Query 024865
Match_columns 261
No_of_seqs 245 out of 1328
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 08:00:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024865.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024865hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01759 glnD PII uridylyl-tra 100.0 1.7E-33 3.6E-38 285.6 23.8 171 79-255 662-851 (854)
2 PRK05007 PII uridylyl-transfer 100.0 7.6E-33 1.6E-37 281.7 24.1 172 80-257 687-878 (884)
3 COG2844 GlnD UTP:GlnB (protein 100.0 7E-30 1.5E-34 249.5 19.4 173 79-257 669-861 (867)
4 TIGR01693 UTase_glnD [Protein- 100.0 2.7E-29 5.8E-34 255.6 24.2 172 81-257 655-849 (850)
5 PRK00275 glnD PII uridylyl-tra 100.0 5.7E-29 1.2E-33 253.5 24.5 174 81-259 688-887 (895)
6 PRK04374 PII uridylyl-transfer 100.0 1.2E-28 2.5E-33 250.1 24.2 169 81-257 676-866 (869)
7 PRK05092 PII uridylyl-transfer 100.0 3.1E-27 6.6E-32 242.3 24.9 175 80-259 718-916 (931)
8 PRK03059 PII uridylyl-transfer 100.0 2.1E-27 4.6E-32 241.1 23.0 171 81-257 665-854 (856)
9 PRK03381 PII uridylyl-transfer 100.0 8.3E-27 1.8E-31 234.7 23.4 165 81-258 587-773 (774)
10 cd04895 ACT_ACR_1 ACT domain-c 99.9 1.8E-21 3.9E-26 140.0 10.0 69 187-259 2-70 (72)
11 cd04897 ACT_ACR_3 ACT domain-c 99.9 3E-21 6.5E-26 139.9 9.7 67 187-257 2-72 (75)
12 PRK01759 glnD PII uridylyl-tra 99.9 1E-20 2.2E-25 192.6 15.7 135 1-167 719-854 (854)
13 PRK05007 PII uridylyl-transfer 99.8 1.8E-20 3.9E-25 191.3 16.2 137 1-168 743-880 (884)
14 PRK00275 glnD PII uridylyl-tra 99.8 2.6E-20 5.6E-25 190.3 16.9 141 1-170 746-889 (895)
15 cd04897 ACT_ACR_3 ACT domain-c 99.8 5.9E-20 1.3E-24 133.1 10.9 73 94-168 1-74 (75)
16 cd04896 ACT_ACR-like_3 ACT dom 99.8 6.5E-20 1.4E-24 132.9 9.4 69 187-258 1-73 (75)
17 PRK04374 PII uridylyl-transfer 99.8 4.9E-19 1.1E-23 180.1 16.8 135 1-167 732-867 (869)
18 cd04896 ACT_ACR-like_3 ACT dom 99.8 2.4E-19 5.3E-24 129.9 10.3 75 95-169 1-75 (75)
19 PRK03059 PII uridylyl-transfer 99.8 6.5E-19 1.4E-23 179.3 16.5 136 1-167 720-855 (856)
20 cd04895 ACT_ACR_1 ACT domain-c 99.8 4.2E-19 9E-24 127.8 10.4 68 94-163 1-69 (72)
21 COG2844 GlnD UTP:GlnB (protein 99.8 1.2E-18 2.5E-23 171.2 14.1 136 1-167 726-862 (867)
22 PRK05092 PII uridylyl-transfer 99.8 1.1E-17 2.5E-22 172.0 17.6 141 1-169 774-917 (931)
23 TIGR01693 UTase_glnD [Protein- 99.8 1.3E-17 2.9E-22 170.2 16.0 138 1-166 710-849 (850)
24 cd04900 ACT_UUR-like_1 ACT dom 99.8 9.2E-18 2E-22 121.3 10.6 72 94-166 1-73 (73)
25 cd04927 ACT_ACR-like_2 Second 99.7 2.7E-17 5.8E-22 120.0 10.9 71 96-168 2-73 (76)
26 cd04925 ACT_ACR_2 ACT domain-c 99.7 4.7E-17 1E-21 118.1 10.4 72 95-168 1-74 (74)
27 PRK03381 PII uridylyl-transfer 99.7 1.4E-16 3E-21 160.9 15.5 133 1-163 640-773 (774)
28 cd04928 ACT_TyrKc Uncharacteri 99.6 4.8E-15 1E-19 105.4 9.9 65 95-166 2-67 (68)
29 PRK11589 gcvR glycine cleavage 99.6 6.1E-14 1.3E-18 119.3 16.4 157 92-258 6-170 (190)
30 cd04925 ACT_ACR_2 ACT domain-c 99.6 1.8E-14 4E-19 104.4 10.0 69 187-259 1-74 (74)
31 cd04927 ACT_ACR-like_2 Second 99.6 2.7E-14 5.8E-19 104.1 10.1 67 188-257 2-71 (76)
32 cd04900 ACT_UUR-like_1 ACT dom 99.5 8.8E-14 1.9E-18 100.4 9.8 55 188-245 3-57 (73)
33 cd04926 ACT_ACR_4 C-terminal 99.5 2.1E-13 4.6E-18 98.2 10.2 67 94-163 1-68 (72)
34 cd04898 ACT_ACR-like_4 ACT dom 99.5 5.7E-14 1.2E-18 99.9 4.4 73 187-260 1-77 (77)
35 cd04899 ACT_ACR-UUR-like_2 C-t 99.4 2.1E-12 4.6E-17 91.7 10.2 69 95-166 1-70 (70)
36 PRK00227 glnD PII uridylyl-tra 99.4 6.6E-12 1.4E-16 125.0 15.3 143 95-259 547-692 (693)
37 cd04926 ACT_ACR_4 C-terminal 99.2 9.2E-11 2E-15 84.4 9.8 66 187-257 2-67 (72)
38 cd04873 ACT_UUR-ACR-like ACT d 99.1 7.9E-10 1.7E-14 77.9 10.2 69 95-166 1-70 (70)
39 cd04899 ACT_ACR-UUR-like_2 C-t 99.1 6.9E-10 1.5E-14 78.6 9.7 65 187-255 1-68 (70)
40 COG2716 GcvR Glycine cleavage 99.0 3.5E-09 7.6E-14 87.4 9.0 122 92-223 3-127 (176)
41 cd04928 ACT_TyrKc Uncharacteri 98.9 1.2E-08 2.5E-13 72.7 8.4 65 188-257 3-67 (68)
42 cd04873 ACT_UUR-ACR-like ACT d 98.8 4.8E-08 1E-12 68.6 9.6 65 188-256 2-69 (70)
43 PF01842 ACT: ACT domain; Int 98.6 6.6E-07 1.4E-11 62.0 9.9 64 95-165 1-64 (66)
44 PF13740 ACT_6: ACT domain; PD 98.5 1.4E-06 2.9E-11 63.3 9.7 65 94-166 2-66 (76)
45 PF01842 ACT: ACT domain; Int 98.3 5.8E-06 1.2E-10 57.2 8.0 34 188-221 2-35 (66)
46 cd04893 ACT_GcvR_1 ACT domains 98.2 1.4E-05 3E-10 58.1 8.8 63 95-165 2-64 (77)
47 cd04870 ACT_PSP_1 CT domains f 98.2 1.3E-05 2.8E-10 57.8 8.0 54 188-245 1-54 (75)
48 cd04870 ACT_PSP_1 CT domains f 98.1 1.5E-05 3.2E-10 57.5 7.7 63 96-166 1-64 (75)
49 cd04894 ACT_ACR-like_1 ACT dom 98.1 2E-05 4.3E-10 54.5 6.8 67 95-165 1-67 (69)
50 PF13291 ACT_4: ACT domain; PD 98.0 4.9E-05 1.1E-09 55.2 8.7 66 94-164 6-71 (80)
51 cd04875 ACT_F4HF-DF N-terminal 98.0 7.3E-05 1.6E-09 53.5 9.0 34 96-129 1-34 (74)
52 COG4747 ACT domain-containing 97.9 0.0002 4.3E-09 56.0 11.2 97 95-217 4-100 (142)
53 PRK00194 hypothetical protein; 97.9 5.6E-05 1.2E-09 56.2 7.6 64 94-164 3-67 (90)
54 PF13740 ACT_6: ACT domain; PD 97.9 0.0001 2.2E-09 53.3 8.4 48 188-239 4-51 (76)
55 cd04869 ACT_GcvR_2 ACT domains 97.9 0.00012 2.6E-09 53.0 8.6 35 96-130 1-35 (81)
56 cd04887 ACT_MalLac-Enz ACT_Mal 97.9 0.0002 4.4E-09 50.8 9.5 62 97-164 2-63 (74)
57 cd04893 ACT_GcvR_1 ACT domains 97.8 7.4E-05 1.6E-09 54.2 7.0 33 188-220 3-35 (77)
58 cd04872 ACT_1ZPV ACT domain pr 97.8 8.1E-05 1.8E-09 55.3 7.2 65 95-166 2-67 (88)
59 cd04875 ACT_F4HF-DF N-terminal 97.8 0.00023 5.1E-09 50.9 8.7 33 188-220 1-33 (74)
60 PF13291 ACT_4: ACT domain; PD 97.7 0.00021 4.6E-09 51.8 7.5 37 185-221 5-41 (80)
61 PRK00194 hypothetical protein; 97.6 0.00024 5.2E-09 52.8 7.1 31 188-218 5-35 (90)
62 cd04872 ACT_1ZPV ACT domain pr 97.6 0.00023 5.1E-09 52.8 6.8 38 188-227 3-40 (88)
63 PRK00227 glnD PII uridylyl-tra 97.5 0.00045 9.8E-09 69.5 9.7 69 81-168 624-692 (693)
64 cd04869 ACT_GcvR_2 ACT domains 97.5 0.0012 2.7E-08 47.7 8.8 33 188-220 1-33 (81)
65 COG3830 ACT domain-containing 97.4 0.00018 3.8E-09 53.6 3.9 30 187-216 4-33 (90)
66 cd04886 ACT_ThrD-II-like C-ter 97.4 0.0016 3.6E-08 45.1 8.7 63 97-164 1-66 (73)
67 TIGR00655 PurU formyltetrahydr 97.4 0.007 1.5E-07 54.7 14.4 65 96-164 2-66 (280)
68 cd04931 ACT_PAH ACT domain of 97.3 0.0012 2.7E-08 49.5 7.4 66 188-258 16-83 (90)
69 PRK13562 acetolactate synthase 97.2 0.003 6.5E-08 46.7 8.3 66 96-166 4-69 (84)
70 PRK06737 acetolactate synthase 97.2 0.0039 8.3E-08 45.3 8.7 66 95-166 3-68 (76)
71 cd04905 ACT_CM-PDT C-terminal 97.2 0.0021 4.5E-08 46.7 7.4 64 188-255 3-68 (80)
72 cd04929 ACT_TPH ACT domain of 97.2 0.0014 3.1E-08 47.3 6.4 63 189-255 3-65 (74)
73 PRK08178 acetolactate synthase 97.2 0.0041 8.8E-08 47.1 9.1 67 93-166 7-73 (96)
74 PRK06027 purU formyltetrahydro 97.2 0.0034 7.4E-08 56.9 10.4 70 93-166 5-74 (286)
75 cd04889 ACT_PDH-BS-like C-term 97.2 0.0018 3.8E-08 43.5 6.5 46 97-143 1-46 (56)
76 PRK08577 hypothetical protein; 97.2 0.0097 2.1E-07 47.8 11.7 69 91-164 53-122 (136)
77 cd04887 ACT_MalLac-Enz ACT_Mal 97.1 0.0022 4.7E-08 45.4 7.0 32 189-220 2-33 (74)
78 cd04877 ACT_TyrR N-terminal AC 97.1 0.0035 7.5E-08 44.8 8.1 59 96-164 2-60 (74)
79 cd04888 ACT_PheB-BS C-terminal 97.1 0.0047 1E-07 43.8 8.6 63 96-164 2-65 (76)
80 cd04904 ACT_AAAH ACT domain of 97.1 0.0018 3.9E-08 46.5 6.4 63 189-255 3-65 (74)
81 PRK13010 purU formyltetrahydro 97.1 0.016 3.5E-07 52.6 13.9 36 93-128 8-43 (289)
82 COG3830 ACT domain-containing 97.1 0.00077 1.7E-08 50.2 4.3 66 94-166 3-69 (90)
83 TIGR00119 acolac_sm acetolacta 97.1 0.0059 1.3E-07 50.5 9.8 65 96-166 3-67 (157)
84 cd04881 ACT_HSDH-Hom ACT_HSDH_ 97.0 0.0057 1.2E-07 43.0 8.5 64 96-164 2-65 (79)
85 cd04908 ACT_Bt0572_1 N-termina 97.0 0.0057 1.2E-07 42.6 8.2 45 95-143 2-46 (66)
86 PRK11895 ilvH acetolactate syn 97.0 0.0073 1.6E-07 50.2 10.0 66 95-166 3-68 (161)
87 cd04877 ACT_TyrR N-terminal AC 97.0 0.0012 2.6E-08 47.3 4.3 33 188-220 2-34 (74)
88 CHL00100 ilvH acetohydroxyacid 97.0 0.0068 1.5E-07 51.0 9.3 66 95-166 3-68 (174)
89 PRK13011 formyltetrahydrofolat 96.9 0.054 1.2E-06 49.1 15.7 67 94-166 7-74 (286)
90 PRK13011 formyltetrahydrofolat 96.9 0.0034 7.4E-08 56.9 7.6 32 188-221 9-40 (286)
91 PRK11152 ilvM acetolactate syn 96.9 0.011 2.3E-07 43.1 8.7 65 95-166 4-68 (76)
92 PRK11899 prephenate dehydratas 96.8 0.0042 9.1E-08 56.1 7.6 55 187-245 195-249 (279)
93 PRK11589 gcvR glycine cleavage 96.8 0.0045 9.8E-08 52.8 7.2 34 95-128 96-129 (190)
94 cd04878 ACT_AHAS N-terminal AC 96.8 0.018 3.8E-07 39.6 9.1 62 96-163 2-63 (72)
95 COG0788 PurU Formyltetrahydrof 96.8 0.0074 1.6E-07 53.6 8.6 37 93-129 6-42 (287)
96 cd04909 ACT_PDH-BS C-terminal 96.8 0.021 4.6E-07 39.8 9.4 35 95-129 2-36 (69)
97 cd04905 ACT_CM-PDT C-terminal 96.8 0.019 4.2E-07 41.5 9.4 66 95-164 2-68 (80)
98 cd04889 ACT_PDH-BS-like C-term 96.8 0.006 1.3E-07 40.9 6.2 33 189-221 1-33 (56)
99 cd04879 ACT_3PGDH-like ACT_3PG 96.7 0.01 2.2E-07 40.7 7.4 33 189-221 2-34 (71)
100 cd04880 ACT_AAAH-PDT-like ACT 96.7 0.0086 1.9E-07 42.7 7.1 62 191-256 4-67 (75)
101 TIGR00655 PurU formyltetrahydr 96.7 0.0095 2.1E-07 53.8 8.6 33 188-220 2-34 (280)
102 cd04888 ACT_PheB-BS C-terminal 96.6 0.0096 2.1E-07 42.2 6.9 32 188-219 2-33 (76)
103 cd04903 ACT_LSD C-terminal ACT 96.6 0.015 3.3E-07 39.9 7.7 32 189-220 2-33 (71)
104 cd04903 ACT_LSD C-terminal ACT 96.6 0.02 4.4E-07 39.3 8.2 46 97-142 2-47 (71)
105 PRK04435 hypothetical protein; 96.6 0.027 5.8E-07 46.0 9.9 73 86-164 61-134 (147)
106 cd04883 ACT_AcuB C-terminal AC 96.6 0.027 6E-07 39.4 8.8 49 95-143 2-50 (72)
107 cd04879 ACT_3PGDH-like ACT_3PG 96.6 0.011 2.4E-07 40.5 6.5 46 97-142 2-47 (71)
108 cd04930 ACT_TH ACT domain of t 96.5 0.0076 1.7E-07 47.3 6.2 64 188-255 43-106 (115)
109 cd04886 ACT_ThrD-II-like C-ter 96.5 0.0043 9.2E-08 42.9 4.2 32 189-220 1-32 (73)
110 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.5 0.0091 2E-07 41.9 5.9 32 189-220 3-34 (79)
111 cd04876 ACT_RelA-SpoT ACT dom 96.5 0.032 7E-07 37.2 8.4 46 97-143 1-46 (71)
112 cd04901 ACT_3PGDH C-terminal A 96.4 0.0047 1E-07 42.9 4.0 45 97-143 2-46 (69)
113 PRK13010 purU formyltetrahydro 96.4 0.014 3.1E-07 52.9 8.0 31 188-218 11-41 (289)
114 cd04884 ACT_CBS C-terminal ACT 96.4 0.024 5.2E-07 40.0 7.7 32 97-128 2-33 (72)
115 PRK06027 purU formyltetrahydro 96.4 0.018 3.8E-07 52.2 8.5 33 188-220 8-40 (286)
116 cd04908 ACT_Bt0572_1 N-termina 96.4 0.0052 1.1E-07 42.8 4.0 33 188-220 3-35 (66)
117 cd04878 ACT_AHAS N-terminal AC 96.4 0.024 5.2E-07 38.9 7.4 33 188-220 2-34 (72)
118 cd04902 ACT_3PGDH-xct C-termin 96.4 0.012 2.5E-07 41.2 5.8 47 97-143 2-48 (73)
119 cd04882 ACT_Bt0572_2 C-termina 96.3 0.024 5.3E-07 38.6 7.3 32 97-128 2-33 (65)
120 COG0077 PheA Prephenate dehydr 96.1 0.019 4.2E-07 51.7 7.2 66 186-255 194-261 (279)
121 cd04874 ACT_Af1403 N-terminal 96.1 0.039 8.4E-07 38.0 7.4 33 96-128 2-34 (72)
122 PF13710 ACT_5: ACT domain; PD 96.0 0.048 1E-06 38.0 7.5 58 103-166 1-58 (63)
123 PRK10872 relA (p)ppGpp synthet 96.0 0.05 1.1E-06 55.4 10.5 77 83-164 654-731 (743)
124 cd04894 ACT_ACR-like_1 ACT dom 96.0 0.038 8.3E-07 38.4 6.6 47 188-238 2-48 (69)
125 cd02116 ACT ACT domains are co 96.0 0.075 1.6E-06 33.4 8.0 33 97-129 1-33 (60)
126 PRK10622 pheA bifunctional cho 96.0 0.025 5.4E-07 53.4 7.7 65 187-255 298-364 (386)
127 PRK07334 threonine dehydratase 95.9 0.053 1.2E-06 51.4 9.8 65 95-164 327-394 (403)
128 cd04931 ACT_PAH ACT domain of 95.9 0.12 2.6E-06 38.7 9.5 72 91-167 11-83 (90)
129 cd04898 ACT_ACR-like_4 ACT dom 95.8 0.016 3.5E-07 41.7 4.2 70 97-166 3-74 (77)
130 cd04882 ACT_Bt0572_2 C-termina 95.7 0.065 1.4E-06 36.4 7.0 32 189-220 2-33 (65)
131 cd04880 ACT_AAAH-PDT-like ACT 95.6 0.15 3.3E-06 36.1 8.9 64 97-164 2-66 (75)
132 cd04884 ACT_CBS C-terminal ACT 95.6 0.082 1.8E-06 37.2 7.3 32 189-220 2-33 (72)
133 CHL00100 ilvH acetohydroxyacid 95.5 0.015 3.2E-07 49.0 3.7 33 188-220 4-36 (174)
134 cd04874 ACT_Af1403 N-terminal 95.5 0.03 6.4E-07 38.6 4.6 33 188-220 2-34 (72)
135 PRK08577 hypothetical protein; 95.4 0.075 1.6E-06 42.6 7.4 34 187-220 57-90 (136)
136 PRK11092 bifunctional (p)ppGpp 95.4 0.12 2.6E-06 52.4 10.3 75 84-164 615-690 (702)
137 PRK06737 acetolactate synthase 95.2 0.025 5.5E-07 41.1 3.7 33 188-220 4-36 (76)
138 PRK06635 aspartate kinase; Rev 95.2 0.25 5.5E-06 46.6 11.5 104 94-216 262-373 (404)
139 cd04909 ACT_PDH-BS C-terminal 95.2 0.026 5.6E-07 39.3 3.5 33 188-220 3-35 (69)
140 PRK07334 threonine dehydratase 95.2 0.089 1.9E-06 49.8 8.2 34 187-220 327-360 (403)
141 cd04902 ACT_3PGDH-xct C-termin 95.1 0.063 1.4E-06 37.4 5.4 31 190-220 3-33 (73)
142 COG4747 ACT domain-containing 95.1 0.14 3.1E-06 40.2 7.6 47 95-142 70-116 (142)
143 TIGR00691 spoT_relA (p)ppGpp s 95.0 0.18 4E-06 51.1 10.4 76 83-164 598-674 (683)
144 TIGR00719 sda_beta L-serine de 95.0 0.11 2.3E-06 45.0 7.6 53 91-143 145-197 (208)
145 cd02116 ACT ACT domains are co 95.0 0.049 1.1E-06 34.3 4.3 32 189-220 1-32 (60)
146 cd04901 ACT_3PGDH C-terminal A 94.9 0.021 4.7E-07 39.5 2.6 32 189-220 2-33 (69)
147 cd04904 ACT_AAAH ACT domain of 94.9 0.22 4.7E-06 35.6 7.9 49 96-146 2-51 (74)
148 COG0788 PurU Formyltetrahydrof 94.8 0.08 1.7E-06 47.2 6.4 62 188-255 9-73 (287)
149 TIGR00119 acolac_sm acetolacta 94.8 0.042 9E-07 45.5 4.2 33 188-220 3-35 (157)
150 TIGR00656 asp_kin_monofn aspar 94.8 0.84 1.8E-05 43.0 13.7 103 93-216 259-370 (401)
151 PRK13562 acetolactate synthase 94.8 0.1 2.2E-06 38.6 5.8 33 188-220 4-36 (84)
152 PRK11152 ilvM acetolactate syn 94.7 0.17 3.6E-06 36.7 6.8 33 188-220 5-37 (76)
153 PRK11895 ilvH acetolactate syn 94.5 0.052 1.1E-06 45.1 4.1 33 188-220 4-36 (161)
154 cd04876 ACT_RelA-SpoT ACT dom 94.4 0.066 1.4E-06 35.6 4.0 32 189-220 1-32 (71)
155 PRK04435 hypothetical protein; 94.4 0.19 4.2E-06 41.0 7.3 32 188-219 71-102 (147)
156 PRK08178 acetolactate synthase 94.3 0.052 1.1E-06 41.2 3.4 33 188-220 10-42 (96)
157 cd04929 ACT_TPH ACT domain of 94.3 0.39 8.4E-06 34.5 7.8 50 96-147 2-52 (74)
158 cd04883 ACT_AcuB C-terminal AC 93.9 0.37 8E-06 33.5 7.1 32 188-219 3-34 (72)
159 COG0317 SpoT Guanosine polypho 93.9 0.41 8.8E-06 48.4 9.8 74 83-163 615-690 (701)
160 PLN02317 arogenate dehydratase 93.7 0.25 5.4E-06 46.5 7.4 65 187-255 284-364 (382)
161 PRK11899 prephenate dehydratas 93.6 0.37 8.1E-06 43.5 8.3 52 94-147 194-246 (279)
162 PF13840 ACT_7: ACT domain ; P 93.5 0.43 9.3E-06 33.2 6.7 45 92-143 4-52 (65)
163 PRK10872 relA (p)ppGpp synthet 93.5 0.27 5.8E-06 50.2 7.8 37 184-220 664-700 (743)
164 PRK08210 aspartate kinase I; R 93.3 1.6 3.4E-05 41.3 12.2 99 93-216 270-372 (403)
165 cd04871 ACT_PSP_2 ACT domains 93.1 0.068 1.5E-06 39.4 2.2 31 188-220 1-32 (84)
166 COG2716 GcvR Glycine cleavage 93.1 0.41 8.9E-06 40.0 7.0 70 93-164 91-161 (176)
167 cd04930 ACT_TH ACT domain of t 93.0 0.66 1.4E-05 36.3 7.8 51 94-146 41-92 (115)
168 PRK11092 bifunctional (p)ppGpp 92.9 0.36 7.9E-06 49.1 7.7 37 184-220 624-660 (702)
169 PRK11898 prephenate dehydratas 92.7 0.38 8.3E-06 43.5 7.0 64 188-255 198-264 (283)
170 PLN02551 aspartokinase 92.7 1.7 3.7E-05 42.8 11.9 109 93-220 365-481 (521)
171 PRK06291 aspartate kinase; Pro 92.7 2.7 5.9E-05 40.6 13.2 105 93-218 320-433 (465)
172 COG1707 ACT domain-containing 92.5 0.55 1.2E-05 39.2 7.0 47 96-142 4-50 (218)
173 TIGR00691 spoT_relA (p)ppGpp s 92.5 0.39 8.4E-06 48.8 7.4 38 184-221 608-645 (683)
174 cd04885 ACT_ThrD-I Tandem C-te 92.5 0.92 2E-05 31.6 7.3 60 97-164 1-61 (68)
175 COG0077 PheA Prephenate dehydr 92.2 0.8 1.7E-05 41.4 8.2 54 93-148 193-247 (279)
176 TIGR00719 sda_beta L-serine de 91.8 0.37 7.9E-06 41.6 5.4 41 188-228 150-190 (208)
177 TIGR01268 Phe4hydrox_tetr phen 91.7 0.52 1.1E-05 45.1 6.7 65 188-256 18-83 (436)
178 PF13710 ACT_5: ACT domain; PD 91.5 0.56 1.2E-05 32.5 5.2 27 195-221 1-27 (63)
179 COG0317 SpoT Guanosine polypho 91.5 0.53 1.2E-05 47.6 6.8 37 184-220 625-661 (701)
180 PF13840 ACT_7: ACT domain ; P 91.4 0.44 9.6E-06 33.1 4.5 31 188-218 8-42 (65)
181 cd04871 ACT_PSP_2 ACT domains 91.1 0.15 3.2E-06 37.5 2.0 29 96-124 1-30 (84)
182 PRK06382 threonine dehydratase 90.9 1.7 3.6E-05 41.3 9.4 68 92-164 328-398 (406)
183 PRK13581 D-3-phosphoglycerate 90.4 0.71 1.5E-05 45.4 6.6 52 92-143 450-501 (526)
184 TIGR01327 PGDH D-3-phosphoglyc 89.9 0.52 1.1E-05 46.3 5.2 52 92-143 449-500 (525)
185 PRK11790 D-3-phosphoglycerate 89.7 0.53 1.1E-05 44.8 4.9 49 93-143 337-385 (409)
186 TIGR01270 Trp_5_monoox tryptop 89.5 0.83 1.8E-05 44.0 6.0 65 188-255 33-97 (464)
187 PRK07431 aspartate kinase; Pro 89.3 5.5 0.00012 39.6 11.9 110 93-218 438-554 (587)
188 PRK09034 aspartate kinase; Rev 89.2 7.8 0.00017 37.4 12.6 109 93-219 307-421 (454)
189 PRK09181 aspartate kinase; Val 88.9 7.2 0.00016 38.0 12.2 104 93-218 328-436 (475)
190 PRK06545 prephenate dehydrogen 88.8 1.7 3.6E-05 40.5 7.5 38 92-129 288-325 (359)
191 PRK09436 thrA bifunctional asp 88.7 8.8 0.00019 39.9 13.3 110 92-218 313-431 (819)
192 cd04906 ACT_ThrD-I_1 First of 88.4 4.8 0.0001 29.3 8.3 61 96-164 3-64 (85)
193 PRK09084 aspartate kinase III; 87.9 12 0.00026 36.0 12.9 106 92-214 304-415 (448)
194 PRK08818 prephenate dehydrogen 87.9 1.4 3.1E-05 41.4 6.4 48 93-143 294-342 (370)
195 cd04932 ACT_AKiii-LysC-EC_1 AC 87.8 5.5 0.00012 28.4 8.1 23 101-123 11-33 (75)
196 COG0440 IlvH Acetolactate synt 87.7 2.5 5.5E-05 35.1 7.0 67 95-167 5-71 (163)
197 TIGR01127 ilvA_1Cterm threonin 87.1 5.5 0.00012 37.2 9.9 65 95-164 306-373 (380)
198 TIGR00657 asp_kinases aspartat 86.9 21 0.00045 34.2 13.9 104 93-217 301-412 (441)
199 PRK08198 threonine dehydratase 86.8 6.9 0.00015 36.9 10.5 37 92-128 325-361 (404)
200 PRK10622 pheA bifunctional cho 86.4 4.2 9.1E-05 38.5 8.7 53 93-147 296-349 (386)
201 PRK07431 aspartate kinase; Pro 86.1 8.4 0.00018 38.3 11.1 98 101-217 278-382 (587)
202 PRK08818 prephenate dehydrogen 85.4 1.9 4.2E-05 40.5 5.9 45 188-237 297-342 (370)
203 cd04912 ACT_AKiii-LysC-EC-like 84.7 7.6 0.00016 27.4 7.5 56 102-164 12-67 (75)
204 TIGR01270 Trp_5_monoox tryptop 84.1 4.7 0.0001 39.0 7.8 55 91-147 28-84 (464)
205 COG0527 LysC Aspartokinases [A 84.0 28 0.00061 33.6 13.2 107 92-218 305-418 (447)
206 cd04935 ACT_AKiii-DAPDC_1 ACT 83.6 8 0.00017 27.6 7.2 55 102-164 12-67 (75)
207 COG1707 ACT domain-containing 83.5 3.4 7.5E-05 34.6 5.8 40 189-228 5-44 (218)
208 PRK08198 threonine dehydratase 82.9 5.2 0.00011 37.8 7.7 33 188-220 329-361 (404)
209 COG2150 Predicted regulator of 82.5 2.9 6.2E-05 34.7 4.9 45 93-140 92-138 (167)
210 COG2150 Predicted regulator of 82.4 2.3 5.1E-05 35.2 4.4 32 188-219 95-128 (167)
211 PRK08961 bifunctional aspartat 81.9 17 0.00037 38.0 11.6 103 93-214 321-429 (861)
212 PRK06349 homoserine dehydrogen 81.5 8.1 0.00018 36.9 8.5 49 93-143 347-395 (426)
213 PRK11790 D-3-phosphoglycerate 80.7 3 6.5E-05 39.7 5.2 58 188-254 340-397 (409)
214 PLN02317 arogenate dehydratase 79.8 12 0.00026 35.4 8.8 38 94-133 283-320 (382)
215 PRK11898 prephenate dehydratas 79.7 15 0.00033 33.2 9.2 53 93-147 195-249 (283)
216 PF05088 Bac_GDH: Bacterial NA 79.3 21 0.00045 39.8 11.4 89 81-169 474-568 (1528)
217 TIGR01268 Phe4hydrox_tetr phen 77.2 16 0.00035 35.1 8.9 66 94-164 16-82 (436)
218 cd04868 ACT_AK-like ACT domain 76.3 5.3 0.00012 25.5 4.0 29 189-217 3-34 (60)
219 cd04922 ACT_AKi-HSDH-ThrA_2 AC 75.8 5.5 0.00012 26.7 4.1 31 188-218 3-36 (66)
220 PRK09466 metL bifunctional asp 75.3 67 0.0015 33.5 13.4 102 93-215 316-423 (810)
221 PRK06545 prephenate dehydrogen 75.0 5.2 0.00011 37.2 5.0 33 188-220 292-324 (359)
222 PRK06382 threonine dehydratase 74.7 3.6 7.8E-05 39.0 3.9 32 187-218 331-362 (406)
223 cd04891 ACT_AK-LysC-DapG-like_ 74.1 20 0.00044 22.9 6.7 26 101-126 8-33 (61)
224 KOG2663 Acetolactate synthase, 73.8 3.6 7.7E-05 36.7 3.3 35 93-127 76-110 (309)
225 PRK08526 threonine dehydratase 73.6 28 0.00062 33.0 9.6 69 91-164 323-394 (403)
226 cd04913 ACT_AKii-LysC-BS-like_ 73.2 3.8 8.1E-05 27.9 2.8 24 194-217 10-33 (75)
227 cd04891 ACT_AK-LysC-DapG-like_ 72.5 4.8 0.0001 26.1 3.1 27 193-219 8-34 (61)
228 TIGR01327 PGDH D-3-phosphoglyc 72.4 7.2 0.00016 38.4 5.4 40 189-228 454-493 (525)
229 cd04937 ACT_AKi-DapG-BS_2 ACT 72.2 27 0.00059 23.6 8.1 31 96-128 3-36 (64)
230 PRK06349 homoserine dehydrogen 71.2 8.9 0.00019 36.7 5.7 33 186-218 348-380 (426)
231 PRK13581 D-3-phosphoglycerate 70.9 4.3 9.4E-05 39.9 3.5 39 189-227 455-493 (526)
232 cd04937 ACT_AKi-DapG-BS_2 ACT 70.9 8 0.00017 26.3 4.0 28 188-215 3-33 (64)
233 cd04919 ACT_AK-Hom3_2 ACT doma 70.0 8.6 0.00019 25.9 4.0 33 188-220 3-38 (66)
234 TIGR01127 ilvA_1Cterm threonin 69.5 5.9 0.00013 37.0 4.0 30 188-217 307-336 (380)
235 cd04892 ACT_AK-like_2 ACT doma 69.2 9.7 0.00021 24.8 4.1 30 188-217 2-34 (65)
236 cd04890 ACT_AK-like_1 ACT doma 68.9 31 0.00067 22.9 6.7 23 102-124 11-33 (62)
237 cd04868 ACT_AK-like ACT domain 68.7 10 0.00022 24.1 4.0 22 103-124 12-33 (60)
238 cd04932 ACT_AKiii-LysC-EC_1 AC 68.5 4.9 0.00011 28.7 2.5 56 193-258 11-66 (75)
239 cd04913 ACT_AKii-LysC-BS-like_ 68.1 5.8 0.00013 27.0 2.8 24 101-124 9-32 (75)
240 PRK08841 aspartate kinase; Val 67.6 65 0.0014 30.5 10.6 91 93-215 257-347 (392)
241 COG4492 PheB ACT domain-contai 67.1 41 0.00088 27.2 7.6 69 91-164 69-137 (150)
242 PRK10820 DNA-binding transcrip 66.7 6.9 0.00015 38.4 3.9 33 188-220 2-34 (520)
243 PRK14634 hypothetical protein; 66.1 73 0.0016 26.1 9.5 62 105-168 7-68 (155)
244 cd04885 ACT_ThrD-I Tandem C-te 65.0 6.4 0.00014 27.2 2.5 29 190-219 2-30 (68)
245 cd04924 ACT_AK-Arch_2 ACT doma 63.8 12 0.00026 24.9 3.7 32 188-219 3-37 (66)
246 COG3603 Uncharacterized conser 62.1 16 0.00034 28.9 4.4 26 191-216 71-96 (128)
247 cd04934 ACT_AK-Hom3_1 CT domai 61.7 44 0.00095 23.6 6.4 53 102-164 12-65 (73)
248 cd04890 ACT_AK-like_1 ACT doma 61.2 17 0.00036 24.2 4.0 38 194-239 11-48 (62)
249 cd04935 ACT_AKiii-DAPDC_1 ACT 61.1 8.3 0.00018 27.5 2.5 39 194-240 12-50 (75)
250 cd04916 ACT_AKiii-YclM-BS_2 AC 60.5 18 0.00038 24.1 4.1 33 188-220 3-38 (66)
251 cd04919 ACT_AK-Hom3_2 ACT doma 60.0 19 0.00041 24.1 4.2 29 96-124 3-34 (66)
252 cd04922 ACT_AKi-HSDH-ThrA_2 AC 59.4 49 0.0011 21.8 8.7 29 96-124 3-34 (66)
253 PRK14646 hypothetical protein; 59.3 98 0.0021 25.4 9.6 60 106-168 8-68 (155)
254 PTZ00324 glutamate dehydrogena 57.2 85 0.0018 33.5 9.9 42 101-143 240-281 (1002)
255 PRK14636 hypothetical protein; 56.6 1.2E+02 0.0025 25.5 9.1 62 104-168 4-66 (176)
256 cd04933 ACT_AK1-AT_1 ACT domai 56.5 11 0.00024 27.3 2.5 40 194-241 12-51 (78)
257 COG3978 Acetolactate synthase 56.1 79 0.0017 23.2 7.8 67 94-167 3-69 (86)
258 cd04918 ACT_AK1-AT_2 ACT domai 54.4 40 0.00086 22.9 5.0 32 189-220 4-37 (65)
259 cd04921 ACT_AKi-HSDH-ThrA-like 54.3 20 0.00044 25.0 3.7 31 188-218 3-36 (80)
260 cd04923 ACT_AK-LysC-DapG-like_ 53.7 26 0.00057 22.8 4.0 29 189-217 3-34 (63)
261 cd04936 ACT_AKii-LysC-BS-like_ 53.6 27 0.00058 22.8 4.0 29 189-217 3-34 (63)
262 cd04924 ACT_AK-Arch_2 ACT doma 52.8 27 0.00058 23.1 4.0 29 96-124 3-34 (66)
263 cd04906 ACT_ThrD-I_1 First of 52.8 16 0.00034 26.5 2.9 26 188-213 3-28 (85)
264 cd04892 ACT_AK-like_2 ACT doma 52.6 28 0.0006 22.4 4.0 28 97-124 3-33 (65)
265 TIGR02079 THD1 threonine dehyd 51.9 1.4E+02 0.0031 28.2 10.0 35 92-126 323-357 (409)
266 cd04916 ACT_AKiii-YclM-BS_2 AC 51.9 31 0.00068 22.8 4.2 30 96-125 3-35 (66)
267 PRK12483 threonine dehydratase 50.6 2.6E+02 0.0057 27.6 13.2 120 92-220 343-475 (521)
268 cd04920 ACT_AKiii-DAPDC_2 ACT 50.3 77 0.0017 21.4 6.4 27 97-123 3-32 (63)
269 cd04933 ACT_AK1-AT_1 ACT domai 49.9 17 0.00037 26.3 2.6 22 102-123 12-33 (78)
270 cd04912 ACT_AKiii-LysC-EC-like 49.4 22 0.00048 25.0 3.2 29 188-216 3-34 (75)
271 cd04914 ACT_AKi-DapG-BS_1 ACT 49.3 32 0.00069 23.7 3.9 30 96-125 3-33 (67)
272 PRK14645 hypothetical protein; 48.6 1.5E+02 0.0033 24.3 9.9 62 105-168 9-70 (154)
273 PF05088 Bac_GDH: Bacterial NA 48.3 1.2E+02 0.0025 34.1 9.7 175 81-260 328-568 (1528)
274 COG4492 PheB ACT domain-contai 48.0 20 0.00043 28.9 2.9 29 188-216 74-102 (150)
275 cd04934 ACT_AK-Hom3_1 CT domai 46.3 18 0.00039 25.6 2.3 37 194-238 12-48 (73)
276 PRK00907 hypothetical protein; 45.6 1E+02 0.0023 23.0 6.4 65 94-163 17-83 (92)
277 KOG2663 Acetolactate synthase, 43.7 21 0.00045 31.9 2.7 34 187-220 78-111 (309)
278 PRK08639 threonine dehydratase 43.6 2.3E+02 0.0049 27.0 10.0 34 92-125 334-367 (420)
279 COG0440 IlvH Acetolactate synt 43.5 15 0.00032 30.6 1.7 33 188-220 6-38 (163)
280 cd04918 ACT_AK1-AT_2 ACT domai 43.0 1E+02 0.0022 20.8 7.6 29 96-124 3-33 (65)
281 cd04920 ACT_AKiii-DAPDC_2 ACT 42.8 48 0.001 22.4 4.0 27 188-214 2-31 (63)
282 cd04914 ACT_AKi-DapG-BS_1 ACT 41.9 26 0.00056 24.2 2.5 23 195-217 11-33 (67)
283 PRK10820 DNA-binding transcrip 41.7 45 0.00098 32.7 5.0 36 96-133 2-37 (520)
284 PRK14633 hypothetical protein; 41.6 1.9E+02 0.0042 23.5 10.0 56 107-168 6-62 (150)
285 KOG2797 Prephenate dehydratase 41.4 1E+02 0.0022 28.5 6.7 132 99-236 187-337 (377)
286 PRK00092 ribosome maturation p 40.0 2E+02 0.0044 23.3 9.5 57 107-168 9-66 (154)
287 cd04911 ACT_AKiii-YclM-BS_1 AC 39.2 1.1E+02 0.0023 22.1 5.4 56 103-167 13-68 (76)
288 cd04921 ACT_AKi-HSDH-ThrA-like 39.0 45 0.00098 23.2 3.5 29 96-124 3-34 (80)
289 PRK14632 hypothetical protein; 38.4 2.3E+02 0.0051 23.6 9.4 56 107-168 10-66 (172)
290 PRK14640 hypothetical protein; 38.0 2.2E+02 0.0048 23.2 9.8 58 106-168 7-65 (152)
291 COG3283 TyrR Transcriptional r 38.0 69 0.0015 30.6 5.2 33 188-220 2-34 (511)
292 cd04915 ACT_AK-Ectoine_2 ACT d 37.8 35 0.00077 23.4 2.7 32 189-220 5-38 (66)
293 PRK06635 aspartate kinase; Rev 37.7 49 0.0011 31.1 4.5 32 93-124 339-373 (404)
294 PF09383 NIL: NIL domain; Int 37.0 1.4E+02 0.0031 20.7 6.7 52 105-163 16-67 (76)
295 cd04915 ACT_AK-Ectoine_2 ACT d 34.8 1.5E+02 0.0032 20.2 7.5 29 95-123 3-33 (66)
296 PRK14630 hypothetical protein; 34.8 2.4E+02 0.0053 22.7 9.8 63 102-168 5-67 (143)
297 PRK05925 aspartate kinase; Pro 34.4 4.3E+02 0.0093 25.4 11.6 118 93-239 299-419 (440)
298 TIGR00656 asp_kin_monofn aspar 34.4 66 0.0014 30.2 4.7 33 92-124 335-370 (401)
299 PF11373 DUF3175: Protein of u 34.4 15 0.00032 27.1 0.2 25 233-258 55-81 (86)
300 COG3978 Acetolactate synthase 33.5 1.9E+02 0.0042 21.2 6.7 55 187-245 4-58 (86)
301 COG0779 Uncharacterized protei 33.3 2.7E+02 0.0059 22.8 9.1 80 105-200 8-90 (153)
302 PRK14647 hypothetical protein; 32.6 2.8E+02 0.006 22.7 9.5 56 107-168 10-67 (159)
303 cd04917 ACT_AKiii-LysC-EC_2 AC 32.2 96 0.0021 20.6 4.1 27 188-214 3-32 (64)
304 TIGR01124 ilvA_2Cterm threonin 32.2 3.6E+02 0.0078 26.4 9.5 115 92-215 323-449 (499)
305 PRK14639 hypothetical protein; 31.3 2.8E+02 0.006 22.3 9.2 53 111-168 3-56 (140)
306 PF05117 DUF695: Family of unk 30.3 2E+02 0.0044 22.4 6.3 33 202-239 67-99 (136)
307 PRK08526 threonine dehydratase 28.9 1.9E+02 0.004 27.5 6.8 32 188-219 328-359 (403)
308 PRK14631 hypothetical protein; 27.7 3.6E+02 0.0079 22.5 9.7 93 106-214 9-120 (174)
309 PRK14638 hypothetical protein; 26.8 3.5E+02 0.0075 22.0 9.6 58 107-168 10-68 (150)
310 PF02319 E2F_TDP: E2F/DP famil 26.8 51 0.0011 23.2 2.0 19 196-214 42-60 (71)
311 PLN02550 threonine dehydratase 26.4 6.8E+02 0.015 25.2 12.2 120 93-220 416-545 (591)
312 cd07253 Glo_EDI_BRP_like_2 Thi 24.6 1.7E+02 0.0036 21.2 4.7 51 189-245 71-121 (125)
313 PRK09084 aspartate kinase III; 24.0 3.3E+02 0.0071 26.2 7.6 44 188-239 308-354 (448)
314 COG2061 ACT-domain-containing 23.9 88 0.0019 25.9 3.0 30 95-124 6-35 (170)
315 PF12681 Glyoxalase_2: Glyoxal 23.4 2.4E+02 0.0052 20.0 5.3 39 200-244 67-105 (108)
316 PF04083 Abhydro_lipase: Parti 23.3 2.6E+02 0.0055 19.2 5.1 30 112-143 2-31 (63)
317 PRK08841 aspartate kinase; Val 23.2 1.3E+02 0.0028 28.5 4.5 32 92-123 316-347 (392)
318 PF13037 DUF3898: Domain of un 23.1 1.5E+02 0.0032 22.1 3.8 14 207-220 40-53 (91)
319 PRK08210 aspartate kinase I; R 22.6 1.2E+02 0.0025 28.6 4.1 30 188-217 273-303 (403)
320 KOG0456 Aspartate kinase [Amin 22.6 1.9E+02 0.004 27.9 5.3 104 94-216 393-504 (559)
321 PRK09224 threonine dehydratase 22.6 6.7E+02 0.014 24.5 9.5 113 93-214 327-450 (504)
322 PLN02551 aspartokinase 20.9 6.7E+02 0.015 24.8 9.1 32 92-123 443-476 (521)
323 PF00903 Glyoxalase: Glyoxalas 20.8 1.9E+02 0.0042 20.9 4.4 49 190-244 78-126 (128)
324 COG1828 PurS Phosphoribosylfor 20.7 2.2E+02 0.0048 20.9 4.4 51 195-254 10-67 (83)
325 COG3603 Uncharacterized conser 20.1 1.6E+02 0.0035 23.3 3.7 34 91-124 60-96 (128)
326 TIGR00657 asp_kinases aspartat 20.0 1.8E+02 0.0039 27.8 4.9 33 92-124 376-411 (441)
No 1
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=100.00 E-value=1.7e-33 Score=285.59 Aligned_cols=171 Identities=19% Similarity=0.307 Sum_probs=146.9
Q ss_pred CCceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHH
Q 024865 79 CSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNG 157 (261)
Q Consensus 79 ~~~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~ 157 (261)
..+|.|.++++++.++|+|+|+++||||||++|+++|+.+|+||++|+|+|+ .+++++|+|+|. .+|.++. +++++.
