BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024865
(261 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense
GN=glnD PE=3 SV=1
Length = 933
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 84 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 143
V IDN+ S HT++++ +D GLLYD+ R L + +Q+S + S G ID+F ++
Sbjct: 847 VLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKIS--TYGEKAIDVFYVK 904
Query: 144 -ADGKKIVDPSKQNGLSSRLWMELLQP 169
G K+ +K + RL L P
Sbjct: 905 DVFGLKVTHENKLAQIRERLLHALADP 931
>sp|B9JZI2|GLND_AGRVS [Protein-PII] uridylyltransferase OS=Agrobacterium vitis (strain S4
/ ATCC BAA-846) GN=glnD PE=3 SV=1
Length = 941
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 84 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IM 142
VTI NSLS T+++I C D GLL ++ L D ++ + R + G ID F ++
Sbjct: 828 VTISNSLSNKFTVIEIECLDRIGLLAEVTAVLADLSLDIHSARIT--TFGEKVIDTFYVI 885
Query: 143 QADGKKIVDPSKQNGLSSRL 162
G+KI + ++Q +S RL
Sbjct: 886 DLVGQKITNENRQGSISVRL 905
>sp|Q8UIF1|GLND_AGRT5 [Protein-PII] uridylyltransferase OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=glnD PE=3 SV=1
Length = 942
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 83 SVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-I 141
SVTI N LS T++++ C D GLL D+ + D ++ + R + G ID F +
Sbjct: 828 SVTISNGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARIT--TFGEKVIDTFYV 885
Query: 142 MQADGKKIVDPSKQNGLSSRL 162
G+K+ + ++Q ++ RL
Sbjct: 886 TDLFGQKVTNDNRQASIAQRL 906
>sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase OS=Rhizobium leguminosarum bv.
viciae GN=glnD PE=3 SV=2
Length = 944
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 83 SVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-I 141
SV I NSLS T++++ C D GLL +I L D ++ + R + G ID F +
Sbjct: 826 SVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARIT--TFGEKVIDTFYV 883
Query: 142 MQADGKKIVDPSKQNGLSSRL 162
G+KI SK+ +++R+
Sbjct: 884 TDLVGQKISGDSKRANITARM 904
>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain
ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1
Length = 936
Score = 41.6 bits (96), Expect = 0.006, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 15/111 (13%)
Query: 56 LPSAIIDMLHLDMPVE---------LPSGS--LTCSNVSVTIDNSLSPGHTLVQIVCQDH 104
L + D+L D+P+E LP + LT V +DN S HT+++I +D
Sbjct: 790 LAKTVRDVLTGDLPLEKALRRQPPRLPERTRHLTVPP-RVIVDNQASKTHTVIEINGRDR 848
Query: 105 KGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IMQADGKKIVDPSK 154
G LY + R L D +Q+S R S G +D F + G KIV +K
Sbjct: 849 PGFLYAVTRALTDVAVQISSARVS--TYGERVVDSFYVKDVFGMKIVHRAK 897
>sp|Q53245|GLND_RHITR [Protein-PII] uridylyltransferase OS=Rhizobium tropici GN=glnD PE=3
SV=2
Length = 948
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 83 SVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM 142
SV I NSLS T++++ C D GLL +I L D ++ + R + G ID F +
Sbjct: 827 SVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARIT--TFGEKVIDTFYV 884
Query: 143 QAD--GKKIVDPSKQNGLSSRL 162
AD G+KI + +++ +++RL
Sbjct: 885 -ADLVGQKISNENRRAYITARL 905
>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain
621H) GN=glnD PE=3 SV=1
Length = 949
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 84 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IM 142
