Query 024866
Match_columns 261
No_of_seqs 140 out of 1786
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 15:46:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024866.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024866hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.5 2.8E-13 9.7E-18 119.2 16.1 198 28-245 99-319 (328)
2 4fcg_A Uncharacterized protein 99.3 4E-12 1.4E-16 111.8 10.9 190 5-210 99-309 (328)
3 3zyi_A Leucine-rich repeat-con 99.2 9.8E-11 3.3E-15 107.0 11.5 202 11-232 75-295 (452)
4 3zyj_A Leucine-rich repeat-con 99.2 1.4E-10 4.6E-15 105.7 12.3 204 11-233 64-285 (440)
5 2xwt_C Thyrotropin receptor; s 99.2 3.1E-10 1.1E-14 94.7 13.1 112 34-158 32-146 (239)
6 4fmz_A Internalin; leucine ric 99.1 2.5E-10 8.5E-15 100.2 11.0 81 7-95 62-142 (347)
7 1h6u_A Internalin H; cell adhe 99.1 2.3E-10 8E-15 99.5 10.5 183 11-219 41-233 (308)
8 4fmz_A Internalin; leucine ric 99.1 1.4E-10 4.7E-15 101.9 7.7 176 7-219 151-327 (347)
9 1o6v_A Internalin A; bacterial 99.0 1.2E-09 4.2E-14 100.0 12.2 133 10-152 176-319 (466)
10 3rfs_A Internalin B, repeat mo 99.0 1.1E-09 3.6E-14 93.5 11.0 84 116-213 130-216 (272)
11 2xwt_C Thyrotropin receptor; s 99.0 2.1E-09 7E-14 89.7 12.1 191 11-233 31-232 (239)
12 3o6n_A APL1; leucine-rich repe 99.0 8.4E-10 2.9E-14 98.6 10.3 109 118-233 225-345 (390)
13 4ezg_A Putative uncharacterize 99.0 1.3E-09 4.3E-14 88.5 10.1 130 59-219 44-175 (197)
14 3rfs_A Internalin B, repeat mo 99.0 1.3E-09 4.6E-14 92.8 10.6 179 22-233 30-211 (272)
15 1ozn_A Reticulon 4 receptor; N 99.0 9.9E-10 3.4E-14 94.0 9.3 180 12-219 33-217 (285)
16 1o6v_A Internalin A; bacterial 99.0 3.7E-09 1.3E-13 96.8 13.7 35 9-43 110-144 (466)
17 1h6t_A Internalin B; cell adhe 99.0 7.1E-10 2.4E-14 95.7 8.4 164 13-213 48-211 (291)
18 3v47_A TOLL-like receptor 5B a 99.0 3E-09 1E-13 96.6 12.8 59 173-233 342-401 (455)
19 2id5_A Lingo-1, leucine rich r 99.0 1.5E-09 5.3E-14 99.4 10.8 184 11-211 32-233 (477)
20 4ezg_A Putative uncharacterize 99.0 5.2E-09 1.8E-13 84.8 12.7 150 30-213 41-192 (197)
21 1h6u_A Internalin H; cell adhe 99.0 7.9E-10 2.7E-14 96.1 8.3 162 7-193 59-231 (308)
22 2ast_B S-phase kinase-associat 99.0 9.5E-11 3.2E-15 102.4 2.5 179 11-212 93-282 (336)
23 1m9s_A Internalin B; cell inva 99.0 6.6E-10 2.3E-14 105.5 8.3 166 12-214 44-209 (605)
24 3zyj_A Leucine-rich repeat-con 99.0 2.2E-09 7.6E-14 97.6 11.5 183 33-233 64-261 (440)
25 2id5_A Lingo-1, leucine rich r 99.0 3.1E-09 1.1E-13 97.3 12.1 56 174-231 268-324 (477)
26 1xku_A Decorin; proteoglycan, 99.0 2.3E-09 7.9E-14 93.6 10.2 49 173-223 235-283 (330)
27 3vq2_A TLR4, TOLL-like recepto 98.9 2.4E-09 8.3E-14 100.8 9.3 60 172-233 467-527 (606)
28 3oja_B Anopheles plasmodium-re 98.9 3.2E-09 1.1E-13 100.4 9.9 108 118-232 231-350 (597)
29 2z66_A Variable lymphocyte rec 98.9 2.5E-09 8.7E-14 92.3 8.2 202 11-233 28-254 (306)
30 2ft3_A Biglycan; proteoglycan, 98.9 2.1E-09 7E-14 94.1 7.5 90 119-223 193-284 (332)
31 3o6n_A APL1; leucine-rich repe 98.9 4.1E-09 1.4E-13 94.1 9.3 196 5-213 111-350 (390)
32 2ast_B S-phase kinase-associat 98.9 2.5E-10 8.5E-15 99.7 0.9 182 29-233 89-278 (336)
33 2z63_A TOLL-like receptor 4, v 98.9 1.1E-08 3.7E-13 95.4 11.9 104 116-233 418-524 (570)
34 1ozn_A Reticulon 4 receptor; N 98.9 1.9E-09 6.6E-14 92.2 6.3 181 5-213 50-236 (285)
35 3zyi_A Leucine-rich repeat-con 98.9 2.5E-09 8.4E-14 97.6 7.2 190 5-213 93-301 (452)
36 1h6t_A Internalin B; cell adhe 98.9 4.4E-09 1.5E-13 90.7 8.4 157 25-219 38-194 (291)
37 3o53_A Protein LRIM1, AGAP0063 98.9 1.6E-09 5.5E-14 94.4 5.2 186 7-220 30-231 (317)
38 3t6q_A CD180 antigen; protein- 98.9 7.6E-09 2.6E-13 97.4 10.2 38 174-212 472-510 (606)
39 2o6q_A Variable lymphocyte rec 98.8 9.6E-08 3.3E-12 81.0 15.6 149 58-233 60-211 (270)
40 3vq2_A TLR4, TOLL-like recepto 98.8 4.9E-09 1.7E-13 98.7 8.2 206 10-233 327-551 (606)
41 1m9s_A Internalin B; cell inva 98.8 6.1E-09 2.1E-13 98.9 8.8 150 26-212 36-185 (605)
42 2z81_A CD282 antigen, TOLL-lik 98.8 7.3E-09 2.5E-13 96.3 9.2 192 9-233 308-503 (549)
43 2z66_A Variable lymphocyte rec 98.8 6E-09 2.1E-13 89.9 7.9 191 5-213 46-259 (306)
44 3oja_A Leucine-rich immune mol 98.8 3E-09 1E-13 98.4 6.1 39 174-213 210-248 (487)
45 2o6q_A Variable lymphocyte rec 98.8 1.7E-08 5.9E-13 85.7 10.2 174 11-213 37-216 (270)
46 3rgz_A Protein brassinosteroid 98.8 1.1E-08 3.7E-13 99.6 9.9 38 116-153 197-234 (768)
47 2z80_A TOLL-like receptor 2, v 98.8 4.6E-09 1.6E-13 92.6 6.4 33 200-233 275-307 (353)
48 1xeu_A Internalin C; cellular 98.8 1.4E-08 4.7E-13 86.3 8.2 158 18-213 26-183 (263)
49 4ecn_A Leucine-rich repeat pro 98.7 5.9E-08 2E-12 95.7 12.3 170 25-212 440-654 (876)
50 2ell_A Acidic leucine-rich nuc 98.7 1.3E-07 4.3E-12 74.3 12.0 134 58-220 23-164 (168)
51 3o53_A Protein LRIM1, AGAP0063 98.7 7.6E-09 2.6E-13 90.0 5.3 166 31-219 32-207 (317)
52 2z80_A TOLL-like receptor 2, v 98.7 5.9E-09 2E-13 91.9 4.5 202 6-213 71-312 (353)
53 2z62_A TOLL-like receptor 4, v 98.7 5.6E-08 1.9E-12 82.6 10.2 147 59-232 76-229 (276)
54 3oja_B Anopheles plasmodium-re 98.7 1.6E-08 5.4E-13 95.6 7.2 196 5-213 117-356 (597)
55 3v47_A TOLL-like receptor 5B a 98.7 5.7E-08 2E-12 88.1 10.2 80 12-95 31-113 (455)
56 1p9a_G Platelet glycoprotein I 98.7 1.3E-07 4.4E-12 81.4 11.9 100 116-231 97-199 (290)
57 3m19_A Variable lymphocyte rec 98.7 2.7E-07 9.2E-12 77.4 13.5 80 60-152 36-117 (251)
58 3j0a_A TOLL-like receptor 5; m 98.7 1E-07 3.6E-12 93.6 12.3 35 60-95 124-158 (844)
59 3rgz_A Protein brassinosteroid 98.7 1.2E-08 4E-13 99.3 5.5 49 172-220 508-556 (768)
60 1ogq_A PGIP-2, polygalacturona 98.7 2E-08 6.8E-13 87.4 6.1 194 7-220 72-286 (313)
61 2z7x_B TOLL-like receptor 1, v 98.7 1.8E-07 6.1E-12 86.4 12.8 116 115-233 344-474 (520)
62 2z81_A CD282 antigen, TOLL-lik 98.7 1.3E-07 4.3E-12 87.9 11.7 175 5-213 328-508 (549)
63 3bz5_A Internalin-J, INLJ; leu 98.7 4.1E-08 1.4E-12 90.0 8.2 55 9-69 83-137 (457)
64 3bz5_A Internalin-J, INLJ; leu 98.7 6.2E-08 2.1E-12 88.8 9.3 177 11-219 42-228 (457)
65 1p9a_G Platelet glycoprotein I 98.7 5E-08 1.7E-12 84.0 8.1 171 12-213 32-206 (290)
66 4eco_A Uncharacterized protein 98.7 6.3E-08 2.2E-12 92.3 9.3 70 25-96 198-284 (636)
67 3t6q_A CD180 antigen; protein- 98.6 1.3E-07 4.5E-12 88.9 11.0 40 174-214 421-461 (606)
68 1ziw_A TOLL-like receptor 3; i 98.6 1.9E-07 6.4E-12 89.1 11.9 150 59-213 329-515 (680)
69 4ecn_A Leucine-rich repeat pro 98.6 1.4E-07 4.8E-12 93.0 11.2 34 59-95 595-629 (876)
70 1wwl_A Monocyte differentiatio 98.6 4.2E-08 1.4E-12 85.1 6.7 100 116-233 198-302 (312)
71 1ogq_A PGIP-2, polygalacturona 98.6 4.5E-08 1.5E-12 85.1 6.8 199 15-233 54-274 (313)
72 4ay9_X Follicle-stimulating ho 98.6 5.9E-07 2E-11 79.1 14.1 55 174-233 198-252 (350)
73 1xku_A Decorin; proteoglycan, 98.6 4.4E-07 1.5E-11 79.0 13.0 58 173-233 211-269 (330)
74 3ogk_B Coronatine-insensitive 98.6 1.2E-08 4.2E-13 95.5 3.3 42 175-218 485-528 (592)
75 3a79_B TLR6, VLRB.59, TOLL-lik 98.6 2.9E-07 9.8E-12 86.1 12.4 37 58-95 120-156 (562)
76 2z63_A TOLL-like receptor 4, v 98.6 7.7E-08 2.6E-12 89.6 7.6 60 173-233 440-500 (570)
77 3g06_A SSPH2 (leucine-rich rep 98.6 6.1E-07 2.1E-11 85.4 13.2 51 177-233 240-290 (622)
78 2z7x_B TOLL-like receptor 1, v 98.6 1.2E-06 4.1E-11 80.9 14.9 34 10-43 89-125 (520)
79 4eco_A Uncharacterized protein 98.6 6.2E-07 2.1E-11 85.4 13.3 48 173-221 531-584 (636)
80 3oja_A Leucine-rich immune mol 98.6 7.8E-08 2.7E-12 88.8 6.7 187 33-233 34-243 (487)
81 2z62_A TOLL-like receptor 4, v 98.5 6.2E-08 2.1E-12 82.3 5.2 179 6-212 47-234 (276)
82 1jl5_A Outer protein YOPM; leu 98.5 1.8E-06 6E-11 79.0 15.1 127 12-152 132-267 (454)
83 4glp_A Monocyte differentiatio 98.5 2E-07 6.9E-12 80.6 8.3 98 117-233 195-300 (310)
84 3g06_A SSPH2 (leucine-rich rep 98.5 3.4E-07 1.2E-11 87.1 10.3 38 176-214 259-296 (622)
85 4ay9_X Follicle-stimulating ho 98.5 5.1E-07 1.7E-11 79.5 10.4 193 11-211 30-255 (350)
86 1ziw_A TOLL-like receptor 3; i 98.5 4.1E-07 1.4E-11 86.7 9.9 98 120-220 249-372 (680)
87 3j0a_A TOLL-like receptor 5; m 98.5 1.7E-06 5.8E-11 85.0 14.4 64 5-69 91-158 (844)
88 1xeu_A Internalin C; cellular 98.5 1.6E-06 5.6E-11 73.4 12.3 122 58-213 40-161 (263)
89 1wwl_A Monocyte differentiatio 98.5 9.8E-08 3.4E-12 82.8 4.8 182 10-213 94-307 (312)
90 3e6j_A Variable lymphocyte rec 98.5 1.3E-06 4.4E-11 72.4 11.2 128 59-213 40-170 (229)
91 3e4g_A ATP synthase subunit S, 98.5 1.1E-07 3.9E-12 75.9 4.6 89 60-156 62-153 (176)
92 2o6s_A Variable lymphocyte rec 98.5 2E-06 6.9E-11 69.7 12.1 127 60-212 29-158 (208)
93 3m19_A Variable lymphocyte rec 98.5 1.5E-06 5E-11 72.8 11.4 153 33-213 35-190 (251)
94 2je0_A Acidic leucine-rich nuc 98.4 2.6E-07 9E-12 71.0 6.1 126 58-211 16-149 (149)
95 3a79_B TLR6, VLRB.59, TOLL-lik 98.4 6.5E-06 2.2E-10 76.9 16.5 115 115-233 373-503 (562)
96 1a9n_A U2A', U2A'; complex (nu 98.4 8.1E-07 2.8E-11 70.4 8.5 127 58-213 18-151 (176)
97 2v9t_B SLIT homolog 2 protein 98.4 3.2E-06 1.1E-10 69.6 12.1 129 59-213 32-163 (220)
98 2v70_A SLIT-2, SLIT homolog 2 98.4 4.6E-06 1.6E-10 68.6 12.2 130 59-213 32-164 (220)
99 2ft3_A Biglycan; proteoglycan, 98.4 6.6E-07 2.2E-11 78.0 7.3 188 6-215 73-307 (332)
100 3e6j_A Variable lymphocyte rec 98.4 5.5E-06 1.9E-10 68.5 12.6 142 62-233 22-165 (229)
101 4g8a_A TOLL-like receptor 4; l 98.3 1.9E-06 6.5E-11 80.8 10.4 128 59-212 52-183 (635)
102 2ca6_A RAN GTPase-activating p 98.3 2E-07 7E-12 83.0 3.3 66 29-95 56-132 (386)
103 2p1m_B Transport inhibitor res 98.3 6.3E-08 2.2E-12 90.6 -0.1 63 31-96 103-167 (594)
104 4glp_A Monocyte differentiatio 98.3 3.6E-07 1.2E-11 79.0 4.5 178 13-213 93-305 (310)
105 2ell_A Acidic leucine-rich nuc 98.3 2.4E-06 8.3E-11 66.9 8.4 126 83-233 22-153 (168)
106 2p1m_B Transport inhibitor res 98.3 3.7E-07 1.3E-11 85.4 3.9 39 175-214 478-518 (594)
107 1jl5_A Outer protein YOPM; leu 98.3 1.1E-05 3.8E-10 73.7 13.4 73 13-95 175-247 (454)
108 2xot_A Amphoterin-induced prot 98.2 7.3E-06 2.5E-10 72.4 11.1 134 59-219 39-179 (361)
109 2o6s_A Variable lymphocyte rec 98.2 2.4E-05 8.4E-10 63.2 12.9 125 84-233 27-154 (208)
110 3e4g_A ATP synthase subunit S, 98.2 9.7E-07 3.3E-11 70.5 3.7 87 86-193 62-154 (176)
111 3ogk_B Coronatine-insensitive 98.1 5.6E-07 1.9E-11 84.2 2.0 43 177-220 377-424 (592)
112 2je0_A Acidic leucine-rich nuc 98.1 4.4E-06 1.5E-10 64.0 6.0 113 82-220 14-130 (149)
113 2ca6_A RAN GTPase-activating p 98.1 7.2E-07 2.5E-11 79.4 1.7 36 177-213 273-314 (386)
114 1dce_A Protein (RAB geranylger 98.1 1.4E-05 4.7E-10 75.3 9.6 108 60-195 442-549 (567)
115 1a9n_A U2A', U2A'; complex (nu 98.1 6.9E-06 2.4E-10 64.9 6.5 127 80-233 14-146 (176)
116 3cvr_A Invasion plasmid antige 98.0 8.5E-06 2.9E-10 76.7 7.9 154 33-214 80-242 (571)
117 2v9t_B SLIT homolog 2 protein 98.0 0.00015 5.1E-09 59.4 13.4 123 85-232 32-157 (220)
118 2o6r_A Variable lymphocyte rec 98.0 8.3E-05 2.8E-09 58.5 11.1 84 116-213 49-135 (177)
119 2v70_A SLIT-2, SLIT homolog 2 97.9 0.0002 6.9E-09 58.6 13.2 143 62-233 14-159 (220)
120 4g8a_A TOLL-like receptor 4; l 97.9 7E-06 2.4E-10 76.9 4.5 104 116-233 466-573 (635)
121 4b8c_D Glucose-repressible alc 97.9 1.9E-05 6.4E-10 76.5 7.3 37 175-212 290-326 (727)
122 3goz_A Leucine-rich repeat-con 97.9 1.6E-05 5.6E-10 70.1 6.0 87 9-96 20-120 (362)
123 2ra8_A Uncharacterized protein 97.8 3.8E-05 1.3E-09 68.2 7.8 87 117-213 217-318 (362)
124 1z7x_W Ribonuclease inhibitor; 97.8 3.2E-06 1.1E-10 76.5 0.4 86 118-213 312-409 (461)
125 3cvr_A Invasion plasmid antige 97.8 0.00029 1E-08 66.2 13.3 161 34-233 60-236 (571)
126 3sb4_A Hypothetical leucine ri 97.8 0.0001 3.5E-09 64.0 9.5 52 177-232 249-302 (329)
127 1z7x_W Ribonuclease inhibitor; 97.8 2.8E-06 9.5E-11 76.9 -0.7 34 118-152 198-237 (461)
128 2o6r_A Variable lymphocyte rec 97.7 0.00045 1.5E-08 54.2 11.3 103 116-233 25-130 (177)
129 2xot_A Amphoterin-induced prot 97.7 0.0004 1.4E-08 61.1 12.1 129 62-220 21-153 (361)
130 3sb4_A Hypothetical leucine ri 97.7 0.00025 8.4E-09 61.6 10.5 57 174-233 269-327 (329)
131 1w8a_A SLIT protein; signaling 97.7 0.00018 6E-09 57.6 8.5 105 60-188 30-136 (192)
132 3goz_A Leucine-rich repeat-con 97.6 1.2E-05 4E-10 71.0 0.9 87 8-96 47-149 (362)
133 1ds9_A Outer arm dynein; leuci 97.6 3.8E-06 1.3E-10 67.8 -2.3 34 118-152 92-125 (198)
134 2wfh_A SLIT homolog 2 protein 97.6 0.00035 1.2E-08 56.1 9.4 79 60-152 32-112 (193)
135 2wfh_A SLIT homolog 2 protein 97.4 0.00077 2.6E-08 54.0 9.7 120 63-212 14-136 (193)
136 1ds9_A Outer arm dynein; leuci 97.4 2.6E-06 9E-11 68.7 -5.7 125 60-214 24-152 (198)
137 1dce_A Protein (RAB geranylger 97.4 0.00039 1.3E-08 65.3 8.0 91 113-220 457-550 (567)
138 1w8a_A SLIT protein; signaling 97.3 0.0013 4.3E-08 52.5 9.4 124 62-213 11-137 (192)
139 2r9u_A Variable lymphocyte rec 97.2 0.0016 5.5E-08 51.2 9.0 36 116-152 54-91 (174)
140 4b8c_D Glucose-repressible alc 97.2 0.00065 2.2E-08 65.6 7.6 102 115-233 220-322 (727)
141 3g39_A Variable lymphocyte rec 97.0 0.0031 1.1E-07 49.3 8.8 99 62-188 12-112 (170)
142 2ifg_A High affinity nerve gro 97.0 0.0023 7.9E-08 55.6 8.3 100 64-189 13-114 (347)
143 2r9u_A Variable lymphocyte rec 97.0 0.0016 5.6E-08 51.2 6.7 81 59-153 33-116 (174)
144 2ra8_A Uncharacterized protein 96.8 0.0017 5.7E-08 57.6 6.1 145 48-212 128-289 (362)
145 2ifg_A High affinity nerve gro 96.8 0.0072 2.5E-07 52.4 9.7 87 113-212 25-113 (347)
146 3g39_A Variable lymphocyte rec 96.7 0.012 4E-07 45.8 9.9 84 116-213 27-113 (170)
147 3un9_A NLR family member X1; l 96.1 0.00075 2.6E-08 59.9 -0.5 138 60-213 102-250 (372)
148 4fdw_A Leucine rich hypothetic 95.9 0.14 4.7E-06 45.7 13.5 60 177-240 322-383 (401)
149 4fdw_A Leucine rich hypothetic 95.6 0.43 1.5E-05 42.4 15.1 143 59-234 203-352 (401)
150 3un9_A NLR family member X1; l 94.6 0.002 6.8E-08 57.2 -3.1 159 12-189 73-250 (372)
151 3rw6_A Nuclear RNA export fact 89.2 0.46 1.6E-05 39.9 5.0 61 116-189 167-231 (267)
152 4fs7_A Uncharacterized protein 89.0 3.8 0.00013 35.7 11.2 55 177-235 319-374 (394)
153 1io0_A Tropomodulin; LRR prote 87.1 0.072 2.5E-06 42.0 -1.3 12 177-188 150-161 (185)
154 4gt6_A Cell surface protein; l 85.5 3.7 0.00013 35.8 9.0 52 177-232 310-362 (394)
155 3rw6_A Nuclear RNA export fact 82.5 0.48 1.6E-05 39.8 1.7 62 82-153 167-231 (267)
156 4h09_A Hypothetical leucine ri 81.0 22 0.00077 30.3 12.1 32 176-209 308-340 (379)
157 4gt6_A Cell surface protein; l 70.5 18 0.0006 31.3 8.5 35 174-210 330-365 (394)
158 4h09_A Hypothetical leucine ri 68.2 37 0.0013 28.9 10.1 33 176-209 284-317 (379)
159 4fs7_A Uncharacterized protein 65.3 3.2 0.00011 36.2 2.5 33 175-209 159-192 (394)
160 1io0_A Tropomodulin; LRR prote 61.1 7.8 0.00027 29.9 3.9 112 11-129 36-161 (185)
161 3rfe_A Platelet glycoprotein I 43.1 19 0.00064 26.2 3.2 12 117-128 53-64 (130)
162 3rfe_A Platelet glycoprotein I 33.6 42 0.0014 24.2 3.8 35 116-151 28-64 (130)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.52 E-value=2.8e-13 Score=119.15 Aligned_cols=198 Identities=20% Similarity=0.192 Sum_probs=119.7
Q ss_pred hhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEec----
Q 024866 28 ELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKI---- 103 (261)
Q Consensus 28 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~---- 103 (261)
.+..+++|++|++...... .+......+.+|+.|+++++. +..++ ..++.+++|+.|++++|..+..+..