T Consensus 662 ~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~-~~g~alD~F~V~d~~g~~~~-~~~~~~ 739 (854)
T PRK01759 662 RGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITS-QDGYVLDSFIVTELNGKLLE-FDRRRQ 739 (854)
T ss_pred CCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEc-cCCEEEEEEEEeCCCCCCCC-HHHHHH
Confidence 4578888999999999999999999999999999999999999999999974 566999999998 8888885 678999
Q ss_pred HHHHHHHhhcCCceeee---ec-C----CCCcceeee-------eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeee
Q 024865 158 LSSRLWMELLQPLRVTV---VS-R----GPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRH 222 (261)
Q Consensus 158 l~~~L~~~L~~~~~~~~---~~-~----~~~~~v~~~-------t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~ 222 (261)
|+++|.++|.++..... .+ + ..+|+|.|+ |+|||.|.|||||||+|+++|.++|++|++|||+
T Consensus 740 l~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~-- 817 (854)
T PRK01759 740 LEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKIT-- 817 (854)
T ss_pred HHHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEc--
Confidence 99999999987643211 11 1 227888884 6999999999999999999999999999999999
Q ss_pred eccceeEEEEEEEEeCCCCCccch---HHHHHHHHH
Q 024865 223 MIGDREWEVYRVLLDEGDGLSVPR---NKIEEGVWK 255 (261)
Q Consensus 223 t~ger~~dv~~F~i~~~~g~~l~~---~~~~~~l~~ 255 (261)
|.||||+|+ |||+|.+|+|++. +++.++|.+
T Consensus 818 T~gerv~D~--Fyv~~~~g~~l~~~~~~~l~~~L~~ 851 (854)
T PRK01759 818 TIGEKAEDF--FILTNQQGQALDEEERKALKSRLLS 851 (854)
T ss_pred ccCceEEEE--EEEECCCCCcCChHHHHHHHHHHHH
Confidence 799999998 9999999999983 444444444
No 2
>PRK05007 PII uridylyl-transferase; Provisional
Probab=100.00 E-value=7.6e-33 Score=281.67 Aligned_cols=172 Identities=19% Similarity=0.246 Sum_probs=146.3
Q ss_pred CceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHH
Q 024865 80 SNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGL 158 (261)
Q Consensus 80 ~~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l 158 (261)
.+|.|.++++++.++|+|+|+++||||||++|+++|+.+|+||++|+|+|+.+| +++|+|+|. .+|.++. ++++++|
T Consensus 687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg-~alD~F~V~d~~g~~~~-~~~~~~I 764 (884)
T PRK05007 687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDG-MAMDTFIVLEPDGSPLS-QDRHQVI 764 (884)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCC-eEEEEEEEECCCCCCCC-HHHHHHH
Confidence 568888999999999999999999999999999999999999999999986455 999999998 8888874 5789999
Q ss_pred HHHHHHhhcCCceee-ee---cC-----CCCcceeee-------eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeee
Q 024865 159 SSRLWMELLQPLRVT-VV---SR-----GPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRH 222 (261)
Q Consensus 159 ~~~L~~~L~~~~~~~-~~---~~-----~~~~~v~~~-------t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~ 222 (261)
++.|.++|.++.... .. ++ ..+|+|.|+ |+|||.|.|||||||+|+++|.++|++|++|||+
T Consensus 765 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~-- 842 (884)
T PRK05007 765 RKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARIT-- 842 (884)
T ss_pred HHHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEe--
Confidence 999999997663211 11 11 127888885 6999999999999999999999999999999999
Q ss_pred eccceeEEEEEEEEeCCCCCccc---hHHHHHHHHHHH
Q 024865 223 MIGDREWEVYRVLLDEGDGLSVP---RNKIEEGVWKLL 257 (261)
Q Consensus 223 t~ger~~dv~~F~i~~~~g~~l~---~~~~~~~l~~~l 257 (261)
|.||||+|+ |||++.+|.|++ ++.+.++|.+.|
T Consensus 843 T~gera~Dv--FyV~~~~g~~l~~~~~~~l~~~L~~~l 878 (884)
T PRK05007 843 TIGERVEDL--FILATADRRALNEELQQELRQRLTEAL 878 (884)
T ss_pred ccCceEEEE--EEEEcCCCCcCCHHHHHHHHHHHHHHH
Confidence 799999998 999999999998 244555554443
No 3
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7e-30 Score=249.48 Aligned_cols=173 Identities=19% Similarity=0.276 Sum_probs=144.6
Q ss_pred CCceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHH
Q 024865 79 CSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNG 157 (261)
Q Consensus 79 ~~~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~ 157 (261)
...|.|.+...+..+.|+|+||++|+|.||+.+++.+...|+||++|+|+|+.+| +++|+|+|. ++|.++. +.+...
T Consensus 669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG-~alDtfiv~~~~g~~~~-~dr~~~ 746 (867)
T COG2844 669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDG-YALDTFIVLEPDGFPVE-EDRRAA 746 (867)
T ss_pred ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCC-ceeeeEEEecCCCCccc-hhHHHH
Confidence 3457788887777899999999999999999999999999999999999998777 999999998 8888877 678888
Q ss_pred HHHHHHHhhcCCcee-ee---ecC-----CCCcceeee-------eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEee
Q 024865 158 LSSRLWMELLQPLRV-TV---VSR-----GPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGR 221 (261)
Q Consensus 158 l~~~L~~~L~~~~~~-~~---~~~-----~~~~~v~~~-------t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t 221 (261)
++..|.+++..+... .. .++ ..+|+|.|. |+|||.|.||||||++|+.+|.+++++|++|||+
T Consensus 747 ~~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkIt- 825 (867)
T COG2844 747 LRGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKIT- 825 (867)
T ss_pred HHHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeec-
Confidence 888888888644322 11 111 126888884 6999999999999999999999999999999999
Q ss_pred eeccceeEEEEEEEEeCCCCCccc---hHHHHHHHHHHH
Q 024865 222 HMIGDREWEVYRVLLDEGDGLSVP---RNKIEEGVWKLL 257 (261)
Q Consensus 222 ~t~ger~~dv~~F~i~~~~g~~l~---~~~~~~~l~~~l 257 (261)
|.||||||+ |||++.+|++++ ++.+.+++..-+
T Consensus 826 -T~GErveD~--F~vt~~~~~~l~~~~~q~l~~~ll~al 861 (867)
T COG2844 826 -TFGERVEDV--FIVTDADGQALNAELRQSLLQRLLEAL 861 (867)
T ss_pred -cccccceeE--EEEeccccccCCHHHHHHHHHHHHHHh
Confidence 899999998 999999999998 334444444443
No 4
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.97 E-value=2.7e-29 Score=255.62 Aligned_cols=172 Identities=19% Similarity=0.207 Sum_probs=146.3
Q ss_pred ceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHH
Q 024865 81 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLS 159 (261)
Q Consensus 81 ~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~ 159 (261)
.|.|.+.+..+.++|+|+|+++||||||++|+++|+.+|+||++|+|+|+ .|++++|+|+|+ .+|.++.+++++++|+
T Consensus 655 ~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt-~~g~~lD~F~V~~~~g~~~~~~~~~~~i~ 733 (850)
T TIGR01693 655 GPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTT-KDGVALDTFVVQDLFGSPPAAERVFQELL 733 (850)
T ss_pred CCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEe-cCCEEEEEEEEECCCCCCCCcHHHHHHHH
Confidence 56788888777899999999999999999999999999999999999985 566999999998 8888888878899999
Q ss_pred HHHHHhhcCCcee----ee---ec-----CCCCcceeee-------eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 160 SRLWMELLQPLRV----TV---VS-----RGPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 160 ~~L~~~L~~~~~~----~~---~~-----~~~~~~v~~~-------t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
+.|.++|.+.... .. .+ ...+|+|.|+ |+++|.|.|||||||+|+++|.++|++|++|||.
T Consensus 734 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~ 813 (850)
T TIGR01693 734 QGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT 813 (850)
T ss_pred HHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEE
Confidence 9999999874321 11 01 1126888884 6999999999999999999999999999999999
Q ss_pred eeeccceeEEEEEEEEeCCCCCccch---HHHHHHHHHHH
Q 024865 221 RHMIGDREWEVYRVLLDEGDGLSVPR---NKIEEGVWKLL 257 (261)
Q Consensus 221 t~t~ger~~dv~~F~i~~~~g~~l~~---~~~~~~l~~~l 257 (261)
|.|++++|+ |||++..|.|++. +.+.++|.+.|
T Consensus 814 --t~~~~~~d~--F~v~~~~g~~~~~~~~~~l~~~L~~~l 849 (850)
T TIGR01693 814 --TFGEKAEDV--FYVTDLFGLKLTDEEEQRLLEVLAASV 849 (850)
T ss_pred --ecCccceeE--EEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 688999997 9999999999983 44555555443
No 5
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.97 E-value=5.7e-29 Score=253.49 Aligned_cols=174 Identities=18% Similarity=0.316 Sum_probs=144.1
Q ss_pred ceEEEEEcCCC---CCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCC-ChhhH
Q 024865 81 NVSVTIDNSLS---PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIV-DPSKQ 155 (261)
Q Consensus 81 ~~~V~i~~~~~---~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~-~~~~~ 155 (261)
.|.|.+.+.+. .++|+|+|+|+||||||++|+++|+.+|+||++|+|+|+.+| +++|+|+|. .+|.++. +++++
T Consensus 688 ~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg-~alD~F~V~d~~g~~~~~~~~r~ 766 (895)
T PRK00275 688 GPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQ-FTLDTYIVLDDDGEPIGDNPARI 766 (895)
T ss_pred CCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCC-eEEEEEEEeCCCCCCccchHHHH
Confidence 45566776665 589999999999999999999999999999999999986555 999999998 7888754 45799
Q ss_pred HHHHHHHHHhhcCCceee--e---ec-----CCCCcceeee-------eeeEEEeCCcccHHHHHHHHHHhCCceEEEEE
Q 024865 156 NGLSSRLWMELLQPLRVT--V---VS-----RGPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAE 218 (261)
Q Consensus 156 ~~l~~~L~~~L~~~~~~~--~---~~-----~~~~~~v~~~-------t~iev~~~DRpGLL~dI~~~l~~~~l~I~~Ak 218 (261)
++|++.|.++|.++.... . .+ ...+|.|.|+ |.|+|+|.|||||||+|+.+|.++|+||++||
T Consensus 767 ~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~Ak 846 (895)
T PRK00275 767 EQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAK 846 (895)
T ss_pred HHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeE
Confidence 999999999998765211 1 01 1125677664 68999999999999999999999999999999
Q ss_pred EeeeeccceeEEEEEEEEeCCCCCccc----hHHHHHHHHHHHcc
Q 024865 219 IGRHMIGDREWEVYRVLLDEGDGLSVP----RNKIEEGVWKLLMG 259 (261)
Q Consensus 219 I~t~t~ger~~dv~~F~i~~~~g~~l~----~~~~~~~l~~~l~~ 259 (261)
|. |.|++|+|+ |||++.+|.+++ .+.++++|.+.|.+
T Consensus 847 I~--T~g~~v~D~--F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~ 887 (895)
T PRK00275 847 IA--TLGERVEDV--FFITDADNQPLSDPQLCSRLQDAICEQLDA 887 (895)
T ss_pred EE--ecCCEEEEE--EEEECCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 99 459999997 999999999997 25577777776643
No 6
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.97 E-value=1.2e-28 Score=250.05 Aligned_cols=169 Identities=17% Similarity=0.227 Sum_probs=138.0
Q ss_pred ceEEEE-EcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHH
Q 024865 81 NVSVTI-DNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGL 158 (261)
Q Consensus 81 ~~~V~i-~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l 158 (261)
.+.|.+ ...+..+.|+|+|+|+||||||++||++|+.+|+||++|+|+|+.+| +++|+|+|. ++|.+ +++++++
T Consensus 676 ~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g-~~ld~f~V~~~~~~~---~~~~~~i 751 (869)
T PRK04374 676 QTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHD-AIFDVFEVLPQDTYA---DGDPQRL 751 (869)
T ss_pred CCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCC-EEEEEEEEeCCCCCC---hHHHHHH
Confidence 344544 44677799999999999999999999999999999999999986556 999999998 66654 3578889
Q ss_pred HHHHHHhhcCCceee---ee--cC-----CCCcceeee-------eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEee
Q 024865 159 SSRLWMELLQPLRVT---VV--SR-----GPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGR 221 (261)
Q Consensus 159 ~~~L~~~L~~~~~~~---~~--~~-----~~~~~v~~~-------t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t 221 (261)
++.|.++|.++.... .. ++ ..+|+|.|+ |+|+|+|.|||||||+|+.+|+++|++|++|||+
T Consensus 752 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~- 830 (869)
T PRK04374 752 AAALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIA- 830 (869)
T ss_pred HHHHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEE-
Confidence 999999998753211 10 11 126788874 6999999999999999999999999999999999
Q ss_pred eeccceeEEEEEEEEeCCCCCccc---hHHHHHHHHHHH
Q 024865 222 HMIGDREWEVYRVLLDEGDGLSVP---RNKIEEGVWKLL 257 (261)
Q Consensus 222 ~t~ger~~dv~~F~i~~~~g~~l~---~~~~~~~l~~~l 257 (261)
|.|++|+|+ |||++.+|.+++ ++++.++|.+.|
T Consensus 831 -T~g~~a~D~--F~V~d~~g~~~~~~~~~~l~~~L~~~l 866 (869)
T PRK04374 831 -TFGERAEDQ--FQITDEHDRPLSESARQALRDALCACL 866 (869)
T ss_pred -ecCCEEEEE--EEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 569999997 999999999987 345555555544
No 7
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=3.1e-27 Score=242.31 Aligned_cols=175 Identities=22% Similarity=0.321 Sum_probs=148.6
Q ss_pred CceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHH
Q 024865 80 SNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGL 158 (261)
Q Consensus 80 ~~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l 158 (261)
.++.|.+.++++.++|+|+|+++||||||++|+++|+.+|+||++|+|+|+ .|++++|+|+|. .+|.+..++++++.|
T Consensus 718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~-~dg~alD~F~V~~~~g~~~~~~~~~~~l 796 (931)
T PRK05092 718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTT-TDGRALDTFWIQDAFGRDEDEPRRLARL 796 (931)
T ss_pred CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEe-cCCeEEEEEEEECCCCCCCCCHHHHHHH
Confidence 457788888888899999999999999999999999999999999999985 455999999998 778887778899999
Q ss_pred HHHHHHhhcCCceee--e----ec----C--CCCcceeee-------eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEE
Q 024865 159 SSRLWMELLQPLRVT--V----VS----R--GPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAEI 219 (261)
Q Consensus 159 ~~~L~~~L~~~~~~~--~----~~----~--~~~~~v~~~-------t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI 219 (261)
++.|.+++.+..... . .+ + ..+|+|.|+ |.|+|+|.|||||||+|+++|.++|+||++|+|
T Consensus 797 ~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I 876 (931)
T PRK05092 797 AKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHI 876 (931)
T ss_pred HHHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEE
Confidence 999999996643210 0 01 1 126778774 589999999999999999999999999999999
Q ss_pred eeeeccceeEEEEEEEEeCCCCCccc----hHHHHHHHHHHHcc
Q 024865 220 GRHMIGDREWEVYRVLLDEGDGLSVP----RNKIEEGVWKLLMG 259 (261)
Q Consensus 220 ~t~t~ger~~dv~~F~i~~~~g~~l~----~~~~~~~l~~~l~~ 259 (261)
. |.|++++|+ |||++.+|.++. .+.++++|.+.|.+
T Consensus 877 ~--T~~~~~~D~--F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~ 916 (931)
T PRK05092 877 A--TYGERAVDV--FYVTDLFGLKITNEARQAAIRRALLAALAE 916 (931)
T ss_pred E--EcCCEEEEE--EEEeCCCCCcCCCHHHHHHHHHHHHHHhcC
Confidence 9 579999997 999999999997 25677787777754
No 8
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=2.1e-27 Score=241.06 Aligned_cols=171 Identities=16% Similarity=0.164 Sum_probs=135.4
Q ss_pred ceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHH
Q 024865 81 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLS 159 (261)
Q Consensus 81 ~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~ 159 (261)
.+.|.+.+++..+.|+|+|+|+||||||++|+++|+.+|+||++|+|+|+.+| +++|+|+|. ++|. ..+++++++|+
T Consensus 665 ~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g-~~ld~f~V~~~~~~-~~~~~~~~~i~ 742 (856)
T PRK03059 665 TPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHG-YALDTFQVLDPEED-VHYRDIINLVE 742 (856)
T ss_pred CCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCC-eEEEEEEEeCCCCC-CChHHHHHHHH
Confidence 45666888888899999999999999999999999999999999999987556 999999998 5555 45667999999
Q ss_pred HHHHHhhcCCceee--ee---cC-----CCCcceeee-------eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeee
Q 024865 160 SRLWMELLQPLRVT--VV---SR-----GPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRH 222 (261)
Q Consensus 160 ~~L~~~L~~~~~~~--~~---~~-----~~~~~v~~~-------t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~ 222 (261)
+.|.++|.++.... .. ++ ..++.|.|+ |.|+|+|.|||||||+|+.+|+++|+||++|||.|
T Consensus 743 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T- 821 (856)
T PRK03059 743 HELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINT- 821 (856)
T ss_pred HHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEee-
Confidence 99999998754211 10 11 115667663 69999999999999999999999999999999994
Q ss_pred eccceeEEEEEEEEeCCCCCccc-hHHHHHHHHHHH
Q 024865 223 MIGDREWEVYRVLLDEGDGLSVP-RNKIEEGVWKLL 257 (261)
Q Consensus 223 t~ger~~dv~~F~i~~~~g~~l~-~~~~~~~l~~~l 257 (261)
.|++|+|+ |||++.+...-. .+.+++.|.+.|
T Consensus 822 -~~~~v~Dv--F~V~~~~~~~~~~~~~l~~~L~~~L 854 (856)
T PRK03059 822 -LGERVEDT--FLIDGSGLSDNRLQIQLETELLDAL 854 (856)
T ss_pred -cCCEEEEE--EEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 59999997 999543321111 245555555443
No 9
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=8.3e-27 Score=234.72 Aligned_cols=165 Identities=18% Similarity=0.200 Sum_probs=137.1
Q ss_pred ceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHH
Q 024865 81 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLS 159 (261)
Q Consensus 81 ~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~ 159 (261)
++.|.+.+++ .+.|+|+|+++||||||++|+++|+.+|+||++|+|+| .+++++|+|+|. ++|.+. .+++++
T Consensus 587 ~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t--~dg~~ld~F~V~~~~~~~~----~~~~l~ 659 (774)
T PRK03381 587 GVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS--HDGVAVLEFVVSPRFGSPP----DAALLR 659 (774)
T ss_pred CCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcc----hHHHHH
Confidence 5778888888 89999999999999999999999999999999999995 445999999998 666542 368899
Q ss_pred HHHHHhhcCCcee--e---e--e---cC----CCCcceeee-------eeeEEEeCCcccHHHHHHHHHHhCCceEEEEE
Q 024865 160 SRLWMELLQPLRV--T---V--V---SR----GPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAE 218 (261)
Q Consensus 160 ~~L~~~L~~~~~~--~---~--~---~~----~~~~~v~~~-------t~iev~~~DRpGLL~dI~~~l~~~~l~I~~Ak 218 (261)
++|.++|.++... . . . .+ ..++.|.|+ |+|+|+|.|||||||+|+.+|+++|+||++||
T Consensus 660 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~Ak 739 (774)
T PRK03381 660 QDLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWAR 739 (774)
T ss_pred HHHHHHHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEE
Confidence 9999999875321 0 0 0 00 114566553 69999999999999999999999999999999
Q ss_pred EeeeeccceeEEEEEEEEeCCCCCccchHHHHHHHHHHHc
Q 024865 219 IGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM 258 (261)
Q Consensus 219 I~t~t~ger~~dv~~F~i~~~~g~~l~~~~~~~~l~~~l~ 258 (261)
|. |.|++|+|+ |||++.+|.+++.. ++.|++.|.
T Consensus 740 I~--T~g~~a~D~--F~V~d~~g~~~~~~--~~~l~~~L~ 773 (774)
T PRK03381 740 VA--TLGADVVDV--FYVTGAAGGPLADA--RAAVEQAVL 773 (774)
T ss_pred Ee--ecCCeEEEE--EEEECCCCCcCchH--HHHHHHHhh
Confidence 99 569999997 99999999999843 677777664
No 10
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.86 E-value=1.8e-21 Score=140.02 Aligned_cols=69 Identities=20% Similarity=0.222 Sum_probs=63.3
Q ss_pred eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccchHHHHHHHHHHHcc
Q 024865 187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG 259 (261)
Q Consensus 187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~~~~~~~~l~~~l~~ 259 (261)
|+|||.|.|||||||+|+++|+++|++|++|||+ |.||+|+|+ |||++.+|+||+.++.++.|++.|+.
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIs--T~Gerv~Dv--FyV~d~~g~kl~d~~~~~~l~~~L~~ 70 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYIS--SDGGWFMDV--FHVTDQLGNKLTDDSLIAYIEKSLGT 70 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEe--ecCCeEEEE--EEEECCCCCCCCCHHHHHHHHHHhcc
Confidence 6899999999999999999999999999999999 799999998 99999999999855677777877764
No 11
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.86 E-value=3e-21 Score=139.89 Aligned_cols=67 Identities=19% Similarity=0.354 Sum_probs=58.9
Q ss_pred eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccch----HHHHHHHHHHH
Q 024865 187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPR----NKIEEGVWKLL 257 (261)
Q Consensus 187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~~----~~~~~~l~~~l 257 (261)
|+|||.|+|||||||+|+++|.++|++|++|||+ |.||+|+|+ |||++.+|.||+. +.+.++|.+.|
T Consensus 2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~--T~gera~D~--FyV~d~~g~kl~~~~~~~~l~~~L~~al 72 (75)
T cd04897 2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATID--TDGDDAHQE--YYIRHKDGRTLSTEGERQRVIKCLEAAI 72 (75)
T ss_pred EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEe--ecCceEEEE--EEEEcCCCCccCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999 799999998 9999999999983 34555554443
No 12
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.85 E-value=1e-20 Score=192.59 Aligned_cols=135 Identities=19% Similarity=0.284 Sum_probs=114.0
Q ss_pred CcEEEEecCCCCCCCcchHHHHHHHHHHHhccccccccccccccceeeccccCCCCchhhHhhhccCCCCCCCCCCCCCC
Q 024865 1 MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCS 80 (261)
Q Consensus 1 lD~F~V~d~~~~~~~~~r~~~i~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 80 (261)
+|+|+|+|.+|..++++++++|++.|.++|.++. . +.. ..+.|++.++ |..
T Consensus 719 lD~F~V~d~~g~~~~~~~~~~l~~~L~~aL~~~~-~-------~~~------~~~~~~~~~~---------------~~~ 769 (854)
T PRK01759 719 LDSFIVTELNGKLLEFDRRRQLEQALTKALNTNK-L-------KKL------NLEENHKLQH---------------FHV 769 (854)
T ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHHHHHcCCC-C-------cch------hccccccccC---------------CCC
Confidence 5999999999887667899999999999998753 1 110 0112333333 577
Q ss_pred ceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHH
Q 024865 81 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLS 159 (261)
Q Consensus 81 ~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~ 159 (261)
||.|.|+|+.+..+|+|+|.|+|||||||+|+++|.++|++|+.|||. |.|++|+|+|||+ .+|.++.++++ ++|+
T Consensus 770 ~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~--T~gerv~D~Fyv~~~~g~~l~~~~~-~~l~ 846 (854)
T PRK01759 770 KTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKIT--TIGEKAEDFFILTNQQGQALDEEER-KALK 846 (854)
T ss_pred CCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEc--ccCceEEEEEEEECCCCCcCChHHH-HHHH
Confidence 899999999999999999999999999999999999999999999999 8999999999998 88999987655 9999
Q ss_pred HHHHHhhc
Q 024865 160 SRLWMELL 167 (261)
Q Consensus 160 ~~L~~~L~ 167 (261)
++|.++|+
T Consensus 847 ~~L~~~l~ 854 (854)
T PRK01759 847 SRLLSNLS 854 (854)
T ss_pred HHHHHHhC
Confidence 99988763
No 13
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.85 E-value=1.8e-20 Score=191.32 Aligned_cols=137 Identities=21% Similarity=0.267 Sum_probs=116.3
Q ss_pred CcEEEEecCCCCCCCcchHHHHHHHHHHHhccccccccccccccceeeccccCCCCchhhHhhhccCCCCCCCCCCCCCC
Q 024865 1 MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCS 80 (261)
Q Consensus 1 lD~F~V~d~~~~~~~~~r~~~i~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 80 (261)
+|+|+|+|.+|..++++++++|++.|.++|.++. .. .+ . .++.|++.++ |..
T Consensus 743 lD~F~V~d~~g~~~~~~~~~~I~~~L~~aL~~~~-~~-----~~-~------~~~~~~~~~~---------------~~~ 794 (884)
T PRK05007 743 MDTFIVLEPDGSPLSQDRHQVIRKALEQALTQSS-PQ-----PP-K------PRRLPAKLRH---------------FNV 794 (884)
T ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHHHcCCC-CC-----cc-c------ccccccccCC---------------CCC
Confidence 5899999999887667799999999999997753 11 01 1 1223444444 577
Q ss_pred ceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHH
Q 024865 81 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLS 159 (261)
Q Consensus 81 ~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~ 159 (261)
+|.|.|+|+.+..+|+|+|.|+|||||||+|+++|.++|++|++|||. |.|++|+|+|||+ .+|.+++ +++++.|+
T Consensus 795 ~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~--T~gera~DvFyV~~~~g~~l~-~~~~~~l~ 871 (884)
T PRK05007 795 PTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARIT--TIGERVEDLFILATADRRALN-EELQQELR 871 (884)
T ss_pred CCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEe--ccCceEEEEEEEEcCCCCcCC-HHHHHHHH
Confidence 899999999999999999999999999999999999999999999999 8999999999998 7888888 67889999
Q ss_pred HHHHHhhcC
Q 024865 160 SRLWMELLQ 168 (261)
Q Consensus 160 ~~L~~~L~~ 168 (261)
++|.++|..
T Consensus 872 ~~L~~~l~~ 880 (884)
T PRK05007 872 QRLTEALNP 880 (884)
T ss_pred HHHHHHHhh
Confidence 999998854
No 14
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.84 E-value=2.6e-20 Score=190.26 Aligned_cols=141 Identities=23% Similarity=0.305 Sum_probs=117.6
Q ss_pred CcEEEEecCCCCCC--CcchHHHHHHHHHHHhccccccccccccccceeeccccCCCCchhhHhhhccCCCCCCCCCCCC
Q 024865 1 MDLFFVTDTRELLH--TRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLT 78 (261)
Q Consensus 1 lD~F~V~d~~~~~~--~~~r~~~i~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 78 (261)
+|+|+|+|++|..+ +++|+++|++.|.++|.++. .. +.. ..++.|++.++ |
T Consensus 746 lD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~~-~~------~~~-----~~~~~~~~~~~---------------~ 798 (895)
T PRK00275 746 LDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNPD-DY------PTI-----IQRRVPRQLKH---------------F 798 (895)
T ss_pred EEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCCC-cc------chh-----hhhhhhhhccC---------------C
Confidence 69999999998863 35799999999999998754 10 010 12234454444 4
Q ss_pred CCceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHH
Q 024865 79 CSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNG 157 (261)
Q Consensus 79 ~~~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~ 157 (261)
..+|.|.|+++.+.++|+|+|+|+||||||++|+++|+++|+||++|+|+| .|++|+|+|+|+ .+|.++.+++++++
T Consensus 799 ~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T--~g~~v~D~F~V~d~~g~~l~~~~~~~~ 876 (895)
T PRK00275 799 AFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIAT--LGERVEDVFFITDADNQPLSDPQLCSR 876 (895)
T ss_pred CCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEe--cCCEEEEEEEEECCCCCCCCCHHHHHH
Confidence 678999999999999999999999999999999999999999999999995 488999999998 88999988889999
Q ss_pred HHHHHHHhhcCCc
Q 024865 158 LSSRLWMELLQPL 170 (261)
Q Consensus 158 l~~~L~~~L~~~~ 170 (261)
|+++|.++|.++.
T Consensus 877 l~~~L~~~L~~~~ 889 (895)
T PRK00275 877 LQDAICEQLDARN 889 (895)
T ss_pred HHHHHHHHHhccc
Confidence 9999999996543
No 15
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.83 E-value=5.9e-20 Score=133.12 Aligned_cols=73 Identities=19% Similarity=0.367 Sum_probs=69.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhhcC
Q 024865 94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ 168 (261)
Q Consensus 94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L~~ 168 (261)
+|+|+|.|+||||||++|+++|+++|++|++|+|. |.|++|.|+|||+ .+|.++.++++++.|+++|.+++..
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~--T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATID--TDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEe--ecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999 8999999999998 8899999999999999999998853
No 16
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.82 E-value=6.5e-20 Score=132.90 Aligned_cols=69 Identities=14% Similarity=0.195 Sum_probs=60.4
Q ss_pred eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc----hHHHHHHHHHHHc
Q 024865 187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP----RNKIEEGVWKLLM 258 (261)
Q Consensus 187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~----~~~~~~~l~~~l~ 258 (261)
|+|||.|.|||||||+|+++|+++|++|++|||+-.|.||||+|+ ||| +.+|+||+ +++++++|++.|.
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~--Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDL--FIV-QSDGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEE--EEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence 479999999999999999999999999999999955589999998 999 88899997 3567777776653
No 17
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.81 E-value=4.9e-19 Score=180.12 Aligned_cols=135 Identities=19% Similarity=0.237 Sum_probs=111.0
Q ss_pred CcEEEEecCCCCCCCcchHHHHHHHHHHHhccccccccccccccceeeccccCCCCchhhHhhhccCCCCCCCCCCCCCC
Q 024865 1 MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCS 80 (261)
Q Consensus 1 lD~F~V~d~~~~~~~~~r~~~i~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 80 (261)
+|+|+|+++.+.. .+++++|++.|.++|.++. ... . . .+++.|++.++ |..
T Consensus 732 ld~f~V~~~~~~~--~~~~~~i~~~l~~~l~~~~-~~~-----~-~-----~~~~~~~~~~~---------------~~~ 782 (869)
T PRK04374 732 FDVFEVLPQDTYA--DGDPQRLAAALRQVLAGDL-QKV-----R-P-----ARRAVPRQLRH---------------FRF 782 (869)
T ss_pred EEEEEEeCCCCCC--hHHHHHHHHHHHHHHcCCC-Ccc-----c-c-----ccccCcccccC---------------CCC
Confidence 6999999988874 4678889999999998753 110 0 1 02223454444 578
Q ss_pred ceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHH
Q 024865 81 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLS 159 (261)
Q Consensus 81 ~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~ 159 (261)
+|.|.++++.+.++|+|+|+|+||||||++|+++|+++|+||++|||+| .|++|+|+|+|+ .+|.++.++++ ++|+
T Consensus 783 ~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T--~g~~a~D~F~V~d~~g~~~~~~~~-~~l~ 859 (869)
T PRK04374 783 APRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIAT--FGERAEDQFQITDEHDRPLSESAR-QALR 859 (869)
T ss_pred CCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcCChHHH-HHHH
Confidence 8999999999999999999999999999999999999999999999994 588999999998 78888776655 9999
Q ss_pred HHHHHhhc
Q 024865 160 SRLWMELL 167 (261)
Q Consensus 160 ~~L~~~L~ 167 (261)
++|.++|.
T Consensus 860 ~~L~~~l~ 867 (869)
T PRK04374 860 DALCACLD 867 (869)
T ss_pred HHHHHHhc
Confidence 99999884
No 18
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.81 E-value=2.4e-19 Score=129.90 Aligned_cols=75 Identities=63% Similarity=1.006 Sum_probs=69.6
Q ss_pred EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCC
Q 024865 95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP 169 (261)
Q Consensus 95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~ 169 (261)
|.|+|.|+|||||||+|+++|.++|++|++|||.+.|.|++++|+|||+.+|.++.++++++.|+++|.+++..|
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~~l~~~ 75 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLREEMVCP 75 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 689999999999999999999999999999999966789999999999877888999999999999999988654
No 19
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.80 E-value=6.5e-19 Score=179.32 Aligned_cols=136 Identities=21% Similarity=0.245 Sum_probs=110.7
Q ss_pred CcEEEEecCCCCCCCcchHHHHHHHHHHHhccccccccccccccceeeccccCCCCchhhHhhhccCCCCCCCCCCCCCC
Q 024865 1 MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCS 80 (261)
Q Consensus 1 lD~F~V~d~~~~~~~~~r~~~i~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 80 (261)
||+|+|+|+.+...+++|+++|++.|.++|.++. ... ... .++.|++.++ |..
