Query 024866
Match_columns 261
No_of_seqs 140 out of 1786
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 08:00:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024866.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024866hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.4 5.7E-13 1.2E-17 136.2 10.7 105 116-220 799-911 (1153)
2 KOG4658 Apoptotic ATPase [Sign 99.4 2.2E-13 4.8E-18 134.4 4.4 235 10-253 641-883 (889)
3 PLN03210 Resistant to P. syrin 99.3 5.7E-12 1.2E-16 129.0 11.5 49 171-220 795-843 (1153)
4 PLN00113 leucine-rich repeat r 98.7 2.6E-08 5.7E-13 100.7 8.2 44 176-219 306-349 (968)
5 PLN00113 leucine-rich repeat r 98.6 1.2E-07 2.6E-12 95.9 9.1 48 172-219 326-373 (968)
6 KOG4658 Apoptotic ATPase [Sign 98.4 6.2E-08 1.3E-12 96.3 0.4 88 2-94 562-651 (889)
7 KOG2120 SCF ubiquitin ligase, 98.3 3.2E-08 6.9E-13 85.2 -4.4 178 14-214 188-375 (419)
8 PRK15386 type III secretion pr 97.6 0.00034 7.3E-09 63.9 9.2 32 178-212 156-187 (426)
9 PF14580 LRR_9: Leucine-rich r 97.5 6.2E-05 1.3E-09 61.0 2.2 102 60-189 20-124 (175)
10 cd00116 LRR_RI Leucine-rich re 97.3 0.0001 2.2E-09 64.7 1.6 37 58-96 80-119 (319)
11 KOG4194 Membrane glycoprotein 97.3 2E-05 4.2E-10 73.8 -3.1 64 140-213 363-427 (873)
12 PRK15386 type III secretion pr 97.3 0.00055 1.2E-08 62.5 5.9 93 80-211 47-141 (426)
13 PRK15370 E3 ubiquitin-protein 97.3 0.00065 1.4E-08 67.0 6.9 10 120-129 284-293 (754)
14 PF14580 LRR_9: Leucine-rich r 97.2 0.00033 7.2E-09 56.8 3.9 109 80-215 14-126 (175)
15 PRK15370 E3 ubiquitin-protein 97.2 0.00083 1.8E-08 66.2 7.0 38 118-158 261-298 (754)
16 PF13855 LRR_8: Leucine rich r 97.2 0.00084 1.8E-08 44.3 4.8 36 176-212 23-59 (61)
17 KOG4341 F-box protein containi 97.1 5.3E-05 1.1E-09 68.2 -2.0 91 117-217 318-416 (483)
18 KOG3207 Beta-tubulin folding c 97.1 0.00044 9.6E-09 62.7 3.3 153 27-187 140-310 (505)
19 PF13855 LRR_8: Leucine rich r 97.0 0.002 4.4E-08 42.4 5.4 58 60-129 2-59 (61)
20 cd00116 LRR_RI Leucine-rich re 97.0 0.00032 6.8E-09 61.6 1.6 171 26-213 74-261 (319)
21 KOG3665 ZYG-1-like serine/thre 97.0 0.00022 4.7E-09 69.6 0.5 130 60-211 123-259 (699)
22 PRK15387 E3 ubiquitin-protein 96.8 0.005 1.1E-07 60.9 8.6 38 178-220 382-419 (788)
23 KOG1947 Leucine rich repeat pr 96.8 0.0001 2.2E-09 68.2 -3.5 40 117-156 267-309 (482)
24 PRK15387 E3 ubiquitin-protein 96.6 0.0064 1.4E-07 60.2 7.2 36 118-157 281-316 (788)
25 KOG4194 Membrane glycoprotein 96.2 0.005 1.1E-07 58.1 4.1 74 16-94 83-158 (873)
26 KOG0444 Cytoskeletal regulator 96.2 0.00043 9.3E-09 65.7 -2.9 50 170-220 331-380 (1255)
27 KOG2120 SCF ubiquitin ligase, 96.2 0.00069 1.5E-08 58.9 -1.6 145 22-189 223-374 (419)
28 KOG1947 Leucine rich repeat pr 96.1 0.00045 9.7E-09 63.9 -3.4 117 27-152 208-331 (482)
29 PF12799 LRR_4: Leucine Rich r 96.0 0.0078 1.7E-07 37.1 2.9 33 119-152 1-34 (44)
30 KOG4341 F-box protein containi 95.9 0.0018 4E-08 58.5 -0.3 146 59-219 294-443 (483)
31 KOG1259 Nischarin, modulator o 95.9 0.0014 2.9E-08 57.2 -1.3 135 25-189 276-410 (490)
32 KOG3864 Uncharacterized conser 95.8 0.00092 2E-08 54.9 -2.5 67 116-193 122-191 (221)
33 KOG3665 ZYG-1-like serine/thre 95.7 0.0071 1.5E-07 59.2 2.9 162 33-216 122-289 (699)
34 KOG0617 Ras suppressor protein 95.7 0.0016 3.5E-08 52.5 -1.5 144 60-221 34-191 (264)
35 KOG3207 Beta-tubulin folding c 95.4 0.0067 1.4E-07 55.3 1.3 37 116-153 194-233 (505)
36 KOG0444 Cytoskeletal regulator 95.3 0.0014 3.1E-08 62.3 -3.2 41 170-211 237-277 (1255)
37 KOG3864 Uncharacterized conser 94.7 0.007 1.5E-07 49.8 -0.6 68 58-135 124-192 (221)
38 PF12799 LRR_4: Leucine Rich r 94.4 0.039 8.5E-07 33.9 2.5 39 142-194 1-39 (44)
39 KOG0472 Leucine-rich repeat pr 94.1 0.013 2.7E-07 53.2 -0.4 95 116-213 432-539 (565)
40 KOG0617 Ras suppressor protein 93.5 0.015 3.2E-07 47.0 -0.8 84 113-211 50-136 (264)
41 PF13504 LRR_7: Leucine rich r 93.4 0.049 1.1E-06 26.3 1.2 17 202-219 1-17 (17)
42 KOG0618 Serine/threonine phosp 92.8 0.032 7E-07 55.3 0.1 20 138-158 448-467 (1081)
43 PLN03150 hypothetical protein; 91.5 0.52 1.1E-05 45.9 6.7 91 115-218 438-531 (623)
44 PLN03150 hypothetical protein; 90.7 0.4 8.6E-06 46.7 5.0 86 121-220 420-508 (623)
45 COG4886 Leucine-rich repeat (L 90.7 0.24 5.3E-06 45.0 3.4 135 60-211 141-286 (394)
46 KOG1859 Leucine-rich repeat pr 89.6 0.064 1.4E-06 52.2 -1.4 35 116-151 184-218 (1096)
47 KOG2123 Uncharacterized conser 89.2 0.027 5.9E-07 48.8 -3.7 17 174-190 84-100 (388)
48 COG4886 Leucine-rich repeat (L 88.0 0.5 1.1E-05 42.9 3.4 39 136-188 249-287 (394)
49 PF13306 LRR_5: Leucine rich r 87.6 4 8.7E-05 30.2 7.7 10 118-127 34-43 (129)
50 KOG1259 Nischarin, modulator o 86.7 0.16 3.4E-06 44.7 -0.7 52 13-68 286-338 (490)
51 KOG1644 U2-associated snRNP A' 86.5 1.3 2.8E-05 36.9 4.5 35 117-151 86-122 (233)
52 KOG0618 Serine/threonine phosp 85.8 0.15 3.3E-06 50.8 -1.3 21 22-42 372-392 (1081)
53 smart00367 LRR_CC Leucine-rich 85.1 0.58 1.3E-05 25.0 1.4 17 201-217 1-17 (26)
54 KOG2982 Uncharacterized conser 84.8 0.3 6.5E-06 42.9 0.2 14 140-153 197-210 (418)
55 KOG2739 Leucine-rich acidic nu 82.9 0.69 1.5E-05 39.6 1.5 134 61-218 20-159 (260)
56 KOG2739 Leucine-rich acidic nu 82.7 0.3 6.5E-06 41.8 -0.7 90 58-157 64-158 (260)
57 KOG0472 Leucine-rich repeat pr 82.1 0.3 6.4E-06 44.6 -1.0 36 116-152 502-538 (565)
58 PF00560 LRR_1: Leucine Rich R 81.5 0.67 1.5E-05 23.7 0.6 18 203-221 1-18 (22)
59 KOG1909 Ran GTPase-activating 80.7 0.89 1.9E-05 40.7 1.5 12 201-212 297-308 (382)
60 KOG2982 Uncharacterized conser 74.6 1.5 3.3E-05 38.7 1.1 62 79-151 91-155 (418)
61 KOG0531 Protein phosphatase 1, 72.5 2.2 4.7E-05 39.3 1.8 77 59-152 95-172 (414)
62 KOG2123 Uncharacterized conser 70.3 0.36 7.8E-06 42.1 -3.6 28 23-50 31-58 (388)
63 KOG1909 Ran GTPase-activating 69.3 2.4 5.1E-05 38.0 1.2 123 25-153 177-309 (382)
64 KOG1644 U2-associated snRNP A' 68.8 4.2 9.1E-05 33.9 2.4 123 14-153 22-151 (233)
65 KOG1859 Leucine-rich repeat pr 63.7 0.85 1.8E-05 44.8 -2.8 79 8-93 184-262 (1096)
66 PF13306 LRR_5: Leucine rich r 61.4 36 0.00078 24.9 6.3 10 141-150 34-43 (129)
67 KOG0531 Protein phosphatase 1, 54.5 4.1 8.9E-05 37.4 -0.0 26 16-41 100-126 (414)
68 PF13516 LRR_6: Leucine Rich r 53.8 8 0.00017 19.8 1.1 13 141-153 1-13 (24)
69 smart00369 LRR_TYP Leucine-ric 52.7 9.6 0.00021 19.9 1.3 19 202-221 2-20 (26)
70 smart00370 LRR Leucine-rich re 52.7 9.6 0.00021 19.9 1.3 19 202-221 2-20 (26)
71 KOG0532 Leucine-rich repeat (L 33.0 4.1 9E-05 39.0 -3.5 41 171-212 227-270 (722)
72 KOG4237 Extracellular matrix p 32.8 15 0.00032 33.8 0.1 34 116-150 319-354 (498)
73 KOG4237 Extracellular matrix p 20.2 36 0.00078 31.5 0.1 40 60-102 68-107 (498)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.43 E-value=5.7e-13 Score=136.25 Aligned_cols=105 Identities=20% Similarity=0.302 Sum_probs=75.4
Q ss_pred cCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEeccccccccccccc--------ccccCcccCCcccCCcccEEeccC
Q 024866 116 FVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGK--------IAETPEMMGHISPFENLQSLDLDD 187 (261)
Q Consensus 116 ~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~--------~~~~~~~~~~~~~~p~L~~L~L~~ 187 (261)
+.+++|+.|+|.+|..++.++....+++|++|++++|..+..++.... ....+.+|.++..+++|+.|++.+
T Consensus 799 ~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 799 QNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred hCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCC
Confidence 456667777777777666665444577777777777777665432110 011124556677889999999999
Q ss_pred CcccccccCCCccCCccceeeeccCccCCCCCC
Q 024866 188 LPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPL 220 (261)
Q Consensus 188 ~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~ 220 (261)
|++|+.++.....+++|+.+.+.+|++|+.++.