T Consensus 99 ~l~~l~~L~~L~L~~n~l~---~lp~~~~~l~~L~~L~Ls~n~-l~~lp--~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 99 QAFRLSHLQHMTIDAAGLM---ELPDTMQQFAGLETLTLARNP-LRALP--ASIASLNRLRELSIRACPELTELPEPLAS 172 (328)
T ss_dssp CGGGGTTCSEEEEESSCCC---CCCSCGGGGTTCSEEEEESCC-CCCCC--GGGGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred hhhhCCCCCEEECCCCCcc---chhHHHhccCCCCEEECCCCc-cccCc--HHHhcCcCCCEEECCCCCCccccChhHhh
Confidence 3666778888888744322 222333345678888888763 34443 4677888888888887655443321
Q ss_pred ------------------ccccccccCCCCcCCCCCcEEEEecCCCCCCCC-ccccCCCCcEEEEecccccccccccccc
Q 024866 104 ------------------DYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT-FLVFAPNLKSLRLFDCGAMEEIISVGKI 164 (261)
Q Consensus 104 ------------------~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~ 164 (261)
........+...+.+++|+.|+++++ ++..++ .++.+++|++|++++|.....
T Consensus 173 ~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~------- 244 (328)
T 4fcg_A 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRN------- 244 (328)
T ss_dssp EC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCB-------
T ss_pred ccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhh-------
Confidence 11100000111234445555555544 233332 233445555555555443322
Q ss_pred cccCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCCCCccccCCceEEEcchhhhhhccc
Q 024866 165 AETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIRGYTGWWNRLQW 244 (261)
Q Consensus 165 ~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~~~~~ww~~~~w 244 (261)
++..+..+++|+.|++.++..+..++.....+++|+.|++++|+.+..+|..... ...++++..+..+...+.+
T Consensus 245 -----~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~-L~~L~~l~l~~~~~~~l~~ 318 (328)
T 4fcg_A 245 -----YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ-LPANCIILVPPHLQAQLDQ 318 (328)
T ss_dssp -----CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG-SCTTCEEECCGGGSCC---
T ss_pred -----hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh-ccCceEEeCCHHHHHHHhh
Confidence 2345677899999999999988888877778999999999999999999976544 4778888877665555544
Q ss_pred C
Q 024866 245 E 245 (261)
Q Consensus 245 ~ 245 (261)
.
T Consensus 319 ~ 319 (328)
T 4fcg_A 319 H 319 (328)
T ss_dssp -
T ss_pred h
Confidence 4
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.35 E-value=4e-12 Score=111.79 Aligned_cols=190 Identities=18% Similarity=0.168 Sum_probs=129.9
Q ss_pred eeeEeeeccccccccCCCcchh-hhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCccccc-----
Q 024866 5 GWFNFHEASEESVLFGGGEVLV-QELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDA----- 78 (261)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l-~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~----- 78 (261)
++++ ++..+..++++.....+ ..+..+++|+.|++...... .+......+.+|+.|++++|.....++..
T Consensus 99 ~l~~-l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~ 174 (328)
T 4fcg_A 99 QAFR-LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR---ALPASIASLNRLRELSIRACPELTELPEPLASTD 174 (328)
T ss_dssp CGGG-GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC---CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC
T ss_pred hhhh-CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc---cCcHHHhcCcCCCEEECCCCCCccccChhHhhcc
Confidence 3443 66677777777654433 45778888999988854322 22223333457888999888766655420
Q ss_pred --ccccccCCCCeEEEeccC------------CcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC-ccccCCC
Q 024866 79 --TAFADLNHLNELYIFKGI------------ELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT-FLVFAPN 143 (261)
Q Consensus 79 --~~l~~l~~L~~L~i~~c~------------~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~-~l~~lp~ 143 (261)
..++.+++|+.|+++++. +|+.+.+......+.++..+.+++|+.|++++|.....++ .++.+++
T Consensus 175 ~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 254 (328)
T 4fcg_A 175 ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254 (328)
T ss_dssp -CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCC
T ss_pred chhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCC
Confidence 113347888888887653 3344433332222223335678999999999997776654 4578999
Q ss_pred CcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeec
Q 024866 144 LKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVL 210 (261)
Q Consensus 144 L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~ 210 (261)
|++|++++|..+..+.. .+..+++|+.|++.+|+.+..++.....+++|+.+.+.
T Consensus 255 L~~L~L~~n~~~~~~p~------------~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 255 LKRLILKDCSNLLTLPL------------DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CCEEECTTCTTCCBCCT------------TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCEEECCCCCchhhcch------------hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 99999999987655432 45678999999999999999998877788888888664
No 3
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.19 E-value=9.8e-11 Score=106.98 Aligned_cols=202 Identities=18% Similarity=0.156 Sum_probs=109.0
Q ss_pred eccccccccCCCcchh--hhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCC
Q 024866 11 EASEESVLFGGGEVLV--QELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLN 88 (261)
Q Consensus 11 ~~~~~~~~~~~~~~~l--~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~ 88 (261)
+..+..++++.....+ ..+..+++|+.|++.......+. ......+.+|+.|+|+++ .+..++. ..++.+++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE--VGAFNGLASLNTLELFDN-WLTVIPS-GAFEYLSKLR 150 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSS-CCSBCCT-TTSSSCTTCC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC--hhhccCcccCCEEECCCC-cCCccCh-hhhcccCCCC
Confidence 3455666666654433 55677777777777643221110 011122346777777765 3444433 3456666777
Q ss_pred eEEEeccCCcceEe--------------cccccccccCC--CCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecc
Q 024866 89 ELYIFKGIELEELK--------------IDYTEIVRKRR--EPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDC 152 (261)
Q Consensus 89 ~L~i~~c~~Le~l~--------------~~~~~~~~~~p--~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C 152 (261)
+|+++++. +..+. +........++ ....+++|+.|+++++ +++.++.+..+++|++|+++++
T Consensus 151 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 151 ELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGN 228 (452)
T ss_dssp EEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTS
T ss_pred EEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccccccccccccEEECcCC
Confidence 77666543 22221 11000000001 1234555666666555 4555544455566666666654
Q ss_pred cccccccccccccccCcccCCcccCCcccEEeccCCcccccccCC-CccCCccceeeeccCccCCCCCCCCccccCCceE
Q 024866 153 GAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWK-PLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFV 231 (261)
Q Consensus 153 ~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~ 231 (261)
. +..+. +..+..+++|+.|++.+.. ++.+... ...+++|+.|+++++ +++.+|........+|+.
T Consensus 229 ~-l~~~~-----------~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 229 H-FPEIR-----------PGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVE 294 (452)
T ss_dssp C-CSEEC-----------GGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCE
T ss_pred c-CcccC-----------cccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCE
Confidence 2 22221 2245667889999988864 5555433 345789999999988 777888665544455555
Q ss_pred E
Q 024866 232 I 232 (261)
Q Consensus 232 ~ 232 (261)
+
T Consensus 295 L 295 (452)
T 3zyi_A 295 L 295 (452)
T ss_dssp E
T ss_pred E
Confidence 4
No 4
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.18 E-value=1.4e-10 Score=105.68 Aligned_cols=204 Identities=17% Similarity=0.160 Sum_probs=111.6
Q ss_pred eccccccccCCCcchh--hhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCC
Q 024866 11 EASEESVLFGGGEVLV--QELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLN 88 (261)
Q Consensus 11 ~~~~~~~~~~~~~~~l--~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~ 88 (261)
+..+..++++.....+ ..+..+++|+.|++.......+. ......+.+|+.|+|+++ .+..++. ..+..+++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~--~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~ 139 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE--IGAFNGLANLNTLELFDN-RLTTIPN-GAFVYLSKLK 139 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEEC--GGGGTTCSSCCEEECCSS-CCSSCCT-TTSCSCSSCC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccC--hhhccCCccCCEEECCCC-cCCeeCH-hHhhccccCc
Confidence 4455566666554333 45667777777777643221111 011112346777777765 4444433 3456666777
Q ss_pred eEEEeccC-------------CcceEecccccccccCC--CCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEeccc
Q 024866 89 ELYIFKGI-------------ELEELKIDYTEIVRKRR--EPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCG 153 (261)
Q Consensus 89 ~L~i~~c~-------------~Le~l~~~~~~~~~~~p--~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~ 153 (261)
.|+++++. +|+.+.+........++ ....+++|+.|+++++ +++.++.+..+++|++|+++++
T Consensus 140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N- 217 (440)
T 3zyj_A 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGN- 217 (440)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTS-
T ss_pred eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCEEECCCC-
Confidence 77766543 12222111100000001 1234566666666666 4555555556666777766665
Q ss_pred ccccccccccccccCcccCCcccCCcccEEeccCCcccccccCC-CccCCccceeeeccCccCCCCCCCCccccCCceEE
Q 024866 154 AMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWK-PLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVI 232 (261)
Q Consensus 154 ~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 232 (261)
.+..+. +..+..+++|+.|++.+.. ++.+... ...+++|+.|+++++ +++.+|.........|+.+
T Consensus 218 ~l~~~~-----------~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 284 (440)
T 3zyj_A 218 HLSAIR-----------PGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERI 284 (440)
T ss_dssp CCCEEC-----------TTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEE
T ss_pred ccCccC-----------hhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEE
Confidence 333322 1245667888999888764 6666543 345789999999887 6777776655444555554
Q ss_pred E
Q 024866 233 R 233 (261)
Q Consensus 233 ~ 233 (261)
.
T Consensus 285 ~ 285 (440)
T 3zyj_A 285 H 285 (440)
T ss_dssp E
T ss_pred E
Confidence 3
No 5
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.17 E-value=3.1e-10 Score=94.70 Aligned_cols=112 Identities=15% Similarity=0.053 Sum_probs=63.5
Q ss_pred CCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCC
Q 024866 34 YLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRR 113 (261)
Q Consensus 34 ~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p 113 (261)
+|+.|++.......+.. ......++|+.|+++++..+..++. ..+..+++|++|++++|..+..+..+.
T Consensus 32 ~l~~L~l~~n~l~~i~~--~~~~~l~~L~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~l~~~n~l~~i~~~~-------- 100 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPS--HAFSNLPNISRIYVSIDVTLQQLES-HSFYNLSKVTHIEIRNTRNLTYIDPDA-------- 100 (239)
T ss_dssp TCCEEEEESCCCSEECT--TTTTTCTTCCEEEEECCSSCCEECT-TTEESCTTCCEEEEEEETTCCEECTTS--------
T ss_pred cccEEEEeCCcceEECH--HHccCCCCCcEEeCCCCCCcceeCH-hHcCCCcCCcEEECCCCCCeeEcCHHH--------
Confidence 66677776433221111 0112245677888887655666643 456777788888887766666552111
Q ss_pred CCcCCCCCcEEEEecCCCCCCCCccccCCCCc---EEEEecccccccc
Q 024866 114 EPFVFRSLHRVIIGECHKLKDVTFLVFAPNLK---SLRLFDCGAMEEI 158 (261)
Q Consensus 114 ~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~---~L~i~~C~~L~~i 158 (261)
...+++|+.|++.++ +++.++.+..+++|+ +|+++++..++.+
T Consensus 101 -f~~l~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i 146 (239)
T 2xwt_C 101 -LKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFILEITDNPYMTSI 146 (239)
T ss_dssp -EECCTTCCEEEEEEE-CCCSCCCCTTCCBCCSEEEEEEESCTTCCEE
T ss_pred -hCCCCCCCEEeCCCC-CCccccccccccccccccEEECCCCcchhhc
Confidence 134667777777766 355554444555555 7777766444443
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.13 E-value=2.5e-10 Score=100.23 Aligned_cols=81 Identities=17% Similarity=0.131 Sum_probs=44.6
Q ss_pred eEeeeccccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCC
Q 024866 7 FNFHEASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNH 86 (261)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~ 86 (261)
|+.++..+..++++.....+..+..+++|+.|++.......++. ....++|++|+++++. +..+ +.+..+++
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~l~~n~-i~~~---~~~~~l~~ 133 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA----LQNLTNLRELYLNEDN-ISDI---SPLANLTK 133 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG----GTTCTTCSEEECTTSC-CCCC---GGGTTCTT
T ss_pred hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH----HcCCCcCCEEECcCCc-ccCc---hhhccCCc
Confidence 44566677777777666666667777777777776443322211 1223456666666543 2333 22455555
Q ss_pred CCeEEEecc
Q 024866 87 LNELYIFKG 95 (261)
Q Consensus 87 L~~L~i~~c 95 (261)
|+.|++++|
T Consensus 134 L~~L~l~~n 142 (347)
T 4fmz_A 134 MYSLNLGAN 142 (347)
T ss_dssp CCEEECTTC
T ss_pred eeEEECCCC
Confidence 555555554
No 7
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.13 E-value=2.3e-10 Score=99.49 Aligned_cols=183 Identities=15% Similarity=0.179 Sum_probs=92.3
Q ss_pred eccccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeE
Q 024866 11 EASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNEL 90 (261)
Q Consensus 11 ~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L 90 (261)
+..+..++++.....+..++.+++|+.|++.......+.. ...+.+|+.|+++++. +..+ +.+..+++|+.|
T Consensus 41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~-l~~~---~~~~~l~~L~~L 112 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP----LKNLTKITELELSGNP-LKNV---SAIAGLQSIKTL 112 (308)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCC-CSCC---GGGTTCTTCCEE
T ss_pred CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCc-CCCc---hhhcCCCCCCEE
Confidence 4445555666555556666677777777776443222222 1223466777777653 3444 345666777777
Q ss_pred EEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccccc----
Q 024866 91 YIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAE---- 166 (261)
Q Consensus 91 ~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~---- 166 (261)
+++++. +..+ +....+++|+.|+++++ ++..+..+..+++|++|++++| .+..+........
T Consensus 113 ~l~~n~-l~~~-----------~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L 178 (308)
T 1h6u_A 113 DLTSTQ-ITDV-----------TPLAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTL 178 (308)
T ss_dssp ECTTSC-CCCC-----------GGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEE
T ss_pred ECCCCC-CCCc-----------hhhcCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCC-cCCCChhhcCCCCCCEE
Confidence 766653 2111 11234455555555554 3444433444555555555544 2222111000000
Q ss_pred ------cCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCC
Q 024866 167 ------TPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPP 219 (261)
Q Consensus 167 ------~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp 219 (261)
.++++ .+..+++|+.|++.++. ++.+.. ...+++|+.|.+++++ +...|
T Consensus 179 ~l~~n~l~~~~-~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 179 KADDNKISDIS-PLASLPNLIEVHLKNNQ-ISDVSP-LANTSNLFIVTLTNQT-ITNQP 233 (308)
T ss_dssp ECCSSCCCCCG-GGGGCTTCCEEECTTSC-CCBCGG-GTTCTTCCEEEEEEEE-EECCC
T ss_pred ECCCCccCcCh-hhcCCCCCCEEEccCCc-cCcccc-ccCCCCCCEEEccCCe-eecCC
Confidence 00011 13456777777777763 555542 3457788888887775 34444
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.09 E-value=1.4e-10 Score=101.91 Aligned_cols=176 Identities=16% Similarity=0.114 Sum_probs=113.2
Q ss_pred eEeeeccccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCC
Q 024866 7 FNFHEASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNH 86 (261)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~ 86 (261)
|..++..+..++++.....+..+..+++|+.|++.......+.. .....+|+.|.++++. +..+ ..+..+++
T Consensus 151 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~-l~~~---~~~~~~~~ 222 (347)
T 4fmz_A 151 LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQ-ITDI---TPVANMTR 222 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSC-CCCC---GGGGGCTT
T ss_pred hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc----ccCCCccceeecccCC-CCCC---chhhcCCc
Confidence 45566777788888777777778888999999887543322222 2234578888888863 3444 23678888
Q ss_pred CCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccccc
Q 024866 87 LNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAE 166 (261)
Q Consensus 87 L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~ 166 (261)
|+.|++++|. +..+ +....+++|+.|++.+| .+.++..+..+++|++|++++| .+..+.