T Consensus 720 ld~f~V~~~~~~~~~~~~~~~i~~~l~~~l~~~~-~~~-----~~~------~~~~~~~~~~---------------~~~ 772 (856)
T PRK03059 720 LDTFQVLDPEEDVHYRDIINLVEHELAERLAEQA-PLP-----EPS------KGRLSRQVKH---------------FPI 772 (856)
T ss_pred EEEEEEeCCCCCCChHHHHHHHHHHHHHHHcCCC-Ccc-----hhh------cccccccccC---------------CCC
Confidence 6999999988875456799999999999998753 110 111 1223555444 577
Q ss_pred ceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHH
Q 024865 81 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSS 160 (261)
Q Consensus 81 ~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~ 160 (261)
++.|.++++.+.++|+|+|+|+||||||++|+++|+.+|+||++|+|+| .|++|+|+|+|+ +.++.+++++++|++
T Consensus 773 ~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T--~~~~v~DvF~V~--~~~~~~~~~~~~l~~ 848 (856)
T PRK03059 773 TPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINT--LGERVEDTFLID--GSGLSDNRLQIQLET 848 (856)
T ss_pred CceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEee--cCCEEEEEEEEc--CCCCCCHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999995 477999999995 333456789999999
Q ss_pred HHHHhhc
Q 024865 161 RLWMELL 167 (261)
Q Consensus 161 ~L~~~L~ 167 (261)
+|.++|+
T Consensus 849 ~L~~~L~ 855 (856)
T PRK03059 849 ELLDALA 855 (856)
T ss_pred HHHHHhc
Confidence 9998874
No 20
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.80 E-value=4.2e-19 Score=127.77 Aligned_cols=68 Identities=24% Similarity=0.352 Sum_probs=64.1
Q ss_pred eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHH
Q 024865 94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLW 163 (261)
Q Consensus 94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~ 163 (261)
+|+|+|.++||||||++|+++|.++|++|+.|+|. |.|++|+|+|||+ .+|.++.++++++.|+++|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIs--T~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYIS--SDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEe--ecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999 8999999999998 88999999888888888775
No 21
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.2e-18 Score=171.22 Aligned_cols=136 Identities=21% Similarity=0.289 Sum_probs=116.0
Q ss_pred CcEEEEecCCCCCCCcchHHHHHHHHHHHhccccccccccccccceeeccccCCCCchhhHhhhccCCCCCCCCCCCCCC
Q 024865 1 MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCS 80 (261)
Q Consensus 1 lD~F~V~d~~~~~~~~~r~~~i~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 80 (261)
+|+|+|+|++|.++.+.|...++..|.+++.... . .|. .+++.||++++| ..
T Consensus 726 lDtfiv~~~~g~~~~~dr~~~~~~~l~~~l~s~~-~------~~~------~~~r~~r~~~~f---------------~i 777 (867)
T COG2844 726 LDTFIVLEPDGFPVEEDRRAALRGELIEALLSGK-A------QPP------RRRRIPRKLRHF---------------PI 777 (867)
T ss_pred eeeEEEecCCCCccchhHHHHHHHHHHHHHhcCC-C------CCc------cccccCccccee---------------cc
Confidence 6999999999998778899999999999886544 1 111 145678888884 77
Q ss_pred ceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHH
Q 024865 81 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLS 159 (261)
Q Consensus 81 ~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~ 159 (261)
+|.|.|.|+.+..+|+|+|.+.||||||+.++++|++++++|++|||. |.|++|+|+|+|+ ..|.++.+ +..+.+.
T Consensus 778 ~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkIt--T~GErveD~F~vt~~~~~~l~~-~~~q~l~ 854 (867)
T COG2844 778 PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKIT--TFGERVEDVFIVTDADGQALNA-ELRQSLL 854 (867)
T ss_pred CCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeec--cccccceeEEEEeccccccCCH-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999 8999999999998 88988854 5556677
Q ss_pred HHHHHhhc
Q 024865 160 SRLWMELL 167 (261)
Q Consensus 160 ~~L~~~L~ 167 (261)
+.|.+++.
T Consensus 855 ~~ll~al~ 862 (867)
T COG2844 855 QRLLEALL 862 (867)
T ss_pred HHHHHHhc
Confidence 77776664
No 22
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.77 E-value=1.1e-17 Score=171.95 Aligned_cols=141 Identities=23% Similarity=0.359 Sum_probs=115.6
Q ss_pred CcEEEEecCCCCC-CCcchHHHHHHHHHHHhccccccccccccccceeeccccCCCCch-hhHhhhccCCCCCCCCCCCC
Q 024865 1 MDLFFVTDTRELL-HTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPS-AIIDMLHLDMPVELPSGSLT 78 (261)
Q Consensus 1 lD~F~V~d~~~~~-~~~~r~~~i~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~~~~~~~ 78 (261)
+|+|+|++++|.. .+++++++|++.|.++|.++. ... ... ..+..|+ +.++ |
T Consensus 774 lD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~~-~~~-----~~~-----~~r~~~~~~~~~---------------~ 827 (931)
T PRK05092 774 LDTFWIQDAFGRDEDEPRRLARLAKAIEDALSGEV-RLP-----EAL-----AKRTKPKKRARA---------------F 827 (931)
T ss_pred EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCC-CCc-----ccc-----ccccCccccccC---------------C
Confidence 5899999988876 456799999999999997643 111 000 0111232 2233 5
Q ss_pred CCceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHH
Q 024865 79 CSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNG 157 (261)
Q Consensus 79 ~~~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~ 157 (261)
..+|.|.|+|+.+.++|+|+|+|+||||||++|+++|+++|+||++|+|. |.|++++|+|+|+ .+|.++.+++++++
T Consensus 828 ~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~--T~~~~~~D~F~v~d~~g~~i~~~~~~~~ 905 (931)
T PRK05092 828 HVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA--TYGERAVDVFYVTDLFGLKITNEARQAA 905 (931)
T ss_pred CCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE--EcCCEEEEEEEEeCCCCCcCCCHHHHHH
Confidence 67899999999999999999999999999999999999999999999999 5688999999998 88999988889999
Q ss_pred HHHHHHHhhcCC
Q 024865 158 LSSRLWMELLQP 169 (261)
Q Consensus 158 l~~~L~~~L~~~ 169 (261)
|+++|.++|.++
T Consensus 906 l~~~L~~~L~~~ 917 (931)
T PRK05092 906 IRRALLAALAEG 917 (931)
T ss_pred HHHHHHHHhcCc
Confidence 999999999754
No 23
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.75 E-value=1.3e-17 Score=170.21 Aligned_cols=138 Identities=21% Similarity=0.246 Sum_probs=113.2
Q ss_pred CcEEEEecCCCCCC-CcchHHHHHHHHHHHhccccccccccccccceeeccccCCCCchhhHhhhccCCCCCCCCCCCCC
Q 024865 1 MDLFFVTDTRELLH-TRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTC 79 (261)
Q Consensus 1 lD~F~V~d~~~~~~-~~~r~~~i~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 79 (261)
+|+|+|.+.+|..+ +++++++|++.|.++|.+.. +.. +... .+++.|++.++ |.
T Consensus 710 lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~~~-~~~-----~~~~----~~~~~~~~~~~---------------~~ 764 (850)
T TIGR01693 710 LDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGLA-KDP-----DTIS----ARRARRRRLQH---------------FA 764 (850)
T ss_pred EEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcCCC-ccc-----cccc----cccCCcccccC---------------CC
Confidence 58999999988864 45689999999999998743 110 1110 01113444444 56
Q ss_pred CceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHH
Q 024865 80 SNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGL 158 (261)
Q Consensus 80 ~~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l 158 (261)
.+|.|.|+|+.+.++|.|+|.|+|||||+++|+++|.++|++|++|+|. |.|+++.|+|+|+ ..|.++.+ ++++.|
T Consensus 765 ~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~--t~~~~~~d~F~v~~~~g~~~~~-~~~~~l 841 (850)
T TIGR01693 765 VPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT--TFGEKAEDVFYVTDLFGLKLTD-EEEQRL 841 (850)
T ss_pred CCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEE--ecCccceeEEEEECCCCCCCCH-HHHHHH
Confidence 7899999999999999999999999999999999999999999999999 6888999999998 78999887 788999
Q ss_pred HHHHHHhh
Q 024865 159 SSRLWMEL 166 (261)
Q Consensus 159 ~~~L~~~L 166 (261)
+++|.++|
T Consensus 842 ~~~L~~~l 849 (850)
T TIGR01693 842 LEVLAASV 849 (850)
T ss_pred HHHHHHHh
Confidence 99998876
No 24
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.75 E-value=9.2e-18 Score=121.31 Aligned_cols=72 Identities=24% Similarity=0.317 Sum_probs=64.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhh
Q 024865 94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL 166 (261)
Q Consensus 94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L 166 (261)
+++|+|+++||||||++++++|+.+|+||++|+|+|+ .+++++|+|+|+ .+|.++.++++++++++.|.++|
T Consensus 1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~-~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTT-RDGYALDTFVVLDPDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEe-CCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence 4789999999999999999999999999999999975 455999999998 77888877889999999998764
No 25
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.74 E-value=2.7e-17 Score=119.99 Aligned_cols=71 Identities=23% Similarity=0.370 Sum_probs=63.3
Q ss_pred EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhhcC
Q 024865 96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ 168 (261)
Q Consensus 96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L~~ 168 (261)
.++|+|+||||||++|+++|+++|+||++|+|+|+ .|++++|+|+|. ++|. ..+++++++++++|.++|.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt-~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTT-PDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEEC-CCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHch
Confidence 58999999999999999999999999999999974 666999999998 6555 45678999999999999865
No 26
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.72 E-value=4.7e-17 Score=118.05 Aligned_cols=72 Identities=22% Similarity=0.287 Sum_probs=65.4
Q ss_pred EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cC-CCCCCChhhHHHHHHHHHHhhcC
Q 024865 95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-AD-GKKIVDPSKQNGLSSRLWMELLQ 168 (261)
Q Consensus 95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~-g~~l~~~~~~~~l~~~L~~~L~~ 168 (261)
|+|+|+++||||||++|+++|+++|+||++|+|+| .|++++|+|+|+ ++ |.++.++++++++++.|.++|.+
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t--~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~g 74 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWT--HNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLRG 74 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEE--ECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999994 477999999997 66 78888888999999999998853
No 27
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.71 E-value=1.4e-16 Score=160.91 Aligned_cols=133 Identities=17% Similarity=0.240 Sum_probs=102.2
Q ss_pred CcEEEEecCCCCCCCcchHHHHHHHHHHHhccccccccccccccceeeccccCCCCchhhHhhhccCCCCCCCCCCCCCC
Q 024865 1 MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCS 80 (261)
Q Consensus 1 lD~F~V~d~~~~~~~~~r~~~i~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 80 (261)
+|+|+|+++.|... .++++++.|.++|.++. ....... .. .....|++.++ |..
T Consensus 640 ld~F~V~~~~~~~~---~~~~l~~~L~~~L~~~~-~~~~~~~--~~-----~~~~~~~~~~~---------------~~~ 693 (774)
T PRK03381 640 VLEFVVSPRFGSPP---DAALLRQDLRRALDGDL-DVLARLA--AR-----EAAAAAVPVRR---------------PAA 693 (774)
T ss_pred EEEEEEECCCCCcc---hHHHHHHHHHHHHcCCC-chhhhhh--cc-----ccccccccccc---------------CCC
Confidence 58999999888642 36889999999998752 1100000 00 00012233333 567
Q ss_pred ceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHH
Q 024865 81 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLS 159 (261)
Q Consensus 81 ~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~ 159 (261)
++.|.++++.+.++|+|+|+|+||||||++|+++|+.+|+||++|+|+ |.|++|+|+|+|+ .+|.++.++ ++.|+
T Consensus 694 ~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~--T~g~~a~D~F~V~d~~g~~~~~~--~~~l~ 769 (774)
T PRK03381 694 PPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVA--TLGADVVDVFYVTGAAGGPLADA--RAAVE 769 (774)
T ss_pred CcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEe--ecCCeEEEEEEEECCCCCcCchH--HHHHH
Confidence 899999999999999999999999999999999999999999999999 4588999999998 889998764 67777
Q ss_pred HHHH
Q 024865 160 SRLW 163 (261)
Q Consensus 160 ~~L~ 163 (261)
++|.
T Consensus 770 ~~L~ 773 (774)
T PRK03381 770 QAVL 773 (774)
T ss_pred HHhh
Confidence 7664
No 28
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.62 E-value=4.8e-15 Score=105.39 Aligned_cols=65 Identities=17% Similarity=0.276 Sum_probs=54.5
Q ss_pred EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhh
Q 024865 95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL 166 (261)
Q Consensus 95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L 166 (261)
.+|+|+++||||||++|+++|+++|+||++|+|+|+.+| +++|+|+|. .+|+ .-+.+.++|.++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG-~~LDtF~V~d~~~~------~~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDG-LALDIFVVTGWKRG------ETAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCC-eEEEEEEEecCCcc------chHHHHHHHHHhh
Confidence 589999999999999999999999999999999997566 999999997 5553 2245666666655
No 29
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.59 E-value=6.1e-14 Score=119.28 Aligned_cols=157 Identities=11% Similarity=0.106 Sum_probs=107.8
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcC-Cc
Q 024865 92 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ-PL 170 (261)
Q Consensus 92 ~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~-~~ 170 (261)
..+.+|+++++||||+.+.|+++|+++|+||.+.+.. ..|+.+.-++.|+ +. +.....|+.+|...-.. ..
T Consensus 6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t--~lgg~Fa~i~lvs--~~----~~~~~~le~~L~~l~~~~~L 77 (190)
T PRK11589 6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLA--MLGEEFTFIMLLS--GS----WNAITLIESTLPLKGAELDL 77 (190)
T ss_pred ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhH--hhCCceEEEEEEe--CC----hhHHHHHHHHHHhhhhhcCe
Confidence 4678999999999999999999999999999999998 6777888888885 11 23566777776654422 33
Q ss_pred eeeeec--CCCCcceeeeeeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccc--eeEEEE--EEEEeCCCCCcc
Q 024865 171 RVTVVS--RGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGD--REWEVY--RVLLDEGDGLSV 244 (261)
Q Consensus 171 ~~~~~~--~~~~~~v~~~t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ge--r~~dv~--~F~i~~~~g~~l 244 (261)
.....+ ...+........++|++.||||++++|+++|+++|+|| ....|++.+. ...+++ .|.+.-+.|..+
T Consensus 78 ~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI--~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~ 155 (190)
T PRK11589 78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNI--AELVSRTQPAEGERPAQLHIQITAHSPASQDA 155 (190)
T ss_pred EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCCh--hheEEeeecCCCCCcccEEEEEEEEcCCCCCH
Confidence 332211 10010000023799999999999999999999999999 5666666653 344453 355556677766
Q ss_pred c-hHHHHHHHHHHHc
Q 024865 245 P-RNKIEEGVWKLLM 258 (261)
Q Consensus 245 ~-~~~~~~~l~~~l~ 258 (261)
. ...-.+.+.++|+
T Consensus 156 ~~L~~~l~~l~~eL~ 170 (190)
T PRK11589 156 ANIEQAFKALCTELN 170 (190)
T ss_pred HHHHHHHHHHHHHhC
Confidence 6 2344455555553
No 30
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.58 E-value=1.8e-14 Score=104.38 Aligned_cols=69 Identities=22% Similarity=0.321 Sum_probs=58.7
Q ss_pred eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCC-CCccc----hHHHHHHHHHHHcc
Q 024865 187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGD-GLSVP----RNKIEEGVWKLLMG 259 (261)
Q Consensus 187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~-g~~l~----~~~~~~~l~~~l~~ 259 (261)
|+|||.+.||||||++|+++|+++|+||+.|+|. +.|+++.|+ |||++.+ |.++. .+.+++.|.+.|.|
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~--t~~~~~~d~--f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~g 74 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAW--THNGRLACV--IYVRDEETGAPIDDPIRLASIEDRLDNVLRG 74 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEE--EECCEEEEE--EEEEcCcCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 4799999999999999999999999999999999 458898887 9999988 88775 24566666666654
No 31
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.57 E-value=2.7e-14 Score=104.12 Aligned_cols=67 Identities=18% Similarity=0.246 Sum_probs=56.0
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc---hHHHHHHHHHHH
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP---RNKIEEGVWKLL 257 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~---~~~~~~~l~~~l 257 (261)
++||+|.|||||||+|+.+|+++|++|++|+|.| +.|+++.|+ |||++.+|.... .+.+++.|.+.|
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~T-t~~~~v~D~--F~V~d~~~~~~~~~~~~~l~~~L~~~L 71 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVST-TPDGRVLDL--FFITDARELLHTKKRREETYDYLRAVL 71 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEE-CCCCEEEEE--EEEeCCCCCCCCHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999984 478898886 999999777333 355777776554
No 32
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.53 E-value=8.8e-14 Score=100.41 Aligned_cols=55 Identities=24% Similarity=0.254 Sum_probs=49.6
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP 245 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~ 245 (261)
.++|++.|||||||+|+.+|+.+|+||+.|+|.| +.++++.|+ |||++.+|.++.
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T-~~~~~v~D~--F~v~~~~~~~~~ 57 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFT-TRDGYALDT--FVVLDPDGEPIG 57 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEE-eCCCeEEEE--EEEECCCCCCCC
Confidence 6899999999999999999999999999999984 235788886 999999999886
No 33
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.50 E-value=2.1e-13 Score=98.22 Aligned_cols=67 Identities=21% Similarity=0.489 Sum_probs=57.7
Q ss_pred eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHH
Q 024865 94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLW 163 (261)
Q Consensus 94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~ 163 (261)
.|.++|+++||||+|++|+++|+++|+||++|+++| .+++++|+|+|. .++.++ +++++++++++|-
T Consensus 1 gtri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t--~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~ 68 (72)
T cd04926 1 GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEIST--QGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIG 68 (72)
T ss_pred CeEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEec--CCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhc
Confidence 378999999999999999999999999999999984 455999999997 777776 6678877776654
No 34
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.46 E-value=5.7e-14 Score=99.90 Aligned_cols=73 Identities=74% Similarity=1.132 Sum_probs=67.9
Q ss_pred eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc----hHHHHHHHHHHHccc
Q 024865 187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP----RNKIEEGVWKLLMGW 260 (261)
Q Consensus 187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~----~~~~~~~l~~~l~~~ 260 (261)
|.+|+++.-||-.+|||+-+|+.+|+.|++|.|+++..+++.+.||.|++.+.++. ++ ++.++++|++.||||
T Consensus 1 nPVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~-~~~~~~r~~i~drv~~~lmgw 77 (77)
T cd04898 1 NPVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRL-KLGGRQRSKVVDRVTKTLMGW 77 (77)
T ss_pred CcccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCcc-ccchHHHHHHHHHHHHHHhcC
Confidence 46899999999999999999999999999999999999999999999999777555 66 688999999999999
No 35
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.42 E-value=2.1e-12 Score=91.69 Aligned_cols=69 Identities=29% Similarity=0.541 Sum_probs=61.0
Q ss_pred EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhh
Q 024865 95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL 166 (261)
Q Consensus 95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L 166 (261)
|.+.|+++|+||+|++|+++|+++|++|.+|++. +.+++++|+|++. .+|.+ .+++++++|+++|.+++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~--~~~~~~~~~f~i~~~~~~~-~~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIA--TLGERAEDVFYVTDADGQP-LDPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEE--ecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHhhC
Confidence 6799999999999999999999999999999998 4555999999998 77877 45679999999987754
No 36
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.39 E-value=6.6e-12 Score=125.00 Aligned_cols=143 Identities=14% Similarity=0.105 Sum_probs=110.9
Q ss_pred EEEEEEe-cCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhhcCCcee
Q 024865 95 TLVQIVC-QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQPLRV 172 (261)
Q Consensus 95 t~l~V~~-~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L~~~~~~ 172 (261)
-.++|.. +|++|+|++++++|+.++++|++|++. ++| .+...|.|. ..|.+.. + ..+++.+..++.+...+
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~--~~~-~~~~~~~v~~~~~~~~~-~---~~~~~~~~~~~~~~~~~ 619 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMV--ANG-PWSAEFDVRANGPQDFD-P---QEFLQAYKSGVYSELPD 619 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEe--cCC-ceEEEEEEecCCCCCCC-h---HHHHHHHHHhhcCCCCc
Confidence 4788888 999999999999999999999999999 555 888999998 5566532 2 56777888888776543
Q ss_pred eeecCCCCcce-eeeeeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccchHHHHH
Q 024865 173 TVVSRGPDTEL-LVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEE 251 (261)
Q Consensus 173 ~~~~~~~~~~v-~~~t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~~~~~~~ 251 (261)
. ...+|.+ .+.+++||.|.||||+|+.|+++|. .|..|+++ |.|-.+.|+ ||+.. | ..+..+..
T Consensus 620 ~---~~~~~~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~--~~g~~~~~~--~~~~~--~--~~r~~~~~ 684 (693)
T PRK00227 620 P---APGITATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITAS--TPGATMIVQ--AALKP--G--FDRATVER 684 (693)
T ss_pred c---cCCCCceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhc--CCCcceEEE--EEecC--c--ccHHHHHH
Confidence 2 1224444 4468999999999999999999999 88999999 788888776 99962 1 23556666
Q ss_pred HHHHHHcc
Q 024865 252 GVWKLLMG 259 (261)
Q Consensus 252 ~l~~~l~~ 259 (261)
.|.+-|-|
T Consensus 685 ~~~~~~~~ 692 (693)
T PRK00227 685 DVTRVLAG 692 (693)
T ss_pred HHHHHHhc
Confidence 66665544
No 37
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.23 E-value=9.2e-11 Score=84.44 Aligned_cols=66 Identities=24% Similarity=0.302 Sum_probs=53.8
Q ss_pred eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccchHHHHHHHHHHH
Q 024865 187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLL 257 (261)
Q Consensus 187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~~~~~~~~l~~~l 257 (261)
+.++|.+.||||+|++|+.+|+++|+||++|+|.+ .++.+.|+ |+|.+.+|.+++. +..++|++.|
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t--~~~~~~d~--f~v~~~~~~~~~~-~~~~~l~~~l 67 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEIST--QGDMAVNV--FYVTDANGNPVDP-KTIEAVRQEI 67 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEec--CCCeEEEE--EEEECCCCCcCCH-HHHHHHHHHh
Confidence 36899999999999999999999999999999984 35576665 9999999998853 3555565554
No 38
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=99.12 E-value=7.9e-10 Score=77.87 Aligned_cols=69 Identities=33% Similarity=0.568 Sum_probs=58.5
Q ss_pred EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhh
Q 024865 95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL 166 (261)
Q Consensus 95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L 166 (261)
+.|.|.++|+||+|++|+++|+.+|++|.++++. +.+++..+.|++. +++.. .++++++.+++.|.+++
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~l~~~~ 70 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARIS--TTGERALDVFYVTDSDGRP-LDPERIARLEEALEDAL 70 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEe--ecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHhhC
Confidence 4689999999999999999999999999999998 4444999999997 66665 45578899998887653
No 39
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.12 E-value=6.9e-10 Score=78.63 Aligned_cols=65 Identities=26% Similarity=0.435 Sum_probs=53.5
Q ss_pred eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccch---HHHHHHHHH
Q 024865 187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPR---NKIEEGVWK 255 (261)
Q Consensus 187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~~---~~~~~~l~~ 255 (261)
|.+.|.+.||||+|++|+++|+++|++|..|++. +.+..+.|+ |++++.+|.+... +.++++|.+
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~--~~~~~~~~~--f~i~~~~~~~~~~~~~~~i~~~l~~ 68 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIA--TLGERAEDV--FYVTDADGQPLDPERQEALRAALGE 68 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEE--ecCCEEEEE--EEEECCCCCcCCHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999998 445577665 9999999998652 445555544
No 40
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=98.96 E-value=3.5e-09 Score=87.36 Aligned_cols=122 Identities=16% Similarity=0.125 Sum_probs=84.8
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhc-CCc
Q 024865 92 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL-QPL 170 (261)
Q Consensus 92 ~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~-~~~ 170 (261)
..|.+|++++.||||+.-.++++..++|+||.++|+. ..|+.+.-+..|+ |. .+-...|++.|...=. +..
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla--~~g~~~a~i~lis--gs----~dav~~le~~l~~l~~~~~L 74 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLA--MLGEEFAGIMLIS--GS----WDAVTLLEATLPLLGAELDL 74 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHH--HhhcceeEEEEEe--eC----HHHHHHHHHHhhcccccCCe
Confidence 3578999999999999999999999999999999999 7887776666665 21 2344556665543222 222
Q ss_pred eeeeecCCCCc-ceee-eeeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeee
Q 024865 171 RVTVVSRGPDT-ELLV-ANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHM 223 (261)
Q Consensus 171 ~~~~~~~~~~~-~v~~-~t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t 223 (261)
.+...+..+.+ +-.- -..++|.+.||||++.++++.|..+|+|| +...+++
T Consensus 75 ~v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~ini--e~L~~~~ 127 (176)
T COG2716 75 LVVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINI--ENLVSRT 127 (176)
T ss_pred EEEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCch--hhceeee
Confidence 22222211100 0000 12689999999999999999999999999 4444333
No 41
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.89 E-value=1.2e-08 Score=72.68 Aligned_cols=65 Identities=9% Similarity=0.061 Sum_probs=50.6
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccchHHHHHHHHHHH
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLL 257 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~~~~~~~~l~~~l 257 (261)
.|-|+++|||||+++|+.+|..+|+||+.|+|-+... ..+-| +|+|.+.+|..- +.+.++|++.|
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~d-G~~LD--tF~V~d~~~~~~--~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDD-GLALD--IFVVTGWKRGET--AALGHALQKEI 67 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCC-CeEEE--EEEEecCCccch--HHHHHHHHHhh
Confidence 4779999999999999999999999999999975333 33545 599999887654 34566666544
No 42
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.82 E-value=4.8e-08 Score=68.63 Aligned_cols=65 Identities=29% Similarity=0.439 Sum_probs=50.8
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccch---HHHHHHHHHH
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPR---NKIEEGVWKL 256 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~~---~~~~~~l~~~ 256 (261)
.+.|.+.|+||+|++|+.+|+++|++|.++++.+ .+++..++ |++.+.+|.+.+. +.+..+|++.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~--~~~~~~~~--~~v~~~~~~~~~~~~~~~l~~~l~~~ 69 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARIST--TGERALDV--FYVTDSDGRPLDPERIARLEEALEDA 69 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEee--cCCEEEEE--EEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 5889999999999999999999999999999973 34455554 9999888777552 4455555443
No 43
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.60 E-value=6.6e-07 Score=62.00 Aligned_cols=64 Identities=22% Similarity=0.238 Sum_probs=46.5
Q ss_pred EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHh
Q 024865 95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWME 165 (261)
Q Consensus 95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~ 165 (261)
|.|.|.++||||+|++++++|+++|+||.++.+.+...+......+.+. +....+.+.++|.+.
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVV-------DEEDLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEE-------EGHGHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEEC-------CCCCHHHHHHHHHcc
Confidence 5789999999999999999999999999999999643322333333332 134556666666654
No 44
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.50 E-value=1.4e-06 Score=63.26 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=51.5
Q ss_pred eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhh
Q 024865 94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL 166 (261)
Q Consensus 94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L 166 (261)
+..|+++++||||+++.++++|+++|+||.+.+.. +.|+++.-.+.|+-+ ++..++++++|.+..
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~--~~~~~f~~~~~v~~~------~~~~~~l~~~L~~l~ 66 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQA--VLGGRFTLIMLVSIP------EDSLERLESALEELA 66 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEE--EETTEEEEEEEEEES------HHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEE--EEcCeEEEEEEEEeC------cccHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999 667788888888721 346678888877754
No 45
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.28 E-value=5.8e-06 Score=57.18 Aligned_cols=34 Identities=26% Similarity=0.182 Sum_probs=31.8
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEee
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGR 221 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t 221 (261)
.+.|.+.||||+|++|+++|+++|+||..+.+.+
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~ 35 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSS 35 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEe
Confidence 5889999999999999999999999999999874
No 46
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.19 E-value=1.4e-05 Score=58.06 Aligned_cols=63 Identities=13% Similarity=0.147 Sum_probs=46.8
Q ss_pred EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHh
Q 024865 95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWME 165 (261)
Q Consensus 95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~ 165 (261)
.+|++.++||||+.++|+++|+++|+||.+++-++ .++++.-...++.+ . ...+.|++.|...
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~--~~~~F~m~~~~~~~--~----~~~~~l~~~l~~~ 64 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAI--LGTEFALTMLVEGS--W----DAIAKLEAALPGL 64 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeE--EcCEEEEEEEEEec--c----ccHHHHHHHHHHH
Confidence 57899999999999999999999999999999984 55466444444411 1 1345666666653
No 47
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.16 E-value=1.3e-05 Score=57.84 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=39.7
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP 245 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~ 245 (261)
++.|.+.||||++++|+++|+++|+||...+-. +.+.+-.- .|.+.-+.+..+.
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~--~~~~~f~~--~~~v~~p~~~~~~ 54 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQA--VIHGRLSL--GILVQIPDSADSE 54 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccE--EEcCeeEE--EEEEEcCCCCCHH
Confidence 478999999999999999999999999776543 44433212 4667666664454
No 48
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.13 E-value=1.5e-05 Score=57.51 Aligned_cols=63 Identities=14% Similarity=0.122 Sum_probs=47.2
Q ss_pred EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhh
Q 024865 96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL 166 (261)
Q Consensus 96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L 166 (261)
.++|.++||||+.++++++|+++|+||.+.+-. +.++++.-.|.+. +.+. ..+.++++|....
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~--~~~~~f~~~~~v~~p~~~------~~~~l~~~l~~l~ 64 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQA--VIHGRLSLGILVQIPDSA------DSEALLKDLLFKA 64 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccE--EEcCeeEEEEEEEcCCCC------CHHHHHHHHHHHH
Confidence 378999999999999999999999999988755 4455766677776 4331 2356666666544
No 49
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.06 E-value=2e-05 Score=54.52 Aligned_cols=67 Identities=22% Similarity=0.375 Sum_probs=57.7
Q ss_pred EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHh
Q 024865 95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWME 165 (261)
Q Consensus 95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~ 165 (261)
|+|+|.++|+-||=.++++++...|++|..+.++ |+|....=+|+|.+....+ +-+|..|+++|.++
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~s--TDGkWCyiv~wVv~~~~~~--~~rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDS--TDGRWCYIVFWVVPRPPSI--KVRWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccc--cCCcEEEEEEEEecCCCCC--cccHHHHHHHHHhc
Confidence 5799999999999999999999999999999999 8998999999997433332 46899999998764
No 50
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=98.01 E-value=4.9e-05 Score=55.22 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=48.2
Q ss_pred eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865 94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 164 (261)
Q Consensus 94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~ 164 (261)
.+.|.|.+.||||+|++|+.++++.|+||.+..+.+...++.+.=.|.+. +.+.++++.+.+.|++
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~-----V~d~~~L~~ii~~L~~ 71 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVE-----VKDLEHLNQIIRKLRQ 71 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEE-----ESSHHHHHHHHHHHCT
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEE-----ECCHHHHHHHHHHHHC
Confidence 46899999999999999999999999999999998542355777777775 2334566666666543
No 51
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.98 E-value=7.3e-05 Score=53.54 Aligned_cols=34 Identities=12% Similarity=0.221 Sum_probs=31.6
Q ss_pred EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEE
Q 024865 96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR 129 (261)
Q Consensus 96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t 129 (261)
+|+|.++||||++++|+++|+++|+||.+.+-.+
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~ 34 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFV 34 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeee
Confidence 4789999999999999999999999999988875
No 52
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=97.95 E-value=0.0002 Score=55.96 Aligned_cols=97 Identities=15% Similarity=0.157 Sum_probs=67.6
Q ss_pred EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCCceeee
Q 024865 95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTV 174 (261)
Q Consensus 95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~~~~~~ 174 (261)
-++.|+..++||-|+..+.+|..+|+||..-.|. ..|+.-+=-..|+ +|+. -.+.|.++ +
T Consensus 4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiA--dt~dFGIiRmvV~-------~~d~---A~~~Lee~--g------ 63 (142)
T COG4747 4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIA--DTGDFGIIRMVVD-------RPDE---AHSVLEEA--G------ 63 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHcCCceEEEEec--cccCcceEEEEcC-------ChHH---HHHHHHHC--C------
Confidence 3688999999999999999999999999987777 4453322222232 1222 11222221 1
Q ss_pred ecCCCCcceeeeeeeEEEeCCcccHHHHHHHHHHhCCceEEEE
Q 024865 175 VSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSA 217 (261)
Q Consensus 175 ~~~~~~~~v~~~t~iev~~~DRpGLL~dI~~~l~~~~l~I~~A 217 (261)
..|....++-|.-.|+||=|+.|+.+|.++++|+-++
T Consensus 64 ------F~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYi 100 (142)
T COG4747 64 ------FTVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYI 100 (142)
T ss_pred ------cEEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceee
Confidence 1233345788888999999999999999999999544
No 53
>PRK00194 hypothetical protein; Validated
Probab=97.91 E-value=5.6e-05 Score=56.24 Aligned_cols=64 Identities=11% Similarity=0.207 Sum_probs=46.4
Q ss_pred eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHH
Q 024865 94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWM 164 (261)
Q Consensus 94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~ 164 (261)
...++|.++||||++++++++|+++|+||.+..-. +.++++.-.+.+. +. .+ ...+.+++.|.+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~--~~~~~~~~~~~v~~~~-~~----~~~~~l~~~l~~ 67 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQT--IMDGYFTMIMLVDISE-SK----KDFAELKEELEE 67 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhH--hhCCeeEEEEEEEecC-CC----CCHHHHHHHHHH
Confidence 57899999999999999999999999999987766 4555655555554 31 11 123556665555
No 54
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.89 E-value=0.0001 Score=53.34 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=36.1
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCC
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG 239 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~ 239 (261)
+|.+.+.||||++++|+++|+++|+||...+.+ +.|.+.-- .+.++-+
T Consensus 4 vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~--~~~~~f~~--~~~v~~~ 51 (76)
T PF13740_consen 4 VITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQA--VLGGRFTL--IMLVSIP 51 (76)
T ss_dssp EEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEE--EETTEEEE--EEEEEES
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEE--EEcCeEEE--EEEEEeC
Confidence 689999999999999999999999999999988 56666322 3555433
No 55
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.87 E-value=0.00012 Score=53.01 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=32.0
Q ss_pred EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEe
Q 024865 96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRR 130 (261)
Q Consensus 96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~ 130 (261)
.++|.++|+||+.++|+++|+++|+||.+.+..+.
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~ 35 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETY 35 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeee
Confidence 37899999999999999999999999999988843
No 56
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.86 E-value=0.0002 Score=50.81 Aligned_cols=62 Identities=3% Similarity=0.088 Sum_probs=46.4
Q ss_pred EEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865 97 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 164 (261)
Q Consensus 97 l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~ 164 (261)
+.|.+.||||+|++|+.++++.|.||.+....+. ..+.+.-.|.+. +.+.++++.+.+.|++
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~ve-----v~~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ-GRDYTVRDITVD-----APSEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEe-cCCEEEEEEEEE-----cCCHHHHHHHHHHHhc
Confidence 6789999999999999999999999998887643 334666667665 2234566666666554
No 57
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.84 E-value=7.4e-05 Score=54.23 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=30.8
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
++.+.|+||||++++|++.|+++|+||...+-.
T Consensus 3 iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~ 35 (77)
T cd04893 3 VISALGTDRPGILNELTRAVSESGCNILDSRMA 35 (77)
T ss_pred EEEEEeCCCChHHHHHHHHHHHcCCCEEEceee
Confidence 588999999999999999999999999888776
No 58
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.83 E-value=8.1e-05 Score=55.25 Aligned_cols=65 Identities=12% Similarity=0.130 Sum_probs=47.4
Q ss_pred EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhh
Q 024865 95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL 166 (261)
Q Consensus 95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L 166 (261)
..+++.++|+||++++|+++|+++|+||.+..-. +.++++.-.+.+. +. . ....+.+++.|....
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~--~~~~~f~~~~~v~~~~-~----~~~~~~L~~~l~~l~ 67 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQT--IMDGYFTMIMIVDISE-S----NLDFAELQEELEELG 67 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhH--hhCCccEEEEEEEeCC-C----CCCHHHHHHHHHHHH
Confidence 4789999999999999999999999999988877 4555665555665 31 0 112456666666543
No 59
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.77 E-value=0.00023 Score=50.89 Aligned_cols=33 Identities=18% Similarity=0.055 Sum_probs=29.7
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
++.|.|+||||++++|++.|+++|+||...+-.
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~ 33 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQF 33 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeee
Confidence 478999999999999999999999999776654
No 60
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.69 E-value=0.00021 Score=51.80 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=32.1
Q ss_pred eeeeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEee
Q 024865 185 VANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGR 221 (261)
Q Consensus 185 ~~t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t 221 (261)
|...+.|.+.||||+|++|++++++.|+||.+..+.+
T Consensus 5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~ 41 (80)
T PF13291_consen 5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINART 41 (80)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE
T ss_pred EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEE
Confidence 5567999999999999999999999999999998874
No 61
>PRK00194 hypothetical protein; Validated
Probab=97.63 E-value=0.00024 Score=52.76 Aligned_cols=31 Identities=16% Similarity=0.309 Sum_probs=28.3
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEE
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAE 218 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~Ak 218 (261)
++.|.+.||||++++|++.|+++|+||....
T Consensus 5 ~ltv~g~DrpGiva~vt~~la~~g~nI~~~~ 35 (90)
T PRK00194 5 IITVIGKDKVGIIAGVSTVLAELNVNILDIS 35 (90)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEehh
Confidence 6899999999999999999999999995544
No 62
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.61 E-value=0.00023 Score=52.75 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=31.4
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccce
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDR 227 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger 227 (261)
++.+.|+||||++++|++.|+++|+||....-. +.+.+
T Consensus 3 vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~--~~~~~ 40 (88)
T cd04872 3 VITVVGKDRVGIVAGVSTKLAELNVNILDISQT--IMDGY 40 (88)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEechhH--hhCCc
Confidence 689999999999999999999999999655543 44433
No 63
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=97.53 E-value=0.00045 Score=69.51 Aligned_cols=69 Identities=12% Similarity=0.115 Sum_probs=55.9
Q ss_pred ceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHH
Q 024865 81 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSS 160 (261)
Q Consensus 81 ~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~ 160 (261)
+|.+.|.. ++++|.+.||||+|+.++++|. .|.+|++. |.|..++|.|++.+ ......+..
