Query 024864
Match_columns 261
No_of_seqs 167 out of 1025
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 15:44:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024864.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024864hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xhe_B Syntaxin1; exocytosis, 99.9 1.2E-27 4.3E-32 214.4 3.2 195 3-239 78-279 (279)
2 3hd7_B Syntaxin-1A; membrane p 99.9 5.7E-25 2E-29 170.9 13.7 87 168-254 12-98 (109)
3 1dn1_B Syntaxin 1A, syntaxin b 99.9 3.9E-25 1.3E-29 197.1 11.6 202 3-244 65-267 (267)
4 1jth_B Syntaxin 1A; coiled-coi 99.9 4.8E-23 1.6E-27 150.5 10.5 75 170-244 3-77 (77)
5 2nps_B Syntaxin 13, vesicle-as 99.9 4.7E-22 1.6E-26 143.0 10.1 70 173-242 2-71 (71)
6 1sfc_B Protein (syntaxin 1A), 99.9 3.8E-21 1.3E-25 142.3 10.5 72 168-239 12-83 (83)
7 3b5n_B Protein SSO1; snare com 99.8 8.5E-21 2.9E-25 135.7 11.0 67 170-236 3-69 (69)
8 1gl2_B Syntaxin 7; membrane pr 99.8 2.5E-20 8.6E-25 131.7 8.4 64 170-233 2-65 (65)
9 1n7s_B Syntaxin 1A; neuronal s 99.8 8E-20 2.7E-24 130.2 10.5 64 169-232 4-67 (68)
10 1fio_A SSO1 protein; four heli 99.6 4.9E-16 1.7E-20 131.6 9.4 143 10-204 49-196 (196)
11 3c98_B Syntaxin-1A; protein co 99.6 2.7E-15 9.3E-20 131.8 7.3 194 10-243 85-278 (279)
12 3hd7_B Syntaxin-1A; membrane p 97.9 0.00025 8.6E-09 54.3 13.2 90 161-254 12-101 (109)
13 1ez3_A Syntaxin-1A; three heli 97.7 0.00038 1.3E-08 54.1 10.7 76 10-86 50-125 (127)
14 3hd7_A Vesicle-associated memb 97.2 0.0093 3.2E-07 44.0 12.5 53 177-233 5-57 (91)
15 2nps_D Syntaxin-6; vesicle fus 97.2 0.0017 5.8E-08 47.0 8.1 64 176-239 18-81 (82)
16 1s94_A S-syntaxin; three helix 97.0 0.00058 2E-08 56.5 4.7 83 10-93 81-163 (180)
17 1n7s_D SNAP-25A; neuronal snar 96.5 0.032 1.1E-06 38.4 9.5 57 174-230 7-63 (66)
18 1sfc_D Protein (SNAP-25B), pro 96.4 0.032 1.1E-06 40.7 9.9 59 172-230 24-82 (87)
19 1gl2_D Syntaxin 8, vesicle tra 96.2 0.024 8.3E-07 38.9 7.5 58 173-230 5-62 (65)
20 1nhl_A Synaptosomal-associated 96.1 0.043 1.5E-06 36.3 8.4 42 188-229 11-52 (54)
21 1n7s_C SNAP-25A; neuronal snar 95.7 0.22 7.7E-06 35.5 11.0 52 178-229 24-75 (79)
22 1l4a_D S-SNAP25 fusion protein 95.6 0.064 2.2E-06 39.1 8.1 58 173-230 26-83 (87)
23 3b5n_D Protein transport prote 95.4 0.17 6E-06 34.6 9.2 57 174-230 7-63 (64)
24 2kog_A Vesicle-associated memb 94.6 0.0024 8.4E-08 49.5 -2.2 38 179-216 35-72 (119)
25 3b5n_C Protein transport prote 94.1 0.64 2.2E-05 32.3 9.6 33 198-230 33-65 (70)
26 1l4a_C S-SNAP25 fusion protein 93.9 0.24 8.1E-06 35.8 7.3 50 179-228 29-78 (83)
27 1jth_B Syntaxin 1A; coiled-coi 90.1 3.5 0.00012 28.8 9.5 71 167-241 7-77 (77)
28 1gl2_C VTI1B, vesicle transpor 87.3 5.2 0.00018 27.1 8.9 36 194-229 26-61 (65)
29 2dnx_A Syntaxin-12; snare, HAB 86.3 6.9 0.00024 30.1 9.9 68 11-84 52-119 (130)
30 1sfc_A VAMP 2, protein (synapt 78.7 15 0.00051 26.8 8.6 41 178-218 31-71 (96)
31 2nps_C Vesicle transport throu 78.5 15 0.00051 25.9 10.8 60 179-238 21-80 (81)
32 2dnx_A Syntaxin-12; snare, HAB 76.8 19 0.00064 27.6 9.1 32 10-41 10-41 (130)
33 2nps_B Syntaxin 13, vesicle-as 72.4 20 0.00068 24.4 8.6 60 170-229 6-65 (71)
34 3b5n_A Synaptobrevin homolog 1 71.6 19 0.00065 23.8 8.3 39 178-216 3-41 (61)
35 1sfc_B Protein (syntaxin 1A), 64.8 33 0.0011 24.0 9.7 66 162-227 13-78 (83)
36 2nps_A VAMP-4, vesicle-associa 64.2 20 0.0007 24.6 6.1 38 179-216 10-47 (74)
37 3hd7_A Vesicle-associated memb 63.0 39 0.0013 24.2 11.7 24 167-190 23-46 (91)
38 1n7s_A Vesicle-associated memb 60.9 33 0.0011 22.6 8.4 43 177-219 4-46 (63)
39 3ghg_A Fibrinogen alpha chain; 57.6 99 0.0034 29.4 11.2 28 191-218 131-158 (562)
40 1gl2_B Syntaxin 7; membrane pr 54.7 44 0.0015 22.2 8.6 56 170-225 9-64 (65)
41 3n27_A Fusion glycoprotein F0, 54.0 52 0.0018 23.1 6.6 62 172-235 15-76 (80)
42 3r84_A Mediator of RNA polymer 53.9 58 0.002 23.3 8.5 62 171-232 2-67 (86)
43 2l3l_A Tubulin-specific chaper 53.0 39 0.0013 25.3 6.4 61 10-72 45-107 (111)
44 4gwp_A Mediator of RNA polymer 51.4 64 0.0022 24.3 7.2 64 170-233 4-71 (115)
45 2kog_A Vesicle-associated memb 51.3 14 0.00049 28.0 3.8 12 170-181 54-65 (119)
46 3b5n_B Protein SSO1; snare com 51.1 53 0.0018 22.0 10.3 58 169-226 9-66 (69)
47 2bez_C E2 glycoprotein; coiled 48.6 66 0.0023 22.4 10.7 62 11-83 13-74 (77)
48 1jdm_A Sarcolipin; helix, memb 44.4 21 0.00072 20.2 2.7 21 239-259 6-26 (31)
49 1fio_A SSO1 protein; four heli 42.9 1.2E+02 0.0042 23.9 9.2 31 9-39 4-34 (196)
50 1n7s_B Syntaxin 1A; neuronal s 42.5 73 0.0025 21.2 9.8 57 169-225 11-67 (68)
51 1l4a_A Synaptobrevin; snare, s 39.1 76 0.0026 21.9 5.8 38 179-216 17-54 (80)
52 3p8c_F ABL interactor 2; actin 35.2 1.7E+02 0.0058 23.3 9.1 51 171-221 48-98 (159)
53 1urq_A M-tomosyn isoform; tran 34.9 99 0.0034 20.5 7.3 40 179-218 6-45 (63)
54 3efg_A Protein SLYX homolog; x 33.7 1.2E+02 0.0041 21.0 6.6 46 179-224 16-61 (78)
55 1fjk_A Cardiac phospholamban; 33.3 45 0.0016 20.9 3.2 12 247-258 37-48 (52)
56 3zx6_A HAMP, methyl-accepting 32.8 2.5E+02 0.0085 24.5 10.8 55 170-224 220-274 (341)
57 1qu7_A Methyl-accepting chemot 31.5 2.2E+02 0.0074 23.5 8.5 54 171-224 141-194 (227)
58 3arc_T Photosystem II reaction 28.6 69 0.0024 18.5 3.2 11 249-259 12-22 (32)
59 1gl2_A Endobrevin; membrane pr 26.4 1.4E+02 0.0048 19.6 8.2 41 177-217 9-49 (65)
60 1deq_A Fibrinogen (alpha chain 26.3 3.7E+02 0.013 24.4 9.6 24 12-35 58-81 (390)