V IDN+ S HT++++ +D GLL+D+ L ++Q+S + G +D+F +
Sbjct: 858 VVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHIT--TYGMRAVDVFYVR 915
Query: 143 QADGKKIVDPSKQNGLSSRLWMEL 166
G KI DP + L L L
Sbjct: 916 DLLGMKITDPVRLARLRETLLASL 939
Score = 35.0 bits (79), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 63/167 (37%), Gaps = 31/167 (18%)
Query: 93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDP 152
G T + ++C DH GL I L + R G ++ +G +P
Sbjct: 754 GVTELTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQDGEGCSFEEP 813
Query: 153 SK--------QNGLSSRL----------------WMELLQ-PLRVTVVSRGPDTELLVAN 187
+ + LS RL M + P RV + + D ++
Sbjct: 814 HQLGRLNHLVEQALSGRLDIRKGIEDASHHSTSRRMRAIHVPPRVVIDNTASDRHTVI-- 871
Query: 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRV 234
E++G+ RP + HD+T AL + I SA I + G R +V+ V
Sbjct: 872 --EVNGRDRPGLLHDVTSALSSASLQISSAHITTY--GMRAVDVFYV 914
>sp|B4RC79|GLND_PHEZH [Protein-PII] uridylyltransferase OS=Phenylobacterium zucineum
(strain HLK1) GN=glnD PE=3 SV=1
Length = 938
Score = 38.5 bits (88), Expect = 0.048, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 83 SVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-I 141
+V +DN S T+V+ +D GLL + RT+ D + + G +D F +
Sbjct: 832 AVMLDNEASETSTVVEASGRDRPGLLAALARTISDAGLSILSAHID--GYGERAVDAFYV 889
Query: 142 MQADGKKIVDPSKQN 156
+ ADG+K+ D K+N
Sbjct: 890 VDADGRKLTDARKRN 904
>sp|Q87MD6|GLND_VIBPA [Protein-PII] uridylyltransferase OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=glnD PE=3 SV=1
Length = 874
Score = 37.4 bits (85), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 81 NVSVTIDNSLSPG--HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEID 138
NV +D + G HTL++ V D GLL + RT D NI + + + G D
Sbjct: 783 NVKTKVDFLPTKGKKHTLMEFVALDTPGLLAKVGRTFADLNINLHGAKIT--TIGERAED 840
Query: 139 LFIMQADGKKIVDPSKQNGLSSRL 162
LFI+ ++ + +QN L +L
Sbjct: 841 LFILTSEAGGRLSEEQQNELRDKL 864
>sp|Q9AC53|GLND_CAUCR [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=glnD PE=3 SV=1
Length = 940
Score = 37.0 bits (84), Expect = 0.15, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 83 SVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM 142
SVTIDN S T+V+ +D GLL+ + +TL D + + G +D F +
Sbjct: 835 SVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHID--GYGERAVDAFYV 892
Query: 143 Q-ADGKKIVDPSK 154
Q +G K+ D K
Sbjct: 893 QTTEGGKVTDTRK 905
>sp|B8GWX0|GLND_CAUCN [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
NA1000 / CB15N) GN=glnD PE=3 SV=1
Length = 940
Score = 37.0 bits (84), Expect = 0.15, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 83 SVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM 142
SVTIDN S T+V+ +D GLL+ + +TL D + + G +D F +
Sbjct: 835 SVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHID--GYGERAVDAFYV 892
Query: 143 Q-ADGKKIVDPSK 154
Q +G K+ D K
Sbjct: 893 QTTEGGKVTDTRK 905
>sp|P56884|GLND_RHIME [Protein-PII] uridylyltransferase OS=Rhizobium meliloti (strain
1021) GN=glnD PE=3 SV=1
Length = 949
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 84 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IM 142
VTI N+LS T++++ D GLL ++ L D ++ ++ + G ID F +
Sbjct: 833 VTISNTLSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHIT--TFGEKVIDTFYVT 890