T Consensus 624 ~~~~~~~~------~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~--~~g~~~~~~~~~~~-------~~~r~~~~~ 684 (693)
T PRK00227 624 ITATFWHG------NILEVRTEDRRGALGALLGVLP----DLLWITAS--TPGATMIVQAALKP-------GFDRATVER 684 (693)
T ss_pred CCceEeeC------cEEEEEeCccccHHHHHHHHhh----hhhhHhhc--CCCcceEEEEEecC-------cccHHHHHH
Confidence 56676753 7999999999999999999999 89999999 89999999999961 122456777
Q ss_pred HHHHhhcC
Q 024865 161 RLWMELLQ 168 (261)
Q Consensus 161 ~L~~~L~~ 168 (261)
++..+|.+
T Consensus 685 ~~~~~~~~ 692 (693)
T PRK00227 685 DVTRVLAG 692 (693)
T ss_pred HHHHHHhc
Confidence 77777643
No 64
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.46 E-value=0.0012 Score=47.65 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=29.9
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
.+.|.+.||||++++|++.|+++|+||...+-.
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~ 33 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTE 33 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEee
Confidence 378999999999999999999999999777765
No 65
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.42 E-value=0.00018 Score=53.60 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=27.7
Q ss_pred eeeEEEeCCcccHHHHHHHHHHhCCceEEE
Q 024865 187 NPVELSGKGRPLVFHDITLALKMLDICIFS 216 (261)
Q Consensus 187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~ 216 (261)
.+|.|.+.||||+.+.|+++|+++|+||..
T Consensus 4 avITV~GkDr~GIva~is~vLAe~~vNIld 33 (90)
T COG3830 4 AVITVIGKDRVGIVAAVSRVLAEHGVNILD 33 (90)
T ss_pred EEEEEEcCCCCchhHHHHHHHHHcCCcEEE
Confidence 379999999999999999999999999953
No 66
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.41 E-value=0.0016 Score=45.09 Aligned_cols=63 Identities=8% Similarity=0.043 Sum_probs=42.0
Q ss_pred EEEEecCCccHHHHHHHHHHHCCceEEEEEEEEee---CCCeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865 97 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQ---RGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 164 (261)
Q Consensus 97 l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t---~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~ 164 (261)
+.|.++|+||+|++|+.+|.++|+||.+....... ..+.+.-.|.+.- .+.+.++.+.+.|.+
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~-----~~~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET-----RGAEHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe-----CCHHHHHHHHHHHHH
Confidence 45788999999999999999999999976655321 1234444444431 123455666666554
No 67
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.37 E-value=0.007 Score=54.68 Aligned_cols=65 Identities=14% Similarity=0.170 Sum_probs=47.2
Q ss_pred EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865 96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 164 (261)
Q Consensus 96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~ 164 (261)
.|+|.|+||||+.|.|+++|+++|+||.+..-++...++++.-.+.++.++.. ...+.|+++|.+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~----~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFR----LEESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCC----CCHHHHHHHHHH
Confidence 58999999999999999999999999999887743234566656666522211 124566666666
No 68
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.30 E-value=0.0012 Score=49.46 Aligned_cols=66 Identities=14% Similarity=0.049 Sum_probs=47.3
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc--hHHHHHHHHHHHc
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP--RNKIEEGVWKLLM 258 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~--~~~~~~~l~~~l~ 258 (261)
.+-+...|+||-|+++-..|+++|||+ .+|..+-...+-++ |.||| |-+|. .. .+.+.+.|++.|-
T Consensus 16 slif~l~~~pGsL~~vL~~Fa~~~INL--t~IeSRP~~~~~~~-Y~FfV-Dieg~-~~~~~~~~l~~L~~~~~ 83 (90)
T cd04931 16 SLIFSLKEEVGALAKVLRLFEEKDINL--THIESRPSRLNKDE-YEFFI-NLDKK-SAPALDPIIKSLRNDIG 83 (90)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCE--EEEEeccCCCCCce-EEEEE-EEEcC-CCHHHHHHHHHHHHHhC
Confidence 455566899999999999999999999 78864444444556 57999 45565 23 2456677776553
No 69
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=97.20 E-value=0.003 Score=46.67 Aligned_cols=66 Identities=9% Similarity=0.084 Sum_probs=46.1
Q ss_pred EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhh
Q 024865 96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL 166 (261)
Q Consensus 96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L 166 (261)
.+.+...|+||.|++|+++|++.|+||.+=.+..+.+.+.---++.+. .| +++..+++.+.|.+.+
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~-~~----d~~~ieqI~kQL~Kli 69 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD-IQ----DDTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe-CC----CHHHHHHHHHHHhCCc
Confidence 689999999999999999999999999987666543332333334332 12 3456677777666543
No 70
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.20 E-value=0.0039 Score=45.33 Aligned_cols=66 Identities=12% Similarity=0.068 Sum_probs=44.6
Q ss_pred EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhh
Q 024865 95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL 166 (261)
Q Consensus 95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L 166 (261)
..+.+...|+||.|++|+++|++.|+||.+=.+.-+.+.+..-=++.+. | ++...++|.+.|.+..
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~--~----~~~~i~qi~kQL~KLi 68 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV--C----TENEATLLVSQLKKLI 68 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE--C----CHHHHHHHHHHHhCCc
Confidence 3689999999999999999999999999976555322232322233332 2 2456667777666543
No 71
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.19 E-value=0.0021 Score=46.69 Aligned_cols=64 Identities=17% Similarity=0.230 Sum_probs=41.6
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCC-ccc-hHHHHHHHHH
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGL-SVP-RNKIEEGVWK 255 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~-~l~-~~~~~~~l~~ 255 (261)
.+.+...|+||-|++|...|+++|+||.+-. .+..+..-+. +.|||.. +|. ... .+.+.+.|++
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~--s~p~~~~~~~-~~f~vd~-~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIE--SRPSKGGLWE-YVFFIDF-EGHIEDPNVAEALEELKR 68 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEE--EEEcCCCCce-EEEEEEE-ECCCCCHHHHHHHHHHHH
Confidence 4677778999999999999999999995543 2233333334 4688833 344 111 2445566655
No 72
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.19 E-value=0.0014 Score=47.29 Aligned_cols=63 Identities=13% Similarity=0.079 Sum_probs=43.9
Q ss_pred eEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccchHHHHHHHHH
Q 024865 189 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK 255 (261)
Q Consensus 189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~~~~~~~~l~~ 255 (261)
+-+...|+||-|+++-..|+.+|+|+ .+|..+.....-++ |.||| |-+|..-..+.+.+.|++
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl--~~IeSRP~~~~~~~-y~F~i-d~e~~~~~i~~~l~~l~~ 65 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINV--VHIESRKSKRRSSE-FEIFV-DCECDQRRLDELVQLLKR 65 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCE--EEEEeccCCCCCce-EEEEE-EEEcCHHHHHHHHHHHHH
Confidence 34455899999999999999999999 78865554444456 57999 445654322445555554
No 73
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=97.19 E-value=0.0041 Score=47.12 Aligned_cols=67 Identities=9% Similarity=0.108 Sum_probs=45.5
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhh
Q 024865 93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL 166 (261)
Q Consensus 93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L 166 (261)
+...+.+...|+||.|++|++.|++.|+||.+=...-+.+.+..-=+..+ . + ++..+++.+.|.+..
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv-~-~-----~~~i~Qi~kQL~KLi 73 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLV-N-D-----DQRLEQMISQIEKLE 73 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEE-c-C-----chHHHHHHHHHhCCc
Confidence 44579999999999999999999999999997665543333222222222 2 1 346666766666533
No 74
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.19 E-value=0.0034 Score=56.86 Aligned_cols=70 Identities=10% Similarity=0.050 Sum_probs=48.3
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhh
Q 024865 93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL 166 (261)
Q Consensus 93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L 166 (261)
....++|.++||||+.+.|+++|+++|+||.+.+..+...++.+.-.+.+.-+.. +...+.|+++|.+.-
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~----~~~~~~L~~~L~~l~ 74 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGL----IFNLETLRADFAALA 74 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCC----CCCHHHHHHHHHHHH
Confidence 4678999999999999999999999999999988884225544333333331111 123567777666543
No 75
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.18 E-value=0.0018 Score=43.55 Aligned_cols=46 Identities=17% Similarity=0.322 Sum_probs=39.0
Q ss_pred EEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865 97 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 143 (261)
Q Consensus 97 l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~ 143 (261)
+.|..+|+||.+++++.+|.++|+||.+..+... .++.++-.|.++
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~-~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAET-RGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEc-cCCcEEEEEEEC
Confidence 4578899999999999999999999999998854 356887777774
No 76
>PRK08577 hypothetical protein; Provisional
Probab=97.16 E-value=0.0097 Score=47.81 Aligned_cols=69 Identities=16% Similarity=0.221 Sum_probs=48.1
Q ss_pred CCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHH
Q 024865 91 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWM 164 (261)
Q Consensus 91 ~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~ 164 (261)
....+.+.|.+.|+||+|++|+++|+++++||.+....+...++.+.-.|.+. ++. +..++.+.+.|.+
T Consensus 53 ~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~-----~~~l~~l~~~L~~ 122 (136)
T PRK08577 53 GKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS-----DIDLEELEEELKK 122 (136)
T ss_pred CccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc-----hhhHHHHHHHHHc
Confidence 34578999999999999999999999999999987776433244554555554 222 1244555555543
No 77
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.14 E-value=0.0022 Score=45.41 Aligned_cols=32 Identities=19% Similarity=0.112 Sum_probs=29.2
Q ss_pred eEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 189 VELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
+.|.+.||||+|++|+.++++.|.||......
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~ 33 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLV 33 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEE
Confidence 68899999999999999999999999776665
No 78
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.14 E-value=0.0035 Score=44.81 Aligned_cols=59 Identities=17% Similarity=0.290 Sum_probs=42.0
Q ss_pred EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865 96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 164 (261)
Q Consensus 96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~ 164 (261)
.+.|.+.||+|+|++|+.+++..|+||.+..+. +.| . -.|.+. +.+.++++.+.++|++
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~--~~~-~--i~l~i~-----v~~~~~L~~li~~L~~ 60 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEID--PKG-R--IYLNFP-----TIEFEKLQTLMPEIRR 60 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEe--cCC-e--EEEEeE-----ecCHHHHHHHHHHHhC
Confidence 478999999999999999999999999988886 334 3 112232 1234556666555543
No 79
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.13 E-value=0.0047 Score=43.81 Aligned_cols=63 Identities=10% Similarity=0.035 Sum_probs=43.6
Q ss_pred EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChh-hHHHHHHHHHH
Q 024865 96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPS-KQNGLSSRLWM 164 (261)
Q Consensus 96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~-~~~~l~~~L~~ 164 (261)
.+.|.+.|+||++++|+.+++++|+||......+ ..++.+.=.|.+.. .+.+ .++.+.++|++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~-~~~~~~~i~~~v~v-----~~~~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNI-PIHGRANVTISIDT-----STMNGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCC-CCCCeEEEEEEEEc-----CchHHHHHHHHHHHhc
Confidence 4789999999999999999999999999765442 12335555566641 1223 55666666554
No 80
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=97.12 E-value=0.0018 Score=46.53 Aligned_cols=63 Identities=8% Similarity=0.037 Sum_probs=42.1
Q ss_pred eEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccchHHHHHHHHH
Q 024865 189 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK 255 (261)
Q Consensus 189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~~~~~~~~l~~ 255 (261)
+-+...|+||-|++|-..|+++|||+ .+|..+....+-++ |.||| |-+|..-..+++.+.|++
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNl--t~IeSRP~~~~~~~-y~Ffv-d~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNL--THIESRPSRRNGSE-YEFFV-DCEVDRGDLDQLISSLRR 65 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcE--EEEECCCCCCCCce-EEEEE-EEEcChHHHHHHHHHHHH
Confidence 34555889999999999999999999 78864444334445 57999 555632222344455444
No 81
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.10 E-value=0.016 Score=52.57 Aligned_cols=36 Identities=8% Similarity=0.110 Sum_probs=33.2
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEE
Q 024865 93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS 128 (261)
Q Consensus 93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~ 128 (261)
...+|+|.|+||||+.|.|+++|+++|+||.+..-+
T Consensus 8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~ 43 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF 43 (289)
T ss_pred cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence 356899999999999999999999999999988876
No 82
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.10 E-value=0.00077 Score=50.21 Aligned_cols=66 Identities=12% Similarity=0.203 Sum_probs=44.9
Q ss_pred eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhh
Q 024865 94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL 166 (261)
Q Consensus 94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L 166 (261)
...++|.++||||+-|.++++|+++|+||++ |+-+--.++.--.+.|. ++. ......+++.|....
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIld--isQtvm~~~ftm~~lV~~~~~-----~~d~~~lr~~l~~~~ 69 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILD--ISQTVMDGFFTMIMLVDISKE-----VVDFAALRDELAAEG 69 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEE--HHHHHHhhhceeeeEEcCChH-----hccHHHHHHHHHHHH
Confidence 4689999999999999999999999999994 54222233555555665 211 123455666665544
No 83
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=97.07 E-value=0.0059 Score=50.51 Aligned_cols=65 Identities=8% Similarity=0.163 Sum_probs=47.9
Q ss_pred EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhh
Q 024865 96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL 166 (261)
Q Consensus 96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L 166 (261)
.+.|...|+||.|++|+++|++.|+||.+--+..+.+.+...=+|.|. + ++...+.+.+.|.+..
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~--~----d~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV--G----DDKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE--C----CHHHHHHHHHHHhcCc
Confidence 688999999999999999999999999987776432233555555554 2 2456677777776654
No 84
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.05 E-value=0.0057 Score=42.97 Aligned_cols=64 Identities=13% Similarity=0.178 Sum_probs=42.6
Q ss_pred EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865 96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 164 (261)
Q Consensus 96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~ 164 (261)
-+.|.+.|+||++++++.+|.++|+||......+...++.+.=.|.+.. .+.+..+.+.+.|.+
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~-----~~~~~l~~~i~~L~~ 65 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE-----TSEAALNAALAEIEA 65 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc-----CCHHHHHHHHHHHHc
Confidence 4678899999999999999999999999877653222234433343321 223455555555543
No 85
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.03 E-value=0.0057 Score=42.62 Aligned_cols=45 Identities=9% Similarity=0.200 Sum_probs=36.4
Q ss_pred EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865 95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 143 (261)
Q Consensus 95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~ 143 (261)
..+.|..+|+||.|++++.+|.++|+||.+..++ ..++. -++.+.
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~--~~~~~--~~~rl~ 46 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIA--DTSEF--GILRLI 46 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEE--ecCCC--CEEEEE
Confidence 4688999999999999999999999999988876 44433 455554
No 86
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=97.03 E-value=0.0073 Score=50.19 Aligned_cols=66 Identities=8% Similarity=0.123 Sum_probs=48.1
Q ss_pred EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhh
Q 024865 95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL 166 (261)
Q Consensus 95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L 166 (261)
..+.|...|+||.|++|+++|+++|+||.+--+..+.+.+...=+|.|. | ++...+++...|.+..
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~--~----~~~~i~qi~kQl~KLi 68 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS--G----DEQVIEQITKQLNKLI 68 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE--C----CHHHHHHHHHHHhccc
Confidence 3688999999999999999999999999987666432233454455554 2 3456677777777654
No 87
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.97 E-value=0.0012 Score=47.26 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=30.3
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
.++|.+.||+|+|++|+.++++.|+||.+..+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~ 34 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEID 34 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEe
Confidence 378999999999999999999999999887775
No 88
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.96 E-value=0.0068 Score=50.98 Aligned_cols=66 Identities=12% Similarity=0.213 Sum_probs=46.5
Q ss_pred EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhh
Q 024865 95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL 166 (261)
Q Consensus 95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L 166 (261)
..+.|.+.|+||++++|+++|++.|+||.+=....+.+.+..--++.+. + ++...+.|.+.|.+..
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~--~----~~~~ieqL~kQL~KLi 68 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP--G----DDRTIEQLTKQLYKLV 68 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE--C----CHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999976665433444443333332 1 1223667777777654
No 89
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=96.94 E-value=0.054 Score=49.12 Aligned_cols=67 Identities=7% Similarity=0.068 Sum_probs=46.8
Q ss_pred eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhh
Q 024865 94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL 166 (261)
Q Consensus 94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L 166 (261)
...++|.++||||+.+.++++|+++|+||.+..-.+...++.+.-.+.+. +.+. ....|+++|.+.-
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~------~~~~L~~~L~~l~ 74 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL------DEDALRAGFAPIA 74 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC------CHHHHHHHHHHHH
Confidence 46899999999999999999999999999987776433333444344444 3221 2456666666543
No 90
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=96.90 E-value=0.0034 Score=56.89 Aligned_cols=32 Identities=19% Similarity=0.054 Sum_probs=28.7
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEee
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGR 221 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t 221 (261)
++.|.|.||||+++.|++.|+++|+||. .+++
T Consensus 9 vitv~G~DrpGIVa~VT~~La~~~vNI~--dls~ 40 (286)
T PRK13011 9 VLTLSCPSAAGIVAAVTGFLAEHGCYIT--ELHS 40 (286)
T ss_pred EEEEEeCCCCCHHHHHHHHHHhCCCCEE--Eeee
Confidence 6899999999999999999999999994 4543
No 91
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.90 E-value=0.011 Score=43.05 Aligned_cols=65 Identities=14% Similarity=0.082 Sum_probs=47.6
Q ss_pred EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhh
Q 024865 95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL 166 (261)
Q Consensus 95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L 166 (261)
..+.+...|+||.|++++++|...|+||.+=....+.+++..-=++.|. ++...+.|.+.|.+..
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-------~~~~i~ql~kQL~KL~ 68 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-------SERPIDLLSSQLNKLV 68 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-------CCchHHHHHHHHhcCc
Confidence 4689999999999999999999999999987777544554444444442 2345667777766543
No 92
>PRK11899 prephenate dehydratase; Provisional
Probab=96.84 E-value=0.0042 Score=56.10 Aligned_cols=55 Identities=7% Similarity=0.066 Sum_probs=43.0
Q ss_pred eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc
Q 024865 187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP 245 (261)
Q Consensus 187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~ 245 (261)
|.+=+...|+||.||+|-.+|++.|||+ .||..+-.+.+-++ |.||| |.+|..-.
T Consensus 195 tsl~~~~~~~pGaL~~vL~~Fa~~gINL--tkIeSRP~~~~~~~-Y~F~i-d~eg~~~d 249 (279)
T PRK11899 195 TTFVFRVRNIPAALYKALGGFATNGVNM--TKLESYMVGGSFTA-TQFYA-DIEGHPED 249 (279)
T ss_pred EEEEEEeCCCCChHHHHHHHHHHcCCCe--eeEEeeecCCCCce-EEEEE-EEECCCCC
Confidence 4555566899999999999999999999 88965555566666 68999 66676443
No 93
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=96.81 E-value=0.0045 Score=52.79 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=30.5
Q ss_pred EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEE
Q 024865 95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS 128 (261)
Q Consensus 95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~ 128 (261)
..++|++.||||+.++++++|+++|+||.+=+-.
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~ 129 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSR 129 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEe
Confidence 6899999999999999999999999999754444
No 94
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.81 E-value=0.018 Score=39.63 Aligned_cols=62 Identities=8% Similarity=0.111 Sum_probs=42.0
Q ss_pred EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHH
Q 024865 96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW 163 (261)
Q Consensus 96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~ 163 (261)
.+.+.+.|+||++++|+.+|.++|++|......+...++.+.=.|.+.. .+ ...+.+.+.|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~l~~~l~ 63 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG-----DD-DVIEQIVKQLN 63 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC-----CH-HHHHHHHHHHh
Confidence 4678899999999999999999999999877663212334443444431 12 34555555554
No 95
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.80 E-value=0.0074 Score=53.64 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=34.4
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEE
Q 024865 93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR 129 (261)
Q Consensus 93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t 129 (261)
..+++++.|+|+||+.++|++.|..+|+||.++.=++
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~ 42 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFD 42 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeeccccc
Confidence 5689999999999999999999999999999988873
No 96
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.78 E-value=0.021 Score=39.76 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=31.1
Q ss_pred EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEE
Q 024865 95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR 129 (261)
Q Consensus 95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t 129 (261)
..+.|..+|+||-|+++++.|+++|+||.+.....
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~ 36 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILE 36 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEE
Confidence 36788999999999999999999999999776664
No 97
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.77 E-value=0.019 Score=41.48 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=42.8
Q ss_pred EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCC-CeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865 95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 164 (261)
Q Consensus 95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g-~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~ 164 (261)
+.+.+..+|+||-|+++..+|.++|+||.+-... +.+ +...=.|+|+.++. .. +...+.+-+.|.+
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~--p~~~~~~~~~f~vd~~~~-~~-~~~~~~~l~~l~~ 68 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESR--PSKGGLWEYVFFIDFEGH-IE-DPNVAEALEELKR 68 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEE--EcCCCCceEEEEEEEECC-CC-CHHHHHHHHHHHH
Confidence 4577788999999999999999999999865433 442 23334577763343 12 2344444444443
No 98
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=96.76 E-value=0.006 Score=40.90 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=29.6
Q ss_pred eEEEeCCcccHHHHHHHHHHhCCceEEEEEEee
Q 024865 189 VELSGKGRPLVFHDITLALKMLDICIFSAEIGR 221 (261)
Q Consensus 189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t 221 (261)
++|...|+||.|.+|+.+|.+.|+||.+..+..
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~ 33 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAE 33 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEE
Confidence 467889999999999999999999998888764
No 99
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.74 E-value=0.01 Score=40.70 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=30.1
Q ss_pred eEEEeCCcccHHHHHHHHHHhCCceEEEEEEee
Q 024865 189 VELSGKGRPLVFHDITLALKMLDICIFSAEIGR 221 (261)
Q Consensus 189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t 221 (261)
+.|.+.|+||+|++|+++|+++|++|.+.....
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~ 34 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGR 34 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEec
Confidence 678999999999999999999999998888763
No 100
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=96.72 E-value=0.0086 Score=42.72 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=40.0
Q ss_pred EEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCC--ccchHHHHHHHHHH
Q 024865 191 LSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGL--SVPRNKIEEGVWKL 256 (261)
Q Consensus 191 v~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~--~l~~~~~~~~l~~~ 256 (261)
+.-.|+||-|++|..+|+++|+|| -+|.++-.....+. +.||| +-+|. .-..+.+.+.|++.
T Consensus 4 ~~l~d~pG~L~~vL~~f~~~~vni--~~I~Srp~~~~~~~-~~f~i-d~~~~~~~~~~~~~l~~l~~~ 67 (75)
T cd04880 4 FSLKNKPGALAKALKVFAERGINL--TKIESRPSRKGLWE-YEFFV-DFEGHIDDPDVKEALEELKRV 67 (75)
T ss_pred EEeCCcCCHHHHHHHHHHHCCCCE--EEEEeeecCCCCce-EEEEE-EEECCCCCHHHHHHHHHHHHh
Confidence 445799999999999999999999 45543332222334 46888 44453 22234566666653
No 101
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=96.67 E-value=0.0095 Score=53.84 Aligned_cols=33 Identities=12% Similarity=0.003 Sum_probs=29.4
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
++.|.|+||||+++.|+..|+++|+||....=.
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~ 34 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQH 34 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEE
Confidence 588999999999999999999999999665533
No 102
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.64 E-value=0.0096 Score=42.15 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=28.5
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEE
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEI 219 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI 219 (261)
.+.|.+.||||+|++|+++++++|+||....-
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~ 33 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQ 33 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEe
Confidence 37899999999999999999999999966554
No 103
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.61 E-value=0.015 Score=39.88 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=28.9
Q ss_pred eEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 189 VELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
+.+.+.||||.|.+|+..|+++|++|.+....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~ 33 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVS 33 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEE
Confidence 57889999999999999999999999877654
No 104
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.60 E-value=0.02 Score=39.28 Aligned_cols=46 Identities=22% Similarity=0.467 Sum_probs=34.6
Q ss_pred EEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEE
Q 024865 97 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM 142 (261)
Q Consensus 97 l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V 142 (261)
+.+.+.|+||.+++++.+|+++|++|.+........++.+.=.|.+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v 47 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEV 47 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEe
Confidence 5788999999999999999999999998776632123344333444
No 105
>PRK04435 hypothetical protein; Provisional
Probab=96.57 E-value=0.027 Score=46.03 Aligned_cols=73 Identities=10% Similarity=0.055 Sum_probs=50.2
Q ss_pred EEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHH
Q 024865 86 IDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWM 164 (261)
Q Consensus 86 i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~ 164 (261)
|..........+.+.+.|+||+|++|..+|+++|+||..-...+ ..++.+.=.|.|. .+. ...++.|.++|++
T Consensus 61 ~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i-~~~g~a~vs~tVevs~~-----~~~L~~Li~~L~~ 134 (147)
T PRK04435 61 FDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSI-PLQGRANVTISIDTSSM-----EGDIDELLEKLRN 134 (147)
T ss_pred ccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEc-CCCCEEEEEEEEEeCCh-----HHHHHHHHHHHHc
Confidence 44445567889999999999999999999999999999654432 2334665566665 211 1255666555543
No 106
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.56 E-value=0.027 Score=39.35 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=37.0
Q ss_pred EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865 95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 143 (261)
Q Consensus 95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~ 143 (261)
+.+.+..+|+||.|++++.+|.++|+||.+....-...++...=+|.+.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~ 50 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ 50 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence 5788999999999999999999999999976654221233554455553
No 107
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.55 E-value=0.011 Score=40.50 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=36.4
Q ss_pred EEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEE
Q 024865 97 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM 142 (261)
Q Consensus 97 l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V 142 (261)
+.|.+.|+||++++|+.+|+++|+||.+........++...=.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 6789999999999999999999999998888732112455555555
No 108
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.53 E-value=0.0076 Score=47.27 Aligned_cols=64 Identities=9% Similarity=0.009 Sum_probs=44.0
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccchHHHHHHHHH
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK 255 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~~~~~~~~l~~ 255 (261)
.+-++..|+||-|++|-..|+.+|||+ .+|..+..+.+-++ |.||| |-+|..-..+.+++.|+.
T Consensus 43 Slifsl~~~pGsL~~iL~~Fa~~gINL--t~IESRP~~~~~~e-Y~FfI-dieg~~~~~~~aL~~L~~ 106 (115)
T cd04930 43 TLLFSLKEGFSSLSRILKVFETFEAKI--HHLESRPSRKEGGD-LEVLV-RCEVHRSDLLQLISSLRQ 106 (115)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCE--EEEECCcCCCCCce-EEEEE-EEEeCHHHHHHHHHHHHH
Confidence 455555899999999999999999999 78875555555566 57988 444543222334444443
No 109
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.50 E-value=0.0043 Score=42.95 Aligned_cols=32 Identities=9% Similarity=0.085 Sum_probs=27.6
Q ss_pred eEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 189 VELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
+.|...|+||+|++|+.+|+++|+||.+....
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~ 32 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHD 32 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEE
Confidence 45788999999999999999999999755543
No 110
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.49 E-value=0.0091 Score=41.92 Aligned_cols=32 Identities=31% Similarity=0.216 Sum_probs=29.1
Q ss_pred eEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 189 VELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
+.|.+.||||+|.+|+++|.++|++|......
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~ 34 (79)
T cd04881 3 LRLTVKDKPGVLAKITGILAEHGISIESVIQK 34 (79)
T ss_pred EEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEc
Confidence 67889999999999999999999999877654
No 111
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.46 E-value=0.032 Score=37.16 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=35.0
Q ss_pred EEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865 97 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 143 (261)
Q Consensus 97 l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~ 143 (261)
|.|.+.|+||.++.++.+|.+++++|....+... .++.+.-.|.+.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~~~~~ 46 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTD-DDGLATIRLTLE 46 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEEC-CCCEEEEEEEEE
Confidence 4678999999999999999999999998888732 223444444443
No 112
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=96.41 E-value=0.0047 Score=42.92 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=35.1
Q ss_pred EEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865 97 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 143 (261)
Q Consensus 97 l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~ 143 (261)
+.+.+.|+||++++++.+|+++|+||...... +.++.+.=.|.+.
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~--~~~~~a~~~~~~~ 46 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQ--TRGEIGYVVIDID 46 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhcc--CCCCEEEEEEEcC
Confidence 56799999999999999999999999866444 4444665555554
No 113
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=96.40 E-value=0.014 Score=52.94 Aligned_cols=31 Identities=13% Similarity=0.071 Sum_probs=28.5
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEE
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAE 218 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~Ak 218 (261)
+|.|.|.||||+++.|+..|+++|+||....
T Consensus 11 iitv~G~Dr~GIVA~Vs~~Lae~g~NI~dis 41 (289)
T PRK13010 11 VLTLACPSAPGIVAAVSGFLAEKGCYIVELT 41 (289)
T ss_pred EEEEECCCCCCcHHHHHHHHHHCCCCEEecc
Confidence 7999999999999999999999999995544
No 114
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.39 E-value=0.024 Score=40.02 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=28.8
Q ss_pred EEEEecCCccHHHHHHHHHHHCCceEEEEEEE
Q 024865 97 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS 128 (261)
Q Consensus 97 l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~ 128 (261)
+.|..+|+||-|++++.+|+++|+||.+-...
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~ 33 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTA 33 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEec
Confidence 67889999999999999999999999976554
No 115
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=96.38 E-value=0.018 Score=52.24 Aligned_cols=33 Identities=21% Similarity=0.076 Sum_probs=30.3
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
++.|.|.||||++++|+++|+++|+||...+-.
T Consensus 8 vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~ 40 (286)
T PRK06027 8 VLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQF 40 (286)
T ss_pred EEEEECCCCCcHHHHHHHHHHHCCCCEEEceeE
Confidence 689999999999999999999999999776655
No 116
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.37 E-value=0.0052 Score=42.83 Aligned_cols=33 Identities=18% Similarity=0.137 Sum_probs=30.0
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
.+.|...|+||.|++|+..|.+.|+||.+.-+.
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~ 35 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIA 35 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEE
Confidence 477889999999999999999999999887765
No 117
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.37 E-value=0.024 Score=38.92 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=29.5
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
.+.+.+.|+||+|.+|+..|+++|++|.+....
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~ 34 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVG 34 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEee
Confidence 477899999999999999999999999777654
No 118
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.35 E-value=0.012 Score=41.23 Aligned_cols=47 Identities=13% Similarity=0.225 Sum_probs=37.0
Q ss_pred EEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865 97 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 143 (261)
Q Consensus 97 l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~ 143 (261)
+.+..+|+||.+++++++|+++|+||.+........++.+.=+|.++
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~ 48 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD 48 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC
Confidence 46789999999999999999999999887765322455676666664
No 119
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.35 E-value=0.024 Score=38.60 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=29.1
Q ss_pred EEEEecCCccHHHHHHHHHHHCCceEEEEEEE
Q 024865 97 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS 128 (261)
Q Consensus 97 l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~ 128 (261)
+.|..+|+||-|++++++|.++|+||.+...+
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~ 33 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAF 33 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEE
Confidence 67888999999999999999999999877665
No 120
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=96.13 E-value=0.019 Score=51.69 Aligned_cols=66 Identities=12% Similarity=0.069 Sum_probs=49.2
Q ss_pred eeeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc--hHHHHHHHHH
Q 024865 186 ANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP--RNKIEEGVWK 255 (261)
Q Consensus 186 ~t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~--~~~~~~~l~~ 255 (261)
.|.+-++..|+||-|+++-.+|+..|||+ -||..+-.+.+-|+ |.||| |-+|+.=+ .+...+.|++
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINl--TkIESRP~k~~~~~-Y~F~i-D~eg~~~~~~v~~AL~el~~ 261 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINL--TKIESRPLKTGLGE-YLFFI-DIEGHIDDPLVKEALEELKE 261 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcce--eeEeecccCCCCee-EEEEE-EEecCcCcHhHHHHHHHHHh
Confidence 45677777899999999999999999999 89975556667777 57999 66666554 2344444443
No 121
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.11 E-value=0.039 Score=38.01 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=30.4
Q ss_pred EEEEEecCCccHHHHHHHHHHHCCceEEEEEEE
Q 024865 96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS 128 (261)
Q Consensus 96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~ 128 (261)
.+.+.++|+||.|++++..|++++++|.+....
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~ 34 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQF 34 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEe
Confidence 578899999999999999999999999987776
No 122
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=96.05 E-value=0.048 Score=37.98 Aligned_cols=58 Identities=10% Similarity=0.133 Sum_probs=38.9
Q ss_pred CCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhh
Q 024865 103 DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL 166 (261)
Q Consensus 103 DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L 166 (261)
|+||.|.+|+++|.+.|+||.+=.+..+.+++..-=++.+. |. +...+.|...|.+..
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~--~~----~~~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS--GD----DREIEQLVKQLEKLI 58 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE--S-----CCHHHHHHHHHHCST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe--eC----chhHHHHHHHHhccC
Confidence 78999999999999999999988887543554544444443 21 235566777776544
No 123
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=96.04 E-value=0.05 Score=55.38 Aligned_cols=77 Identities=17% Similarity=0.133 Sum_probs=54.0
Q ss_pred EEEEEcCCC-CCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHH
Q 024865 83 SVTIDNSLS-PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSR 161 (261)
Q Consensus 83 ~V~i~~~~~-~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~ 161 (261)
.|.|..... .-...|.|.+.||+|||++|+.+++..++||.+..+.+...++.+.-.|.|. +.+...+..+...
T Consensus 654 ~V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie-----V~~~~~L~~l~~~ 728 (743)
T PRK10872 654 DAVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE-----IYNLQVLGRVLGK 728 (743)
T ss_pred EeEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE-----ECCHHHHHHHHHH
Confidence 356654322 2345889999999999999999999999999998887432144666666664 2334566666666
Q ss_pred HHH
Q 024865 162 LWM 164 (261)
Q Consensus 162 L~~ 164 (261)
|.+
T Consensus 729 L~~ 731 (743)
T PRK10872 729 LNQ 731 (743)
T ss_pred Hhc
Confidence 654
No 124
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.02 E-value=0.038 Score=38.41 Aligned_cols=47 Identities=6% Similarity=-0.036 Sum_probs=39.5
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeC
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDE 238 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~ 238 (261)
+|.|.++|+.||=.|+++++.++|++|..+.++ |.|.= -.-+|.|.-
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~s--TDGkW--Cyiv~wVv~ 48 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDS--TDGRW--CYIVFWVVP 48 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccc--cCCcE--EEEEEEEec
Confidence 689999999999999999999999999999998 56653 323577754
No 125
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=96.00 E-value=0.075 Score=33.43 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=29.7
Q ss_pred EEEEecCCccHHHHHHHHHHHCCceEEEEEEEE
Q 024865 97 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR 129 (261)
Q Consensus 97 l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t 129 (261)
|.+.++|+||.|+++.++|.+++++|.......
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~ 33 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRT 33 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEE
Confidence 468899999999999999999999999887763
No 126
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=95.99 E-value=0.025 Score=53.41 Aligned_cols=65 Identities=11% Similarity=0.132 Sum_probs=46.0
Q ss_pred eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc--hHHHHHHHHH
Q 024865 187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP--RNKIEEGVWK 255 (261)
Q Consensus 187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~--~~~~~~~l~~ 255 (261)
+.+=+...|+||.|+++-.+|+..|||+ .||..+-.+.+-++ |.||| |.+|..-. .+..++.|++
T Consensus 298 tsl~~~~~~~pGaL~~~L~~Fa~~giNL--tkIeSRP~~~~~~~-Y~Ffi-d~eg~~~d~~~~~aL~~l~~ 364 (386)
T PRK10622 298 TTLLMATGQQAGALVEALLVLRNHNLIM--TKLESRPIHGNPWE-EMFYL-DVQANLRSAEMQKALKELGE 364 (386)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCe--eEEEeeecCCCCce-EEEEE-EEeCCCCCHHHHHHHHHHHH
Confidence 3444566799999999999999999999 89965545555566 57999 66675443 1334444443
No 127
>PRK07334 threonine dehydratase; Provisional
Probab=95.94 E-value=0.053 Score=51.36 Aligned_cols=65 Identities=9% Similarity=0.079 Sum_probs=48.4
Q ss_pred EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEee---CCCeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865 95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQ---RGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 164 (261)
Q Consensus 95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t---~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~ 164 (261)
+.|.|.+.||||+|++|+.+|++.++||.+....+.. .++.+.=.|.|. +.+.++++.+.+.|++
T Consensus 327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~-----V~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIE-----TRDAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEE-----eCCHHHHHHHHHHHHH
Confidence 7999999999999999999999999999988876320 233554445554 2345677777777765
No 128
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.88 E-value=0.12 Score=38.73 Aligned_cols=72 Identities=14% Similarity=0.208 Sum_probs=49.4
Q ss_pred CCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCe-EEEEEEEecCCCCCCChhhHHHHHHHHHHhhc
Q 024865 91 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGKKIVDPSKQNGLSSRLWMELL 167 (261)
Q Consensus 91 ~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~-v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~ 167 (261)
..+.|.|.+..+|+||-|+++-.+|+.+|+|+. +|.+...... -.=.|+|+-+|. .+ ...+.+-+.|.+.+.
T Consensus 11 ~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt--~IeSRP~~~~~~~Y~FfVDieg~--~~-~~~~~~l~~L~~~~~ 83 (90)
T cd04931 11 KNGVISLIFSLKEEVGALAKVLRLFEEKDINLT--HIESRPSRLNKDEYEFFINLDKK--SA-PALDPIIKSLRNDIG 83 (90)
T ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEE--EEEeccCCCCCceEEEEEEEEcC--CC-HHHHHHHHHHHHHhC
Confidence 345577778889999999999999999999998 7776554322 223578874454 12 344555566666553
No 129
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.79 E-value=0.016 Score=41.70 Aligned_cols=70 Identities=16% Similarity=0.295 Sum_probs=52.5
Q ss_pred EEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe--cCCCCCCChhhHHHHHHHHHHhh
Q 024865 97 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ--ADGKKIVDPSKQNGLSSRLWMEL 166 (261)
Q Consensus 97 l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~--~~g~~l~~~~~~~~l~~~L~~~L 166 (261)
|+++++-||-.|++++-+|..+++-|.+|.|.....+++-..+|.+- ..++.+........+.+.+.+.|
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l 74 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL 74 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999997544566777777553 33444444444566777666655
No 130
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.70 E-value=0.065 Score=36.43 Aligned_cols=32 Identities=19% Similarity=0.044 Sum_probs=28.5
Q ss_pred eEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 189 VELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
+.|.-.||||-|++++.+|+++|+||.+....
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~ 33 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAF 33 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEE
Confidence 67788999999999999999999999776654
No 131
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=95.60 E-value=0.15 Score=36.11 Aligned_cols=64 Identities=13% Similarity=0.182 Sum_probs=41.5
Q ss_pred EEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCC-CeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865 97 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 164 (261)
Q Consensus 97 l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g-~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~ 164 (261)
+.+..+|+||-|+.+..+|.++|+||. +|.+.... ....=.|+|+-+|.. ++...+.+.+.|.+
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~--~I~Srp~~~~~~~~~f~id~~~~~--~~~~~~~~l~~l~~ 66 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLT--KIESRPSRKGLWEYEFFVDFEGHI--DDPDVKEALEELKR 66 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEE--EEEeeecCCCCceEEEEEEEECCC--CCHHHHHHHHHHHH
Confidence 345668999999999999999999999 45554432 233445677633421 12344555555544
No 132
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.59 E-value=0.082 Score=37.25 Aligned_cols=32 Identities=13% Similarity=0.145 Sum_probs=28.3
Q ss_pred eEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 189 VELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
+.|.-.||||-|++++..|+++|.||.+--..