T Consensus 223 L~~L~l~~n~-l~~~-----------~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~~------- 281 (347)
T 4fmz_A 223 LNSLKIGNNK-ITDL-----------SPLANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSN-QISDIS------- 281 (347)
T ss_dssp CCEEECCSSC-CCCC-----------GGGTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCG-------
T ss_pred CCEEEccCCc-cCCC-----------cchhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCC-ccCCCh-------
Confidence 9999988875 2211 11356778888888877 5666666667788888888876 333321
Q ss_pred cCcccCCcccCCcccEEeccCCcccccccC-CCccCCccceeeeccCccCCCCC
Q 024866 167 TPEMMGHISPFENLQSLDLDDLPHLKSIFW-KPLPFTHLKKMAVLMCDQLRKPP 219 (261)
Q Consensus 167 ~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp 219 (261)
.+..+++|+.|++.+++ +..... ....+++|+.|.+++|+ ++.++
T Consensus 282 ------~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~ 327 (347)
T 4fmz_A 282 ------VLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNH-ITDIR 327 (347)
T ss_dssp ------GGGGCTTCSEEECCSSC-CCGGGHHHHHTCTTCSEEECCSSS-CCCCG
T ss_pred ------hhcCCCCCCEEECcCCc-CCCcChhHhhccccCCEEEccCCc-ccccc
Confidence 23456777777777764 443322 23346777777777776 44443
No 9
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.05 E-value=1.2e-09 Score=100.04 Aligned_cols=133 Identities=20% Similarity=0.171 Sum_probs=66.0
Q ss_pred eeccccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCe
Q 024866 10 HEASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNE 89 (261)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~ 89 (261)
++..+..++++.....+..+..+++|+.|.+.......... .....+|+.|+++++. +..+ +.+..+++|+.
T Consensus 176 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~ 247 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQ-LKDI---GTLASLTNLTD 247 (466)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSC-CCCC---GGGGGCTTCSE
T ss_pred CCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCC-cccc---hhhhcCCCCCE
Confidence 34455555555555555555666666666655332211111 1123456666666653 3333 34556666777
Q ss_pred EEEeccC-----------CcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecc
Q 024866 90 LYIFKGI-----------ELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDC 152 (261)
Q Consensus 90 L~i~~c~-----------~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C 152 (261)
|++++|. .|+.+.+......+ .+....+++|+.|++.+| ++.++..+..+++|++|++++|
T Consensus 248 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 248 LDLANNQISNLAPLSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFN 319 (466)
T ss_dssp EECCSSCCCCCGGGTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSS
T ss_pred EECCCCccccchhhhcCCCCCEEECCCCccCc-cccccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCC
Confidence 6666542 23333332221111 111345566666666665 4555544555666666666665
No 10
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.05 E-value=1.1e-09 Score=93.45 Aligned_cols=84 Identities=18% Similarity=0.097 Sum_probs=41.9
Q ss_pred cCCCCCcEEEEecCCCCCCCCc--cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccccc
Q 024866 116 FVFRSLHRVIIGECHKLKDVTF--LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKS 193 (261)
Q Consensus 116 ~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~ 193 (261)
+.+++|+.|++.++ +++.+.. ++.+++|++|++++|. +..+.. ..+..+++|+.|++.++. ++.
T Consensus 130 ~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-----------~~~~~l~~L~~L~L~~N~-l~~ 195 (272)
T 3rfs_A 130 DKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPE-----------GVFDKLTQLKDLRLYQNQ-LKS 195 (272)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-----------TTTTTCTTCCEEECCSSC-CSC
T ss_pred ccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCC-cCccCH-----------HHhcCCccCCEEECCCCc-CCc
Confidence 34555566665555 3444432 3445556666655542 222211 123345666666666653 444
Q ss_pred ccCC-CccCCccceeeeccCc
Q 024866 194 IFWK-PLPFTHLKKMAVLMCD 213 (261)
Q Consensus 194 i~~~-~~~~p~L~~L~i~~C~ 213 (261)
+... ...+++|+.|.+.+++
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSC
T ss_pred cCHHHHhCCcCCCEEEccCCC
Confidence 4432 2345666666666654
No 11
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.04 E-value=2.1e-09 Score=89.68 Aligned_cols=191 Identities=15% Similarity=0.072 Sum_probs=130.9
Q ss_pred eccccccccCCCcchhh--hhhcccCCceEEEEEcc-hHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCC
Q 024866 11 EASEESVLFGGGEVLVQ--ELLGLKYLEVLELTLGS-YQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHL 87 (261)
Q Consensus 11 ~~~~~~~~~~~~~~~l~--eL~~L~~L~~L~i~~~~-~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L 87 (261)
+..+..++++.....+. .+..+++|+.|++.... ...+.. .......+|++|++++|..+..++. ..+..+++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~--~~f~~l~~L~~L~l~~~n~l~~i~~-~~f~~l~~L 107 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES--HSFYNLSKVTHIEIRNTRNLTYIDP-DALKELPLL 107 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECT--TTEESCTTCCEEEEEEETTCCEECT-TSEECCTTC
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCH--hHcCCCcCCcEEECCCCCCeeEcCH-HHhCCCCCC
Confidence 34566666666544443 47788999999998543 222111 1122345899999999888888864 567889999
Q ss_pred CeEEEeccCCcceEecccccccccCCCCcCCCCCc---EEEEecCCCCCCCCc--cccCCCCc-EEEEeccccccccccc
Q 024866 88 NELYIFKGIELEELKIDYTEIVRKRREPFVFRSLH---RVIIGECHKLKDVTF--LVFAPNLK-SLRLFDCGAMEEIISV 161 (261)
Q Consensus 88 ~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~---~L~l~~C~~l~~l~~--l~~lp~L~-~L~i~~C~~L~~i~~~ 161 (261)
+.|+++++. +..+ |....+++|+ .|+++++++++.++. +..+++|+ +|+++++ .++.+..
T Consensus 108 ~~L~l~~n~-l~~l-----------p~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~- 173 (239)
T 2xwt_C 108 KFLGIFNTG-LKMF-----------PDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQG- 173 (239)
T ss_dssp CEEEEEEEC-CCSC-----------CCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECT-
T ss_pred CEEeCCCCC-Cccc-----------cccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCH-
Confidence 999999875 3322 3235566776 999999877877643 56789999 9999886 3444332
Q ss_pred ccccccCcccCCcccCCcccEEeccCCcccccccCCC-ccC-CccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866 162 GKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKP-LPF-THLKKMAVLMCDQLRKPPLDSNSAKERKFVIR 233 (261)
Q Consensus 162 ~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~-~~~-p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 233 (261)
.....++|+.|++.+.+.++.+.... ..+ ++|+.|+++++ +++.+|... ...++..+
T Consensus 174 -----------~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~---~~~L~~L~ 232 (239)
T 2xwt_C 174 -----------YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKG---LEHLKELI 232 (239)
T ss_dssp -----------TTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCTT---CTTCSEEE
T ss_pred -----------hhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChhH---hccCceee
Confidence 11223789999999988888886543 346 89999999984 577888763 34555443
No 12
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.04 E-value=8.4e-10 Score=98.63 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=64.7
Q ss_pred CCCCcEEEEecCCCCCCCCccccCCCCcEEEEeccccccccccccc--cc----------ccCcccCCcccCCcccEEec
Q 024866 118 FRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGK--IA----------ETPEMMGHISPFENLQSLDL 185 (261)
Q Consensus 118 ~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~--~~----------~~~~~~~~~~~~p~L~~L~L 185 (261)
+++|+.|++.++ ++++..++..+++|++|+++++. ++.+..... .. ..++++.....+++|+.|++
T Consensus 225 ~~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L 302 (390)
T 3o6n_A 225 NVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL 302 (390)
T ss_dssp CSSCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEEC
T ss_pred cccccEEECCCC-CCcccHHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEEC
Confidence 456677777666 45555666778888888888763 333321100 00 01122333456778888888
Q ss_pred cCCcccccccCCCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866 186 DDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR 233 (261)
Q Consensus 186 ~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 233 (261)
.++ +++.++.....+++|+.|.+++++ ++.+|... ...|+.+.
T Consensus 303 ~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~---~~~L~~L~ 345 (390)
T 3o6n_A 303 SHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKLST---HHTLKNLT 345 (390)
T ss_dssp CSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCT---TCCCSEEE
T ss_pred CCC-cceecCccccccCcCCEEECCCCc-cceeCchh---hccCCEEE
Confidence 877 466665555567888888888875 56666433 34555543
No 13
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.03 E-value=1.3e-09 Score=88.51 Aligned_cols=130 Identities=14% Similarity=0.176 Sum_probs=72.1
Q ss_pred cceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCC--CC
Q 024866 59 SCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKD--VT 136 (261)
Q Consensus 59 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~--l~ 136 (261)
.+|+.|+++++ ++..+ +.+..+++|+.|++++| .+..+ +....+++|+.|++.++ ++.+ ..
T Consensus 44 ~~L~~L~l~~n-~i~~l---~~l~~l~~L~~L~l~~n-~~~~~-----------~~l~~l~~L~~L~l~~n-~l~~~~~~ 106 (197)
T 4ezg_A 44 NSLTYITLANI-NVTDL---TGIEYAHNIKDLTINNI-HATNY-----------NPISGLSNLERLRIMGK-DVTSDKIP 106 (197)
T ss_dssp HTCCEEEEESS-CCSCC---TTGGGCTTCSEEEEESC-CCSCC-----------GGGTTCTTCCEEEEECT-TCBGGGSC
T ss_pred CCccEEeccCC-CccCh---HHHhcCCCCCEEEccCC-CCCcc-----------hhhhcCCCCCEEEeECC-ccCcccCh
Confidence 35667777664 33333 24566677777777766 23221 12245667777777765 4443 33
Q ss_pred ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCC
Q 024866 137 FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLR 216 (261)
Q Consensus 137 ~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~ 216 (261)
.+..+++|++|++++|. +.... +..+..+++|+.|++.++..+..++ ....+++|+.|.+++|. ++
T Consensus 107 ~l~~l~~L~~L~Ls~n~-i~~~~-----------~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~ 172 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSA-HDDSI-----------LTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VH 172 (197)
T ss_dssp CCTTCTTCCEEECCSSB-CBGGG-----------HHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CC
T ss_pred hhcCCCCCCEEEecCCc-cCcHh-----------HHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-Cc
Confidence 44566777777777653 22111 0123446677777777766555554 24456677777776663 44
Q ss_pred CCC
Q 024866 217 KPP 219 (261)
Q Consensus 217 ~lp 219 (261)
.++
T Consensus 173 ~~~ 175 (197)
T 4ezg_A 173 DYR 175 (197)
T ss_dssp CCT
T ss_pred ChH
Confidence 444
No 14
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.02 E-value=1.3e-09 Score=92.82 Aligned_cols=179 Identities=18% Similarity=0.134 Sum_probs=119.5
Q ss_pred CcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceE
Q 024866 22 GEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEEL 101 (261)
Q Consensus 22 ~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l 101 (261)
.......+..+++|+.|.+.......+.. ...+++|+.|+++++. +..+ +.++.+++|++|+++++. +..+
T Consensus 30 ~~~~~~~~~~l~~L~~L~l~~~~i~~~~~----l~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~L~~n~-l~~~ 100 (272)
T 3rfs_A 30 SVTDAVTQNELNSIDQIIANNSDIKSVQG----IQYLPNVRYLALGGNK-LHDI---SALKELTNLTYLILTGNQ-LQSL 100 (272)
T ss_dssp CTTSEECHHHHTTCCEEECTTSCCCCCTT----GGGCTTCCEEECTTSC-CCCC---GGGTTCTTCCEEECTTSC-CCCC
T ss_pred ccccccccccccceeeeeeCCCCcccccc----cccCCCCcEEECCCCC-CCCc---hhhcCCCCCCEEECCCCc-cCcc
Confidence 33444555666777777776444332222 2234689999999874 4444 467889999999999874 3322
Q ss_pred ecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc--cccCCCCcEEEEecccccccccccccccccCcccCCcccCCc
Q 024866 102 KIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF--LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFEN 179 (261)
Q Consensus 102 ~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~ 179 (261)
.. ...+.+++|+.|++.++ ++..+.. +..+++|++|++++| .+..+.. ..+..+++
T Consensus 101 ~~---------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-----------~~~~~l~~ 158 (272)
T 3rfs_A 101 PN---------GVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPK-----------GVFDKLTN 158 (272)
T ss_dssp CT---------TTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-----------TTTTTCTT
T ss_pred Ch---------hHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCC-ccCccCH-----------HHhccCcc
Confidence 10 11356889999999988 5766643 567899999999987 4443332 13456889
Q ss_pred ccEEeccCCcccccccCCC-ccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866 180 LQSLDLDDLPHLKSIFWKP-LPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR 233 (261)
Q Consensus 180 L~~L~L~~~~~L~~i~~~~-~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 233 (261)
|+.|++.++. ++.+.... ..+++|+.|.+++|. ++.+|........+|+.+.
T Consensus 159 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~ 211 (272)
T 3rfs_A 159 LTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIW 211 (272)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCCC-cCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEE
Confidence 9999999874 77776543 468999999999884 6666654444445666654
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.01 E-value=9.9e-10 Score=93.97 Aligned_cols=180 Identities=16% Similarity=0.114 Sum_probs=95.7
Q ss_pred ccccccccCCCcchh--hhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCe
Q 024866 12 ASEESVLFGGGEVLV--QELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNE 89 (261)
Q Consensus 12 ~~~~~~~~~~~~~~l--~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~ 89 (261)
..+..++++.....+ ..+..+++|+.|++.......+. ......+++|+.|+++++..+..++. ..+..+++|+.
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~l~~~~~-~~~~~l~~L~~ 109 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID--AAAFTGLALLEQLDLSDNAQLRSVDP-ATFHGLGRLHT 109 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSCTTCCCCCT-TTTTTCTTCCE
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC--HhhcCCccCCCEEeCCCCCCccccCH-HHhcCCcCCCE
Confidence 344444444433222 23555566666665532211100 11111234566666666544444433 44556666666
Q ss_pred EEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc--cccCCCCcEEEEeccccccccccccccccc
Q 024866 90 LYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF--LVFAPNLKSLRLFDCGAMEEIISVGKIAET 167 (261)
Q Consensus 90 L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~ 167 (261)
|+++++.- ..+. ......+++|+.|++.++ ++..+.. ++.+++|++|+++++ .++.+..
T Consensus 110 L~l~~n~l-~~~~---------~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~------- 170 (285)
T 1ozn_A 110 LHLDRCGL-QELG---------PGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVPE------- 170 (285)
T ss_dssp EECTTSCC-CCCC---------TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEECT-------
T ss_pred EECCCCcC-CEEC---------HhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCC-cccccCH-------
Confidence 66665541 1110 011245677777877776 4555432 456777888877775 3333321
Q ss_pred CcccCCcccCCcccEEeccCCccccccc-CCCccCCccceeeeccCccCCCCC
Q 024866 168 PEMMGHISPFENLQSLDLDDLPHLKSIF-WKPLPFTHLKKMAVLMCDQLRKPP 219 (261)
Q Consensus 168 ~~~~~~~~~~p~L~~L~L~~~~~L~~i~-~~~~~~p~L~~L~i~~C~~L~~lp 219 (261)
..+..+++|+.|++.+.. +..+. .....+++|+.|+++++ +++.+|
T Consensus 171 ----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~ 217 (285)
T 1ozn_A 171 ----RAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFAN-NLSALP 217 (285)
T ss_dssp ----TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred ----HHhcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCC-cCCcCC
Confidence 134557888888888765 55553 23445788888888887 455555
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.01 E-value=3.7e-09 Score=96.80 Aligned_cols=35 Identities=23% Similarity=0.158 Sum_probs=19.3
Q ss_pred eeeccccccccCCCcchhhhhhcccCCceEEEEEc
Q 024866 9 FHEASEESVLFGGGEVLVQELLGLKYLEVLELTLG 43 (261)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~ 43 (261)
.++..+..++++.....+..+..+++|+.|++...
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n 144 (466)
T 1o6v_A 110 NLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 144 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEE
T ss_pred CCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCC
Confidence 34455555555555444445566666666666543
No 17
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.01 E-value=7.1e-10 Score=95.70 Aligned_cols=164 Identities=17% Similarity=0.201 Sum_probs=91.3
Q ss_pred cccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEE
Q 024866 13 SEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYI 92 (261)
Q Consensus 13 ~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i 92 (261)
.+..++++.....+..++.+++|+.|++.......+.. ...+.+|+.|+++++. +..+ +.+..+++|+.|++
T Consensus 48 L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~----l~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 48 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP----LANLKNLGWLFLDENK-VKDL---SSLKDLKKLKSLSL 119 (291)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSC-CCCG---GGGTTCTTCCEEEC
T ss_pred ccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc----cccCCCCCEEECCCCc-CCCC---hhhccCCCCCEEEC
Confidence 34444444444444455555555555555332221111 1112345555555542 2333 23555556666665
Q ss_pred eccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccccccCcccC
Q 024866 93 FKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMG 172 (261)
Q Consensus 93 ~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~ 172 (261)
+++. +..+ +....+++|+.|+++++ +++++..+..+++|++|++++| .+..+.
T Consensus 120 ~~n~-i~~~-----------~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N-~l~~~~------------- 172 (291)
T 1h6t_A 120 EHNG-ISDI-----------NGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDN-QISDIV------------- 172 (291)
T ss_dssp TTSC-CCCC-----------GGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSS-CCCCCG-------------
T ss_pred CCCc-CCCC-----------hhhcCCCCCCEEEccCC-cCCcchhhccCCCCCEEEccCC-ccccch-------------
Confidence 5543 2211 22245677777777776 5666655666777777777776 233322
Q ss_pred CcccCCcccEEeccCCcccccccCCCccCCccceeeeccCc
Q 024866 173 HISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCD 213 (261)
Q Consensus 173 ~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~ 213 (261)
.+..+++|+.|++.++ +++.+.. ...+++|+.|++++++
T Consensus 173 ~l~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 173 PLAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp GGTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred hhcCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCCc
Confidence 1456788999999886 4666543 4567899999998874
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.00 E-value=3e-09 Score=96.60 Aligned_cols=59 Identities=20% Similarity=0.146 Sum_probs=42.8
Q ss_pred CcccCCcccEEeccCCcccccccC-CCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866 173 HISPFENLQSLDLDDLPHLKSIFW-KPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR 233 (261)
Q Consensus 173 ~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 233 (261)
.+..+++|+.|++.++. ++.+.. ....+++|+.|+++++ +++.+|........+|+.+.