T Consensus 879 C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 879 CNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred CCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 999999987777889999999999999987764
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.38 E-value=2.2e-13 Score=134.41 Aligned_cols=235 Identities=32% Similarity=0.467 Sum_probs=178.7
Q ss_pred eeccccccccCC----CcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccC
Q 024866 10 HEASEESVLFGG----GEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLN 85 (261)
Q Consensus 10 ~~~~~~~~~~~~----~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~ 85 (261)
|..+++..+... +...++++++|++|+.++++..+..-++.+....++.++.+.+.+.+|..-... +++..+.
T Consensus 641 L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~---~~~~~l~ 717 (889)
T KOG4658|consen 641 LQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLI---SSLGSLG 717 (889)
T ss_pred cccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceee---ccccccc
Confidence 555666666555 488999999999999999988776556677777777777777777554332222 5788999
Q ss_pred CCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEeccccccccccccccc
Q 024866 86 HLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIA 165 (261)
Q Consensus 86 ~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~ 165 (261)
+|+.|.|.+|...+... +.... ......|+++..+.+.+|...++++|....|+|+.|.+.+|+.+++++......
T Consensus 718 ~L~~L~i~~~~~~e~~~-~~~~~---~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~ 793 (889)
T KOG4658|consen 718 NLEELSILDCGISEIVI-EWEES---LIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKAL 793 (889)
T ss_pred CcceEEEEcCCCchhhc-ccccc---cchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHh
Confidence 99999999999876432 11110 011013789999999999999999999999999999999999999998755433
Q ss_pred ccCcccCCcccCCcccEE-eccCCcccccccCCCccCCccceeeeccCccCCCCCCCCcccc---CCceEEEcchhhhhh
Q 024866 166 ETPEMMGHISPFENLQSL-DLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAK---ERKFVIRGYTGWWNR 241 (261)
Q Consensus 166 ~~~~~~~~~~~~p~L~~L-~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~---~~l~~~~~~~~ww~~ 241 (261)
.. .......|.++..+ .+.+.+.++.+...+..++.|+.+.|..||+++.+|....+.. ........+.+|=+.
T Consensus 794 ~~--l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~ 871 (889)
T KOG4658|consen 794 LE--LKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEG 871 (889)
T ss_pred hh--cccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceee
Confidence 21 11235678888888 6899999999988888899999999999999999998765532 233444457778888
Q ss_pred cccCchhhhccc
Q 024866 242 LQWEAEATQIAF 253 (261)
Q Consensus 242 ~~w~~~~~~~~~ 253 (261)
++|++++++..+
T Consensus 872 v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 872 VYWEDELTKLRF 883 (889)
T ss_pred EEehhhhhhhhc
Confidence 999999998877
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.34 E-value=5.7e-12 Score=129.00 Aligned_cols=49 Identities=18% Similarity=0.319 Sum_probs=35.4
Q ss_pred cCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCC
Q 024866 171 MGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPL 220 (261)
Q Consensus 171 ~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~ 220 (261)
|..+..+++|+.|++.+|.+|+.++... .+++|+.|.+++|.+++.+|.
T Consensus 795 P~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 795 PSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred ChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc
Confidence 4445567778888888888887776533 577888888888887777664
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.73 E-value=2.6e-08 Score=100.68 Aligned_cols=44 Identities=16% Similarity=0.088 Sum_probs=21.6
Q ss_pred cCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCC
Q 024866 176 PFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPP 219 (261)
Q Consensus 176 ~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp 219 (261)
.+++|+.|++.++.--..++.....+++|+.|.+++|.--..+|
T Consensus 306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC
Confidence 34455555554443222222223346667777776665444455
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.62 E-value=1.2e-07 Score=95.90 Aligned_cols=48 Identities=15% Similarity=0.031 Sum_probs=33.9
Q ss_pred CCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCC
Q 024866 172 GHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPP 219 (261)
Q Consensus 172 ~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp 219 (261)
..+..+++|+.|++.++.--..++.....+++|+.|++++|.--..+|
T Consensus 326 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 326 VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence 345678899999998876434454445567899999998886544444
No 6
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.40 E-value=6.2e-08 Score=96.26 Aligned_cols=88 Identities=19% Similarity=0.071 Sum_probs=62.0
Q ss_pred cceeeeEeeeccccccccCC--CcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccc
Q 024866 2 FAIGWFNFHEASEESVLFGG--GEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDAT 79 (261)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~--~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~ 79 (261)
.+.+||..||..++.|+++. .....+.+..|-+|++|++...+.. .++.....++.|.+|++.....+..++ -
T Consensus 562 is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~---~LP~~l~~Lk~L~~Lnl~~~~~l~~~~--~ 636 (889)
T KOG4658|consen 562 ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS---HLPSGLGNLKKLIYLNLEVTGRLESIP--G 636 (889)
T ss_pred cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc---ccchHHHHHHhhheecccccccccccc--c
Confidence 46789999999999999964 2556677777888889988865543 444444445577888888776655552 2
Q ss_pred cccccCCCCeEEEec
Q 024866 80 AFADLNHLNELYIFK 94 (261)
Q Consensus 80 ~l~~l~~L~~L~i~~ 94 (261)
....+++|++|.+..
T Consensus 637 i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 637 ILLELQSLRVLRLPR 651 (889)
T ss_pred hhhhcccccEEEeec
Confidence 234477888887764
No 7
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=3.2e-08 Score=85.17 Aligned_cols=178 Identities=16% Similarity=0.083 Sum_probs=115.6
Q ss_pred ccccccCCCcc---hhhhhhcccCCceEEEEEcch--HHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCC
Q 024866 14 EESVLFGGGEV---LVQELLGLKYLEVLELTLGSY--QALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLN 88 (261)
Q Consensus 14 ~~~~~~~~~~~---~l~eL~~L~~L~~L~i~~~~~--~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~ 88 (261)
.++|++.+... ...-|.+.++|+.|++..-.. .-...+.+. ++|+.|+|+.|++++.-.+.-.+.++..|.
T Consensus 188 q~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN----~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 188 QHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN----SNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred HHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcc----ccceeeccccccccchhHHHHHHHhhhhHh
Confidence 45666666432 223344456777776664321 112223332 478999999999988776545678899999
Q ss_pred eEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCC---C-ccccCCCCcEEEEecccccccccccccc
Q 024866 89 ELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDV---T-FLVFAPNLKSLRLFDCGAMEEIISVGKI 164 (261)
Q Consensus 89 ~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l---~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~ 164 (261)
+|++++|..-....- . ... .--++|+.|+++||.+.-.. . ....+|+|..|++++|..++.-..
T Consensus 264 ~LNlsWc~l~~~~Vt-v-----~V~--hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~---- 331 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVT-V-----AVA--HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF---- 331 (419)
T ss_pred hcCchHhhccchhhh-H-----HHh--hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH----
Confidence 999999975433210 0 000 12248889999998754322 1 225699999999999998875211
Q ss_pred cccCcccCCcccCCcccEEeccCCcccccc-cCCCccCCccceeeeccCcc
Q 024866 165 AETPEMMGHISPFENLQSLDLDDLPHLKSI-FWKPLPFTHLKKMAVLMCDQ 214 (261)
Q Consensus 165 ~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i-~~~~~~~p~L~~L~i~~C~~ 214 (261)
..+..|+.|++|.++.|..+-.- .......|+|.+|+|.+|-.
T Consensus 332 -------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 332 -------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred -------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 13456999999999999876321 11244689999999999843
No 8
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.62 E-value=0.00034 Score=63.86 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=20.6
Q ss_pred CcccEEeccCCcccccccCCCccCCccceeeeccC
Q 024866 178 ENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMC 212 (261)
Q Consensus 178 p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C 212 (261)
++|+.|.+.+|..+. ++. .. -++|+.|++..+
T Consensus 156 sSLk~L~Is~c~~i~-LP~-~L-P~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LPE-KL-PESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-Ccc-cc-cccCcEEEeccc
Confidence 468888888887553 221 11 158888888664
No 9
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.47 E-value=6.2e-05 Score=61.03 Aligned_cols=102 Identities=21% Similarity=0.301 Sum_probs=27.1
Q ss_pred ceeEEEEcCCCCCCccccccccc-ccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC-c
Q 024866 60 CIRSLQLRLVRDTPSIIDATAFA-DLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT-F 137 (261)
Q Consensus 60 ~L~~L~L~~c~~l~~l~~~~~l~-~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~-~ 137 (261)
.++.|+|.++ .+..+ ..++ .+.+|+.|+++++. ++.| .....+++|+.|.+++- +++++. .