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~ 33 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTA 33 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEec
Confidence 56788999999999999999999999766554
No 133
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=95.53 E-value=0.015 Score=48.97 Aligned_cols=33 Identities=15% Similarity=0.081 Sum_probs=30.2
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
.+.|.+.||||+|++|+..|++.|+||.+=..+
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~ 36 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVG 36 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEee
Confidence 689999999999999999999999999776664
No 134
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.46 E-value=0.03 Score=38.60 Aligned_cols=33 Identities=15% Similarity=0.104 Sum_probs=29.3
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
.+.+.+.|+||.|++|++.|++++++|.+....
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~ 34 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQF 34 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEe
Confidence 367889999999999999999999999876654
No 135
>PRK08577 hypothetical protein; Provisional
Probab=95.41 E-value=0.075 Score=42.64 Aligned_cols=34 Identities=29% Similarity=0.276 Sum_probs=30.2
Q ss_pred eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
..+.|.+.||||+|++|+++|+++|++|.+....
T Consensus 57 ~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~ 90 (136)
T PRK08577 57 VEIELVVEDRPGVLAKITGLLAEHGVDILATECE 90 (136)
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEE
Confidence 3699999999999999999999999999766554
No 136
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=95.37 E-value=0.12 Score=52.44 Aligned_cols=75 Identities=9% Similarity=0.130 Sum_probs=52.7
Q ss_pred EEEEcCCC-CCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHH
Q 024865 84 VTIDNSLS-PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRL 162 (261)
Q Consensus 84 V~i~~~~~-~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L 162 (261)
|.|..... .-.+.|.|.+.||+|+|++|+.+++..++||.++...+ ..++.+.-.|.|. +.+...+..|...|
T Consensus 615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~-~~~~~~~~~~~ie-----V~~~~~L~~i~~~L 688 (702)
T PRK11092 615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEE-KDGRVYSAFIRLT-----ARDRVHLANIMRKI 688 (702)
T ss_pred eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEE-cCCCEEEEEEEEE-----ECCHHHHHHHHHHH
Confidence 56654322 23458899999999999999999999999999998763 2334555556554 23345666666665
Q ss_pred HH
Q 024865 163 WM 164 (261)
Q Consensus 163 ~~ 164 (261)
.+
T Consensus 689 r~ 690 (702)
T PRK11092 689 RV 690 (702)
T ss_pred hC
Confidence 53
No 137
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=95.24 E-value=0.025 Score=41.06 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=29.4
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
.+.+...|+||+|++|+.+|+..|+||.+=..+
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg 36 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLN 36 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEec
Confidence 588999999999999999999999999765554
No 138
>PRK06635 aspartate kinase; Reviewed
Probab=95.21 E-value=0.25 Score=46.60 Aligned_cols=104 Identities=18% Similarity=0.143 Sum_probs=63.0
Q ss_pred eEEEEEE-ecCCccHHHHHHHHHHHCCceEEEEEEEEeeCC-CeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCCce
Q 024865 94 HTLVQIV-CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLR 171 (261)
Q Consensus 94 ~t~l~V~-~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g-~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~~~ 171 (261)
...|.|. ..++||.++++..+|.++|++|.. |.++... +..-=.|.|. .+..+...+.|.+. .....
T Consensus 262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~--is~s~~~~~~~~is~~v~--------~~~~~~a~~~L~~~-~~~~~ 330 (404)
T PRK06635 262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDM--IVQNVSEDGKTDITFTVP--------RDDLEKALELLEEV-KDEIG 330 (404)
T ss_pred eEEEEECCCCCCccHHHHHHHHHHHcCCeEEE--EEecCCCCCceeEEEEEc--------HHHHHHHHHHHHHH-HHHcC
Confidence 4445444 478899999999999999999994 4432111 1233345553 12223333444441 11110
Q ss_pred eeeecCCCCcceee---eeeeEEEe---CCcccHHHHHHHHHHhCCceEEE
Q 024865 172 VTVVSRGPDTELLV---ANPVELSG---KGRPLVFHDITLALKMLDICIFS 216 (261)
Q Consensus 172 ~~~~~~~~~~~v~~---~t~iev~~---~DRpGLL~dI~~~l~~~~l~I~~ 216 (261)
. ..+.+ -..+.|.+ .|+||.+++|.++|++.|+||..
T Consensus 331 ~--------~~i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~ 373 (404)
T PRK06635 331 A--------ESVTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQM 373 (404)
T ss_pred c--------ceEEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEE
Confidence 0 01111 12577766 58999999999999999999966
No 139
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.16 E-value=0.026 Score=39.30 Aligned_cols=33 Identities=24% Similarity=0.173 Sum_probs=29.0
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
.+.|...|+||.|++|++.|+++|++|......
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~ 35 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEIL 35 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeE
Confidence 367788999999999999999999999876654
No 140
>PRK07334 threonine dehydratase; Provisional
Probab=95.15 E-value=0.089 Score=49.83 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=31.2
Q ss_pred eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
..|+|.+.||||+|++|+.++++.++||.+....
T Consensus 327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~ 360 (403)
T PRK07334 327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQ 360 (403)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 4799999999999999999999999999877765
No 141
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=95.12 E-value=0.063 Score=37.42 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=27.5
Q ss_pred EEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 190 ELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 190 ev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
-+...|+||.|++|++.|+++|+||.+-...
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~ 33 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVG 33 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEee
Confidence 4678999999999999999999999777654
No 142
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=95.09 E-value=0.14 Score=40.18 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=40.9
Q ss_pred EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEE
Q 024865 95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM 142 (261)
Q Consensus 95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V 142 (261)
.++-|...|+||=|++|+.+|.++++|+-.+..+++.. +.++=+|.+
T Consensus 70 dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek-~KAlli~r~ 116 (142)
T COG4747 70 DVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK-QKALLIVRV 116 (142)
T ss_pred eEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC-ceEEEEEEh
Confidence 47889999999999999999999999999999997544 688777765
No 143
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=95.03 E-value=0.18 Score=51.06 Aligned_cols=76 Identities=13% Similarity=0.058 Sum_probs=52.3
Q ss_pred EEEEEcCCC-CCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHH
Q 024865 83 SVTIDNSLS-PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSR 161 (261)
Q Consensus 83 ~V~i~~~~~-~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~ 161 (261)
.|.|..... .-.+.|.|.+.||+|+|++|+.+++.+++||.+..+.+. .++.+.-.|.|. +.+...+..|...
T Consensus 598 ~v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~~~~~ie-----V~~~~~L~~ii~~ 671 (683)
T TIGR00691 598 EVEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAILNITVE-----IKNYKHLLKIMLK 671 (683)
T ss_pred EEEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEEEEEEEE-----ECCHHHHHHHHHH
Confidence 356654322 234588999999999999999999999999999888742 233554445554 2334566666666
Q ss_pred HHH
Q 024865 162 LWM 164 (261)
Q Consensus 162 L~~ 164 (261)
|.+
T Consensus 672 L~~ 674 (683)
T TIGR00691 672 IKT 674 (683)
T ss_pred HhC
Confidence 553
No 144
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=95.03 E-value=0.11 Score=44.95 Aligned_cols=53 Identities=13% Similarity=0.230 Sum_probs=45.8
Q ss_pred CCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865 91 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 143 (261)
Q Consensus 91 ~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~ 143 (261)
.+....+.+.-.|+||...+++.+|.++++||...++.....|+.++-+..|+
T Consensus 145 ~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD 197 (208)
T TIGR00719 145 RGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEID 197 (208)
T ss_pred cCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeC
Confidence 44566778888999999999999999999999999998766688898888875
No 145
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.02 E-value=0.049 Score=34.35 Aligned_cols=32 Identities=28% Similarity=0.310 Sum_probs=29.0
Q ss_pred eEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 189 VELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
+.+.+.|+||++++|..+|+++|++|......
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~ 32 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQR 32 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeE
Confidence 46889999999999999999999999888765
No 146
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=94.94 E-value=0.021 Score=39.50 Aligned_cols=32 Identities=22% Similarity=0.139 Sum_probs=27.1
Q ss_pred eEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 189 VELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
+-+.+.||||+|.+|+.+|.+.|+||.+....
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~ 33 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQ 33 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhcc
Confidence 44688999999999999999999999665443
No 147
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=94.92 E-value=0.22 Score=35.57 Aligned_cols=49 Identities=8% Similarity=0.230 Sum_probs=36.4
Q ss_pred EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCC-eEEEEEEEecCC
Q 024865 96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGN-CEIDLFIMQADG 146 (261)
Q Consensus 96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~-~v~D~F~V~~~g 146 (261)
.+.+..+|+||-|+++-.+|+.+|+|+. +|.+.+..+ .-.=.|+|+-+|
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt--~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLT--HIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEE--EEECCCCCCCCceEEEEEEEEc
Confidence 3455668999999999999999999999 787655432 233457887445
No 148
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=94.84 E-value=0.08 Score=47.21 Aligned_cols=62 Identities=16% Similarity=0.142 Sum_probs=41.8
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEe---CCCCCccchHHHHHHHHH
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLD---EGDGLSVPRNKIEEGVWK 255 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~---~~~g~~l~~~~~~~~l~~ 255 (261)
++.++|+|+||+++.|+..|+++|.||..+.=-+... -..|+.. ..++.+++++++++.+..
T Consensus 9 ~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~------~g~FFmR~~f~~~~~~~~~~~l~~~f~~ 73 (287)
T COG0788 9 ILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPE------TGRFFMRVEFEGEGGPLDREALRAAFAP 73 (287)
T ss_pred EEEEecCCCCCcHHHHHHHHHHcCCceeecccccccc------cCeEEEEEEEecCCCcccHHHHHHHHHH
Confidence 7899999999999999999999999996665431111 1135542 235555555555555443
No 149
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=94.78 E-value=0.042 Score=45.49 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=30.2
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
.+.|...|+||.|++|+..|++.|+||.+--++
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~ 35 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVG 35 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEe
Confidence 588999999999999999999999999877665
No 150
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=94.77 E-value=0.84 Score=43.01 Aligned_cols=103 Identities=21% Similarity=0.220 Sum_probs=64.9
Q ss_pred CeEEEEEE---ecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCC
Q 024865 93 GHTLVQIV---CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP 169 (261)
Q Consensus 93 ~~t~l~V~---~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~ 169 (261)
+...|.|. ..++||.++++..+|.+++++|.. |.+ +..+.- =.|.|. .+..++..+.|.+.+..-
T Consensus 259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~--i~~-~~s~~~-Is~~V~--------~~d~~~a~~~L~~~~~~~ 326 (401)
T TIGR00656 259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDL--ISQ-TPSETS-ISLTVD--------ETDADEAVRALKDQSGAA 326 (401)
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEE--EEc-CCCCce-EEEEEe--------HHHHHHHHHHHHHHHHhc
Confidence 46678887 578899999999999999999973 332 112111 135553 122333444454433110
Q ss_pred ceeeeecCCCCcceeee---eeeEEEeC---CcccHHHHHHHHHHhCCceEEE
Q 024865 170 LRVTVVSRGPDTELLVA---NPVELSGK---GRPLVFHDITLALKMLDICIFS 216 (261)
Q Consensus 170 ~~~~~~~~~~~~~v~~~---t~iev~~~---DRpGLL~dI~~~l~~~~l~I~~ 216 (261)
. . ..+... ..|.|.+. ++||+++++.++|.+.|+||..
T Consensus 327 ~-~--------~~i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 327 G-L--------DRVEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred C-C--------ceEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 0 0 011111 25667774 7999999999999999999974
No 151
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=94.77 E-value=0.1 Score=38.59 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=30.1
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
.+.+...|+||+|++|+..|+..|+||.+=..+
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg 36 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVT 36 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEec
Confidence 588899999999999999999999999877765
No 152
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=94.73 E-value=0.17 Score=36.74 Aligned_cols=33 Identities=12% Similarity=0.233 Sum_probs=30.3
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
.+.+...++||.|++|+.+|+..|+||.+-..+
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~ 37 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMT 37 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEee
Confidence 588999999999999999999999999777766
No 153
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=94.47 E-value=0.052 Score=45.09 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=30.1
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
.++|...|+||.|++|+..|++.|+||.+--++
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~ 36 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVG 36 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEee
Confidence 588999999999999999999999999876665
No 154
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=94.42 E-value=0.066 Score=35.59 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=29.0
Q ss_pred eEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 189 VELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
+.|.+.|+||.+.+|+..|.+++++|....+.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~ 32 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTR 32 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeE
Confidence 46788999999999999999999999888775
No 155
>PRK04435 hypothetical protein; Provisional
Probab=94.36 E-value=0.19 Score=40.95 Aligned_cols=32 Identities=9% Similarity=0.018 Sum_probs=28.7
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEE
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEI 219 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI 219 (261)
.+.+...||||+|++|.++++++|+||..-.-
T Consensus 71 tL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q 102 (147)
T PRK04435 71 TLSLLLEDRSGTLSKVLNVIAEAGGNILTINQ 102 (147)
T ss_pred EEEEEEecCCCHHHHHHHHHHHcCCCeEEEEE
Confidence 68899999999999999999999999965543
No 156
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=94.31 E-value=0.052 Score=41.15 Aligned_cols=33 Identities=12% Similarity=0.015 Sum_probs=30.2
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
.|.+...|+||+|++|+..|+..|+||.+=-.+
T Consensus 10 tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg 42 (96)
T PRK08178 10 ILELTVRNHPGVMSHVCGLFARRAFNVEGILCL 42 (96)
T ss_pred EEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEe
Confidence 589999999999999999999999999776665
No 157
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.25 E-value=0.39 Score=34.52 Aligned_cols=50 Identities=12% Similarity=0.170 Sum_probs=37.0
Q ss_pred EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCC-CeEEEEEEEecCCC
Q 024865 96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGK 147 (261)
Q Consensus 96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g-~~v~D~F~V~~~g~ 147 (261)
.+.+..+|+||-|+++-.+|..+|+|+. +|.+.+.. ....=.|+|+-+|.
T Consensus 2 sl~~~l~~~~g~L~~iL~~f~~~~inl~--~IeSRP~~~~~~~y~F~id~e~~ 52 (74)
T cd04929 2 SVIFSLKNEVGGLAKALKLFQELGINVV--HIESRKSKRRSSEFEIFVDCECD 52 (74)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCEE--EEEeccCCCCCceEEEEEEEEcC
Confidence 3555669999999999999999999999 77766543 22334578874453
No 158
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.94 E-value=0.37 Score=33.47 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=28.5
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEE
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEI 219 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI 219 (261)
.+.+.-.|+||.|.+|+..|.++|+||.+...
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~ 34 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLV 34 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEE
Confidence 46788899999999999999999999986654
No 159
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=93.91 E-value=0.41 Score=48.42 Aligned_cols=74 Identities=18% Similarity=0.173 Sum_probs=50.9
Q ss_pred EEEEEcCC-CCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEE-EEEecCCCCCCChhhHHHHHH
Q 024865 83 SVTIDNSL-SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDL-FIMQADGKKIVDPSKQNGLSS 160 (261)
Q Consensus 83 ~V~i~~~~-~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~-F~V~~~g~~l~~~~~~~~l~~ 160 (261)
.|.|..+. ..-...|.|.+.||+|||++|+.+|+..+.||.+....+ +++.+..+ |.+. +.+-..+..|..
T Consensus 615 ~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~--~~~~~~~~~~~i~-----v~n~~~L~~i~~ 687 (701)
T COG0317 615 DVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRS--DKDQFATMQFTIE-----VKNLNHLGRVLA 687 (701)
T ss_pred EEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccc--cCCceEEEEEEEE-----ECcHHHHHHHHH
Confidence 45666663 345679999999999999999999999999999887774 33344333 3333 223345555555
Q ss_pred HHH
Q 024865 161 RLW 163 (261)
Q Consensus 161 ~L~ 163 (261)
.|.
T Consensus 688 ~l~ 690 (701)
T COG0317 688 RLK 690 (701)
T ss_pred HHh
Confidence 544
No 160
>PLN02317 arogenate dehydratase
Probab=93.68 E-value=0.25 Score=46.55 Aligned_cols=65 Identities=12% Similarity=0.147 Sum_probs=44.1
Q ss_pred eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccce--------------eEEEEEEEEeCCCCCccc--hHHHH
Q 024865 187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDR--------------EWEVYRVLLDEGDGLSVP--RNKIE 250 (261)
Q Consensus 187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger--------------~~dv~~F~i~~~~g~~l~--~~~~~ 250 (261)
|.|-+.-.|+||-|+++-.+|+..|||+ .||..+-...+ -++ |.||| |.+|..-. .++.+
T Consensus 284 TSivfsl~~~pG~L~k~L~~Fa~~~INL--tkIESRP~~~~~~~~~~~~~~~~~~~~e-Y~FyV-D~eg~~~d~~~~~aL 359 (382)
T PLN02317 284 TSIVFSLEEGPGVLFKALAVFALRDINL--TKIESRPQRKRPLRVVDDSNSGTAKYFD-YLFYV-DFEASMADPRAQNAL 359 (382)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHCCCCE--EEEEeeecCCCCcccccccccccccccc-EEEEE-EEEcCcCCHHHHHHH
Confidence 4555666899999999999999999999 78853333222 256 57999 55665433 23344
Q ss_pred HHHHH
Q 024865 251 EGVWK 255 (261)
Q Consensus 251 ~~l~~ 255 (261)
+.|++
T Consensus 360 ~~L~~ 364 (382)
T PLN02317 360 AHLQE 364 (382)
T ss_pred HHHHH
Confidence 55544
No 161
>PRK11899 prephenate dehydratase; Provisional
Probab=93.63 E-value=0.37 Score=43.53 Aligned_cols=52 Identities=12% Similarity=0.238 Sum_probs=41.5
Q ss_pred eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCe-EEEEEEEecCCC
Q 024865 94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGK 147 (261)
Q Consensus 94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~-v~D~F~V~~~g~ 147 (261)
.|.|.+..+|+||.|+++-.+|+.+|+|+. +|.+...++. -.=.|||+-+|.
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLt--kIeSRP~~~~~~~Y~F~id~eg~ 246 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMT--KLESYMVGGSFTATQFYADIEGH 246 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCee--eEEeeecCCCCceEEEEEEEECC
Confidence 577888889999999999999999999998 7887666433 333689985564
No 162
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=93.51 E-value=0.43 Score=33.20 Aligned_cols=45 Identities=16% Similarity=0.182 Sum_probs=34.4
Q ss_pred CCeEEEEEEec----CCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865 92 PGHTLVQIVCQ----DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 143 (261)
Q Consensus 92 ~~~t~l~V~~~----DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~ 143 (261)
.+...|.|.++ |.||+.+++...|++.|++|.. |+ + +.-|.|.|.
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~--is-S----~~~~~ilV~ 52 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFM--IS-S----EISISILVK 52 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECE--EE-E----SSEEEEEEE
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEE--EE-E----eeeEEEEEe
Confidence 35678888887 7999999999999999999984 33 2 334667774
No 163
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=93.50 E-value=0.27 Score=50.20 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=33.5
Q ss_pred eeeeeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 184 LVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 184 ~~~t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
.|...|.|.+.||+|||++|+.++++.++||....+.
T Consensus 664 ~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~ 700 (743)
T PRK10872 664 GYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASR 700 (743)
T ss_pred eeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeE
Confidence 4566899999999999999999999999999888775
No 164
>PRK08210 aspartate kinase I; Reviewed
Probab=93.25 E-value=1.6 Score=41.33 Aligned_cols=99 Identities=19% Similarity=0.214 Sum_probs=62.1
Q ss_pred CeEEEEEEecCC-ccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCCce
Q 024865 93 GHTLVQIVCQDH-KGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLR 171 (261)
Q Consensus 93 ~~t~l~V~~~Dr-pGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~~~ 171 (261)
+-..++|...+. ||.+++|..+|.++|+||..- .++.. . =+|.+. .+..+++.+.|.+ +.. .
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i--~~~~~--~--is~~v~--------~~~~~~a~~~l~~-~~~--~ 332 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFI--NIFPT--E--VVFTVS--------DEDSEKAKEILEN-LGL--K 332 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEE--EecCc--e--EEEEEc--------HHHHHHHHHHHHH-hCC--c
Confidence 456777766555 999999999999999999854 32111 1 135543 1223333333333 111 1
Q ss_pred eeeecCCCCcceeeeeeeEEEeC---CcccHHHHHHHHHHhCCceEEE
Q 024865 172 VTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFS 216 (261)
Q Consensus 172 ~~~~~~~~~~~v~~~t~iev~~~---DRpGLL~dI~~~l~~~~l~I~~ 216 (261)
+... ..+ ..|.|.+. ++||+++++..+|.+.|++|..
T Consensus 333 v~~~-----~~~---a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 333 PSVR-----ENC---AKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred EEEe-----CCc---EEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 1110 011 25667764 8999999999999999999964
No 165
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=93.11 E-value=0.068 Score=39.38 Aligned_cols=31 Identities=19% Similarity=0.169 Sum_probs=27.5
Q ss_pred eeEEEeCC-cccHHHHHHHHHHhCCceEEEEEEe
Q 024865 188 PVELSGKG-RPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 188 ~iev~~~D-RpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
++.|.+.| ++|.++.|+++|+++|+|| .+|.
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI--~~I~ 32 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNI--DRIR 32 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCH--HHHH
Confidence 47889999 9999999999999999999 4554
No 166
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=93.09 E-value=0.41 Score=40.00 Aligned_cols=70 Identities=11% Similarity=0.058 Sum_probs=44.6
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHH
Q 024865 93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWM 164 (261)
Q Consensus 93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~ 164 (261)
....+.|.+.||||++.+++..|..+|+||.+=.-.|...-+--.-.|+.+ .-+-|.. -....|++++.+
T Consensus 91 ~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~--~~i~~l~~~f~a 161 (176)
T COG2716 91 APVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPAN--LSISALRDAFEA 161 (176)
T ss_pred ceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCc--CcHHHHHHHHHH
Confidence 345889999999999999999999999999643332222222334456664 3333322 234556666554
No 167
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.99 E-value=0.66 Score=36.30 Aligned_cols=51 Identities=6% Similarity=0.124 Sum_probs=38.5
Q ss_pred eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeE-EEEEEEecCC
Q 024865 94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCE-IDLFIMQADG 146 (261)
Q Consensus 94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v-~D~F~V~~~g 146 (261)
.|.+.+..+|+||-|+++-.+|..+|+|+. +|.+.+..+.- .=.|+|+-+|
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt--~IESRP~~~~~~eY~FfIdieg 92 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIH--HLESRPSRKEGGDLEVLVRCEV 92 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEE--EEECCcCCCCCceEEEEEEEEe
Confidence 467777779999999999999999999999 78766653222 2247777334
No 168
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=92.86 E-value=0.36 Score=49.06 Aligned_cols=37 Identities=11% Similarity=0.018 Sum_probs=33.7
Q ss_pred eeeeeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 184 LVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 184 ~~~t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
.|...|.|.+.||+|+|.+|+.++++.++||.++...
T Consensus 624 ~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~ 660 (702)
T PRK11092 624 EFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTE 660 (702)
T ss_pred eeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEE
Confidence 4566899999999999999999999999999888875
No 169
>PRK11898 prephenate dehydratase; Provisional
Probab=92.72 E-value=0.38 Score=43.50 Aligned_cols=64 Identities=9% Similarity=0.000 Sum_probs=42.2
Q ss_pred eeEEEe-CCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc--hHHHHHHHHH
Q 024865 188 PVELSG-KGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP--RNKIEEGVWK 255 (261)
Q Consensus 188 ~iev~~-~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~--~~~~~~~l~~ 255 (261)
.+-+.- .|+||-|+++-..|+++|||+ -+|..+-...+.++ |.||| |-+|..-. .+.+++.|++
T Consensus 198 slif~l~~~~pGsL~~~L~~F~~~~INL--t~IeSRP~~~~~~~-y~F~v-d~eg~~~~~~~~~al~~L~~ 264 (283)
T PRK11898 198 SLVLTLPNNLPGALYKALSEFAWRGINL--TRIESRPTKTGLGT-YFFFI-DVEGHIDDVLVAEALKELEA 264 (283)
T ss_pred EEEEEeCCCCccHHHHHHHHHHHCCCCe--eeEecccCCCCCcc-EEEEE-EEEccCCCHHHHHHHHHHHH
Confidence 344444 357999999999999999999 78864444344556 57999 55565432 2344455444
No 170
>PLN02551 aspartokinase
Probab=92.72 E-value=1.7 Score=42.75 Aligned_cols=109 Identities=17% Similarity=0.233 Sum_probs=64.0
Q ss_pred CeEEEEEEec---CCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHH---HHhh
Q 024865 93 GHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRL---WMEL 166 (261)
Q Consensus 93 ~~t~l~V~~~---DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L---~~~L 166 (261)
+.+.|.|.+. +.+|.++++..+|.++|++|.. |.++ .. -=+|.|..+. +.. .+.+++.+ ...|
T Consensus 365 ~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~--IssS-e~---sIs~~v~~~~--~~~---~~~i~~~l~~l~~el 433 (521)
T PLN02551 365 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDV--VATS-EV---SISLTLDPSK--LWS---RELIQQELDHLVEEL 433 (521)
T ss_pred CeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEE--Eecc-CC---EEEEEEehhH--hhh---hhhHHHHHHHHHHHh
Confidence 4577788654 6899999999999999999983 4432 21 1235554211 111 11222222 2223
Q ss_pred cCCceeeeecCCCCcceeeeeeeEEEe--CCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 167 LQPLRVTVVSRGPDTELLVANPVELSG--KGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~t~iev~~--~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
.....+... ..+ ..|.|.+ ..+||+++++..+|.+.|+||+.-..+
T Consensus 434 ~~~~~V~v~-----~~v---AiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqg 481 (521)
T PLN02551 434 EKIAVVNLL-----QGR---SIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQG 481 (521)
T ss_pred hcCCeEEEe-----CCE---EEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEec
Confidence 211111110 111 2455554 368999999999999999999765554
No 171
>PRK06291 aspartate kinase; Provisional
Probab=92.70 E-value=2.7 Score=40.61 Aligned_cols=105 Identities=19% Similarity=0.140 Sum_probs=65.9
Q ss_pred CeEEEEEEec---CCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCC
Q 024865 93 GHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP 169 (261)
Q Consensus 93 ~~t~l~V~~~---DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~ 169 (261)
+.+.|.|.+. +.||+++++..+|.++|++|.. |..++.. .-=+|.|.. ...+...+.|.+.+...
T Consensus 320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~m--Isq~sse--~sIsf~V~~--------~d~~~av~~L~~~~~~~ 387 (465)
T PRK06291 320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIM--ISQGSSE--SNISLVVDE--------ADLEKALKALRREFGEG 387 (465)
T ss_pred CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEE--EEecCCC--ceEEEEEeH--------HHHHHHHHHHHHHHHHh
Confidence 4667788754 7899999999999999999984 3321111 111344431 22233344455444321
Q ss_pred ceeeeecCCCCcceeee---eeeEEEeC---CcccHHHHHHHHHHhCCceEEEEE
Q 024865 170 LRVTVVSRGPDTELLVA---NPVELSGK---GRPLVFHDITLALKMLDICIFSAE 218 (261)
Q Consensus 170 ~~~~~~~~~~~~~v~~~---t~iev~~~---DRpGLL~dI~~~l~~~~l~I~~Ak 218 (261)
. ...+.+. ..|.|.+. ++||++.++..+|.+.|++|+.--
T Consensus 388 ~---------~~~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~is 433 (465)
T PRK06291 388 L---------VRDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMIS 433 (465)
T ss_pred c---------CcceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEE
Confidence 1 0012221 25777775 799999999999999999996443
No 172
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=92.53 E-value=0.55 Score=39.19 Aligned_cols=47 Identities=13% Similarity=0.268 Sum_probs=38.4
Q ss_pred EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEE
Q 024865 96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM 142 (261)
Q Consensus 96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V 142 (261)
-+.+.+.++||.|.+++++++.+|.||..|+-+.-.+|+.+.=-|.+
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi 50 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI 50 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe
Confidence 36788999999999999999999999999999865567555433344
No 173
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=92.51 E-value=0.39 Score=48.75 Aligned_cols=38 Identities=21% Similarity=0.168 Sum_probs=34.0
Q ss_pred eeeeeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEee
Q 024865 184 LVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGR 221 (261)
Q Consensus 184 ~~~t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t 221 (261)
.|...|.|.+.||+|+|++|+.++++.++||.+....+
T Consensus 608 ~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~ 645 (683)
T TIGR00691 608 RFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKT 645 (683)
T ss_pred eeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEE
Confidence 45568999999999999999999999999998888763
No 174
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.51 E-value=0.92 Score=31.55 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=37.5
Q ss_pred EEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEE-EecCCCCCCChhhHHHHHHHHHH
Q 024865 97 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFI-MQADGKKIVDPSKQNGLSSRLWM 164 (261)
Q Consensus 97 l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~-V~~~g~~l~~~~~~~~l~~~L~~ 164 (261)
+.|.-+||||=|.+++.++.. |.||..-.=. ..+-....+++ +.- .+++..+++.++|.+
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~--~~~~~~~~v~v~ie~-----~~~~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYR--NQGGDEARVLVGIQV-----PDREDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEE--cCCCCceEEEEEEEe-----CCHHHHHHHHHHHHH
Confidence 357789999999999999999 9999854332 21211222332 221 124566677777654
No 175
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=92.18 E-value=0.8 Score=41.35 Aligned_cols=54 Identities=17% Similarity=0.304 Sum_probs=43.1
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCe-EEEEEEEecCCCC
Q 024865 93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGKK 148 (261)
Q Consensus 93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~-v~D~F~V~~~g~~ 148 (261)
..|.+.+..+|+||-|+++-++|+.+|+|.- ||.+...+.. -.=.|||+-.|..
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlT--kIESRP~k~~~~~Y~F~iD~eg~~ 247 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLT--KIESRPLKTGLGEYLFFIDIEGHI 247 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCccee--eEeecccCCCCeeEEEEEEEecCc
Confidence 4889999999999999999999999999998 8887665533 3345888854543
No 176
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=91.79 E-value=0.37 Score=41.60 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=35.4
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeecccee
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDRE 228 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~ 228 (261)
.+=+.-.||||.+..|+..|.++|+||....+++...|..|
T Consensus 150 ~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~A 190 (208)
T TIGR00719 150 AILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIA 190 (208)
T ss_pred EEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEE
Confidence 45667799999999999999999999999998876666664
No 177
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=91.68 E-value=0.52 Score=45.13 Aligned_cols=65 Identities=15% Similarity=0.089 Sum_probs=45.2
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc-hHHHHHHHHHH
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP-RNKIEEGVWKL 256 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~-~~~~~~~l~~~ 256 (261)
.|-++..|+||-|++|-.+|+++|||+ .+|..+-...+-++ +.||| +-+|..-. .+++.+.|++.
T Consensus 18 SLiFsL~d~pGaL~~vL~vFa~~gINL--thIESRPsk~~~~e-Y~FFV-D~eg~~~~~v~~aL~~Lk~~ 83 (436)
T TIGR01268 18 SLIFSLKEEAGALAETLKLFQAHDVNL--THIESRPSKTHPGE-YEFFV-EFDEASDRKLEGVIEHLRQK 83 (436)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCe--eEEecccCCCCCcc-EEEEE-EEecCccHHHHHHHHHHHHh
Confidence 455666899999999999999999999 78864444334445 46999 44465422 34566666653
No 178
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=91.53 E-value=0.56 Score=32.54 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=23.3
Q ss_pred CcccHHHHHHHHHHhCCceEEEEEEee
Q 024865 195 GRPLVFHDITLALKMLDICIFSAEIGR 221 (261)
Q Consensus 195 DRpGLL~dI~~~l~~~~l~I~~AkI~t 221 (261)
|+||.|..|+.+|...|+||.+-..+.
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~ 27 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGP 27 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeee
Confidence 789999999999999999997777763
No 179
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=91.45 E-value=0.53 Score=47.60 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=33.1
Q ss_pred eeeeeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 184 LVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 184 ~~~t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
.|...|.|.+.||+|||.+|+++|+..++||.+....
T Consensus 625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~ 661 (701)
T COG0317 625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTR 661 (701)
T ss_pred ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecc
Confidence 4566899999999999999999999999999777765
No 180
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=91.36 E-value=0.44 Score=33.13 Aligned_cols=31 Identities=29% Similarity=0.275 Sum_probs=25.4
Q ss_pred eeEEEeC----CcccHHHHHHHHHHhCCceEEEEE
Q 024865 188 PVELSGK----GRPLVFHDITLALKMLDICIFSAE 218 (261)
Q Consensus 188 ~iev~~~----DRpGLL~dI~~~l~~~~l~I~~Ak 218 (261)
.|.|.+. |.||+++.|+.+|++.||+|+.-.
T Consensus 8 ~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 8 KISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred EEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 4556555 899999999999999999997766
No 181
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=91.13 E-value=0.15 Score=37.54 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=26.7
Q ss_pred EEEEEecC-CccHHHHHHHHHHHCCceEEE
Q 024865 96 LVQIVCQD-HKGLLYDIMRTLKDYNIQVSY 124 (261)
Q Consensus 96 ~l~V~~~D-rpGLla~I~~vl~~~~l~I~~ 124 (261)
.|+|.++| +.|.+++++++|+.+|+||.+
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~ 30 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDR 30 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHH
Confidence 37899999 999999999999999999973
No 182
>PRK06382 threonine dehydratase; Provisional
Probab=90.87 E-value=1.7 Score=41.29 Aligned_cols=68 Identities=10% Similarity=0.088 Sum_probs=45.8
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEe---eCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865 92 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRR---QRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 164 (261)
Q Consensus 92 ~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~---t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~ 164 (261)
...+.+.|..+|+||-|++++.+|.++|+||.+-..... ..-+.+.=+|.|... +++..+.|.+.|.+
T Consensus 328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-----~~~~~~~v~~~L~~ 398 (406)
T PRK06382 328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-----GQDHLDRILNALRE 398 (406)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 467899999999999999999999999999986543210 112245545666411 13444566666654
No 183
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=90.37 E-value=0.71 Score=45.38 Aligned_cols=52 Identities=17% Similarity=0.309 Sum_probs=42.6
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865 92 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 143 (261)
Q Consensus 92 ~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~ 143 (261)
+.+..+.+...|+||..+.++.+|..+++||...++.....|+.++-++.++
T Consensus 450 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D 501 (526)
T PRK13581 450 PEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVD 501 (526)
T ss_pred CCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECC
Confidence 3555667777999999999999999999999988887544677888777764
No 184
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=89.89 E-value=0.52 Score=46.32 Aligned_cols=52 Identities=17% Similarity=0.340 Sum_probs=43.0
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865 92 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 143 (261)
Q Consensus 92 ~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~ 143 (261)
..+..+.+.-.|+||....++.+|.++++||...++.....|+.++-++.++
T Consensus 449 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D 500 (525)
T TIGR01327 449 PEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLD 500 (525)
T ss_pred cCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcC
Confidence 3445666677999999999999999999999988887656678888777774
No 185
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=89.70 E-value=0.53 Score=44.82 Aligned_cols=49 Identities=12% Similarity=0.215 Sum_probs=42.3
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865 93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 143 (261)
Q Consensus 93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~ 143 (261)
....|.|.-+|+||.+++|+.+|+++|+||..-+.. ..|+++.-+|-++
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~--~~~~~A~~iie~D 385 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQ--TDGEIGYVVIDVD 385 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheec--cCCCEEEEEEEeC
Confidence 556788899999999999999999999999877776 6777888887664
No 186
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=89.51 E-value=0.83 Score=44.00 Aligned_cols=65 Identities=9% Similarity=-0.048 Sum_probs=43.7
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccchHHHHHHHHH
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK 255 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~~~~~~~~l~~ 255 (261)
.|=++-.|+||-|+++-++|+++|||+ -+|..+-...+-++.+.||| +-+|..-..+++.+.|++
T Consensus 33 SLIFsL~d~pGaL~~vL~vFa~~gINL--ThIESRPsk~~~~e~Y~FfV-D~Eg~~~~l~~aL~~Lk~ 97 (464)
T TIGR01270 33 SIIFSLSNVVGDLSKAIAIFQDRHINI--LHLESRDSKDGTSKTMDVLV-DVELFHYGLQEAMDLLKS 97 (464)
T ss_pred EEEEECCCCchHHHHHHHHHHHCCCCE--EEEECCcCCCCCCccEEEEE-EEEcCHHHHHHHHHHHHH
Confidence 455556899999999999999999999 78864444334444245888 444554223445555554
No 187
>PRK07431 aspartate kinase; Provisional
Probab=89.26 E-value=5.5 Score=39.62 Aligned_cols=110 Identities=21% Similarity=0.180 Sum_probs=64.3
Q ss_pred CeEEEEEE-ecCCccHHHHHHHHHHHCCceEEEEEEEEee-CCC--eEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcC
Q 024865 93 GHTLVQIV-CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQ-RGN--CEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 168 (261)
Q Consensus 93 ~~t~l~V~-~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t-~g~--~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~ 168 (261)
+...|+|. .++.+|+++++...|.++|++|.. |.++. .++ ..-=.|.+.. . +-..+.++.+.|...+..
T Consensus 438 ~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~--i~~~~~~~~~~~~~isf~v~~-~----~~~~~~~~l~~l~~~~~~ 510 (587)
T PRK07431 438 NQAQLAIRNVPDRPGMAASIFGALAEANISVDM--IVQSQRCRSDGTRDISFTVPK-E----DREAAQKVLRELAKQLPG 510 (587)
T ss_pred CEEEEEECCCCCCccHHHHHHHHHHHcCCeEEE--EEecCCCCCCCceeEEEEEcH-H----HHHHHHHHHHHHHHhcCC
Confidence 45556554 478899999999999999999983 44211 111 1222344431 1 111223333333322211
Q ss_pred CceeeeecCCCCcceeeeeeeEEEeC---CcccHHHHHHHHHHhCCceEEEEE
Q 024865 169 PLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAE 218 (261)
Q Consensus 169 ~~~~~~~~~~~~~~v~~~t~iev~~~---DRpGLL~dI~~~l~~~~l~I~~Ak 218 (261)
..+.... .+ ..+.|.+. .+||+++++.++|.+.|++++..-
T Consensus 511 -~~i~~~~-----~v---a~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~ 554 (587)
T PRK07431 511 -AEVEDGP-----AI---AKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA 554 (587)
T ss_pred -ceEEEeC-----Ce---EEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence 1111100 11 26788875 899999999999999999995544
No 188
>PRK09034 aspartate kinase; Reviewed
Probab=89.20 E-value=7.8 Score=37.38 Aligned_cols=109 Identities=20% Similarity=0.232 Sum_probs=64.4
Q ss_pred CeEEEEEE---ecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCC
Q 024865 93 GHTLVQIV---CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP 169 (261)
Q Consensus 93 ~~t~l~V~---~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~ 169 (261)
+.+.|+|. ..++||.+++|..+|.++|++|.. |. .++ .-=+|.|.. .. +. ...+..+.+.|...+..
