 51 171-221 13-63 (66)
86 PF00523 Fusion_gly: Fusion gl 37.2 29 0.00062 34.2 2.8 59 17-75 139-197 (490)
87 PF05366 Sarcolipin: Sarcolipi 37.1 49 0.0011 19.4 2.6 23 237-259 4-26 (31)
88 PRK10884 SH3 domain-containing 37.1 2.8E+02 0.006 24.0 12.4 40 191-230 118-157 (206)
89 PF09125 COX2-transmemb: Cytoc 37.0 1.1E+02 0.0023 19.2 5.0 8 239-246 15-22 (38)
90 smart00502 BBC B-Box C-termina 37.0 1.8E+02 0.0039 21.8 8.5 54 182-235 37-91 (127)
91 PF05399 EVI2A: Ectropic viral 36.8 39 0.00084 29.5 3.2 17 241-257 132-149 (227)
92 PRK15041 methyl-accepting chem 35.7 4.1E+02 0.0089 26.2 10.8 55 169-223 432-486 (554)
93 COG4068 Uncharacterized protei 35.6 55 0.0012 22.7 3.1 9 241-249 43-51 (64)
94 TIGR02956 TMAO_torS TMAO reduc 34.3 4.6E+02 0.01 27.3 11.4 28 8-35 71-98 (968)
95 PF11945 WASH_WAHD: WAHD domai 34.3 2E+02 0.0044 26.4 7.7 35 190-224 35-69 (297)
96 KOG3443 Uncharacterized conser 34.2 2.9E+02 0.0062 23.3 9.4 49 195-243 32-80 (184)
97 PF03978 Borrelia_REV: Borreli 33.9 2.8E+02 0.006 23.1 9.4 64 10-89 28-99 (160)
98 PHA02650 hypothetical protein; 33.8 53 0.0011 24.1 3.0 21 238-258 44-64 (81)
99 PRK02793 phi X174 lysis protei 33.7 1.8E+02 0.0038 20.8 7.8 46 178-223 9-54 (72)
100 PF04272 Phospholamban: Phosph 33.5 67 0.0015 21.0 3.1 11 247-257 37-47 (52)
101 PF00523 Fusion_gly: Fusion gl 33.5 69 0.0015 31.6 4.7 21 209-229 442-462 (490)
102 PF04639 Baculo_E56: Baculovir 33.4 25 0.00055 32.0 1.6 18 242-259 281-298 (305)
103 PRK15048 methyl-accepting chem 33.3 4.7E+02 0.01 25.5 10.8 52 171-222 432-483 (553)
104 PRK04325 hypothetical protein; 33.0 1.8E+02 0.004 20.8 7.8 45 179-223 11-55 (74)
105 PF01601 Corona_S2: Coronaviru 32.7 3.5E+02 0.0075 27.4 9.4 76 11-97 256-331 (610)
106 cd07912 Tweety_N N-terminal do 32.0 4.8E+02 0.01 25.2 10.2 8 186-193 147-154 (418)
107 COG4064 MtrG Tetrahydromethano 31.2 2E+02 0.0043 20.6 6.4 9 208-216 25-33 (75)
108 PHA03054 IMV membrane protein; 31.1 65 0.0014 23.1 3.0 22 237-258 42-63 (72)
109 PF13800 Sigma_reg_N: Sigma fa 31.1 59 0.0013 24.2 3.1 9 237-245 8-16 (96)
110 PRK08307 stage III sporulation 31.0 3E+02 0.0066 22.8 7.7 13 186-198 108-120 (171)
111 PF07127 Nodulin_late: Late no 31.0 43 0.00093 22.4 2.1 17 242-258 4-20 (54)
112 PHA02819 hypothetical protein; 30.7 68 0.0015 23.0 3.1 21 238-258 41-61 (71)
113 PRK00736 hypothetical protein; 30.5 1.9E+02 0.0042 20.3 7.8 45 179-223 7-51 (68)
114 PF07332 DUF1469: Protein of u 30.3 2.3E+02 0.005 21.6 6.5 10 191-200 7-16 (121)
115 PHA03240 envelope glycoprotein 30.2 51 0.0011 28.9 2.9 19 238-256 210-228 (258)
116 COG4640 Predicted membrane pro 30.0 79 0.0017 30.3 4.3 10 223-232 31-40 (465)
117 PHA02513 V1 structural protein 29.9 1.1E+02 0.0023 24.2 4.3 17 243-259 67-83 (135)
118 COG3630 OadG Na+-transporting 29.5 59 0.0013 24.2 2.7 18 242-259 12-29 (84)
119 PF05961 Chordopox_A13L: Chord 29.5 70 0.0015 22.7 3.0 15 244-258 8-22 (68)
120 TIGR02120 GspF general secreti 29.5 2E+02 0.0043 27.0 7.1 39 186-224 117-155 (399)
121 PF01519 DUF16: Protein of unk 29.2 2.7E+02 0.0058 21.5 7.8 45 176-220 52-96 (102)
122 TIGR02120 GspF general secreti 29.0 4.8E+02 0.01 24.3 9.6 32 192-223 325-356 (399)
123 PF10960 DUF2762: Protein of u 28.9 47 0.001 23.8 2.1 14 245-258 14-27 (71)
124 PF09548 Spore_III_AB: Stage I 28.9 1.9E+02 0.0041 24.0 6.1 38 185-224 106-143 (170)
125 PF15183 MRAP: Melanocortin-2 28.6 68 0.0015 23.9 2.9 26 233-258 29-57 (90)
126 PHA03049 IMV membrane protein; 28.4 76 0.0016 22.5 3.0 15 244-258 8-22 (68)
127 TIGR02833 spore_III_AB stage I 28.4 3.5E+02 0.0075 22.5 7.7 29 186-216 107-135 (170)
128 PRK10600 nitrate/nitrite senso 28.1 3E+02 0.0065 26.9 8.4 6 53-58 16-21 (569)
129 COG2966 Uncharacterized conser 28.1 1.2E+02 0.0025 27.2 4.9 36 213-248 98-134 (250)
130 PF13314 DUF4083: Domain of un 28.1 83 0.0018 21.7 3.1 8 251-258 18-25 (58)
131 PRK10404 hypothetical protein; 28.1 2.7E+02 0.0059 21.2 12.2 62 187-248 19-89 (101)
132 PHA02844 putative transmembran 28.0 78 0.0017 22.9 3.1 20 239-258 44-63 (75)
133 KOG2546 Abl interactor ABI-1, 28.0 2.4E+02 0.0053 27.3 7.2 52 171-222 49-100 (483)
134 PF06072 Herpes_US9: Alphaherp 27.8 1.7E+02 0.0036 20.4 4.5 6 224-229 11-16 (60)
135 PF14523 Syntaxin_2: Syntaxin- 27.7 2.5E+02 0.0054 20.6 9.3 58 19-77 1-58 (102)
136 PF11166 DUF2951: Protein of u 27.6 2.8E+02 0.006 21.1 11.5 42 178-219 12-53 (98)
137 COG4238 Murein lipoprotein [Ce 27.6 2.5E+02 0.0053 20.5 5.7 39 196-234 30-68 (78)
138 TIGR01195 oadG_fam sodium pump 27.6 65 0.0014 23.6 2.7 10 245-254 12-21 (82)
139 PF09548 Spore_III_AB: Stage I 27.5 2.5E+02 0.0053 23.2 6.6 14 220-233 132-145 (170)
140 PF13253 DUF4044: Protein of u 27.5 53 0.0012 20.3 1.9 18 242-259 12-29 (35)
141 COG4372 Uncharacterized protei 27.4 5.7E+02 0.012 24.7 12.0 56 174-233 228-283 (499)
142 PF11239 DUF3040: Protein of u 27.0 88 0.0019 22.7 3.3 16 206-221 10-25 (82)
143 COG5415 Predicted integral mem 26.8 3.8E+02 0.0082 23.6 7.5 28 203-230 13-40 (251)
144 PRK02119 hypothetical protein; 26.5 2.4E+02 0.0053 20.1 8.1 47 177-223 9-55 (73)
145 PF05546 She9_MDM33: She9 / Md 26.3 4.4E+02 0.0095 23.0 9.2 26 58-83 41-66 (207)
146 PHA02414 hypothetical protein 26.2 3E+02 0.0065 21.1 8.0 50 178-231 30-79 (111)
147 PRK11875 psbT photosystem II r 25.8 1.1E+02 0.0024 18.4 2.9 10 250-259 13-22 (31)
148 PRK10381 LPS O-antigen length 25.4 86 0.0019 29.7 3.8 25 235-259 36-60 (377)
149 PF15188 CCDC-167: Coiled-coil 25.3 2.4E+02 0.0053 21.0 5.4 39 214-252 45-83 (85)
150 COG1459 PulF Type II secretory 25.3 2.4E+02 0.0053 26.9 6.8 38 186-223 114-151 (397)
151 KOG0862 Synaptobrevin/VAMP-lik 25.1 4.7E+02 0.01 22.9 8.8 31 181-211 138-168 (216)
152 PF10661 EssA: WXG100 protein 24.5 87 0.0019 25.6 3.2 10 249-258 130-139 (145)
153 PF14812 PBP1_TM: Transmembran 24.1 4.4 9.5E-05 29.9 -4.0 10 234-243 61-70 (81)
154 PF04210 MtrG: Tetrahydrometha 24.0 2.8E+02 0.006 19.9 6.8 11 207-217 21-31 (70)
155 COG3736 VirB8 Type IV secretor 23.9 1.8E+02 0.0038 26.0 5.2 18 240-257 44-61 (239)
156 PHA02689 ORF051 putative membr 23.7 1E+02 0.0022 24.7 3.3 23 237-259 27-49 (128)
157 PF05739 SNARE: SNARE domain; 23.7 2.3E+02 0.0049 18.8 9.9 52 173-224 7-58 (63)
158 PF15106 TMEM156: TMEM156 prot 23.6 84 0.0018 27.5 3.0 12 247-258 183-194 (226)
159 COG4942 Membrane-bound metallo 23.1 6.9E+02 0.015 24.2 10.4 59 172-230 40-98 (420)
160 PF11190 DUF2976: Protein of u 23.1 1.9E+02 0.0041 21.6 4.5 10 224-233 43-52 (87)
161 PF14715 FixP_N: N-terminal do 23.0 1.3E+02 0.0027 20.2 3.2 18 242-259 24-41 (51)
162 PF01405 PsbT: Photosystem II 22.9 1.7E+02 0.0036 17.4 3.2 11 249-259 12-22 (29)
163 PHA02967 hypothetical protein; 22.8 1E+02 0.0022 24.7 3.1 23 237-259 24-46 (128)
164 PF02532 PsbI: Photosystem II 22.6 1.5E+02 0.0033 18.4 3.1 12 247-258 10-21 (36)
165 PF00015 MCPsignal: Methyl-acc 22.5 4.4E+02 0.0095 21.6 11.1 61 169-229 127-187 (213)
166 PF13937 DUF4212: Domain of un 22.4 85 0.0018 23.1 2.5 26 231-256 3-28 (81)
167 PRK10132 hypothetical protein; 22.0 3.8E+02 0.0082 20.7 11.7 62 188-249 27-96 (108)
168 CHL00031 psbT photosystem II p 21.9 1.2E+02 0.0025 18.5 2.5 12 248-259 11-22 (33)
169 PF11026 DUF2721: Protein of u 21.8 4.1E+02 0.0088 21.0 7.2 16 225-240 49-64 (130)
170 PF05055 DUF677: Protein of un 21.7 3.4E+02 0.0073 25.4 6.9 13 199-211 151-163 (336)
171 PF04999 FtsL: Cell division p 21.5 1.5E+02 0.0033 21.9 3.8 8 237-244 11-18 (97)
172 PF00584 SecE: SecE/Sec61-gamm 21.4 1.4E+02 0.003 19.9 3.2 14 219-232 4-17 (57)
173 COG5416 Uncharacterized integr 21.1 1E+02 0.0022 23.5 2.7 22 236-257 20-41 (98)
174 PF06738 DUF1212: Protein of u 21.1 1.8E+02 0.0039 24.2 4.6 29 217-245 80-109 (193)
175 PHA02955 hypothetical protein; 21.0 1E+02 0.0022 27.0 3.0 19 237-255 178-196 (213)
176 PF04518 Effector_1: Effector 20.9 7.3E+02 0.016 23.7 8.9 27 172-198 352-378 (379)
177 TIGR03715 KxYKxGKxW KxYKxGKxW 20.8 77 0.0017 18.4 1.6 14 234-247 7-20 (29)
178 PF15183 MRAP: Melanocortin-2 20.8 84 0.0018 23.4 2.1 19 239-257 42-60 (90)
179 PF04505 Dispanin: Interferon- 20.7 77 0.0017 23.2 2.0 6 228-233 53-58 (82)
180 PF01616 Orbi_NS3: Orbivirus N 20.5 1.7E+02 0.0037 25.3 4.2 22 225-246 76-97 (195)
181 PF14992 TMCO5: TMCO5 family 20.4 5.9E+02 0.013 23.2 7.9 6 70-75 63-68 (280)
182 COG4499 Predicted membrane pro 20.3 1.7E+02 0.0036 28.1 4.5 10 234-243 211-220 (434)
183 PRK04406 hypothetical protein; 20.2 3.4E+02 0.0074 19.5 8.4 46 178-223 12-57 (75)
No 1
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.6e-46 Score=324.13 Aligned_cols=240 Identities=40% Similarity=0.576 Sum_probs=190.2
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024864 2 SSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTE 81 (261)
Q Consensus 2 k~~FdD~~~eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~~~~~~~~~~~~~~~nvv~~L~~kl~~~s~~Fr~~~~~r~~ 81 (261)
|++|||++.||.+||+.||++|..++..|..|+.+.+..+. ..+.+...|+++||..|+++|++++++|+.+++.|++
T Consensus 71 ks~f~Dr~VeI~eLT~iikqdi~sln~~i~~Lqei~~~~gn--~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rte 148 (311)
T KOG0812|consen 71 KSLFDDRPVEIQELTFIIKQDITSLNSQIAQLQEIVKANGN--LSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTE 148 (311)
T ss_pred cccccCcchhhHHHHHHHhcchHHHHHHHHHHHHHHHHhcc--ccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 79999999999999999999999999999999999854432 2235669999999999999999999999999999999
Q ss_pred HHHHHHhHhhhhhccccCCCcc-ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccCCcCCCCCchhhhhhH
Q 024864 82 NIKAHESRKQIFSANALRDSPF-RQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSM 160 (261)
Q Consensus 82 ~lk~~~~Rr~~f~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~ 160 (261)
++|+.+.||++|+...++.++. ++..+. .+.|+. .+. + |. ..+++...+.+..+.+.. +++
T Consensus 149 nmka~k~R~dkfs~~~a~~~a~p~~n~~a--~~~~~~-------~l~-~---~~--~~~sq~~~~ln~gd~~~~---qqq 210 (311)
T KOG0812|consen 149 NMKAVKNRRDKFSASYASLNANPVSNSAA--RLHPLK-------LLV-D---PK--DEASQDVESLNMGDSSNP---QQQ 210 (311)
T ss_pred HHHHHhhHHHHhccccCCCCCcccCcccc--cCCchh-------hhc-C---ch--hhcccccccccccCCCCC---HHH
Confidence 9999999999998754332220 110000 000100 000 0 00 000000000111111111 256
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCch
Q 024864 161 LQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRW 240 (261)
Q Consensus 161 q~q~~~~~~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~ 240 (261)
|++++++.++|+++|..++++||.+|.||++||.+||+||.+|||++.|||.||+++..||++|+.+|.|++++.++|||
T Consensus 211 Qm~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRw 290 (311)
T KOG0812|consen 211 QMALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRW 290 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchH
Confidence 77778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcC
Q 024864 241 LMIKIFAVIIFFLTVFMFFVA 261 (261)
Q Consensus 241 ~~~~i~~vl~i~~~~~~~~~~ 261 (261)
++++||+|+|||+++|+||+|
T Consensus 291 LmvkiF~i~ivFflvfvlf~~ 311 (311)
T KOG0812|consen 291 LMVKIFGILIVFFLVFVLFLA 311 (311)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999986
No 2
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-37 Score=270.95 Aligned_cols=210 Identities=17% Similarity=0.234 Sum_probs=172.3
Q ss_pred CCCCCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024864 2 SSMFDDPI---VEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTT 78 (261)
Q Consensus 2 k~~FdD~~---~eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~~~~~~~~~~~~~~~nvv~~L~~kl~~~s~~Fr~~~~~ 78 (261)
+|.|+|++ .+||.||..|++.|++|++.|+.+....+ ..++.+.....|+...|+.+|+.+|..||..|..