T Consensus 342 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 401 (455)
T 3v47_A 342 MFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIW 401 (455)
T ss_dssp GGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred HhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEE
Confidence 45668899999998874 666633 3456899999999996 57788876555556677654
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.00 E-value=1.5e-09 Score=99.39 Aligned_cols=184 Identities=20% Similarity=0.188 Sum_probs=89.0
Q ss_pred eccccccccCCCcchh--hhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCC
Q 024866 11 EASEESVLFGGGEVLV--QELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLN 88 (261)
Q Consensus 11 ~~~~~~~~~~~~~~~l--~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~ 88 (261)
+..+..++++.....+ ..+..+++|+.|++.......+. ......+.+|+.|+|+++ .+..++. ..+..+++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~ 107 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE--PGAFNNLFNLRTLGLRSN-RLKLIPL-GVFTGLSNLT 107 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSS-CCCSCCT-TSSTTCTTCC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeC--hhhhhCCccCCEEECCCC-cCCccCc-ccccCCCCCC
Confidence 3455666666654443 45677777777777632211110 111222346777777764 3444433 3456667777
Q ss_pred eEEEeccC-------------CcceEecccccccccCC-CCcCCCCCcEEEEecCCCCCCCCc--cccCCCCcEEEEecc
Q 024866 89 ELYIFKGI-------------ELEELKIDYTEIVRKRR-EPFVFRSLHRVIIGECHKLKDVTF--LVFAPNLKSLRLFDC 152 (261)
Q Consensus 89 ~L~i~~c~-------------~Le~l~~~~~~~~~~~p-~~~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~L~i~~C 152 (261)
.|+++++. +|+.+.+.........+ ....+++|+.|++.++ +++.+.. +..+++|++|+++++
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESC
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCC
Confidence 77766542 23333222211101111 2345667777777766 4555432 345666777766665
Q ss_pred cccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeecc
Q 024866 153 GAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLM 211 (261)
Q Consensus 153 ~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~ 211 (261)
. +..+.. ..+..+++|+.|++.+++.+..++.......+|+.|.+++
T Consensus 187 ~-i~~~~~-----------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 233 (477)
T 2id5_A 187 N-INAIRD-----------YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233 (477)
T ss_dssp C-CCEECT-----------TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEES
T ss_pred c-CcEeCh-----------hhcccCcccceeeCCCCccccccCcccccCccccEEECcC
Confidence 3 222211 1233455566666655554444433322233344444333
No 20
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.00 E-value=5.2e-09 Score=84.84 Aligned_cols=150 Identities=17% Similarity=0.176 Sum_probs=106.5
Q ss_pred hcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEeccccccc
Q 024866 30 LGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIV 109 (261)
Q Consensus 30 ~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~ 109 (261)
..+++|+.|++.......+.. ...+++|+.|+++++ .+..+ +.+..+++|+.|+++++. +...
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~----l~~l~~L~~L~l~~n-~~~~~---~~l~~l~~L~~L~l~~n~-l~~~-------- 103 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTG----IEYAHNIKDLTINNI-HATNY---NPISGLSNLERLRIMGKD-VTSD-------- 103 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTT----GGGCTTCSEEEEESC-CCSCC---GGGTTCTTCCEEEEECTT-CBGG--------
T ss_pred hhcCCccEEeccCCCccChHH----HhcCCCCCEEEccCC-CCCcc---hhhhcCCCCCEEEeECCc-cCcc--------
Confidence 446778888888554333332 233468999999998 54555 567889999999999875 2210
Q ss_pred ccCCCCcCCCCCcEEEEecCCCCCC--CCccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccC
Q 024866 110 RKRREPFVFRSLHRVIIGECHKLKD--VTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDD 187 (261)
Q Consensus 110 ~~~p~~~~~~~L~~L~l~~C~~l~~--l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~ 187 (261)
.+.....+++|+.|++++| ++.+ +..+..+++|++|++++|..+..+. .+..+++|+.|++.+
T Consensus 104 -~~~~l~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-------------~l~~l~~L~~L~l~~ 168 (197)
T 4ezg_A 104 -KIPNLSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDIM-------------PLKTLPELKSLNIQF 168 (197)
T ss_dssp -GSCCCTTCTTCCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-------------GGGGCSSCCEEECTT
T ss_pred -cChhhcCCCCCCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCccccH-------------hhcCCCCCCEEECCC
Confidence 1233467899999999998 5665 3345789999999999987555442 345689999999998
Q ss_pred CcccccccCCCccCCccceeeeccCc
Q 024866 188 LPHLKSIFWKPLPFTHLKKMAVLMCD 213 (261)
Q Consensus 188 ~~~L~~i~~~~~~~p~L~~L~i~~C~ 213 (261)
+. ++.+. ....+++|+.|.+++.+
T Consensus 169 n~-i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 169 DG-VHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp BC-CCCCT-TGGGCSSCCEEEECBC-
T ss_pred CC-CcChH-HhccCCCCCEEEeeCcc
Confidence 75 66654 45568999999887754
No 21
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.00 E-value=7.9e-10 Score=96.13 Aligned_cols=162 Identities=18% Similarity=0.211 Sum_probs=92.8
Q ss_pred eEeeeccccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCC
Q 024866 7 FNFHEASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNH 86 (261)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~ 86 (261)
|+.++..+..++++.....+..+..+++|+.|++.......+. ....+.+|+.|+++++. +..+ +.+..+++
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~l~~n~-l~~~---~~l~~l~~ 130 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS----AIAGLQSIKTLDLTSTQ-ITDV---TPLAGLSN 130 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG----GGTTCTTCCEEECTTSC-CCCC---GGGTTCTT
T ss_pred hhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch----hhcCCCCCCEEECCCCC-CCCc---hhhcCCCC
Confidence 4456778888888887777777888999999998854433322 12234578999998874 4554 34788888
Q ss_pred CCeEEEeccC-----------CcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEeccccc
Q 024866 87 LNELYIFKGI-----------ELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAM 155 (261)
Q Consensus 87 L~~L~i~~c~-----------~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L 155 (261)
|+.|+++++. +|+.+.+..... ..++....+++|+.|+++++ +++++..+..+++|++|++++|. +
T Consensus 131 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~-l 207 (308)
T 1h6u_A 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQV-SDLTPLANLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNNQ-I 207 (308)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTSC-C
T ss_pred CCEEECCCCccCcCccccCCCCccEEEccCCcC-CCChhhcCCCCCCEEECCCC-ccCcChhhcCCCCCCEEEccCCc-c
Confidence 9999888763 122222211111 00111233444444444444 33433333444444444444431 2
Q ss_pred ccccccccccccCcccCCcccCCcccEEeccCCccccc
Q 024866 156 EEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKS 193 (261)
Q Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~ 193 (261)
..+ + .+..+++|+.|++.+.+ ++.
T Consensus 208 ~~~------------~-~l~~l~~L~~L~l~~N~-i~~ 231 (308)
T 1h6u_A 208 SDV------------S-PLANTSNLFIVTLTNQT-ITN 231 (308)
T ss_dssp CBC------------G-GGTTCTTCCEEEEEEEE-EEC
T ss_pred Ccc------------c-cccCCCCCCEEEccCCe-eec
Confidence 111 1 24568899999998865 443
No 22
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.00 E-value=9.5e-11 Score=102.38 Aligned_cols=179 Identities=17% Similarity=0.093 Sum_probs=93.8
Q ss_pred eccccccccCCCcc---hhhhhhcccCCceEEEEEcchH--HHHHHhhCcccccceeEEEEcCCCCCCcccccccccccC
Q 024866 11 EASEESVLFGGGEV---LVQELLGLKYLEVLELTLGSYQ--ALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLN 85 (261)
Q Consensus 11 ~~~~~~~~~~~~~~---~l~eL~~L~~L~~L~i~~~~~~--~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~ 85 (261)
+..+..++++.... ....+..+++|+.|++...... ....+.. .++|++|++++|..+....+...+..++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~----~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK----NSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT----CTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc----CCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 44555555554321 3344556666666666543221 1111111 3466777777765544322223355666
Q ss_pred CCCeEEEeccCCcceEecccccccccCCCCcCCC-CCcEEEEecCC-CCCC--C-CccccCCCCcEEEEecccccccccc
Q 024866 86 HLNELYIFKGIELEELKIDYTEIVRKRREPFVFR-SLHRVIIGECH-KLKD--V-TFLVFAPNLKSLRLFDCGAMEEIIS 160 (261)
Q Consensus 86 ~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~-~L~~L~l~~C~-~l~~--l-~~l~~lp~L~~L~i~~C~~L~~i~~ 160 (261)
+|++|++++|..+....+. .....++ +|+.|++.+|. .+.+ + .....+++|++|++++|..+.....
T Consensus 169 ~L~~L~l~~~~~l~~~~~~--------~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 240 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQ--------VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF 240 (336)
T ss_dssp TCCEEECCCCTTCCHHHHH--------HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG
T ss_pred CCCEEcCCCCCCcChHHHH--------HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH
Confidence 7777777766444321000 0013456 77777777664 3332 1 1224567777777777654432111
Q ss_pred cccccccCcccCCcccCCcccEEeccCCcccccccC-CCccCCccceeeeccC
Q 024866 161 VGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW-KPLPFTHLKKMAVLMC 212 (261)
Q Consensus 161 ~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p~L~~L~i~~C 212 (261)
..+..+++|++|++.+|..+..... ....+++|+.|.+++|
T Consensus 241 -----------~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 241 -----------QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp -----------GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred -----------HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 1334568888888888874432211 1235788888888888
No 23
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.99 E-value=6.6e-10 Score=105.52 Aligned_cols=166 Identities=17% Similarity=0.185 Sum_probs=98.4
Q ss_pred ccccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEE
Q 024866 12 ASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELY 91 (261)
Q Consensus 12 ~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~ 91 (261)
..+..++.+.....+..++.+++|+.|++.......+.. ...+.+|+.|.|+++ .+..+ +.+..+++|+.|+
T Consensus 44 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~ 115 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDEN-KIKDL---SSLKDLKKLKSLS 115 (605)
T ss_dssp TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSS-CCCCC---TTSTTCTTCCEEE
T ss_pred CCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCC-CCCCC---hhhccCCCCCEEE
Confidence 344455555555555556666666666665332221111 112345666666665 23333 3455666666666
Q ss_pred EeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccccccCccc
Q 024866 92 IFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMM 171 (261)
Q Consensus 92 i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~ 171 (261)
++++. +.. ++....+++|+.|+|++| ++..+..+..+++|+.|++++|. +..+.
T Consensus 116 Ls~N~-l~~-----------l~~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~-l~~~~------------ 169 (605)
T 1m9s_A 116 LEHNG-ISD-----------INGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQ-ISDIV------------ 169 (605)
T ss_dssp CTTSC-CCC-----------CGGGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSC-CCCCG------------
T ss_pred ecCCC-CCC-----------CccccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCc-CCCch------------
Confidence 66554 221 122356778888888777 56666666777888888887763 33222
Q ss_pred CCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCcc
Q 024866 172 GHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQ 214 (261)
Q Consensus 172 ~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~ 214 (261)
.+..+++|+.|+|.++ ++..+. ....+++|+.|.+++|+-
T Consensus 170 -~l~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 170 -PLAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp -GGTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred -hhccCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCCcC
Confidence 1456889999999887 366653 345688999999988753
No 24
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.99 E-value=2.2e-09 Score=97.61 Aligned_cols=183 Identities=20% Similarity=0.213 Sum_probs=98.8
Q ss_pred cCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccC
Q 024866 33 KYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKR 112 (261)
Q Consensus 33 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~ 112 (261)
++++.|++.......+. ......+.+|+.|+|+++ .+..+.. ..+..+++|+.|+++++. +..+..+
T Consensus 64 ~~l~~L~L~~n~i~~~~--~~~~~~l~~L~~L~Ls~n-~i~~i~~-~~~~~l~~L~~L~L~~n~-l~~~~~~-------- 130 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIK--VNSFKHLRHLEILQLSRN-HIRTIEI-GAFNGLANLNTLELFDNR-LTTIPNG-------- 130 (440)
T ss_dssp TTCSEEECCSCCCCEEC--TTTTSSCSSCCEEECCSS-CCCEECG-GGGTTCSSCCEEECCSSC-CSSCCTT--------
T ss_pred CCCcEEEccCCcCCeeC--HHHhhCCCCCCEEECCCC-cCCccCh-hhccCCccCCEEECCCCc-CCeeCHh--------
Confidence 56777877743322111 112233468999999986 4566654 578899999999999863 3322110
Q ss_pred CCCcCCCCCcEEEEecCCCCCCCC--ccccCCCCcEEEEecccccccccccccc--c----------ccCcccCCcccCC
Q 024866 113 REPFVFRSLHRVIIGECHKLKDVT--FLVFAPNLKSLRLFDCGAMEEIISVGKI--A----------ETPEMMGHISPFE 178 (261)
Q Consensus 113 p~~~~~~~L~~L~l~~C~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~--~----------~~~~~~~~~~~~p 178 (261)
....+++|+.|+++++ ++..+. .+..+++|++|++++|+.+..+...... . ..+.++ .+..++
T Consensus 131 -~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~ 207 (440)
T 3zyj_A 131 -AFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLI 207 (440)
T ss_dssp -TSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCS
T ss_pred -HhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCc
Confidence 1234556666666554 344332 1334566666666655544443221000 0 000111 234567
Q ss_pred cccEEeccCCcccccccC-CCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866 179 NLQSLDLDDLPHLKSIFW-KPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR 233 (261)
Q Consensus 179 ~L~~L~L~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 233 (261)
+|+.|++.+. +++.+.. ....+++|+.|.+.++ +++.++........+|+.+.
T Consensus 208 ~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 261 (440)
T 3zyj_A 208 KLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEIN 261 (440)
T ss_dssp SCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEE
T ss_pred ccCEEECCCC-ccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEE
Confidence 7777777776 4665543 2345778888887776 34444444333345555544
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.98 E-value=3.1e-09 Score=97.31 Aligned_cols=56 Identities=14% Similarity=-0.048 Sum_probs=31.9
Q ss_pred cccCCcccEEeccCCcccccccC-CCccCCccceeeeccCccCCCCCCCCccccCCceE
Q 024866 174 ISPFENLQSLDLDDLPHLKSIFW-KPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFV 231 (261)
Q Consensus 174 ~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~ 231 (261)
+..+++|+.|++.+.. ++.+.. ....+++|+.|+++++ +++.+|........+|+.
T Consensus 268 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 324 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLET 324 (477)
T ss_dssp CTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCE
T ss_pred ccccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCE
Confidence 4456777777777653 555433 2335677777777776 556665443333334444
No 26
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.97 E-value=2.3e-09 Score=93.59 Aligned_cols=49 Identities=8% Similarity=0.024 Sum_probs=37.2
Q ss_pred CcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCCCCc
Q 024866 173 HISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSN 223 (261)
Q Consensus 173 ~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~ 223 (261)
.+..+++|+.|++.++ +++.++.....+++|+.|.++++. ++.+|....
T Consensus 235 ~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f 283 (330)
T 1xku_A 235 SLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDF 283 (330)
T ss_dssp TGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSS
T ss_pred hccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc-CCccChhhc
Confidence 4556788999999887 477777666678999999999874 677765444
No 27
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.93 E-value=2.4e-09 Score=100.80 Aligned_cols=60 Identities=17% Similarity=0.094 Sum_probs=35.0
Q ss_pred CCcccCCcccEEeccCCcccccccC-CCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866 172 GHISPFENLQSLDLDDLPHLKSIFW-KPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR 233 (261)
Q Consensus 172 ~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 233 (261)
..+..+++|+.|++.++. ++.+.. ....+++|+.|.+++| ++..++........+|+.+.
T Consensus 467 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 527 (606)
T 3vq2_A 467 NVFANTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLD 527 (606)
T ss_dssp SCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEE
T ss_pred HhhccCCCCCEEECCCCc-CCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEE
Confidence 345667788888888773 555543 3446788888888888 34444222222234455543
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.92 E-value=3.2e-09 Score=100.36 Aligned_cols=108 Identities=17% Similarity=0.135 Sum_probs=62.9
Q ss_pred CCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccc--c----------ccCcccCCcccCCcccEEec
Q 024866 118 FRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKI--A----------ETPEMMGHISPFENLQSLDL 185 (261)
Q Consensus 118 ~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~--~----------~~~~~~~~~~~~p~L~~L~L 185 (261)
+++|+.|++.++ .+.+..++..+++|++|+++++. +..++..... . ..++++.....+|+|+.|++
T Consensus 231 ~~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L 308 (597)
T 3oja_B 231 NVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL 308 (597)
T ss_dssp CSCCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEEC
T ss_pred CCCCCEEECCCC-CCCCChhhccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEEC
Confidence 345666666666 45555566778888888888763 3333211100 0 01123334455778888888
Q ss_pred cCCcccccccCCCccCCccceeeeccCccCCCCCCCCccccCCceEE
Q 024866 186 DDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVI 232 (261)
Q Consensus 186 ~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 232 (261)
+++. +..++.....+++|+.|++++|. +..+|... ...|+.+
T Consensus 309 s~N~-l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~~~---~~~L~~L 350 (597)
T 3oja_B 309 SHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLKLST---HHTLKNL 350 (597)
T ss_dssp CSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCCCCT---TCCCSEE
T ss_pred CCCC-CCccCcccccCCCCCEEECCCCC-CCCcChhh---cCCCCEE
Confidence 7764 55665555567888888888875 55555433 2445443
No 29
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.91 E-value=2.5e-09 Score=92.26 Aligned_cols=202 Identities=14% Similarity=0.094 Sum_probs=114.5
Q ss_pred eccccccccCCCcchhhh--hhcccCCceEEEEEcchHHH----HHHhhCcccccceeEEEEcCCCCCCccccccccccc
Q 024866 11 EASEESVLFGGGEVLVQE--LLGLKYLEVLELTLGSYQAL----QILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADL 84 (261)
Q Consensus 11 ~~~~~~~~~~~~~~~l~e--L~~L~~L~~L~i~~~~~~~l----~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l 84 (261)
+..+..++++.....+.. +..+++|+.|++........ .... ...+|+.|+++++. +..++ ..+..+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----~~~~L~~L~Ls~n~-i~~l~--~~~~~l 100 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF----GTTSLKYLDLSFNG-VITMS--SNFLGL 100 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH----SCSCCCEEECCSCS-EEEEE--EEEETC
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccc----cccccCEEECCCCc-cccCh--hhcCCC
Confidence 455666666665444433 56778888887763321110 1111 12467777777653 23332 345666
Q ss_pred CCCCeEEEecc--------------CCcceEecccccccccCC-CCcCCCCCcEEEEecCCCCCC--C-CccccCCCCcE
Q 024866 85 NHLNELYIFKG--------------IELEELKIDYTEIVRKRR-EPFVFRSLHRVIIGECHKLKD--V-TFLVFAPNLKS 146 (261)
Q Consensus 85 ~~L~~L~i~~c--------------~~Le~l~~~~~~~~~~~p-~~~~~~~L~~L~l~~C~~l~~--l-~~l~~lp~L~~ 146 (261)
++|+.|+++++ .+|+.+.+.........+ ....+++|+.|++.++ ++.. + ..+..+++|++
T Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~ 179 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTF 179 (306)
T ss_dssp TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCE
T ss_pred CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC-ccccccchhHHhhCcCCCE
Confidence 67777766543 223333332221111122 1356789999999887 3443 1 34567899999
Q ss_pred EEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCC-CccCCccceeeeccCccCCCCCCCCccc
Q 024866 147 LRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWK-PLPFTHLKKMAVLMCDQLRKPPLDSNSA 225 (261)
Q Consensus 147 L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~L~~lp~~~~~~ 225 (261)
|+++++. ++.+.. ..+..+++|+.|++.+.. ++.+... ...+++|+.|+++++.--...|......
