BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024866
(261 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MMO|G Chain G, Crystal Structure Of A Bacterial Non-Haem Iron Hydroxylase
That Catalyses The Biological Oxidation Of Methane
pdb|1MMO|H Chain H, Crystal Structure Of A Bacterial Non-Haem Iron Hydroxylase
That Catalyses The Biological Oxidation Of Methane
pdb|1MTY|G Chain G, Methane Monooxygenase Hydroxylase From Methylococcus
Capsulatus (Bath)
pdb|1MTY|H Chain H, Methane Monooxygenase Hydroxylase From Methylococcus
Capsulatus (Bath)
Length = 162
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 18/114 (15%)
Query: 155 MEEIISVGKIAETPEM-----MGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAV 209
+ +I V + + EM M H +PF N LD D L W +K+AV
Sbjct: 13 VNKIAHVNTLEKAAEMLKQFRMDHTTPFRNSYELDNDYL-------WIEAKLE--EKVAV 63
Query: 210 LMCDQLRKPPLDSNSA--KERKFVIRGYTGWWN--RLQWEAEATQIAFRSCFQP 259
L + +A ++ K V+ G N + +WEAE I FR ++P
Sbjct: 64 LKARAFNEVDFRHKTAFGEDAKSVLDGTVAKMNAAKDKWEAEKIHIGFRQAYKP 117
>pdb|1XMF|E Chain E, Structure Of Mn(Ii)-Soaked Apo Methane Monooxygenase
Hydroxylase Crystals From M. Capsulatus (Bath)
pdb|1XMF|F Chain F, Structure Of Mn(Ii)-Soaked Apo Methane Monooxygenase
Hydroxylase Crystals From M. Capsulatus (Bath)
pdb|1XMG|E Chain E, Crystal Structure Of Apo Methane Monooxygenase Hydroxylase
From M. Capsulatus (Bath)
pdb|1XMG|F Chain F, Crystal Structure Of Apo Methane Monooxygenase Hydroxylase
From M. Capsulatus (Bath)
pdb|1XMH|E Chain E, Structure Of Co(Ii) Reconstituted Methane Monooxygenase
Hydroxylase From M. Capsulatus (Bath)
pdb|1XMH|F Chain F, Structure Of Co(Ii) Reconstituted Methane Monooxygenase
Hydroxylase From M. Capsulatus (Bath)
Length = 169
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
Query: 171 MGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSA--KER 228
M H +PF N LD D L W +K+AVL + +A ++
Sbjct: 36 MDHTTPFRNSYELDNDYL-------WIEAKLE--EKVAVLKARAFNEVDFRHKTAFGEDA 86
Query: 229 KFVIRGYTGWWN--RLQWEAEATQIAFRSCFQP 259
K V+ G N + +WEAE I FR ++P
Sbjct: 87 KSVLDGTVAKMNAAKDKWEAEKIHIGFRQAYKP 119
>pdb|1FZ4|E Chain E, Methane Monooxygenase Hydroxylase, Form Iii Soaked At Ph
8.5 (0.1 M Tris)
pdb|1FZ4|F Chain F, Methane Monooxygenase Hydroxylase, Form Iii Soaked At Ph
8.5 (0.1 M Tris)
pdb|1FZ5|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Crystallized
Anaerobically From Reduced Enzyme
pdb|1FZ5|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Crystallized
Anaerobically From Reduced Enzyme
pdb|1FZ7|E Chain E, Methane Monooxygenase Hydroxylase, Form Iii Soaked In 0.9
M Ethanol
pdb|1FZ7|F Chain F, Methane Monooxygenase Hydroxylase, Form Iii Soaked In 0.9
M Ethanol
pdb|1FYZ|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Reduced By
Soaking
pdb|1FYZ|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Reduced By
Soaking
pdb|1FZ0|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Grown Anaerobically
pdb|1FZ0|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Grown Anaerobically
pdb|1FZ1|E Chain E, Methane Monooxygenase Hydroxylase, Form Iii Oxidized
pdb|1FZ1|F Chain F, Methane Monooxygenase Hydroxylase, Form Iii Oxidized