T Consensus 20 ~~~~L~L~~n-~I~~I---e~L~~~l~~L~~L~Ls~N~-I~~l-----------~~l~~L~~L~~L~L~~N-~I~~i~~~ 82 (175)
T PF14580_consen 20 KLRELNLRGN-QISTI---ENLGATLDKLEVLDLSNNQ-ITKL-----------EGLPGLPRLKTLDLSNN-RISSISEG 82 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S-------------TT----TT--EEE--SS----S-CHH
T ss_pred cccccccccc-ccccc---cchhhhhcCCCEEECCCCC-Cccc-----------cCccChhhhhhcccCCC-CCCccccc
Confidence 3556666654 22333 3344 35667777766654 2222 11234667777777653 566553 1
Q ss_pred c-ccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCc
Q 024866 138 L-VFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLP 189 (261)
Q Consensus 138 l-~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~ 189 (261)
+ ..+|+|++|++++- .+.++-.. ..+..+|+|+.|++.+-|
T Consensus 83 l~~~lp~L~~L~L~~N-~I~~l~~l----------~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNN-KISDLNEL----------EPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCCC----------GGGGG-TT--EEE-TT-G
T ss_pred hHHhCCcCCEEECcCC-cCCChHHh----------HHHHcCCCcceeeccCCc
Confidence 2 34677777777652 33322110 133457777777777665
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.29 E-value=0.0001 Score=64.69 Aligned_cols=37 Identities=19% Similarity=0.125 Sum_probs=17.4
Q ss_pred ccceeEEEEcCCCCCCccccccccccc---CCCCeEEEeccC
Q 024866 58 KSCIRSLQLRLVRDTPSIIDATAFADL---NHLNELYIFKGI 96 (261)
Q Consensus 58 ~~~L~~L~L~~c~~l~~l~~~~~l~~l---~~L~~L~i~~c~ 96 (261)
..+|+.|++++|.-..... ..+..+ ++|++|++++|.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~--~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 80 GCGLQELDLSDNALGPDGC--GVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred cCceeEEEccCCCCChhHH--HHHHHHhccCcccEEEeeCCc
Confidence 3456666666654321111 122222 336666666553
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.29 E-value=2e-05 Score=73.75 Aligned_cols=64 Identities=20% Similarity=0.120 Sum_probs=42.4
Q ss_pred cCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCC-ccCCccceeeeccCc
Q 024866 140 FAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKP-LPFTHLKKMAVLMCD 213 (261)
Q Consensus 140 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~-~~~p~L~~L~i~~C~ 213 (261)
.+.+|++|++++- .+...+.. +. ..+..+|+|++|.+.+ .+|+.|+... ..++.||+|++.+-+
T Consensus 363 ~lssL~~LdLr~N-~ls~~IED--aa------~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 363 GLSSLHKLDLRSN-ELSWCIED--AA------VAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred HhhhhhhhcCcCC-eEEEEEec--ch------hhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCc
Confidence 4677777777762 33333322 11 1345589999999988 5688887654 358999999886653
No 12
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.26 E-value=0.00055 Score=62.49 Aligned_cols=93 Identities=18% Similarity=0.360 Sum_probs=62.8
Q ss_pred cccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEeccccccccc
Q 024866 80 AFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEII 159 (261)
Q Consensus 80 ~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~ 159 (261)
.+..+.+++.|+|++| .|+.+ | ...++|+.|.+.+|..++.++. ...++|++|.|++|..+..++
T Consensus 47 r~~~~~~l~~L~Is~c-~L~sL-----------P--~LP~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 47 QIEEARASGRLYIKDC-DIESL-----------P--VLPNELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HHHHhcCCCEEEeCCC-CCccc-----------C--CCCCCCcEEEccCCCCcccCCc-hhhhhhhheEccCcccccccc
Confidence 3556789999999999 56554 2 2234799999999999877642 235699999999998765432
Q ss_pred ccccccccCcccCCcccCCcccEEeccC--CcccccccCCCccCCccceeeecc
Q 024866 160 SVGKIAETPEMMGHISPFENLQSLDLDD--LPHLKSIFWKPLPFTHLKKMAVLM 211 (261)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~p~L~~L~L~~--~~~L~~i~~~~~~~p~L~~L~i~~ 211 (261)
+.|+.|.+.. +..+..++ ++|+.|.+.+
T Consensus 112 ------------------~sLe~L~L~~n~~~~L~~LP------ssLk~L~I~~ 141 (426)
T PRK15386 112 ------------------ESVRSLEIKGSATDSIKNVP------NGLTSLSINS 141 (426)
T ss_pred ------------------cccceEEeCCCCCcccccCc------chHhheeccc
Confidence 2466666642 33344443 4677887744
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.26 E-value=0.00065 Score=66.97 Aligned_cols=10 Identities=10% Similarity=0.102 Sum_probs=4.9
Q ss_pred CCcEEEEecC
Q 024866 120 SLHRVIIGEC 129 (261)
Q Consensus 120 ~L~~L~l~~C 129 (261)
+|+.|+++++
T Consensus 284 sL~~L~Ls~N 293 (754)
T PRK15370 284 ELRYLSVYDN 293 (754)
T ss_pred CCcEEECCCC
Confidence 4555555444
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.24 E-value=0.00033 Score=56.78 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=36.3
Q ss_pred cccccCCCCeEEEeccCCcceEecccccccccCCCCc-CCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccc
Q 024866 80 AFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPF-VFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEI 158 (261)
Q Consensus 80 ~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~-~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i 158 (261)
.+.+...+++|+++|+. +..| ...+ .+.+|+.|+++++ +++++..+..+++|++|++++ +.++.+
T Consensus 14 ~~~n~~~~~~L~L~~n~-I~~I-----------e~L~~~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~-N~I~~i 79 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQ-ISTI-----------ENLGATLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSN-NRISSI 79 (175)
T ss_dssp ----------------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--S-S---S-
T ss_pred ccccccccccccccccc-cccc-----------cchhhhhcCCCEEECCCC-CCccccCccChhhhhhcccCC-CCCCcc
Confidence 34455578888888764 3322 1113 5789999999998 788887777899999999987 344443
Q ss_pred cccccccccCcccCCc-ccCCcccEEeccCC--cccccccCCCccCCccceeeeccCccC
Q 024866 159 ISVGKIAETPEMMGHI-SPFENLQSLDLDDL--PHLKSIFWKPLPFTHLKKMAVLMCDQL 215 (261)
Q Consensus 159 ~~~~~~~~~~~~~~~~-~~~p~L~~L~L~~~--~~L~~i~~~~~~~p~L~~L~i~~C~~L 215 (261)
.. .+ ..+|+|+.|++.+- .++..+. ....+|+|+.|++.+.|--
T Consensus 80 ~~------------~l~~~lp~L~~L~L~~N~I~~l~~l~-~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 80 SE------------GLDKNLPNLQELYLSNNKISDLNELE-PLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp CH------------HHHHH-TT--EEE-TTS---SCCCCG-GGGG-TT--EEE-TT-GGG
T ss_pred cc------------chHHhCCcCCEEECcCCcCCChHHhH-HHHcCCCcceeeccCCccc
Confidence 21 11 25899999999752 3333332 1336899999999887754
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.21 E-value=0.00083 Score=66.24 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=22.8
Q ss_pred CCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccc
Q 024866 118 FRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEI 158 (261)
Q Consensus 118 ~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i 158 (261)
.++|+.|+++++ +++.++. ...++|++|++++| +++.+
T Consensus 261 ~s~L~~L~Ls~N-~L~~LP~-~l~~sL~~L~Ls~N-~Lt~L 298 (754)
T PRK15370 261 PSALQSLDLFHN-KISCLPE-NLPEELRYLSVYDN-SIRTL 298 (754)
T ss_pred hCCCCEEECcCC-ccCcccc-ccCCCCcEEECCCC-ccccC
Confidence 347788877643 5665431 22357888888775 45443
No 16
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.18 E-value=0.00084 Score=44.31 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=16.8
Q ss_pred cCCcccEEeccCCcccccccCCC-ccCCccceeeeccC
Q 024866 176 PFENLQSLDLDDLPHLKSIFWKP-LPFTHLKKMAVLMC 212 (261)
Q Consensus 176 ~~p~L~~L~L~~~~~L~~i~~~~-~~~p~L~~L~i~~C 212 (261)
.+++|++|++.+ .+++.+..+. ..+++|++|.+++|
T Consensus 23 ~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 23 NLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred CCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 445555555553 2244444322 23555555555544
No 17
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.12 E-value=5.3e-05 Score=68.18 Aligned_cols=91 Identities=18% Similarity=0.296 Sum_probs=49.4
Q ss_pred CCCCCcEEEEecCCCCCCCCc--c-ccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccccc
Q 024866 117 VFRSLHRVIIGECHKLKDVTF--L-VFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKS 193 (261)
Q Consensus 117 ~~~~L~~L~l~~C~~l~~l~~--l-~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~ 193 (261)
..++|+.|.+.+|..+.+..+ + .+.++|+.|++.+|....+-. +.......|.|+.|.++.|...+.
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t----------L~sls~~C~~lr~lslshce~itD 387 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT----------LASLSRNCPRLRVLSLSHCELITD 387 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh----------HhhhccCCchhccCChhhhhhhhh
Confidence 446777777777776665421 2 345666666666665433210 001223456677777766655443
Q ss_pred c-----cCCCccCCccceeeeccCccCCC
Q 024866 194 I-----FWKPLPFTHLKKMAVLMCDQLRK 217 (261)
Q Consensus 194 i-----~~~~~~~p~L~~L~i~~C~~L~~ 217 (261)
- .....+...|+.+.+++||.++.
T Consensus 388 ~gi~~l~~~~c~~~~l~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 388 EGIRHLSSSSCSLEGLEVLELDNCPLITD 416 (483)
T ss_pred hhhhhhhhccccccccceeeecCCCCchH
Confidence 3 11233455666666666666554
No 18
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00044 Score=62.69 Aligned_cols=153 Identities=19% Similarity=0.243 Sum_probs=75.4
Q ss_pred hhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccC----------
Q 024866 27 QELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGI---------- 96 (261)
Q Consensus 27 ~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~---------- 96 (261)
...+.+.+++.|+++.-=-.+...+.+....+++|+.|+|+.- .+....-...-..+++|+.|.+++|.
T Consensus 140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~ 218 (505)
T KOG3207|consen 140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWIL 218 (505)
T ss_pred hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhhhhhheEEeccCCCCHHHHHHHH
Confidence 3566667777777764333334444444445567777777752 22211100111346677777777763
Q ss_pred ----CcceEeccccc-ccccCCCCcCCCCCcEEEEecCCCCCCC---CccccCCCCcEEEEecccccccccccccccccC
Q 024866 97 ----ELEELKIDYTE-IVRKRREPFVFRSLHRVIIGECHKLKDV---TFLVFAPNLKSLRLFDCGAMEEIISVGKIAETP 168 (261)
Q Consensus 97 ----~Le~l~~~~~~-~~~~~p~~~~~~~L~~L~l~~C~~l~~l---~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~ 168 (261)
+++.+.+.... ....-.+...+..|+.|+|++-+ +.++ +-.+.||.|.-|.+..|. +.++-.-. +.
T Consensus 219 ~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d-~~--- 292 (505)
T KOG3207|consen 219 LTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPD-VE--- 292 (505)
T ss_pred HhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhhccccC-cchhcCCC-cc---
Confidence 23332222110 00000112456677777777643 3332 234667888877777763 22221110 00
Q ss_pred cccCCcccCCcccEEeccC
Q 024866 169 EMMGHISPFENLQSLDLDD 187 (261)
Q Consensus 169 ~~~~~~~~~p~L~~L~L~~ 187 (261)
.-.....||+|+.|.+..
T Consensus 293 -s~~kt~~f~kL~~L~i~~ 310 (505)
T KOG3207|consen 293 -SLDKTHTFPKLEYLNISE 310 (505)
T ss_pred -chhhhcccccceeeeccc
Confidence 001235688888888754
No 19
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.01 E-value=0.002 Score=42.44 Aligned_cols=58 Identities=19% Similarity=0.174 Sum_probs=29.5
Q ss_pred ceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecC
Q 024866 60 CIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGEC 129 (261)
Q Consensus 60 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C 129 (261)
+|+.|+++++ +++.++. ..+..+++|+.|+++++. +..+..+. ...+++|++|+++++
T Consensus 2 ~L~~L~l~~n-~l~~i~~-~~f~~l~~L~~L~l~~N~-l~~i~~~~---------f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPP-DSFSNLPNLETLDLSNNN-LTSIPPDA---------FSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECT-TTTTTGTTESEEEETSSS-ESEEETTT---------TTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCH-HHHcCCCCCCEeEccCCc-cCccCHHH---------HcCCCCCCEEeCcCC
Confidence 4556666665 4555543 455566666666666332 34332111 134555566655554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.99 E-value=0.00032 Score=61.58 Aligned_cols=171 Identities=19% Similarity=0.145 Sum_probs=86.6
Q ss_pred hhhhhcccCCceEEEEEcchH--HHHHHhhCcccccceeEEEEcCCCCCC-ccc-cccccccc-CCCCeEEEeccCCcce
Q 024866 26 VQELLGLKYLEVLELTLGSYQ--ALQILLSSNKLKSCIRSLQLRLVRDTP-SII-DATAFADL-NHLNELYIFKGIELEE 100 (261)
Q Consensus 26 l~eL~~L~~L~~L~i~~~~~~--~l~~l~~~~~l~~~L~~L~L~~c~~l~-~l~-~~~~l~~l-~~L~~L~i~~c~~Le~ 100 (261)
...+..+.+|+.|++...... ....+...... ++|+.|++++|.-.. .+. +...+..+ ++|+.|++++|.- ..