T Consensus 180 L~Ls~n~-l~~~~~-----------~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 180 LDLSQCQ-LEQLSP-----------TAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp EECTTSC-CCEECT-----------TTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred EECCCCC-cCCcCH-----------HHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 9999873 443321 244568899999998865 6665442 3457899999999985433333222222
Q ss_pred cCCceEEE
Q 024866 226 KERKFVIR 233 (261)
Q Consensus 226 ~~~l~~~~ 233 (261)
+.+|+.+.
T Consensus 247 ~~~L~~L~ 254 (306)
T 2z66_A 247 PSSLAFLN 254 (306)
T ss_dssp CTTCCEEE
T ss_pred hccCCEEE
Confidence 23555543
No 30
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.91 E-value=2.1e-09 Score=94.07 Aligned_cols=90 Identities=18% Similarity=0.179 Sum_probs=57.4
Q ss_pred CCCcEEEEecCCCCCCCC--ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccC
Q 024866 119 RSLHRVIIGECHKLKDVT--FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW 196 (261)
Q Consensus 119 ~~L~~L~l~~C~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~ 196 (261)
++|+.|+++++ +++.+. .+..+++|++|+++++ .+..+.. ..+..+++|+.|++.++ +++.++.
T Consensus 193 ~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~lp~ 258 (332)
T 2ft3_A 193 ETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHN-QIRMIEN-----------GSLSFLPTLRELHLDNN-KLSRVPA 258 (332)
T ss_dssp SSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCT-----------TGGGGCTTCCEEECCSS-CCCBCCT
T ss_pred CCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCC-cCCcCCh-----------hHhhCCCCCCEEECCCC-cCeecCh
Confidence 56666666555 344432 2345666677666665 2222211 23456889999999887 4777776
Q ss_pred CCccCCccceeeeccCccCCCCCCCCc
Q 024866 197 KPLPFTHLKKMAVLMCDQLRKPPLDSN 223 (261)
Q Consensus 197 ~~~~~p~L~~L~i~~C~~L~~lp~~~~ 223 (261)
....+++|+.|.++++ +++.+|....
T Consensus 259 ~l~~l~~L~~L~l~~N-~l~~~~~~~~ 284 (332)
T 2ft3_A 259 GLPDLKLLQVVYLHTN-NITKVGVNDF 284 (332)
T ss_dssp TGGGCTTCCEEECCSS-CCCBCCTTSS
T ss_pred hhhcCccCCEEECCCC-CCCccChhHc
Confidence 6667889999999887 4777765443
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.90 E-value=4.1e-09 Score=94.10 Aligned_cols=196 Identities=15% Similarity=0.123 Sum_probs=98.3
Q ss_pred eeeEeeeccccccccCCCcchhhh--hhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCccccccccc
Q 024866 5 GWFNFHEASEESVLFGGGEVLVQE--LLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFA 82 (261)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~e--L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~ 82 (261)
+.|+-++..+..++++.....+.. +..+++|+.|++.......+. .......++|+.|+++++. +..++ ++
T Consensus 111 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~----~~ 183 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSNR-LTHVD----LS 183 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC--TTTTSSCTTCCEEECCSSC-CSBCC----GG
T ss_pred HHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC--hhhccCCCCCCEEECCCCc-CCccc----cc
Confidence 345556667777777765444433 466778888877643221110 1112223467777777653 23322 23
Q ss_pred ccCCCCeEE-------------------EeccC----------CcceEecccccccccCCCCcCCCCCcEEEEecCCCCC
Q 024866 83 DLNHLNELY-------------------IFKGI----------ELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLK 133 (261)
Q Consensus 83 ~l~~L~~L~-------------------i~~c~----------~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~ 133 (261)
.+++|+.|+ ++++. +|+.+.+..... ...+....+++|+.|+++++ ++.
T Consensus 184 ~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~Ls~n-~l~ 261 (390)
T 3o6n_A 184 LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL-TDTAWLLNYPGLVEVDLSYN-ELE 261 (390)
T ss_dssp GCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCC-CCCGGGGGCTTCSEEECCSS-CCC
T ss_pred cccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCC-cccHHHcCCCCccEEECCCC-cCC
Confidence 333333333 33221 122222221111 11122345566666666665 343
Q ss_pred CC--CccccCCCCcEEEEecccccccccccccc-c----------ccCcccCCcccCCcccEEeccCCcccccccCCCcc
Q 024866 134 DV--TFLVFAPNLKSLRLFDCGAMEEIISVGKI-A----------ETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLP 200 (261)
Q Consensus 134 ~l--~~l~~lp~L~~L~i~~C~~L~~i~~~~~~-~----------~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~ 200 (261)
.+ ..+..+++|++|+++++. ++.+...... . ....++..+..+++|+.|++.+++ ++.+. ...
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~ 337 (390)
T 3o6n_A 262 KIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLK--LST 337 (390)
T ss_dssp EEESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCT
T ss_pred CcChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCc-cceeC--chh
Confidence 33 123445666666665542 2222111000 0 001233345678999999999976 66664 556
Q ss_pred CCccceeeeccCc
Q 024866 201 FTHLKKMAVLMCD 213 (261)
Q Consensus 201 ~p~L~~L~i~~C~ 213 (261)
+++|+.|.+++++
T Consensus 338 ~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 338 HHTLKNLTLSHND 350 (390)
T ss_dssp TCCCSEEECCSSC
T ss_pred hccCCEEEcCCCC
Confidence 8899999998764
No 32
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.89 E-value=2.5e-10 Score=99.70 Aligned_cols=182 Identities=16% Similarity=0.177 Sum_probs=112.0
Q ss_pred hhcccCCceEEEEEcchH--HHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccc
Q 024866 29 LLGLKYLEVLELTLGSYQ--ALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYT 106 (261)
Q Consensus 29 L~~L~~L~~L~i~~~~~~--~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~ 106 (261)
+..+++|+.|++...... .+..... ..++|++|++++|. +..... ..+..+++|++|++++|..+....+.
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~---~~~~L~~L~L~~~~-l~~~~~-~~l~~~~~L~~L~L~~~~~l~~~~l~-- 161 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILS---QCSKLQNLSLEGLR-LSDPIV-NTLAKNSNLVRLNLSGCSGFSEFALQ-- 161 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHT---TBCCCSEEECTTCB-CCHHHH-HHHTTCTTCSEEECTTCBSCCHHHHH--
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHh---hCCCCCEEeCcCcc-cCHHHH-HHHhcCCCCCEEECCCCCCCCHHHHH--
Confidence 445677777777644321 1333332 23578888888874 332222 45677888888888888655321110
Q ss_pred cccccCCCCcCCCCCcEEEEecCCCCCCC---CccccCC-CCcEEEEeccc-ccccccccccccccCcccCCcccCCccc
Q 024866 107 EIVRKRREPFVFRSLHRVIIGECHKLKDV---TFLVFAP-NLKSLRLFDCG-AMEEIISVGKIAETPEMMGHISPFENLQ 181 (261)
Q Consensus 107 ~~~~~~p~~~~~~~L~~L~l~~C~~l~~l---~~l~~lp-~L~~L~i~~C~-~L~~i~~~~~~~~~~~~~~~~~~~p~L~ 181 (261)
.....+++|+.|++.+|.++.+. ..+..+| +|++|++++|. .+.+. .++.....+++|+
T Consensus 162 ------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~----------~l~~~~~~~~~L~ 225 (336)
T 2ast_B 162 ------TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS----------DLSTLVRRCPNLV 225 (336)
T ss_dssp ------HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH----------HHHHHHHHCTTCS
T ss_pred ------HHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH----------HHHHHHhhCCCCC
Confidence 00245789999999998777652 2245688 99999999986 34321 0111334689999
Q ss_pred EEeccCCcccccc-cCCCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866 182 SLDLDDLPHLKSI-FWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR 233 (261)
Q Consensus 182 ~L~L~~~~~L~~i-~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 233 (261)
+|++.++..++.. ......+++|++|.+++|..+..-.........+|+.+.
T Consensus 226 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 278 (336)
T 2ast_B 226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 278 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred EEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEe
Confidence 9999999866542 223456799999999999744322111122245566654
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.88 E-value=1.1e-08 Score=95.42 Aligned_cols=104 Identities=17% Similarity=0.129 Sum_probs=66.6
Q ss_pred cCCCCCcEEEEecCCCCCCC--CccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccccc
Q 024866 116 FVFRSLHRVIIGECHKLKDV--TFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKS 193 (261)
Q Consensus 116 ~~~~~L~~L~l~~C~~l~~l--~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~ 193 (261)
..+++|+.|++++|. +... ..+..+++|++|++++|.-... .++..+..+++|+.|++.++. ++.
T Consensus 418 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~p~~~~~l~~L~~L~l~~n~-l~~ 484 (570)
T 2z63_A 418 LSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQEN-----------FLPDIFTELRNLTFLDLSQCQ-LEQ 484 (570)
T ss_dssp TTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGG-----------EECSCCTTCTTCCEEECTTSC-CCE
T ss_pred hcCCCCCEEeCcCCc-ccccchhhhhcCCcCcEEECcCCcCccc-----------cchhhhhcccCCCEEECCCCc-ccc
Confidence 456677777776663 3332 1234567777777777642111 122356678999999999885 666
Q ss_pred cc-CCCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866 194 IF-WKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR 233 (261)
Q Consensus 194 i~-~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 233 (261)
+. .....+++|+.|.+++| +++.+|........+|+.++
T Consensus 485 ~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 524 (570)
T 2z63_A 485 LSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIW 524 (570)
T ss_dssp ECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred CChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEE
Confidence 63 34456899999999998 67777765544456666654
No 34
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.88 E-value=1.9e-09 Score=92.16 Aligned_cols=181 Identities=15% Similarity=0.116 Sum_probs=123.2
Q ss_pred eeeEeeeccccccccCCCcchh--hhhhcccCCceEEEEEcc-hHHHHHHhhCcccccceeEEEEcCCCCCCcccccccc
Q 024866 5 GWFNFHEASEESVLFGGGEVLV--QELLGLKYLEVLELTLGS-YQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAF 81 (261)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l--~eL~~L~~L~~L~i~~~~-~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l 81 (261)
+.|+.++..+..++++.....+ ..+..+++|+.|++.... ...+. ........+|+.|+++++. +..+.. ..+
T Consensus 50 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~ 125 (285)
T 1ozn_A 50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD--PATFHGLGRLHTLHLDRCG-LQELGP-GLF 125 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC--TTTTTTCTTCCEEECTTSC-CCCCCT-TTT
T ss_pred HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC--HHHhcCCcCCCEEECCCCc-CCEECH-hHh
Confidence 3455677788888887754433 467888999999987432 11110 1122234689999999874 344433 567
Q ss_pred cccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc--cccCCCCcEEEEeccccccccc
Q 024866 82 ADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF--LVFAPNLKSLRLFDCGAMEEII 159 (261)
Q Consensus 82 ~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~ 159 (261)
..+++|+.|+++++. +..+.. ...+.+++|+.|+++++ +++.++. +..+++|++|+++++. +..+.
T Consensus 126 ~~l~~L~~L~l~~n~-l~~~~~---------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~ 193 (285)
T 1ozn_A 126 RGLAALQYLYLQDNA-LQALPD---------DTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR-VAHVH 193 (285)
T ss_dssp TTCTTCCEEECCSSC-CCCCCT---------TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEEC
T ss_pred hCCcCCCEEECCCCc-ccccCH---------hHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCc-ccccC
Confidence 889999999999875 332211 11356889999999988 5766542 5678999999999974 33332
Q ss_pred ccccccccCcccCCcccCCcccEEeccCCcccccccCC-CccCCccceeeeccCc
Q 024866 160 SVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWK-PLPFTHLKKMAVLMCD 213 (261)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~ 213 (261)
. ..+..+++|+.|++.+. +++.+... ...+++|+.|.+++++
T Consensus 194 ~-----------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 194 P-----------HAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp T-----------TTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred H-----------hHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence 1 24566899999999987 46665532 3457899999988765
No 35
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.88 E-value=2.5e-09 Score=97.63 Aligned_cols=190 Identities=18% Similarity=0.135 Sum_probs=126.7
Q ss_pred eeeEeeeccccccccCCCcchh--hhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCccccccccc
Q 024866 5 GWFNFHEASEESVLFGGGEVLV--QELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFA 82 (261)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l--~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~ 82 (261)
+.|+.++..+..++++.....+ ..+..+++|+.|++.......+. ......+++|+.|+++++. +..++. ..+.
T Consensus 93 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~ 168 (452)
T 3zyi_A 93 DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP--SGAFEYLSKLRELWLRNNP-IESIPS-YAFN 168 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC--TTTSSSCTTCCEEECCSCC-CCEECT-TTTT
T ss_pred HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC--hhhhcccCCCCEEECCCCC-cceeCH-hHHh
Confidence 3455677788888887754444 46778889999988743322111 0112234578899988763 455543 4677
Q ss_pred ccCCCCeEEEeccCCcceEe--------------cccccccccCCCCcCCCCCcEEEEecCCCCCCCC--ccccCCCCcE
Q 024866 83 DLNHLNELYIFKGIELEELK--------------IDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT--FLVFAPNLKS 146 (261)
Q Consensus 83 ~l~~L~~L~i~~c~~Le~l~--------------~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~--~l~~lp~L~~ 146 (261)
.+++|+.|++++|..++.+. +..... ..+|....+++|+.|+++++ ++..+. .+..+++|++
T Consensus 169 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 246 (452)
T 3zyi_A 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-KDMPNLTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKK 246 (452)
T ss_dssp TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC-SSCCCCTTCTTCCEEECTTS-CCSEECGGGGTTCTTCCE
T ss_pred cCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc-cccccccccccccEEECcCC-cCcccCcccccCccCCCE
Confidence 88888888888765555443 222211 23455678899999999988 566552 3567899999
Q ss_pred EEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCC-ccCCccceeeeccCc
Q 024866 147 LRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKP-LPFTHLKKMAVLMCD 213 (261)
Q Consensus 147 L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~-~~~p~L~~L~i~~C~ 213 (261)
|+++++. +..+.. ..+..+++|+.|++.+. +++.+.... ..+++|+.|++++.|
T Consensus 247 L~L~~n~-l~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 247 LWVMNSQ-VSLIER-----------NAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EECTTSC-CCEECT-----------TTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred EEeCCCc-CceECH-----------HHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 9999874 333322 24456889999999987 577776543 457899999987764
No 36
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.87 E-value=4.4e-09 Score=90.65 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=108.1
Q ss_pred hhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecc
Q 024866 25 LVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKID 104 (261)
Q Consensus 25 ~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~ 104 (261)
.+..+..+++|+.|.+.......++. ...+++|+.|+++++ .+..++ .+..+++|+.|+++++. +..+
T Consensus 38 ~~~~~~~l~~L~~L~l~~~~i~~~~~----~~~l~~L~~L~L~~n-~l~~~~---~l~~l~~L~~L~l~~n~-l~~~--- 105 (291)
T 1h6t_A 38 DAVTQNELNSIDQIIANNSDIKSVQG----IQYLPNVTKLFLNGN-KLTDIK---PLANLKNLGWLFLDENK-VKDL--- 105 (291)
T ss_dssp SEECHHHHHTCCEEECTTSCCCCCTT----GGGCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSC-CCCG---
T ss_pred cccchhhcCcccEEEccCCCcccChh----HhcCCCCCEEEccCC-ccCCCc---ccccCCCCCEEECCCCc-CCCC---
Confidence 33344556777777776443333322 223457889998886 344442 27788889999888765 3221
Q ss_pred cccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEe
Q 024866 105 YTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLD 184 (261)
Q Consensus 105 ~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~ 184 (261)
+....+++|+.|++.++ ++.++..+..+++|++|++++|. +..+ ..+..+++|+.|+
T Consensus 106 --------~~l~~l~~L~~L~L~~n-~i~~~~~l~~l~~L~~L~l~~n~-l~~~-------------~~l~~l~~L~~L~ 162 (291)
T 1h6t_A 106 --------SSLKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNNK-ITDI-------------TVLSRLTKLDTLS 162 (291)
T ss_dssp --------GGGTTCTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSSC-CCCC-------------GGGGGCTTCSEEE
T ss_pred --------hhhccCCCCCEEECCCC-cCCCChhhcCCCCCCEEEccCCc-CCcc-------------hhhccCCCCCEEE
Confidence 22467889999999988 68877777889999999999873 3332 1345689999999
Q ss_pred ccCCcccccccCCCccCCccceeeeccCccCCCCC
Q 024866 185 LDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPP 219 (261)
Q Consensus 185 L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp 219 (261)
+.++ +++.+.. ...+++|+.|.++++ +++.+|
T Consensus 163 L~~N-~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~ 194 (291)
T 1h6t_A 163 LEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLR 194 (291)
T ss_dssp CCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCG
T ss_pred ccCC-ccccchh-hcCCCccCEEECCCC-cCCCCh
Confidence 9987 4666654 556899999999888 455554
No 37
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.86 E-value=1.6e-09 Score=94.38 Aligned_cols=186 Identities=15% Similarity=0.048 Sum_probs=92.7
Q ss_pred eEeeeccccccccCCCcchh--hhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCccccccccccc
Q 024866 7 FNFHEASEESVLFGGGEVLV--QELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADL 84 (261)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~l--~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l 84 (261)
|+..+..+..++++.....+ ..+..+++|+.|++......... . ...+++|+.|+++++. +..+ ...
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~-~~~l~~L~~L~Ls~n~-l~~l------~~~ 98 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL---D-LESLSTLRTLDLNNNY-VQEL------LVG 98 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE---E-ETTCTTCCEEECCSSE-EEEE------EEC
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch---h-hhhcCCCCEEECcCCc-cccc------cCC
Confidence 33445566677776654433 45677777777777532211110 0 1123456666666652 2222 222
Q ss_pred CCCCeEEEecc----------CCcceEecccccccccCC-CCcCCCCCcEEEEecCCCCCCCCc---cccCCCCcEEEEe
Q 024866 85 NHLNELYIFKG----------IELEELKIDYTEIVRKRR-EPFVFRSLHRVIIGECHKLKDVTF---LVFAPNLKSLRLF 150 (261)
Q Consensus 85 ~~L~~L~i~~c----------~~Le~l~~~~~~~~~~~p-~~~~~~~L~~L~l~~C~~l~~l~~---l~~lp~L~~L~i~ 150 (261)
++|+.|+++++ ++|+.+.+.........+ ..+.+++|+.|+++++ ++..+.. ...+++|++|+++
T Consensus 99 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp TTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECT
T ss_pred CCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECC
Confidence 44444444332 334444443322211111 2345677777777776 4554321 1346777777777
Q ss_pred cccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCC
Q 024866 151 DCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPL 220 (261)
Q Consensus 151 ~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~ 220 (261)
++. ++.+.. ...+++|+.|+++++. ++.++.....+++|+.|+++++ +++.+|.