pdb|1FZ2|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Generated By Crystal Soaking
pdb|1FZ2|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Generated By Crystal Soaking
pdb|1FZ3|E Chain E, Methane Monooxygenase Hydroxylase, Form Iii Soak At Ph 6.2
(0.1 M Pipes)
pdb|1FZ3|F Chain F, Methane Monooxygenase Hydroxylase, Form Iii Soak At Ph 6.2
(0.1 M Pipes)
pdb|1FZ6|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Soaked In 1 M
Methanol
pdb|1FZ6|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Soaked In 1 M
Methanol
pdb|1FZ8|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Dibromomethane
pdb|1FZ8|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Dibromomethane
pdb|1FZ9|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Iodoethane
pdb|1FZ9|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Iodoethane
pdb|1FZH|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Pressurized
With Xenon Gas
pdb|1FZH|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Pressurized
With Xenon Gas
pdb|1FZI|E Chain E, Methane Monooxygenase Hydroxylase, Form I Pressurized With
Xenon Gas
pdb|1FZI|F Chain F, Methane Monooxygenase Hydroxylase, Form I Pressurized With
Xenon Gas
pdb|1XU5|E Chain E, Soluble Methane Monooxygenase Hydroxylase-phenol Soaked
pdb|1XU5|F Chain F, Soluble Methane Monooxygenase Hydroxylase-phenol Soaked
pdb|1XVB|E Chain E, Soluble Methane Monooxygenase Hydroxylase: 6-Bromohexanol
Soaked Structure
pdb|1XVB|F Chain F, Soluble Methane Monooxygenase Hydroxylase: 6-Bromohexanol
Soaked Structure
pdb|1XVC|E Chain E, Soluble Methane Monooxygenase Hydroxylase: 8-Bromooctanol
Soaked Structure
pdb|1XVC|F Chain F, Soluble Methane Monooxygenase Hydroxylase: 8-Bromooctanol
Soaked Structure
pdb|1XVD|E Chain E, Soluble Methane Monooxygenase Hydroxylase: 4-Fluorophenol
Soaked Structure
pdb|1XVD|F Chain F, Soluble Methane Monooxygenase Hydroxylase: 4-Fluorophenol
Soaked Structure
pdb|1XVE|E Chain E, Soluble Methane Monooxygenase Hydroxylase: 3-bromo-3-
Butenol Soaked Structure
pdb|1XVE|F Chain F, Soluble Methane Monooxygenase Hydroxylase: 3-bromo-3-
Butenol Soaked Structure
pdb|1XVF|E Chain E, Soluble Methane Monooxygenase Hydroxylase: Chloropropanol
Soaked Structure
pdb|1XVF|F Chain F, Soluble Methane Monooxygenase Hydroxylase: Chloropropanol
Soaked Structure
pdb|1XVG|E Chain E, Soluble Methane Monooxygenase Hydroxylase: Bromoethanol
Soaked Structure
pdb|1XVG|F Chain F, Soluble Methane Monooxygenase Hydroxylase: Bromoethanol
Soaked Structure
pdb|1XU3|E Chain E, Soluble Methane Monooxygenase Hydroxylase-Soaked With
Bromophenol
pdb|1XU3|F Chain F, Soluble Methane Monooxygenase Hydroxylase-Soaked With
Bromophenol
pdb|4GAM|C Chain C, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
pdb|4GAM|H Chain H, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
pdb|4GAM|M Chain M, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
pdb|4GAM|R Chain R, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
Length = 170
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
Query: 171 MGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSA--KER 228
M H +PF N LD D L W +K+AVL + +A ++