T Consensus 89 ~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n------~~~~~e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~ 162 (305)
T KOG0809|consen 89 RPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLN------QLSPSERLLRKNAQGYLALQLQTLSREFRGLQSK 162 (305)
T ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999987 49999999999999999999999886433 2356778889999999999999999999999999
Q ss_pred HHHHHHHHHhHhhhhhccccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccCCcCCCCCchhhhh
Q 024864 79 RTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEM 158 (261)
Q Consensus 79 r~~~lk~~~~Rr~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~ 158 (261)
|+++|+.++++-..|..+.. |+.. . |+ ..++ ++. -.+
T Consensus 163 YLK~l~~~ee~~~~~e~~~~---~~~~-------------------~-------~d----------d~d~--~~~--~~q 199 (305)
T KOG0809|consen 163 YLKRLRNREENSQEYEDSLD---NTVD-------------------L-------PD----------DEDF--SDR--TFQ 199 (305)
T ss_pred HHHHhhchhhcccchhhhcc---cccc-------------------C-------cc----------hhhh--hhh--hHH
Confidence 99999999998876654221 1000 0 00 0011 111 122
Q ss_pred hHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccC
Q 024864 159 SMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSN 238 (261)
Q Consensus 159 ~~q~q~~~~~~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~ 238 (261)
++|++..+.++.++.+|+++|.++.++|.||++||+||+.||.+||++|||||||||++..+|+.|.+||.||.++++++
T Consensus 200 e~ql~~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~ 279 (305)
T KOG0809|consen 200 EQQLMLFENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRN 279 (305)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcC
Confidence 44555567789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHc
Q 024864 239 RWLMIKIFAVIIFFLTVFMFFV 260 (261)
Q Consensus 239 r~~~~~i~~vl~i~~~~~~~~~ 260 (261)
++|+|+++++++||++++++++
T Consensus 280 ~k~~~i~~L~l~ii~llvllil 301 (305)
T KOG0809|consen 280 KKMKVILMLTLLIIALLVLLIL 301 (305)
T ss_pred CceEehHHHHHHHHHHHHHHHh
Confidence 9888877777777777666654
No 3
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.2e-24 Score=196.42 Aligned_cols=201 Identities=20% Similarity=0.256 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 024864 11 EIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRK 90 (261)
Q Consensus 11 eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~~~~~~~~~~~~~~~nvv~~L~~kl~~~s~~Fr~~~~~r~~~lk~~~~Rr 90 (261)
+++.++..|++.=..+...|..+..-...... .+.......++.+=...+..+|.+++..|..++..|.++.|.+-.|+
T Consensus 79 ~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~-~~~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rq 157 (297)
T KOG0810|consen 79 KLESLVDEIRRRARKIKTKLKALEKENEADET-QNRSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQ 157 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555543221111 01122233344444455559999999999999999999999988777
Q ss_pred hhhhccc-cCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccCCcCCCCCchhhhhhHHHh---hhh
Q 024864 91 QIFSANA-LRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQ---VVP 166 (261)
Q Consensus 91 ~~f~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~q~q---~~~ 166 (261)
.|..++ ..+.. ..+.+.. .+|+.. +++.-.+ ...
T Consensus 158 -l~i~~~~~~~de-------------------~ie~~ie--------~g~~~~--------------f~~~~i~~~~~~~ 195 (297)
T KOG0810|consen 158 -LFIVGGEETTDE-------------------EIEEMIE--------SGGSEV--------------FTQKAIQDRGQAK 195 (297)
T ss_pred -HhhhCCCcCChH-------------------HHHHHHH--------CCChHH--------------HHHHHHHHhhhhH
Confidence 333222 11100 0000100 001111 1111111 112
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHH
Q 024864 167 RQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIF 246 (261)
Q Consensus 167 ~~~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~ 246 (261)
....++++||.+|.+||++|.||++||.|||+||..||||||+||+||++|..||++|..++.+|.++++++|+..|+++
T Consensus 196 ~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~i 275 (297)
T KOG0810|consen 196 QTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIII 275 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeee
Confidence 34678999999999999999999999999999999999999999999999999999999999999997766654333333
Q ss_pred HHHHHHHH
Q 024864 247 AVIIFFLT 254 (261)
Q Consensus 247 ~vl~i~~~ 254 (261)
+|++|+++
T Consensus 276 i~~iii~~ 283 (297)
T KOG0810|consen 276 IILIIIIV 283 (297)
T ss_pred hHHHHHHH
Confidence 33333333
No 4
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.92 E-value=1.3e-23 Score=184.26 Aligned_cols=203 Identities=17% Similarity=0.227 Sum_probs=141.8
Q ss_pred CCCCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024864 3 SMFDDPI---VEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTR 79 (261)
Q Consensus 3 ~~FdD~~---~eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~~~~~~~~~~~~~~~nvv~~L~~kl~~~s~~Fr~~~~~r 79 (261)
|.|.|++ .+|++|+..|..+|++|.+.++..-....... .....-...|..-....+++.-+..||+.+..|
T Consensus 67 p~f~~k~~k~~ei~~L~~kv~~~l~~~~ki~~~~~~~~~s~~-----~~~kll~~~nt~~~~~~~iq~~~aq~r~~~~~~ 141 (283)
T COG5325 67 PSFSDKSEKEDEIDELSKKVNQDLQRCEKILKTKYKNLQSSF-----LQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQ 141 (283)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhcccchhhhHHHHHHHHHHHHHHHHHH
Confidence 8899977 48899999999999999999988654333221 112334455666777789999999999988777
Q ss_pred HHHHHHHHhHhhhhhccccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccCCcCCCCCchhhhhh
Q 024864 80 TENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMS 159 (261)
Q Consensus 80 ~~~lk~~~~Rr~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~ 159 (261)
.+.+ +. ... ...| ..+. .++.. .+ .++.+ .+.
T Consensus 142 ~k~l------~~---~~~-~~~~------------------------l~ee-------e~e~~-----~~-~~~sq-~~l 173 (283)
T COG5325 142 AKFL------RN---KNN-DQHP------------------------LEEE-------EDEES-----LS-SLGSQ-QTL 173 (283)
T ss_pred hHHH------Hh---ccc-ccCc------------------------hhhh-------hhhhh-----hh-ccchh-hHH
Confidence 7655 11 110 0001 0000 00000 00 01111 123
Q ss_pred HHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024864 160 MLQQVVP----RQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQI 235 (261)
Q Consensus 160 ~q~q~~~----~~~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~ 235 (261)
+|..+.. .+...+++|.++|.+|+++|.||++||+||+++|.+||+.|||||+|++++..|++.|.+||.||-+++
T Consensus 174 qq~~l~~ee~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hq 253 (283)
T COG5325 174 QQQGLSNEELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQ 253 (283)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHH
Confidence 3333332 234458999999999999999999999999999999999999999999999999999999999999877
Q ss_pred ccCchHHHHHHHHHHHHHHHHHH
Q 024864 236 SSNRWLMIKIFAVIIFFLTVFMF 258 (261)
Q Consensus 236 ~~~r~~~~~i~~vl~i~~~~~~~ 258 (261)
++.++|-.+++++|+|+++|+++
T Consensus 254 rrt~k~~~~~Llil~vv~lfv~l 276 (283)
T COG5325 254 RRTKKCRFYLLLILLVVLLFVSL 276 (283)
T ss_pred hhhccchhhHHHHHHHHHHHHHH
Confidence 77776666666666565555544
No 5
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=7.2e-23 Score=182.06 Aligned_cols=90 Identities=22% Similarity=0.322 Sum_probs=75.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCchH--HHH
Q 024864 167 RQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWL--MIK 244 (261)
Q Consensus 167 ~~~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~--~~~ 244 (261)
.+...+++|+++|++||+.|.||++||+||+.||++||++||.||+||++|..||+.|..+|+||.+|+++++++ +++
T Consensus 170 ~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll 249 (269)
T KOG0811|consen 170 YQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILL 249 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 367788999999999999999999999999999999999999999999999999999999999998866655544 334
Q ss_pred HHHHHHHHHHHH
Q 024864 245 IFAVIIFFLTVF 256 (261)
Q Consensus 245 i~~vl~i~~~~~ 256 (261)
++++++++++.+
T Consensus 250 ~v~~~v~lii~l 261 (269)
T KOG0811|consen 250 LVGGPVGLIIGL 261 (269)
T ss_pred HHHHHHHHHHHH
Confidence 444333333333
No 6
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.81 E-value=1.4e-18 Score=149.02 Aligned_cols=163 Identities=17% Similarity=0.248 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhccccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 024864 59 DDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQV 138 (261)
Q Consensus 59 ~~L~~kl~~~s~~Fr~~~~~r~~~lk~~~~Rr~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~ 138 (261)
...+.||.++-.+||.+...|-+..+.+..|. |... +| .... +..+.+.. ..+
T Consensus 103 e~~r~Kf~~~I~~yr~i~~~yree~~e~~rrQ--y~Ia----~P-----------~ATE---deve~aIn-------d~n 155 (280)
T COG5074 103 ENVRQKFLKLIQDYRIIDSNYREEEKEQARRQ--YIIA----QP-----------EATE---DEVEAAIN-------DVN 155 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--hhhc----CC-----------ccch---HHHHHHhc-------ccc
Confidence 55678999999999999999999888776444 3221 12 0000 00000100 011
Q ss_pred CcccccCCcCCCCCchhhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 024864 139 GNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESL 218 (261)
Q Consensus 139 g~~~~~~~~~d~~~~~~~~~~~q~q~~~~~~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~ 218 (261)
|.+.|..+.+..-.+ ... .....++++|+.+|.+||++|.||.+||+||++||.+|.++||-|+.|++++.
T Consensus 156 G~qvfsqalL~anr~----geA-----ktaL~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~ 226 (280)
T COG5074 156 GQQVFSQALLNANRR----GEA-----KTALAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQ 226 (280)
T ss_pred hHHHHHHHHHhcCcc----chH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHH
Confidence 222221111100000 000 12366889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH---HhccCchHHHHHHHHHHHHHHHHH
Q 024864 219 ANVEGARNALLRHLN---QISSNRWLMIKIFAVIIFFLTVFM 257 (261)
Q Consensus 219 ~~v~~g~~eL~ka~~---~~~~~r~~~~~i~~vl~i~~~~~~ 257 (261)
.||++|..++.+|.+ ..+++||.|+.|++++|+|+++|+
T Consensus 227 ~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~iii~viv~vv 268 (280)
T COG5074 227 ENVEQGVGHTDKAVKSARAARKKKIRCYGICFIIIIVIVVVV 268 (280)
T ss_pred hhHHHhhhhHHHHHHHHHHHHhcceehhhhHHHHHHHHHHHH
Confidence 999999999999977 345666666555555555544444
No 7
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.47 E-value=5.2e-13 Score=93.93 Aligned_cols=63 Identities=29% Similarity=0.435 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc
Q 024864 174 SRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQIS 236 (261)
Q Consensus 174 ~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~ 236 (261)
+|++++..|+.+|.+|++||.+|+.+|.+|+++||+|+.|++.|..++..|..+|.+|.+++|
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~k 63 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQK 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 689999999999999999999999999999999999999999999999999999999998754
No 8
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.38 E-value=2.3e-12 Score=89.04 Aligned_cols=59 Identities=42% Similarity=0.551 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024864 173 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRH 231 (261)
Q Consensus 173 ~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka 231 (261)
++|++++..|+.+|.+|+.||.+|+.+|.+||++||+||+|++.+..+++.|..+|.||
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999999999999999999999999999999999999999999999999875
No 9
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.28 E-value=3.2e-11 Score=84.71 Aligned_cols=63 Identities=32% Similarity=0.480 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024864 169 ENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRH 231 (261)
Q Consensus 169 ~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka 231 (261)
...+.+|+.++..|+..|.+++.||.+++.+|.+|+++||+|++|++.+..++..|...|.+|
T Consensus 4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 456789999999999999999999999999999999999999999999999999999999874
No 10
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=2.9e-07 Score=83.08 Aligned_cols=97 Identities=14% Similarity=0.192 Sum_probs=78.5
Q ss_pred HHHhhhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024864 160 MLQQVVPRQ----ENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQI 235 (261)
Q Consensus 160 ~q~q~~~~~----~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~ 235 (261)
.|.||++.+ ...+.+-.+++++|++.+.|+..|=.-|+..|.+|..-||.|-+++..|+.||+.|+++|+||.+..
T Consensus 211 e~~Q~~E~En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~ 290 (316)
T KOG3894|consen 211 EQVQLLETENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNN 290 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhc
Confidence 455555432 3445666789999999999999999999999999999999999999999999999999999999987
Q ss_pred ccCchHHHHHHHHHHHHHHHHH
Q 024864 236 SSNRWLMIKIFAVIIFFLTVFM 257 (261)
Q Consensus 236 ~~~r~~~~~i~~vl~i~~~~~~ 257 (261)
.+.|.+++. +++++-|+++|+
T Consensus 291 ~~~r~~~lf-~llvlsf~lLFl 311 (316)
T KOG3894|consen 291 GGLRVFLLF-FLLVLSFSLLFL 311 (316)
T ss_pred ccchhHHHH-HHHHHHHHHHHH
Confidence 777765444 444445555554
No 11
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=1.8e-05 Score=69.62 Aligned_cols=88 Identities=19% Similarity=0.311 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 024864 172 SQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIF 251 (261)
Q Consensus 172 ~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~vl~i 251 (261)
+++-.+....|+.+|.-+..+=..++.=+.+||.+||..++-++.+...+..+.+.|.+-.+..++++ |||++++++.+
T Consensus 147 ~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~-~~~~il~l~~~ 225 (235)
T KOG3202|consen 147 LQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCS-QWCAILLLVGL 225 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-chhHHHHHHHH
Confidence 34556678899999999999999999999999999999999999999999999999999888444444 44444444434
Q ss_pred HHHHHHHHc
Q 024864 252 FLTVFMFFV 260 (261)
Q Consensus 252 ~~~~~~~~~ 260 (261)
++++.+||+
T Consensus 226 ~~lvv~i~~ 234 (235)
T KOG3202|consen 226 LLLVVIIFI 234 (235)
T ss_pred HHHHHHHhc
Confidence 444444443
No 12
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.0072 Score=54.43 Aligned_cols=95 Identities=12% Similarity=0.110 Sum_probs=77.8
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCchH
Q 024864 162 QQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWL 241 (261)
Q Consensus 162 ~q~~~~~~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~ 241 (261)
+.+.++-...+.+-+.+|..+..-..+|+.|-++=+.+|..=.+.|++-..||+++..++.+|.+.=+++.+.. --.+
T Consensus 172 ~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~--~~ll 249 (269)
T KOG0811|consen 172 LDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKK--CILL 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch--hhhh
Confidence 33455566788999999999999999999999999999999999999999999999999999998876665544 5556
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024864 242 MIKIFAVIIFFLTVFMF 258 (261)
Q Consensus 242 ~~~i~~vl~i~~~~~~~ 258 (261)
++.++++++++++++.+
T Consensus 250 ~v~~~v~lii~l~i~~~ 266 (269)
T KOG0811|consen 250 LVGGPVGLIIGLIIAGI 266 (269)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 66666666666666554
No 13
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.76 E-value=0.0011 Score=49.66 Aligned_cols=55 Identities=15% Similarity=0.233 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024864 177 VALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRH 231 (261)
Q Consensus 177 ~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka 231 (261)
+.+.+++..+.|+..++.+=-..+.+-|+.|+.++...++-....+.-.+.=.+.
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l 57 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKL 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3578889999999999988888889999999999998777666555544443333
No 14
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.0028 Score=57.87 Aligned_cols=207 Identities=11% Similarity=0.092 Sum_probs=132.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024864 9 IVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHES 88 (261)
Q Consensus 9 ~~eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~~~~~~~~~~~~~~~nvv~~L~~kl~~~s~~Fr~~~~~r~~~lk~~~~ 88 (261)
..+|-..+..|+..+..+.+............ ............+-..|...+.+-...+.+..+.|-..++.+-.
T Consensus 84 ~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~~----~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~ 159 (297)
T KOG0810|consen 84 VDEIRRRARKIKTKLKALEKENEADETQNRSS----AGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQLF 159 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCCC----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999988644221 12233233333333566666656555555555666666666643
Q ss_pred Hhhh-hhccccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccCCcCCCCCchhhhhhHHHhhhhh
Q 024864 89 RKQI-FSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPR 167 (261)
Q Consensus 89 Rr~~-f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~q~q~~~~ 167 (261)
=... -.. +..-..+... +++. .|... +.. + .+ ...+.+--+..
T Consensus 160 i~~~~~~~-de~ie~~ie~-----------g~~~---~f~~~------------~i~----~--~~---~~~~~l~Eiq~ 203 (297)
T KOG0810|consen 160 IVGGEETT-DEEIEEMIES-----------GGSE---VFTQK------------AIQ----D--RG---QAKQTLAEIQE 203 (297)
T ss_pred hhCCCcCC-hHHHHHHHHC-----------CChH---HHHHH------------HHH----H--hh---hhHHHHHHHHH
Confidence 3322 111 1000000000 0000 01000 000 0 00 00111112233
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHH
Q 024864 168 QENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFA 247 (261)
Q Consensus 168 ~~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~ 247 (261)
--..+..-++.|..|+.--.++..|-..=+.||..=...|.+-..+|+.+..+|+.|. ++.++.++++||+|++++
T Consensus 204 Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv----~~qkkaRK~k~i~ii~~i 279 (297)
T KOG0810|consen 204 RHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAV----KYQKKARKWKIIIIIILI 279 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhceeeeehHHH
Confidence 4567889999999999999999999999999999999999999999999999999994 667777788998888888
Q ss_pred HHHHHHHHHHHH
Q 024864 248 VIIFFLTVFMFF 259 (261)
Q Consensus 248 vl~i~~~~~~~~ 259 (261)
|+++++++++++
T Consensus 280 ii~~v~v~~i~~ 291 (297)
T KOG0810|consen 280 IIIVVLVVVIVV 291 (297)
T ss_pred HHHHHHhhhhcc
Confidence 888888877764
No 15
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.0018 Score=50.58 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCchH-HHHHHHHHHHH
Q 024864 174 SRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWL-MIKIFAVIIFF 252 (261)
Q Consensus 174 ~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~-~~~i~~vl~i~ 252 (261)
|=++.+..+..-|.-|..+--++..=|..|..++|.+++..+.+..-....-.-+..-.+. +++++ |+.+++++++|
T Consensus 33 ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~--sg~~l~~~m~~f~lV~~ 110 (118)
T KOG3385|consen 33 ENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR--SGISLLCWMAVFSLVAF 110 (118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHH
Confidence 4455678888889999999999999999999999999999999999999998888655444 44444 34444445555
Q ss_pred HHHHH
Q 024864 253 LTVFM 257 (261)
Q Consensus 253 ~~~~~ 257 (261)
+++++
T Consensus 111 fi~~~ 115 (118)
T KOG3385|consen 111 FILWV 115 (118)
T ss_pred HHhhe
Confidence 54443
No 16
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.014 Score=45.76 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024864 177 VALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLN 233 (261)
Q Consensus 177 ~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~ 233 (261)
+.+++++..+.|+-+|+++==.=|.|-|+-|+.+++-.++ ++.|..+..+...