Query: 143 QADGKKIVDPSKQNGLSSRL 162
G KI ++Q +++RL
Sbjct: 891 DLVGSKITSENRQMNIAARL 910
>sp|A6U5G1|GLND_SINMW [Protein-PII] uridylyltransferase OS=Sinorhizobium medicae (strain
WSM419) GN=glnD PE=3 SV=1
Length = 949
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 84 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IM 142
VTI N+LS T++++ D GLL ++ L D ++ ++ + G ID F +
Sbjct: 833 VTISNALSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHIT--TFGEKVIDTFYVT 890
Query: 143 QADGKKIVDPSKQNGLSSRL 162
G KI ++Q +++RL
Sbjct: 891 DLVGSKITSENRQMNIAARL 910
>sp|Q89VX9|GLND_BRAJA [Protein-PII] uridylyltransferase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=glnD PE=3 SV=2
Length = 929
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 84 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGR---FSRRQRGNCEIDLF 140
VTI+N S +T++++ D GLLY++ + N+ ++ F R R D+F
Sbjct: 838 VTINNQWSDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERAR-----DVF 892
Query: 141 -IMQADGKKIVDPSKQNGLSSRL 162
+ G +I P++Q+ + S L
Sbjct: 893 YVTDLLGAQINAPTRQSAIKSAL 915
>sp|Q3SWE0|GLND_NITWN [Protein-PII] uridylyltransferase OS=Nitrobacter winogradskyi
(strain Nb-255 / ATCC 25391) GN=glnD PE=3 SV=1
Length = 925
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 84 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGR---FSRRQRGNCEIDLF 140
VTI+N S HT++++ D GLL+ + + N+ ++ F R R D+F
Sbjct: 837 VTINNQWSDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERAR-----DVF 891
Query: 141 -IMQADGKKIVDPSKQNGLSSRL 162
+ G +I P++Q + L
Sbjct: 892 YVTDLLGARITAPTRQAAIKRAL 914
>sp|Q3J5H6|GLND_RHOS4 [Protein-PII] uridylyltransferase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=glnD PE=3 SV=1
Length = 930
Score = 34.7 bits (78), Expect = 0.67, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 84 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVS 123
+ DN S +T++++ +D GLLYD+ RTL NI ++
Sbjct: 840 IAFDNEGSDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIA 879
>sp|Q5LWE5|GLND_RUEPO [Protein-PII] uridylyltransferase OS=Ruegeria pomeroyi (strain ATCC
700808 / DSM 15171 / DSS-3) GN=glnD PE=3 SV=1
Length = 908
Score = 34.7 bits (78), Expect = 0.67, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 84 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IM 142
+T DN S +T++++ +D GLLYD+ R L N+ ++ + G +D F +
Sbjct: 817 ITFDNEGSDIYTIIEVDTRDRPGLLYDLARALAAANVYIANAVIA--TYGEQVVDSFYVK 874
Query: 143 QADGKKIVDPSKQNGLSSRL 162
G K +KQ L ++L
Sbjct: 875 DMFGLKYHSEAKQRTLETKL 894
>sp|A4YKP3|GLND_BRASO [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
ORS278) GN=glnD PE=3 SV=1
Length = 931
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 84 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGR---FSRRQRGNCEIDLF 140
V+I+N S +T++++ D GLLY++ + N+ ++ F R R D+F
Sbjct: 839 VSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERAR-----DVF 893
Query: 141 -IMQADGKKIVDPSKQNGLSSRL 162
+ G +I P++Q + S L
Sbjct: 894 YVTDLLGAQINAPTRQAAIKSAL 916
>sp|A5ETJ9|GLND_BRASB [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
BTAi1 / ATCC BAA-1182) GN=glnD PE=3 SV=1
Length = 931
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 84 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGR---FSRRQRGNCEIDLF 140