61 3c98_B Syntaxin-1A; protein co 25.2 2.7E+02 0.0094 22.6 8.3 67 165-231 207-273 (279)
62 2qyw_A Vesicle transport throu 24.5 1.5E+02 0.0052 21.4 5.5 40 50-89 57-96 (102)
63 2c5k_T Syntaxin TLG1, T-snare 23.8 2E+02 0.0069 20.5 7.4 54 10-73 39-92 (95)
64 1wyy_A E2 glycoprotein; membra 22.8 2.7E+02 0.0094 21.7 10.9 66 11-87 26-91 (149)
65 4dnd_A Syntaxin-10, SYN10; str 22.8 2.5E+02 0.0086 21.2 8.6 61 10-70 63-126 (130)
66 3din_D Preprotein translocase 21.5 1.5E+02 0.005 19.6 4.5 29 218-246 5-34 (65)
67 1wdg_A E2 glycoprotein; MHV, c 20.4 2.4E+02 0.0081 20.0 5.7 30 11-40 8-37 (94)
No 1
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=99.93 E-value=1.2e-27 Score=214.35 Aligned_cols=195 Identities=18% Similarity=0.200 Sum_probs=124.2
Q ss_pred CCCCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-C--CCchh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024864 3 SMFDD---PIVEIQELTALIKDDITALNMALSDLQTLQNLEIVE-G--NYSQD-RVVHSTTVCDDLKSKLMGATKELQDV 75 (261)
Q Consensus 3 ~~FdD---~~~eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~~~-~--~~~~~-~~~~~~nvv~~L~~kl~~~s~~Fr~~ 75 (261)
|.|+| ...+|+.|+..|++.+..|+..|+.|+...+..... + ..+.. +..+..+++..|+.+|++++..|+++
T Consensus 78 ~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~ 157 (279)
T 2xhe_B 78 VSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDV 157 (279)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777 347999999999999999999999999866533210 0 11222 56899999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhhhhhccccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccCCcCCCCCchh
Q 024864 76 LTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHH 155 (261)
Q Consensus 76 ~~~r~~~lk~~~~Rr~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~d~~~~~~ 155 (261)
+..|.+++|.+..|. |...+ | .+ .. +..+.+. ..|. +.
T Consensus 158 Q~~y~e~~k~~~~R~--~~i~~----~-----------~~--~~-ee~~~~~---------e~g~-----------~~-- 195 (279)
T 2xhe_B 158 QAENKRRYGENVARQ--CRVVE----P-----------SL--SD-DAIQKVI---------EHGT-----------EG-- 195 (279)
T ss_dssp HHHHHHHHHHTTTTS--CCSSC----C-----------CC--SS-TTHHHHH---------HHC----------------
T ss_pred HHHHHHHHHHHHHHH--HHHhC----C-----------CC--CH-HHHHHHH---------hCCc-----------hH--
Confidence 999999999876553 21110 1 00 00 0000000 0000 00
Q ss_pred hhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024864 156 MEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQI 235 (261)
Q Consensus 156 ~~~~~q~q~~~~~~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~ 235 (261)
.+++.+.+..+....++++|+++|.+||++|.||++||+|||+||++||++||+||+||+.|..||++|+.+|.||.+++
T Consensus 196 ~f~q~~~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~q 275 (279)
T 2xhe_B 196 IFSGMRLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQ 275 (279)
T ss_dssp --------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01111122233445689999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCc
Q 024864 236 SSNR 239 (261)
Q Consensus 236 ~~~r 239 (261)
+++|
T Consensus 276 k~~R 279 (279)
T 2xhe_B 276 ESAR 279 (279)
T ss_dssp ----
T ss_pred HccC
Confidence 8775
No 2
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.92 E-value=5.7e-25 Score=170.93 Aligned_cols=87 Identities=24% Similarity=0.313 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHH
Q 024864 168 QENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFA 247 (261)
Q Consensus 168 ~~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~i~~ 247 (261)
...++++|++++.+||++|.||++||+|||+||++||++||+||+|+++|..||++|+.+|.||.++++++|++.|++++
T Consensus 12 ~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l~ 91 (109)
T 3hd7_B 12 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIII 91 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehHH
Confidence 46789999999999999999999999999999999999999999999999999999999999998877777666555555
Q ss_pred HHHHHHH
Q 024864 248 VIIFFLT 254 (261)
Q Consensus 248 vl~i~~~ 254 (261)
|++++++
T Consensus 92 ~~~i~~~ 98 (109)
T 3hd7_B 92 CCVILGI 98 (109)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444433
No 3
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=99.92 E-value=3.9e-25 Score=197.08 Aligned_cols=202 Identities=19% Similarity=0.189 Sum_probs=132.9
Q ss_pred CCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024864 3 SMFDDPI-VEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTE 81 (261)
Q Consensus 3 ~~FdD~~-~eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~~~~~~~~~~~~~~~nvv~~L~~kl~~~s~~Fr~~~~~r~~ 81 (261)
|.+++.. .+|+.++..|++.+..|...|+.|+...... ..+..+....+...+++..|..+|++++..|++++..|.+
T Consensus 65 ~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~-~~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e 143 (267)
T 1dn1_B 65 PNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQE-EGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRE 143 (267)
T ss_dssp SSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444322 5999999999999999999999998864422 1112345666889999999999999999999999999999
Q ss_pred HHHHHHhHhhhhhccccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccCCcCCCCCchhhhhhHH
Q 024864 82 NIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSML 161 (261)
Q Consensus 82 ~lk~~~~Rr~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~q 161 (261)
++|.+..|.-.+.+...+... +. .+..+ ++++.|....+- .