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~--i~---ss~-~sis~~v~~-~~-~~-~a~~~~l~~el~~~~~~- 376 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEH--MP---SGI-DDLSIIIRE-RQ-LT-PKKEDEILAEIKQELNP- 376 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEE--Ec---CCC-cEEEEEEeH-HH-hh-HHHHHHHHHHHHHhhCC-
Confidence 45666666 367899999999999999999985 32 221 112466641 11 10 11113343444333311
Q ss_pred ceeeeecCCCCcceeeeeeeEEEe---CCcccHHHHHHHHHHhCCceEEEEEE
Q 024865 170 LRVTVVSRGPDTELLVANPVELSG---KGRPLVFHDITLALKMLDICIFSAEI 219 (261)
Q Consensus 170 ~~~~~~~~~~~~~v~~~t~iev~~---~DRpGLL~dI~~~l~~~~l~I~~AkI 219 (261)
..+... ..+ ..|.|.+ .++||++++|..+|.+.|++|..-.-
T Consensus 377 ~~I~~~-----~~v---a~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq 421 (454)
T PRK09034 377 DELEIE-----HDL---AIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQ 421 (454)
T ss_pred ceEEEe-----CCE---EEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 111110 011 2566755 37999999999999999999965543
No 189
>PRK09181 aspartate kinase; Validated
Probab=88.94 E-value=7.2 Score=37.95 Aligned_cols=104 Identities=14% Similarity=0.113 Sum_probs=65.6
Q ss_pred CeEEEEEEec---CCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCC
Q 024865 93 GHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP 169 (261)
Q Consensus 93 ~~t~l~V~~~---DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~ 169 (261)
+.+.|.|... +.+|+.++|..+|.++|++|. -+.++ . .-=+|.|..+ ....+++.+.|.+.+...
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss-~---~sis~~v~~~------~~~~~~~~~~L~~~~~~~ 395 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATN-A---NTITHYLWGS------LKTLKRVIAELEKRYPNA 395 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEec-C---cEEEEEEcCC------hHHHHHHHHHHHHhcCCc
Confidence 5677777543 789999999999999999998 34422 1 1123444321 123455555565544321
Q ss_pred ceeeeecCCCCcceeeeeeeEEEeCC--cccHHHHHHHHHHhCCceEEEEE
Q 024865 170 LRVTVVSRGPDTELLVANPVELSGKG--RPLVFHDITLALKMLDICIFSAE 218 (261)
Q Consensus 170 ~~~~~~~~~~~~~v~~~t~iev~~~D--RpGLL~dI~~~l~~~~l~I~~Ak 218 (261)
.+.. . .+ .+|.|.+.. +||+.+++..+|.+.||||..--
T Consensus 396 -~i~~-~-----~~---a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~ 436 (475)
T PRK09181 396 -EVTV-R-----KV---AIVSAIGSNIAVPGVLAKAVQALAEAGINVLALH 436 (475)
T ss_pred -eEEE-C-----Cc---eEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEE
Confidence 1111 0 11 256666643 89999999999999999995433
No 190
>PRK06545 prephenate dehydrogenase; Validated
Probab=88.79 E-value=1.7 Score=40.52 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=35.4
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEE
Q 024865 92 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR 129 (261)
Q Consensus 92 ~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t 129 (261)
+.++.|.|.-+|+||-+++++..|...|+||.+-+|.-
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~ 325 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILE 325 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeee
Confidence 46789999999999999999999999999999999974
No 191
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=88.69 E-value=8.8 Score=39.92 Aligned_cols=110 Identities=16% Similarity=0.111 Sum_probs=65.9
Q ss_pred CCeEEEEEEec---CCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcC
Q 024865 92 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 168 (261)
Q Consensus 92 ~~~t~l~V~~~---DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~ 168 (261)
.+.+.|.|.+. ++||.++++..+|.++|++|....-. ..+. -=+|.|.. ...+...+.|.+.+..
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqs---sSe~-sIsf~V~~--------~d~~~av~~L~~~f~~ 380 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQS---SSEY-SISFCVPQ--------SDAAKAKRALEEEFAL 380 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcC---CCCc-eEEEEEeH--------HHHHHHHHHHHHHHHH
Confidence 45778888754 78999999999999999999743221 1211 11355541 1222233334333311
Q ss_pred CceeeeecCCCCcceeee---eeeEEEeC---CcccHHHHHHHHHHhCCceEEEEE
Q 024865 169 PLRVTVVSRGPDTELLVA---NPVELSGK---GRPLVFHDITLALKMLDICIFSAE 218 (261)
Q Consensus 169 ~~~~~~~~~~~~~~v~~~---t~iev~~~---DRpGLL~dI~~~l~~~~l~I~~Ak 218 (261)
+.. .. ....+.+. ..|.|.+. ++||++.++..+|.+.|++|+.-.
T Consensus 381 el~----~~-~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is 431 (819)
T PRK09436 381 ELK----EG-LLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA 431 (819)
T ss_pred Hhc----cC-CcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 110 00 00112221 26777775 789999999999999999996543
No 192
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.36 E-value=4.8 Score=29.30 Aligned_cols=61 Identities=10% Similarity=0.080 Sum_probs=35.8
Q ss_pred EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHH
Q 024865 96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWM 164 (261)
Q Consensus 96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~ 164 (261)
.+.|.-+|+||=|++++.+|. +.||....-.. ...+.+.-.+.+. ++| ++..+.+.+.|.+
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~-~~~~~~~v~i~ie~~~~-----~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRY-ADEKDAHIFVGVSVANG-----AEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEc-cCCCeeEEEEEEEeCCc-----HHHHHHHHHHHHH
Confidence 467888999999999999999 55555322221 1112333334343 221 3455666666654
No 193
>PRK09084 aspartate kinase III; Validated
Probab=87.90 E-value=12 Score=36.02 Aligned_cols=106 Identities=21% Similarity=0.213 Sum_probs=61.3
Q ss_pred CCeEEEEEEec---CCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcC
Q 024865 92 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 168 (261)
Q Consensus 92 ~~~t~l~V~~~---DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~ 168 (261)
.+.+.|+|.+. +.+|.++++..+|.++|++|.. |.++ . .-=+|.|.. ... . ......+.+++.+.+..
T Consensus 304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~--I~ss-e---~sIs~~i~~-~~~-~-~~~~~~~~~~l~~el~~ 374 (448)
T PRK09084 304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDL--ITTS-E---VSVSLTLDT-TGS-T-STGDTLLTQALLTELSQ 374 (448)
T ss_pred CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEE--Eecc-C---cEEEEEEec-hhh-h-hhhhHHHHHHHHHHHhc
Confidence 35677888654 6899999999999999999983 4422 1 112355542 111 0 01112233334433432
Q ss_pred CceeeeecCCCCcceeeeeeeEEEeC---CcccHHHHHHHHHHhCCceE
Q 024865 169 PLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICI 214 (261)
Q Consensus 169 ~~~~~~~~~~~~~~v~~~t~iev~~~---DRpGLL~dI~~~l~~~~l~I 214 (261)
...+... ..+ ..|.|.+. ++||+++++..+|.+.++.+
T Consensus 375 ~~~i~~~-----~~v---a~IsvvG~gm~~~~gv~arif~aL~~~nI~~ 415 (448)
T PRK09084 375 LCRVEVE-----EGL---ALVALIGNNLSKACGVAKRVFGVLEPFNIRM 415 (448)
T ss_pred CCeEEEE-----CCe---EEEEEECCCcccCcChHHHHHHHHHhCCeEE
Confidence 1111110 011 26777775 79999999999998754443
No 194
>PRK08818 prephenate dehydrogenase; Provisional
Probab=87.88 E-value=1.4 Score=41.37 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=36.9
Q ss_pred CeEEEEEEec-CCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865 93 GHTLVQIVCQ-DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 143 (261)
Q Consensus 93 ~~t~l~V~~~-DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~ 143 (261)
..+.+.+.-+ |+||-|+++..+|..+|+||.+=.+.....+++. |+|+
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~---f~i~ 342 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH---FRIG 342 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE---EEEE
Confidence 4677777886 9999999999999999999996666422234333 8887
No 195
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.81 E-value=5.5 Score=28.44 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=21.7
Q ss_pred ecCCccHHHHHHHHHHHCCceEE
Q 024865 101 CQDHKGLLYDIMRTLKDYNIQVS 123 (261)
Q Consensus 101 ~~DrpGLla~I~~vl~~~~l~I~ 123 (261)
.++.||++++|..+|+++|+||-
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VD 33 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVD 33 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEE
Confidence 47889999999999999999998
No 196
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=87.69 E-value=2.5 Score=35.10 Aligned_cols=67 Identities=7% Similarity=0.114 Sum_probs=47.2
Q ss_pred EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhc
Q 024865 95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL 167 (261)
Q Consensus 95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~ 167 (261)
-.+.+.-.|.||.|+++++.|++.|+||.+=-+..+.+.+..--++.+. | ++...+++.+.|.+..+
T Consensus 5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~--g----~~~~~EQi~kQL~kLid 71 (163)
T COG0440 5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS--G----DEQVLEQIIKQLNKLID 71 (163)
T ss_pred EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc--C----CcchHHHHHHHHHhhcc
Confidence 4677888999999999999999999999977666543443333333332 2 23456777777777664
No 197
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=87.12 E-value=5.5 Score=37.25 Aligned_cols=65 Identities=9% Similarity=0.158 Sum_probs=42.6
Q ss_pred EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEE---EeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865 95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS---RRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 164 (261)
Q Consensus 95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~---t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~ 164 (261)
..+.|..+|+||-|++++..+.++|.||.+-.-. ....-+.+.=.+.|... +++..+.|.+.|.+
T Consensus 306 ~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-----~~~~~~~i~~~L~~ 373 (380)
T TIGR01127 306 VRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-----GKEHLDEILKILRD 373 (380)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 3889999999999999999999999999854322 11111244444444411 23455666666654
No 198
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=86.94 E-value=21 Score=34.19 Aligned_cols=104 Identities=21% Similarity=0.175 Sum_probs=59.8
Q ss_pred CeEEEEEEecC-C-ccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCCc
Q 024865 93 GHTLVQIVCQD-H-KGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPL 170 (261)
Q Consensus 93 ~~t~l~V~~~D-r-pGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~~ 170 (261)
+...|.|...+ . +|.++++..+|.++|++|..- .+.+ .+.- =.|.|.. ...+...+.|........
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i--~q~~-se~s-Is~~I~~--------~~~~~a~~~L~~~~~~~~ 368 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLI--TQSS-SETS-ISFTVDK--------EDADQAKTLLKSELNLSA 368 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEE--EecC-CCce-EEEEEEH--------HHHHHHHHHHHHHHHhcC
Confidence 45566666533 2 799999999999999999843 2211 2111 1344431 111222222322111100
Q ss_pred eeeeecCCCCcceeee---eeeEEEe---CCcccHHHHHHHHHHhCCceEEEE
Q 024865 171 RVTVVSRGPDTELLVA---NPVELSG---KGRPLVFHDITLALKMLDICIFSA 217 (261)
Q Consensus 171 ~~~~~~~~~~~~v~~~---t~iev~~---~DRpGLL~dI~~~l~~~~l~I~~A 217 (261)
...|.+. ..+.|.+ .++||++++|..+|++.|++|..-
T Consensus 369 ---------~~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i 412 (441)
T TIGR00657 369 ---------LSSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMI 412 (441)
T ss_pred ---------cceEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEE
Confidence 0011111 2577755 378999999999999999999544
No 199
>PRK08198 threonine dehydratase; Provisional
Probab=86.82 E-value=6.9 Score=36.95 Aligned_cols=37 Identities=11% Similarity=0.113 Sum_probs=32.1
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEE
Q 024865 92 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS 128 (261)
Q Consensus 92 ~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~ 128 (261)
.....+.|.-+|+||-|+++..++.++|.||.+-...
T Consensus 325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 3456899999999999999999999999999976543
No 200
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=86.43 E-value=4.2 Score=38.49 Aligned_cols=53 Identities=13% Similarity=0.287 Sum_probs=41.3
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCe-EEEEEEEecCCC
Q 024865 93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGK 147 (261)
Q Consensus 93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~-v~D~F~V~~~g~ 147 (261)
..|.+.+..+|+||.|+++-++|+..|+|+. +|.+...++. -.=.|||+-.|.
T Consensus 296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLt--kIeSRP~~~~~~~Y~Ffid~eg~ 349 (386)
T PRK10622 296 AKTTLLMATGQQAGALVEALLVLRNHNLIMT--KLESRPIHGNPWEEMFYLDVQAN 349 (386)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCee--EEEeeecCCCCceEEEEEEEeCC
Confidence 3677777889999999999999999999998 7877654322 344588885554
No 201
>PRK07431 aspartate kinase; Provisional
Probab=86.13 E-value=8.4 Score=38.31 Aligned_cols=98 Identities=19% Similarity=0.243 Sum_probs=59.2
Q ss_pred ecCCccHHHHHHHHHHHCCceEEEEEEEEee-CCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCCceeeeecCCC
Q 024865 101 CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQ-RGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGP 179 (261)
Q Consensus 101 ~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t-~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~~~~~~~~~~~ 179 (261)
..+.+|++++|...|.++|+||.. |.++. .++..-=.|.|.. .......+.|.+ +.....
T Consensus 278 ~~~~~g~~a~if~~l~~~~I~v~~--i~qs~~~~~~~~isf~i~~--------~d~~~~~~~l~~-l~~~~~-------- 338 (587)
T PRK07431 278 VPDRPGIAAQLFEELAAQGVNVDL--IIQSIHEGNSNDIAFTVAE--------NELKKAEAVAEA-IAPALG-------- 338 (587)
T ss_pred CCCcccHHHHHHHHHHHcCCcEEE--EEeccCCCCCccEEEEEeH--------HHHHHHHHHHHH-HHHHcC--------
Confidence 478999999999999999999984 33211 2212222466641 112222222222 211110
Q ss_pred Ccceeee---eeeEEEeC---CcccHHHHHHHHHHhCCceEEEE
Q 024865 180 DTELLVA---NPVELSGK---GRPLVFHDITLALKMLDICIFSA 217 (261)
Q Consensus 180 ~~~v~~~---t~iev~~~---DRpGLL~dI~~~l~~~~l~I~~A 217 (261)
..++.+. ..|.|.+. ++||+++++..+|++.|++|..-
T Consensus 339 ~~~i~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i 382 (587)
T PRK07431 339 GAEVLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMI 382 (587)
T ss_pred CCcEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEE
Confidence 0012221 26777775 89999999999999999999643
No 202
>PRK08818 prephenate dehydrogenase; Provisional
Probab=85.39 E-value=1.9 Score=40.51 Aligned_cols=45 Identities=9% Similarity=0.058 Sum_probs=31.7
Q ss_pred eeEEEeC-CcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEe
Q 024865 188 PVELSGK-GRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLD 237 (261)
Q Consensus 188 ~iev~~~-DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~ 237 (261)
.+-+.-. |+||-|++|+..|+++||||.+=.|. -.+-+. |.|||.
T Consensus 297 ~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~----~~r~~~-y~f~i~ 342 (370)
T PRK08818 297 TLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSS----RTPAGE-LHFRIG 342 (370)
T ss_pred EEEEECCCCCCChHHHHHHHHHHcCcccceEEEe----cccCce-EEEEEE
Confidence 4445554 99999999999999999999555542 112223 458884
No 203
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=84.66 E-value=7.6 Score=27.42 Aligned_cols=56 Identities=14% Similarity=0.165 Sum_probs=34.0
Q ss_pred cCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865 102 QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 164 (261)
Q Consensus 102 ~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~ 164 (261)
.+.||+++++..+|.++|+++.. +. +.+ .-=+|.|. ......+......|.+.|.+
T Consensus 12 ~~~~g~~~~if~~L~~~~I~v~~--i~--~s~--~~is~~v~-~~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 12 LGAHGFLAKVFEIFAKHGLSVDL--IS--TSE--VSVSLTLD-PTKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred CCCccHHHHHHHHHHHcCCeEEE--EE--cCC--cEEEEEEE-chhhccchHHHHHHHHHHHh
Confidence 67899999999999999999963 33 222 11124443 23222222355566666655
No 204
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=84.09 E-value=4.7 Score=38.98 Aligned_cols=55 Identities=9% Similarity=0.090 Sum_probs=41.5
Q ss_pred CCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEE--EEEEecCCC
Q 024865 91 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEID--LFIMQADGK 147 (261)
Q Consensus 91 ~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D--~F~V~~~g~ 147 (261)
..+.|.|.+..+|+||-|+++-.+|..+|+|+. +|.+......-.+ .|+|+-+|.
T Consensus 28 ~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLT--hIESRPsk~~~~e~Y~FfVD~Eg~ 84 (464)
T TIGR01270 28 GVQRLSIIFSLSNVVGDLSKAIAIFQDRHINIL--HLESRDSKDGTSKTMDVLVDVELF 84 (464)
T ss_pred CCceEEEEEECCCCchHHHHHHHHHHHCCCCEE--EEECCcCCCCCCccEEEEEEEEcC
Confidence 445677888889999999999999999999999 7876655433333 577873343
No 205
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=83.99 E-value=28 Score=33.63 Aligned_cols=107 Identities=21% Similarity=0.215 Sum_probs=63.1
Q ss_pred CCeEEEEEEec---CCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcC
Q 024865 92 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 168 (261)
Q Consensus 92 ~~~t~l~V~~~---DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~ 168 (261)
.+.+.+.|... ..+|.+++|..+|.++|+||.. |.+. .++.- =+|.|.. .......+.|.+....
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~--I~q~-~~~~~-i~~~v~~--------~~~~~a~~~l~~~~~~ 372 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDL--ITQS-ISEVS-ISFTVPE--------SDAPRALRALLEEKLE 372 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEE--EEec-cCCCe-EEEEEch--------hhHHHHHHHHHHHHhh
Confidence 45667777653 3459999999999999999973 4321 11111 3465541 1112223333333322
Q ss_pred Cc-eeeeecCCCCcceeeeeeeEEEe---CCcccHHHHHHHHHHhCCceEEEEE
Q 024865 169 PL-RVTVVSRGPDTELLVANPVELSG---KGRPLVFHDITLALKMLDICIFSAE 218 (261)
Q Consensus 169 ~~-~~~~~~~~~~~~v~~~t~iev~~---~DRpGLL~dI~~~l~~~~l~I~~Ak 218 (261)
.. .+.... .+ ..|.+.+ ...||..+.+.++|++.|+||....
T Consensus 373 ~~~~v~~~~-----~~---a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is 418 (447)
T COG0527 373 LLAEVEVEE-----GL---ALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS 418 (447)
T ss_pred hcceEEeeC-----Ce---eEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence 21 111100 11 1466665 4789999999999999999996555
No 206
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.57 E-value=8 Score=27.56 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=35.2
Q ss_pred cCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCC-CCChhhHHHHHHHHHH
Q 024865 102 QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKK-IVDPSKQNGLSSRLWM 164 (261)
Q Consensus 102 ~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~-l~~~~~~~~l~~~L~~ 164 (261)
++.||+++++.++|+++|+||- -|. + ++ .-=+|.|. .... +.+ +..++|.+.|.+
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vD--mI~--~-s~-~~isftv~-~~~~~~~~-~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVD--LVS--T-SE-TNVTVSLD-PDPNGLDP-DVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEE--EEE--e-CC-CEEEEEEe-Ccccccch-HHHHHHHHHHHh
Confidence 6789999999999999999998 354 2 32 11234443 2221 222 356677777665
No 207
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=83.48 E-value=3.4 Score=34.56 Aligned_cols=40 Identities=18% Similarity=0.128 Sum_probs=32.6
Q ss_pred eEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeecccee
Q 024865 189 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDRE 228 (261)
Q Consensus 189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~ 228 (261)
+.+.+.++||.|.+++-.+++.|.||..|.---...|+.+
T Consensus 5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~ 44 (218)
T COG1707 5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKA 44 (218)
T ss_pred eEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceE
Confidence 6788999999999999999999999988876422345553
No 208
>PRK08198 threonine dehydratase; Provisional
Probab=82.88 E-value=5.2 Score=37.78 Aligned_cols=33 Identities=9% Similarity=0.125 Sum_probs=28.8
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
.+.|.-.||||-|.++...+.++|.||..-...
T Consensus 329 ~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 329 KLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred EEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 688889999999999999999999999655443
No 209
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=82.45 E-value=2.9 Score=34.67 Aligned_cols=45 Identities=11% Similarity=0.174 Sum_probs=33.3
Q ss_pred CeEEEEEEe--cCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEE
Q 024865 93 GHTLVQIVC--QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF 140 (261)
Q Consensus 93 ~~t~l~V~~--~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F 140 (261)
|+-+++|+. .+.||.++.+++.++++|++|. +++. .+=+...+.+
T Consensus 92 G~gViei~~~~~~~pgi~A~V~~~iak~gi~Ir--qi~~-~dpe~~~e~~ 138 (167)
T COG2150 92 GLGVIEIYPEDARYPGILAGVASLIAKRGISIR--QIIS-EDPELQEEPK 138 (167)
T ss_pred CCeEEEEEeccCCCccHHHHHHHHHHHcCceEE--EEec-CCcccCCCce
Confidence 556777776 6679999999999999999999 4552 2333455554
No 210
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=82.42 E-value=2.3 Score=35.18 Aligned_cols=32 Identities=13% Similarity=0.082 Sum_probs=27.6
Q ss_pred eeEEEe--CCcccHHHHHHHHHHhCCceEEEEEE
Q 024865 188 PVELSG--KGRPLVFHDITLALKMLDICIFSAEI 219 (261)
Q Consensus 188 ~iev~~--~DRpGLL~dI~~~l~~~~l~I~~AkI 219 (261)
++||.+ .+.||.|+.|+..++++|++|..+--
T Consensus 95 Viei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~ 128 (167)
T COG2150 95 VIEIYPEDARYPGILAGVASLIAKRGISIRQIIS 128 (167)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence 677776 56799999999999999999977654
No 211
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=81.89 E-value=17 Score=38.05 Aligned_cols=103 Identities=18% Similarity=0.215 Sum_probs=60.6
Q ss_pred CeEEEEEEe---cCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCC
Q 024865 93 GHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP 169 (261)
Q Consensus 93 ~~t~l~V~~---~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~ 169 (261)
+.+.|+|.+ .+.+|.+++|..+|.++|++|. -|.+ .. .-=+|.+.. .......+.++.+.+.|. ..
T Consensus 321 ~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd--~I~s--se--~sis~~i~~-~~~~~~~~~~~~l~~~l~----~~ 389 (861)
T PRK08961 321 GIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVD--LISS--SE--TNVTVSLDP-SENLVNTDVLAALSADLS----QI 389 (861)
T ss_pred CEEEEEEecCCccccccHHHHHHHHHHHcCCeEE--EEEc--CC--CEEEEEEcc-ccccchHHHHHHHHHHHh----hc
Confidence 567788853 4689999999999999999997 3442 22 111244432 111101122333333332 11
Q ss_pred ceeeeecCCCCcceeeeeeeEEEeC---CcccHHHHHHHHHHhCCceE
Q 024865 170 LRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICI 214 (261)
Q Consensus 170 ~~~~~~~~~~~~~v~~~t~iev~~~---DRpGLL~dI~~~l~~~~l~I 214 (261)
..+... ..+ ..|.|.+. .+||+++++..+|.+.|+++
T Consensus 390 ~~i~~~-----~~v---a~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 390 CRVKII-----VPC---AAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred CcEEEe-----CCe---EEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 111111 011 26777775 89999999999999987666
No 212
>PRK06349 homoserine dehydrogenase; Provisional
Probab=81.55 E-value=8.1 Score=36.93 Aligned_cols=49 Identities=14% Similarity=0.240 Sum_probs=36.4
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865 93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 143 (261)
Q Consensus 93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~ 143 (261)
...-|.+...|+||.|++|+++|.++++||.+-.-.. +.+ ....+++++
T Consensus 347 ~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~-~~~-~~~~ivivT 395 (426)
T PRK06349 347 SKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKG-AGG-EGAEIVIVT 395 (426)
T ss_pred eeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEecc-CCC-CceeEEEEE
Confidence 4568888899999999999999999999998543331 223 344555665
No 213
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=80.73 E-value=3 Score=39.69 Aligned_cols=58 Identities=14% Similarity=0.092 Sum_probs=39.8
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccchHHHHHHHH
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVW 254 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~~~~~~~~l~ 254 (261)
.|-+.-.|+||.++.|+..|+++|+||..-+.. ..|+.+ +++-+.|+ ++. +.+.+.|+
T Consensus 340 rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~--~~~~~A-----~~iie~D~-~~~-~~~~~~i~ 397 (409)
T PRK11790 340 RLLHIHENRPGVLAAINQIFAEQGINIAAQYLQ--TDGEIG-----YVVIDVDA-DYA-EEALDALK 397 (409)
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCCCHHHheec--cCCCEE-----EEEEEeCC-CCc-HHHHHHHH
Confidence 566788999999999999999999999666654 334332 44546555 333 23555544
No 214
>PLN02317 arogenate dehydratase
Probab=79.84 E-value=12 Score=35.42 Aligned_cols=38 Identities=13% Similarity=0.331 Sum_probs=32.7
Q ss_pred eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCC
Q 024865 94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG 133 (261)
Q Consensus 94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g 133 (261)
.|.|.+..+|+||-|+++-.+|+.+|+|+. +|.+....
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLt--kIESRP~~ 320 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLT--KIESRPQR 320 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEE--EEEeeecC
Confidence 477777779999999999999999999998 78766643
No 215
>PRK11898 prephenate dehydratase; Provisional
Probab=79.69 E-value=15 Score=33.17 Aligned_cols=53 Identities=17% Similarity=0.327 Sum_probs=38.2
Q ss_pred CeEEEEEEecC-CccHHHHHHHHHHHCCceEEEEEEEEeeCCC-eEEEEEEEecCCC
Q 024865 93 GHTLVQIVCQD-HKGLLYDIMRTLKDYNIQVSYGRFSRRQRGN-CEIDLFIMQADGK 147 (261)
Q Consensus 93 ~~t~l~V~~~D-rpGLla~I~~vl~~~~l~I~~AkI~t~t~g~-~v~D~F~V~~~g~ 147 (261)
..|.|.+..++ +||-|+++-.+|+.+|+|+. +|.+....+ .-.=.|+|+-+|.
T Consensus 195 ~ktslif~l~~~~pGsL~~~L~~F~~~~INLt--~IeSRP~~~~~~~y~F~vd~eg~ 249 (283)
T PRK11898 195 DKTSLVLTLPNNLPGALYKALSEFAWRGINLT--RIESRPTKTGLGTYFFFIDVEGH 249 (283)
T ss_pred CeEEEEEEeCCCCccHHHHHHHHHHHCCCCee--eEecccCCCCCccEEEEEEEEcc
Confidence 35666666655 69999999999999999999 787665432 2233578874454
No 216
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=79.31 E-value=21 Score=39.75 Aligned_cols=89 Identities=18% Similarity=0.180 Sum_probs=66.1
Q ss_pred ceEEEEE--cCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeC--C-CeEEEEEEEe-cCCCCCCChhh
Q 024865 81 NVSVTID--NSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR--G-NCEIDLFIMQ-ADGKKIVDPSK 154 (261)
Q Consensus 81 ~~~V~i~--~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~--g-~~v~D~F~V~-~~g~~l~~~~~ 154 (261)
+..+.+. ....++...+.||.+.+|..|+++.-+|..+|+.|.+.+-+.-.. | ...+.-|.+. +.+..+...+.
T Consensus 474 ~~~~~l~~~~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~ 553 (1528)
T PF05088_consen 474 PLAVDLYRPAGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDI 553 (1528)
T ss_pred CceEEEeccCCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHH
Confidence 4455554 223346789999999999999999999999999999987654333 2 2457778887 66665555567
Q ss_pred HHHHHHHHHHhhcCC
Q 024865 155 QNGLSSRLWMELLQP 169 (261)
Q Consensus 155 ~~~l~~~L~~~L~~~ 169 (261)
++.+++++.++..+.
T Consensus 554 ~~~~~~a~~~v~~g~ 568 (1528)
T PF05088_consen 554 RERFEEAFEAVWNGR 568 (1528)
T ss_pred HHHHHHHHHHHhcCC
Confidence 788888888877654
No 217
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=77.15 E-value=16 Score=35.10 Aligned_cols=66 Identities=15% Similarity=0.252 Sum_probs=45.1
Q ss_pred eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCC-CeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865 94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 164 (261)
Q Consensus 94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g-~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~ 164 (261)
.|.|.+..+|+||-|+++-.+|..+|+|+. +|.+.... ..-.=.|+|+-+|.. + ...+.+.+.|.+
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLt--hIESRPsk~~~~eY~FFVD~eg~~--~-~~v~~aL~~Lk~ 82 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLT--HIESRPSKTHPGEYEFFVEFDEAS--D-RKLEGVIEHLRQ 82 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCee--EEecccCCCCCccEEEEEEEecCc--c-HHHHHHHHHHHH
Confidence 577888889999999999999999999999 78765432 112225888744543 1 334444444444
No 218
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=76.28 E-value=5.3 Score=25.48 Aligned_cols=29 Identities=31% Similarity=0.253 Sum_probs=23.6
Q ss_pred eEEEeCC---cccHHHHHHHHHHhCCceEEEE
Q 024865 189 VELSGKG---RPLVFHDITLALKMLDICIFSA 217 (261)
Q Consensus 189 iev~~~D---RpGLL~dI~~~l~~~~l~I~~A 217 (261)
++|.+.+ .||.++++.++|.+.++++..-
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i 34 (60)
T cd04868 3 VSIVGVGMRGTPGVAAKIFSALAEAGINVDMI 34 (60)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCcEEEE
Confidence 4555544 8999999999999999999544
No 219
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=75.80 E-value=5.5 Score=26.72 Aligned_cols=31 Identities=26% Similarity=0.249 Sum_probs=25.5
Q ss_pred eeEEEe---CCcccHHHHHHHHHHhCCceEEEEE
Q 024865 188 PVELSG---KGRPLVFHDITLALKMLDICIFSAE 218 (261)
Q Consensus 188 ~iev~~---~DRpGLL~dI~~~l~~~~l~I~~Ak 218 (261)
.|.+.+ .+.||++++|.++|.+.|+++..--
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~ 36 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIA 36 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 456666 4889999999999999999995543
No 220
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=75.29 E-value=67 Score=33.52 Aligned_cols=102 Identities=16% Similarity=0.096 Sum_probs=61.5
Q ss_pred CeEEEEEEec---CCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCC
Q 024865 93 GHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP 169 (261)
Q Consensus 93 ~~t~l~V~~~---DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~ 169 (261)
+.+.+.|... +.||.++++..+|.++|++|.. |.++... . -=.|.++. ...+.+.+.|.+. ...
T Consensus 316 ~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~--i~~~~s~-~-sis~~i~~--------~~~~~~~~~l~~~-~~~ 382 (810)
T PRK09466 316 DVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLA--VGVHPDR-Q-LLQLAYTS--------EVADSALKLLDDA-ALP 382 (810)
T ss_pred CEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEE--EEecCCC-c-EEEEEEeH--------HHHHHHHHHHHhh-cCC
Confidence 5667777665 7889999999999999999973 4322222 2 11233321 1223333333332 111
Q ss_pred ceeeeecCCCCcceeeeeeeEEEeC---CcccHHHHHHHHHHhCCceEE
Q 024865 170 LRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIF 215 (261)
Q Consensus 170 ~~~~~~~~~~~~~v~~~t~iev~~~---DRpGLL~dI~~~l~~~~l~I~ 215 (261)
..+... ..+ ..|.|.+. .+||+..++..+|.+.|+++.
T Consensus 383 ~~i~v~-----~~~---a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii 423 (810)
T PRK09466 383 GELKLR-----EGL---ALVALVGAGVTRNPLHCHRFYQQLKDQPVEFI 423 (810)
T ss_pred CcEEEe-----CCe---EEEEEeCCCcccCccHHHHHHHHHHhCCCcEE
Confidence 111110 011 26777774 689999999999999999983
No 221
>PRK06545 prephenate dehydrogenase; Validated
Probab=75.02 E-value=5.2 Score=37.21 Aligned_cols=33 Identities=21% Similarity=0.098 Sum_probs=30.0
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
.+-|.-.||||-|+.|+..|.+.||||.+-+|.
T Consensus 292 ~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~ 324 (359)
T PRK06545 292 DLYVDVPDEPGVIARVTAILGEEGISIENLRIL 324 (359)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCCeecceee
Confidence 566777899999999999999999999998885
No 222
>PRK06382 threonine dehydratase; Provisional
Probab=74.70 E-value=3.6 Score=39.00 Aligned_cols=32 Identities=25% Similarity=0.147 Sum_probs=28.4
Q ss_pred eeeEEEeCCcccHHHHHHHHHHhCCceEEEEE
Q 024865 187 NPVELSGKGRPLVFHDITLALKMLDICIFSAE 218 (261)
Q Consensus 187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~Ak 218 (261)
..+.|.-.||||-|.+|++.|.++|+||.+-.
T Consensus 331 ~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~ 362 (406)
T PRK06382 331 VRIECNIPDRPGNLYRIANAIASNGGNIYHAE 362 (406)
T ss_pred EEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEE
Confidence 37889999999999999999999999996543
No 223
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=74.06 E-value=20 Score=22.92 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=23.0
Q ss_pred ecCCccHHHHHHHHHHHCCceEEEEE
Q 024865 101 CQDHKGLLYDIMRTLKDYNIQVSYGR 126 (261)
Q Consensus 101 ~~DrpGLla~I~~vl~~~~l~I~~Ak 126 (261)
.+|.||.++++..+|.++|++|....
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~ 33 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIV 33 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEE
Confidence 48899999999999999999997543
No 224
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=73.85 E-value=3.6 Score=36.66 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=30.9
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEE
Q 024865 93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRF 127 (261)
Q Consensus 93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI 127 (261)
....+.+...|-||.+.+|+++|++.|.||-+--+
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvV 110 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVV 110 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheee
Confidence 45688999999999999999999999999986544
No 225
>PRK08526 threonine dehydratase; Provisional
Probab=73.62 E-value=28 Score=33.02 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=45.2
Q ss_pred CCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCC---CeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865 91 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG---NCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 164 (261)
Q Consensus 91 ~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g---~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~ 164 (261)
......+.|.-+||||-|++++..+...+.||..-.-...... +.+.=.+.+.. .+++..++|.+.|.+
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~-----~~~~~~~~~~~~l~~ 394 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLET-----KGKEHQEEIRKILTE 394 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEe-----CCHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999985443221111 13322233331 235667777777654
No 226
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=73.18 E-value=3.8 Score=27.94 Aligned_cols=24 Identities=25% Similarity=0.102 Sum_probs=21.8
Q ss_pred CCcccHHHHHHHHHHhCCceEEEE
Q 024865 194 KGRPLVFHDITLALKMLDICIFSA 217 (261)
Q Consensus 194 ~DRpGLL~dI~~~l~~~~l~I~~A 217 (261)
.|+||.+++|.++|.+.|++|..-
T Consensus 10 ~~~~g~~~~i~~~L~~~~I~i~~i 33 (75)
T cd04913 10 PDKPGVAAKIFGALAEANINVDMI 33 (75)
T ss_pred CCCCcHHHHHHHHHHHcCCeEEEE
Confidence 689999999999999999999644
No 227
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.49 E-value=4.8 Score=26.06 Aligned_cols=27 Identities=22% Similarity=0.006 Sum_probs=23.2
Q ss_pred eCCcccHHHHHHHHHHhCCceEEEEEE
Q 024865 193 GKGRPLVFHDITLALKMLDICIFSAEI 219 (261)
Q Consensus 193 ~~DRpGLL~dI~~~l~~~~l~I~~AkI 219 (261)
..|.||.+++|...|.++|++|..-..
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~ 34 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQ 34 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEE
Confidence 378899999999999999999955443
No 228
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=72.38 E-value=7.2 Score=38.37 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=33.1
Q ss_pred eEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeecccee
Q 024865 189 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDRE 228 (261)
Q Consensus 189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~ 228 (261)
+=+.-.||||.+..|+..|.++++||..-+++++..|.++
T Consensus 454 li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~a 493 (525)
T TIGR01327 454 LIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEA 493 (525)
T ss_pred EEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeE
Confidence 3345589999999999999999999988888876666663
No 229
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=72.19 E-value=27 Score=23.57 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=25.3
Q ss_pred EEEEEe---cCCccHHHHHHHHHHHCCceEEEEEEE
Q 024865 96 LVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFS 128 (261)
Q Consensus 96 ~l~V~~---~DrpGLla~I~~vl~~~~l~I~~AkI~ 128 (261)
.|.|.+ .+.||+++++..+|.+.|++|. .+.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~--~~~ 36 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL--QTA 36 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE--EEE
Confidence 455555 4789999999999999999996 444
No 230
>PRK06349 homoserine dehydrogenase; Provisional
Probab=71.21 E-value=8.9 Score=36.66 Aligned_cols=33 Identities=21% Similarity=0.090 Sum_probs=28.6
Q ss_pred eeeeEEEeCCcccHHHHHHHHHHhCCceEEEEE
Q 024865 186 ANPVELSGKGRPLVFHDITLALKMLDICIFSAE 218 (261)
Q Consensus 186 ~t~iev~~~DRpGLL~dI~~~l~~~~l~I~~Ak 218 (261)
..-+.+...|+||.|++|+..|.+++++|.+-.
T Consensus 348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~ 380 (426)
T PRK06349 348 KYYLRLLVADKPGVLAKIAAIFAENGISIESIL 380 (426)
T ss_pred eEEEEEEecCCcchHHHHHHHHhhcCccEEEEE
Confidence 346888889999999999999999999996543
No 231
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=70.92 E-value=4.3 Score=39.90 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=31.9
Q ss_pred eEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccce
Q 024865 189 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDR 227 (261)
Q Consensus 189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger 227 (261)
+=+...|+||.+..|+..|.+.++||..-+++++..|.+
T Consensus 455 li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~ 493 (526)
T PRK13581 455 LIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGE 493 (526)
T ss_pred EEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCe
Confidence 444568999999999999999999998888876544444
No 232
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=70.89 E-value=8 Score=26.29 Aligned_cols=28 Identities=36% Similarity=0.381 Sum_probs=24.3
Q ss_pred eeEEEeC---CcccHHHHHHHHHHhCCceEE
Q 024865 188 PVELSGK---GRPLVFHDITLALKMLDICIF 215 (261)
Q Consensus 188 ~iev~~~---DRpGLL~dI~~~l~~~~l~I~ 215 (261)
.+.|.+. ++||+++++..+|.+.|+++.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 4566664 899999999999999999995
No 233
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.98 E-value=8.6 Score=25.85 Aligned_cols=33 Identities=21% Similarity=0.063 Sum_probs=26.3
Q ss_pred eeEEEeC---CcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 188 PVELSGK---GRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 188 ~iev~~~---DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
.|.+.+. ++||++++|.++|.+.|+++..--.+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~ 38 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQG 38 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEec
Confidence 4566664 78999999999999999999655433
No 234
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=69.49 E-value=5.9 Score=37.03 Aligned_cols=30 Identities=13% Similarity=0.072 Sum_probs=27.3
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEE
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSA 217 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~A 217 (261)
.+.|.-.||||-|+++++.++++|.||..-
T Consensus 307 ~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i 336 (380)
T TIGR01127 307 RIETVLPDRPGALYHLLESIAEARANIVKI 336 (380)
T ss_pred EEEEEeCCCCCHHHHHHHHHhcCCCcEEEE
Confidence 688899999999999999999999999544
No 235
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=69.20 E-value=9.7 Score=24.77 Aligned_cols=30 Identities=33% Similarity=0.285 Sum_probs=24.6
Q ss_pred eeEEEeC---CcccHHHHHHHHHHhCCceEEEE
Q 024865 188 PVELSGK---GRPLVFHDITLALKMLDICIFSA 217 (261)
Q Consensus 188 ~iev~~~---DRpGLL~dI~~~l~~~~l~I~~A 217 (261)
.|++.+. +++|++++|...|.+.++++..-
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i 34 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMI 34 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEE
Confidence 4666554 88999999999999999999443
No 236
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=68.86 E-value=31 Score=22.86 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=21.0
Q ss_pred cCCccHHHHHHHHHHHCCceEEE
Q 024865 102 QDHKGLLYDIMRTLKDYNIQVSY 124 (261)
Q Consensus 102 ~DrpGLla~I~~vl~~~~l~I~~ 124 (261)
.+++|+.+++..+|.++|+++..