T Consensus 29 ~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~----L~~~as~F~~~A~ 81 (116)
T KOG0860|consen 29 DKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQ----LQAGASQFEKTAV 81 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3467778888899999999888899999999988865443 4444455554433
No 17
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=96.99 E-value=0.0064 Score=45.69 Aligned_cols=59 Identities=20% Similarity=0.145 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 024864 9 IVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGA 68 (261)
Q Consensus 9 ~~eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~~~~~~~~~~~~~~~nvv~~L~~kl~~~ 68 (261)
..+|+.||.+|+..+..|+..|+.|+...... .....+....+...|.+..|..+|+++
T Consensus 44 ~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~-~~~~~~~~~~ri~~nq~~~L~~kf~~~ 102 (103)
T PF00804_consen 44 KRELDELTDEIKQLFQKIKKRLKQLSKDNEDS-EGEEPSSNEVRIRKNQVQALSKKFQEV 102 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTT--SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999999999999999864311 111234455666666666666666554
No 18
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=96.76 E-value=0.041 Score=48.99 Aligned_cols=74 Identities=19% Similarity=0.376 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Q 024864 176 AVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFL 253 (261)
Q Consensus 176 ~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~vl~i~~ 253 (261)
.+++-.+.+++.+=... ++..+.+-..+|++.+..++.....+.....-|..... ++.+.|.++++++|+++|+
T Consensus 169 ~~em~~La~~LK~~s~~---~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~-~~~~~~~~~~i~~v~~~Fi 242 (251)
T PF09753_consen 169 TEEMLSLARQLKENSLA---FSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSS-KSWGCWTWLMIFVVIIVFI 242 (251)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHH
Confidence 33455555555444443 45688899999999999999999999999999977643 3333444444444444443
No 19
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.76 E-value=0.017 Score=50.55 Aligned_cols=92 Identities=17% Similarity=0.289 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HhccCc---hH
Q 024864 169 ENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLN----QISSNR---WL 241 (261)
Q Consensus 169 ~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~----~~~~~r---~~ 241 (261)
..+.+.-..+++.=.+.|.-+-.++.+|..|..+=.++|..=..||+....++..|......+.. ..++.| +.
T Consensus 170 ~geAktaL~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkk 249 (280)
T COG5074 170 RGEAKTALAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKK 249 (280)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhc
Confidence 34567778889999999999999999999999999999999999999999999999999888755 456544 45
Q ss_pred HHHHHHHHHHHHHHHHHHc
Q 024864 242 MIKIFAVIIFFLTVFMFFV 260 (261)
Q Consensus 242 ~~~i~~vl~i~~~~~~~~~ 260 (261)
-|.|+++|||++++.++||
T Consensus 250 ki~c~gI~~iii~viv~vv 268 (280)
T COG5074 250 KIRCYGICFIIIIVIVVVV 268 (280)
T ss_pred ceehhhhHHHHHHHHHHHH
Confidence 6888898888888888876
No 20
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=96.71 E-value=0.047 Score=44.31 Aligned_cols=83 Identities=16% Similarity=0.118 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 024864 10 VEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESR 89 (261)
Q Consensus 10 ~eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~~~~~~~~~~~~~~~nvv~~L~~kl~~~s~~Fr~~~~~r~~~lk~~~~R 89 (261)
..++.+...|+..+..+...|+.|......... .++....++..+.+..|..+|+++...|..++..|.+.+|.+-.|
T Consensus 44 ~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~--~~~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~R 121 (151)
T cd00179 44 QELESLVQEIKKLAKEIKGKLKELEESNEQNEA--LNGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQR 121 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488889999999999999999998875432211 113456778899999999999999999999999999999999988
Q ss_pred hhhhh
Q 024864 90 KQIFS 94 (261)
Q Consensus 90 r~~f~ 94 (261)
.-+..
T Consensus 122 q~~i~ 126 (151)
T cd00179 122 QLEIT 126 (151)
T ss_pred HHHHc
Confidence 85443
No 21
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=96.27 E-value=0.051 Score=41.98 Aligned_cols=71 Identities=14% Similarity=0.110 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024864 10 VEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENI 83 (261)
Q Consensus 10 ~eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~~~~~~~~~~~~~~~nvv~~L~~kl~~~s~~Fr~~~~~r~~~l 83 (261)
.+++.+...|......+...|+.|......... .+....+...+.+..|..+|++++..|++++..|.+.+
T Consensus 46 ~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~---~~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~ 116 (117)
T smart00503 46 EKLERLIDDIKRLAKEIRAKLKELEKENLENRA---SGSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYRERE 116 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc---cCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 467778888888888888888888765432211 12345678899999999999999999999998887654
No 22
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.68 Score=40.19 Aligned_cols=80 Identities=18% Similarity=0.275 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 024864 172 SQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIF 251 (261)
Q Consensus 172 ~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~vl~i 251 (261)
-..|..+-.+|.-...+++. .+-.=.+.|.+.|.|--.-+-++..|+.++.+-|.--.++.-+|||++..|++++++
T Consensus 133 st~rl~ds~Ria~ETEqIG~---~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~ 209 (220)
T KOG1666|consen 133 STDRLKDSQRIALETEQIGS---EILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVL 209 (220)
T ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666655555553 333344669999999999999999999999999988888889999988776665544
Q ss_pred HHH
Q 024864 252 FLT 254 (261)
Q Consensus 252 ~~~ 254 (261)
+++
T Consensus 210 ~il 212 (220)
T KOG1666|consen 210 AIL 212 (220)
T ss_pred HHH
Confidence 433
No 23
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.12 E-value=0.12 Score=46.41 Aligned_cols=91 Identities=15% Similarity=0.216 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---h-ccCchHHHH
Q 024864 169 ENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQ---I-SSNRWLMIK 244 (261)
Q Consensus 169 ~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~---~-~~~r~~~~~ 244 (261)
.+.+..-..-+.+-...|..|..=..+|+.+..+=|..|..==.-|+.-..|++.-..+++-|.+. . ...|+.-=|
T Consensus 180 ~ee~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~ 259 (283)
T COG5325 180 NEELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKC 259 (283)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccc
Confidence 444444444466677777777777778888888777777777777777777888877777777652 2 233344444
Q ss_pred HHHHHHHHHHHHHHH
Q 024864 245 IFAVIIFFLTVFMFF 259 (261)
Q Consensus 245 i~~vl~i~~~~~~~~ 259 (261)
-|.+|++++++.+++
T Consensus 260 ~~~~Llil~vv~lfv 274 (283)
T COG5325 260 RFYLLLILLVVLLFV 274 (283)
T ss_pred hhhHHHHHHHHHHHH
Confidence 444444444444433
No 24
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=1.1 Score=39.04 Aligned_cols=58 Identities=9% Similarity=0.167 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHH
Q 024864 200 VAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFM 257 (261)
Q Consensus 200 V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~vl~i~~~~~~ 257 (261)
.+-|+.++-.|-.-+.++....=.-+.=|+|-..+++++-.++-.++.+|++|++||.
T Consensus 172 l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis~C~llllfy~ 229 (231)
T KOG3208|consen 172 LHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVISVCTLLLLFYW 229 (231)
T ss_pred HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3568889999988888877776554444444444555555444455555666665554
No 25
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=92.97 E-value=3 Score=31.23 Aligned_cols=60 Identities=10% Similarity=0.241 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHH
Q 024864 199 MVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFF 259 (261)
Q Consensus 199 ~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~vl~i~~~~~~~~ 259 (261)
...+|-+.+....+-......-+..+.+=+.+..++...-|++++.. +.++++.++|||+
T Consensus 30 ~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~-~~~f~~~v~yI~~ 89 (92)
T PF03908_consen 30 TLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFA-FLFFLLVVLYILW 89 (92)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhh
Confidence 33456666666666666666677777777766666666666655533 3344445555553
No 26
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.75 E-value=8.3 Score=33.59 Aligned_cols=76 Identities=14% Similarity=0.140 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 024864 10 VEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESR 89 (261)
Q Consensus 10 ~eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~~~~~~~~~~~~~~~nvv~~L~~kl~~~s~~Fr~~~~~r~~~lk~~~~R 89 (261)
.++..+...|..+|..+...++.+....+...+ ...+....+ +..|...+..+-...++..+.+.++.+.-++|
T Consensus 29 ~e~~~v~~~i~~sI~~~~s~~~rl~~~~~~epp---~~rq~~rlr---~dQl~~d~~~l~~~l~~~~~R~~~r~~~~~er 102 (213)
T KOG3251|consen 29 QEVSAVENSIQRSIDQYASRCQRLDVLVSKEPP---KSRQAARLR---VDQLLEDVEHLQTSLRTSMNRNNRREQQARER 102 (213)
T ss_pred cchHHHHHHHHHhHHHHHHHHHHHHhHhhcCCC---CcHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 366777777888888888888888776554322 133344443 78888888888888888877777777766665
Q ss_pred hh
Q 024864 90 KQ 91 (261)
Q Consensus 90 r~ 91 (261)
..
T Consensus 103 ~~ 104 (213)
T KOG3251|consen 103 VE 104 (213)
T ss_pred HH
Confidence 54
No 27
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=91.46 E-value=5.6 Score=35.33 Aligned_cols=82 Identities=12% Similarity=0.232 Sum_probs=47.9
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HhccCchHHHHHHHH
Q 024864 173 QSRAVALH-NVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLN---QISSNRWLMIKIFAV 248 (261)
Q Consensus 173 ~~R~~~i~-~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~---~~~~~r~~~~~i~~v 248 (261)
-.+++.++ .|...|..|..-.+.=+... +..|..=..-++.+...++.-..-|..+.. ...+++|.||.++++
T Consensus 158 l~~~~~~QE~L~~em~~La~~LK~~s~~~---~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~~~i 234 (251)
T PF09753_consen 158 LQHHRNLQEDLTEEMLSLARQLKENSLAF---SQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTWLMI 234 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 34555554 67777777777777665554 344444444566777777777777766654 455666674444444
Q ss_pred HHHHHHHHHH
Q 024864 249 IIFFLTVFMF 258 (261)
Q Consensus 249 l~i~~~~~~~ 258 (261)
++ ++++||+
T Consensus 235 ~~-v~~~Fi~ 243 (251)
T PF09753_consen 235 FV-VIIVFIM 243 (251)
T ss_pred HH-HHHHHHH
Confidence 44 4444443
No 28
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=91.36 E-value=6.1 Score=34.66 Aligned_cols=55 Identities=5% Similarity=0.070 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024864 181 NVESTITELGGIFTHLAT----MVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQI 235 (261)
Q Consensus 181 ~ie~~i~el~~if~~la~----~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~ 235 (261)
+|..++.-|..-|+..+. -+.+-.+.+.+-+.-++....-..-...-++++.++.
T Consensus 155 eLaesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk 213 (244)
T KOG2678|consen 155 ELAESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSK 213 (244)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhh
Confidence 344455555544444332 3333444444444444444444444444455544443
No 29
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.88 E-value=1.3 Score=40.02 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 024864 174 SRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLR 230 (261)
Q Consensus 174 ~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~k 230 (261)
+-++.+.+|-..+..|..|=.+|++=|..|.+.||+|+++++.....|+..++-+.+
T Consensus 215 eiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 215 EIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 566778888889999999999999999999999999999999999999999887754
No 30
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.95 E-value=2 Score=33.86 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024864 214 MDESLANVEGARNALLRH 231 (261)
Q Consensus 214 v~~a~~~v~~g~~eL~ka 231 (261)
++.+....+.+...|++.
T Consensus 69 L~~~as~F~~~A~klkrk 86 (116)
T KOG0860|consen 69 LQAGASQFEKTAVKLKRK 86 (116)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555666543
No 31
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=89.61 E-value=4.6 Score=42.02 Aligned_cols=70 Identities=11% Similarity=0.296 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Q 024864 178 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFL 253 (261)
Q Consensus 178 ~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~vl~i~~ 253 (261)
.+..+.+.+..+..-+.+++..+-.+ +...+..-..++..++........++..+ ||.+.++++++++++
T Consensus 358 ~v~~ik~~l~~~~~~i~~~a~~i~~~--~~~~~s~~~~~~~~~~~~~~~~~~~y~~y----R~~~~lil~~~llLI 427 (806)
T PF05478_consen 358 VVPPIKRDLDSIGKQIRSQAKQIPNQ--IDSNISDILNNTERSSRSFEDEYEKYDSY----RWIVGLILCCVLLLI 427 (806)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 44556666666666666777666655 55556666666666777766666666665 776655554443333
No 32
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.28 E-value=4.6 Score=36.84 Aligned_cols=95 Identities=13% Similarity=0.112 Sum_probs=73.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---H-hccCchH
Q 024864 166 PRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLN---Q-ISSNRWL 241 (261)
Q Consensus 166 ~~~~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~---~-~~~~r~~ 241 (261)
+.+...++.-++.+++=|+.|..|.+=..||+++..+=+.||-.==.-|+.---||++-...+..|.+ + -+..|+-
T Consensus 200 e~ql~~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~ 279 (305)
T KOG0809|consen 200 EQQLMLFENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRN 279 (305)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcC
Confidence 44556667777888999999999999999999999999999876666788888999999999999976 2 2344555
Q ss_pred HHHHHHHHHHHHHHHHHHc
Q 024864 242 MIKIFAVIIFFLTVFMFFV 260 (261)
Q Consensus 242 ~~~i~~vl~i~~~~~~~~~ 260 (261)
--+.+++++++++||++++
T Consensus 280 ~k~~~i~~L~l~ii~llvl 298 (305)
T KOG0809|consen 280 KKMKVILMLTLLIIALLVL 298 (305)
T ss_pred CceEehHHHHHHHHHHHHH
Confidence 5566666666666666654
No 33
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=88.02 E-value=0.81 Score=31.78 Aligned_cols=10 Identities=0% Similarity=0.514 Sum_probs=3.8
Q ss_pred HhccCchHHH
Q 024864 234 QISSNRWLMI 243 (261)
Q Consensus 234 ~~~~~r~~~~ 243 (261)
+.++.+++++
T Consensus 34 ~~~~~~~i~~ 43 (59)
T PF09889_consen 34 RMRKTQYIFF 43 (59)
T ss_pred HHHHHHHHHH
Confidence 3333344333
No 34
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=86.13 E-value=12 Score=27.95 Aligned_cols=68 Identities=18% Similarity=0.183 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024864 10 VEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKA 85 (261)
Q Consensus 10 ~eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~~~~~~~~~~~~~~~nvv~~L~~kl~~~s~~Fr~~~~~r~~~lk~ 85 (261)
..|..+...+...+..+...|..|.... .......+......-|...+..+...|.+++..+.+..++
T Consensus 33 ~~i~~~~~~~~~l~k~~~~~l~~l~~~~--------~~~~~~~~~k~~~~KL~~df~~~l~~fq~~q~~~~~~~k~ 100 (102)
T PF14523_consen 33 EKIHQLIQKTNQLIKEISELLKKLNSLS--------SDRSNDRQQKLQREKLSRDFKEALQEFQKAQRRYAEKEKQ 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3778888888888888888888877651 0233456666777888888888888888888877776553
No 35
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=85.70 E-value=12 Score=27.50 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 024864 167 RQENYSQSRAVALHNVESTITELG 190 (261)
Q Consensus 167 ~~~~~~~~R~~~i~~ie~~i~el~ 190 (261)
++...+-+|.+.+..|+..-.+|.
T Consensus 21 ~Ni~~ll~Rge~L~~L~~kt~~L~ 44 (89)
T PF00957_consen 21 ENIDKLLERGEKLEELEDKTEELS 44 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHHHH
Confidence 344445555555555555444433
No 36
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=85.01 E-value=1.6 Score=30.34 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=21.4
Q ss_pred HHHHhccCchHHHHHHHHHHHHHHHHHHH
Q 024864 231 HLNQISSNRWLMIKIFAVIIFFLTVFMFF 259 (261)
Q Consensus 231 a~~~~~~~r~~~~~i~~vl~i~~~~~~~~ 259 (261)
+.+++++-++.-.++++++++|+++++++
T Consensus 28 ~~k~qk~~~~~~~i~~~~~i~~l~v~~~~ 56 (59)
T PF09889_consen 28 YRKRQKRMRKTQYIFFGIFILFLAVWIFM 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777778888888888877777654
No 37
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=84.62 E-value=25 Score=33.34 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-----CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024864 11 EIQELTALIKDDITALNMALSDLQTLQNLEIVE-----GNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKA 85 (261)
Q Consensus 11 eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~~~-----~~~~~~~~~~~~nvv~~L~~kl~~~s~~Fr~~~~~r~~~lk~ 85 (261)
..-.+...++..|-++..+|+.-+........+ .+.-+++..+-+++..--..|-..+.....+.++.|-+++|.