V+I+N S +T++++ D GLLY++ + N+ ++ F R R D+F
Sbjct: 839 VSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERAR-----DVF 893
Query: 141 -IMQADGKKIVDPSKQNGLSSRL 162
+ G +I P++Q + S L
Sbjct: 894 YVTDLLGAQINAPTRQAAIKSAL 916
>sp|C1CY24|COAD_DEIDV Phosphopantetheine adenylyltransferase OS=Deinococcus deserti
(strain VCD115 / DSM 17065 / LMG 22923) GN=coaD PE=3
SV=1
Length = 170
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 81 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF 140
NVSV S G LV + Q+HKG++ +R + DY ++ + RQ G E +F
Sbjct: 64 NVSVD-----SFGGLLVDYMAQEHKGIIIRGLRAVSDYEYELQIAHLN-RQIGEVET-VF 116
Query: 141 IMQADGKKIVDPSKQNGLSS 160
IM A V S ++S
Sbjct: 117 IMAATRWSFVSSSMVREIAS 136
>sp|Q1I624|GLND_PSEE4 [Protein-PII] uridylyltransferase OS=Pseudomonas entomophila
(strain L48) GN=glnD PE=3 SV=1
Length = 900
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Query: 83 SVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM 142
VTI N T+++I D GLL I R +++I + + + E FI
Sbjct: 803 QVTILNDAQRPVTILEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGE-RVEDVFFIT 861
Query: 143 QADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRG 178
AD + + DP L SRL ++Q L+ S
Sbjct: 862 DADNQPLSDPQ----LCSRLQEAIIQQLQAGQASEA 893
>sp|Q48D33|EFG_PSE14 Elongation factor G OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=fusA PE=3 SV=1
Length = 701
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 75 GSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGR--FSRRQR 132
G L + S + G T++ + + H +L D MR +++N++ + G+ S R+R
Sbjct: 437 GKLAQEDPSFRVKTDEETGQTIISGMGELHLDILVDRMR--REFNVEANIGKPQVSYRER 494
Query: 133 --GNCEID-LFIMQADGK 147
NCEI+ F+ Q+ G+
Sbjct: 495 ITKNCEIEGKFVRQSGGR 512
>sp|Q889X4|EFG_PSESM Elongation factor G OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=fusA PE=3 SV=1
Length = 701
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 75 GSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGR--FSRRQR 132
G L + S + G T++ + + H +L D MR +++N++ + G+ S R+R
Sbjct: 437 GKLAQEDPSFRVKTDEETGQTIISGMGELHLDILVDRMR--REFNVEANIGKPQVSYRER 494
Query: 133 --GNCEID-LFIMQADGK 147
NCEI+ F+ Q+ G+
Sbjct: 495 ITKNCEIEGKFVRQSGGR 512
>sp|Q3K5Y5|EFG_PSEPF Elongation factor G OS=Pseudomonas fluorescens (strain Pf0-1)
GN=fusA PE=3 SV=1
Length = 701
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 75 GSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGR--FSRRQR 132
G L + S + G T++ + + H +L D MR +++N++ + G+ S R+R
Sbjct: 437 GKLAQEDPSFRVKTDEETGQTIISGMGELHLDILVDRMR--REFNVEANIGKPQVSYRER 494
Query: 133 --GNCEID-LFIMQADGK 147
NCEI+ F+ Q+ G+
Sbjct: 495 ITKNCEIEGKFVRQSGGR 512
>sp|Q65U07|GLO2_MANSM Hydroxyacylglutathione hydrolase OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=gloB PE=3 SV=1
Length = 236
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 38 DVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLV 97
D+ + G TA A+ + I H + V +PSG T ++VS IDN L G TL
Sbjct: 70 DIPVYGPAETADKGATHIVNEGNIQTAHYRIEV-VPSGGHTANHVSYLIDNHLFCGDTLF 128
Query: 98 QIVC 101
C
Sbjct: 129 SAGC 132
>sp|Q4ZMP1|EFG_PSEU2 Elongation factor G OS=Pseudomonas syringae pv. syringae (strain
B728a) GN=fusA PE=3 SV=1
Length = 701