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l-~~ 151 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRL-EG 151 (319)
T ss_pred HHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcC-Cc
Confidence 345666778888888754321 11112111111 458999999875321 111 11234566 8899999998862 10
Q ss_pred EecccccccccCCCCcCCCCCcEEEEecCCCCCCC--C----ccccCCCCcEEEEecccccccccccccccccCcccCCc
Q 024866 101 LKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDV--T----FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHI 174 (261)
Q Consensus 101 l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l--~----~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~ 174 (261)
-..... ......+++|+.|++.+| .+.+- . .+..+++|++|++++|. +...... .+...+
T Consensus 152 ~~~~~~-----~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~-------~l~~~~ 217 (319)
T cd00116 152 ASCEAL-----AKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGAS-------ALAETL 217 (319)
T ss_pred hHHHHH-----HHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHH-------HHHHHh
Confidence 000000 000123457888888776 34421 0 11234688888888773 2211100 011123
Q ss_pred ccCCcccEEeccCCcccccc-----cCC-CccCCccceeeeccCc
Q 024866 175 SPFENLQSLDLDDLPHLKSI-----FWK-PLPFTHLKKMAVLMCD 213 (261)
Q Consensus 175 ~~~p~L~~L~L~~~~~L~~i-----~~~-~~~~p~L~~L~i~~C~ 213 (261)
..+++|+.|++++++ +... ... ....+.|++|.+.+|.
T Consensus 218 ~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 218 ASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred cccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 346778888887764 3321 100 0023677888877773
No 21
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.97 E-value=0.00022 Score=69.63 Aligned_cols=130 Identities=12% Similarity=0.044 Sum_probs=72.1
Q ss_pred ceeEEEEcCCCCCCccccccccc-ccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCcc
Q 024866 60 CIRSLQLRLVRDTPSIIDATAFA-DLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFL 138 (261)
Q Consensus 60 ~L~~L~L~~c~~l~~l~~~~~l~-~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l 138 (261)
+|++|+|++-.....-.+ ..++ .+|+|+.|.|.|-. +..+... .-..+||+|..|+|+++ +++++..+
T Consensus 123 nL~~LdI~G~~~~s~~W~-~kig~~LPsL~sL~i~~~~----~~~~dF~-----~lc~sFpNL~sLDIS~T-nI~nl~GI 191 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWP-KKIGTMLPSLRSLVISGRQ----FDNDDFS-----QLCASFPNLRSLDISGT-NISNLSGI 191 (699)
T ss_pred hhhhcCccccchhhccHH-HHHhhhCcccceEEecCce----ecchhHH-----HHhhccCccceeecCCC-CccCcHHH
Confidence 577777776332211111 2233 57788888877632 1111000 00257899999999998 68888777
Q ss_pred ccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccc--c----CCCccCCccceeeecc
Q 024866 139 VFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSI--F----WKPLPFTHLKKMAVLM 211 (261)
Q Consensus 139 ~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i--~----~~~~~~p~L~~L~i~~ 211 (261)
+.++||+.|.+++..--.. ..- ..+..+.+|+.|+++.=.+...- . .....+|.|+.|+.++
T Consensus 192 S~LknLq~L~mrnLe~e~~----~~l-------~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLEFESY----QDL-------IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred hccccHHHHhccCCCCCch----hhH-------HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 8888888887776532210 000 02345677777777654433221 0 1233467777776653
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.83 E-value=0.005 Score=60.90 Aligned_cols=38 Identities=24% Similarity=0.205 Sum_probs=23.6
Q ss_pred CcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCC
Q 024866 178 ENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPL 220 (261)
Q Consensus 178 p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~ 220 (261)
++|+.|++.+. +++.++. ..++|+.|+++++. |+.+|.
T Consensus 382 ~~L~~LdLs~N-~Lt~LP~---l~s~L~~LdLS~N~-LssIP~ 419 (788)
T PRK15387 382 SGLKELIVSGN-RLTSLPV---LPSELKELMVSGNR-LTSLPM 419 (788)
T ss_pred cccceEEecCC-cccCCCC---cccCCCEEEccCCc-CCCCCc
Confidence 36777777664 3555543 23577888887763 566663
No 23
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.76 E-value=0.0001 Score=68.23 Aligned_cols=40 Identities=23% Similarity=0.445 Sum_probs=29.4
Q ss_pred CCCCCcEEEEecCCCCCCCCc---cccCCCCcEEEEecccccc
Q 024866 117 VFRSLHRVIIGECHKLKDVTF---LVFAPNLKSLRLFDCGAME 156 (261)
Q Consensus 117 ~~~~L~~L~l~~C~~l~~l~~---l~~lp~L~~L~i~~C~~L~ 156 (261)
.+++|+.|.+.+|..+++... ...+++|++|++++|..+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence 367888888888887665421 2467889999999888763
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.56 E-value=0.0064 Score=60.16 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=20.1
Q ss_pred CCCCcEEEEecCCCCCCCCccccCCCCcEEEEeccccccc
Q 024866 118 FRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEE 157 (261)
Q Consensus 118 ~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~ 157 (261)
+.+|+.|++.++ +++.++. .+++|++|+++++ .++.
T Consensus 281 p~~L~~L~Ls~N-~Lt~LP~--~p~~L~~LdLS~N-~L~~ 316 (788)
T PRK15387 281 PSGLCKLWIFGN-QLTSLPV--LPPGLQELSVSDN-QLAS 316 (788)
T ss_pred hhhcCEEECcCC-ccccccc--cccccceeECCCC-cccc
Confidence 345666666665 4554432 3466777777764 4444
No 25
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.23 E-value=0.005 Score=58.14 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=48.3
Q ss_pred ccccCCC--cchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEe
Q 024866 16 SVLFGGG--EVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIF 93 (261)
Q Consensus 16 ~~~~~~~--~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~ 93 (261)
.|++... ...+++..++.+|+.+++..-. +..++......++++.|.|.+ ..+.++.. +.++.++.|+.|+++
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~---Lt~IP~f~~~sghl~~L~L~~-N~I~sv~s-e~L~~l~alrslDLS 157 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE---LTRIPRFGHESGHLEKLDLRH-NLISSVTS-EELSALPALRSLDLS 157 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeeccch---hhhcccccccccceeEEeeec-cccccccH-HHHHhHhhhhhhhhh
Confidence 5666553 5566777888888888887433 344445555556788888876 34444533 556777788888776
Q ss_pred c
Q 024866 94 K 94 (261)
Q Consensus 94 ~ 94 (261)
.
T Consensus 158 r 158 (873)
T KOG4194|consen 158 R 158 (873)
T ss_pred h
Confidence 4
No 26
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.21 E-value=0.00043 Score=65.68 Aligned_cols=50 Identities=22% Similarity=0.189 Sum_probs=36.3
Q ss_pred ccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCC
Q 024866 170 MMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPL 220 (261)
Q Consensus 170 ~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~ 220 (261)
+|+++.-.++|+.|.|.+ ..|..++...--+|-|+.|+++.-|+|-.-|.
T Consensus 331 VPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 331 VPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred CchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 455666677788887754 45777776555678888888888888876664
No 27
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.00069 Score=58.92 Aligned_cols=145 Identities=19% Similarity=0.115 Sum_probs=93.5
Q ss_pred CcchhhhhhcccCCceEEEEEcchHH---HHHHhhCcccccceeEEEEcCCCCCCcccc--cccccccCCCCeEEEeccC
Q 024866 22 GEVLVQELLGLKYLEVLELTLGSYQA---LQILLSSNKLKSCIRSLQLRLVRDTPSIID--ATAFADLNHLNELYIFKGI 96 (261)
Q Consensus 22 ~~~~l~eL~~L~~L~~L~i~~~~~~~---l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~--~~~l~~l~~L~~L~i~~c~ 96 (261)
+.....++..=.+|+.|+++..++.. +..++.+ .+.|..|+|+.|......-. ...++ ++|+.|+++||.
T Consensus 223 dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~s---cs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~r 297 (419)
T KOG2120|consen 223 DDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSS---CSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYR 297 (419)
T ss_pred CcHHHHHHhccccceeeccccccccchhHHHHHHHh---hhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhH
Confidence 35566677777889999999776422 3334444 34788999999965443311 02233 689999999985
Q ss_pred CcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCC--CccccCCCCcEEEEecccccccccccccccccCcccCCc
Q 024866 97 ELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDV--TFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHI 174 (261)
Q Consensus 97 ~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l--~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~ 174 (261)
.- +....-. .. ....|+|.+|++++|-.+++= ..+-.++.|++|.++.|-.+ +... --.+
T Consensus 298 rn--l~~sh~~--tL---~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i---~p~~--------~~~l 359 (419)
T KOG2120|consen 298 RN--LQKSHLS--TL---VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI---IPET--------LLEL 359 (419)
T ss_pred hh--hhhhHHH--HH---HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC---ChHH--------eeee
Confidence 31 1111000 00 135789999999999888862 12346999999999999753 2111 0134
Q ss_pred ccCCcccEEeccCCc
Q 024866 175 SPFENLQSLDLDDLP 189 (261)
Q Consensus 175 ~~~p~L~~L~L~~~~ 189 (261)
...|.|.+|++.+|-
T Consensus 360 ~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 360 NSKPSLVYLDVFGCV 374 (419)
T ss_pred ccCcceEEEEecccc
Confidence 568999999998874
No 28
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.11 E-value=0.00045 Score=63.95 Aligned_cols=117 Identities=24% Similarity=0.202 Sum_probs=56.6
Q ss_pred hhhhcccCCceEEEEEc-ch-HH-HHHHhhCcccccceeEEEEcCCCCCCccccccccc-ccCCCCeEEEeccCCcceEe
Q 024866 27 QELLGLKYLEVLELTLG-SY-QA-LQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFA-DLNHLNELYIFKGIELEELK 102 (261)
Q Consensus 27 ~eL~~L~~L~~L~i~~~-~~-~~-l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~-~l~~L~~L~i~~c~~Le~l~ 102 (261)
.-.....+|+.|.+... .. .. ...........++++.|++..|..+....+ ..+. ..++|+.|.+.+|..+..-.
T Consensus 208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l-~~l~~~c~~L~~L~l~~c~~lt~~g 286 (482)
T KOG1947|consen 208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL-SALASRCPNLETLSLSNCSNLTDEG 286 (482)
T ss_pred HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH-HHHHhhCCCcceEccCCCCccchhH
Confidence 44445567777776531 10 00 000011122234667777777765555544 2222 35677777766776532211
Q ss_pred cccccccccCCCCcCCCCCcEEEEecCCCCCCCC---ccccCCCCcEEEEecc
Q 024866 103 IDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT---FLVFAPNLKSLRLFDC 152 (261)
Q Consensus 103 ~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~---~l~~lp~L~~L~i~~C 152 (261)
+... ...+++|++|++++|..+++-. ....+++|+.|.+.++
T Consensus 287 l~~i--------~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 287 LVSI--------AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred HHHH--------HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 1000 1345667777777777664421 1234555555544443
No 29
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.98 E-value=0.0078 Score=37.09 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=21.4
Q ss_pred CCCcEEEEecCCCCCCCCc-cccCCCCcEEEEecc
Q 024866 119 RSLHRVIIGECHKLKDVTF-LVFAPNLKSLRLFDC 152 (261)
Q Consensus 119 ~~L~~L~l~~C~~l~~l~~-l~~lp~L~~L~i~~C 152 (261)
++|++|+++++ ++++++. +..+++|++|+++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence 36677777766 5666665 667777777777776
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.89 E-value=0.0018 Score=58.50 Aligned_cols=146 Identities=16% Similarity=0.205 Sum_probs=91.3
Q ss_pred cceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC--
Q 024866 59 SCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT-- 136 (261)
Q Consensus 59 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~-- 136 (261)
..|+.|..++|.+.....+.....+.++|+.|.+.+|..+....+. +-..+.+.|+.+.+.+|....+-+
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft--------~l~rn~~~Le~l~~e~~~~~~d~tL~ 365 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT--------MLGRNCPHLERLDLEECGLITDGTLA 365 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh--------hhhcCChhhhhhcccccceehhhhHh
Confidence 3467777777776554433122345678888888888875433221 112467789999999887666542
Q ss_pred -ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccC-CCccCCccceeeeccCcc
Q 024866 137 -FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW-KPLPFTHLKKMAVLMCDQ 214 (261)
Q Consensus 137 -~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~ 214 (261)
...++|.|++|.++.|..+.+-.. .. .....-....|..+.+.+||.++.-.- .-..+++||.+++.+|..