T Consensus 37 k~~~~~D~lr~kilk~teqikie~~srd~n~~sylkl~~~ADk~Q~~rIkq~FEkkNqksahtiaqlqkkL~~y~~rLke 116 (455)
T KOG3850|consen 37 KLKEIKDSLRQKILKRTEQIKIEQSSRDGNVASYLKLVNNADKQQVARIKQVFEKKNQKSAHTIAQLQKKLEQYHRRLKE 116 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHhhccchhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555666666666555422111111 133567888888888888899999999999999999999998
Q ss_pred HH
Q 024864 86 HE 87 (261)
Q Consensus 86 ~~ 87 (261)
-+
T Consensus 117 ie 118 (455)
T KOG3850|consen 117 IE 118 (455)
T ss_pred Hh
Confidence 76
No 38
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.39 E-value=66 Score=29.44 Aligned_cols=93 Identities=10% Similarity=0.131 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HhccCchHHH
Q 024864 168 QENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLN----QISSNRWLMI 243 (261)
Q Consensus 168 ~~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~----~~~~~r~~~~ 243 (261)
+...+.+-.+-+++=..++.-+..=..+|+.+..+=..||--=++-+.....||..+.-.+.-|.. +--+=..--|
T Consensus 211 Qm~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRw 290 (311)
T KOG0812|consen 211 QMALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRW 290 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchH
Confidence 455666667778888888999988899999999999999999999999999999999888887765 3334445568
Q ss_pred HHHHHHHHHHHHHHHHc
Q 024864 244 KIFAVIIFFLTVFMFFV 260 (261)
Q Consensus 244 ~i~~vl~i~~~~~~~~~ 260 (261)
+++=|..|+++||+||+
T Consensus 291 LmvkiF~i~ivFflvfv 307 (311)
T KOG0812|consen 291 LMVKIFGILIVFFLVFV 307 (311)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888899999999986
No 39
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.48 E-value=58 Score=28.92 Aligned_cols=94 Identities=9% Similarity=0.190 Sum_probs=68.3
Q ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcc
Q 024864 158 MSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISS 237 (261)
Q Consensus 158 ~~~q~q~~~~~~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~ 237 (261)
.+.|+|++.++++.+..-+..|..+...-..+|.=-.+=+.|+.+.+.-+|+++.-+......+..-.. ++.. .+.
T Consensus 140 ~~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~---~~s~-~~~ 215 (235)
T KOG3202|consen 140 VQLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR---MASQ-CSQ 215 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhcc-ccc
Confidence 355677788888888899999999988888888766777889999999999999999999988887766 3322 334
Q ss_pred CchHHHHHHHHHHHHHHHH
Q 024864 238 NRWLMIKIFAVIIFFLTVF 256 (261)
Q Consensus 238 ~r~~~~~i~~vl~i~~~~~ 256 (261)
-..+++++. ++++.+++|
T Consensus 216 ~~~il~l~~-~~~lvv~i~ 233 (235)
T KOG3202|consen 216 WCAILLLVG-LLLLVVIIF 233 (235)
T ss_pred hhHHHHHHH-HHHHHHHHh
Confidence 444444433 333344444
No 40
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=74.39 E-value=61 Score=28.57 Aligned_cols=88 Identities=11% Similarity=0.163 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----------------HHHHHHHHHHHHHHHHHHH
Q 024864 170 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNM----------------DESLANVEGARNALLRHLN 233 (261)
Q Consensus 170 ~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv----------------~~a~~~v~~g~~eL~ka~~ 233 (261)
+....|+++.++|-.++.+=..=|.+-+.-+ |-.-++-|-.++ .......++..+++.++..
T Consensus 64 ~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~--~~dF~~~Lq~~Lk~V~tde~k~~~~~ei~k~r~e~~~ml~evK~~~E 141 (230)
T PF03904_consen 64 EKQDIREKNLKEIKSSLEETTKDFIDKTEKV--HNDFQDILQDELKDVDTDELKNIAQNEIKKVREENKSMLQEVKQSHE 141 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677788888888888666676665544 333333332222 2222333333344434433
Q ss_pred -HhccCchHHHHHHHHHHHHHHHHHHH
Q 024864 234 -QISSNRWLMIKIFAVIIFFLTVFMFF 259 (261)
Q Consensus 234 -~~~~~r~~~~~i~~vl~i~~~~~~~~ 259 (261)
+++.-++++--+.++++||++|.+|+
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvm 168 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVM 168 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44555555555555555555554444
No 41
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.75 E-value=11 Score=32.61 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCch
Q 024864 176 AVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRW 240 (261)
Q Consensus 176 ~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~ 240 (261)
...+.++...|.|+..++-+==.-|.+-||.|+-.=+ .++|+..-....++..++.+++.|
T Consensus 124 id~lskvkaqv~evk~vM~eNIekvldRGekiELLVd----KTenl~~~s~~fr~q~r~~~r~mw 184 (217)
T KOG0859|consen 124 ISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVD----KTENLRSKSFDFRTQGRKLRRKMW 184 (217)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeec----hhhhhhhhhHHHHHHHHHHHHHHH
Confidence 3456777788888888777666666777765544333 334444445555555554444444
No 42
>PF14992 TMCO5: TMCO5 family
Probab=73.40 E-value=73 Score=29.02 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 024864 171 YSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNAL 228 (261)
Q Consensus 171 ~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL 228 (261)
....-..++.+++.+..+++++=.|=+.-++.=.+.+.+|+.-.|...-+.+-+..+.
T Consensus 124 ~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lLe~el~k~q~ 181 (280)
T PF14992_consen 124 SCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLLEKELSKYQM 181 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456677888888888888888888888888777788999987777666655444443
No 43
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=73.13 E-value=30 Score=24.49 Aligned_cols=21 Identities=19% Similarity=0.517 Sum_probs=13.1
Q ss_pred cCchHHHHHHHHHHHHHHHHH
Q 024864 237 SNRWLMIKIFAVIIFFLTVFM 257 (261)
Q Consensus 237 ~~r~~~~~i~~vl~i~~~~~~ 257 (261)
..+|++-.+++.++.+++.|+
T Consensus 49 n~kW~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 49 NTKWIWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777766666666555544
No 44
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=68.33 E-value=6.5 Score=29.12 Aligned_cols=17 Identities=24% Similarity=0.719 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024864 243 IKIFAVIIFFLTVFMFF 259 (261)
Q Consensus 243 ~~i~~vl~i~~~~~~~~ 259 (261)
..|+++|+|+++++++|
T Consensus 28 MtILivLVIIiLlImlf 44 (85)
T PF10717_consen 28 MTILIVLVIIILLIMLF 44 (85)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 45
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=68.02 E-value=36 Score=23.33 Aligned_cols=55 Identities=20% Similarity=0.154 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024864 179 LHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLN 233 (261)
Q Consensus 179 i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~ 233 (261)
+..-.+.+.|.-++=.+...-...|++.|.++...+.+...++..+..-|.+-.+
T Consensus 10 L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~r 64 (66)
T PF12352_consen 10 LQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISR 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHc
Confidence 4444444555555555667777899999999999999999999999988866443
No 46
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=67.16 E-value=32 Score=22.46 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024864 181 NVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQI 235 (261)
Q Consensus 181 ~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~ 235 (261)
+-...+..|.....++..|..+=+.+|..=..-++....++..+...+.+|.++.
T Consensus 3 e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l 57 (60)
T cd00193 3 ERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRL 57 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888888888888877778888888888888887776653
No 47
>PHA02844 putative transmembrane protein; Provisional
Probab=65.85 E-value=8.5 Score=27.85 Aligned_cols=12 Identities=8% Similarity=-0.031 Sum_probs=5.5
Q ss_pred cCchHHHHHHHH
Q 024864 237 SNRWLMIKIFAV 248 (261)
Q Consensus 237 ~~r~~~~~i~~v 248 (261)
+..|.+++++++
T Consensus 45 ~~~~~~~ii~i~ 56 (75)
T PHA02844 45 SSSTKIWILTII 56 (75)
T ss_pred ChhHHHHHHHHH
Confidence 445555444433
No 48
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=65.11 E-value=8.2 Score=28.71 Aligned_cols=11 Identities=9% Similarity=0.706 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 024864 249 IIFFLTVFMFF 259 (261)
Q Consensus 249 l~i~~~~~~~~ 259 (261)
++|++++|+++
T Consensus 45 VfVii~lFi~l 55 (84)
T PF06143_consen 45 VFVIIVLFILL 55 (84)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 49
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.68 E-value=55 Score=29.70 Aligned_cols=43 Identities=23% Similarity=0.263 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 024864 187 TELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALL 229 (261)
Q Consensus 187 ~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ 229 (261)
.|-...=..-..|..+||+.|++|+.|++........|.+.|.
T Consensus 89 ~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~ 131 (273)
T KOG3065|consen 89 EESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLT 131 (273)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHH
Confidence 3334444456678889999999999999999999988888775
No 50
>PHA03164 hypothetical protein; Provisional
Probab=64.46 E-value=5.2 Score=29.12 Aligned_cols=7 Identities=14% Similarity=0.766 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 024864 251 FFLTVFM 257 (261)
Q Consensus 251 i~~~~~~ 257 (261)
|++++|+
T Consensus 71 ILfiifv 77 (88)
T PHA03164 71 ILFIIFV 77 (88)
T ss_pred HHHHHHH
Confidence 3333333
No 51
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=63.89 E-value=61 Score=24.44 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024864 10 VEIQELTALIKDDITALNMALSDLQTLQNLEI 41 (261)
Q Consensus 10 ~eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~ 41 (261)
.+.-.+...|+..|..++..+..|+.......
T Consensus 4 ~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l 35 (117)
T smart00503 4 DEFFEKVEEIRANIQKISQNVAELQKLHEELL 35 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667888999999999999999998766543
No 52
>PHA02819 hypothetical protein; Provisional
Probab=59.22 E-value=13 Score=26.57 Aligned_cols=10 Identities=20% Similarity=-0.177 Sum_probs=4.3
Q ss_pred cCchHHHHHH
Q 024864 237 SNRWLMIKIF 246 (261)
Q Consensus 237 ~~r~~~~~i~ 246 (261)
+..|.++++.
T Consensus 43 ~~~~~~~ii~ 52 (71)
T PHA02819 43 SFLRYYLIIG 52 (71)
T ss_pred ChhHHHHHHH
Confidence 4445444433
No 53
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=59.21 E-value=71 Score=23.66 Aligned_cols=67 Identities=18% Similarity=0.275 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHH--------HHHHhccCchHHHHHHHH
Q 024864 182 VESTITELGGIFTHLATMVAQQG-ELAIRIDDNMDESLANVEGARNALLR--------HLNQISSNRWLMIKIFAV 248 (261)
Q Consensus 182 ie~~i~el~~if~~la~~V~~Qg-e~idrId~nv~~a~~~v~~g~~eL~k--------a~~~~~~~r~~~~~i~~v 248 (261)
|+.-+.++..+....+....+.. +.-++++..++.+...+..+...+.. +..+.+.+.|.-+.|.+.
T Consensus 7 l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P~~svgiAag 82 (94)
T PF05957_consen 7 LEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENPWQSVGIAAG 82 (94)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHH
Confidence 34444444555555544444332 33456666666666666655544432 234788899887654443
No 54
>PHA03054 IMV membrane protein; Provisional
Probab=59.07 E-value=14 Score=26.55 Aligned_cols=10 Identities=20% Similarity=0.481 Sum_probs=4.3
Q ss_pred cCchHHHHHH
Q 024864 237 SNRWLMIKIF 246 (261)
Q Consensus 237 ~~r~~~~~i~ 246 (261)
+..|.++++.
T Consensus 45 ~~~~~~~ii~ 54 (72)
T PHA03054 45 CWGWYWLIII 54 (72)
T ss_pred CchHHHHHHH
Confidence 4445444433
No 55
>PHA02975 hypothetical protein; Provisional
Probab=57.64 E-value=15 Score=26.13 Aligned_cols=12 Identities=25% Similarity=0.387 Sum_probs=5.3
Q ss_pred ccCchHHHHHHH
Q 024864 236 SSNRWLMIKIFA 247 (261)
Q Consensus 236 ~~~r~~~~~i~~ 247 (261)
++..|.++++++
T Consensus 40 ~~~~~~~~ii~i 51 (69)
T PHA02975 40 KSSLSIILIIFI 51 (69)
T ss_pred CCchHHHHHHHH
Confidence 444454444443
No 56
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=56.89 E-value=24 Score=23.39 Aligned_cols=17 Identities=12% Similarity=0.138 Sum_probs=10.5
Q ss_pred HHHHHHHhccCchHHHH
Q 024864 228 LLRHLNQISSNRWLMIK 244 (261)
Q Consensus 228 L~ka~~~~~~~r~~~~~ 244 (261)
.+.+.++-++||.-++.
T Consensus 5 ~~~~~~~f~~nk~a~~g 21 (56)
T PF12911_consen 5 WKDAWRRFRRNKLAVIG 21 (56)
T ss_pred HHHHHHHHHhCchHHHH
Confidence 45666766777765443
No 57
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=56.74 E-value=82 Score=30.11 Aligned_cols=12 Identities=50% Similarity=0.722 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHH
Q 024864 182 VESTITELGGIF 193 (261)
Q Consensus 182 ie~~i~el~~if 193 (261)
++..+.+|.++|
T Consensus 123 v~~~l~~Le~~~ 134 (406)
T PF04906_consen 123 VEQHLTRLEEIF 134 (406)
T ss_pred HHHHHHHHHHHh
Confidence 455566666666
No 58
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=54.17 E-value=75 Score=22.39 Aligned_cols=48 Identities=10% Similarity=0.121 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 024864 178 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGAR 225 (261)
Q Consensus 178 ~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~ 225 (261)
.|..||..+.-.-....+|...|..|...|++....+..-...+....
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456667777777777777777889999999999888877777666543
No 59
>PHA02650 hypothetical protein; Provisional
Probab=53.87 E-value=18 Score=26.51 Aligned_cols=8 Identities=0% Similarity=-0.621 Sum_probs=3.2
Q ss_pred cCchHHHH
Q 024864 237 SNRWLMIK 244 (261)
Q Consensus 237 ~~r~~~~~ 244 (261)
+..|.+++
T Consensus 46 ~~~~~~~i 53 (81)
T PHA02650 46 WFNGQNFI 53 (81)
T ss_pred CchHHHHH
Confidence 34444333
No 60
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=52.43 E-value=1.7e+02 Score=25.91 Aligned_cols=6 Identities=17% Similarity=-0.252 Sum_probs=2.6
Q ss_pred HhccCc
Q 024864 234 QISSNR 239 (261)
Q Consensus 234 ~~~~~r 239 (261)
+-++.+
T Consensus 209 y~ksk~ 214 (244)
T KOG2678|consen 209 YDKSKL 214 (244)
T ss_pred HHHhhh
Confidence 444443
No 61
>PHA03240 envelope glycoprotein M; Provisional
Probab=52.23 E-value=13 Score=32.50 Aligned_cols=7 Identities=43% Similarity=1.293 Sum_probs=2.8
Q ss_pred hHHHHHH
Q 024864 240 WLMIKIF 246 (261)
Q Consensus 240 ~~~~~i~ 246 (261)
|++++|+
T Consensus 215 WIiilII 221 (258)
T PHA03240 215 WIFIAII 221 (258)
T ss_pred HHHHHHH
Confidence 4444333
No 62
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=51.36 E-value=64 Score=23.43 Aligned_cols=64 Identities=16% Similarity=0.257 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024864 12 IQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDV 75 (261)
Q Consensus 12 Ie~LT~~Ik~~i~~~~~~i~~lq~~~~~~~~~~~~~~~~~~~~~nvv~~L~~kl~~~s~~Fr~~ 75 (261)
.-.-+..|...|..+...+..|+...................-..+...+...+..+-..-+.+
T Consensus 5 f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l 68 (103)
T PF00804_consen 5 FFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQL 68 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777778888888887776654432211011233333344444444444444444443
No 63
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.79 E-value=60 Score=28.14 Aligned_cols=17 Identities=0% Similarity=0.100 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024864 67 GATKELQDVLTTRTENI 83 (261)
Q Consensus 67 ~~s~~Fr~~~~~r~~~l 83 (261)
+.+..|-.+-.+.++++
T Consensus 20 ~~~gNf~sva~qiL~kl 36 (217)
T KOG0859|consen 20 EFSGNFSSIAAQILQKL 36 (217)
T ss_pred eccCCHHHHHHHHHHhC
Confidence 34555555655555544
No 64
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=47.75 E-value=86 Score=25.09 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024864 172 SQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDN 213 (261)
Q Consensus 172 ~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~n 213 (261)
.+.-.+++..+..++..++.-+..+..+|..=+.-|++||+|
T Consensus 84 ~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~~ 125 (126)
T PF07889_consen 84 SKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEEK 125 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344445566666666666666666777777667777777765
No 65
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=47.37 E-value=9.6 Score=31.47 Aligned_cols=21 Identities=14% Similarity=0.271 Sum_probs=10.2
Q ss_pred HHHHHHHHHHH-HhccCchHHH
Q 024864 223 GARNALLRHLN-QISSNRWLMI 243 (261)
Q Consensus 223 ~g~~eL~ka~~-~~~~~r~~~~ 243 (261)
-|..-|.|-.+ ..++.|.|-+
T Consensus 114 PGyDsLLKkKEae~kr~K~Cki 135 (159)
T PF06789_consen 114 PGYDSLLKKKEAELKRSKVCKI 135 (159)
T ss_pred CchHHHHHHHHHHHHHHHHHHH
Confidence 46666665433 3344444433
No 66
>PHA03164 hypothetical protein; Provisional
Probab=46.92 E-value=29 Score=25.33 Aligned_cols=20 Identities=15% Similarity=0.472 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHc
Q 024864 241 LMIKIFAVIIFFLTVFMFFV 260 (261)
Q Consensus 241 ~~~~i~~vl~i~~~~~~~~~ 260 (261)
..++++.+|+|-.++|++|+
T Consensus 58 ftFlvLtgLaIamILfiifv 77 (88)
T PHA03164 58 FTFLVLTGLAIAMILFIIFV 77 (88)
T ss_pred eehHHHHHHHHHHHHHHHHH
Confidence 34445555556666666554
No 67
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=46.62 E-value=2.7e+02 Score=26.67 Aligned_cols=68 Identities=16% Similarity=0.184 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHH----HhccCchHHHHHHHHHH
Q 024864 177 VALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGAR-NALLRHLN----QISSNRWLMIKIFAVII 250 (261)
Q Consensus 177 ~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~-~eL~ka~~----~~~~~r~~~~~i~~vl~ 250 (261)
.||.+|.+.+...-+ .|.++=-|-.-.|.+++|.....|.+=. .+++++.+ .....|.++.+++=+|+
T Consensus 276 ~Ei~~LKqeLa~~EE------K~~Yqs~eRaRdi~E~~Es~qtRisklE~~~~Qq~~q~e~~~n~~~r~~l~k~inllL 348 (395)
T PF10267_consen 276 NEIYNLKQELASMEE------KMAYQSYERARDIWEVMESCQTRISKLEQQQQQQVVQLEGTENSRARALLGKLINLLL 348 (395)
T ss_pred HHHHHHHHHHHhHHH------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHH
Confidence 355555544333221 3555666777788888888888877665 44555543 22233455555543333
No 68
>PHA02692 hypothetical protein; Provisional
Probab=45.94 E-value=30 Score=24.76 Aligned_cols=11 Identities=9% Similarity=0.404 Sum_probs=4.5
Q ss_pred ccCchHHHHHH
Q 024864 236 SSNRWLMIKIF 246 (261)
Q Consensus 236 ~~~r~~~~~i~ 246 (261)
++..|..+++.