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 75 GSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGR--FSRRQR 132
G L + S + G T++ + + H +L D MR +++N++ + G+ S R+R
Sbjct: 437 GKLAQEDPSFRVKTDEETGQTIISGMGELHLDILVDRMR--REFNVEANIGKPQVSYRER 494
Query: 133 --GNCEID-LFIMQADGK 147
NCEI+ F+ Q+ G+
Sbjct: 495 ITKNCEIEGKFVRQSGGR 512
>sp|C3K2X9|EFG_PSEFS Elongation factor G OS=Pseudomonas fluorescens (strain SBW25)
GN=fusA PE=3 SV=1
Length = 701
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 75 GSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGR--FSRRQR 132
G L + S + G T++ + + H +L D MR +++N++ + G+ S R+R
Sbjct: 437 GKLAQEDPSFRVKTDEETGQTIISGMGELHLDILVDRMR--REFNVEANIGKPQVSYRER 494
Query: 133 --GNCEID-LFIMQADGK 147
NCEI+ F+ Q+ G+
Sbjct: 495 ITKNCEIEGKFVRQSGGR 512
>sp|B1JBR2|GLND_PSEPW [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
W619) GN=glnD PE=3 SV=1
Length = 900
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
Query: 83 SVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM 142
VTI N T+++I D GLL I R ++++ + + + E FI
Sbjct: 803 QVTILNDAQRAVTILEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGE-RVEDVFFIT 861
Query: 143 QADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTEL 183
AD + + DP L SRL ++Q L+ S T +
Sbjct: 862 DADNQPLSDPQ----LCSRLQEAIVQQLQAGQASDASPTRV 898
>sp|Q3AQF7|Y1513_CHLCH UPF0758 protein Cag_1513 OS=Chlorobium chlorochromatii (strain
CaD3) GN=Cag_1513 PE=3 SV=1
Length = 222
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 25 HLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVE-LPSGSLTCSNVS 83
HL T N +I ++ +GT TA SAI + H + V PSG + SN
Sbjct: 127 HLNT--KNQVIKNELISIGTLNTAVIHPREIFKSAIRESAHSIIVVHNHPSGDVNPSNAD 184
Query: 84 VTIDNSLSPGHTLVQIVCQDH 104
I N L +QI DH
Sbjct: 185 KKITNELKQAGAFMQIEMLDH 205
>sp|A4VJR9|GLND_PSEU5 [Protein-PII] uridylyltransferase OS=Pseudomonas stutzeri (strain
A1501) GN=glnD PE=3 SV=1
Length = 900
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 83 SVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM 142
VTI N T+++I+ D GLL + + D+++ V + + E F+
Sbjct: 803 QVTIHNDTQRPQTILEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATLGE-RVEDVFFVT 861
Query: 143 QADGKKIVDPS 153
AD + + DP
Sbjct: 862 DADNQPLSDPQ 872
>sp|Q98C27|GLND_RHILO [Protein-PII] uridylyltransferase OS=Rhizobium loti (strain
MAFF303099) GN=glnD PE=3 SV=1
Length = 933
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 86 IDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IMQA 144
I N+LS +++++ D GLL +I TL D ++ ++ + G ID F +
Sbjct: 838 IRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHIT--TFGEKVIDTFYVTDL 895
Query: 145 DGKKIVDPSKQNGLSSRLWMEL 166
G+KI P++ + +RL L
Sbjct: 896 TGQKIDSPARIATIRNRLMATL 917
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,308,247
Number of Sequences: 539616
Number of extensions: 4079596
Number of successful extensions: 8770
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 8745
Number of HSP's gapped (non-prelim): 47
length of query: 261
length of database: 191,569,459
effective HSP length: 115
effective length of query: 146
effective length of database: 129,513,619
effective search space: 18908988374
effective search space used: 18908988374
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)