T Consensus 178 ~N~-l~~~~~-------------~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~ 231 (317)
T 3o53_A 178 YNF-IYDVKG-------------QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEK 231 (317)
T ss_dssp TSC-CCEEEC-------------CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECT
T ss_pred CCc-Cccccc-------------ccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCC-cccchhh
Confidence 763 333211 1235666666666542 5555444444566666666665 4445554
No 38
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.86 E-value=7.6e-09 Score=97.40 Aligned_cols=38 Identities=16% Similarity=0.075 Sum_probs=19.1
Q ss_pred cccCCcccEEeccCCcccccccC-CCccCCccceeeeccC
Q 024866 174 ISPFENLQSLDLDDLPHLKSIFW-KPLPFTHLKKMAVLMC 212 (261)
Q Consensus 174 ~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p~L~~L~i~~C 212 (261)
+..+++|+.|++.++. ++.+.. ....+++|+.|+++++
T Consensus 472 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 472 LQTLGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp GGGCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred hccCCCccEEECCCCc-cCccChhhhccccCCCEEECCCC
Confidence 3445555555555552 444322 2334566666666655
No 39
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.84 E-value=9.6e-08 Score=81.05 Aligned_cols=149 Identities=19% Similarity=0.185 Sum_probs=92.5
Q ss_pred ccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc
Q 024866 58 KSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF 137 (261)
Q Consensus 58 ~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~ 137 (261)
+.+|+.|+++++ .+..++. ..+..+++|+.|+++++. +..+.. .....+++|+.|++.++ +++.+..
T Consensus 60 l~~L~~L~l~~n-~l~~i~~-~~~~~l~~L~~L~l~~n~-l~~~~~---------~~~~~l~~L~~L~l~~n-~l~~~~~ 126 (270)
T 2o6q_A 60 LTKLRLLYLNDN-KLQTLPA-GIFKELKNLETLWVTDNK-LQALPI---------GVFDQLVNLAELRLDRN-QLKSLPP 126 (270)
T ss_dssp CTTCCEEECCSS-CCSCCCT-TTTSSCTTCCEEECCSSC-CCCCCT---------TTTTTCSSCCEEECCSS-CCCCCCT
T ss_pred CCCCCEEECCCC-ccCeeCh-hhhcCCCCCCEEECCCCc-CCcCCH---------hHcccccCCCEEECCCC-ccCeeCH
Confidence 346777777764 3444432 345667777777777654 222210 11245778888888876 4655532
Q ss_pred --cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCC-CccCCccceeeeccCcc
Q 024866 138 --LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWK-PLPFTHLKKMAVLMCDQ 214 (261)
Q Consensus 138 --l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~ 214 (261)
+..+++|++|+++++. +..+.. ..+..+++|+.|++.++ +++.+... ...+++|+.|+++++ +
T Consensus 127 ~~~~~l~~L~~L~Ls~n~-l~~~~~-----------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~ 192 (270)
T 2o6q_A 127 RVFDSLTKLTYLSLGYNE-LQSLPK-----------GVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-Q 192 (270)
T ss_dssp TTTTTCTTCCEEECCSSC-CCCCCT-----------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-C
T ss_pred HHhCcCcCCCEEECCCCc-CCccCH-----------hHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-c
Confidence 4568888888888763 333221 12456788888888876 36666543 335788899988887 6
Q ss_pred CCCCCCCCccccCCceEEE
Q 024866 215 LRKPPLDSNSAKERKFVIR 233 (261)
Q Consensus 215 L~~lp~~~~~~~~~l~~~~ 233 (261)
++.+|.........|+.+.
T Consensus 193 l~~~~~~~~~~l~~L~~L~ 211 (270)
T 2o6q_A 193 LKRVPEGAFDSLEKLKMLQ 211 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEE
T ss_pred CCcCCHHHhccccCCCEEE
Confidence 7777765544445666544
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.84 E-value=4.9e-09 Score=98.71 Aligned_cols=206 Identities=17% Similarity=0.130 Sum_probs=102.0
Q ss_pred eeccccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCe
Q 024866 10 HEASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNE 89 (261)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~ 89 (261)
++..+..++++.....-..+..+++|+.|++..................++|+.|+++++. +..++ ..+..+++|+.
T Consensus 327 l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~--~~~~~l~~L~~ 403 (606)
T 3vq2_A 327 LPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMS--ANFMGLEELQH 403 (606)
T ss_dssp CSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEEC--CCCTTCTTCCE
T ss_pred CCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccch--hhccCCCCCCe
Confidence 4445555555542222224555666666666532211110000000112356666666653 23332 34555666666
Q ss_pred EEEeccC--------------CcceEecccccccccCC-CCcCCCCCcEEEEecCCCCCC--C-CccccCCCCcEEEEec
Q 024866 90 LYIFKGI--------------ELEELKIDYTEIVRKRR-EPFVFRSLHRVIIGECHKLKD--V-TFLVFAPNLKSLRLFD 151 (261)
Q Consensus 90 L~i~~c~--------------~Le~l~~~~~~~~~~~p-~~~~~~~L~~L~l~~C~~l~~--l-~~l~~lp~L~~L~i~~ 151 (261)
|+++++. .|+.+.+......+..| ..+.+++|+.|++.+| ++.+ + ..++.+++|++|++++
T Consensus 404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSK 482 (606)
T ss_dssp EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTT
T ss_pred eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCC
Confidence 6655442 11111111111001111 1244566666666655 2332 1 1234566666666666
Q ss_pred ccccccccccccccccCcccCCcccCCcccEEeccCCcccccc-cCCCccCCccceeeeccCccCCCCCCCCccccCCce
Q 024866 152 CGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSI-FWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKF 230 (261)
Q Consensus 152 C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i-~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~ 230 (261)
|. +..+. +..+..+++|++|++.++. ++.+ +.....+++|+.|++++|. ++.+|......+.+|+
T Consensus 483 n~-l~~~~-----------~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~ 548 (606)
T 3vq2_A 483 CQ-LEQIS-----------WGVFDTLHRLQLLNMSHNN-LLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLA 548 (606)
T ss_dssp SC-CCEEC-----------TTTTTTCTTCCEEECCSSC-CSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCC
T ss_pred Cc-CCccC-----------hhhhcccccCCEEECCCCc-CCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCc
Confidence 52 22222 2245678899999999884 6555 3344568899999999985 7788876333223466
Q ss_pred EEE
Q 024866 231 VIR 233 (261)
Q Consensus 231 ~~~ 233 (261)
.+.
T Consensus 549 ~l~ 551 (606)
T 3vq2_A 549 FFN 551 (606)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 41
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.84 E-value=6.1e-09 Score=98.90 Aligned_cols=150 Identities=17% Similarity=0.211 Sum_probs=106.9
Q ss_pred hhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEeccc
Q 024866 26 VQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDY 105 (261)
Q Consensus 26 l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~ 105 (261)
+..+..|.+|+.|.+.......++ ....+++|+.|+|+++. +..++ .+..+++|+.|++++|. +..
T Consensus 36 ~~~~~~L~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~Ls~N~-l~~~~---~l~~l~~L~~L~Ls~N~-l~~----- 101 (605)
T 1m9s_A 36 AVTQNELNSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNK-LTDIK---PLTNLKNLGWLFLDENK-IKD----- 101 (605)
T ss_dssp EECHHHHTTCCCCBCTTCCCCCCT----TGGGCTTCCEEECTTSC-CCCCG---GGGGCTTCCEEECCSSC-CCC-----
T ss_pred ccchhcCCCCCEEECcCCCCCCCh----HHccCCCCCEEEeeCCC-CCCCh---hhccCCCCCEEECcCCC-CCC-----
Confidence 334555666666666543333222 22335689999999873 45552 37889999999999875 332
Q ss_pred ccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEec
Q 024866 106 TEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDL 185 (261)
Q Consensus 106 ~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L 185 (261)
++....+++|+.|++++| ++.++..+..+++|+.|++++|. +..+ ..+..+++|+.|+|
T Consensus 102 ------l~~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~-l~~l-------------~~l~~l~~L~~L~L 160 (605)
T 1m9s_A 102 ------LSSLKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNNK-ITDI-------------TVLSRLTKLDTLSL 160 (605)
T ss_dssp ------CTTSTTCTTCCEEECTTS-CCCCCGGGGGCTTCSEEECCSSC-CCCC-------------GGGGSCTTCSEEEC
T ss_pred ------ChhhccCCCCCEEEecCC-CCCCCccccCCCccCEEECCCCc-cCCc-------------hhhcccCCCCEEEC
Confidence 234577899999999998 58887777889999999999973 3332 13456899999999
Q ss_pred cCCcccccccCCCccCCccceeeeccC
Q 024866 186 DDLPHLKSIFWKPLPFTHLKKMAVLMC 212 (261)
Q Consensus 186 ~~~~~L~~i~~~~~~~p~L~~L~i~~C 212 (261)
+++. +..+.. ...+++|+.|.+++|
T Consensus 161 s~N~-l~~~~~-l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 161 EDNQ-ISDIVP-LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CSSC-CCCCGG-GTTCTTCCEEECCSS
T ss_pred cCCc-CCCchh-hccCCCCCEEECcCC
Confidence 9874 666654 556899999999887
No 42
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.84 E-value=7.3e-09 Score=96.28 Aligned_cols=192 Identities=16% Similarity=0.102 Sum_probs=111.6
Q ss_pred eeeccccccccCCCcchhh-hh-hcccCCceEEEEEcchHH-HHHHhhCcccccceeEEEEcCCCCCCcccc-ccccccc
Q 024866 9 FHEASEESVLFGGGEVLVQ-EL-LGLKYLEVLELTLGSYQA-LQILLSSNKLKSCIRSLQLRLVRDTPSIID-ATAFADL 84 (261)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~-eL-~~L~~L~~L~i~~~~~~~-l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~-~~~l~~l 84 (261)
+.+..+..++.+.....+. .+ +.+++|+.|++....... ...........++|+.|+++++ .+..++. ...+..+
T Consensus 308 ~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l 386 (549)
T 2z81_A 308 LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTL 386 (549)
T ss_dssp HSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGC
T ss_pred hcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcC
Confidence 3445566666665433332 22 468888888887543322 1111222233467899999987 4454431 1346788
Q ss_pred CCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccc
Q 024866 85 NHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKI 164 (261)
Q Consensus 85 ~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~ 164 (261)
++|+.|+++++. +..+ +.....+++|+.|+++++ +++.++. ...++|++|++++| .++.++
T Consensus 387 ~~L~~L~Ls~N~-l~~l----------p~~~~~~~~L~~L~Ls~N-~l~~l~~-~~~~~L~~L~Ls~N-~l~~~~----- 447 (549)
T 2z81_A 387 KNLTSLDISRNT-FHPM----------PDSCQWPEKMRFLNLSST-GIRVVKT-CIPQTLEVLDVSNN-NLDSFS----- 447 (549)
T ss_dssp TTCCEEECTTCC-CCCC----------CSCCCCCTTCCEEECTTS-CCSCCCT-TSCTTCSEEECCSS-CCSCCC-----
T ss_pred CCCCEEECCCCC-CccC----------ChhhcccccccEEECCCC-Ccccccc-hhcCCceEEECCCC-Chhhhc-----
Confidence 999999998873 4322 112345678888888877 4655431 22467888888776 333221
Q ss_pred cccCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866 165 AETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR 233 (261)
Q Consensus 165 ~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 233 (261)
..+++|+.|++.++ +++.++. ...+++|+.|+++++ +++.+|.........|+.++
T Consensus 448 ----------~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 503 (549)
T 2z81_A 448 ----------LFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIW 503 (549)
T ss_dssp ----------CCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEE
T ss_pred ----------ccCChhcEEECCCC-ccCcCCC-cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEE
Confidence 24677777777776 4666654 335677777777776 55666554333334555443
No 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.84 E-value=6e-09 Score=89.88 Aligned_cols=191 Identities=18% Similarity=0.136 Sum_probs=93.0
Q ss_pred eeeEeeeccccccccCCCcchh----hhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCccccccc
Q 024866 5 GWFNFHEASEESVLFGGGEVLV----QELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATA 80 (261)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l----~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~ 80 (261)
++|+-++..+..++++.....+ .....+++|+.|++....... +........+|++|+++++. +..++....
T Consensus 46 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~---l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~ 121 (306)
T 2z66_A 46 GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT---MSSNFLGLEQLEHLDFQHSN-LKQMSEFSV 121 (306)
T ss_dssp TTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE---EEEEEETCTTCCEEECTTSE-EESSTTTTT
T ss_pred hHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc---ChhhcCCCCCCCEEECCCCc-ccccccchh
Confidence 3455556666666666543322 344456667666665322111 11111223456666666542 222221124
Q ss_pred ccccCCCCeEEEecc-------------CCcceEecccccccc--cCCCCcCCCCCcEEEEecCCCCCCC--CccccCCC
Q 024866 81 FADLNHLNELYIFKG-------------IELEELKIDYTEIVR--KRREPFVFRSLHRVIIGECHKLKDV--TFLVFAPN 143 (261)
Q Consensus 81 l~~l~~L~~L~i~~c-------------~~Le~l~~~~~~~~~--~~p~~~~~~~L~~L~l~~C~~l~~l--~~l~~lp~ 143 (261)
+..+++|+.|+++++ .+|+.+.+......+ .+.....+++|+.|+++++ ++..+ ..+..+++
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~ 200 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSS 200 (306)
T ss_dssp TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTT
T ss_pred hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCC
Confidence 556666666666543 233333333222111 1222455667777777766 45443 23445677
Q ss_pred CcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccC-CCccCC-ccceeeeccCc
Q 024866 144 LKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW-KPLPFT-HLKKMAVLMCD 213 (261)
Q Consensus 144 L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p-~L~~L~i~~C~ 213 (261)
|++|+++++. +..+.. ..+..+++|+.|++.++. ++.... ....+| +|+.|++++++
T Consensus 201 L~~L~L~~N~-l~~~~~-----------~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 201 LQVLNMSHNN-FFSLDT-----------FPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCEEECTTSC-CSBCCS-----------GGGTTCTTCCEEECTTSC-CCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCEEECCCCc-cCccCh-----------hhccCcccCCEeECCCCC-CcccCHHHHHhhhccCCEEEccCCC
Confidence 7777777653 222211 123446677777777663 443322 223343 66666665543
No 44
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.83 E-value=3e-09 Score=98.39 Aligned_cols=39 Identities=10% Similarity=-0.067 Sum_probs=20.6
Q ss_pred cccCCcccEEeccCCcccccccCCCccCCccceeeeccCc
Q 024866 174 ISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCD 213 (261)
Q Consensus 174 ~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~ 213 (261)
+..+++|+.|++++.. +..++.....+++|+.|.+++++
T Consensus 210 ~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 210 FQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp GGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred HcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCC
Confidence 3345556666665532 45554444445566666665543
No 45
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.82 E-value=1.7e-08 Score=85.72 Aligned_cols=174 Identities=20% Similarity=0.177 Sum_probs=118.8
Q ss_pred eccccccccCCCcchhh--hhhcccCCceEEEEEcchHHHHHHhhC-cccccceeEEEEcCCCCCCcccccccccccCCC
Q 024866 11 EASEESVLFGGGEVLVQ--ELLGLKYLEVLELTLGSYQALQILLSS-NKLKSCIRSLQLRLVRDTPSIIDATAFADLNHL 87 (261)
Q Consensus 11 ~~~~~~~~~~~~~~~l~--eL~~L~~L~~L~i~~~~~~~l~~l~~~-~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L 87 (261)
+..+..++++.....+. .+..+++|+.|++....... +... ...+.+|++|+++++ .+..++. ..+..+++|
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---i~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L 111 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT---LPAGIFKELKNLETLWVTDN-KLQALPI-GVFDQLVNL 111 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC---CCTTTTSSCTTCCEEECCSS-CCCCCCT-TTTTTCSSC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe---eChhhhcCCCCCCEEECCCC-cCCcCCH-hHcccccCC
Confidence 34566777766544443 47788999999987433221 1111 123468999999986 4555543 457889999
Q ss_pred CeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc--cccCCCCcEEEEeccccccccccccccc
Q 024866 88 NELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF--LVFAPNLKSLRLFDCGAMEEIISVGKIA 165 (261)
Q Consensus 88 ~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~ 165 (261)
+.|+++++. +..+.. .....+++|+.|+++++ +++.++. +..+++|++|+++++. ++.+..
T Consensus 112 ~~L~l~~n~-l~~~~~---------~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~----- 174 (270)
T 2o6q_A 112 AELRLDRNQ-LKSLPP---------RVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPE----- 174 (270)
T ss_dssp CEEECCSSC-CCCCCT---------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCT-----
T ss_pred CEEECCCCc-cCeeCH---------HHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCc-CcEeCh-----
Confidence 999999865 332210 11357899999999998 5776643 5678999999999873 443322
Q ss_pred ccCcccCCcccCCcccEEeccCCcccccccCC-CccCCccceeeeccCc
Q 024866 166 ETPEMMGHISPFENLQSLDLDDLPHLKSIFWK-PLPFTHLKKMAVLMCD 213 (261)
Q Consensus 166 ~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~ 213 (261)
..+..+++|+.|++.+. +++.++.. ...+++|+.|.++++|
T Consensus 175 ------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 175 ------GAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp ------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ------hHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 13456899999999987 57777654 3458899999998765
No 46
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.82 E-value=1.1e-08 Score=99.61 Aligned_cols=38 Identities=13% Similarity=0.034 Sum_probs=21.4
Q ss_pred cCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEeccc
Q 024866 116 FVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCG 153 (261)
Q Consensus 116 ~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~ 153 (261)
..+++|+.|++++|.--..++.++.+++|++|++++|.
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~ 234 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK 234 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSC
T ss_pred ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCc
Confidence 45666666666666322223334556666666666653
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.81 E-value=4.6e-09 Score=92.63 Aligned_cols=33 Identities=15% Similarity=0.016 Sum_probs=19.2
Q ss_pred cCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866 200 PFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR 233 (261)
Q Consensus 200 ~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 233 (261)
.+++|+.|+++++ +++.+|........+|+.++
T Consensus 275 ~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~ 307 (353)
T 2z80_A 275 QISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIW 307 (353)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred cccCCCEEECCCC-CCCccCHHHHhcCCCCCEEE
Confidence 4567777777776 45666655433345555543
No 48
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.78 E-value=1.4e-08 Score=86.30 Aligned_cols=158 Identities=16% Similarity=0.183 Sum_probs=105.1
Q ss_pred ccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCC
Q 024866 18 LFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIE 97 (261)
Q Consensus 18 ~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~ 97 (261)
+.......+..+..+++|+.|++.......++ ....+.+|+.|+++++ .+..++ .+..+++|+.|+++++.