Sbjct: 37 MDHTTPFRNSYELDNDYL-------WIEAKLE--EKVAVLKARAFNEVDFRHKTAFGEDA 87
Query: 229 KFVIRGYTGWWN--RLQWEAEATQIAFRSCFQP 259
K V+ G N + +WEAE I FR ++P
Sbjct: 88 KSVLDGTVAKMNAAKDKWEAEKIHIGFRQAYKP 120
>pdb|1OID|A Chain A, 5'-nucleotidase (e. Coli) With An Engineered Disulfide
Bridge (s228c, P513c)
pdb|1OID|B Chain B, 5'-nucleotidase (e. Coli) With An Engineered Disulfide
Bridge (s228c, P513c)
pdb|1OIE|A Chain A, 5'-Nucleotidase (E. Coli) With An Engineered Disulfide
Bridge (S228c, P513c)
Length = 532
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 131 KLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFEN 179
++K V + + NLK ++ G E ++ +IAE +M+ +SPF+N
Sbjct: 281 EMKMVNYQLIPVNLKKKVTWEDGKSERVLYTPEIAENQQMISLLSPFQN 329
>pdb|1HO5|A Chain A, 5'-Nucleotidase (E. Coli) In Complex With Adenosine And
Phosphate
pdb|1HO5|B Chain B, 5'-Nucleotidase (E. Coli) In Complex With Adenosine And
Phosphate
pdb|1HPU|A Chain A, 5'-Nucleotidase (Closed Form), Complex With Ampcp
pdb|1HPU|B Chain B, 5'-Nucleotidase (Closed Form), Complex With Ampcp
pdb|1HPU|C Chain C, 5'-Nucleotidase (Closed Form), Complex With Ampcp
pdb|1HPU|D Chain D, 5'-Nucleotidase (Closed Form), Complex With Ampcp
Length = 525
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 131 KLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFEN 179
++K V + + NLK ++ G E ++ +IAE +M+ +SPF+N
Sbjct: 281 EMKMVNYQLIPVNLKKKVTWEDGKSERVLYTPEIAENQQMISLLSPFQN 329
>pdb|2USH|A Chain A, 5'-Nucleotidase From E. Coli
pdb|2USH|B Chain B, 5'-Nucleotidase From E. Coli
pdb|1USH|A Chain A, 5'-Nucleotidase From E. Coli
Length = 550
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 131 KLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFEN 179
++K V + + NLK ++ G E ++ +IAE +M+ +SPF+N
Sbjct: 306 EMKMVNYQLIPVNLKKKVTWEDGKSERVLYTPEIAENQQMISLLSPFQN 354
>pdb|1OI8|A Chain A, 5'-Nucleotidase (E. Coli) With An Engineered Disulfide
Bridge (P90c, L424c)
pdb|1OI8|B Chain B, 5'-Nucleotidase (E. Coli) With An Engineered Disulfide
Bridge (P90c, L424c)
Length = 532
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 131 KLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFEN 179
++K V + + NLK ++ G E ++ +IAE +M+ +SPF+N
Sbjct: 281 EMKMVNYQLIPVNLKKKVTWEDGKSERVLYTPEIAENQQMISLLSPFQN 329
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 66 LRLVRDTPSIIDATAFADLNHLNELYIFKG----------IELEELKIDYTEIVRKRREP 115
L L+ + S I AFA L L LY+ K L+EL++ EI + R+
Sbjct: 81 LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKS- 139
Query: 116 FVFRSLHRVIIGE 128
VF L+++I+ E
Sbjct: 140 -VFNGLNQMIVVE 151
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 66 LRLVRDTPSIIDATAFADLNHLNELYIFKG----------IELEELKIDYTEIVRKRREP 115
L L+ + S I AFA L L LY+ K L+EL++ EI + R+
Sbjct: 81 LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKS- 139
Query: 116 FVFRSLHRVIIGE 128
VF L+++I+ E
Sbjct: 140 -VFNGLNQMIVVE 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,490,941
Number of Sequences: 62578
Number of extensions: 234048
Number of successful extensions: 697
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 690
Number of HSP's gapped (non-prelim): 10
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)