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~ 33 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDL 33 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEE
Confidence 57799999999999999999983
No 237
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=68.69 E-value=10 Score=24.08 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=20.2
Q ss_pred CCccHHHHHHHHHHHCCceEEE
Q 024865 103 DHKGLLYDIMRTLKDYNIQVSY 124 (261)
Q Consensus 103 DrpGLla~I~~vl~~~~l~I~~ 124 (261)
+.+|.++++..+|.+++++|..
T Consensus 12 ~~~~~~~~i~~~l~~~~i~i~~ 33 (60)
T cd04868 12 GTPGVAAKIFSALAEAGINVDM 33 (60)
T ss_pred CCCCHHHHHHHHHHHCCCcEEE
Confidence 4899999999999999999974
No 238
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.47 E-value=4.9 Score=28.72 Aligned_cols=56 Identities=16% Similarity=0.076 Sum_probs=35.1
Q ss_pred eCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccchHHHHHHHHHHHc
Q 024865 193 GKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM 258 (261)
Q Consensus 193 ~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~~~~~~~~l~~~l~ 258 (261)
-.++||++++|..+|+++|++|- -|.+ ++ .++ .|.+...+..+ .+++...|.++|.
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VD--mI~~---s~--~~i-Sftv~~~d~~~--~~~~~~~l~~~l~ 66 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVD--LITT---SE--ISV-ALTLDNTGSTS--DQLLTQALLKELS 66 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEE--EEee---cC--CEE-EEEEeccccch--hHHHHHHHHHHHH
Confidence 36889999999999999999993 3331 23 243 68886543211 1223335555553
No 239
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=68.12 E-value=5.8 Score=26.95 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=22.1
Q ss_pred ecCCccHHHHHHHHHHHCCceEEE
Q 024865 101 CQDHKGLLYDIMRTLKDYNIQVSY 124 (261)
Q Consensus 101 ~~DrpGLla~I~~vl~~~~l~I~~ 124 (261)
.+|.||.++++..+|.+.|++|..
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~ 32 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDM 32 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEE
Confidence 378999999999999999999984
No 240
>PRK08841 aspartate kinase; Validated
Probab=67.63 E-value=65 Score=30.48 Aligned_cols=91 Identities=11% Similarity=0.082 Sum_probs=54.6
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCCcee
Q 024865 93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRV 172 (261)
Q Consensus 93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~~~~ 172 (261)
+.+.|.|.. +.++++.+.|.++|+++.. +. +.... =.|.|. ....+++ ...+.....
T Consensus 257 ~~~~i~v~~----~~~~~i~~~l~~~~i~v~~--i~--~~~~~--~~~~v~--------~~~~~~~----~~~~~~~i~- 313 (392)
T PRK08841 257 DLALIEVES----ESLPSLTKQCQMLGIEVWN--VI--EEADR--AQIVIK--------QDACAKL----KLVFDDKIR- 313 (392)
T ss_pred CeEEEEecc----chHHHHHHHHHHcCCCEEE--EE--ecCCc--EEEEEC--------HHHHHHH----HHhCcccEE-
Confidence 445556533 4578999999999999883 33 22211 134553 1122222 221211111
Q ss_pred eeecCCCCcceeeeeeeEEEeCCcccHHHHHHHHHHhCCceEE
Q 024865 173 TVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIF 215 (261)
Q Consensus 173 ~~~~~~~~~~v~~~t~iev~~~DRpGLL~dI~~~l~~~~l~I~ 215 (261)
.. ..+ ..+.+.+...||+.+++..+|.+.|++|.
T Consensus 314 -~~-----~~~---a~vsvVG~~~~gv~~~~~~aL~~~~I~i~ 347 (392)
T PRK08841 314 -NS-----ESV---SLLTLVGLEANGMVEHACNLLAQNGIDVR 347 (392)
T ss_pred -Ee-----CCE---EEEEEECCCChHHHHHHHHHHHhCCCCEE
Confidence 00 011 26888998999999999999999999994
No 241
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=67.06 E-value=41 Score=27.17 Aligned_cols=69 Identities=10% Similarity=0.084 Sum_probs=46.0
Q ss_pred CCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865 91 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 164 (261)
Q Consensus 91 ~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~ 164 (261)
...-..+.++-.||.|.|+++-.++++.++||+.-.=.. ...|+|--+..++..+- +...+.|.+.|++
T Consensus 69 k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~i-pl~g~Anvtlsi~~ssm----~~~V~~ii~kl~k 137 (150)
T COG4492 69 KERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTI-PLQGRANVTLSIDTSSM----EKDVDKIIEKLRK 137 (150)
T ss_pred cceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEeccc-ccCceeeEEEEEEchhh----hhhHHHHHHHHhc
Confidence 345567889999999999999999999999999433222 23447766666641121 2344555555544
No 242
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=66.66 E-value=6.9 Score=38.42 Aligned_cols=33 Identities=18% Similarity=0.114 Sum_probs=30.6
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
.++|.|.||.|+..+|...|...+|++..-.|.
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~ 34 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEID 34 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEc
Confidence 489999999999999999999999999887775
No 243
>PRK14634 hypothetical protein; Provisional
Probab=66.11 E-value=73 Score=26.13 Aligned_cols=62 Identities=13% Similarity=0.048 Sum_probs=44.5
Q ss_pred ccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcC
Q 024865 105 KGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 168 (261)
Q Consensus 105 pGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~ 168 (261)
+-+...+..++..+|+.+.+..+... .+.+++-+|.=.++|..++ -+.++.+.++|.+.|+.
T Consensus 7 ~~i~~l~~~~~~~~G~elvdve~~~~-~~~~~lrV~ID~~~g~~v~-lddC~~vSr~is~~LD~ 68 (155)
T PRK14634 7 PDLETLASATAADKGFELCGIQVLTH-LQPMTLQVQIRRSSGSDVS-LDDCAGFSGPMGEALEA 68 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeC-CCCcEEEEEEECCCCCccc-HHHHHHHHHHHHHHhcc
Confidence 45667778889999999999998832 3446776664226664443 46788899999988874
No 244
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.99 E-value=6.4 Score=27.18 Aligned_cols=29 Identities=14% Similarity=-0.015 Sum_probs=24.0
Q ss_pred EEEeCCcccHHHHHHHHHHhCCceEEEEEE
Q 024865 190 ELSGKGRPLVFHDITLALKMLDICIFSAEI 219 (261)
Q Consensus 190 ev~~~DRpGLL~dI~~~l~~~~l~I~~AkI 219 (261)
.|.-+||||=|.++..++.+ |.||..-.-
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~ 30 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHY 30 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEE
Confidence 46668999999999999999 999854444
No 245
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.77 E-value=12 Score=24.95 Aligned_cols=32 Identities=25% Similarity=0.208 Sum_probs=25.6
Q ss_pred eeEEEeC---CcccHHHHHHHHHHhCCceEEEEEE
Q 024865 188 PVELSGK---GRPLVFHDITLALKMLDICIFSAEI 219 (261)
Q Consensus 188 ~iev~~~---DRpGLL~dI~~~l~~~~l~I~~AkI 219 (261)
.+.+.+. ++||+++++.+.|++.|+++..--.
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q 37 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQ 37 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 4566664 7899999999999999999955443
No 246
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=62.10 E-value=16 Score=28.86 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=22.5
Q ss_pred EEeCCcccHHHHHHHHHHhCCceEEE
Q 024865 191 LSGKGRPLVFHDITLALKMLDICIFS 216 (261)
Q Consensus 191 v~~~DRpGLL~dI~~~l~~~~l~I~~ 216 (261)
...-|=+|+|+.|.+.|++.||.|+.
T Consensus 71 pf~FgltGilasV~~pLsd~gigIFa 96 (128)
T COG3603 71 PFDFGLTGILASVSQPLSDNGIGIFA 96 (128)
T ss_pred cccCCcchhhhhhhhhHhhCCccEEE
Confidence 34579999999999999999999953
No 247
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=61.66 E-value=44 Score=23.60 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=33.6
Q ss_pred cCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHH
Q 024865 102 QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWM 164 (261)
Q Consensus 102 ~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~ 164 (261)
.-.||+++++.++|+++|+||- -|. + ++ |.+-++ +... +.+ +..++|.+.|.+
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd--~I~--~-s~---~~isftv~~~~-~~~-~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVD--LIS--T-SE---VHVSMALHMEN-AED-TNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEE--EEE--e-CC---CEEEEEEehhh-cCh-HHHHHHHHHHHH
Confidence 3458999999999999999998 344 2 32 334333 3222 121 255667776665
No 248
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=61.24 E-value=17 Score=24.22 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=28.0
Q ss_pred CCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCC
Q 024865 194 KGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG 239 (261)
Q Consensus 194 ~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~ 239 (261)
.++||+.++|.++|.++|+++..- ++ ++ ..+ .|++...
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i--~t---~~--~~i-s~~v~~~ 48 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLI--PT---SE--NSV-TLYLDDS 48 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEE--ec---CC--CEE-EEEEehh
Confidence 478999999999999999999543 31 22 133 7888654
No 249
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.09 E-value=8.3 Score=27.48 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=28.4
Q ss_pred CCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCC
Q 024865 194 KGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGD 240 (261)
Q Consensus 194 ~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~ 240 (261)
.+.||++++|..+|+++|+++-. |. + ++ .+ ..|.+...+
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDm--I~--~-s~--~~-isftv~~~~ 50 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDL--VS--T-SE--TN-VTVSLDPDP 50 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEE--EE--e-CC--CE-EEEEEeCcc
Confidence 58899999999999999999933 33 1 33 23 368885554
No 250
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.49 E-value=18 Score=24.10 Aligned_cols=33 Identities=24% Similarity=0.116 Sum_probs=26.5
Q ss_pred eeEEEeC---CcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 188 PVELSGK---GRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 188 ~iev~~~---DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
.+.+.+. ++||++++|...|++.|+++...-.+
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~ 38 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQG 38 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence 4566664 78999999999999999999665443
No 251
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.98 E-value=19 Score=24.10 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=23.8
Q ss_pred EEEEEe---cCCccHHHHHHHHHHHCCceEEE
Q 024865 96 LVQIVC---QDHKGLLYDIMRTLKDYNIQVSY 124 (261)
Q Consensus 96 ~l~V~~---~DrpGLla~I~~vl~~~~l~I~~ 124 (261)
.|.+.+ .++||.++++..+|.+.|+++..
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~ 34 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEM 34 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEE
Confidence 445555 36899999999999999999974
No 252
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=59.38 E-value=49 Score=21.84 Aligned_cols=29 Identities=14% Similarity=0.298 Sum_probs=24.1
Q ss_pred EEEEEe---cCCccHHHHHHHHHHHCCceEEE
Q 024865 96 LVQIVC---QDHKGLLYDIMRTLKDYNIQVSY 124 (261)
Q Consensus 96 ~l~V~~---~DrpGLla~I~~vl~~~~l~I~~ 124 (261)
.|.+.+ ++.||+++++..+|.+.|+++..
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~ 34 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRA 34 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEE
Confidence 445555 57899999999999999999973
No 253
>PRK14646 hypothetical protein; Provisional
Probab=59.35 E-value=98 Score=25.36 Aligned_cols=60 Identities=10% Similarity=0.168 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhhcC
Q 024865 106 GLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ 168 (261)
Q Consensus 106 GLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L~~ 168 (261)
-+...+..++..+|+.+.+..... ..+.+++-+|+ + ++|..++ -+.++.+.++|.+.|+.
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~-~~~~~~LrV~I-Dk~~g~gVt-ldDC~~vSr~is~~LD~ 68 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQT-NQNPIVIKIII-KKTNGDDIS-LDDCALFNTPASEEIEN 68 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEe-CCCCeEEEEEE-ECCCCCCcc-HHHHHHHHHHHHHHhCc
Confidence 466778889999999999999883 23446776664 5 4443333 46788899999988864
No 254
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=57.16 E-value=85 Score=33.51 Aligned_cols=42 Identities=5% Similarity=-0.045 Sum_probs=36.2
Q ss_pred ecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865 101 CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 143 (261)
Q Consensus 101 ~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~ 143 (261)
.+-..|+|+.++.++..+|+.+..+.+.+-.+| -.+=+|||+
T Consensus 240 ~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsng-v~i~s~yv~ 281 (1002)
T PTZ00324 240 RYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNG-VQVYTFFIR 281 (1002)
T ss_pred CCcHhhHHHHHHHHHHhcCCccceEEEEEeeCC-cEEEEEEEe
Confidence 345569999999999999999999999976677 677799998
No 255
>PRK14636 hypothetical protein; Provisional
Probab=56.55 E-value=1.2e+02 Score=25.55 Aligned_cols=62 Identities=15% Similarity=0.087 Sum_probs=43.9
Q ss_pred CccHHHHHHHHHHHCCceEEEEEEEEeeC-CCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcC
Q 024865 104 HKGLLYDIMRTLKDYNIQVSYGRFSRRQR-GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 168 (261)
Q Consensus 104 rpGLla~I~~vl~~~~l~I~~AkI~t~t~-g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~ 168 (261)
.+-+...+..++..+|+.+.+..+. .. +..++-+|+=.+++..++ =+.++.+.+.|...|+.
T Consensus 4 ~~~i~~lvep~~~~~GleLvdve~~--~~~~~~~lrV~ID~~~~ggV~-lDDC~~vSr~Is~~LD~ 66 (176)
T PRK14636 4 IAALTALIEPEAKALGLDLVRVAMF--GGKSDPTLQIMAERPDTRQLV-IEDCAALSRRLSDVFDE 66 (176)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEE--cCCCCeEEEEEEECCCCCCcC-HHHHHHHHHHHHHHhcc
Confidence 3446677888999999999999987 44 446666665224333333 46788999999988864
No 256
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.46 E-value=11 Score=27.28 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=29.0
Q ss_pred CCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCC
Q 024865 194 KGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDG 241 (261)
Q Consensus 194 ~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g 241 (261)
.+.||++++|..+|+++|++|-. |.+ ++ .++ .|.+...+.
T Consensus 12 ~~~~g~~a~IF~~La~~~InVDm--I~q---s~--~sI-SftV~~sd~ 51 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVDV--VAT---SE--VSI-SLTLDPSKL 51 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEEE--EEe---cC--CEE-EEEEEhhhh
Confidence 68899999999999999999943 331 33 233 688865443
No 257
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=56.07 E-value=79 Score=23.22 Aligned_cols=67 Identities=10% Similarity=0.038 Sum_probs=47.3
Q ss_pred eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhc
Q 024865 94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL 167 (261)
Q Consensus 94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~ 167 (261)
...+.+.+.++|+.|.++-++-...|..+-.-..++..+++.+-=-|.|..+ ...+-|...|++..+
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~-------R~~~lL~~QLeKl~D 69 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSD-------RSVDLLTSQLEKLYD 69 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCC-------CChHHHHHHHHHHcc
Confidence 3578999999999999999999999999987666644456565444566421 122456666666553
No 258
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.42 E-value=40 Score=22.90 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=25.5
Q ss_pred eEEEeC--CcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 189 VELSGK--GRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 189 iev~~~--DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
+.+.+. ..||++.++..+|.+.|++|...-.+
T Consensus 4 VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g 37 (65)
T cd04918 4 ISLIGNVQRSSLILERAFHVLYTKGVNVQMISQG 37 (65)
T ss_pred EEEECCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence 445543 46899999999999999999776655
No 259
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=54.27 E-value=20 Score=25.02 Aligned_cols=31 Identities=23% Similarity=0.255 Sum_probs=24.7
Q ss_pred eeEEEe---CCcccHHHHHHHHHHhCCceEEEEE
Q 024865 188 PVELSG---KGRPLVFHDITLALKMLDICIFSAE 218 (261)
Q Consensus 188 ~iev~~---~DRpGLL~dI~~~l~~~~l~I~~Ak 218 (261)
.|++.+ .+++|+++++.++|++.++++..--
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~ 36 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILIS 36 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 456643 3789999999999999999995443
No 260
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.73 E-value=26 Score=22.80 Aligned_cols=29 Identities=28% Similarity=0.242 Sum_probs=23.4
Q ss_pred eEEEe---CCcccHHHHHHHHHHhCCceEEEE
Q 024865 189 VELSG---KGRPLVFHDITLALKMLDICIFSA 217 (261)
Q Consensus 189 iev~~---~DRpGLL~dI~~~l~~~~l~I~~A 217 (261)
+.|.+ .+.||+++++...|.+.|+++..-
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i 34 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMI 34 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEE
Confidence 45554 377999999999999999999443
No 261
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=53.55 E-value=27 Score=22.75 Aligned_cols=29 Identities=28% Similarity=0.234 Sum_probs=23.5
Q ss_pred eEEEe---CCcccHHHHHHHHHHhCCceEEEE
Q 024865 189 VELSG---KGRPLVFHDITLALKMLDICIFSA 217 (261)
Q Consensus 189 iev~~---~DRpGLL~dI~~~l~~~~l~I~~A 217 (261)
+.|.+ .+.||++++|...|.+.|+++..-
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i 34 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMI 34 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEE
Confidence 45544 477999999999999999999544
No 262
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.82 E-value=27 Score=23.12 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=23.8
Q ss_pred EEEEEe---cCCccHHHHHHHHHHHCCceEEE
Q 024865 96 LVQIVC---QDHKGLLYDIMRTLKDYNIQVSY 124 (261)
Q Consensus 96 ~l~V~~---~DrpGLla~I~~vl~~~~l~I~~ 124 (261)
.+.+.+ ++.+|+++++...|.+.|+++..
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~ 34 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIM 34 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEE
Confidence 445555 47799999999999999999974
No 263
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.79 E-value=16 Score=26.52 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=21.0
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCce
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDIC 213 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~ 213 (261)
++.|.=+||||=|+++..+|...||+
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~~anI~ 28 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIGPRNIT 28 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhCCCcee
Confidence 46677799999999999999954444
No 264
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=52.64 E-value=28 Score=22.45 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=23.2
Q ss_pred EEEEe---cCCccHHHHHHHHHHHCCceEEE
Q 024865 97 VQIVC---QDHKGLLYDIMRTLKDYNIQVSY 124 (261)
Q Consensus 97 l~V~~---~DrpGLla~I~~vl~~~~l~I~~ 124 (261)
|.+.+ .+++|+++++...|.+.++++..
T Consensus 3 i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~ 33 (65)
T cd04892 3 VSVVGAGMRGTPGVAARIFSALAEAGINIIM 33 (65)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEE
Confidence 45544 37899999999999999999974
No 265
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=51.93 E-value=1.4e+02 Score=28.22 Aligned_cols=35 Identities=9% Similarity=0.036 Sum_probs=28.5
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEE
Q 024865 92 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGR 126 (261)
Q Consensus 92 ~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~Ak 126 (261)
.....+.+.-+||||=|++++..+...+-||..-+
T Consensus 323 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~ 357 (409)
T TIGR02079 323 GLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFE 357 (409)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEE
Confidence 45678899999999999999996666776998433
No 266
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.89 E-value=31 Score=22.83 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=24.3
Q ss_pred EEEEEe---cCCccHHHHHHHHHHHCCceEEEE
Q 024865 96 LVQIVC---QDHKGLLYDIMRTLKDYNIQVSYG 125 (261)
Q Consensus 96 ~l~V~~---~DrpGLla~I~~vl~~~~l~I~~A 125 (261)
.+.+.+ .++||+.+++...|.+.|+++...
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i 35 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMI 35 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEE
Confidence 345555 468999999999999999999843
No 267
>PRK12483 threonine dehydratase; Reviewed
Probab=50.56 E-value=2.6e+02 Score=27.61 Aligned_cols=120 Identities=13% Similarity=0.149 Sum_probs=69.7
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEE-EecCCCCCCChhhH-HHHHHHHHHhhcCC
Q 024865 92 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFI-MQADGKKIVDPSKQ-NGLSSRLWMELLQP 169 (261)
Q Consensus 92 ~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~-V~~~g~~l~~~~~~-~~l~~~L~~~L~~~ 169 (261)
.....+.|.-+||||-|.+++.+|... ||..-.-.....+ . ..++. |.-. +++.. ++|.++|.+.=-..
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~-~-~~v~v~ie~~-----~~~~~~~~i~~~l~~~g~~~ 413 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAR-E-AHLFVGVQTH-----PRHDPRAQLLASLRAQGFPV 413 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCC-e-eEEEEEEEeC-----ChhhhHHHHHHHHHHCCCCe
Confidence 356788999999999999999999988 6664333211223 2 23332 2211 22343 56666665421000
Q ss_pred ceee---e----ecC---CCCcceeeeeeeEEEeCCcccHHHHHHHHHHh-CCceEEEEEEe
Q 024865 170 LRVT---V----VSR---GPDTELLVANPVELSGKGRPLVFHDITLALKM-LDICIFSAEIG 220 (261)
Q Consensus 170 ~~~~---~----~~~---~~~~~v~~~t~iev~~~DRpGLL~dI~~~l~~-~~l~I~~AkI~ 220 (261)
.... . .+. +..+.+.--.++.|.=+.|||=|.+..++|.. .+|..++=+..
T Consensus 414 ~dlsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF~YR~~ 475 (521)
T PRK12483 414 LDLTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLFHYRNH 475 (521)
T ss_pred EECCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeeeeecCC
Confidence 0000 0 000 11111211235777779999999999999987 58888777765
No 268
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.32 E-value=77 Score=21.38 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=21.2
Q ss_pred EEEEe---cCCccHHHHHHHHHHHCCceEE
Q 024865 97 VQIVC---QDHKGLLYDIMRTLKDYNIQVS 123 (261)
Q Consensus 97 l~V~~---~DrpGLla~I~~vl~~~~l~I~ 123 (261)
|.+.+ ++.||+++++..+|.+.++++.
T Consensus 3 VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i 32 (63)
T cd04920 3 VSLVGRGIRSLLHKLGPALEVFGKKPVHLV 32 (63)
T ss_pred EEEECCCcccCccHHHHHHHHHhcCCceEE
Confidence 44555 3789999999999999877663
No 269
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.90 E-value=17 Score=26.26 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=21.0
Q ss_pred cCCccHHHHHHHHHHHCCceEE
Q 024865 102 QDHKGLLYDIMRTLKDYNIQVS 123 (261)
Q Consensus 102 ~DrpGLla~I~~vl~~~~l~I~ 123 (261)
++.||..++|..+|+++|+||-
T Consensus 12 ~~~~g~~a~IF~~La~~~InVD 33 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVD 33 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEE
Confidence 6889999999999999999998
No 270
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=49.37 E-value=22 Score=24.97 Aligned_cols=29 Identities=3% Similarity=-0.009 Sum_probs=23.6
Q ss_pred eeEEEe---CCcccHHHHHHHHHHhCCceEEE
Q 024865 188 PVELSG---KGRPLVFHDITLALKMLDICIFS 216 (261)
Q Consensus 188 ~iev~~---~DRpGLL~dI~~~l~~~~l~I~~ 216 (261)
.+.|.+ .+.||++++|..+|.+.|+++..
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~ 34 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDL 34 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEE
Confidence 455543 57899999999999999999943
No 271
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=49.34 E-value=32 Score=23.73 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=23.6
Q ss_pred EEEEEe-cCCccHHHHHHHHHHHCCceEEEE
Q 024865 96 LVQIVC-QDHKGLLYDIMRTLKDYNIQVSYG 125 (261)
Q Consensus 96 ~l~V~~-~DrpGLla~I~~vl~~~~l~I~~A 125 (261)
.|+|.. ++.||.+++|.+.|+++|++|--=
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 344443 466999999999999999999843
No 272
>PRK14645 hypothetical protein; Provisional
Probab=48.55 E-value=1.5e+02 Score=24.28 Aligned_cols=62 Identities=18% Similarity=0.065 Sum_probs=43.9
Q ss_pred ccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcC
Q 024865 105 KGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 168 (261)
Q Consensus 105 pGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~ 168 (261)
.-+-..+..++..+|+.+.+..+.. ..+..++-+|+=.++|..++ -+.++.+.+.|.+.|+.
T Consensus 9 ~~i~~li~~~~~~~G~elvdve~~~-~~~~~ilrV~ID~~~~~~v~-lddC~~vSr~is~~LD~ 70 (154)
T PRK14645 9 PDLQQLAEGALEPLGYEVLEVQVQR-SGGKRIVLVRIDRKDEQPVT-VEDLERASRALEAELDR 70 (154)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEe-CCCCeEEEEEEECCCCCCcC-HHHHHHHHHHHHHHhcc
Confidence 3467778899999999999999873 23446666654224444443 46788899999888864
No 273
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=48.34 E-value=1.2e+02 Score=34.13 Aligned_cols=175 Identities=18% Similarity=0.143 Sum_probs=101.6
Q ss_pred ceEEEEEcCCCCCeEEEEEEe-cCCc--cHHHHHHHHHHHC-CceEEEEEEEEeeCCCeEEEEEEEe-cCCCCC-CChhh
Q 024865 81 NVSVTIDNSLSPGHTLVQIVC-QDHK--GLLYDIMRTLKDY-NIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKI-VDPSK 154 (261)
Q Consensus 81 ~~~V~i~~~~~~~~t~l~V~~-~Drp--GLla~I~~vl~~~-~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l-~~~~~ 154 (261)
.+++.+..++...+..+.||- +||- -+-.+|...|.+. +....+-.... .++..+.--|++. ..+... .+.
T Consensus 328 rvRlf~R~D~~grfvs~LVyvPrd~y~t~~r~~i~~~l~~~~~~~~~~~~~~~-~e~~lar~~~~~~~~~~~~~~~d~-- 404 (1528)
T PF05088_consen 328 RVRLFLRRDPFGRFVSCLVYVPRDRYNTELRERIQDILMEAFGGTSSEFYTYF-SESPLARVHFIIRVDPGHEPDIDV-- 404 (1528)
T ss_pred ceeEEEEEcCCCCEEEEEEEEehhhCCHHHHHHHHHHHHHHhCCEEEEEEEEe-cCCceEEEEEEEEeCCCCCCCCCH--
Confidence 456666777777776666666 4543 6778888888754 34444334332 4565676677776 444431 222
Q ss_pred HHHHHHHHHH-----------hhcCC---cee-----------e--eec-CCC-----------------Ccceeee---
Q 024865 155 QNGLSSRLWM-----------ELLQP---LRV-----------T--VVS-RGP-----------------DTELLVA--- 186 (261)
Q Consensus 155 ~~~l~~~L~~-----------~L~~~---~~~-----------~--~~~-~~~-----------------~~~v~~~--- 186 (261)
++|++.|.+ +|... ... + +.. ..| +..+.+.
T Consensus 405 -~~le~~l~~~~r~W~d~l~~~l~~~~g~~~~~~l~~~y~~aFp~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~l~~~~ 483 (1528)
T PF05088_consen 405 -EALEARLAEATRSWEDRLREALVERYGEEQGARLFQRYANAFPASYREDFSPEEAVRDIERLESLSGEGPLAVDLYRPA 483 (1528)
T ss_pred -HHHHHHHHHHHCCHHHHHHHHHHHhcChhhhHHHHHHHHHhCCHHHHhhCCchhHHHHHHHHHhhcCCCCceEEEeccC
Confidence 333333332 22111 000 0 000 000 1112221
Q ss_pred ------eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEee--eeccceeEEEEEEEEeCCCCCccc----hHHHHHHHH
Q 024865 187 ------NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGR--HMIGDREWEVYRVLLDEGDGLSVP----RNKIEEGVW 254 (261)
Q Consensus 187 ------t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t--~t~ger~~dv~~F~i~~~~g~~l~----~~~~~~~l~ 254 (261)
..+.|+....|..|++|.-+|..+|+.|....=-+ ...|..++- +.|++....+..+. .+.+++++.
T Consensus 484 ~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i-~~F~l~~~~~~~~~~~~~~~~~~~a~~ 562 (1528)
T PF05088_consen 484 GAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWI-HDFGLQYPDGDALDLDDIRERFEEAFE 562 (1528)
T ss_pred CCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEE-EEEEEecCCCccccHHHHHHHHHHHHH
Confidence 26889999999999999999999999997765321 112444443 57999888887665 355677777
Q ss_pred HHHccc
Q 024865 255 KLLMGW 260 (261)
Q Consensus 255 ~~l~~~ 260 (261)
+...|+
T Consensus 563 ~v~~g~ 568 (1528)
T PF05088_consen 563 AVWNGR 568 (1528)
T ss_pred HHhcCC
Confidence 766664
No 274
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=47.99 E-value=20 Score=28.93 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=25.9
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEE
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFS 216 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~ 216 (261)
.+.+.-.||.|.|+++-.++++.++||-.
T Consensus 74 TL~l~ledr~G~LS~vLd~iA~~~~nvLT 102 (150)
T COG4492 74 TLSLSLEDRVGILSDVLDVIAREEINVLT 102 (150)
T ss_pred EEEEEEhhhhhhHHHHHHHHHHhCCcEEE
Confidence 46778899999999999999999999943
No 275
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=46.34 E-value=18 Score=25.63 Aligned_cols=37 Identities=14% Similarity=0.033 Sum_probs=26.6
Q ss_pred CCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeC
Q 024865 194 KGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDE 238 (261)
Q Consensus 194 ~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~ 238 (261)
.-.||++++|..+|+++|+++- -|.+ ++ .++ .|.+..
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd--~I~~---s~--~~i-sftv~~ 48 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVD--LIST---SE--VHV-SMALHM 48 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEE--EEEe---CC--CEE-EEEEeh
Confidence 3569999999999999999993 3331 33 243 677754
No 276
>PRK00907 hypothetical protein; Provisional
Probab=45.61 E-value=1e+02 Score=23.03 Aligned_cols=65 Identities=14% Similarity=0.125 Sum_probs=44.1
Q ss_pred eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEE--EeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHH
Q 024865 94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS--RRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW 163 (261)
Q Consensus 94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~--t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~ 163 (261)
..-+.|.+.++++|...|..++..+.-....+.+. .+..|.+.-=++.|.. ++.++++.|-++|.
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~a-----ts~eQld~iY~~L~ 83 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRA-----ESREQYDAAHQALR 83 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEE-----CCHHHHHHHHHHHh
Confidence 46899999999999999999999987766555552 2256755544455542 23456666555544
No 277
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=43.72 E-value=21 Score=31.94 Aligned_cols=34 Identities=18% Similarity=0.079 Sum_probs=30.5
Q ss_pred eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
.+|.+.-.|-||+|.+|+-+|+..|.||.+--+.
T Consensus 78 HvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc 111 (309)
T KOG2663|consen 78 HVINCLVQNEPGVLSRISGVLAARGFNIDSLVVC 111 (309)
T ss_pred eeEEEEecCCchHHHHHHHHHHhccCCchheeee
Confidence 3688888999999999999999999999887764
No 278
>PRK08639 threonine dehydratase; Validated
Probab=43.62 E-value=2.3e+02 Score=26.98 Aligned_cols=34 Identities=9% Similarity=0.025 Sum_probs=27.3
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCceEEEE
Q 024865 92 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYG 125 (261)
Q Consensus 92 ~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~A 125 (261)
.....+.+.-+||||-|.+++..+...+-||..-
T Consensus 334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~ 367 (420)
T PRK08639 334 GLKHYFIVNFPQRPGALREFLDDVLGPNDDITRF 367 (420)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEE
Confidence 4567899999999999999999555655588754
No 279
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=43.47 E-value=15 Score=30.56 Aligned_cols=33 Identities=21% Similarity=0.149 Sum_probs=29.3
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
.+.+.=.|.||.|..++-.|++.|+||.+=-.+
T Consensus 6 ilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~ 38 (163)
T COG0440 6 ILSLLVENEPGVLSRVTGLFSRRGYNIESLTVG 38 (163)
T ss_pred EEEEEEECCCCeeehhhHHHHhcCcccceEEEE
Confidence 567777899999999999999999999877765
No 280
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.03 E-value=1e+02 Score=20.77 Aligned_cols=29 Identities=10% Similarity=0.214 Sum_probs=22.7
Q ss_pred EEEEEec--CCccHHHHHHHHHHHCCceEEE
Q 024865 96 LVQIVCQ--DHKGLLYDIMRTLKDYNIQVSY 124 (261)
Q Consensus 96 ~l~V~~~--DrpGLla~I~~vl~~~~l~I~~ 124 (261)
.|.+.+. ..+|+++++..+|.+.|++|..
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~ 33 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQM 33 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEE
Confidence 3444443 4689999999999999999984
No 281
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.80 E-value=48 Score=22.40 Aligned_cols=27 Identities=11% Similarity=0.063 Sum_probs=22.0
Q ss_pred eeEEEeC---CcccHHHHHHHHHHhCCceE
Q 024865 188 PVELSGK---GRPLVFHDITLALKMLDICI 214 (261)
Q Consensus 188 ~iev~~~---DRpGLL~dI~~~l~~~~l~I 214 (261)
.+.+.+. +.||+++++.++|.+.|+++
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceE
Confidence 3566664 78999999999999987777
No 282
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=41.93 E-value=26 Score=24.17 Aligned_cols=23 Identities=13% Similarity=-0.036 Sum_probs=20.2
Q ss_pred CcccHHHHHHHHHHhCCceEEEE
Q 024865 195 GRPLVFHDITLALKMLDICIFSA 217 (261)
Q Consensus 195 DRpGLL~dI~~~l~~~~l~I~~A 217 (261)
+.||.+++|...|++.|++|-.=
T Consensus 11 ~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 11 NENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred CCccHHHHHHHHHHHcCCcEEEE
Confidence 56999999999999999999433
No 283
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=41.70 E-value=45 Score=32.70 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=32.7
Q ss_pred EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCC
Q 024865 96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG 133 (261)
Q Consensus 96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g 133 (261)
.++|.|.||.|+-..|...|..+++|+..-.|. ..|
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~--~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEID--PIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEc--CCC
Confidence 478999999999999999999999999988887 445
No 284
>PRK14633 hypothetical protein; Provisional
Probab=41.61 E-value=1.9e+02 Score=23.48 Aligned_cols=56 Identities=14% Similarity=0.055 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhhcC
Q 024865 107 LLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ 168 (261)
Q Consensus 107 Lla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L~~ 168 (261)
+-..+..++..+|+.+.+-... ..|..++-+|. + ++|- +-+.++.+.++|...|+.
T Consensus 6 i~~lv~p~~~~~G~eL~dve~~--~~~~~~lrV~I-D~~~Gv---~lddC~~vSr~i~~~LD~ 62 (150)
T PRK14633 6 LYEIVEPITADLGYILWGIEVV--GSGKLTIRIFI-DHENGV---SVDDCQIVSKEISAVFDV 62 (150)
T ss_pred HHHHHHHHHHHCCCEEEEEEEE--eCCCcEEEEEE-eCCCCC---CHHHHHHHHHHHHHHhcc
Confidence 4556778899999999999987 44546666554 5 4552 346788999999988864
No 285
>KOG2797 consensus Prephenate dehydratase [Amino acid transport and metabolism]
Probab=41.35 E-value=1e+02 Score=28.55 Aligned_cols=132 Identities=17% Similarity=0.205 Sum_probs=66.8
Q ss_pred EEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEE-EEEEecCCCCCCChhhHHHHHH--HHHHhhcCCc----e
Q 024865 99 IVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEID-LFIMQADGKKIVDPSKQNGLSS--RLWMELLQPL----R 171 (261)
Q Consensus 99 V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D-~F~V~~~g~~l~~~~~~~~l~~--~L~~~L~~~~----~ 171 (261)
..-.-+|--|.+....|..++.|+..--+.. |-| -+.- .+-.+.+-..+.. ++..++-. -|.+-+.+.. +
T Consensus 187 ~~VlSHPQal~Qce~~L~~l~~~~~r~a~~d-Ta~-Aa~~~s~~~~~d~~AIAS-e~aA~ly~l~Il~~~IqDd~~NvTR 263 (377)
T KOG2797|consen 187 VRVLSHPQALGQCECSLTKLGPNAAREAVSD-TAG-AAEQISASNTADTAAIAS-ERAAELYGLNILEKNIQDDLGNVTR 263 (377)
T ss_pred eeeecCcHHHHHHHHHHHhcccceeeeeccc-hHH-HHHHHHhcccccHHHHHH-HHHHHHhcchhhhhhcccccCCeeE
Confidence 3445678889999999999998776433332 122 1100 0100111111221 22222111 1122222221 1
Q ss_pred eeeecCCC---CcceeeeeeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeee---------ccceeEEEEEEEE
Q 024865 172 VTVVSRGP---DTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHM---------IGDREWEVYRVLL 236 (261)
Q Consensus 172 ~~~~~~~~---~~~v~~~t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t---------~ger~~dv~~F~i 236 (261)
..+..+++ .+.-.|.+.|--.-.+-||.|.++-.+|+-+.||+ .||..+- .|.+-++ |.|||
T Consensus 264 FLmLar~p~ip~t~rl~ktsivf~~~~gp~vLfkvl~vfa~r~inl--tkIesRP~h~~p~r~v~~~k~f~-ylFyi 337 (377)
T KOG2797|consen 264 FLMLAREPIIPDTDRLFKTSIVFFREKGPGVLFKVLSVFAFRSINL--TKIESRPFHNRPLRVVDDSKNFE-YLFYI 337 (377)
T ss_pred EEEEeccCCCCCCCccceeeEEEEeecCCchHHHHHHHHHhhhcee--eeeecccccCCCccccccccccc-EEEEE
Confidence 11222222 11112333343446899999999999999999999 7885322 1345555 57888
No 286
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=40.01 E-value=2e+02 Score=23.28 Aligned_cols=57 Identities=14% Similarity=0.186 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhhcC
Q 024865 107 LLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ 168 (261)
Q Consensus 107 Lla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L~~ 168 (261)
+-..+..++..+|+.+.+.++... .+...+-+|. + +.| + +-+.++.+.+.+..+|+.
T Consensus 9 i~~~~~~~~~~~g~~l~dv~~~~~-~~~~~l~V~I-d~~~g--v-~iddc~~~Sr~is~~LD~ 66 (154)
T PRK00092 9 LTELIEPVVEALGYELVDVEYVKE-GRDSTLRIYI-DKEGG--I-DLDDCEEVSRQISAVLDV 66 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEec-CCCcEEEEEE-ECCCC--C-CHHHHHHHHHHHHHHhcc
Confidence 455678889999999999999842 3446665554 4 444 2 357889999999998864
No 287
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.19 E-value=1.1e+02 Score=22.10 Aligned_cols=56 Identities=20% Similarity=0.302 Sum_probs=37.4
Q ss_pred CCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhc
Q 024865 103 DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL 167 (261)
Q Consensus 103 DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~ 167 (261)
...|...++-.+|.++|+++. .+. -| .|.|-|.-+...+.+ +..+++.+.|.+.+.