T Consensus 144 ~~k~~i~Rq~~i~~~~~tdee-ie-------------------~~ie~--------g~~~~f~q~~l~---------~-- 184 (267)
T 1dn1_B 144 RCKGRIQRQLEITGRTTTSEE-LE-------------------DMLES--------GNPAIFASGIIM---------D-- 184 (267)
T ss_dssp HHHHHHHHHHHHTTCCCCHHH-HH-------------------HHHHT--------CSSCTTTTTCCC---------C--
T ss_pred HHHHHHHhHhhccCCCCCHHH-HH-------------------HHHhC--------CcHHHHHHHHHH---------h--
Confidence 999988876444432110000 00 00000 000011100000 0
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCchH
Q 024864 162 QQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWL 241 (261)
Q Consensus 162 ~q~~~~~~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~ 241 (261)
.........++++|+++|.+||++|.||++||+|||+||++||++||+||+||+.|..||+.|..+|.+|.++++++|++
T Consensus 185 ~~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk 264 (267)
T 1dn1_B 185 SSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRK 264 (267)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC----------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 01122346789999999999999999999999999999999999999999999999999999999999999988888876
Q ss_pred HHH
Q 024864 242 MIK 244 (261)
Q Consensus 242 ~~~ 244 (261)
.|+
T Consensus 265 ~~~ 267 (267)
T 1dn1_B 265 KIM 267 (267)
T ss_dssp ---
T ss_pred ccC
Confidence 653
No 4
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.89 E-value=4.8e-23 Score=150.49 Aligned_cols=75 Identities=27% Similarity=0.358 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCchHHHH
Q 024864 170 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIK 244 (261)
Q Consensus 170 ~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~ 244 (261)
.++++|+++|.+||++|.||++||+|||+||.+||++||+||+||+.|..||++|..+|.||.++++++|+++|+
T Consensus 3 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~~i 77 (77)
T 1jth_B 3 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccC
Confidence 578999999999999999999999999999999999999999999999999999999999999988888887663
No 5
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.87 E-value=4.7e-22 Score=143.01 Aligned_cols=70 Identities=31% Similarity=0.429 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCchHH
Q 024864 173 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLM 242 (261)
Q Consensus 173 ~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~ 242 (261)
++|+++|.+||++|.||++||+|||+||++||++||+||+||+.|..||++|..+|.+|.++++++|+|+
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~~ 71 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKKM 71 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4899999999999999999999999999999999999999999999999999999999999888887763
No 6
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.85 E-value=3.8e-21 Score=142.32 Aligned_cols=72 Identities=26% Similarity=0.370 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCc
Q 024864 168 QENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNR 239 (261)
Q Consensus 168 ~~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r 239 (261)
...++++|+++|.+||++|.||++||+|||+||++||++||+||+||+.|..||++|..+|.||.++++++|
T Consensus 12 ~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 83 (83)
T 1sfc_B 12 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 456899999999999999999999999999999999999999999999999999999999999999988775
No 7
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.85 E-value=8.5e-21 Score=135.67 Aligned_cols=67 Identities=22% Similarity=0.304 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc
Q 024864 170 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQIS 236 (261)
Q Consensus 170 ~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~ 236 (261)
.++++|+++|.+||++|.||++||+||++||++||++||+||+||+.|..||++|..+|.||.++++
T Consensus 3 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qr 69 (69)
T 3b5n_B 3 AEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999999999999998764
No 8
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.82 E-value=2.5e-20 Score=131.66 Aligned_cols=64 Identities=25% Similarity=0.445 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024864 170 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLN 233 (261)
Q Consensus 170 ~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~ 233 (261)
.++++|+++|.+|+++|.||++||+|||+||++||++||+||+||+.|..||++|..+|.||.+
T Consensus 2 ~~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 2 SHMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4678999999999999999999999999999999999999999999999999999999999863
No 9
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.82 E-value=8e-20 Score=130.22 Aligned_cols=64 Identities=27% Similarity=0.397 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 024864 169 ENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHL 232 (261)
Q Consensus 169 ~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~ 232 (261)
..++++|+++|.+||++|.||++||+|||+||.+||++||+||+||+.|..||++|..+|.||.
T Consensus 4 l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 4 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4588999999999999999999999999999999999999999999999999999999999985
No 10
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.64 E-value=4.9e-16 Score=131.61 Aligned_cols=143 Identities=15% Similarity=0.179 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 024864 10 VEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESR 89 (261)
Q Consensus 10 ~eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~~~~~~~~~~~~~~~nvv~~L~~kl~~~s~~Fr~~~~~r~~~lk~~~~R 89 (261)
.+|+.++..|++.+..|+..|+.|+.... ...+.++++..|+.+|++++..|++++..|.+++|.+..|
T Consensus 49 ~~i~~l~~~i~~~~~~~~~~lk~l~~~~~-----------~~r~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~r 117 (196)
T 1fio_A 49 HSLDNFVAQATDLQFKLKNEIKSAQRDGI-----------HDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKR 117 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcch-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999986421 2367899999999999999999999999999999999987
Q ss_pred hhhhhccccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccCCcCCCCCchhhhhhHH-----Hhh
Q 024864 90 KQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSML-----QQV 164 (261)
Q Consensus 90 r~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~q-----~q~ 164 (261)
+..+..+..+ .. ..+.... .+| ..+.+++.. .+.