T Consensus 366 sls~~C~~lr~lslshce~itD~gi----~~---l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 366 SLSRNCPRLRVLSLSHCELITDEGI----RH---LSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hhccCCchhccCChhhhhhhhhhhh----hh---hhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 224689999999999976654310 00 001122356688888899887654321 123567888888888877
Q ss_pred CCCCC
Q 024866 215 LRKPP 219 (261)
Q Consensus 215 L~~lp 219 (261)
..+=+
T Consensus 439 vtk~~ 443 (483)
T KOG4341|consen 439 VTKEA 443 (483)
T ss_pred hhhhh
Confidence 65533
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.85 E-value=0.0014 Score=57.24 Aligned_cols=135 Identities=21% Similarity=0.217 Sum_probs=80.5
Q ss_pred hhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecc
Q 024866 25 LVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKID 104 (261)
Q Consensus 25 ~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~ 104 (261)
..+++..-+-|+.++++.-. +..+-.+.++.+.++.|+++. +++..+ .++..+.+|..|++++-. |..+.
T Consensus 276 ~~~~~dTWq~LtelDLS~N~---I~~iDESvKL~Pkir~L~lS~-N~i~~v---~nLa~L~~L~~LDLS~N~-Ls~~~-- 345 (490)
T KOG1259|consen 276 ALVSADTWQELTELDLSGNL---ITQIDESVKLAPKLRRLILSQ-NRIRTV---QNLAELPQLQLLDLSGNL-LAECV-- 345 (490)
T ss_pred eEEecchHhhhhhccccccc---hhhhhhhhhhccceeEEeccc-cceeee---hhhhhcccceEeecccch-hHhhh--
Confidence 34444445555566666433 233344555666788888875 455555 456777888888877532 22210
Q ss_pred cccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEe
Q 024866 105 YTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLD 184 (261)
Q Consensus 105 ~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~ 184 (261)
+- ..-+.|.|.|.+.+- .+++++.++.+=+|..|++++- +++++-.- .+++.+|+|+++.
T Consensus 346 Gw--------h~KLGNIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~N-~Ie~ldeV----------~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 346 GW--------HLKLGNIKTLKLAQN-KIETLSGLRKLYSLVNLDLSSN-QIEELDEV----------NHIGNLPCLETLR 405 (490)
T ss_pred hh--------HhhhcCEeeeehhhh-hHhhhhhhHhhhhheecccccc-chhhHHHh----------cccccccHHHHHh
Confidence 00 023557777777653 5666666777778888888773 33332110 1567788888888
Q ss_pred ccCCc
Q 024866 185 LDDLP 189 (261)
Q Consensus 185 L~~~~ 189 (261)
+.+-|
T Consensus 406 L~~NP 410 (490)
T KOG1259|consen 406 LTGNP 410 (490)
T ss_pred hcCCC
Confidence 87765
No 32
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.79 E-value=0.00092 Score=54.92 Aligned_cols=67 Identities=27% Similarity=0.412 Sum_probs=33.6
Q ss_pred cCCCCCcEEEEecCCCCCCCC--cc-ccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccc
Q 024866 116 FVFRSLHRVIIGECHKLKDVT--FL-VFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLK 192 (261)
Q Consensus 116 ~~~~~L~~L~l~~C~~l~~l~--~l-~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~ 192 (261)
..+++++.|.+.+|..+-+.- .+ +-.|+|+.|+|++|+.+++-.- ..+..|++|+.|.|.+++...
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-----------~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-----------ACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-----------HHHHHhhhhHHHHhcCchhhh
Confidence 345555555566665555431 11 2356666666666655443110 133445666666666655544
Q ss_pred c
Q 024866 193 S 193 (261)
Q Consensus 193 ~ 193 (261)
.
T Consensus 191 ~ 191 (221)
T KOG3864|consen 191 N 191 (221)
T ss_pred c
Confidence 3
No 33
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.72 E-value=0.0071 Score=59.24 Aligned_cols=162 Identities=15% Similarity=0.079 Sum_probs=79.4
Q ss_pred cCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccC
Q 024866 33 KYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKR 112 (261)
Q Consensus 33 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~ 112 (261)
++|+.|+|+......-.-..+....++.|++|.+.+-.-... .....-.++++|..|+|+++. +..+ .+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~Tn-I~nl----~G----- 190 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTN-ISNL----SG----- 190 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch-hHHHHhhccCccceeecCCCC-ccCc----HH-----
Confidence 677777777533221111223334566888888887432111 111223578888888888765 2212 11
Q ss_pred CCCcCCCCCcEEEEecCCCCCCCC---ccccCCCCcEEEEecccccccc--cccccccccCcccCCcccCCcccEEeccC
Q 024866 113 REPFVFRSLHRVIIGECHKLKDVT---FLVFAPNLKSLRLFDCGAMEEI--ISVGKIAETPEMMGHISPFENLQSLDLDD 187 (261)
Q Consensus 113 p~~~~~~~L~~L~l~~C~~l~~l~---~l~~lp~L~~L~i~~C~~L~~i--~~~~~~~~~~~~~~~~~~~p~L~~L~L~~ 187 (261)
.+.+.+|+.|.+++.. +++-. -+-.|.+|+.|+|+.=.....- +..- -+....+|+|+.|+.++
T Consensus 191 --IS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qY--------lec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 191 --ISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQY--------LECGMVLPELRFLDCSG 259 (699)
T ss_pred --HhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHH--------HHhcccCccccEEecCC
Confidence 1456677777666542 22211 1235778888888764433221 1000 01122377777777764
Q ss_pred CcccccccC-CCccCCccceeeeccCccCC
Q 024866 188 LPHLKSIFW-KPLPFTHLKKMAVLMCDQLR 216 (261)
Q Consensus 188 ~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~ 216 (261)
-.-=+.+.. -...-|+|+.+.+.+|....
T Consensus 260 Tdi~~~~le~ll~sH~~L~~i~~~~~~~~~ 289 (699)
T KOG3665|consen 260 TDINEEILEELLNSHPNLQQIAALDCLALS 289 (699)
T ss_pred cchhHHHHHHHHHhCccHhhhhhhhhhccc
Confidence 221000100 01234666666666544433
No 34
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.66 E-value=0.0016 Score=52.49 Aligned_cols=144 Identities=20% Similarity=0.180 Sum_probs=80.3
Q ss_pred ceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC-cc
Q 024866 60 CIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT-FL 138 (261)
Q Consensus 60 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~-~l 138 (261)
++..|.++. ..+..++ +.+..+.+|+.|.+.+-. ++. .+++..++++|+.|.+. ..++..++ ..
T Consensus 34 ~ITrLtLSH-NKl~~vp--pnia~l~nlevln~~nnq-ie~----------lp~~issl~klr~lnvg-mnrl~~lprgf 98 (264)
T KOG0617|consen 34 NITRLTLSH-NKLTVVP--PNIAELKNLEVLNLSNNQ-IEE----------LPTSISSLPKLRILNVG-MNRLNILPRGF 98 (264)
T ss_pred hhhhhhccc-CceeecC--CcHHHhhhhhhhhcccch-hhh----------cChhhhhchhhhheecc-hhhhhcCcccc
Confidence 444555554 2333333 466667777777666532 332 22334567777777664 22343332 23
Q ss_pred ccCCCCcEEEEeccccccc-cccccc------------ccccCcccCCcccCCcccEEeccCCcccccccCCCccCCccc
Q 024866 139 VFAPNLKSLRLFDCGAMEE-IISVGK------------IAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLK 205 (261)
Q Consensus 139 ~~lp~L~~L~i~~C~~L~~-i~~~~~------------~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~ 205 (261)
+.+|.|+.|++..- ++.+ ...... +...+-+|...+.+.+|+.|.+.+ .+|-+++...+.+..|+
T Consensus 99 gs~p~levldltyn-nl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lr 176 (264)
T KOG0617|consen 99 GSFPALEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLR 176 (264)
T ss_pred CCCchhhhhhcccc-ccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHHHHHHHHHH
Confidence 56777777777763 2322 111100 000112455667778888888776 34666776677788999
Q ss_pred eeeeccCccCCCCCCC
Q 024866 206 KMAVLMCDQLRKPPLD 221 (261)
Q Consensus 206 ~L~i~~C~~L~~lp~~ 221 (261)
+|.|.+- +|+.+|..
T Consensus 177 elhiqgn-rl~vlppe 191 (264)
T KOG0617|consen 177 ELHIQGN-RLTVLPPE 191 (264)
T ss_pred HHhcccc-eeeecChh
Confidence 9988764 56777744
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.0067 Score=55.29 Aligned_cols=37 Identities=27% Similarity=0.536 Sum_probs=26.6
Q ss_pred cCCCCCcEEEEecCCCCC--CCCc-cccCCCCcEEEEeccc
Q 024866 116 FVFRSLHRVIIGECHKLK--DVTF-LVFAPNLKSLRLFDCG 153 (261)
Q Consensus 116 ~~~~~L~~L~l~~C~~l~--~l~~-l~~lp~L~~L~i~~C~ 153 (261)
..+++||.|.+.+| ++. ++.+ +..+|+|+.|.+..-+
T Consensus 194 ~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred hhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhccc
Confidence 57899999999999 454 2222 2458889888888753
No 36
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=95.35 E-value=0.0014 Score=62.28 Aligned_cols=41 Identities=12% Similarity=0.216 Sum_probs=23.9
Q ss_pred ccCCcccCCcccEEeccCCcccccccCCCccCCccceeeecc
Q 024866 170 MMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLM 211 (261)
Q Consensus 170 ~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~ 211 (261)
+|+.+..+++|+.|.|++ .+++.+......+.+|+.|.++.