T Consensus 41 ~~~~~~~~ii~ 51 (70)
T PHA02692 41 KGVPWTTVFLI 51 (70)
T ss_pred CCcchHHHHHH
Confidence 34444444333
No 69
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=45.08 E-value=1.5e+02 Score=23.37 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024864 11 EIQELTALIKDDITALNMALSDLQTLQNLEI 41 (261)
Q Consensus 11 eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~ 41 (261)
++-.+...|+..|..++..+..|+.......
T Consensus 3 ~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~ 33 (151)
T cd00179 3 EFFEEVEEIRGNIDKISEDVEELQKLHSQLL 33 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788899999999999999988765443
No 70
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=44.68 E-value=1e+02 Score=21.20 Aligned_cols=43 Identities=12% Similarity=0.237 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 024864 179 LHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANV 221 (261)
Q Consensus 179 i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v 221 (261)
++.++.-+..|-..|.....--...++.++|+|.++|.-..++
T Consensus 3 ~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~m 45 (57)
T PF02346_consen 3 IKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYM 45 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888999999999999988765443
No 71
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=43.78 E-value=39 Score=21.20 Aligned_cols=9 Identities=44% Similarity=0.851 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 024864 246 FAVIIFFLT 254 (261)
Q Consensus 246 ~~vl~i~~~ 254 (261)
|+|+|.+++
T Consensus 19 flv~imlii 27 (43)
T PF11395_consen 19 FLVIIMLII 27 (43)
T ss_pred HHHHHHHHH
Confidence 333333333
No 72
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=43.27 E-value=71 Score=23.80 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=7.9
Q ss_pred cCchHHHHHHHHHHHHHHH
Q 024864 237 SNRWLMIKIFAVIIFFLTV 255 (261)
Q Consensus 237 ~~r~~~~~i~~vl~i~~~~ 255 (261)
-||+-+++-.+++++++++
T Consensus 65 ENrK~~~ls~~l~~v~~Lv 83 (85)
T PF15188_consen 65 ENRKSMLLSVALFFVCFLV 83 (85)
T ss_pred hhhhhHHHHHHHHHHHHHH
Confidence 4444444333333344443
No 73
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=42.37 E-value=30 Score=24.98 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=9.6
Q ss_pred hccCchHHHHHHHHHHHHHHH
Q 024864 235 ISSNRWLMIKIFAVIIFFLTV 255 (261)
Q Consensus 235 ~~~~r~~~~~i~~vl~i~~~~ 255 (261)
++.+.|.-++++++.++++++
T Consensus 40 ~~~~~~~~~~~~ii~ii~v~i 60 (72)
T PF12575_consen 40 NKNNKNFNWIILIISIIFVLI 60 (72)
T ss_pred cCCCCcchHHHHHHHHHHHHH
Confidence 334444445555554444433
No 74
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=42.21 E-value=1.4e+02 Score=22.18 Aligned_cols=61 Identities=11% Similarity=0.222 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---cCCCchhHHHHHHHHHHHHHHHHHHH
Q 024864 8 PIVEIQELTALIKDDITALNMALSDLQTLQNLEIV---EGNYSQDRVVHSTTVCDDLKSKLMGA 68 (261)
Q Consensus 8 ~~~eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~~---~~~~~~~~~~~~~nvv~~L~~kl~~~ 68 (261)
.+.++..++.+++..+..+...|..|+....-... ..+-+..+...+...|..++.++.++
T Consensus 33 ~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~~~~i~~~ 96 (97)
T PF09177_consen 33 SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRRQFVSAIRNQIKQM 96 (97)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 34688899999999999999999999886643210 01123456666666777776666543
No 75
>PF00482 T2SF: Type II secretion system (T2SS), protein F; InterPro: IPR018076 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) [], have been found to be evolutionary related. These are proteins of about 400 amino acids that are highly hydrophobic and which are thought to be integral protein of the inner membrane. Proteins with this domain form a platform for the type II secretion machinery, as well as the type IV pili and the archaeal flagellae [].; PDB: 2VMA_A 3C1Q_A 2VMB_B 2WHN_B.
Probab=42.18 E-value=50 Score=24.34 Aligned_cols=8 Identities=0% Similarity=0.119 Sum_probs=2.6
Q ss_pred HHHHHHHH
Q 024864 194 THLATMVA 201 (261)
Q Consensus 194 ~~la~~V~ 201 (261)
.++...+.
T Consensus 60 ~~~~~~~~ 67 (124)
T PF00482_consen 60 PDFVASLI 67 (124)
T ss_dssp -HHHHHHH
T ss_pred chHHHHHH
Confidence 33333333
No 76
>PF15102 TMEM154: TMEM154 protein family
Probab=41.73 E-value=12 Score=30.78 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHc
Q 024864 241 LMIKIFAVIIFFLTVFMFFV 260 (261)
Q Consensus 241 ~~~~i~~vl~i~~~~~~~~~ 260 (261)
++++|-+||++++++++|++
T Consensus 59 LmIlIP~VLLvlLLl~vV~l 78 (146)
T PF15102_consen 59 LMILIPLVLLVLLLLSVVCL 78 (146)
T ss_pred EEEeHHHHHHHHHHHHHHHh
Confidence 44444445665655555554
No 77
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=41.01 E-value=32 Score=26.28 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhccCchHHH
Q 024864 223 GARNALLRHLNQISSNRWLMI 243 (261)
Q Consensus 223 ~g~~eL~ka~~~~~~~r~~~~ 243 (261)
.|..-|..++.+..+++|-=+
T Consensus 32 ~G~~YL~~~y~y~~sh~WRN~ 52 (103)
T PF06422_consen 32 SGDDYLEESYGYSYSHRWRNF 52 (103)
T ss_pred eHHHHHhhhccccccchhhhH
Confidence 466778778887788887533
No 78
>PHA02675 ORF104 fusion protein; Provisional
Probab=40.77 E-value=1.5e+02 Score=22.03 Aligned_cols=36 Identities=8% Similarity=0.210 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 024864 186 ITELGGIFTHLATMVAQQGELAIRIDDNMDESLANV 221 (261)
Q Consensus 186 i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v 221 (261)
+..|-.+|+.+...-..=++.|+|.|.++|.-..++
T Consensus 39 L~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~M 74 (90)
T PHA02675 39 LVSLLDSYKTITDCCRETGARLDRLERHLETLREAL 74 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334447788888888889999999999888755443
No 79
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.70 E-value=71 Score=27.95 Aligned_cols=21 Identities=5% Similarity=0.123 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 024864 213 NMDESLANVEGARNALLRHLN 233 (261)
Q Consensus 213 nv~~a~~~v~~g~~eL~ka~~ 233 (261)
.++.|.....+....|.|+.+
T Consensus 164 ~L~rar~rL~~td~~lgkS~k 184 (220)
T KOG1666|consen 164 QLERARERLRETDANLGKSRK 184 (220)
T ss_pred HHHHHHHHHHhchhhhhHHHH
Confidence 356666666667777777666
No 80
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=39.48 E-value=1.1e+02 Score=28.67 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 024864 182 VESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLAN 220 (261)
Q Consensus 182 ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~ 220 (261)
+...+.+...+|-++-.....-||.--++++-.+....+
T Consensus 111 ls~al~~~~~~fp~~~~~li~~GE~sG~L~~~l~~la~~ 149 (399)
T PRK10573 111 FSEALLQWPQVFPPLYQALIATGELTGKLDECCFQLARQ 149 (399)
T ss_pred HHHHHHhCcCcCCHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 333444444444444333344566666666655555544
No 81
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=38.85 E-value=42 Score=22.07 Aligned_cols=17 Identities=12% Similarity=0.544 Sum_probs=9.7
Q ss_pred ccCchHHHHHHHHHHHH
Q 024864 236 SSNRWLMIKIFAVIIFF 252 (261)
Q Consensus 236 ~~~r~~~~~i~~vl~i~ 252 (261)
|+-||.+++++++.++|
T Consensus 2 kk~rwiili~iv~~Cl~ 18 (47)
T PRK10299 2 KKFRWVVLVVVVLACLL 18 (47)
T ss_pred ceeeehHHHHHHHHHHH
Confidence 45678776555444433
No 82
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=38.72 E-value=73 Score=20.82 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024864 180 HNVESTITELGGIFTHLATMVAQQGEL 206 (261)
Q Consensus 180 ~~ie~~i~el~~if~~la~~V~~Qge~ 206 (261)
.+|-..+.++++++.+|-..+.+|-.=
T Consensus 4 ~~l~~ql~~l~~~l~elk~~l~~Q~kE 30 (45)
T PF11598_consen 4 SQLIKQLSELNQMLQELKELLRQQIKE 30 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999998888877543
No 83
>PRK00295 hypothetical protein; Provisional
Probab=38.31 E-value=1.4e+02 Score=21.01 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 024864 179 LHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 224 (261)
Q Consensus 179 i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g 224 (261)
|..||..+.-.-..-.+|+..|..|...|++....+..-...+...
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777777777777888899999999998887777766655543
No 84
>PRK09793 methyl-accepting protein IV; Provisional
Probab=38.25 E-value=3.6e+02 Score=26.39 Aligned_cols=55 Identities=11% Similarity=0.177 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 024864 170 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 224 (261)
Q Consensus 170 ~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g 224 (261)
..+.+-...+.+|...+.++.+.+.+++..+.+|...++.|..++++...-+++.
T Consensus 429 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~e~~~~~~~i~~~i~~i~~~~~~~ 483 (533)
T PRK09793 429 KLVNNAAATMTDIVSSVTRVNDIMGEIASASEEQRRGIEQVAQAVSQMDQVTQQN 483 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555678889999999999999999999999999999888877655544443
No 85
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=37.60 E-value=1.2e+02 Score=19.94 Aligned_cols=51 Identities=6% Similarity=0.083 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 024864 171 YSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANV 221 (261)
Q Consensus 171 ~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v 221 (261)
.+..-+..+..+..-..+++.+..+=..++..=...+++++.++..+..++
T Consensus 13 ~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l 63 (66)
T smart00397 13 ELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRL 63 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444455555554444443
No 86
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=37.25 E-value=29 Score=34.17 Aligned_cols=59 Identities=19% Similarity=0.164 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024864 17 ALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDV 75 (261)
Q Consensus 17 ~~Ik~~i~~~~~~i~~lq~~~~~~~~~~~~~~~~~~~~~nvv~~L~~kl~~~s~~Fr~~ 75 (261)
.+++.....+--.++.+|.+.+..-.+.=.......+...+...|...|-+++.-|-.-
T Consensus 139 ~~l~~g~~~~~~av~~lQd~IN~~i~Pain~l~C~v~~~~lgi~L~~YltElttvFg~q 197 (490)
T PF00523_consen 139 QELTNGLSQLAVAVQALQDFINNEIIPAINQLSCEVADNQLGISLNQYLTELTTVFGPQ 197 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eecchHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 33344444444455555555543321100123455666666777778888888888764
No 87
>PF05366 Sarcolipin: Sarcolipin; InterPro: IPR008028 Sarcolipin is a 31 amino acid integral membrane protein that regulates Ca-ATPase activity in skeletal muscle [].; GO: 0030234 enzyme regulator activity, 0016020 membrane; PDB: 1JDM_A.
Probab=37.08 E-value=49 Score=19.40 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=14.1
Q ss_pred cCchHHHHHHHHHHHHHHHHHHH
Q 024864 237 SNRWLMIKIFAVIIFFLTVFMFF 259 (261)
Q Consensus 237 ~~r~~~~~i~~vl~i~~~~~~~~ 259 (261)
+.|-+++-+..+||-.+++|+++
T Consensus 4 strel~lnftvvlitvilmwllv 26 (31)
T PF05366_consen 4 STRELFLNFTVVLITVILMWLLV 26 (31)
T ss_dssp -SSSSHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHhhhHHHHHHHHHHHHH
Confidence 45556666666677777776653
No 88
>PRK10884 SH3 domain-containing protein; Provisional
Probab=37.05 E-value=2.8e+02 Score=24.01 Aligned_cols=40 Identities=10% Similarity=0.028 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 024864 191 GIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLR 230 (261)
Q Consensus 191 ~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~k 230 (261)
+.-.++..-+.+-...+..++..-......+..+..++..
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444545555555565666666666666666666644
No 89
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=36.97 E-value=1.1e+02 Score=19.18 Aligned_cols=8 Identities=13% Similarity=0.684 Sum_probs=3.4
Q ss_pred chHHHHHH
Q 024864 239 RWLMIKIF 246 (261)
Q Consensus 239 r~~~~~i~ 246 (261)
.|+.+-++
T Consensus 15 ~Wi~F~l~ 22 (38)
T PF09125_consen 15 GWIAFALA 22 (38)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 35544333
No 90
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=36.95 E-value=1.8e+02 Score=21.76 Aligned_cols=54 Identities=11% Similarity=0.262 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024864 182 VESTITELGGIFTHLATMVA-QQGELAIRIDDNMDESLANVEGARNALLRHLNQI 235 (261)
Q Consensus 182 ie~~i~el~~if~~la~~V~-~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~ 235 (261)
.+..-.++..-|..|-..+. ....+++.|+..-......+..-...+.......
T Consensus 37 ~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l 91 (127)
T smart00502 37 AADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKL 91 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666777776666 4457888888887777777777777666655543
No 91
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=36.78 E-value=39 Score=29.51 Aligned_cols=17 Identities=24% Similarity=0.553 Sum_probs=6.8
Q ss_pred HHHHHHHHH-HHHHHHHH
Q 024864 241 LMIKIFAVI-IFFLTVFM 257 (261)
Q Consensus 241 ~~~~i~~vl-~i~~~~~~ 257 (261)
.|++|++|| +|..++|+
T Consensus 132 IClIIIAVLfLICT~LfL 149 (227)
T PF05399_consen 132 ICLIIIAVLFLICTLLFL 149 (227)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444443 33333443
No 92
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=35.74 E-value=4.1e+02 Score=26.18 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 024864 169 ENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEG 223 (261)
Q Consensus 169 ~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~ 223 (261)
...+..-.+.+.+|...+.++.+++.+++..+.+|...++.|..++++...-+++
T Consensus 432 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~eq~~~~~~i~~~i~~i~~~~~~ 486 (554)
T PRK15041 432 STLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 486 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667889999999999999999999999999999998888765554443
No 93
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=35.58 E-value=55 Score=22.71 Aligned_cols=9 Identities=33% Similarity=0.829 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 024864 241 LMIKIFAVI 249 (261)
Q Consensus 241 ~~~~i~~vl 249 (261)
.+++.++++
T Consensus 43 ~~~~~~li~ 51 (64)
T COG4068 43 FMILMFLIL 51 (64)
T ss_pred HHHHHHHHH
Confidence 333334443
No 94
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=34.30 E-value=4.6e+02 Score=27.31 Aligned_cols=28 Identities=14% Similarity=0.024 Sum_probs=18.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024864 8 PIVEIQELTALIKDDITALNMALSDLQT 35 (261)
Q Consensus 8 ~~~eIe~LT~~Ik~~i~~~~~~i~~lq~ 35 (261)
...+.+.....+......++..+..+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 98 (968)
T TIGR02956 71 DERQRQAIGKKLTLQSETLLHSLKALGE 98 (968)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456666666677767777777776654
No 95
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=34.29 E-value=2e+02 Score=26.41 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 024864 190 GGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 224 (261)
Q Consensus 190 ~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g 224 (261)
+.||..+..-|..-.+.|+.|..-++.+...|++=
T Consensus 35 ~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l 69 (297)
T PF11945_consen 35 NDIFSRISARVERNRERLQAIQQRIEVAQAKIEKL 69 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888888877777643
No 96
>KOG3443 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.17 E-value=2.9e+02 Score=23.34 Aligned_cols=49 Identities=8% Similarity=0.024 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCchHHH
Q 024864 195 HLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMI 243 (261)
Q Consensus 195 ~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~ 243 (261)
+.-.+|+.|..|++|+|.--+....--.-+.+-|.+|..+-.....++.