T Consensus 118 q~~i~~~~~~-~~-------------------e~~~~~~--------~~~-------------~~~~f~~~~~~~~~~~~ 156 (196)
T 1fio_A 118 QYMIIQPEAT-ED-------------------EVEAAIS--------DVG-------------GQQIFSQALLNANRRGE 156 (196)
T ss_dssp HHHHHCTTCC-HH-------------------HHHHHTS--------HHH-------------HHHHHHHHTC------C
T ss_pred HHhhcCCCCC-HH-------------------HHHHHHH--------cCC-------------chhHHHHHHHhccchHH
Confidence 7444321100 00 0000000 000 000011110 111
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024864 165 VPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQG 204 (261)
Q Consensus 165 ~~~~~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qg 204 (261)
......++++|+++|.+||++|.||++||+|||+||++||
T Consensus 157 ~~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 157 AKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2345678999999999999999999999999999999998
No 11
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=99.57 E-value=2.7e-15 Score=131.78 Aligned_cols=194 Identities=20% Similarity=0.209 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 024864 10 VEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESR 89 (261)
Q Consensus 10 ~eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~~~~~~~~~~~~~~~nvv~~L~~kl~~~s~~Fr~~~~~r~~~lk~~~~R 89 (261)
.+++.++..|+..+..++..+..|+........ .........+..+....|+..++.+...|...+..|...++....+
T Consensus 85 ~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~-i~~~~~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~evr~ 163 (279)
T 3c98_B 85 EELEELMSDIKKTANKVRSKLKSIEQSIEQEEG-LNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQR 163 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999886654332 1234567888999999999999999999999999999888887766
Q ss_pred hhhhhccccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccCCcCCCCCchhhhhhHHHhhhhhhh
Q 024864 90 KQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQE 169 (261)
Q Consensus 90 r~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~q~q~~~~~~ 169 (261)
...++............ ... .....+ ... ............
T Consensus 164 la~~~~~~~~~~~~~~~---------~~~--~~~~~~---------------------~~~-------~~~~~~~~~~~~ 204 (279)
T 3c98_B 164 QLEITGRTTTSEELEDM---------LES--GNPAIF---------------------ASG-------IIMDSSISKQAL 204 (279)
T ss_dssp HHHHHTCCCCHHHHHHH---------HHS--CCTTSS---------------------TTT-------SCSCSSSTTHHH
T ss_pred HHHhhccCccchHHHHH---------HHh--hhhHHH---------------------HHH-------HHHHHHHHHHHH
Confidence 65555432110000000 000 000000 000 000011223445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCchHHH
Q 024864 170 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMI 243 (261)
Q Consensus 170 ~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~ 243 (261)
.++++|..++.+|+.+|.+|+++|.+|+.+|.+||+++++|++||+++..+|+.|..+|.+|.+++++.|++.|
T Consensus 205 ~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~Rkkk~ 278 (279)
T 3c98_B 205 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 278 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc
Confidence 68899999999999999999999999999999999999999999999999999999999999998777766544
No 12
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.94 E-value=0.00025 Score=54.28 Aligned_cols=90 Identities=4% Similarity=0.088 Sum_probs=73.0
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCch
Q 024864 161 LQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRW 240 (261)
Q Consensus 161 q~q~~~~~~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~ 240 (261)
.+...++....+.+-+..+.+|..-..+|+.|..+=+.+|..=...++....||+.+...+.+|.+ +.++.++++|
T Consensus 12 ~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~----yqk~~rkk~~ 87 (109)
T 3hd7_B 12 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK----YQSKARRKKI 87 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccCcce
Confidence 344455667788999999999999999999999999999999999999999999999999999974 4454555677
Q ss_pred HHHHHHHHHHHHHH
Q 024864 241 LMIKIFAVIIFFLT 254 (261)
Q Consensus 241 ~~~~i~~vl~i~~~ 254 (261)
++++|++++++++.
T Consensus 88 i~l~~~~i~~~i~~ 101 (109)
T 3hd7_B 88 MIIICCVILGIIIA 101 (109)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHH
Confidence 77666655544443
No 13
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=97.69 E-value=0.00038 Score=54.11 Aligned_cols=76 Identities=20% Similarity=0.171 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024864 10 VEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAH 86 (261)
Q Consensus 10 ~eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~~~~~~~~~~~~~~~nvv~~L~~kl~~~s~~Fr~~~~~r~~~lk~~ 86 (261)
.+++.++.+|+.....|...|+.|+...... ..+..+....+...+.+.+|..+|++++..|+.++..|.+.+|.+
T Consensus 50 ~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~-~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~r 125 (127)
T 1ez3_A 50 EELEELMSDIKKTANKVRSKLKSIEQSIEQE-EGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGR 125 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999998754432 222345567799999999999999999999999999998877643
No 14
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=97.22 E-value=0.0093 Score=43.99 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024864 177 VALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLN 233 (261)
Q Consensus 177 ~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~ 233 (261)
+.+.++...+.|+..++.+==.-|.+-||-||.+++..++-.. ......+..+
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~----~s~~F~~~A~ 57 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA----GASQFETSAA 57 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 3578888999999999998888899999999988876664443 4444444444
No 15
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=97.20 E-value=0.0017 Score=47.03 Aligned_cols=64 Identities=13% Similarity=0.184 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCc
Q 024864 176 AVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNR 239 (261)
Q Consensus 176 ~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r 239 (261)
.+.+..|...|..|..|-.+++.=|.+|..+||.++..++.+...+..+.+-+.+..++.+.++
T Consensus 18 D~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~~ 81 (82)
T 2nps_D 18 DEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRR 81 (82)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence 4457889999999999999999999999999999999999999999999999988877655443
No 16
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=97.02 E-value=0.00058 Score=56.48 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 024864 10 VEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESR 89 (261)
Q Consensus 10 ~eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~~~~~~~~~~~~~~~nvv~~L~~kl~~~s~~Fr~~~~~r~~~lk~~~~R 89 (261)
.+++.|+..|+.....|...|+.|........ .+..+....+...+.+.+|..+|++++..|+.++..|.+++|.+-.|
T Consensus 81 ~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~-~~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~i~R 159 (180)
T 1s94_A 81 EELEELMTDIKRTANKVRGKLKTIELNIEQEE-HSNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARIKR 159 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999997654331 11234456688899999999999999999999999999988888766
Q ss_pred hhhh
Q 024864 90 KQIF 93 (261)
Q Consensus 90 r~~f 93 (261)
.-.+
T Consensus 160 q~~I 163 (180)
T 1s94_A 160 QMEI 163 (180)
T ss_dssp ----
T ss_pred HHHH
Confidence 4333
No 17
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=96.45 E-value=0.032 Score=38.37 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 024864 174 SRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLR 230 (261)
Q Consensus 174 ~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~k 230 (261)
+-.+.+..|...|..|..|-.+++.=|..|..+||+|+..++.+...+..+.+.+.+
T Consensus 7 eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ 63 (66)
T 1n7s_D 7 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 445678899999999999999999999999999999999999999999999887754
No 18
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=96.44 E-value=0.032 Score=40.66 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 024864 172 SQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLR 230 (261)
Q Consensus 172 ~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~k 230 (261)
..+-.+.+..|...|..|..|-.+++.=|..|..+||+|+..++.+...+..+.+.+.+
T Consensus 24 e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ 82 (87)
T 1sfc_D 24 ENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34556778999999999999999999999999999999999999999999999887754
No 19
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=96.16 E-value=0.024 Score=38.88 Aligned_cols=58 Identities=10% Similarity=0.149 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 024864 173 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLR 230 (261)
Q Consensus 173 ~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~k 230 (261)
++-.+.+..|...|..|..|-.+++.=|..|..+||+|+..++.+...+..+.+.+.+
T Consensus 5 ~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~ 62 (65)
T 1gl2_D 5 QEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567889999999999999999999999999999999999999999998877644
No 20
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=96.13 E-value=0.043 Score=36.34 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 024864 188 ELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALL 229 (261)
Q Consensus 188 el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ 229 (261)
|-.++=..-..+++.|||.|+||+.++++...++..|.+.|.