T Consensus 237 vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSr 277 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSR 277 (1255)
T ss_pred chHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhcccc
Confidence 344555666777777766 33555544444556666666644
No 37
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.65 E-value=0.007 Score=49.82 Aligned_cols=68 Identities=12% Similarity=0.073 Sum_probs=47.0
Q ss_pred ccceeEEEEcCCCCCCcccccccc-cccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCC
Q 024866 58 KSCIRSLQLRLVRDTPSIIDATAF-ADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDV 135 (261)
Q Consensus 58 ~~~L~~L~L~~c~~l~~l~~~~~l-~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l 135 (261)
+..++.|.+.+|..+....+ .-+ +-.++|+.|+|++|+.+.+-.+ .....|++|+.|.+.+.+.+.++
T Consensus 124 l~~i~~l~l~~ck~~dD~~L-~~l~~~~~~L~~L~lsgC~rIT~~GL---------~~L~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCL-ERLGGLAPSLQDLDLSGCPRITDGGL---------ACLLKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred cchhhhheeccccchhhHHH-HHhcccccchheeeccCCCeechhHH---------HHHHHhhhhHHHHhcCchhhhch
Confidence 34677888888887766654 223 3467889999999987654211 22256888888888888877765
No 38
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.39 E-value=0.039 Score=33.92 Aligned_cols=39 Identities=28% Similarity=0.525 Sum_probs=20.8
Q ss_pred CCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccc
Q 024866 142 PNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSI 194 (261)
Q Consensus 142 p~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i 194 (261)
++|++|+++++ .++++.. .+..+++|+.|++++.+ ++.+
T Consensus 1 ~~L~~L~l~~N-~i~~l~~------------~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPP------------ELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp TT-SEEEETSS-S-SSHGG------------HGTTCTTSSEEEETSSC-CSBE
T ss_pred CcceEEEccCC-CCcccCc------------hHhCCCCCCEEEecCCC-CCCC
Confidence 46777777765 3333321 24456777777776663 4433
No 39
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.06 E-value=0.013 Score=53.22 Aligned_cols=95 Identities=16% Similarity=0.093 Sum_probs=62.4
Q ss_pred cCCCCCcEEEEecCCCCCCCCc-cccCCCCcEEEEecccccccccccc---c------c--cccCccc-CCcccCCcccE
Q 024866 116 FVFRSLHRVIIGECHKLKDVTF-LVFAPNLKSLRLFDCGAMEEIISVG---K------I--AETPEMM-GHISPFENLQS 182 (261)
Q Consensus 116 ~~~~~L~~L~l~~C~~l~~l~~-l~~lp~L~~L~i~~C~~L~~i~~~~---~------~--~~~~~~~-~~~~~~p~L~~ 182 (261)
..+++|..|++++- -+.+++. .+.+..|+.|+|+.- ....++..- + . ....+++ .++..+.+|++
T Consensus 432 ~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred Hhhhcceeeecccc-hhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 46778888888764 2455542 245777999999864 233222100 0 0 0011232 34788999999
Q ss_pred EeccCCcccccccCCCccCCccceeeeccCc
Q 024866 183 LDLDDLPHLKSIFWKPLPFTHLKKMAVLMCD 213 (261)
Q Consensus 183 L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~ 213 (261)
|++.+ ..+..++.+.+.+.+|++|.+++-|
T Consensus 510 LDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 510 LDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred eccCC-CchhhCChhhccccceeEEEecCCc
Confidence 99987 4588899888899999999998865
No 40
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=93.54 E-value=0.015 Score=47.04 Aligned_cols=84 Identities=15% Similarity=0.174 Sum_probs=50.3
Q ss_pred CCCcCCCCCcEEEEecCCCCCCCC-ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccc
Q 024866 113 REPFVFRSLHRVIIGECHKLKDVT-FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHL 191 (261)
Q Consensus 113 p~~~~~~~L~~L~l~~C~~l~~l~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L 191 (261)
|....+.+|+.|.+.+- .++.++ .++.+|.|+.|+++ ++.+.. .|.++++||.|+.|++.+- +|
T Consensus 50 pnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvg-mnrl~~------------lprgfgs~p~levldltyn-nl 114 (264)
T KOG0617|consen 50 PNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVG-MNRLNI------------LPRGFGSFPALEVLDLTYN-NL 114 (264)
T ss_pred CcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecc-hhhhhc------------CccccCCCchhhhhhcccc-cc
Confidence 44456667777777664 566653 34667777777765 222221 2346778888888888652 33
Q ss_pred --ccccCCCccCCccceeeecc
Q 024866 192 --KSIFWKPLPFTHLKKMAVLM 211 (261)
Q Consensus 192 --~~i~~~~~~~p~L~~L~i~~ 211 (261)
..++...+.+..|+.|++.+
T Consensus 115 ~e~~lpgnff~m~tlralyl~d 136 (264)
T KOG0617|consen 115 NENSLPGNFFYMTTLRALYLGD 136 (264)
T ss_pred ccccCCcchhHHHHHHHHHhcC
Confidence 23444445566777776654
No 41
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.39 E-value=0.049 Score=26.32 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=8.2
Q ss_pred CccceeeeccCccCCCCC
Q 024866 202 THLKKMAVLMCDQLRKPP 219 (261)
Q Consensus 202 p~L~~L~i~~C~~L~~lp 219 (261)
++|+.|++++|. |+++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 456666666666 66554
No 42
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=92.77 E-value=0.032 Score=55.30 Aligned_cols=20 Identities=40% Similarity=0.684 Sum_probs=9.9
Q ss_pred cccCCCCcEEEEecccccccc
Q 024866 138 LVFAPNLKSLRLFDCGAMEEI 158 (261)
Q Consensus 138 l~~lp~L~~L~i~~C~~L~~i 158 (261)
+..+|.|+.++|+ |++|.++
T Consensus 448 ~~~l~qL~~lDlS-~N~L~~~ 467 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLS-CNNLSEV 467 (1081)
T ss_pred hhhcCcceEEecc-cchhhhh
Confidence 3445555555554 3444443
No 43
>PLN03150 hypothetical protein; Provisional
Probab=91.49 E-value=0.52 Score=45.92 Aligned_cols=91 Identities=12% Similarity=0.050 Sum_probs=49.1
Q ss_pred CcCCCCCcEEEEecCCCCC-CCC-ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccc
Q 024866 115 PFVFRSLHRVIIGECHKLK-DVT-FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLK 192 (261)
Q Consensus 115 ~~~~~~L~~L~l~~C~~l~-~l~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~ 192 (261)
.+.+++|+.|+++++ .+. .++ .++.+++|+.|+++++. +... ++..+..+++|+.|++.+..--.
T Consensus 438 i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~-lsg~-----------iP~~l~~L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 438 ISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNS-FNGS-----------IPESLGQLTSLRILNLNGNSLSG 504 (623)
T ss_pred HhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCC-CCCC-----------CchHHhcCCCCCEEECcCCcccc
Confidence 356677777777776 343 232 34667778887777753 2211 12244567778888877754222
Q ss_pred cccCCCcc-CCccceeeeccCccCCCC
Q 024866 193 SIFWKPLP-FTHLKKMAVLMCDQLRKP 218 (261)
Q Consensus 193 ~i~~~~~~-~p~L~~L~i~~C~~L~~l 218 (261)
.++..... +.++..+.+.+.+.+-..
T Consensus 505 ~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 505 RVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred cCChHHhhccccCceEEecCCccccCC
Confidence 33321111 234556666655544433
No 44
>PLN03150 hypothetical protein; Provisional
Probab=90.68 E-value=0.4 Score=46.71 Aligned_cols=86 Identities=15% Similarity=0.113 Sum_probs=59.0
Q ss_pred CcEEEEecCCCCCCC--CccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccc-cccCC
Q 024866 121 LHRVIIGECHKLKDV--TFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLK-SIFWK 197 (261)
Q Consensus 121 L~~L~l~~C~~l~~l--~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~-~i~~~ 197 (261)
+..|++.++ ++... ..++.+++|+.|+++++. +... ++..+..+++|+.|++.+.. +. .++..
T Consensus 420 v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~-l~g~-----------iP~~~~~l~~L~~LdLs~N~-lsg~iP~~ 485 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNS-IRGN-----------IPPSLGSITSLEVLDLSYNS-FNGSIPES 485 (623)
T ss_pred EEEEECCCC-CccccCCHHHhCCCCCCEEECCCCc-ccCc-----------CChHHhCCCCCCEEECCCCC-CCCCCchH
Confidence 666777765 34432 134678999999999864 3321 22345678999999999875 44 45545
Q ss_pred CccCCccceeeeccCccCCCCCC
Q 024866 198 PLPFTHLKKMAVLMCDQLRKPPL 220 (261)
Q Consensus 198 ~~~~p~L~~L~i~~C~~L~~lp~ 220 (261)
...+++|+.|+++++.--..+|.
T Consensus 486 l~~L~~L~~L~Ls~N~l~g~iP~ 508 (623)
T PLN03150 486 LGQLTSLRILNLNGNSLSGRVPA 508 (623)
T ss_pred HhcCCCCCEEECcCCcccccCCh
Confidence 56789999999999865555664
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=90.67 E-value=0.24 Score=44.95 Aligned_cols=135 Identities=19% Similarity=0.219 Sum_probs=64.2
Q ss_pred ceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCcc-
Q 024866 60 CIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFL- 138 (261)
Q Consensus 60 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l- 138 (261)
+|+.|++++ ..+..++ ..++.+++|+.|.+++++-- .+. +..+..++|+.|++++. ++.+++..
T Consensus 141 nL~~L~l~~-N~i~~l~--~~~~~l~~L~~L~l~~N~l~-~l~----------~~~~~~~~L~~L~ls~N-~i~~l~~~~ 205 (394)
T COG4886 141 NLKELDLSD-NKIESLP--SPLRNLPNLKNLDLSFNDLS-DLP----------KLLSNLSNLNNLDLSGN-KISDLPPEI 205 (394)
T ss_pred hcccccccc-cchhhhh--hhhhccccccccccCCchhh-hhh----------hhhhhhhhhhheeccCC-ccccCchhh
Confidence 566666654 2333331 23566667777776665421 111 11114566666766665 45555433
Q ss_pred ccCCCCcEEEEeccccccccccccccc----------ccCcccCCcccCCcccEEeccCCcccccccCCCccCCccceee
Q 024866 139 VFAPNLKSLRLFDCGAMEEIISVGKIA----------ETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMA 208 (261)
Q Consensus 139 ~~lp~L~~L~i~~C~~L~~i~~~~~~~----------~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~ 208 (261)
..+.+|++|.+.+-..++.+....... .....+......++|+.|++.+.. +..+.. ...+.+++.|+
T Consensus 206 ~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~-i~~i~~-~~~~~~l~~L~ 283 (394)
T COG4886 206 ELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ-ISSISS-LGSLTNLRELD 283 (394)
T ss_pred hhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccc-cccccc-ccccCccCEEe
Confidence 233336666665532222111000000 000112344556667777776643 555543 44566777777
Q ss_pred ecc
Q 024866 209 VLM 211 (261)
Q Consensus 209 i~~ 211 (261)
+.+
T Consensus 284 ~s~ 286 (394)
T COG4886 284 LSG 286 (394)
T ss_pred ccC
Confidence 765
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=89.58 E-value=0.064 Score=52.22 Aligned_cols=35 Identities=26% Similarity=0.264 Sum_probs=20.3
Q ss_pred cCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEec
Q 024866 116 FVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFD 151 (261)
Q Consensus 116 ~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~ 151 (261)
..++.|+.|+++.- ++.+...+..+++|+.|+|+.