T Consensus 13 ~evGF~rk~L~I~E~~~is~E--h~P---SG---ID~~Siii~~~~~~~-~~~~~i~~~i~~~~~ 68 (76)
T cd04911 13 REVGFGRKLLSILEDNGISYE--HMP---SG---IDDISIIIRDNQLTD-EKEQKILAEIKEELH 68 (76)
T ss_pred chhcHHHHHHHHHHHcCCCEe--eec---CC---CccEEEEEEccccch-hhHHHHHHHHHHhcC
Confidence 456999999999999999998 454 33 344655422333333 366677777777664
No 288
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=38.98 E-value=45 Score=23.19 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=23.8
Q ss_pred EEEEE---ecCCccHHHHHHHHHHHCCceEEE
Q 024865 96 LVQIV---CQDHKGLLYDIMRTLKDYNIQVSY 124 (261)
Q Consensus 96 ~l~V~---~~DrpGLla~I~~vl~~~~l~I~~ 124 (261)
.|.+. ..+.+|+++++..+|.++++++..
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~ 34 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVIL 34 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEE
Confidence 45553 347899999999999999999984
No 289
>PRK14632 hypothetical protein; Provisional
Probab=38.39 E-value=2.3e+02 Score=23.57 Aligned_cols=56 Identities=14% Similarity=0.122 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhhcC
Q 024865 107 LLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ 168 (261)
Q Consensus 107 Lla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L~~ 168 (261)
+-..+..++..+|+.+.+.... ..+.+++-+|+ + +.|- +-+.++.+.++|..+|+.
T Consensus 10 i~~li~pv~~~~G~eLvdve~~--~~~~~~lrV~I-D~~~GV---~ldDC~~vSr~is~~LD~ 66 (172)
T PRK14632 10 IADMAGPFLASLGLELWGIELS--YGGRTVVRLFV-DGPEGV---TIDQCAEVSRHVGLALEV 66 (172)
T ss_pred HHHHHHHHHHHCCCEEEEEEEE--eCCCcEEEEEE-ECCCCC---CHHHHHHHHHHHHHHhcc
Confidence 4566777889999999999976 44556666554 5 4442 346788999999988864
No 290
>PRK14640 hypothetical protein; Provisional
Probab=38.04 E-value=2.2e+02 Score=23.15 Aligned_cols=58 Identities=10% Similarity=0.096 Sum_probs=41.9
Q ss_pred cHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhhcC
Q 024865 106 GLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ 168 (261)
Q Consensus 106 GLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L~~ 168 (261)
-+...+..++..+|+.+.+-..... .+..++-+|. + ++| + +-+.++.+.++|..+|+.
T Consensus 7 ~i~~li~p~~~~~G~el~dve~~~~-~~~~~lrV~I-D~~~g--v-~lddC~~vSr~is~~LD~ 65 (152)
T PRK14640 7 RLTDLLEAPVVALGFELWGIEFIRA-GKHSTLRVYI-DGENG--V-SVENCAEVSHQVGAIMDV 65 (152)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEec-CCCcEEEEEE-ECCCC--C-CHHHHHHHHHHHHHHhcc
Confidence 3556777889999999999998732 3446665554 5 445 3 346889999999998874
No 291
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=37.96 E-value=69 Score=30.56 Aligned_cols=33 Identities=18% Similarity=0.110 Sum_probs=30.3
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
.++|.|.||.||..++-..|...+|++..-.|.
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid 34 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEID 34 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeec
Confidence 489999999999999999999999999877774
No 292
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=37.78 E-value=35 Score=23.37 Aligned_cols=32 Identities=25% Similarity=0.193 Sum_probs=24.8
Q ss_pred eEEEeC--CcccHHHHHHHHHHhCCceEEEEEEe
Q 024865 189 VELSGK--GRPLVFHDITLALKMLDICIFSAEIG 220 (261)
Q Consensus 189 iev~~~--DRpGLL~dI~~~l~~~~l~I~~AkI~ 220 (261)
+.+.+. -+||++.++.++|.+.|++++.--.+
T Consensus 5 VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~ 38 (66)
T cd04915 5 VSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQS 38 (66)
T ss_pred EEEECCCCCcchHHHHHHHHHHHCCCCEEEEEec
Confidence 444443 37899999999999999999665554
No 293
>PRK06635 aspartate kinase; Reviewed
Probab=37.75 E-value=49 Score=31.07 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=28.0
Q ss_pred CeEEEEEEe---cCCccHHHHHHHHHHHCCceEEE
Q 024865 93 GHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSY 124 (261)
Q Consensus 93 ~~t~l~V~~---~DrpGLla~I~~vl~~~~l~I~~ 124 (261)
+.+.+.|.+ ++.||.++++..+|.++|+||..
T Consensus 339 ~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~ 373 (404)
T PRK06635 339 DIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQM 373 (404)
T ss_pred CeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEE
Confidence 456788865 79999999999999999999985
No 294
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=36.96 E-value=1.4e+02 Score=20.69 Aligned_cols=52 Identities=10% Similarity=0.275 Sum_probs=36.2
Q ss_pred ccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHH
Q 024865 105 KGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW 163 (261)
Q Consensus 105 pGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~ 163 (261)
..+++.+++.+ ...+||..|.|. ..++..+-.|++.-.|. ++..++..+.|.
T Consensus 16 ~piis~l~~~~-~v~~nIl~g~i~--~i~~~~~G~l~l~l~g~----~~~~~~a~~~L~ 67 (76)
T PF09383_consen 16 EPIISQLIREF-GVDVNILHGNIE--EIQGTPFGILILELPGD----DEEIEKAIAYLR 67 (76)
T ss_dssp SCHHHHHHHHH-T-EEEEEEEEEE--EETTEEEEEEEEEEES-----HHHHHHHHHHHH
T ss_pred chHHHHHHHHh-CCCEEEEEEEeE--EcCCeeEEEEEEEEECC----HHHHHHHHHHHH
Confidence 47888888887 688999999999 56668999999873242 344455545444
No 295
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=34.78 E-value=1.5e+02 Score=20.18 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=23.1
Q ss_pred EEEEEEec--CCccHHHHHHHHHHHCCceEE
Q 024865 95 TLVQIVCQ--DHKGLLYDIMRTLKDYNIQVS 123 (261)
Q Consensus 95 t~l~V~~~--DrpGLla~I~~vl~~~~l~I~ 123 (261)
+.|.+.+. .+||+++++..+|.+.|++++
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~ 33 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPI 33 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEE
Confidence 34555542 268999999999999999998
No 296
>PRK14630 hypothetical protein; Provisional
Probab=34.76 E-value=2.4e+02 Score=22.70 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=43.7
Q ss_pred cCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcC
Q 024865 102 QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 168 (261)
Q Consensus 102 ~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~ 168 (261)
.|..-+-..+..++..+|+.+.+..... ..+..++-+|.=.++| + +-+.++.+.+++...|+.
T Consensus 5 ~~~~~i~~li~~~~~~~G~eLvdve~~~-~~~~~~lrV~Id~~~g--V-~idDC~~vSr~i~~~ld~ 67 (143)
T PRK14630 5 FDNSEVYNLIKNVTDRLGIEIIEINTFR-NRNEGKIQIVLYKKDS--F-GVDTLCDLHKMILLILEA 67 (143)
T ss_pred ccHHHHHHHHHHHHHHcCCEEEEEEEEe-cCCCcEEEEEEECCCC--C-CHHHHHHHHHHHHHHhcc
Confidence 3555677788899999999999999773 2344666665422445 2 246788888888777754
No 297
>PRK05925 aspartate kinase; Provisional
Probab=34.43 E-value=4.3e+02 Score=25.45 Aligned_cols=118 Identities=16% Similarity=0.099 Sum_probs=64.1
Q ss_pred CeEEEEEEec-CCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCCce
Q 024865 93 GHTLVQIVCQ-DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLR 171 (261)
Q Consensus 93 ~~t~l~V~~~-DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~~~ 171 (261)
+.+.+.+... ..+|.+++|..+|.++|++|..- .+ + + . -=+|.|.. .. .. + ...+.|...+..-..
T Consensus 299 ~~~~i~v~~~~~~~~~~~~if~~l~~~~I~vd~i--~s-~-~-~-sis~~i~~-~~-~~-~----~~~~~l~~~l~~~~~ 365 (440)
T PRK05925 299 NQALWSVDYNSLGLVRLEDVLGILRSLGIVPGLV--MA-Q-N-L-GVYFTIDD-DD-IS-E----EYPQHLTDALSAFGT 365 (440)
T ss_pred CEEEEEEecCCcchhHHHHHHHHHHHcCCcEEEE--ec-c-C-C-EEEEEEec-hh-cc-H----HHHHHHHHHhcCCce
Confidence 4556666432 24788999999999999999632 21 2 2 1 11355542 11 11 1 122223333332111
Q ss_pred eeeecCCCCcceeeeeeeEEEeC--CcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCC
Q 024865 172 VTVVSRGPDTELLVANPVELSGK--GRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG 239 (261)
Q Consensus 172 ~~~~~~~~~~~v~~~t~iev~~~--DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~ 239 (261)
+... ..+ ..|.|.+. -.+|+.+++..+|.+.|++|.. |+ .|+. .+ .|.|...
T Consensus 366 i~~~-----~~~---a~VsvVG~gm~~~~v~~~~~~aL~~~~Ini~~--i~---~s~~--~i-s~vV~~~ 419 (440)
T PRK05925 366 VSCE-----GPL---ALITMIGAKLASWKVVRTFTEKLRGYQTPVFC--WC---QSDM--AL-NLVVNEE 419 (440)
T ss_pred EEEE-----CCE---EEEEEeCCCcccccHHHHHHHHHhhCCCCEEE--EE---CCCc--eE-EEEEehH
Confidence 1110 011 25666653 2378999999999999999955 44 2344 33 4777444
No 298
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=34.41 E-value=66 Score=30.16 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=28.6
Q ss_pred CCeEEEEEEe---cCCccHHHHHHHHHHHCCceEEE
Q 024865 92 PGHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSY 124 (261)
Q Consensus 92 ~~~t~l~V~~---~DrpGLla~I~~vl~~~~l~I~~ 124 (261)
.+.+.|.|.+ +++||.++++..+|...|+||..
T Consensus 335 ~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 335 EGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 4667788887 47899999999999999999983
No 299
>PF11373 DUF3175: Protein of unknown function (DUF3175); InterPro: IPR021513 This entry is represented by Ralstonia phage RSL1, Orf186. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=34.38 E-value=15 Score=27.09 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=20.1
Q ss_pred EEEEeCCCCCccc--hHHHHHHHHHHHc
Q 024865 233 RVLLDEGDGLSVP--RNKIEEGVWKLLM 258 (261)
Q Consensus 233 ~F~i~~~~g~~l~--~~~~~~~l~~~l~ 258 (261)
+||| |..|..|+ +.+++++-+.||+
T Consensus 55 ~FYI-NRAGk~L~~~rr~~LE~AK~eLR 81 (86)
T PF11373_consen 55 NFYI-NRAGKNLPKERRAVLERAKDELR 81 (86)
T ss_pred HHHH-hcccccCCHHHHHHHHHHHHHHH
Confidence 5999 88899999 5667777788886
No 300
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=33.50 E-value=1.9e+02 Score=21.19 Aligned_cols=55 Identities=9% Similarity=0.140 Sum_probs=37.1
Q ss_pred eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc
Q 024865 187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP 245 (261)
Q Consensus 187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~ 245 (261)
..+++.+.++|+.|..|-++-..-|..+-.-.-+....++++ .++ |.| + ..++++
T Consensus 4 yqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~-nie-~tV-~-s~R~~~ 58 (86)
T COG3978 4 YQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNA-NIE-LTV-D-SDRSVD 58 (86)
T ss_pred EEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccc-eEE-EEE-c-CCCChH
Confidence 368999999999999999999999999844433332234443 332 444 2 345555
No 301
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.26 E-value=2.7e+02 Score=22.83 Aligned_cols=80 Identities=16% Similarity=0.137 Sum_probs=53.9
Q ss_pred ccHHHHHHHHHHHCCceEEEEEEEEeeCC-CeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCCceeeeecCCCCcce
Q 024865 105 KGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTEL 183 (261)
Q Consensus 105 pGLla~I~~vl~~~~l~I~~AkI~t~t~g-~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~~~~~~~~~~~~~~v 183 (261)
..++.-+..++..+|+.+.+.++. ..| +.++-+|.=.+ |.. +=+.++.+.+++...|+.+.. +
T Consensus 8 ~~v~~liep~~~~lG~ELv~ve~~--~~~~~~~lrI~id~~-g~v--~lddC~~vSr~is~~LD~edp-----------i 71 (153)
T COG0779 8 EKVTELIEPVVESLGFELVDVEFV--KEGRDSVLRIYIDKE-GGV--TLDDCADVSRAISALLDVEDP-----------I 71 (153)
T ss_pred HHHHHHHHHhHhhcCcEEEEEEEE--EcCCCcEEEEEeCCC-CCC--CHHHHHHHHHHHHHHhccCCc-----------c
Confidence 356777888999999999999999 554 57777764224 332 235788888898888873321 1
Q ss_pred eeeeeeEEEeC--CcccHH
Q 024865 184 LVANPVELSGK--GRPLVF 200 (261)
Q Consensus 184 ~~~t~iev~~~--DRpGLL 200 (261)
.-...+||+++ |||=.-
T Consensus 72 ~~~Y~LEVSSPGldRpL~~ 90 (153)
T COG0779 72 EGAYFLEVSSPGLDRPLKT 90 (153)
T ss_pred cccEEEEeeCCCCCCCcCC
Confidence 11236888865 787443
No 302
>PRK14647 hypothetical protein; Provisional
Probab=32.56 E-value=2.8e+02 Score=22.71 Aligned_cols=56 Identities=16% Similarity=0.165 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHCCceEEEEEEEEeeCC-CeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhhcC
Q 024865 107 LLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ 168 (261)
Q Consensus 107 Lla~I~~vl~~~~l~I~~AkI~t~t~g-~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L~~ 168 (261)
+-..+..++..+|+.+.+..+. ..| ..++-+|+ + +.|- +-+.++.+.++|...|+.
T Consensus 10 i~~~i~~~~~~~G~~L~dv~~~--~~~~~~~lrV~I-D~~~gv---slddC~~vSr~is~~LD~ 67 (159)
T PRK14647 10 VTELAEQVLSSLGLELVELEYK--REGREMVLRLFI-DKEGGV---NLDDCAEVSRELSEILDV 67 (159)
T ss_pred HHHHHHHHHHHCCCEEEEEEEE--ecCCCeEEEEEE-eCCCCC---CHHHHHHHHHHHHHHHcc
Confidence 4556677899999999999988 444 46666654 5 4442 246788999999998874
No 303
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.16 E-value=96 Score=20.65 Aligned_cols=27 Identities=26% Similarity=0.202 Sum_probs=20.4
Q ss_pred eeEEEeC---CcccHHHHHHHHHHhCCceE
Q 024865 188 PVELSGK---GRPLVFHDITLALKMLDICI 214 (261)
Q Consensus 188 ~iev~~~---DRpGLL~dI~~~l~~~~l~I 214 (261)
.+.+.+. ++||+++++..+|.+.++.+
T Consensus 3 lIsvvG~~~~~~~~v~~~i~~~L~~i~i~~ 32 (64)
T cd04917 3 LVALIGNDISETAGVEKRIFDALEDINVRM 32 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHhCCeEE
Confidence 4666665 78999999999998644443
No 304
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=32.16 E-value=3.6e+02 Score=26.40 Aligned_cols=115 Identities=13% Similarity=0.188 Sum_probs=61.8
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEE-ecCCCCCCChhhHHHHHHHHHHhhcCCc
Q 024865 92 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM-QADGKKIVDPSKQNGLSSRLWMELLQPL 170 (261)
Q Consensus 92 ~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V-~~~g~~l~~~~~~~~l~~~L~~~L~~~~ 170 (261)
.....+.|.-+||||=|.+++.+|... ||..-.=.- ...+. ..+|.. .- .+++..+.|.+.|.+.=-.-.
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~-~~~~~-a~v~vgie~-----~~~~~~~~l~~~L~~~Gy~~~ 393 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRY-ADRKD-AHIFVGVQL-----SNPQERQEILARLNDGGYSVV 393 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEe-cCCCe-EEEEEEEEe-----CCHHHHHHHHHHHHHcCCCeE
Confidence 356688899999999999999999974 554322211 12222 234432 21 234677777777765210000
Q ss_pred ee---eeec---C----CCCcceeeeeeeEEEeCCcccHHHHHHHHH-HhCCceEE
Q 024865 171 RV---TVVS---R----GPDTELLVANPVELSGKGRPLVFHDITLAL-KMLDICIF 215 (261)
Q Consensus 171 ~~---~~~~---~----~~~~~v~~~t~iev~~~DRpGLL~dI~~~l-~~~~l~I~ 215 (261)
.. +..+ | +.++.+.-.-+..+.=+-|||=|-+.-.+| -+.+|+.+
T Consensus 394 dls~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fperpgaL~~Fl~~l~~~~~It~f 449 (499)
T TIGR01124 394 DLTDDELAKLHVRYMVGGRPPHVENERLYSFEFPERPGALLRFLNTLQGYWNISLF 449 (499)
T ss_pred ECCCCHHHHHHHHhccCCCCCCCCCceEEEEeCCCCccHHHHHHHhcCCCCceeeE
Confidence 00 0000 0 111111111256677799999888776666 33444443
No 305
>PRK14639 hypothetical protein; Provisional
Probab=31.29 E-value=2.8e+02 Score=22.28 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=37.6
Q ss_pred HHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhhcC
Q 024865 111 IMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ 168 (261)
Q Consensus 111 I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L~~ 168 (261)
+..++..+|+.+.+...... .+..++-+|+ + +.| ++ -+.++.+.+.|.+.|+.
T Consensus 3 ~ep~~~~~G~eLvdve~~~~-~~~~~lrV~I-d~~~g--v~-iddC~~vSr~is~~LD~ 56 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSE-NGRKIYRVYI-TKEGG--VN-LDDCERLSELLSPIFDV 56 (140)
T ss_pred hhHhHHhCCCEEEEEEEEec-CCCcEEEEEE-eCCCC--CC-HHHHHHHHHHHHHHhcc
Confidence 34578899999999998832 3446665554 5 434 33 46889999999998874
No 306
>PF05117 DUF695: Family of unknown function (DUF695) ; InterPro: IPR016097 This entry is found at the N terminus of a number of proteobacterial proteins of unknown function.
Probab=30.30 E-value=2e+02 Score=22.45 Aligned_cols=33 Identities=24% Similarity=0.201 Sum_probs=24.0
Q ss_pred HHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCC
Q 024865 202 DITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG 239 (261)
Q Consensus 202 dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~ 239 (261)
.|...|...+..|..++++ ..|.| ++ .||+.+.
T Consensus 67 ~i~~~l~~~~~~i~vG~~t--~~g~r--~~-~fY~~d~ 99 (136)
T PF05117_consen 67 AIIEALEADGNAIYVGRIT--GNGRR--EF-YFYCKDP 99 (136)
T ss_pred HHHHHhhcCCcceEEEEEE--ECCEE--EE-EEEECCh
Confidence 4566777788788889998 56666 55 4998655
No 307
>PRK08526 threonine dehydratase; Provisional
Probab=28.86 E-value=1.9e+02 Score=27.49 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=27.7
Q ss_pred eeEEEeCCcccHHHHHHHHHHhCCceEEEEEE
Q 024865 188 PVELSGKGRPLVFHDITLALKMLDICIFSAEI 219 (261)
Q Consensus 188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI 219 (261)
.+.|.-.||||=|.++...+.+.+.||..-.-
T Consensus 328 ~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~ 359 (403)
T PRK08526 328 KLHVTLVDKPGALMGLTDILKEANANIVKIDY 359 (403)
T ss_pred EEEEEcCCCCCHHHHHHHHHccCCCcEEEEEE
Confidence 67788899999999999999999999954443
No 308
>PRK14631 hypothetical protein; Provisional
Probab=27.74 E-value=3.6e+02 Score=22.52 Aligned_cols=93 Identities=13% Similarity=0.108 Sum_probs=57.6
Q ss_pred cHHHHHHHHHHHCCceEEEEEEEEeeC-CCeEEEEEEEec----------------CCCCCCChhhHHHHHHHHHHhhcC
Q 024865 106 GLLYDIMRTLKDYNIQVSYGRFSRRQR-GNCEIDLFIMQA----------------DGKKIVDPSKQNGLSSRLWMELLQ 168 (261)
Q Consensus 106 GLla~I~~vl~~~~l~I~~AkI~t~t~-g~~v~D~F~V~~----------------~g~~l~~~~~~~~l~~~L~~~L~~ 168 (261)
-+...+.-++..+|+.+.+.... .. +.+++-+|+=.+ .+..++ -+.++.+.++|...|+.
T Consensus 9 ~i~~li~p~~~~~G~eLvdve~~--~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvt-iddC~~vSr~is~~LD~ 85 (174)
T PRK14631 9 ALTDIIAPAVAACGVDLWGIEFL--PQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIG-VEDCVRVTQQVGAMLDV 85 (174)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEE--eCCCceEEEEEEecCcccccccccccccccccCCCcC-HHHHHHHHHHHHHHhcc
Confidence 45667788899999999999988 44 446777765322 112232 46788899999988864
Q ss_pred CceeeeecCCCCcceeeeeeeEEEeC--CcccHHHHHHHHHHhCCceE
Q 024865 169 PLRVTVVSRGPDTELLVANPVELSGK--GRPLVFHDITLALKMLDICI 214 (261)
Q Consensus 169 ~~~~~~~~~~~~~~v~~~t~iev~~~--DRpGLL~dI~~~l~~~~l~I 214 (261)
..- +.....+||+++ ||| |....+--+-.|=.|
T Consensus 86 ~d~-----------i~~~Y~LEVSSPGldRp--L~~~~df~r~~G~~V 120 (174)
T PRK14631 86 HDP-----------ISGEYALEVSSPGWDRP--FFQLEQLQGYIGQQV 120 (174)
T ss_pred ccc-----------CCCCeEEEEeCCCCCCc--CCCHHHHHHhCCCeE
Confidence 321 111235788765 555 555555444444433
No 309
>PRK14638 hypothetical protein; Provisional
Probab=26.79 E-value=3.5e+02 Score=21.97 Aligned_cols=58 Identities=10% Similarity=0.094 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhhcC
Q 024865 107 LLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ 168 (261)
Q Consensus 107 Lla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L~~ 168 (261)
+-..+..++..+|+.+.+...... .++.++-+|. + ++|. ++ -+.++.+.+.|.+.|+.
T Consensus 10 i~~~~~~i~~~~G~elvdve~~~~-~~~~~lrV~I-D~~~G~-v~-lddC~~vSr~is~~LD~ 68 (150)
T PRK14638 10 VRKEAERIAEEQGLEIFDVQYRRE-SRGWVLRIII-DNPVGY-VS-VRDCELFSREIERFLDR 68 (150)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEec-CCCcEEEEEE-ECCCCC-cC-HHHHHHHHHHHHHHhcc
Confidence 455677889999999999888731 3446776665 5 4453 22 46788999999988864
No 310
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=26.77 E-value=51 Score=23.19 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=15.9
Q ss_pred cccHHHHHHHHHHhCCceE
Q 024865 196 RPLVFHDITLALKMLDICI 214 (261)
Q Consensus 196 RpGLL~dI~~~l~~~~l~I 214 (261)
..-=||||+.+|..+|+--
T Consensus 42 ~~RRlYDI~NVLealgli~ 60 (71)
T PF02319_consen 42 QRRRLYDIINVLEALGLIE 60 (71)
T ss_dssp HCHHHHHHHHHHHHCTSEE
T ss_pred ccchhhHHHHHHHHhCcee
Confidence 4456999999999999865
No 311
>PLN02550 threonine dehydratase
Probab=26.42 E-value=6.8e+02 Score=25.24 Aligned_cols=120 Identities=8% Similarity=0.049 Sum_probs=69.3
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCCcee
Q 024865 93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRV 172 (261)
Q Consensus 93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~~~~ 172 (261)
....+.|.-+||||-|.+++.+|... ||..-.-.....+ .+.=.+-|.- .+++..++|.++|.+.=-.-..+
T Consensus 416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~-~~~v~v~ie~-----~~~~~~~~i~~~l~~~g~~~~~l 487 (591)
T PLN02550 416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEK-EALVLYSVGV-----HTEQELQALKKRMESAQLRTVNL 487 (591)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCC-ceEEEEEEEe-----CCHHHHHHHHHHHHHCCCCeEeC
Confidence 34678899999999999999999986 6654332211122 3322233331 23567777777776521000000
Q ss_pred -------eeecCC--CCcceeeeeeeEEEeCCcccHHHHHHHHHHh-CCceEEEEEEe
Q 024865 173 -------TVVSRG--PDTELLVANPVELSGKGRPLVFHDITLALKM-LDICIFSAEIG 220 (261)
Q Consensus 173 -------~~~~~~--~~~~v~~~t~iev~~~DRpGLL~dI~~~l~~-~~l~I~~AkI~ 220 (261)
...+.- --.++.---.+.+.=+.|||=|.+...+|.. .+|..++=+..
T Consensus 488 ~~~~~~~~~LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~~~nITeF~YR~~ 545 (591)
T PLN02550 488 TSNDLVKDHLRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSPRWNISLFHYRGQ 545 (591)
T ss_pred CCChHHhhhhhheeccccccCceEEEEEEecCcCCHHHHHHHhhCCCCceeeEEeecC
Confidence 000000 0011211125677779999999999999987 58887766643
No 312
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=24.57 E-value=1.7e+02 Score=21.25 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=32.6
Q ss_pred eEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc
Q 024865 189 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP 245 (261)
Q Consensus 189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~ 245 (261)
+-+...++ +..+.+.|.+.|+.+..+-... .|.+ .....||+.|++|..+.
T Consensus 71 i~~~~~~~---~~~~~~~l~~~G~~~~~~~~~~--~~~~-~~~~~~~~~DPdG~~ve 121 (125)
T cd07253 71 LCLITEPP---IDELVAHLEAHGVPIEEGPVPR--TGAR-GPITSVYFRDPDGNLIE 121 (125)
T ss_pred EEEEeccc---HHHHHHHHHHCCceeecCcccc--cCCC-CCccEEEEECCCCCEEE
Confidence 33444444 7888999999999886544331 1211 01134899999999874
No 313
>PRK09084 aspartate kinase III; Validated
Probab=24.00 E-value=3.3e+02 Score=26.19 Aligned_cols=44 Identities=14% Similarity=0.048 Sum_probs=31.7
Q ss_pred eeEEEeC---CcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCC
Q 024865 188 PVELSGK---GRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG 239 (261)
Q Consensus 188 ~iev~~~---DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~ 239 (261)
.+.|.+. +.||.+++|..+|.++|++|-.--- ++. ++ .|+|...
T Consensus 308 lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~s-----se~--sI-s~~i~~~ 354 (448)
T PRK09084 308 LLTLHSLNMLHARGFLAEVFGILARHKISVDLITT-----SEV--SV-SLTLDTT 354 (448)
T ss_pred EEEEecCCCCccccHHHHHHHHHHHcCCeEEEEec-----cCc--EE-EEEEech
Confidence 5677654 7899999999999999999954321 222 33 6888554
No 314
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=23.86 E-value=88 Score=25.89 Aligned_cols=30 Identities=17% Similarity=0.302 Sum_probs=27.4
Q ss_pred EEEEEEecCCccHHHHHHHHHHHCCceEEE
Q 024865 95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSY 124 (261)
Q Consensus 95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~ 124 (261)
..+.|.-+|+||-|-.+-.=|+..|.||..
T Consensus 6 itldIEL~D~PGQLl~vLqPls~~g~NiIt 35 (170)
T COG2061 6 ITLDIELKDKPGQLLKVLQPLSKTGANIIT 35 (170)
T ss_pred EEEEEEecCCCcchhhhhcchhhcCccEEE
Confidence 467888899999999999999999999984
No 315
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=23.38 E-value=2.4e+02 Score=19.98 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=23.3
Q ss_pred HHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCcc
Q 024865 200 FHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSV 244 (261)
Q Consensus 200 L~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l 244 (261)
+.++.+.+.++|+.+...--. .-.|. ..||+.|++|+.+
T Consensus 67 v~~~~~~l~~~G~~~~~~~~~-~~~g~-----~~~~~~DPdG~~i 105 (108)
T PF12681_consen 67 VDALYERLKELGAEIVTEPRD-DPWGQ-----RSFYFIDPDGNRI 105 (108)
T ss_dssp HHHHHHHHHHTTSEEEEEEEE-ETTSE-----EEEEEE-TTS-EE
T ss_pred HHHHHHHHHHCCCeEeeCCEE-cCCCe-----EEEEEECCCCCEE
Confidence 445556888999988553222 11222 3499999999876
No 316
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=23.26 E-value=2.6e+02 Score=19.20 Aligned_cols=30 Identities=3% Similarity=0.012 Sum_probs=20.0
Q ss_pred HHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865 112 MRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 143 (261)
Q Consensus 112 ~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~ 143 (261)
......+|+.+..=.+. |.+|+++.+|.|.
T Consensus 2 ~~~i~~~GY~~E~h~V~--T~DGYiL~l~RIp 31 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVT--TEDGYILTLHRIP 31 (63)
T ss_dssp HHHHHHTT---EEEEEE---TTSEEEEEEEE-
T ss_pred HHHHHHcCCCcEEEEEE--eCCCcEEEEEEcc
Confidence 45677889999887887 5555999999996
No 317
>PRK08841 aspartate kinase; Validated
Probab=23.20 E-value=1.3e+02 Score=28.49 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=29.6
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCceEE
Q 024865 92 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVS 123 (261)
Q Consensus 92 ~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~ 123 (261)
.+.+.|.+.+...||+.+++..+|.+.|+||.
T Consensus 316 ~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~ 347 (392)
T PRK08841 316 ESVSLLTLVGLEANGMVEHACNLLAQNGIDVR 347 (392)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHhCCCCEE
Confidence 46788999999999999999999999999996
No 318
>PF13037 DUF3898: Domain of unknown function (DUF3898)
Probab=23.07 E-value=1.5e+02 Score=22.12 Aligned_cols=14 Identities=21% Similarity=0.209 Sum_probs=11.5
Q ss_pred HHhCCceEEEEEEe
Q 024865 207 LKMLDICIFSAEIG 220 (261)
Q Consensus 207 l~~~~l~I~~AkI~ 220 (261)
|+++|-+||.||++
T Consensus 40 LaDfG~~iHiAKv~ 53 (91)
T PF13037_consen 40 LADFGETIHIAKVN 53 (91)
T ss_pred HHhhccceeEEEEC
Confidence 45788899999987
No 319
>PRK08210 aspartate kinase I; Reviewed
Probab=22.60 E-value=1.2e+02 Score=28.62 Aligned_cols=30 Identities=13% Similarity=0.069 Sum_probs=25.2
Q ss_pred eeEEEeCCc-ccHHHHHHHHHHhCCceEEEE
Q 024865 188 PVELSGKGR-PLVFHDITLALKMLDICIFSA 217 (261)
Q Consensus 188 ~iev~~~DR-pGLL~dI~~~l~~~~l~I~~A 217 (261)
.++|...+. ||.+++|..+|.++|++|..-
T Consensus 273 ~isv~~~~~~~g~la~If~~L~~~~I~i~~i 303 (403)
T PRK08210 273 QIKVKAKENAYDLQQEVFKALAEAGISVDFI 303 (403)
T ss_pred EEEEecCCCcchHHHHHHHHHHHcCCeEEEE
Confidence 566766555 999999999999999999665
No 320
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=22.56 E-value=1.9e+02 Score=27.89 Aligned_cols=104 Identities=13% Similarity=0.162 Sum_probs=54.8
Q ss_pred eEEEEEEec---CCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCCc
Q 024865 94 HTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPL 170 (261)
Q Consensus 94 ~t~l~V~~~---DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~~ 170 (261)
-|.+.|.+. -..|.|++|..+|..+|++|- -|.|+ . |-=+.-+. -.+. .-.+-|+..|.++...-.
T Consensus 393 v~mldI~Str~l~q~GFLAkvFti~ek~~isVD--vvaTS-E---V~iSltL~--~~~~---~sreliq~~l~~a~eeL~ 461 (559)
T KOG0456|consen 393 VTMLDIASTRMLGQHGFLAKVFTIFEKLGISVD--VVATS-E---VSISLTLD--PSKL---DSRELIQGELDQAVEELE 461 (559)
T ss_pred EEEEEecccchhhhhhHHHHHHHHHHHhCcEEE--EEEee-e---EEEEEecC--hhhh---hhHHHHHhhHHHHHHHHH
Confidence 345555442 356999999999999999986 35433 1 11111111 1111 111223333333322100
Q ss_pred ---eeeeecCCCCcceeeeeeeEEEe--CCcccHHHHHHHHHHhCCceEEE
Q 024865 171 ---RVTVVSRGPDTELLVANPVELSG--KGRPLVFHDITLALKMLDICIFS 216 (261)
Q Consensus 171 ---~~~~~~~~~~~~v~~~t~iev~~--~DRpGLL~dI~~~l~~~~l~I~~ 216 (261)
.+..... ..+|.+.+ ..-.|+|-..-++|++.||||+.
T Consensus 462 ki~~vdll~~--------~sIiSLiGnvq~ss~i~~rmF~~l~e~giNvqM 504 (559)
T KOG0456|consen 462 KIAVVDLLKG--------RSIISLIGNVQNSSGILERMFCVLAENGINVQM 504 (559)
T ss_pred Hhhhhhhhcc--------chHHhhhhhhhhhhHHHHHHHHHHHhcCcceee
Confidence 0111111 01344444 35579999999999999999964
No 321
>PRK09224 threonine dehydratase; Reviewed
Probab=22.55 E-value=6.7e+02 Score=24.53 Aligned_cols=113 Identities=13% Similarity=0.089 Sum_probs=60.2
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEE-ecCCCCCCChhhHHHHHHHHHHhh-----
Q 024865 93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM-QADGKKIVDPSKQNGLSSRLWMEL----- 166 (261)
Q Consensus 93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V-~~~g~~l~~~~~~~~l~~~L~~~L----- 166 (261)
....+.|.-+||||=|.+++.+|. +-||..-.-. ..+..-..+|+. .-.+. +...+.|.+.|.+.=
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr--~~~~~~a~V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~ 398 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYR--YADAKEAHIFVGVQLSRG----QEERAEIIAQLRAHGYPVVD 398 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEE--ecCCCeEEEEEEEEeCCh----hhHHHHHHHHHHHcCCCeEE
Confidence 466889999999999999999999 5666532222 122122334432 31111 122567777765421
Q ss_pred -cCCcee-eeec---CCCCcceeeeeeeEEEeCCcccHHHHHHHHHHhCCceE
Q 024865 167 -LQPLRV-TVVS---RGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICI 214 (261)
Q Consensus 167 -~~~~~~-~~~~---~~~~~~v~~~t~iev~~~DRpGLL~dI~~~l~~~~l~I 214 (261)
++.... ...+ -+..+.+.-.-.+.+.=+.|||=|-+...+|. -+-||
T Consensus 399 ls~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~I 450 (504)
T PRK09224 399 LSDDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNI 450 (504)
T ss_pred CCCCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCee
Confidence 000000 0000 01111111112567777999999988888776 34454
No 322
>PLN02551 aspartokinase
Probab=20.91 E-value=6.7e+02 Score=24.75 Aligned_cols=32 Identities=16% Similarity=0.433 Sum_probs=27.6
Q ss_pred CCeEEEEEEec--CCccHHHHHHHHHHHCCceEE
Q 024865 92 PGHTLVQIVCQ--DHKGLLYDIMRTLKDYNIQVS 123 (261)
Q Consensus 92 ~~~t~l~V~~~--DrpGLla~I~~vl~~~~l~I~ 123 (261)
.+...|.|.+. ..||+++++..+|...|+||+
T Consensus 443 ~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~ 476 (521)
T PLN02551 443 QGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQ 476 (521)
T ss_pred CCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeE
Confidence 35777888763 689999999999999999998
No 323
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=20.82 E-value=1.9e+02 Score=20.87 Aligned_cols=49 Identities=12% Similarity=0.009 Sum_probs=29.6
Q ss_pred EEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCcc
Q 024865 190 ELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSV 244 (261)
Q Consensus 190 ev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l 244 (261)
-..+.+..- |....+.|++.|+.+....-. ..... ...||+.|++|..+
T Consensus 78 ~~~~~~~~d-l~~~~~~l~~~g~~~~~~~~~--~~~~~---~~~~y~~Dp~G~~i 126 (128)
T PF00903_consen 78 AFLAFDVDD-LDAAYERLKAQGVEIVEEPDR--YYFGS---GYSFYFRDPDGNLI 126 (128)
T ss_dssp EEEESSHHH-HHHHHHHHHHTTGEEEEEEEE--HSTTC---EEEEEEEETTSEEE
T ss_pred EEEeccHHH-HHHHHHHHhhcCccEEecCCC--CCCCC---EEEEEEECCCCCEE
Confidence 333344333 356678899999998655322 22122 23478999999765
No 324
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=20.65 E-value=2.2e+02 Score=20.92 Aligned_cols=51 Identities=22% Similarity=0.249 Sum_probs=31.2
Q ss_pred CcccHH----HHHHHHHHhCCce-EEEEEEeeeeccceeEEEEEEEEeCCCCCccc--hHHHHHHHH
Q 024865 195 GRPLVF----HDITLALKMLDIC-IFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP--RNKIEEGVW 254 (261)
Q Consensus 195 DRpGLL----~dI~~~l~~~~l~-I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~--~~~~~~~l~ 254 (261)
=+||+| ..|.++|..+|.+ |...+++ .++-|-+...+-.+.. .+.+|++|.
T Consensus 10 lK~~VlDPqG~ti~~aL~~lg~~~V~~vR~g---------K~~el~ld~~~~e~a~~~v~~mcekLL 67 (83)
T COG1828 10 LKPGVLDPEGETIEKALHRLGYNEVSDVRVG---------KVIELELDAESEEKAEEEVKEMCEKLL 67 (83)
T ss_pred eCCcccCchhHHHHHHHHHcCCcccceeeee---------eEEEEEecCcchhHHHHHHHHHHHHHh
Confidence 345555 4789999999988 9888887 2322444333333333 256777654
No 325
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=20.12 E-value=1.6e+02 Score=23.27 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=27.8
Q ss_pred CCCeEEEEEEe---cCCccHHHHHHHHHHHCCceEEE
Q 024865 91 SPGHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSY 124 (261)
Q Consensus 91 ~~~~t~l~V~~---~DrpGLla~I~~vl~~~~l~I~~ 124 (261)
+.+...+.+.. -|-+|+++.|.+.|++.|+.|.-
T Consensus 60 ~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFa 96 (128)
T COG3603 60 EKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFA 96 (128)
T ss_pred cCCeEEEEEeccccCCcchhhhhhhhhHhhCCccEEE
Confidence 34666666654 58899999999999999999983
No 326
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=20.02 E-value=1.8e+02 Score=27.75 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=28.0
Q ss_pred CCeEEEEEEe---cCCccHHHHHHHHHHHCCceEEE
Q 024865 92 PGHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSY 124 (261)
Q Consensus 92 ~~~t~l~V~~---~DrpGLla~I~~vl~~~~l~I~~ 124 (261)
.+.+.|.|.+ .+.||+++++..+|..+|+||..
T Consensus 376 ~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~ 411 (441)
T TIGR00657 376 KGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEM 411 (441)
T ss_pred CCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEE
Confidence 3567788864 58899999999999999999973
Done!