T Consensus 11 ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 11 ESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 333344456668889999999999999999999999998874
No 21
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=95.65 E-value=0.22 Score=35.49 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 024864 178 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALL 229 (261)
Q Consensus 178 ~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ 229 (261)
.+++-.+-+.|--++=.....+.+.|||.|+||+.+++++..++..|.+.|.
T Consensus 24 s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~ 75 (79)
T 1n7s_C 24 STRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLK 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 4444444455555555678888899999999999999999999999998875
No 22
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=95.59 E-value=0.064 Score=39.10 Aligned_cols=58 Identities=14% Similarity=0.226 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 024864 173 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLR 230 (261)
Q Consensus 173 ~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~k 230 (261)
.+-.+.+..|...+..|..|=.+++.=|..|.++||+|+..++.+...+..+++.+.+
T Consensus 26 ~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~k 83 (87)
T 1l4a_D 26 DDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATK 83 (87)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446678899999999999999999999999999999999999999999999887754
No 23
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=95.36 E-value=0.17 Score=34.61 Aligned_cols=57 Identities=14% Similarity=0.107 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 024864 174 SRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLR 230 (261)
Q Consensus 174 ~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~k 230 (261)
+-.+.+.+|...+.-|..|=..++.=|..|-++||+|+..++.+...+..+.+-|.+
T Consensus 7 e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 7 EIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445668888999999999999999999999999999999999999999999887743
No 24
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=94.59 E-value=0.0024 Score=49.53 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 024864 179 LHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDE 216 (261)
Q Consensus 179 i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~ 216 (261)
+.++...+.|+..++.+==.-|.+-||-||.+++..++
T Consensus 35 l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~ 72 (119)
T 2kog_A 35 LQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA 72 (119)
T ss_dssp HHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 55667777777777777777888899998888776554
No 25
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=94.06 E-value=0.64 Score=32.35 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 024864 198 TMVAQQGELAIRIDDNMDESLANVEGARNALLR 230 (261)
Q Consensus 198 ~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~k 230 (261)
.+...|||.|+|||.|++.+..+...|.+.|..
T Consensus 33 ~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~ 65 (70)
T 3b5n_C 33 GMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366789999999999999999999999988853
No 26
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=93.93 E-value=0.24 Score=35.79 Aligned_cols=50 Identities=20% Similarity=0.225 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 024864 179 LHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNAL 228 (261)
Q Consensus 179 i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL 228 (261)
.++.-+-+.|-.+.=..=..+...|||.|+||+.+++....+...|.+.|
T Consensus 29 Trr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L 78 (83)
T 1l4a_C 29 TRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNL 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444445566788999999999999999999888776654
No 27
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=90.06 E-value=3.5 Score=28.75 Aligned_cols=71 Identities=4% Similarity=0.076 Sum_probs=53.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCchH
Q 024864 167 RQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWL 241 (261)
Q Consensus 167 ~~~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~ 241 (261)
+-...+.+-+..|..|..-..+|+.|..+=+.+|..=...++....||+.+...+..|.+. .++.++++|+
T Consensus 7 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~----q~~~rkk~~i 77 (77)
T 1jth_B 7 TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY----QSKARRKKIM 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhcCcccC
Confidence 3455678888889999999999999999999999999999999999999999999999754 3444444553
No 28
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=87.26 E-value=5.2 Score=27.08 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 024864 194 THLATMVAQQGELAIRIDDNMDESLANVEGARNALL 229 (261)
Q Consensus 194 ~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ 229 (261)
.....-.+.|+|.|.+....+.++..++..+.+-|.
T Consensus 26 ~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~ 61 (65)
T 1gl2_C 26 TEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILR 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHH
Confidence 466667789999999999999999999999988774
No 29
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.29 E-value=6.9 Score=30.11 Aligned_cols=68 Identities=19% Similarity=0.151 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024864 11 EIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIK 84 (261)
Q Consensus 11 eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~~~~~~~~~~~~~~~nvv~~L~~kl~~~s~~Fr~~~~~r~~~lk 84 (261)
.|..+...+...+...+..|+.|....+. ...+..+..+....-|...|+++-..|.+++....+..|
T Consensus 52 kl~~~~~~t~~l~k~ts~~lk~L~~~~~~------~~~~~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek 119 (130)
T 2dnx_A 52 NLQQLQHSTNQLAKETNELLKELGSLPLP------LSTSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEK 119 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCC------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555543210 022333445555666666666666677666665555443
No 30
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=78.70 E-value=15 Score=26.81 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 024864 178 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESL 218 (261)
Q Consensus 178 ~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~ 218 (261)
.+.+|...+.|+..|+.+==.-|.+-||-||.++.-.++-.