T Consensus 184 qll~ale~LnLshN-k~~~v~~Lr~l~~LkhLDlsy 218 (1096)
T KOG1859|consen 184 QLLPALESLNLSHN-KFTKVDNLRRLPKLKHLDLSY 218 (1096)
T ss_pred HHHHHhhhhccchh-hhhhhHHHHhccccccccccc
Confidence 34556666666553 444444455567777777764
No 47
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.20 E-value=0.027 Score=48.79 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=11.1
Q ss_pred cccCCcccEEeccCCcc
Q 024866 174 ISPFENLQSLDLDDLPH 190 (261)
Q Consensus 174 ~~~~p~L~~L~L~~~~~ 190 (261)
+..+|+|+.|.|..-|-
T Consensus 84 LknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPC 100 (388)
T ss_pred HhcCchhhhHhhccCCc
Confidence 45677777777766553
No 48
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=88.03 E-value=0.5 Score=42.92 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=21.7
Q ss_pred CccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCC
Q 024866 136 TFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDL 188 (261)
Q Consensus 136 ~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~ 188 (261)
..++.+++|++|+++++ .+.++. .+..+.+|+.|++.+-
T Consensus 249 ~~~~~l~~l~~L~~s~n-~i~~i~-------------~~~~~~~l~~L~~s~n 287 (394)
T COG4886 249 ESIGNLSNLETLDLSNN-QISSIS-------------SLGSLTNLRELDLSGN 287 (394)
T ss_pred chhccccccceeccccc-cccccc-------------cccccCccCEEeccCc
Confidence 34556677777777664 222222 1344666777777653
No 49
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=87.56 E-value=4 Score=30.24 Aligned_cols=10 Identities=20% Similarity=0.178 Sum_probs=4.1
Q ss_pred CCCCcEEEEe
Q 024866 118 FRSLHRVIIG 127 (261)
Q Consensus 118 ~~~L~~L~l~ 127 (261)
+++|+.+.+.
T Consensus 34 ~~~l~~i~~~ 43 (129)
T PF13306_consen 34 CTSLKSINFP 43 (129)
T ss_dssp -TT-SEEEES
T ss_pred cccccccccc
Confidence 3455555554
No 50
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=86.69 E-value=0.16 Score=44.69 Aligned_cols=52 Identities=23% Similarity=0.114 Sum_probs=26.0
Q ss_pred cccccccCCCcchhhhhhcc-cCCceEEEEEcchHHHHHHhhCcccccceeEEEEcC
Q 024866 13 SEESVLFGGGEVLVQELLGL-KYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRL 68 (261)
Q Consensus 13 ~~~~~~~~~~~~~l~eL~~L-~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~ 68 (261)
.++.|++...+..++|=..| ++++.|.++--+...+..+ ..+.+|+.|++++
T Consensus 286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nL----a~L~~L~~LDLS~ 338 (490)
T KOG1259|consen 286 LTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNL----AELPQLQLLDLSG 338 (490)
T ss_pred hhhccccccchhhhhhhhhhccceeEEeccccceeeehhh----hhcccceEeeccc
Confidence 44566666666666554443 5666666653332222221 1233556666654
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=86.53 E-value=1.3 Score=36.87 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=17.5
Q ss_pred CCCCCcEEEEec--CCCCCCCCccccCCCCcEEEEec
Q 024866 117 VFRSLHRVIIGE--CHKLKDVTFLVFAPNLKSLRLFD 151 (261)
Q Consensus 117 ~~~~L~~L~l~~--C~~l~~l~~l~~lp~L~~L~i~~ 151 (261)
.+++|+.|.+.+ ...+.++..+..+|.|++|.+-+
T Consensus 86 ~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 86 FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred hccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 355566665553 22333344445556666655544
No 52
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=85.85 E-value=0.15 Score=50.79 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=16.0
Q ss_pred CcchhhhhhcccCCceEEEEE
Q 024866 22 GEVLVQELLGLKYLEVLELTL 42 (261)
Q Consensus 22 ~~~~l~eL~~L~~L~~L~i~~ 42 (261)
+++.+.-|.+..+||+|++.-
T Consensus 372 td~c~p~l~~~~hLKVLhLsy 392 (1081)
T KOG0618|consen 372 TDSCFPVLVNFKHLKVLHLSY 392 (1081)
T ss_pred cccchhhhccccceeeeeecc
Confidence 466777788888888888773
No 53
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=85.12 E-value=0.58 Score=24.98 Aligned_cols=17 Identities=12% Similarity=0.440 Sum_probs=12.5
Q ss_pred CCccceeeeccCccCCC
Q 024866 201 FTHLKKMAVLMCDQLRK 217 (261)
Q Consensus 201 ~p~L~~L~i~~C~~L~~ 217 (261)
+|+|+.|.+++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46788888888887654
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.84 E-value=0.3 Score=42.92 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=9.7
Q ss_pred cCCCCcEEEEeccc
Q 024866 140 FAPNLKSLRLFDCG 153 (261)
Q Consensus 140 ~lp~L~~L~i~~C~ 153 (261)
.+||+..+.+..|+
T Consensus 197 ~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGP 210 (418)
T ss_pred hcccchheeeecCc
Confidence 47777777777764
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=82.88 E-value=0.69 Score=39.62 Aligned_cols=134 Identities=19% Similarity=0.125 Sum_probs=74.6
Q ss_pred eeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecC--CCCCCCCc-
Q 024866 61 IRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGEC--HKLKDVTF- 137 (261)
Q Consensus 61 L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C--~~l~~l~~- 137 (261)
.+.+.+.+|.....- +....-.+..|+.|.+.++.... + .....+++||.|.++.- .-.-.+..
T Consensus 20 v~~l~lD~~~s~~g~-~~gl~d~~~~le~ls~~n~gltt-~-----------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl 86 (260)
T KOG2739|consen 20 VDELFLDNARSGAGK-LGGLTDEFVELELLSVINVGLTT-L-----------TNFPKLPKLKKLELSDNYRRVSGGLEVL 86 (260)
T ss_pred hhhhhcchhhhcCCC-cccccccccchhhhhhhccceee-c-----------ccCCCcchhhhhcccCCcccccccceeh
Confidence 445555555432110 10122345667777766665322 1 11245789999988643 11122222
Q ss_pred cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccc--cC-CCccCCccceeeeccCcc
Q 024866 138 LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSI--FW-KPLPFTHLKKMAVLMCDQ 214 (261)
Q Consensus 138 l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i--~~-~~~~~p~L~~L~i~~C~~ 214 (261)
...+|+|++|++++- .++.+-.. ..+..+.+|.+|.+.+|+-..-- .. ...-+|+|+.|+-.++..
T Consensus 87 ~e~~P~l~~l~ls~N-ki~~lstl----------~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 87 AEKAPNLKVLNLSGN-KIKDLSTL----------RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hhhCCceeEEeecCC-cccccccc----------chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence 235699999999873 44432111 13455788899999998755411 11 133578999998888766
Q ss_pred CCCC
Q 024866 215 LRKP 218 (261)
Q Consensus 215 L~~l 218 (261)
=+.-
T Consensus 156 ~Ea~ 159 (260)
T KOG2739|consen 156 EEAP 159 (260)
T ss_pred cccc
Confidence 5543
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=82.69 E-value=0.3 Score=41.79 Aligned_cols=90 Identities=17% Similarity=0.122 Sum_probs=54.6
Q ss_pred ccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC-
Q 024866 58 KSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT- 136 (261)
Q Consensus 58 ~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~- 136 (261)
+++|+.|.++.-..-....+......+++|++|.+++-. ++.+ ..++....+.+|+.|.+.+|.-.. +.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~l--------stl~pl~~l~nL~~Ldl~n~~~~~-l~d 133 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDL--------STLRPLKELENLKSLDLFNCSVTN-LDD 133 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccc--------cccchhhhhcchhhhhcccCCccc-ccc
Confidence 347888998864211122221233455899999888642 2211 112333568889999999996433 42
Q ss_pred ----ccccCCCCcEEEEeccccccc
Q 024866 137 ----FLVFAPNLKSLRLFDCGAMEE 157 (261)
Q Consensus 137 ----~l~~lp~L~~L~i~~C~~L~~ 157 (261)
....+|+|++|+-.++..-+.
T Consensus 134 yre~vf~ll~~L~~LD~~dv~~~Ea 158 (260)
T KOG2739|consen 134 YREKVFLLLPSLKYLDGCDVDGEEA 158 (260)
T ss_pred HHHHHHHHhhhhccccccccCCccc
Confidence 124589999998888876543
No 57
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.07 E-value=0.3 Score=44.62 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=19.9
Q ss_pred cCCCCCcEEEEecCCCCCCCC-ccccCCCCcEEEEecc
Q 024866 116 FVFRSLHRVIIGECHKLKDVT-FLVFAPNLKSLRLFDC 152 (261)
Q Consensus 116 ~~~~~L~~L~l~~C~~l~~l~-~l~~lp~L~~L~i~~C 152 (261)
.++.+|+.|++.+- .+..++ .++++.||++|.+.|-
T Consensus 502 ~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 502 KNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred hhhhhcceeccCCC-chhhCChhhccccceeEEEecCC
Confidence 44556666666543 333332 3466666666666664
No 58
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=81.48 E-value=0.67 Score=23.72 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=12.7
Q ss_pred ccceeeeccCccCCCCCCC
Q 024866 203 HLKKMAVLMCDQLRKPPLD 221 (261)
Q Consensus 203 ~L~~L~i~~C~~L~~lp~~ 221 (261)
+|++|++++| +++.+|..
T Consensus 1 ~L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp TESEEEETSS-EESEEGTT
T ss_pred CccEEECCCC-cCEeCChh
Confidence 4677777777 77777654
No 59
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=80.74 E-value=0.89 Score=40.67 Aligned_cols=12 Identities=17% Similarity=0.047 Sum_probs=6.5
Q ss_pred CCccceeeeccC
Q 024866 201 FTHLKKMAVLMC 212 (261)
Q Consensus 201 ~p~L~~L~i~~C 212 (261)
.|.|++|.+.+|
T Consensus 297 k~dL~kLnLngN 308 (382)
T KOG1909|consen 297 KPDLEKLNLNGN 308 (382)
T ss_pred chhhHHhcCCcc
Confidence 455555555554
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.57 E-value=1.5 Score=38.67 Aligned_cols=62 Identities=16% Similarity=0.203 Sum_probs=36.7
Q ss_pred ccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCC--CC-CccccCCCCcEEEEec
Q 024866 79 TAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLK--DV-TFLVFAPNLKSLRLFD 151 (261)
Q Consensus 79 ~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~--~l-~~l~~lp~L~~L~i~~ 151 (261)
..+.++|.|+.|+++ |..|...+ +..| -...+|+.|-+.+- ++. .. +.+..+|.+++|.+++
T Consensus 91 ~ile~lP~l~~LNls-~N~L~s~I-------~~lp--~p~~nl~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 91 AILEQLPALTTLNLS-CNSLSSDI-------KSLP--LPLKNLRVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSD 155 (418)
T ss_pred HHHhcCccceEeecc-CCcCCCcc-------ccCc--ccccceEEEEEcCC-CCChhhhhhhhhcchhhhhhhhcc
Confidence 346789999999876 45454211 1112 23568888877553 221 11 2345688888888776
No 61
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=72.54 E-value=2.2 Score=39.27 Aligned_cols=77 Identities=18% Similarity=0.141 Sum_probs=34.8
Q ss_pred cceeEEEEcCCCCCCccccccc-ccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc
Q 024866 59 SCIRSLQLRLVRDTPSIIDATA-FADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF 137 (261)
Q Consensus 59 ~~L~~L~L~~c~~l~~l~~~~~-l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~ 137 (261)
.+++.|.+.+ ..++.+ .. +..+++|++|.+++-. +..+ .....++.|+.|++.+. .++++..