T Consensus 32 tv~~iI~aqkQml~rfektnemllNc~~l~~~rl~~as~r~l~H~~tL~ 80 (184)
T KOG3443|consen 32 TVLEIIHAQKQMLERFEKTNEMLLNCNKLSVKRLDLASERFLQHLITLT 80 (184)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999987777777777777777777665444444443
No 97
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=33.95 E-value=2.8e+02 Score=23.10 Aligned_cols=64 Identities=20% Similarity=0.250 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024864 10 VEIQELTALIKDD--------ITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTE 81 (261)
Q Consensus 10 ~eIe~LT~~Ik~~--------i~~~~~~i~~lq~~~~~~~~~~~~~~~~~~~~~nvv~~L~~kl~~~s~~Fr~~~~~r~~ 81 (261)
.+|+.+..+|+.. |.+++..|+.|..--+-. .++ -|..+|.++-..|++.++.++.
T Consensus 28 K~Insl~~~v~~l~nk~d~~~yknyk~ki~eLke~lK~~-----------~NA-----Eleekll~lq~lfq~Kl~aKL~ 91 (160)
T PF03978_consen 28 KEINSLIEDVSKLNNKSDAEAYKNYKKKINELKEDLKDV-----------SNA-----ELEEKLLKLQKLFQDKLEAKLA 91 (160)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHh-----------hhH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777666654 777778888776532211 111 5778999999999999999999
Q ss_pred HHHHHHhH
Q 024864 82 NIKAHESR 89 (261)
Q Consensus 82 ~lk~~~~R 89 (261)
.+|+-+..
T Consensus 92 aLKAak~~ 99 (160)
T PF03978_consen 92 ALKAAKQK 99 (160)
T ss_pred HHHHHHHH
Confidence 99996543
No 98
>PHA02650 hypothetical protein; Provisional
Probab=33.79 E-value=53 Score=24.10 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=11.9
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 024864 238 NRWLMIKIFAVIIFFLTVFMF 258 (261)
Q Consensus 238 ~r~~~~~i~~vl~i~~~~~~~ 258 (261)
++|..+.+++++++++++.++
T Consensus 44 ~~~~~~~~~ii~i~~v~i~~l 64 (81)
T PHA02650 44 VSWFNGQNFIFLIFSLIIVAL 64 (81)
T ss_pred cCCchHHHHHHHHHHHHHHHH
Confidence 456667777766554444433
No 99
>PRK02793 phi X174 lysis protein; Provisional
Probab=33.70 E-value=1.8e+02 Score=20.76 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 024864 178 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEG 223 (261)
Q Consensus 178 ~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~ 223 (261)
.|..||..+.-.-..-.+|+..|..|...|++....+..-...+..
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777777777777778889998888888777666555543
No 100
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=33.51 E-value=67 Score=21.02 Aligned_cols=11 Identities=18% Similarity=0.528 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 024864 247 AVIIFFLTVFM 257 (261)
Q Consensus 247 ~vl~i~~~~~~ 257 (261)
+++|.+++++|
T Consensus 37 lilicllli~i 47 (52)
T PF04272_consen 37 LILICLLLICI 47 (52)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333444443
No 101
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=33.51 E-value=69 Score=31.57 Aligned_cols=21 Identities=5% Similarity=0.259 Sum_probs=10.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q 024864 209 RIDDNMDESLANVEGARNALL 229 (261)
Q Consensus 209 rId~nv~~a~~~v~~g~~eL~ 229 (261)
.+...+++|..+++++++-|.
T Consensus 442 ~vn~sL~~A~~~L~~Sn~iL~ 462 (490)
T PF00523_consen 442 QVNNSLNNAKDLLDKSNQILD 462 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555554
No 102
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=33.42 E-value=25 Score=32.00 Aligned_cols=18 Identities=17% Similarity=0.471 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024864 242 MIKIFAVIIFFLTVFMFF 259 (261)
Q Consensus 242 ~~~i~~vl~i~~~~~~~~ 259 (261)
|++|.+|++++++.|++|
T Consensus 281 il~IG~vl~i~~Ig~~if 298 (305)
T PF04639_consen 281 ILIIGGVLLIVFIGYFIF 298 (305)
T ss_pred HHHHHHHHHHHHhhheee
Confidence 444444454444444443
No 103
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=33.33 E-value=4.7e+02 Score=25.54 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 024864 171 YSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVE 222 (261)
Q Consensus 171 ~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~ 222 (261)
.+.+-.+.+.+|...+.++.+.+.+++..+.+|...++.|..++++....++
T Consensus 432 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~i~~~~~ 483 (553)
T PRK15048 432 LVESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALAVSEMDRVTQ 483 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556788889999999999999999999999999999888877666555
No 104
>PRK04325 hypothetical protein; Provisional
Probab=33.00 E-value=1.8e+02 Score=20.77 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 024864 179 LHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEG 223 (261)
Q Consensus 179 i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~ 223 (261)
|..||..+.-.-..-.+|+..|.+|...|++....+..-...+..
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666676666677777778889999998888777666555544
No 105
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=32.74 E-value=3.5e+02 Score=27.44 Aligned_cols=76 Identities=14% Similarity=0.228 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 024864 11 EIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRK 90 (261)
Q Consensus 11 eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~~~~~~~~~~~~~~~nvv~~L~~kl~~~s~~Fr~~~~~r~~~lk~~~~Rr 90 (261)
..+....-|+..|......|.++|..++.+. ..-..++..|...++.+|..+.++. .|++.+.+...=-
T Consensus 256 sFN~Ai~~I~~g~~t~~~Al~KiQ~VVN~q~----------~aL~~L~~qL~nnF~AISssI~dIy-~RLd~leAdaQVD 324 (610)
T PF01601_consen 256 SFNKAIGNIQLGFTTTASALNKIQDVVNQQG----------QALNQLTSQLSNNFGAISSSIQDIY-NRLDQLEADAQVD 324 (610)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhhhhhHHHHHHHH-HHHHHHhhccccc
Confidence 5677778888899999999999999887543 3345567888889999999999884 5777777664333
Q ss_pred hhhhccc
Q 024864 91 QIFSANA 97 (261)
Q Consensus 91 ~~f~~~~ 97 (261)
+.+++..
T Consensus 325 RLItGRL 331 (610)
T PF01601_consen 325 RLITGRL 331 (610)
T ss_dssp -------
T ss_pred ccccchH
Confidence 3344433
No 106
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=32.02 E-value=4.8e+02 Score=25.22 Aligned_cols=8 Identities=50% Similarity=0.854 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 024864 186 ITELGGIF 193 (261)
Q Consensus 186 i~el~~if 193 (261)
+.+|.++|
T Consensus 147 L~~L~~il 154 (418)
T cd07912 147 LTNLEDIF 154 (418)
T ss_pred HhHHHHHh
Confidence 33444444
No 107
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=31.20 E-value=2e+02 Score=20.64 Aligned_cols=9 Identities=11% Similarity=0.268 Sum_probs=3.5
Q ss_pred HHHHHhHHH
Q 024864 208 IRIDDNMDE 216 (261)
Q Consensus 208 drId~nv~~ 216 (261)
|.||..||.
T Consensus 25 deieekvef 33 (75)
T COG4064 25 DEIEEKVEF 33 (75)
T ss_pred HHHHHHHHh
Confidence 334443333
No 108
>PHA03054 IMV membrane protein; Provisional
Probab=31.10 E-value=65 Score=23.14 Aligned_cols=22 Identities=9% Similarity=0.262 Sum_probs=12.7
Q ss_pred cCchHHHHHHHHHHHHHHHHHH
Q 024864 237 SNRWLMIKIFAVIIFFLTVFMF 258 (261)
Q Consensus 237 ~~r~~~~~i~~vl~i~~~~~~~ 258 (261)
.+++..+.+++++++++++.++
T Consensus 42 ~~~~~~~~~~ii~l~~v~~~~l 63 (72)
T PHA03054 42 NTGCWGWYWLIIIFFIVLILLL 63 (72)
T ss_pred ccCCchHHHHHHHHHHHHHHHH
Confidence 3456667777766555544443
No 109
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=31.06 E-value=59 Score=24.18 Aligned_cols=9 Identities=11% Similarity=0.158 Sum_probs=4.3
Q ss_pred cCchHHHHH
Q 024864 237 SNRWLMIKI 245 (261)
Q Consensus 237 ~~r~~~~~i 245 (261)
.+|+.++..
T Consensus 8 ~K~k~~l~~ 16 (96)
T PF13800_consen 8 AKRKSRLRT 16 (96)
T ss_pred HHHHHHHHH
Confidence 344555543
No 110
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=31.00 E-value=3e+02 Score=22.84 Aligned_cols=13 Identities=23% Similarity=-0.000 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHH
Q 024864 186 ITELGGIFTHLAT 198 (261)
Q Consensus 186 i~el~~if~~la~ 198 (261)
+..|.++...|+.
T Consensus 108 ~eiL~~lg~~LG~ 120 (171)
T PRK08307 108 IEILLQFGKTLGQ 120 (171)
T ss_pred HHHHHHHHHHHCc
Confidence 4445555555555
No 111
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=30.99 E-value=43 Score=22.37 Aligned_cols=17 Identities=29% Similarity=0.768 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024864 242 MIKIFAVIIFFLTVFMF 258 (261)
Q Consensus 242 ~~~i~~vl~i~~~~~~~ 258 (261)
+++++-++|+|+.+|++
T Consensus 4 ilKFvY~mIiflslflv 20 (54)
T PF07127_consen 4 ILKFVYAMIIFLSLFLV 20 (54)
T ss_pred chhhHHHHHHHHHHHHh
Confidence 45566666666666655
No 112
>PHA02819 hypothetical protein; Provisional
Probab=30.73 E-value=68 Score=23.02 Aligned_cols=21 Identities=0% Similarity=0.110 Sum_probs=11.5
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 024864 238 NRWLMIKIFAVIIFFLTVFMF 258 (261)
Q Consensus 238 ~r~~~~~i~~vl~i~~~~~~~ 258 (261)
+++..+.+++++++++++.++
T Consensus 41 ~~~~~~~~~ii~l~~~~~~~~ 61 (71)
T PHA02819 41 KKSFLRYYLIIGLVTIVFVII 61 (71)
T ss_pred cCChhHHHHHHHHHHHHHHHH
Confidence 445666666666555444443
No 113
>PRK00736 hypothetical protein; Provisional
Probab=30.54 E-value=1.9e+02 Score=20.28 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 024864 179 LHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEG 223 (261)
Q Consensus 179 i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~ 223 (261)
|..||..+.-.-..-.+|+..|..|...|+++...+..-...+..
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666777778888998888888777666665544
No 114
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=30.29 E-value=2.3e+02 Score=21.62 Aligned_cols=10 Identities=30% Similarity=0.574 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 024864 191 GIFTHLATMV 200 (261)
Q Consensus 191 ~if~~la~~V 200 (261)
++..++.++|
T Consensus 7 ~l~~~~~~lv 16 (121)
T PF07332_consen 7 DLVDDLSTLV 16 (121)
T ss_pred HHHHHHHHHH
Confidence 3334444444
No 115
>PHA03240 envelope glycoprotein M; Provisional
Probab=30.21 E-value=51 Score=28.95 Aligned_cols=19 Identities=16% Similarity=0.357 Sum_probs=10.0
Q ss_pred CchHHHHHHHHHHHHHHHH
Q 024864 238 NRWLMIKIFAVIIFFLTVF 256 (261)
Q Consensus 238 ~r~~~~~i~~vl~i~~~~~ 256 (261)
.--..++|++|+||+++|+
T Consensus 210 aaH~~WIiilIIiIiIIIL 228 (258)
T PHA03240 210 AAHIAWIFIAIIIIIVIIL 228 (258)
T ss_pred cchHhHHHHHHHHHHHHHH
Confidence 3446666666555444333
No 116
>COG4640 Predicted membrane protein [Function unknown]
Probab=29.98 E-value=79 Score=30.28 Aligned_cols=10 Identities=10% Similarity=0.013 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 024864 223 GARNALLRHL 232 (261)
Q Consensus 223 ~g~~eL~ka~ 232 (261)
+|++++-...
T Consensus 31 qan~~tn~i~ 40 (465)
T COG4640 31 QANKSTNEII 40 (465)
T ss_pred hhhHHHHHHH
Confidence 4444554433
No 117
>PHA02513 V1 structural protein V1; Reviewed
Probab=29.91 E-value=1.1e+02 Score=24.16 Aligned_cols=17 Identities=12% Similarity=0.379 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024864 243 IKIFAVIIFFLTVFMFF 259 (261)
Q Consensus 243 ~~i~~vl~i~~~~~~~~ 259 (261)
++.++.|++|+++-+++
T Consensus 67 ~k~ii~L~IFIliGivl 83 (135)
T PHA02513 67 IGVLLGLFIFILIGIVL 83 (135)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444455555554443
No 118
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=29.52 E-value=59 Score=24.17 Aligned_cols=18 Identities=11% Similarity=0.333 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024864 242 MIKIFAVIIFFLTVFMFF 259 (261)
Q Consensus 242 ~~~i~~vl~i~~~~~~~~ 259 (261)
.+.+.++-+||+++++|.
T Consensus 12 ~L~vlGmg~VflfL~iLi 29 (84)
T COG3630 12 TLMVLGMGFVFLFLSILI 29 (84)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555556666655554
No 119
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=29.51 E-value=70 Score=22.75 Aligned_cols=15 Identities=27% Similarity=0.303 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 024864 244 KIFAVIIFFLTVFMF 258 (261)
Q Consensus 244 ~i~~vl~i~~~~~~~ 258 (261)
++++|+++.+++|.+
T Consensus 8 i~ICVaii~lIlY~i 22 (68)
T PF05961_consen 8 IIICVAIIGLILYGI 22 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444443
No 120
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=29.49 E-value=2e+02 Score=26.95 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 024864 186 ITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 224 (261)
Q Consensus 186 i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g 224 (261)
+.....+|-++-.-...-||.--+++...+....+.+.-
T Consensus 117 l~~~~~~fp~~~~~~i~~GE~sG~L~~~L~~~a~~~~~~ 155 (399)
T TIGR02120 117 LAQHPRDFPPLYRALVAAGEASGALDAVLERLADYLEER 155 (399)
T ss_pred HHhCcccCCHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 333334455554444455666666666666665555443
No 121
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=29.23 E-value=2.7e+02 Score=21.48 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 024864 176 AVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLAN 220 (261)
Q Consensus 176 ~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~ 220 (261)
.+.|..+...+.-.++=.+.+..-+..||++++.|..-+......
T Consensus 52 geqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkR 96 (102)
T PF01519_consen 52 GEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKR 96 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666667778888888887665544433
No 122
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=28.96 E-value=4.8e+02 Score=24.34 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 024864 192 IFTHLATMVAQQGELAIRIDDNMDESLANVEG 223 (261)
Q Consensus 192 if~~la~~V~~Qge~idrId~nv~~a~~~v~~ 223 (261)
+|-++......-||.-.++|.-.+......+.