T Consensus 31 ~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~ 71 (96)
T 1sfc_A 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQ 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 47788888889988888888889999999998887666533
No 31
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=78.51 E-value=15 Score=25.88 Aligned_cols=60 Identities=20% Similarity=0.156 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccC
Q 024864 179 LHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSN 238 (261)
Q Consensus 179 i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~ 238 (261)
+..-.+.+.|=-+|=.....-...|.|.|.+....+.++..++..+.+-|..-.++.-.|
T Consensus 21 L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~n 80 (81)
T 2nps_C 21 LEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQN 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhC
Confidence 333344444444444566667788999999999999999999999999987665554333
No 32
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.80 E-value=19 Score=27.60 Aligned_cols=32 Identities=9% Similarity=0.139 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024864 10 VEIQELTALIKDDITALNMALSDLQTLQNLEI 41 (261)
Q Consensus 10 ~eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~ 41 (261)
.+.+.|+..|...|..++..+..|+++.+.-+
T Consensus 10 ~ef~~l~~~is~~I~~In~~vs~l~r~v~~LG 41 (130)
T 2dnx_A 10 RDFSSIIQTCSGNIQRISQATAQIKNLMSQLG 41 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 47789999999999999999999999887554
No 33
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=72.41 E-value=20 Score=24.36 Aligned_cols=60 Identities=7% Similarity=0.052 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 024864 170 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALL 229 (261)
Q Consensus 170 ~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ 229 (261)
..+..-+..|..|..-..+|+.|..+=+.+|..=...|+....||+.+...+..|.+.-.
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk 65 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQK 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888999999999999999999999999999999999999999999999986543
No 34
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=71.62 E-value=19 Score=23.77 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 024864 178 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDE 216 (261)
Q Consensus 178 ~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~ 216 (261)
.+.++...+.|+..|+.+=-.-|.+-||-||.+....++
T Consensus 3 ~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~ 41 (61)
T 3b5n_A 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADN 41 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 467888999999999998888899999999988776654
No 35
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=64.77 E-value=33 Score=23.99 Aligned_cols=66 Identities=5% Similarity=0.057 Sum_probs=56.4
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 024864 162 QQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNA 227 (261)
Q Consensus 162 ~q~~~~~~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~e 227 (261)
+..+.+-...+..-+..|..|..-..+|+.|..+=+.+|..=...++....||+.+...+..|.+.
T Consensus 13 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~ 78 (83)
T 1sfc_B 13 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566788888999999999999999999999999999999999999999999999988754
No 36
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=64.21 E-value=20 Score=24.58 Aligned_cols=38 Identities=18% Similarity=0.326 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 024864 179 LHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDE 216 (261)
Q Consensus 179 i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~ 216 (261)
+.++...+.|+..|+.+==.-|.+-||-||.+..-.++
T Consensus 10 l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~ 47 (74)
T 2nps_A 10 IKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSES 47 (74)
T ss_dssp SHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44556666677777766666777888888887765554
No 37
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=63.04 E-value=39 Score=24.18 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 024864 167 RQENYSQSRAVALHNVESTITELG 190 (261)
Q Consensus 167 ~~~~~~~~R~~~i~~ie~~i~el~ 190 (261)
++-+.+-+|.+.+..+...-.+|.
T Consensus 23 ~NI~kvL~RgekL~~L~~kt~~L~ 46 (91)
T 3hd7_A 23 VNVDKVLERDQKLSELDDRADALQ 46 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHH
Confidence 455556666666666555555544
No 38
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=60.89 E-value=33 Score=22.65 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 024864 177 VALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLA 219 (261)
Q Consensus 177 ~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~ 219 (261)
..+.++...+.|+..|+.+=-.-|.+-||-||.++.-.++-..
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~ 46 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4578889999999999999889999999999988876655443
No 39
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=57.57 E-value=99 Score=29.41 Aligned_cols=28 Identities=18% Similarity=0.082 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 024864 191 GIFTHLATMVAQQGELAIRIDDNMDESL 218 (261)
Q Consensus 191 ~if~~la~~V~~Qge~idrId~nv~~a~ 218 (261)
+..+-|-.-|.+|-.-|.|+|-.|+...
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdiqi 158 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDIKI 158 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666666666655443
No 40
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=54.73 E-value=44 Score=22.18 Aligned_cols=56 Identities=5% Similarity=0.116 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 024864 170 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGAR 225 (261)
Q Consensus 170 ~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~ 225 (261)
..+..-+..|..|..-..+|+.|..+=+.+|..=...++....||+.+...+.+|.
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566667777777777788888888888887777778888888888877777664
No 41
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=54.02 E-value=52 Score=23.13 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024864 172 SQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQI 235 (261)
Q Consensus 172 ~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~ 235 (261)
++.-.++|.+|.....++.-..+-+...|..+|.+ .|--|+..|...++....+|.|+.+..
T Consensus 15 Iq~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~~~--dis~~l~~a~~~l~~sk~~~~~~~~~~ 76 (80)
T 3n27_A 15 IESTNEAVVKLQETAEKTVYVLTALQDYSGGSGGI--DISIELNKAKSDLEESKEWIRRSNQKL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCC-----CH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--chhhhHhHHHhhHHHHHHHHHHHHHHh
Confidence 34445555555555555555555555566677765 466778899999999999999987754
No 42
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=53.87 E-value=58 Score=23.29 Aligned_cols=62 Identities=10% Similarity=0.279 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 024864 171 YSQSRAVALHNVESTITEL----GGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHL 232 (261)
Q Consensus 171 ~~~~R~~~i~~ie~~i~el----~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~ 232 (261)
|+++|.+.+..|...|..| +++|.-++..-..=...-...+.++.+--..++.....|+|=.
T Consensus 2 ~iqERL~sL~~ID~~i~sLL~~as~~i~tls~~k~~~~~~K~~F~~~t~~fy~tL~~v~v~LrkEI 67 (86)
T 3r84_A 2 YIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEI 67 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999988887655 3444444443321123445566666666666777777776543
No 43
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=53.01 E-value=39 Score=25.26 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=42.8
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 024864 10 VEIQELTALI--KDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKEL 72 (261)
Q Consensus 10 ~eIe~LT~~I--k~~i~~~~~~i~~lq~~~~~~~~~~~~~~~~~~~~~nvv~~L~~kl~~~s~~F 72 (261)
..|+.+-... +..|..|...|..|++..+.... .-..=..+.+.+.+..|+.+|.++...+
T Consensus 45 ~~Ie~~l~~~~~~~~ld~i~~~I~~Lqk~v~das~--fLp~YD~R~~q~~i~~L~~~l~e~r~~l 107 (111)
T 2l3l_A 45 AAVEELLERAESVERLEEAASRLQGLQKLINDSVF--FLAAYDLRQGQEALARLQAALAERRRGL 107 (111)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHSTT--TSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHhh--hccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566664333 55689999999999998875431 2233467788888888888888876554
No 44
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=51.42 E-value=64 Score=24.31 Aligned_cols=64 Identities=11% Similarity=0.266 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024864 170 NYSQSRAVALHNVESTIT----ELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLN 233 (261)
Q Consensus 170 ~~~~~R~~~i~~ie~~i~----el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~ 233 (261)
.|+++|.+.+..|-..|. +++++|.-++.+=.....+=..++.|+.+--..++.+...|+|-.+
T Consensus 4 ~~VqERLdSL~~ID~kl~slL~~~S~~~~t~~elK~g~~~~K~qF~~~~~~fY~~Ls~~a~~LRkEIK 71 (115)
T 4gwp_A 4 PYIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQ 71 (115)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899998887766654 4466666666544444455666788888888888888888887655
No 45
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=51.31 E-value=14 Score=28.01 Aligned_cols=12 Identities=17% Similarity=0.138 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 024864 170 NYSQSRAVALHN 181 (261)
Q Consensus 170 ~~~~~R~~~i~~ 181 (261)
+.+-+|-+.+..