T Consensus 95 ~~l~~l~l~~-n~i~~i---~~~l~~~~~L~~L~ls~N~-I~~i-----------~~l~~l~~L~~L~l~~N-~i~~~~~ 157 (414)
T KOG0531|consen 95 KSLEALDLYD-NKIEKI---ENLLSSLVNLQVLDLSFNK-ITKL-----------EGLSTLTLLKELNLSGN-LISDISG 157 (414)
T ss_pred cceeeeeccc-cchhhc---ccchhhhhcchheeccccc-cccc-----------cchhhccchhhheeccC-cchhccC
Confidence 3455555554 233333 33 5556666666665421 2111 11123444555555544 3444443
Q ss_pred cccCCCCcEEEEecc
Q 024866 138 LVFAPNLKSLRLFDC 152 (261)
Q Consensus 138 l~~lp~L~~L~i~~C 152 (261)
...+++|+.+++.++
T Consensus 158 ~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 158 LESLKSLKLLDLSYN 172 (414)
T ss_pred CccchhhhcccCCcc
Confidence 344555555554443
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.34 E-value=0.36 Score=42.06 Aligned_cols=28 Identities=21% Similarity=0.151 Sum_probs=13.4
Q ss_pred cchhhhhhcccCCceEEEEEcchHHHHH
Q 024866 23 EVLVQELLGLKYLEVLELTLGSYQALQI 50 (261)
Q Consensus 23 ~~~l~eL~~L~~L~~L~i~~~~~~~l~~ 50 (261)
-..+.-.+.+..|++|++++-+..++..
T Consensus 31 L~DIsic~kMp~lEVLsLSvNkIssL~p 58 (388)
T KOG2123|consen 31 LDDISICEKMPLLEVLSLSVNKISSLAP 58 (388)
T ss_pred ccHHHHHHhcccceeEEeeccccccchh
Confidence 3344444455555555555544444433
No 63
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=69.30 E-value=2.4 Score=38.04 Aligned_cols=123 Identities=20% Similarity=0.141 Sum_probs=61.1
Q ss_pred hhhhhhcccCCceEEEEEcch--HHHHHHhhCcccccceeEEEEcCCCCC--CcccccccccccCCCCeEEEeccCCcce
Q 024866 25 LVQELLGLKYLEVLELTLGSY--QALQILLSSNKLKSCIRSLQLRLVRDT--PSIIDATAFADLNHLNELYIFKGIELEE 100 (261)
Q Consensus 25 ~l~eL~~L~~L~~L~i~~~~~--~~l~~l~~~~~l~~~L~~L~L~~c~~l--~~l~~~~~l~~l~~L~~L~i~~c~~Le~ 100 (261)
.-+-++..+.|+.+.+.--+. .....+.......++|+.|+|.+-.-. -++.+...++.+++|++|++++|- |+.
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~ 255 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LEN 255 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-ccc
Confidence 334455556666666653221 112222222333346777777763211 122223456777788888888884 211
Q ss_pred EecccccccccCCCCcCCCCCcEEEEecCCCCCCC------CccccCCCCcEEEEeccc
Q 024866 101 LKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDV------TFLVFAPNLKSLRLFDCG 153 (261)
Q Consensus 101 l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l------~~l~~lp~L~~L~i~~C~ 153 (261)
=..... ...+ ...+|+|+.|.+.++ .++.= ......|.|+.|++.+|+
T Consensus 256 ~Ga~a~--~~al--~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 256 EGAIAF--VDAL--KESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccHHHH--HHHH--hccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 000000 0001 134778888887776 23321 122347788888888764
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=68.76 E-value=4.2 Score=33.89 Aligned_cols=123 Identities=17% Similarity=0.132 Sum_probs=72.9
Q ss_pred ccccccCCCcchhhhhhcc-cCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccc-cccCCCCeEE
Q 024866 14 EESVLFGGGEVLVQELLGL-KYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAF-ADLNHLNELY 91 (261)
Q Consensus 14 ~~~~~~~~~~~~l~eL~~L-~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l-~~l~~L~~L~ 91 (261)
+.+++.+-....++.+... .+.-.++++.-+ +..+...+. +.+|.+|.+++ .++..+.. .+ ..+++|+.|.
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNd---l~~l~~lp~-l~rL~tLll~n-NrIt~I~p--~L~~~~p~l~~L~ 94 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDND---LRKLDNLPH-LPRLHTLLLNN-NRITRIDP--DLDTFLPNLKTLI 94 (233)
T ss_pred cccccccccccchhhccccccccceecccccc---hhhcccCCC-ccccceEEecC-Ccceeecc--chhhhccccceEE
Confidence 3455555566666665553 344445555322 333333332 45789999887 56666653 33 3567899999
Q ss_pred EeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCC-----CccccCCCCcEEEEeccc
Q 024866 92 IFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDV-----TFLVFAPNLKSLRLFDCG 153 (261)
Q Consensus 92 i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l-----~~l~~lp~L~~L~i~~C~ 153 (261)
+.+-. ++.+ +.+.....+|+|++|.+-+-+ +++. ..+..+|+|+.|+..+-.
T Consensus 95 LtnNs-i~~l--------~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 95 LTNNS-IQEL--------GDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCcc-hhhh--------hhcchhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 88633 3333 111223568899999887654 3322 234568999999887654
No 65
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=63.74 E-value=0.85 Score=44.81 Aligned_cols=79 Identities=20% Similarity=0.168 Sum_probs=49.8
Q ss_pred EeeeccccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCC
Q 024866 8 NFHEASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHL 87 (261)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L 87 (261)
++.|+.+..+++...-+....|..+.+|+.|++..-....+.++-.. .-.|+.|.|+| +.++.+ ..+.++.+|
T Consensus 184 qll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~---gc~L~~L~lrn-N~l~tL---~gie~LksL 256 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMV---GCKLQLLNLRN-NALTTL---RGIENLKSL 256 (1096)
T ss_pred HHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchh---hhhheeeeecc-cHHHhh---hhHHhhhhh
Confidence 35677888888888888888888888888888874332222222221 12366777776 333444 345666667
Q ss_pred CeEEEe
Q 024866 88 NELYIF 93 (261)
Q Consensus 88 ~~L~i~ 93 (261)
+.|+++
T Consensus 257 ~~LDls 262 (1096)
T KOG1859|consen 257 YGLDLS 262 (1096)
T ss_pred hccchh
Confidence 766665
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=61.42 E-value=36 Score=24.93 Aligned_cols=10 Identities=30% Similarity=0.408 Sum_probs=3.9
Q ss_pred CCCCcEEEEe
Q 024866 141 APNLKSLRLF 150 (261)
Q Consensus 141 lp~L~~L~i~ 150 (261)
+++|+.+.+.
T Consensus 34 ~~~l~~i~~~ 43 (129)
T PF13306_consen 34 CTSLKSINFP 43 (129)
T ss_dssp -TT-SEEEES
T ss_pred cccccccccc
Confidence 4445555444
No 67
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=54.49 E-value=4.1 Score=37.45 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=10.6
Q ss_pred ccccCCCcchhhh-hhcccCCceEEEE
Q 024866 16 SVLFGGGEVLVQE-LLGLKYLEVLELT 41 (261)
Q Consensus 16 ~~~~~~~~~~l~e-L~~L~~L~~L~i~ 41 (261)
.++.+.....+.. +.++.+|+.|+++
T Consensus 100 l~l~~n~i~~i~~~l~~~~~L~~L~ls 126 (414)
T KOG0531|consen 100 LDLYDNKIEKIENLLSSLVNLQVLDLS 126 (414)
T ss_pred eeccccchhhcccchhhhhcchheecc
Confidence 3333333333333 4444444444444
No 68
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=53.76 E-value=8 Score=19.84 Aligned_cols=13 Identities=38% Similarity=0.567 Sum_probs=7.0
Q ss_pred CCCCcEEEEeccc
Q 024866 141 APNLKSLRLFDCG 153 (261)
Q Consensus 141 lp~L~~L~i~~C~ 153 (261)
+++|++|+|++|.
T Consensus 1 ~~~L~~L~l~~n~ 13 (24)
T PF13516_consen 1 NPNLETLDLSNNQ 13 (24)
T ss_dssp -TT-SEEE-TSSB
T ss_pred CCCCCEEEccCCc
Confidence 3567777777764
No 69
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=52.71 E-value=9.6 Score=19.90 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=9.3
Q ss_pred CccceeeeccCccCCCCCCC
Q 024866 202 THLKKMAVLMCDQLRKPPLD 221 (261)
Q Consensus 202 p~L~~L~i~~C~~L~~lp~~ 221 (261)
++|+.|++.++ +++.+|.+
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCEEECCCC-cCCcCCHH
Confidence 34555555444 45555543
No 70
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=52.71 E-value=9.6 Score=19.90 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=9.3
Q ss_pred CccceeeeccCccCCCCCCC
Q 024866 202 THLKKMAVLMCDQLRKPPLD 221 (261)
Q Consensus 202 p~L~~L~i~~C~~L~~lp~~ 221 (261)
++|+.|++.++ +++.+|.+
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCEEECCCC-cCCcCCHH
Confidence 34555555444 45555543
No 71
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=33.03 E-value=4.1 Score=39.01 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=23.4
Q ss_pred cCCcccCCcccEEeccCCcccccccCC---CccCCccceeeeccC
Q 024866 171 MGHISPFENLQSLDLDDLPHLKSIFWK---PLPFTHLKKMAVLMC 212 (261)
Q Consensus 171 ~~~~~~~p~L~~L~L~~~~~L~~i~~~---~~~~p~L~~L~i~~C 212 (261)
|..+..+..|+.|.|.+-| |++=+.. -+-..-.++|.+..|
T Consensus 227 Pv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred chhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 3345556677777777655 5442211 112345677888888
No 72
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=32.83 E-value=15 Score=33.82 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=19.6
Q ss_pred cCCCCCcEEEEecCCCCCCCCcc--ccCCCCcEEEEe
Q 024866 116 FVFRSLHRVIIGECHKLKDVTFL--VFAPNLKSLRLF 150 (261)
Q Consensus 116 ~~~~~L~~L~l~~C~~l~~l~~l--~~lp~L~~L~i~ 150 (261)
..++.|+.|++++- +++.+.|. ..+..|.+|++-
T Consensus 319 ~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 319 QGLSGLKTLSLYDN-QITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred hccccceeeeecCC-eeEEEecccccccceeeeeehc
Confidence 45667777777764 55555432 234555666554
No 73
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=20.21 E-value=36 Score=31.45 Aligned_cols=40 Identities=23% Similarity=0.256 Sum_probs=26.4
Q ss_pred ceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEe
Q 024866 60 CIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELK 102 (261)
Q Consensus 60 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~ 102 (261)
....++|+. .+++.++. .+++.+++|++|+++.- +++.|.
T Consensus 68 ~tveirLdq-N~I~~iP~-~aF~~l~~LRrLdLS~N-~Is~I~ 107 (498)
T KOG4237|consen 68 ETVEIRLDQ-NQISSIPP-GAFKTLHRLRRLDLSKN-NISFIA 107 (498)
T ss_pred cceEEEecc-CCcccCCh-hhccchhhhceeccccc-chhhcC
Confidence 345566664 46677765 67888888888888863 345443
Done!