T Consensus 325 ~fp~~~~~mi~~GE~sG~L~~~L~~~a~~~~~ 356 (399)
T TIGR02120 325 LFPPLLVHMIASGEKSGQLETMLERAADNQER 356 (399)
T ss_pred CCCHHHHHHHHHHhhhccHHHHHHHHHHHHHH
Confidence 45555555566777777777766666555443
No 123
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=28.89 E-value=47 Score=23.84 Aligned_cols=14 Identities=36% Similarity=0.852 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHH
Q 024864 245 IFAVIIFFLTVFMF 258 (261)
Q Consensus 245 i~~vl~i~~~~~~~ 258 (261)
+|++|+|++++|++
T Consensus 14 ~fA~LFv~Ll~yvl 27 (71)
T PF10960_consen 14 IFAVLFVWLLFYVL 27 (71)
T ss_pred cHHHHHHHHHHHHH
Confidence 35566666666654
No 124
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=28.87 E-value=1.9e+02 Score=23.95 Aligned_cols=38 Identities=13% Similarity=0.026 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 024864 185 TITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 224 (261)
Q Consensus 185 ~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g 224 (261)
+...|.++...|+. .+-...+..|+--.++-....+.+
T Consensus 106 d~e~L~~lg~~LG~--~D~~~Q~k~i~l~~~~L~~~~~~a 143 (170)
T PF09548_consen 106 DKEILLELGKSLGY--SDREMQEKHIELYLEQLEQQLEEA 143 (170)
T ss_pred HHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443 334444444444444443333333
No 125
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=28.63 E-value=68 Score=23.87 Aligned_cols=26 Identities=4% Similarity=0.326 Sum_probs=12.6
Q ss_pred HHhccCchHHHH---HHHHHHHHHHHHHH
Q 024864 233 NQISSNRWLMIK---IFAVIIFFLTVFMF 258 (261)
Q Consensus 233 ~~~~~~r~~~~~---i~~vl~i~~~~~~~ 258 (261)
++.|.+|..|.+ +.+..+|+++|||+
T Consensus 29 ~~Lka~kysIVI~FWv~LA~FV~~lF~iL 57 (90)
T PF15183_consen 29 EKLKANKYSIVIAFWVSLAAFVVFLFLIL 57 (90)
T ss_pred HHhcccceeeehhHHHHHHHHHHHHHHHH
Confidence 344556654433 33444555555554
No 126
>PHA03049 IMV membrane protein; Provisional
Probab=28.45 E-value=76 Score=22.51 Aligned_cols=15 Identities=33% Similarity=0.434 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 024864 244 KIFAVIIFFLTVFMF 258 (261)
Q Consensus 244 ~i~~vl~i~~~~~~~ 258 (261)
++++|+|+.+++|.+
T Consensus 8 ~iICVaIi~lIvYgi 22 (68)
T PHA03049 8 VIICVVIIGLIVYGI 22 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444443
No 127
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=28.43 E-value=3.5e+02 Score=22.48 Aligned_cols=29 Identities=10% Similarity=-0.016 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 024864 186 ITELGGIFTHLATMVAQQGELAIRIDDNMDE 216 (261)
Q Consensus 186 i~el~~if~~la~~V~~Qge~idrId~nv~~ 216 (261)
+..|.++...|+.+ +-...+..|+--.++
T Consensus 107 ~eiL~~lG~~LG~~--D~e~Q~k~i~L~~~~ 135 (170)
T TIGR02833 107 KEILLQFGKTLGES--DREGQQKHINLTLEH 135 (170)
T ss_pred HHHHHHHHHHHCcC--cHHHHHHHHHHHHHH
Confidence 44455555555553 333333444433333
No 128
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=28.13 E-value=3e+02 Score=26.94 Aligned_cols=6 Identities=17% Similarity=0.324 Sum_probs=2.2
Q ss_pred HHHHHH
Q 024864 53 HSTTVC 58 (261)
Q Consensus 53 ~~~nvv 58 (261)
|.-|..
T Consensus 16 ~~In~a 21 (569)
T PRK10600 16 HAINKA 21 (569)
T ss_pred HHHHHh
Confidence 333333
No 129
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=28.10 E-value=1.2e+02 Score=27.19 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHhccCchHHHHHHHH
Q 024864 213 NMDESLANVEGARNALLRHL-NQISSNRWLMIKIFAV 248 (261)
Q Consensus 213 nv~~a~~~v~~g~~eL~ka~-~~~~~~r~~~~~i~~v 248 (261)
.++.=...++.|+++|.+-. +..+.+||+..+..++
T Consensus 98 ~v~~~~~~~e~a~~~l~~i~~~~~~y~~~l~~~~~g~ 134 (250)
T COG2966 98 AVEHGRLDLEEAHKKLDEIQKQPLRYSRWLVLLMAGL 134 (250)
T ss_pred HHHcCCCCHHHHHHHHHHhhhCccccccHHHHHHHHH
Confidence 34444556777888887765 3566777776554443
No 130
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=28.09 E-value=83 Score=21.69 Aligned_cols=8 Identities=25% Similarity=0.525 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 024864 251 FFLTVFMF 258 (261)
Q Consensus 251 i~~~~~~~ 258 (261)
+|.+.|-+
T Consensus 18 l~~~~Ftl 25 (58)
T PF13314_consen 18 LFGASFTL 25 (58)
T ss_pred HHHHHHHH
Confidence 33333333
No 131
>PRK10404 hypothetical protein; Provisional
Probab=28.08 E-value=2.7e+02 Score=21.21 Aligned_cols=62 Identities=21% Similarity=0.271 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHH--------HHHHHHHHhccCchHHHHHHHH
Q 024864 187 TELGGIFTHLATMVAQQG-ELAIRIDDNMDESLANVEGARN--------ALLRHLNQISSNRWLMIKIFAV 248 (261)
Q Consensus 187 ~el~~if~~la~~V~~Qg-e~idrId~nv~~a~~~v~~g~~--------eL~ka~~~~~~~r~~~~~i~~v 248 (261)
.++-++++.-+.-..+.. ++=++++..+..+...+..+.. ....+..+.+.|.|.-+-|.+.
T Consensus 19 ~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~Pw~avGiaag 89 (101)
T PRK10404 19 ETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPWQGIGVGAA 89 (101)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 333344444443333222 3335666666666654443333 2333455888999987765544
No 132
>PHA02844 putative transmembrane protein; Provisional
Probab=28.03 E-value=78 Score=22.94 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=9.8
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 024864 239 RWLMIKIFAVIIFFLTVFMF 258 (261)
Q Consensus 239 r~~~~~i~~vl~i~~~~~~~ 258 (261)
++..+..++++++++++.++
T Consensus 44 ~~~~~~~~ii~i~~v~~~~~ 63 (75)
T PHA02844 44 CSSSTKIWILTIIFVVFATF 63 (75)
T ss_pred CChhHHHHHHHHHHHHHHHH
Confidence 34555655555444444333
No 133
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=28.03 E-value=2.4e+02 Score=27.34 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 024864 171 YSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVE 222 (261)
Q Consensus 171 ~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~ 222 (261)
+=..|..+.+.++..-..+|.|..+.-.|+..|...|-+.|.++.....-|.
T Consensus 49 leetk~~ttQslasvaYqIN~la~~~l~mL~lQ~~~L~~mEs~vn~isq~V~ 100 (483)
T KOG2546|consen 49 LEETKAYTTQSLASVAYQINTLAGHALRMLDLQAPQLRYMESQVNHISQTVD 100 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhe
Confidence 4467888899999999999999999999999999999999999987766654
No 134
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=27.81 E-value=1.7e+02 Score=20.37 Aligned_cols=6 Identities=33% Similarity=0.146 Sum_probs=2.5
Q ss_pred HHHHHH
Q 024864 224 ARNALL 229 (261)
Q Consensus 224 g~~eL~ 229 (261)
|..-|.
T Consensus 11 A~~FL~ 16 (60)
T PF06072_consen 11 ATEFLR 16 (60)
T ss_pred HHHHHH
Confidence 334444
No 135
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=27.68 E-value=2.5e+02 Score=20.60 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024864 19 IKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLT 77 (261)
Q Consensus 19 Ik~~i~~~~~~i~~lq~~~~~~~~~~~~~~~~~~~~~nvv~~L~~kl~~~s~~Fr~~~~ 77 (261)
|...|..++..+..|+...+.-+.+ +.+......-..++......+..++..++++..
T Consensus 1 is~~l~~in~~v~~l~k~~~~lGt~-~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~ 58 (102)
T PF14523_consen 1 ISSNLFKINQNVSQLEKLVNQLGTP-RDSQELREKIHQLIQKTNQLIKEISELLKKLNS 58 (102)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-SS-S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666655544321 112222222233344444555555655555533
No 136
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=27.58 E-value=2.8e+02 Score=21.13 Aligned_cols=42 Identities=12% Similarity=0.129 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 024864 178 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLA 219 (261)
Q Consensus 178 ~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~ 219 (261)
.+..||..-..+..=+..+-.=++.|....++.|.+++.-..
T Consensus 12 Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~r 53 (98)
T PF11166_consen 12 RIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEINR 53 (98)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHH
Confidence 455555555554444445555677888888888888888444
No 137
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=27.57 E-value=2.5e+02 Score=20.49 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024864 196 LATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQ 234 (261)
Q Consensus 196 la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~ 234 (261)
+++-|.+=...+|+++..++.+...+..|..+--+|.++
T Consensus 30 lss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~r 68 (78)
T COG4238 30 LSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQR 68 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 333444444567888889999999999888887777654
No 138
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=27.56 E-value=65 Score=23.65 Aligned_cols=10 Identities=30% Similarity=0.520 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 024864 245 IFAVIIFFLT 254 (261)
Q Consensus 245 i~~vl~i~~~ 254 (261)
+++..+||++
T Consensus 12 v~GM~~VF~f 21 (82)
T TIGR01195 12 VLGMGIVFLF 21 (82)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 139
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=27.51 E-value=2.5e+02 Score=23.23 Aligned_cols=14 Identities=14% Similarity=0.055 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 024864 220 NVEGARNALLRHLN 233 (261)
Q Consensus 220 ~v~~g~~eL~ka~~ 233 (261)
..+.=..++..|..
T Consensus 132 ~~~~L~~~~~~a~~ 145 (170)
T PF09548_consen 132 YLEQLEQQLEEARE 145 (170)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333444443
No 140
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=27.47 E-value=53 Score=20.30 Aligned_cols=18 Identities=17% Similarity=0.242 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024864 242 MIKIFAVIIFFLTVFMFF 259 (261)
Q Consensus 242 ~~~i~~vl~i~~~~~~~~ 259 (261)
+-+++.++++++.++-+|
T Consensus 12 iT~v~v~lM~i~tvg~v~ 29 (35)
T PF13253_consen 12 ITMVVVWLMLILTVGSVV 29 (35)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 141
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=27.43 E-value=5.7e+02 Score=24.67 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024864 174 SRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLN 233 (261)
Q Consensus 174 ~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~ 233 (261)
++..+|.+....|...++=.-.-+.-|.++.+.+.+ +|.+..+.++-..+|.+|++
T Consensus 228 q~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~----lEt~q~~leqeva~le~yyQ 283 (499)
T COG4372 228 QTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQR----LETAQARLEQEVAQLEAYYQ 283 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444556666666666 66788899999999999988
No 142
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=26.96 E-value=88 Score=22.68 Aligned_cols=16 Identities=6% Similarity=0.025 Sum_probs=10.2
Q ss_pred HHHHHHHhHHHHHHHH
Q 024864 206 LAIRIDDNMDESLANV 221 (261)
Q Consensus 206 ~idrId~nv~~a~~~v 221 (261)
.++.||.+........
T Consensus 10 ~L~eiEr~L~~~DP~f 25 (82)
T PF11239_consen 10 RLEEIERQLRADDPRF 25 (82)
T ss_pred HHHHHHHHHHhcCcHH
Confidence 7778887776544443
No 143
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=26.81 E-value=3.8e+02 Score=23.57 Aligned_cols=28 Identities=7% Similarity=0.096 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 024864 203 QGELAIRIDDNMDESLANVEGARNALLR 230 (261)
Q Consensus 203 Qge~idrId~nv~~a~~~v~~g~~eL~k 230 (261)
=++-++|||..++++..++......|.+
T Consensus 13 ~~~~L~rle~qi~q~~~~~~~~qs~l~~ 40 (251)
T COG5415 13 YTADLSRLESQIHQLDVALKKSQSILSQ 40 (251)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999998888888887777654
No 144
>PRK02119 hypothetical protein; Provisional
Probab=26.55 E-value=2.4e+02 Score=20.11 Aligned_cols=47 Identities=9% Similarity=0.097 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 024864 177 VALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEG 223 (261)
Q Consensus 177 ~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~ 223 (261)
..|..||..+.-.-..-.+|+..|..|...||+....+..-...+..
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666677777777777777778899999988888777666555544
No 145
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=26.30 E-value=4.4e+02 Score=22.97 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024864 58 CDDLKSKLMGATKELQDVLTTRTENI 83 (261)
Q Consensus 58 v~~L~~kl~~~s~~Fr~~~~~r~~~l 83 (261)
|..+-.+|.+....-+..-..|...+
T Consensus 41 i~~~E~~l~~~r~~~~~aK~~Y~~ai 66 (207)
T PF05546_consen 41 IEELEDELEAARQEVREAKAAYDDAI 66 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333
No 146
>PHA02414 hypothetical protein
Probab=26.23 E-value=3e+02 Score=21.08 Aligned_cols=50 Identities=22% Similarity=0.183 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024864 178 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRH 231 (261)
Q Consensus 178 ~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka 231 (261)
.-..++..+.||..|...|..=|.-+.|---.|.|.++.-.. +..+|...
T Consensus 30 dn~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee----~i~aL~~~ 79 (111)
T PHA02414 30 DNKELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEE----KISALAES 79 (111)
T ss_pred chHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHH----HHHHHHhc
Confidence 456788888888888888887777788888888888876544 44445443
No 147
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=25.81 E-value=1.1e+02 Score=18.36 Aligned_cols=10 Identities=10% Similarity=0.129 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 024864 250 IFFLTVFMFF 259 (261)
Q Consensus 250 ~i~~~~~~~~ 259 (261)
.+-+++|.+|
T Consensus 13 tlgiiFFAIf 22 (31)
T PRK11875 13 ALVTLFFAIA 22 (31)
T ss_pred HHHHHHHhhh
Confidence 3333444443
No 148
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=25.37 E-value=86 Score=29.69 Aligned_cols=25 Identities=12% Similarity=0.052 Sum_probs=15.0
Q ss_pred hccCchHHHHHHHHHHHHHHHHHHH
Q 024864 235 ISSNRWLMIKIFAVIIFFLTVFMFF 259 (261)
Q Consensus 235 ~~~~r~~~~~i~~vl~i~~~~~~~~ 259 (261)
..++||+|++++++++++.++|.++
T Consensus 36 L~r~k~~Il~~~~~~~~~g~~ya~~ 60 (377)
T PRK10381 36 LWKAKKTIIAITFAFACAGLLISFI 60 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677776666666666666543
No 149
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=25.26 E-value=2.4e+02 Score=20.96 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 024864 214 MDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFF 252 (261)
Q Consensus 214 v~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~vl~i~ 252 (261)
.......+..=.++|..-.+..+++-++..++|+++++|
T Consensus 45 ~~~l~~~l~~~E~eL~~LrkENrK~~~ls~~l~~v~~Lv 83 (85)
T PF15188_consen 45 LNELKEKLENNEKELKLLRKENRKSMLLSVALFFVCFLV 83 (85)
T ss_pred HHHHHHHhhccHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 333344444555666666667777888777777666554
No 150
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.25 E-value=2.4e+02 Score=26.92 Aligned_cols=38 Identities=21% Similarity=0.381 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 024864 186 ITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEG 223 (261)
Q Consensus 186 i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~ 223 (261)
+.....+|-++-.....-||.--+++.=.++...|.+.
T Consensus 114 l~~~~~~F~~~~~~~v~~gE~~G~L~~~l~~la~y~e~ 151 (397)
T COG1459 114 LAQLPGVFPDLYVAMVAAGERSGNLDEVLQRLAKYLEK 151 (397)
T ss_pred HHhCcccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 33333444444444445666655555555555555443
No 151
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.11 E-value=4.7e+02 Score=22.93 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024864 181 NVESTITELGGIFTHLATMVAQQGELAIRID 211 (261)
Q Consensus 181 ~ie~~i~el~~if~~la~~V~~Qge~idrId 211 (261)
++.....++..++..==..|..-|+.++..+
T Consensus 138 ~~n~el~~v~~im~~niedvl~rg~~l~~l~ 168 (216)
T KOG0862|consen 138 KLNQELQDVQRIMVENLEDVLQRGEVLNALS 168 (216)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhchHHHhhh
Confidence 3333333444443333333334444444333
No 152
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=24.50 E-value=87 Score=25.61 Aligned_cols=10 Identities=0% Similarity=0.222 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 024864 249 IIFFLTVFMF 258 (261)
Q Consensus 249 l~i~~~~~~~ 258 (261)
|++++++|++
T Consensus 130 l~i~~giy~~ 139 (145)
T PF10661_consen 130 LAICGGIYVV 139 (145)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 153
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=24.07 E-value=4.4 Score=29.94 Aligned_cols=10 Identities=30% Similarity=0.753 Sum_probs=0.0
Q ss_pred HhccCchHHH
Q 024864 234 QISSNRWLMI 243 (261)
Q Consensus 234 ~~~~~r~~~~ 243 (261)
.+++.+|+.|
T Consensus 61 ~rkKrrwlwL 70 (81)
T PF14812_consen 61 PRKKRRWLWL 70 (81)
T ss_dssp ----------
T ss_pred ccccchhHHH
Confidence 3444555544
No 154
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=23.96 E-value=2.8e+02 Score=19.88 Aligned_cols=11 Identities=9% Similarity=0.229 Sum_probs=5.4
Q ss_pred HHHHHHhHHHH
Q 024864 207 AIRIDDNMDES 217 (261)
Q Consensus 207 idrId~nv~~a 217 (261)
+|.||..||.+
T Consensus 21 Ld~iEeKvEf~ 31 (70)
T PF04210_consen 21 LDEIEEKVEFT 31 (70)
T ss_pred HHHHHHHHHhH
Confidence 45555554444
No 155
>COG3736 VirB8 Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]
Probab=23.89 E-value=1.8e+02 Score=25.96 Aligned_cols=18 Identities=11% Similarity=0.460 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 024864 240 WLMIKIFAVIIFFLTVFM 257 (261)
Q Consensus 240 ~~~~~i~~vl~i~~~~~~ 257 (261)
|++++++.++.+++++-|
T Consensus 44 ~~va~~~~~l~v~~~~~I 61 (239)
T COG3736 44 WRVAILFTLLAVAAVIAI 61 (239)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455544444444333
No 156
>PHA02689 ORF051 putative membrane protein; Provisional
Probab=23.72 E-value=1e+02 Score=24.67 Aligned_cols=23 Identities=17% Similarity=0.583 Sum_probs=15.0
Q ss_pred cCchHHHHHHHHHHHHHHHHHHH
Q 024864 237 SNRWLMIKIFAVIIFFLTVFMFF 259 (261)
Q Consensus 237 ~~r~~~~~i~~vl~i~~~~~~~~ 259 (261)
+.|...+++|=++++++++|+.|
T Consensus 27 ~~kY~~Iv~FEi~va~~L~~~FF 49 (128)
T PHA02689 27 AESYLAIAVLELLLALALALVFF 49 (128)
T ss_pred cchhHHHHHHHHHHHHHHHHHHH
Confidence 44556677776777777766654
No 157
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=23.67 E-value=2.3e+02 Score=18.79 Aligned_cols=52 Identities=10% Similarity=0.219 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 024864 173 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 224 (261)
Q Consensus 173 ~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g 224 (261)
..-+..+..+..-..+++.+-.+=+.++..=..-+++...++..+...+..+
T Consensus 7 ~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka 58 (63)
T PF05739_consen 7 DELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKA 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444455555555444444444
No 158
>PF15106 TMEM156: TMEM156 protein family
Probab=23.60 E-value=84 Score=27.47 Aligned_cols=12 Identities=17% Similarity=0.686 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 024864 247 AVIIFFLTVFMF 258 (261)
Q Consensus 247 ~vl~i~~~~~~~ 258 (261)
++++||+++|++
T Consensus 183 llVfiflii~iI 194 (226)
T PF15106_consen 183 LLVFIFLIILII 194 (226)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 159
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=23.11 E-value=6.9e+02 Score=24.18 Aligned_cols=59 Identities=10% Similarity=0.111 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 024864 172 SQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLR 230 (261)
Q Consensus 172 ~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~k 230 (261)
+.+-..+|.+.++.|.+..+-+..|...+.++.+-+.+|+.-+-++...+..-.+.+..