T Consensus 54 dkvLeRGEkLd~ 65 (119)
T 2kog_A 54 DKVLERDQKLSE 65 (119)
T ss_dssp HHHHCCCCSSCC
T ss_pred HHHHHcccHHHH
Confidence 334444443333
No 46
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=51.13 E-value=53 Score=22.03 Aligned_cols=58 Identities=3% Similarity=0.035 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 024864 169 ENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARN 226 (261)
Q Consensus 169 ~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~ 226 (261)
...+.+-+..|..|..-..+|+.|..+=+.+|..=...++....||+.+...+.+|.+
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 9 HQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777777777777777777777777777777777777777754
No 47
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=48.56 E-value=66 Score=22.42 Aligned_cols=62 Identities=23% Similarity=0.363 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024864 11 EIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENI 83 (261)
Q Consensus 11 eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~~~~~~~~~~~~~~~nvv~~L~~kl~~~s~~Fr~~~~~r~~~l 83 (261)
..+....-|.+.|......|.++|..++.+. ..-..++..|...+..+|..++++. .|+..+
T Consensus 13 sFN~A~~~i~~g~~tts~AL~kiQdVVN~q~----------~aL~~L~~qL~~NFgAISssi~dIy-~RLd~l 74 (77)
T 2bez_C 13 QFNKAISQIQESLTTTSTALGKLQDVVNQNA----------QALNTLVKQLSSNFGAISSVLNDIL-SRLDKV 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhhHHHHHHHHHH-HHHHhh
Confidence 5567778888999999999999999887543 3445677888889999999988883 455544
No 48
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=44.41 E-value=21 Score=20.22 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=12.6
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 024864 239 RWLMIKIFAVIIFFLTVFMFF 259 (261)
Q Consensus 239 r~~~~~i~~vl~i~~~~~~~~ 259 (261)
+-+++-+.++||.++++++++
T Consensus 6 qELf~NFt~vLI~vlLi~llV 26 (31)
T 1jdm_A 6 RELFLNFTIVLITVILMWLLV 26 (31)
T ss_dssp SSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666667776653
No 49
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=42.94 E-value=1.2e+02 Score=23.94 Aligned_cols=31 Identities=13% Similarity=0.292 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024864 9 IVEIQELTALIKDDITALNMALSDLQTLQNL 39 (261)
Q Consensus 9 ~~eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~ 39 (261)
+.+.-..+..|+..|..++..+..|+.....
T Consensus 4 ~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~ 34 (196)
T 1fio_A 4 FVGFMNKISQINRDLDKYDHTINQVDSLHKR 34 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778889999999999999999887654
No 50
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=42.49 E-value=73 Score=21.19 Aligned_cols=57 Identities=5% Similarity=0.070 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 024864 169 ENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGAR 225 (261)
Q Consensus 169 ~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~ 225 (261)
...+..-+..|..|..-..+|+.|..+=+.+|..=...++....||+.+...+.+|.
T Consensus 11 ~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 11 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666667777777777777777777777777777777777777777766653
No 51
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=39.12 E-value=76 Score=21.95 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 024864 179 LHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDE 216 (261)
Q Consensus 179 i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~ 216 (261)
+.++...+.|+..|+.+=-.-|.+-||-||.+++-.++
T Consensus 17 l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~ 54 (80)
T 1l4a_A 17 LQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADA 54 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 56677777788888888777888999999988776654
No 52
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=35.20 E-value=1.7e+02 Score=23.26 Aligned_cols=51 Identities=12% Similarity=0.201 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 024864 171 YSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANV 221 (261)
Q Consensus 171 ~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v 221 (261)
+=+.+....+.|......++.+-..|-.|+..|.+.|.++|..|.....-|
T Consensus 48 leeTK~Ya~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~v 98 (159)
T 3p8c_F 48 LEETKAYTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTV 98 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566788999999999999999999999999999999999998655443
No 53
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=34.91 E-value=99 Score=20.53 Aligned_cols=40 Identities=8% Similarity=0.231 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 024864 179 LHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESL 218 (261)
Q Consensus 179 i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~ 218 (261)
+..+...+.|+..++.+=-.-|.+-|+-|+.++.-.++-.
T Consensus 6 i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~ 45 (63)
T 1urq_A 6 IEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMM 45 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888889999988899999999998887766643
No 54
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=33.65 E-value=1.2e+02 Score=21.04 Aligned_cols=46 Identities=15% Similarity=0.165 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 024864 179 LHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 224 (261)
Q Consensus 179 i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g 224 (261)
|..||..+.-.-....+|+..|..|...||++...+..-...+...
T Consensus 16 i~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 16 LVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666666666777777789999999999988877666655443
No 55
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=33.31 E-value=45 Score=20.89 Aligned_cols=12 Identities=25% Similarity=0.728 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 024864 247 AVIIFFLTVFMF 258 (261)
Q Consensus 247 ~vl~i~~~~~~~ 258 (261)
+++|.+++++|+
T Consensus 37 lilicllli~ii 48 (52)
T 1fjk_A 37 LILIFLLLICII 48 (52)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333334444443
No 56
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=32.79 E-value=2.5e+02 Score=24.48 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 024864 170 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 224 (261)
Q Consensus 170 ~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g 224 (261)
..+.+-...+..|...+.++...+.+++..+.+|...++.|..++++...-++..
T Consensus 220 ~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~ 274 (341)
T 3zx6_A 220 TLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQN 274 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556678888899999999999999999999999988888877665544443
No 57
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=31.46 E-value=2.2e+02 Score=23.50 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 024864 171 YSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 224 (261)
Q Consensus 171 ~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g 224 (261)
.+.+-...+..|...+.++..++.+++..+.+|...++.|..++++...-++..