T Consensus 26 l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~L~~N-~i~~~~---~l~~l~~L~~L~L~~N~- 96 (263)
T 1xeu_A 26 LGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA----GMQFFTNLKELHLSHN-QISDLS---PLKDLTKLEELSVNRNR- 96 (263)
T ss_dssp HTCSCTTSEECHHHHTTCSEEECTTSCCCCCT----TGGGCTTCCEEECCSS-CCCCCG---GGTTCSSCCEEECCSSC-
T ss_pred hcCCCcccccchhhcCcCcEEECcCCCcccch----HHhhCCCCCEEECCCC-ccCCCh---hhccCCCCCEEECCCCc-
Confidence 33444444445666777888877754433322 1223457888888876 445553 27788888888888764
Q ss_pred cceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccccccCcccCCcccC
Q 024866 98 LEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPF 177 (261)
Q Consensus 98 Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~ 177 (261)
+..+ +.... ++|+.|+++++ +++++..+..+++|++|+++++. ++.+. .+..+
T Consensus 97 l~~l-----------~~~~~-~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N~-i~~~~-------------~l~~l 149 (263)
T 1xeu_A 97 LKNL-----------NGIPS-ACLSRLFLDNN-ELRDTDSLIHLKNLEILSIRNNK-LKSIV-------------MLGFL 149 (263)
T ss_dssp CSCC-----------TTCCC-SSCCEEECCSS-CCSBSGGGTTCTTCCEEECTTSC-CCBCG-------------GGGGC
T ss_pred cCCc-----------Ccccc-CcccEEEccCC-ccCCChhhcCcccccEEECCCCc-CCCCh-------------HHccC
Confidence 3322 22122 88999999988 68777777788999999998863 44331 34567
Q ss_pred CcccEEeccCCcccccccCCCccCCccceeeeccCc
Q 024866 178 ENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCD 213 (261)
Q Consensus 178 p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~ 213 (261)
++|+.|++.++. ++.+ .....+++|+.|.+++++
T Consensus 150 ~~L~~L~L~~N~-i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 150 SKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTCCEEECTTSC-CCBC-TTSTTCCCCCEEEEEEEE
T ss_pred CCCCEEECCCCc-Ccch-HHhccCCCCCEEeCCCCc
Confidence 899999998864 5555 335568899999988874
No 49
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=5.9e-08 Score=95.70 Aligned_cols=170 Identities=13% Similarity=0.083 Sum_probs=92.8
Q ss_pred hhhhhhcccCCceEEEEEcchHH--------------H-HHHhhCcc--cccceeEEEEcCCCCCCcccccccccccCCC
Q 024866 25 LVQELLGLKYLEVLELTLGSYQA--------------L-QILLSSNK--LKSCIRSLQLRLVRDTPSIIDATAFADLNHL 87 (261)
Q Consensus 25 ~l~eL~~L~~L~~L~i~~~~~~~--------------l-~~l~~~~~--l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L 87 (261)
...++..+++|+.|++....... + ..++.... -+++|+.|+|++|.-...++ ..++++++|
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP--~~l~~L~~L 517 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP--DFLYDLPEL 517 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC--GGGGGCSSC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh--HHHhCCCCC
Confidence 34568889999999998543222 0 01333333 45689999999987655554 578899999
Q ss_pred CeEEEeccC----------------------CcceEecccccccccCCC---CcCCCCCcEEEEecCCCCCCCCccccCC
Q 024866 88 NELYIFKGI----------------------ELEELKIDYTEIVRKRRE---PFVFRSLHRVIIGECHKLKDVTFLVFAP 142 (261)
Q Consensus 88 ~~L~i~~c~----------------------~Le~l~~~~~~~~~~~p~---~~~~~~L~~L~l~~C~~l~~l~~l~~lp 142 (261)
+.|+++++. +|+.+.+...... .+|. .+.+++|+.|+++++ ++..++.++.++
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp~~~~L~ 595 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHN-KVRHLEAFGTNV 595 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTS-CCCBCCCCCTTS
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCC-CcccchhhcCCC
Confidence 999999886 3333333322221 2222 344555555555554 233444344455
Q ss_pred CCcEEEEecccccccccccccccccCcccCCcccCCc-ccEEeccCCcccccccCCCcc--CCccceeeeccC
Q 024866 143 NLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFEN-LQSLDLDDLPHLKSIFWKPLP--FTHLKKMAVLMC 212 (261)
Q Consensus 143 ~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~-L~~L~L~~~~~L~~i~~~~~~--~p~L~~L~i~~C 212 (261)
+|++|+++++. +.. ++..+..+++ |+.|++.++. ++.++..... .++|+.|.+++|
T Consensus 596 ~L~~L~Ls~N~-l~~------------lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 596 KLTDLKLDYNQ-IEE------------IPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp EESEEECCSSC-CSC------------CCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSS
T ss_pred cceEEECcCCc-ccc------------chHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCC
Confidence 55555555542 221 2223444555 6666665543 4444322111 123555555544
No 50
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.74 E-value=1.3e-07 Score=74.34 Aligned_cols=134 Identities=19% Similarity=0.185 Sum_probs=96.7
Q ss_pred ccceeEEEEcCCCCCC--cccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCC-
Q 024866 58 KSCIRSLQLRLVRDTP--SIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKD- 134 (261)
Q Consensus 58 ~~~L~~L~L~~c~~l~--~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~- 134 (261)
.++++.|+++++. +. .++ ..+..+++|+.|++++|. +..+ +....+++|+.|+++++ ++..
T Consensus 23 ~~~L~~L~l~~n~-l~~~~i~--~~~~~l~~L~~L~l~~n~-l~~~-----------~~~~~l~~L~~L~Ls~N-~l~~~ 86 (168)
T 2ell_A 23 PAAVRELVLDNCK-SNDGKIE--GLTAEFVNLEFLSLINVG-LISV-----------SNLPKLPKLKKLELSEN-RIFGG 86 (168)
T ss_dssp TTSCSEEECCSCB-CBTTBCS--SCCGGGGGCCEEEEESSC-CCCC-----------SSCCCCSSCCEEEEESC-CCCSC
T ss_pred cccCCEEECCCCC-CChhhHH--HHHHhCCCCCEEeCcCCC-CCCh-----------hhhccCCCCCEEECcCC-cCchH
Confidence 4689999999985 34 443 456889999999999986 5433 22356899999999998 5666
Q ss_pred CCcc-ccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccC----CCccCCccceeee
Q 024866 135 VTFL-VFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW----KPLPFTHLKKMAV 209 (261)
Q Consensus 135 l~~l-~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~----~~~~~p~L~~L~i 209 (261)
++.. ..+++|++|++++| .++.+... ..+..+++|+.|++.+++ +..++. ....+++|+.|++
T Consensus 87 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~----------~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 154 (168)
T 2ell_A 87 LDMLAEKLPNLTHLNLSGN-KLKDISTL----------EPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDG 154 (168)
T ss_dssp CCHHHHHCTTCCEEECBSS-SCCSSGGG----------GGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETT
T ss_pred HHHHHhhCCCCCEEeccCC-ccCcchhH----------HHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecC
Confidence 4333 45999999999998 44443210 144568999999999875 666654 3446899999999
Q ss_pred ccCccCCCCCC
Q 024866 210 LMCDQLRKPPL 220 (261)
Q Consensus 210 ~~C~~L~~lp~ 220 (261)
.+|. ++.+|.
T Consensus 155 ~~n~-~~~~~~ 164 (168)
T 2ell_A 155 YDRE-DQEAPD 164 (168)
T ss_dssp EETT-SCBCCS
T ss_pred CCCC-hhhccc
Confidence 9985 445554
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.74 E-value=7.6e-09 Score=90.03 Aligned_cols=166 Identities=13% Similarity=0.049 Sum_probs=82.4
Q ss_pred cccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEecc--------CCcceEe
Q 024866 31 GLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKG--------IELEELK 102 (261)
Q Consensus 31 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c--------~~Le~l~ 102 (261)
.+++|+.|+++......+.. .....+.+|+.|+++++. +..+ ..+..+++|+.|+++++ +.|+.+.
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~-l~~~---~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISA--ADLAPFTKLELLNLSSNV-LYET---LDLESLSTLRTLDLNNNYVQELLVGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCH--HHHTTCTTCCEEECTTSC-CEEE---EEETTCTTCCEEECCSSEEEEEEECTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCH--HHhhCCCcCCEEECCCCc-CCcc---hhhhhcCCCCEEECcCCccccccCCCCcCEEE
Confidence 34566666665332221110 001123467777777653 2322 22566777777777655 2334443
Q ss_pred cccccccccCCCCcCCCCCcEEEEecCCCCCCCC--ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcc
Q 024866 103 IDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT--FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENL 180 (261)
Q Consensus 103 ~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L 180 (261)
+......+. +. ..+++|+.|++.++ +++.+. ....+++|++|+++++. +..+.... -...+++|
T Consensus 106 l~~n~l~~~-~~-~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~----------~~~~l~~L 171 (317)
T 3o53_A 106 AANNNISRV-SC-SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAE----------LAASSDTL 171 (317)
T ss_dssp CCSSCCSEE-EE-CCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGG----------GGGGTTTC
T ss_pred CCCCccCCc-Cc-cccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCC-CCcccHHH----------HhhccCcC
Confidence 322221111 11 34667777777766 455442 23456777777777652 33222100 11235677
Q ss_pred cEEeccCCcccccccCCCccCCccceeeeccCccCCCCC
Q 024866 181 QSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPP 219 (261)
Q Consensus 181 ~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp 219 (261)
+.|++.++. ++.+.. ...+++|+.|.++++ +++.+|
T Consensus 172 ~~L~L~~N~-l~~~~~-~~~l~~L~~L~Ls~N-~l~~l~ 207 (317)
T 3o53_A 172 EHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSN-KLAFMG 207 (317)
T ss_dssp CEEECTTSC-CCEEEC-CCCCTTCCEEECCSS-CCCEEC
T ss_pred CEEECCCCc-Cccccc-ccccccCCEEECCCC-cCCcch
Confidence 777777654 555532 223677777777665 333443
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.73 E-value=5.9e-09 Score=91.91 Aligned_cols=202 Identities=15% Similarity=0.077 Sum_probs=117.7
Q ss_pred eeEeeeccccccccCCCcchh--hhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccc
Q 024866 6 WFNFHEASEESVLFGGGEVLV--QELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFAD 83 (261)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~l--~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~ 83 (261)
.|+.++..+..++++.....+ ..+..+++|+.|++.......+..- ......+|++|+++++ .+..++....+..
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~ 147 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS--WFKPLSSLTFLNLLGN-PYKTLGETSLFSH 147 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHH--HHTTCTTCSEEECTTC-CCSSSCSSCSCTT
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHh--HhCCCccCCEEECCCC-CCcccCchhhhcc
Confidence 455667788888887765444 4578889999999875432222110 0112357899999886 4455532135778
Q ss_pred cCCCCeEEEeccCCcceEecc--------------ccccccc-CCCCcCCCCCcEEEEecCCCCCCCCc--cccCCCCcE
Q 024866 84 LNHLNELYIFKGIELEELKID--------------YTEIVRK-RREPFVFRSLHRVIIGECHKLKDVTF--LVFAPNLKS 146 (261)
Q Consensus 84 l~~L~~L~i~~c~~Le~l~~~--------------~~~~~~~-~p~~~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~ 146 (261)
+++|+.|+++++..+..+... .....+. +.....+++|++|++.++. +..++. ...+++|++
T Consensus 148 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~ 226 (353)
T 2z80_A 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVEC 226 (353)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEE
T ss_pred CCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccE
Confidence 899999999988655544211 1100011 1123455666666666652 333321 234677777
Q ss_pred EEEecccccccccccccc-----cc---------------cCcccCCcccCCcccEEeccCCcccccccCCC-ccCCccc
Q 024866 147 LRLFDCGAMEEIISVGKI-----AE---------------TPEMMGHISPFENLQSLDLDDLPHLKSIFWKP-LPFTHLK 205 (261)
Q Consensus 147 L~i~~C~~L~~i~~~~~~-----~~---------------~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~-~~~p~L~ 205 (261)
|+++++. +..+...... .. ...++..+..+++|+.|++.++ +++.++... ..+++|+
T Consensus 227 L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~ 304 (353)
T 2z80_A 227 LELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQ 304 (353)
T ss_dssp EEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred EECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCC
Confidence 7777753 2222110000 00 0012223456889999999987 478887654 5789999
Q ss_pred eeeeccCc
Q 024866 206 KMAVLMCD 213 (261)
Q Consensus 206 ~L~i~~C~ 213 (261)
+|++++++
T Consensus 305 ~L~L~~N~ 312 (353)
T 2z80_A 305 KIWLHTNP 312 (353)
T ss_dssp EEECCSSC
T ss_pred EEEeeCCC
Confidence 99998885
No 53
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.72 E-value=5.6e-08 Score=82.59 Aligned_cols=147 Identities=20% Similarity=0.184 Sum_probs=75.0
Q ss_pred cceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCC---
Q 024866 59 SCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDV--- 135 (261)
Q Consensus 59 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l--- 135 (261)
++|+.|+++++ .+..++. ..+..+++|+.|+++++. +..+. ....+.+++|+.|+++++ ++..+
T Consensus 76 ~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~---------~~~~~~l~~L~~L~l~~n-~l~~~~l~ 142 (276)
T 2z62_A 76 SHLSTLILTGN-PIQSLAL-GAFSGLSSLQKLVAVETN-LASLE---------NFPIGHLKTLKELNVAHN-LIQSFKLP 142 (276)
T ss_dssp TTCCEEECTTC-CCCEECT-TTTTTCTTCCEEECTTSC-CCCST---------TCCCTTCTTCCEEECCSS-CCCCCCCC
T ss_pred cCCCEEECCCC-ccCccCh-hhhcCCccccEEECCCCC-ccccC---------chhcccCCCCCEEECcCC-ccceecCc
Confidence 35555555554 2233322 334555556655555443 11110 001356778888888776 45442
Q ss_pred CccccCCCCcEEEEecccccccccccccccccCcccCCcccCCccc----EEeccCCcccccccCCCccCCccceeeecc
Q 024866 136 TFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQ----SLDLDDLPHLKSIFWKPLPFTHLKKMAVLM 211 (261)
Q Consensus 136 ~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~----~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~ 211 (261)
..+..+++|++|+++++. ++.+... .+..+++|+ +|++.+.. ++.+........+|+.|++++
T Consensus 143 ~~~~~l~~L~~L~Ls~N~-l~~~~~~-----------~~~~l~~L~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~ 209 (276)
T 2z62_A 143 EYFSNLTNLEHLDLSSNK-IQSIYCT-----------DLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDT 209 (276)
T ss_dssp GGGGGCTTCCEEECCSSC-CCEECGG-----------GGHHHHTCTTCCEEEECCSSC-CCEECTTSSCSCCEEEEECCS
T ss_pred hhhccCCCCCEEECCCCC-CCcCCHH-----------HhhhhhhccccceeeecCCCc-ccccCccccCCCcccEEECCC
Confidence 234567888888887763 3333211 112233333 55555533 555544444455677777777
Q ss_pred CccCCCCCCCCccccCCceEE
Q 024866 212 CDQLRKPPLDSNSAKERKFVI 232 (261)
Q Consensus 212 C~~L~~lp~~~~~~~~~l~~~ 232 (261)
+. ++.+|........+|+.+
T Consensus 210 n~-l~~~~~~~~~~l~~L~~L 229 (276)
T 2z62_A 210 NQ-LKSVPDGIFDRLTSLQKI 229 (276)
T ss_dssp SC-CSCCCTTTTTTCCSCCEE
T ss_pred Cc-eeecCHhHhcccccccEE
Confidence 64 666665443334455544
No 54
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.72 E-value=1.6e-08 Score=95.63 Aligned_cols=196 Identities=15% Similarity=0.130 Sum_probs=103.4
Q ss_pred eeeEeeeccccccccCCCcchhhh--hhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCccccccccc
Q 024866 5 GWFNFHEASEESVLFGGGEVLVQE--LLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFA 82 (261)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~e--L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~ 82 (261)
+.|+.++..+..++++.....+.. +..+++|+.|++.......+. ......+++|+.|+++++. +..++ ++
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~-l~~~~----~~ 189 (597)
T 3oja_B 117 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSNR-LTHVD----LS 189 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC--TTTTTTCTTCCEEECTTSC-CSBCC----GG
T ss_pred HHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC--hhhhhcCCcCcEEECcCCC-CCCcC----hh
Confidence 345667777888887776444332 567888888888743321110 1112234577888887753 33332 23
Q ss_pred ccCCCCeEEEe-------------------ccC----------CcceEecccccccccCCCCcCCCCCcEEEEecCCCCC
Q 024866 83 DLNHLNELYIF-------------------KGI----------ELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLK 133 (261)
Q Consensus 83 ~l~~L~~L~i~-------------------~c~----------~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~ 133 (261)
.+++|+.|+++ ++. +|+.+.+..... ..++..+.+++|+.|+++++ .+.
T Consensus 190 ~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l-~~~~~l~~l~~L~~L~Ls~N-~l~ 267 (597)
T 3oja_B 190 LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL-TDTAWLLNYPGLVEVDLSYN-ELE 267 (597)
T ss_dssp GCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCC-CCCGGGGGCTTCSEEECCSS-CCC
T ss_pred hhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCC-CCChhhccCCCCCEEECCCC-ccC
Confidence 33444444333 221 122222221111 11222345666666666665 344
Q ss_pred CC--CccccCCCCcEEEEecccccccccccccc-c----------ccCcccCCcccCCcccEEeccCCcccccccCCCcc
Q 024866 134 DV--TFLVFAPNLKSLRLFDCGAMEEIISVGKI-A----------ETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLP 200 (261)
Q Consensus 134 ~l--~~l~~lp~L~~L~i~~C~~L~~i~~~~~~-~----------~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~ 200 (261)
.+ ..++.+++|++|+++++ .+..+...... . ....++..+..+++|+.|++.++. +..+. ...
T Consensus 268 ~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~ 343 (597)
T 3oja_B 268 KIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLK--LST 343 (597)
T ss_dssp EEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCT
T ss_pred CCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC-CCCcC--hhh
Confidence 33 12345566666666654 22222111000 0 011234455678999999999976 66664 557
Q ss_pred CCccceeeeccCc
Q 024866 201 FTHLKKMAVLMCD 213 (261)
Q Consensus 201 ~p~L~~L~i~~C~ 213 (261)
+++|+.|.+++++
T Consensus 344 ~~~L~~L~l~~N~ 356 (597)
T 3oja_B 344 HHTLKNLTLSHND 356 (597)
T ss_dssp TCCCSEEECCSSC
T ss_pred cCCCCEEEeeCCC
Confidence 8999999998875
No 55
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.70 E-value=5.7e-08 Score=88.10 Aligned_cols=80 Identities=15% Similarity=0.054 Sum_probs=38.3
Q ss_pred ccccccccCCCcch--hhhhhcccCCceEEEEEcchH-HHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCC
Q 024866 12 ASEESVLFGGGEVL--VQELLGLKYLEVLELTLGSYQ-ALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLN 88 (261)
Q Consensus 12 ~~~~~~~~~~~~~~--l~eL~~L~~L~~L~i~~~~~~-~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~ 88 (261)
..+..++++..... ...+..+++|+.|++...... .+. ......+++|++|+++++. +..+.. ..++.+++|+
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~--~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~ 106 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR--NNTFRGLSSLIILKLDYNQ-FLQLET-GAFNGLANLE 106 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEEC--TTTTTTCTTCCEEECTTCT-TCEECT-TTTTTCTTCC
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceEC--cccccccccCCEEeCCCCc-cCccCh-hhccCcccCC
Confidence 34555665554333 245666677777766633211 000 0111123456666666643 233322 3455566666
Q ss_pred eEEEecc
Q 024866 89 ELYIFKG 95 (261)
Q Consensus 89 ~L~i~~c 95 (261)
+|++++|
T Consensus 107 ~L~L~~n 113 (455)
T 3v47_A 107 VLTLTQC 113 (455)
T ss_dssp EEECTTS
T ss_pred EEeCCCC
Confidence 6666554
No 56
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.70 E-value=1.3e-07 Score=81.41 Aligned_cols=100 Identities=15% Similarity=0.103 Sum_probs=64.3
Q ss_pred cCCCCCcEEEEecCCCCCCCC--ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccccc
Q 024866 116 FVFRSLHRVIIGECHKLKDVT--FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKS 193 (261)
Q Consensus 116 ~~~~~L~~L~l~~C~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~ 193 (261)
..+++|+.|+++++ +++.++ .+..+++|++|+++++ .+..+.. ..+..+++|+.|++.+. +++.