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~ 98 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIAD 98 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence 44555677788888888888888888888888888888888877777666665555543
No 160
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=23.10 E-value=1.9e+02 Score=21.62 Aligned_cols=10 Identities=20% Similarity=0.115 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 024864 224 ARNALLRHLN 233 (261)
Q Consensus 224 g~~eL~ka~~ 233 (261)
+..-+..+.+
T Consensus 43 a~~~i~~y~e 52 (87)
T PF11190_consen 43 AKAAISTYNE 52 (87)
T ss_pred HHHHHHHHHH
Confidence 3334444444
No 161
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=23.04 E-value=1.3e+02 Score=20.17 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024864 242 MIKIFAVIIFFLTVFMFF 259 (261)
Q Consensus 242 ~~~i~~vl~i~~~~~~~~ 259 (261)
.+.+|.+.|||+++|+++
T Consensus 24 w~~~f~~tivfa~~Y~~~ 41 (51)
T PF14715_consen 24 WLWLFYGTIVFAVGYLVL 41 (51)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344556666777766653
No 162
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=22.87 E-value=1.7e+02 Score=17.36 Aligned_cols=11 Identities=18% Similarity=0.232 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 024864 249 IIFFLTVFMFF 259 (261)
Q Consensus 249 l~i~~~~~~~~ 259 (261)
+.+-+++|.+|
T Consensus 12 ~tlgilffAI~ 22 (29)
T PF01405_consen 12 GTLGILFFAIF 22 (29)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhh
Confidence 33334444444
No 163
>PHA02967 hypothetical protein; Provisional
Probab=22.81 E-value=1e+02 Score=24.65 Aligned_cols=23 Identities=30% Similarity=0.765 Sum_probs=14.8
Q ss_pred cCchHHHHHHHHHHHHHHHHHHH
Q 024864 237 SNRWLMIKIFAVIIFFLTVFMFF 259 (261)
Q Consensus 237 ~~r~~~~~i~~vl~i~~~~~~~~ 259 (261)
..|...+++|=++++++++|+.|
T Consensus 24 ~~kY~~Iv~FEi~val~L~~~FF 46 (128)
T PHA02967 24 PNKYFYILVFEVIVALIIINFFF 46 (128)
T ss_pred cccchhHHHHHHHHHHHHHHHHH
Confidence 45556677776666666666654
No 164
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=22.61 E-value=1.5e+02 Score=18.38 Aligned_cols=12 Identities=50% Similarity=1.295 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 024864 247 AVIIFFLTVFMF 258 (261)
Q Consensus 247 ~vl~i~~~~~~~ 258 (261)
.|++.|+.+||.
T Consensus 10 ~vV~ffv~LFif 21 (36)
T PF02532_consen 10 TVVIFFVSLFIF 21 (36)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHhc
Confidence 444444445543
No 165
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=22.49 E-value=4.4e+02 Score=21.62 Aligned_cols=61 Identities=11% Similarity=0.193 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 024864 169 ENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALL 229 (261)
Q Consensus 169 ~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ 229 (261)
...+.+-...+..|...+.++...+.+++.-+.+|...+..|...+.+...-++.......
T Consensus 127 ~~~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~ 187 (213)
T PF00015_consen 127 SESVEETSESLEEIAESVEEISDSIEEISESAEEQSESIEQINESIEEISEISEQISASSE 187 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhcchhhhhhhhhhhHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667788888888888888888888888888888888776655555554444333
No 166
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=22.44 E-value=85 Score=23.10 Aligned_cols=26 Identities=12% Similarity=-0.012 Sum_probs=16.8
Q ss_pred HHHHhccCchHHHHHHHHHHHHHHHH
Q 024864 231 HLNQISSNRWLMIKIFAVIIFFLTVF 256 (261)
Q Consensus 231 a~~~~~~~r~~~~~i~~vl~i~~~~~ 256 (261)
+..+=++|+++++.++++.+++.+.+
T Consensus 3 ~~~yWr~n~rl~~~lL~iW~vvsfg~ 28 (81)
T PF13937_consen 3 ARAYWRKNLRLIAILLAIWFVVSFGV 28 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677777777777766655555
No 167
>PRK10132 hypothetical protein; Provisional
Probab=22.02 E-value=3.8e+02 Score=20.73 Aligned_cols=62 Identities=13% Similarity=0.174 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHhccCchHHHHHHHHH
Q 024864 188 ELGGIFTHLATMVAQQ-GELAIRIDDNMDESLANVE-------GARNALLRHLNQISSNRWLMIKIFAVI 249 (261)
Q Consensus 188 el~~if~~la~~V~~Q-ge~idrId~nv~~a~~~v~-------~g~~eL~ka~~~~~~~r~~~~~i~~vl 249 (261)
++-+++++-+.-..+. .+.=++++..+..+..... .+......+..+...|.|.-+-|.+.+
T Consensus 27 ~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~svgiaagv 96 (108)
T PRK10132 27 SLESVLKSWGSDAKGEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCSVGTAAAV 96 (108)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 3333444444333222 2334566666666654333 222222234458889999887665543
No 168
>CHL00031 psbT photosystem II protein T
Probab=21.91 E-value=1.2e+02 Score=18.52 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 024864 248 VIIFFLTVFMFF 259 (261)
Q Consensus 248 vl~i~~~~~~~~ 259 (261)
++.+-+++|.+|
T Consensus 11 ~~tlgilFFAI~ 22 (33)
T CHL00031 11 VSTLGIIFFAIF 22 (33)
T ss_pred HHHHHHHHHhhe
Confidence 333334444443
No 169
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=21.77 E-value=4.1e+02 Score=20.99 Aligned_cols=16 Identities=19% Similarity=-0.012 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhccCch
Q 024864 225 RNALLRHLNQISSNRW 240 (261)
Q Consensus 225 ~~eL~ka~~~~~~~r~ 240 (261)
..|+..-.++.+--+|
T Consensus 49 ~~el~~L~rR~~li~~ 64 (130)
T PF11026_consen 49 RRELRILRRRARLIRR 64 (130)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555544444443344
No 170
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=21.71 E-value=3.4e+02 Score=25.41 Aligned_cols=13 Identities=31% Similarity=0.424 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHH
Q 024864 199 MVAQQGELAIRID 211 (261)
Q Consensus 199 ~V~~Qge~idrId 211 (261)
+=.+|..++++++
T Consensus 151 i~~~~~~Ll~kL~ 163 (336)
T PF05055_consen 151 IHDQQSSLLEKLD 163 (336)
T ss_pred HHHHHHHHHHHHH
Confidence 3345666666665
No 171
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=21.46 E-value=1.5e+02 Score=21.88 Aligned_cols=8 Identities=25% Similarity=0.339 Sum_probs=3.2
Q ss_pred cCchHHHH
Q 024864 237 SNRWLMIK 244 (261)
Q Consensus 237 ~~r~~~~~ 244 (261)
+.+++.++
T Consensus 11 ~~~~l~i~ 18 (97)
T PF04999_consen 11 RQKKLIIL 18 (97)
T ss_pred HhhHHHHH
Confidence 33344443
No 172
>PF00584 SecE: SecE/Sec61-gamma subunits of protein translocation complex; InterPro: IPR001901 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. SecE, part of the main SecYEG translocase complex, is ~106 residues in length, and spans the inner membrane of the Gram-negative bacterial envelope. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. In eukaryotes, the evolutionary related protein sec61-gamma plays a role in protein translocation through the endoplasmic reticulum; it is part of a trimeric complex that also consist of sec61-alpha and beta []. Both secE and sec61-gamma are small proteins of about 60 to 90 amino acids that contain a single transmembrane region at their C-terminal extremity (Escherichia coli secE is an exception, in that it possess an extra N-terminal segment of 60 residues that contains two additional transmembrane domains) [].; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0016020 membrane; PDB: 3J01_B 2WW9_B 2WWA_B 3DL8_C 2WWB_B 3DIN_G 2ZJS_E 2ZQP_E.
Probab=21.36 E-value=1.4e+02 Score=19.88 Aligned_cols=14 Identities=7% Similarity=0.031 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHH
Q 024864 219 ANVEGARNALLRHL 232 (261)
Q Consensus 219 ~~v~~g~~eL~ka~ 232 (261)
.+..+...|++|-.
T Consensus 4 ~f~~~~~~Elkkv~ 17 (57)
T PF00584_consen 4 NFFREVKKELKKVT 17 (57)
T ss_dssp HHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 35566677777643
No 173
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=21.15 E-value=1e+02 Score=23.52 Aligned_cols=22 Identities=23% Similarity=0.588 Sum_probs=9.9
Q ss_pred ccCchHHHHHHHHHHHHHHHHH
Q 024864 236 SSNRWLMIKIFAVIIFFLTVFM 257 (261)
Q Consensus 236 ~~~r~~~~~i~~vl~i~~~~~~ 257 (261)
-+..|..++.-+++.+++++|+
T Consensus 20 ~~~~w~vi~~gilillLllifa 41 (98)
T COG5416 20 MKGQWTVIIVGILILLLLLIFA 41 (98)
T ss_pred ccceeeHHHHHHHHHHHHHHHH
Confidence 3444655554333334444444
No 174
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=21.10 E-value=1.8e+02 Score=24.17 Aligned_cols=29 Identities=21% Similarity=0.163 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHh-ccCchHHHHH
Q 024864 217 SLANVEGARNALLRHLNQI-SSNRWLMIKI 245 (261)
Q Consensus 217 a~~~v~~g~~eL~ka~~~~-~~~r~~~~~i 245 (261)
-...+++|.++|.+-.+.. ..++|+.++.
T Consensus 80 ~~~~~~ea~~~L~~I~~~~~~y~~~~~~l~ 109 (193)
T PF06738_consen 80 GQLSLEEAIERLDEIDREPPRYPPWLVILA 109 (193)
T ss_pred CCCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Confidence 3445667778887766644 4555654433
No 175
>PHA02955 hypothetical protein; Provisional
Probab=21.02 E-value=1e+02 Score=26.96 Aligned_cols=19 Identities=21% Similarity=0.670 Sum_probs=11.5
Q ss_pred cCchHHHHHHHHHHHHHHH
Q 024864 237 SNRWLMIKIFAVIIFFLTV 255 (261)
Q Consensus 237 ~~r~~~~~i~~vl~i~~~~ 255 (261)
..+|+++.+++++++|+++
T Consensus 178 ~~~w~ii~~v~ii~~~v~l 196 (213)
T PHA02955 178 SIKWFIIYIVLCLLILIIL 196 (213)
T ss_pred CCcchhHHHHHHHHHHHHH
Confidence 5578777666655554443
No 176
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=20.88 E-value=7.3e+02 Score=23.71 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024864 172 SQSRAVALHNVESTITELGGIFTHLAT 198 (261)
Q Consensus 172 ~~~R~~~i~~ie~~i~el~~if~~la~ 198 (261)
+..-..||.=+..++.=||+||..|+.
T Consensus 352 mtamQQEWTlVstSLqlLNqiy~~Lar 378 (379)
T PF04518_consen 352 MTAMQQEWTLVSTSLQLLNQIYSKLAR 378 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456678999999999999999998863
No 177
>TIGR03715 KxYKxGKxW KxYKxGKxW signal peptide. This model describes a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK and PEP-CTERM forms of signal peptide. This domain tends to occur on long, low-complexity (usually Serine-rich and heavily glycosylated) proteins of the Firmicutes, and (as with YSIRK) the majority of these proteins have the LPXTG cell wall-anchoring motif at the C-terminus.
Probab=20.79 E-value=77 Score=18.37 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=9.0
Q ss_pred HhccCchHHHHHHH
Q 024864 234 QISSNRWLMIKIFA 247 (261)
Q Consensus 234 ~~~~~r~~~~~i~~ 247 (261)
++++++|+...+..
T Consensus 7 yKsGK~Wv~a~~~~ 20 (29)
T TIGR03715 7 YKSGKQWVFAAITT 20 (29)
T ss_pred EecccHHHHHHHHH
Confidence 56777887665443
No 178
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=20.76 E-value=84 Score=23.38 Aligned_cols=19 Identities=26% Similarity=0.859 Sum_probs=13.1
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 024864 239 RWLMIKIFAVIIFFLTVFM 257 (261)
Q Consensus 239 r~~~~~i~~vl~i~~~~~~ 257 (261)
=|..+..|.++++|++.++
T Consensus 42 FWv~LA~FV~~lF~iL~~m 60 (90)
T PF15183_consen 42 FWVSLAAFVVFLFLILLYM 60 (90)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4777777777776666654
No 179
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=20.72 E-value=77 Score=23.16 Aligned_cols=6 Identities=0% Similarity=-0.357 Sum_probs=2.6
Q ss_pred HHHHHH
Q 024864 228 LLRHLN 233 (261)
Q Consensus 228 L~ka~~ 233 (261)
...|.+
T Consensus 53 ~~~A~~ 58 (82)
T PF04505_consen 53 YEGARR 58 (82)
T ss_pred HHHHHH
Confidence 334444
No 180
>PF01616 Orbi_NS3: Orbivirus NS3; InterPro: IPR002565 This is a family of Orbivirus non structural protein of unknown function, but which may play a role in release of the virus from infected cells [].
Probab=20.47 E-value=1.7e+02 Score=25.26 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhccCchHHHHHH
Q 024864 225 RNALLRHLNQISSNRWLMIKIF 246 (261)
Q Consensus 225 ~~eL~ka~~~~~~~r~~~~~i~ 246 (261)
-.+|+......+++|.++.++.
T Consensus 76 L~~L~~el~~~kRk~~il~~~~ 97 (195)
T PF01616_consen 76 LPKLKHELRKLKRKRRILHIVE 97 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444454444454443333
No 181
>PF14992 TMCO5: TMCO5 family
Probab=20.35 E-value=5.9e+02 Score=23.24 Aligned_cols=6 Identities=33% Similarity=0.778 Sum_probs=2.5
Q ss_pred HHHHHH
Q 024864 70 KELQDV 75 (261)
Q Consensus 70 ~~Fr~~ 75 (261)
.+|+++
T Consensus 63 ~~l~~l 68 (280)
T PF14992_consen 63 TDLQEL 68 (280)
T ss_pred HHHHHH
Confidence 344444
No 182
>COG4499 Predicted membrane protein [Function unknown]
Probab=20.30 E-value=1.7e+02 Score=28.12 Aligned_cols=10 Identities=0% Similarity=0.361 Sum_probs=5.4
Q ss_pred HhccCchHHH
Q 024864 234 QISSNRWLMI 243 (261)
Q Consensus 234 ~~~~~r~~~~ 243 (261)
...+.||-+.
T Consensus 211 ~VpK~k~~if 220 (434)
T COG4499 211 FVPKKKYTIF 220 (434)
T ss_pred ecccccceeh
Confidence 5556665443
No 183
>PRK04406 hypothetical protein; Provisional
Probab=20.15 E-value=3.4e+02 Score=19.49 Aligned_cols=46 Identities=17% Similarity=0.282 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 024864 178 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEG 223 (261)
Q Consensus 178 ~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~ 223 (261)
.|..||..+.-.-..-.+|+..|..|...|++....+..-...+..
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666676667777777778888888888888777666555543
Done!