T Consensus 141 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~ 194 (227)
T 1qu7_A 141 LVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQN 194 (227)
T ss_dssp HHHHHTTHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455577888888899999999999999999999999888877755544443
No 58
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=28.59 E-value=69 Score=18.55 Aligned_cols=11 Identities=36% Similarity=0.540 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 024864 249 IIFFLTVFMFF 259 (261)
Q Consensus 249 l~i~~~~~~~~ 259 (261)
+.+.+++|.+|
T Consensus 12 ~tlgiiFFAI~ 22 (32)
T 3arc_T 12 CIIALFFFAIF 22 (32)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 33333444444
No 59
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=26.36 E-value=1.4e+02 Score=19.62 Aligned_cols=41 Identities=15% Similarity=0.249 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 024864 177 VALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDES 217 (261)
Q Consensus 177 ~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a 217 (261)
..+.++...+.|+..|+.+==.-|.+-||-||.+....++-
T Consensus 9 d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L 49 (65)
T 1gl2_A 9 DRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDL 49 (65)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34677788888888888887778888999888887665543
No 60
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=26.29 E-value=3.7e+02 Score=24.40 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024864 12 IQELTALIKDDITALNMALSDLQT 35 (261)
Q Consensus 12 Ie~LT~~Ik~~i~~~~~~i~~lq~ 35 (261)
|.+....|+..|..|...|..+++
T Consensus 58 Ldk~er~~~~rIe~L~~~L~~~s~ 81 (390)
T 1deq_A 58 IDEVDQDFTSRINKLRDSLFNYQK 81 (390)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHH
Confidence 444556666666667666666655
No 61
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=25.24 E-value=2.7e+02 Score=22.55 Aligned_cols=67 Identities=4% Similarity=0.064 Sum_probs=46.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024864 165 VPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRH 231 (261)
Q Consensus 165 ~~~~~~~~~~R~~~i~~ie~~i~el~~if~~la~~V~~Qge~idrId~nv~~a~~~v~~g~~eL~ka 231 (261)
+......+.+-...|..|...+.+++.+-.+-+.++.+=...|+.+-.+++.+...+..|...-.++
T Consensus 207 i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~ 273 (279)
T 3c98_B 207 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKA 273 (279)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566788888899999999999999999999998888889999999999999999887554433
No 62
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=24.48 E-value=1.5e+02 Score=21.37 Aligned_cols=40 Identities=8% Similarity=0.191 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 024864 50 RVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESR 89 (261)
Q Consensus 50 ~~~~~~nvv~~L~~kl~~~s~~Fr~~~~~r~~~lk~~~~R 89 (261)
....+..++..+---+.++-..+|.....+++.+|..-.+
T Consensus 57 ~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~ 96 (102)
T 2qyw_A 57 KQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAK 96 (102)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777778888888888888888888776544
No 63
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=23.82 E-value=2e+02 Score=20.54 Aligned_cols=54 Identities=15% Similarity=0.235 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024864 10 VEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQ 73 (261)
Q Consensus 10 ~eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~~~~~~~~~~~~~~~nvv~~L~~kl~~~s~~Fr 73 (261)
.+++....+|..++..+...|.-+++. ...+...+...|..|..++..+...|.
T Consensus 39 ~El~~~l~el~e~l~DL~~SI~i~e~~----------~~~EI~~Rk~~v~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 39 EEIQDILKDVEETIVDLDRSIIVMKRD----------ENEDVSGREAQVKNIKQQLDALKLRFD 92 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS----------TTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466666666666666666666665531 345677888888888888888777663
No 64
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=22.82 E-value=2.7e+02 Score=21.68 Aligned_cols=66 Identities=21% Similarity=0.325 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024864 11 EIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHE 87 (261)
Q Consensus 11 eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~~~~~~~~~~~~~~~nvv~~L~~kl~~~s~~Fr~~~~~r~~~lk~~~ 87 (261)
..+.....+...|......+.++|..++.+. ..-...+..|...|..+|..+.++ ..|+..+.+..
T Consensus 26 sFN~A~~~~~~g~~tts~AL~kiQ~VVN~q~----------~aL~~l~~qL~~nFgAISssi~dI-y~rLd~leAda 91 (149)
T 1wyy_A 26 QFNKAISQIQESLTTTSTALGKLQDVVNQNA----------QALNTLVKQLSSNFGAISSVLNDI-LSRLDKVEAEV 91 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHH
Confidence 4566677888889999999999998876543 344567788899999999999988 45777776653
No 65
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=22.78 E-value=2.5e+02 Score=21.24 Aligned_cols=61 Identities=8% Similarity=0.146 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--h-cCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 024864 10 VEIQELTALIKDDITALNMALSDLQTLQNLEI--V-EGNYSQDRVVHSTTVCDDLKSKLMGATK 70 (261)
Q Consensus 10 ~eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~~--~-~~~~~~~~~~~~~nvv~~L~~kl~~~s~ 70 (261)
.++..++.+++..+..+...|..|++...--. + ..+-+..+..-+...|..++.++.++-.
T Consensus 63 ~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~ 126 (130)
T 4dnd_A 63 EELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKD 126 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888888888888887554211 0 0122345666677777777777776654
No 66
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=21.51 E-value=1.5e+02 Score=19.65 Aligned_cols=29 Identities=0% Similarity=-0.333 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHH-HhccCchHHHHHH
Q 024864 218 LANVEGARNALLRHLN-QISSNRWLMIKIF 246 (261)
Q Consensus 218 ~~~v~~g~~eL~ka~~-~~~~~r~~~~~i~ 246 (261)
..+..+...|++|-.= .++.....-+.++
T Consensus 5 ~~f~~~v~~ElkKV~WPtr~e~~~~T~vVi 34 (65)
T 3din_D 5 RKFFREVIAEAKKISWPSRKELLTSFGVVL 34 (65)
T ss_dssp -----CHHHHHHHHHHHHCCCCCTTHHHHH
T ss_pred HHHHHHHHHHHhcccCcCHHHHHhHHHHHH
Confidence 4566777888877532 3333333333333
No 67
>1wdg_A E2 glycoprotein; MHV, coronavirus, heptad repeat, fusion core, viral entry, V protein; 2.06A {Murine hepatitis virus} SCOP: h.3.3.1 PDB: 1wdf_A
Probab=20.39 E-value=2.4e+02 Score=20.04 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024864 11 EIQELTALIKDDITALNMALSDLQTLQNLE 40 (261)
Q Consensus 11 eIe~LT~~Ik~~i~~~~~~i~~lq~~~~~~ 40 (261)
..+....-|+..|...+..|.++|..++.+
T Consensus 8 SFNkAignIq~aF~avn~AL~KIQdVVN~Q 37 (94)
T 1wdg_A 8 AFNNALGAIQDGFDATNSALGKIQSVVNAN 37 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667778888888888888776644
Done!