T Consensus 97 ~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~ 162 (290)
T 1p9a_G 97 QTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTLPP-----------GLLTPTPKLEKLSLANN-NLTE 162 (290)
T ss_dssp TTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCT-----------TTTTTCTTCCEEECTTS-CCSC
T ss_pred ccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCC-CCCccCh-----------hhcccccCCCEEECCCC-cCCc
Confidence 45667777777765 455553 2355677777777765 3333221 13456789999999886 4777
Q ss_pred ccCCC-ccCCccceeeeccCccCCCCCCCCccccCCceE
Q 024866 194 IFWKP-LPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFV 231 (261)
Q Consensus 194 i~~~~-~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~ 231 (261)
++.+. ..+++|+.|.++++ +++.+|...... ..++.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~-~~L~~ 199 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGS-HLLPF 199 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT-CCCSE
T ss_pred cCHHHhcCcCCCCEEECCCC-cCCccChhhccc-ccCCe
Confidence 77654 35899999999887 467788654432 34444
No 57
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.70 E-value=2.7e-07 Score=77.38 Aligned_cols=80 Identities=18% Similarity=0.125 Sum_probs=34.8
Q ss_pred ceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC--c
Q 024866 60 CIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT--F 137 (261)
Q Consensus 60 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~--~ 137 (261)
.++.|+++++. +..+.. ..+..+++|++|+++++. +..+.. .....+++|+.|+++++ +++.+. .
T Consensus 36 ~l~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~---------~~~~~l~~L~~L~L~~n-~l~~~~~~~ 102 (251)
T 3m19_A 36 DTEKLDLQSTG-LATLSD-ATFRGLTKLTWLNLDYNQ-LQTLSA---------GVFDDLTELGTLGLANN-QLASLPLGV 102 (251)
T ss_dssp TCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECTTSC-CCCCCT---------TTTTTCTTCCEEECTTS-CCCCCCTTT
T ss_pred CCCEEEccCCC-cCccCH-hHhcCcccCCEEECCCCc-CCccCH---------hHhccCCcCCEEECCCC-cccccChhH
Confidence 45555555532 233322 334555555555555542 221100 01134455555555554 344332 1
Q ss_pred cccCCCCcEEEEecc
Q 024866 138 LVFAPNLKSLRLFDC 152 (261)
Q Consensus 138 l~~lp~L~~L~i~~C 152 (261)
+..+++|++|+++++
T Consensus 103 ~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 103 FDHLTQLDKLYLGGN 117 (251)
T ss_dssp TTTCTTCCEEECCSS
T ss_pred hcccCCCCEEEcCCC
Confidence 234555555555553
No 58
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.69 E-value=1e-07 Score=93.57 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=16.4
Q ss_pred ceeEEEEcCCCCCCcccccccccccCCCCeEEEecc
Q 024866 60 CIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKG 95 (261)
Q Consensus 60 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c 95 (261)
+|+.|+++++. +..+.+...++++++|+.|+++++
T Consensus 124 ~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 124 ALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp SCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESS
T ss_pred CCCEEECCCCc-ccccccchhHhhCCCCCEEECCCC
Confidence 45555555432 222222134555666666666554
No 59
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.69 E-value=1.2e-08 Score=99.30 Aligned_cols=49 Identities=18% Similarity=-0.004 Sum_probs=34.6
Q ss_pred CCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCC
Q 024866 172 GHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPL 220 (261)
Q Consensus 172 ~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~ 220 (261)
..+..+++|+.|++.++.--..++.....+++|+.|++++|+--..+|.
T Consensus 508 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 3556678888888888764445555556678888888888876666664
No 60
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.68 E-value=2e-08 Score=87.36 Aligned_cols=194 Identities=12% Similarity=0.047 Sum_probs=108.8
Q ss_pred eEeeeccccccccC-CC--cchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccc
Q 024866 7 FNFHEASEESVLFG-GG--EVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFAD 83 (261)
Q Consensus 7 ~~~~~~~~~~~~~~-~~--~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~ 83 (261)
|+-++..+..++++ .. ......+..+++|++|++....... .+......+.+|++|+++++.-...++ ..+..
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~ 147 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG--AIPDFLSQIKTLVTLDFSYNALSGTLP--PSISS 147 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE--ECCGGGGGCTTCCEEECCSSEEESCCC--GGGGG
T ss_pred HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC--cCCHHHhCCCCCCEEeCCCCccCCcCC--hHHhc
Confidence 44566777788874 32 3455678889999999998543220 111122234578899998864221222 46788
Q ss_pred cCCCCeEEEeccC--------------CcceEecccccccccCCC-CcCCCCCcEEEEecCCCCCCC--CccccCCCCcE
Q 024866 84 LNHLNELYIFKGI--------------ELEELKIDYTEIVRKRRE-PFVFRSLHRVIIGECHKLKDV--TFLVFAPNLKS 146 (261)
Q Consensus 84 l~~L~~L~i~~c~--------------~Le~l~~~~~~~~~~~p~-~~~~~~L~~L~l~~C~~l~~l--~~l~~lp~L~~ 146 (261)
+++|++|+++++. .|+.+.+......+..|. ...++ |+.|+++++ ++... ..+..+++|++
T Consensus 148 l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 225 (313)
T 1ogq_A 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN-MLEGDASVLFGSDKNTQK 225 (313)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS-EEEECCGGGCCTTSCCSE
T ss_pred CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC-cccCcCCHHHhcCCCCCE
Confidence 8889988887654 233333322221112222 23333 778887776 34432 23456888888
Q ss_pred EEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccc-cccCCCccCCccceeeeccCccCCCCCC
Q 024866 147 LRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLK-SIFWKPLPFTHLKKMAVLMCDQLRKPPL 220 (261)
Q Consensus 147 L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~-~i~~~~~~~p~L~~L~i~~C~~L~~lp~ 220 (261)
|+++++.- ...+. .+..+++|++|++.++. +. .++.....+++|+.|+++++.--..+|.
T Consensus 226 L~L~~N~l-~~~~~------------~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 226 IHLAKNSL-AFDLG------------KVGLSKNLNGLDLRNNR-IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EECCSSEE-CCBGG------------GCCCCTTCCEEECCSSC-CEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred EECCCCce-eeecC------------cccccCCCCEEECcCCc-ccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 88888642 21111 12345667777776654 33 3333344566677777766644334554
No 61
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.67 E-value=1.8e-07 Score=86.44 Aligned_cols=116 Identities=16% Similarity=0.088 Sum_probs=66.5
Q ss_pred CcCCCCCcEEEEecCCCCCCCC----ccccCCCCcEEEEeccccccccccccc--ccccCc-------c-cCCcccC-Cc
Q 024866 115 PFVFRSLHRVIIGECHKLKDVT----FLVFAPNLKSLRLFDCGAMEEIISVGK--IAETPE-------M-MGHISPF-EN 179 (261)
Q Consensus 115 ~~~~~~L~~L~l~~C~~l~~l~----~l~~lp~L~~L~i~~C~~L~~i~~~~~--~~~~~~-------~-~~~~~~~-p~ 179 (261)
.+.+++|+.|+++++ ++..+. .++.+++|++|+++++.--..+..... ...... + ......+ ++
T Consensus 344 ~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~ 422 (520)
T 2z7x_B 344 CGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR 422 (520)
T ss_dssp CCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTT
T ss_pred hccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhccc
Confidence 355667777777666 344321 134567777777776542211221100 000000 0 0011122 57
Q ss_pred ccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866 180 LQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR 233 (261)
Q Consensus 180 L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 233 (261)
|+.|+++++ +++.++.....+++|+.|++++| +++.+|.........|+.+.
T Consensus 423 L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 423 IKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIW 474 (520)
T ss_dssp CCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEE
Confidence 888888877 47777766668999999999998 68888876444445666644
No 62
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.67 E-value=1.3e-07 Score=87.87 Aligned_cols=175 Identities=14% Similarity=0.047 Sum_probs=111.5
Q ss_pred eeeEeeeccccccccCCCcch-----hhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccc
Q 024866 5 GWFNFHEASEESVLFGGGEVL-----VQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDAT 79 (261)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-----l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~ 79 (261)
++|+.++..+..++++..... ...+..+++|+.|++.......+.........+++|+.|+++++ .+..++ .
T Consensus 328 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp--~ 404 (549)
T 2z81_A 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMP--D 404 (549)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCC--S
T ss_pred HHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCccCC--h
Confidence 455556777777877765433 22356778888888774433333221111223457888888887 445553 4
Q ss_pred cccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEeccccccccc
Q 024866 80 AFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEII 159 (261)
Q Consensus 80 ~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~ 159 (261)
.+..+++|+.|+++++. +..+ |. ..+++|+.|+++++ +++.+ ...+++|++|+++++ .++.+.
T Consensus 405 ~~~~~~~L~~L~Ls~N~-l~~l-----------~~-~~~~~L~~L~Ls~N-~l~~~--~~~l~~L~~L~Ls~N-~l~~ip 467 (549)
T 2z81_A 405 SCQWPEKMRFLNLSSTG-IRVV-----------KT-CIPQTLEVLDVSNN-NLDSF--SLFLPRLQELYISRN-KLKTLP 467 (549)
T ss_dssp CCCCCTTCCEEECTTSC-CSCC-----------CT-TSCTTCSEEECCSS-CCSCC--CCCCTTCCEEECCSS-CCSSCC
T ss_pred hhcccccccEEECCCCC-cccc-----------cc-hhcCCceEEECCCC-Chhhh--cccCChhcEEECCCC-ccCcCC
Confidence 56777888888888775 3322 11 22468888888887 56654 356888888888887 444332
Q ss_pred ccccccccCcccCCcccCCcccEEeccCCcccccccCC-CccCCccceeeeccCc
Q 024866 160 SVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWK-PLPFTHLKKMAVLMCD 213 (261)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~ 213 (261)
. ...+++|+.|++++. +++.+... ...+++|+.|++++++
T Consensus 468 ~-------------~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 468 D-------------ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp C-------------GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred C-------------cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 1 134778888888886 47766543 3467888888888877
No 63
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.67 E-value=4.1e-08 Score=90.04 Aligned_cols=55 Identities=9% Similarity=-0.062 Sum_probs=29.0
Q ss_pred eeeccccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCC
Q 024866 9 FHEASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLV 69 (261)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c 69 (261)
-++..+..+++......+ .+..+++|+.|++.......+. ....++|+.|+++++
T Consensus 83 ~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 83 QNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARN 137 (457)
T ss_dssp TCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTS
T ss_pred cCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCC
Confidence 345566666666655444 3666777777777643222211 122345666666554
No 64
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.66 E-value=6.2e-08 Score=88.80 Aligned_cols=177 Identities=12% Similarity=0.020 Sum_probs=85.7
Q ss_pred eccccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeE
Q 024866 11 EASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNEL 90 (261)
Q Consensus 11 ~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L 90 (261)
+..+..++++.....+..+..+++|+.|++.......+. ...+.+|+.|+++++. +..++ ++.+++|++|
T Consensus 42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-----~~~l~~L~~L~Ls~N~-l~~~~----~~~l~~L~~L 111 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-----LSQNTNLTYLACDSNK-LTNLD----VTPLTKLTYL 111 (457)
T ss_dssp TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-----CTTCTTCSEEECCSSC-CSCCC----CTTCTTCCEE
T ss_pred CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-----cccCCCCCEEECcCCC-Cceee----cCCCCcCCEE
Confidence 344445555544444445555566666655533222210 1123355666666542 33331 4555666666
Q ss_pred EEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEeccccccccccccccc-----
Q 024866 91 YIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIA----- 165 (261)
Q Consensus 91 ~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~----- 165 (261)
+++++. +..+ + .+.+++|+.|++.++ +++.+. ++.+++|++|++++|..+..+.. ....
T Consensus 112 ~L~~N~-l~~l-----------~-~~~l~~L~~L~l~~N-~l~~l~-l~~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L 175 (457)
T 3bz5_A 112 NCDTNK-LTKL-----------D-VSQNPLLTYLNCARN-TLTEID-VSHNTQLTELDCHLNKKITKLDV-TPQTQLTTL 175 (457)
T ss_dssp ECCSSC-CSCC-----------C-CTTCTTCCEEECTTS-CCSCCC-CTTCTTCCEEECTTCSCCCCCCC-TTCTTCCEE
T ss_pred ECCCCc-CCee-----------c-CCCCCcCCEEECCCC-ccceec-cccCCcCCEEECCCCCccccccc-ccCCcCCEE
Confidence 665542 2211 1 244555555555554 344432 34455555555555543332210 0000
Q ss_pred -----ccCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCC
Q 024866 166 -----ETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPP 219 (261)
Q Consensus 166 -----~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp 219 (261)
..+++ .+..+++|+.|++.++. ++.+. ...+++|+.|+++++ +++.+|
T Consensus 176 ~ls~n~l~~l--~l~~l~~L~~L~l~~N~-l~~~~--l~~l~~L~~L~Ls~N-~l~~ip 228 (457)
T 3bz5_A 176 DCSFNKITEL--DVSQNKLLNRLNCDTNN-ITKLD--LNQNIQLTFLDCSSN-KLTEID 228 (457)
T ss_dssp ECCSSCCCCC--CCTTCTTCCEEECCSSC-CSCCC--CTTCTTCSEEECCSS-CCSCCC
T ss_pred ECCCCcccee--ccccCCCCCEEECcCCc-CCeec--cccCCCCCEEECcCC-cccccC
Confidence 00011 14456777777777653 55542 446788888888876 355565
No 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.66 E-value=5e-08 Score=84.03 Aligned_cols=171 Identities=19% Similarity=0.093 Sum_probs=103.6
Q ss_pred ccccccccCCCcch--hhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCe
Q 024866 12 ASEESVLFGGGEVL--VQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNE 89 (261)
Q Consensus 12 ~~~~~~~~~~~~~~--l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~ 89 (261)
..+..++++..... ...+..+++|+.|.+.......+ ... ....+|+.|++++. .+..++ ..+..+++|+.
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~-~~l~~L~~L~Ls~N-~l~~l~--~~~~~l~~L~~ 104 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL---QVD-GTLPVLGTLDLSHN-QLQSLP--LLGQTLPALTV 104 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE---ECC-SCCTTCCEEECCSS-CCSSCC--CCTTTCTTCCE
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc---cCC-CCCCcCCEEECCCC-cCCcCc--hhhccCCCCCE
Confidence 34444555443322 23456666666666653221111 111 22346677777664 334442 34566677777
Q ss_pred EEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc--cccCCCCcEEEEeccccccccccccccccc
Q 024866 90 LYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF--LVFAPNLKSLRLFDCGAMEEIISVGKIAET 167 (261)
Q Consensus 90 L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~ 167 (261)
|+++++. +..+. ......+++|+.|+++++ +++.++. +..+++|++|+++++ .++.+..
T Consensus 105 L~l~~N~-l~~l~---------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~------- 165 (290)
T 1p9a_G 105 LDVSFNR-LTSLP---------LGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELPA------- 165 (290)
T ss_dssp EECCSSC-CCCCC---------SSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCT-------
T ss_pred EECCCCc-CcccC---------HHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCC-cCCccCH-------
Confidence 7776653 22221 011357889999999987 6776643 357899999999986 4444332
Q ss_pred CcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCc
Q 024866 168 PEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCD 213 (261)
Q Consensus 168 ~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~ 213 (261)
..+..+++|+.|++.+.. ++.++......++|+.|.+.+.|
T Consensus 166 ----~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 166 ----GLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp ----TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred ----HHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCCC
Confidence 123458899999998864 88888777778889999887543
No 66
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.65 E-value=6.3e-08 Score=92.27 Aligned_cols=70 Identities=10% Similarity=0.061 Sum_probs=49.7
Q ss_pred hhhhhhcccCCceEEEEEcchHH---------------HHHHhhCcc--cccceeEEEEcCCCCCCcccccccccccCCC
Q 024866 25 LVQELLGLKYLEVLELTLGSYQA---------------LQILLSSNK--LKSCIRSLQLRLVRDTPSIIDATAFADLNHL 87 (261)
Q Consensus 25 ~l~eL~~L~~L~~L~i~~~~~~~---------------l~~l~~~~~--l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L 87 (261)
...++.++++|+.|++....... ...++.... -+++|+.|++++|.-...++ ..++++++|
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L 275 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP--TFLKALPEM 275 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC--TTTTTCSSC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh--HHHhcCCCC
Confidence 34568889999999998543222 011444444 56789999999986555554 578899999
Q ss_pred CeEEEeccC
Q 024866 88 NELYIFKGI 96 (261)
Q Consensus 88 ~~L~i~~c~ 96 (261)
+.|+++++.
T Consensus 276 ~~L~Ls~n~ 284 (636)
T 4eco_A 276 QLINVACNR 284 (636)
T ss_dssp CEEECTTCT
T ss_pred CEEECcCCC
Confidence 999999876
No 67
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.64 E-value=1.3e-07 Score=88.91 Aligned_cols=40 Identities=13% Similarity=-0.019 Sum_probs=25.4
Q ss_pred cccCCcccEEeccCCccccccc-CCCccCCccceeeeccCcc
Q 024866 174 ISPFENLQSLDLDDLPHLKSIF-WKPLPFTHLKKMAVLMCDQ 214 (261)
Q Consensus 174 ~~~~p~L~~L~L~~~~~L~~i~-~~~~~~p~L~~L~i~~C~~ 214 (261)
+..+++|+.|++.++. +.... .....+++|++|.+++|.-
T Consensus 421 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l 461 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNHF 461 (606)
T ss_dssp TTTCTTCCEEECTTCC-CBTTCTTTTTTCTTCCEEECTTCBC
T ss_pred hhCcccCCEEECCCCc-cCCcCHHHHhCCCCCCEEECCCCCC
Confidence 4556777888877764 33332 2234577888888887753
No 68
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.63 E-value=1.9e-07 Score=89.13 Aligned_cols=150 Identities=16% Similarity=0.148 Sum_probs=71.4
Q ss_pred cceeEEEEcCCCCCCcccccccccccCCCCeEEEeccC-----------------CcceEecccccccccCC-CCcCCCC
Q 024866 59 SCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGI-----------------ELEELKIDYTEIVRKRR-EPFVFRS 120 (261)
Q Consensus 59 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~-----------------~Le~l~~~~~~~~~~~p-~~~~~~~ 120 (261)
++|+.|+++++. +..+.. ..+..+++|+.|++++|. .|+.+.+......+..| ....+++
T Consensus 329 ~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 329 KCLEHLNMEDND-IPGIKS-NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp TTCCEEECCSCC-BCCCCT-TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCCEEECCCCc-cCCCCh-hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 345555555542 222322 345666777777776542 33333332221111111 2345667
Q ss_pred CcEEEEecCCCCC-CCC--ccccCCCCcEEEEecccccccccccccc---------------cccCcccCCcccCCcccE
Q 024866 121 LHRVIIGECHKLK-DVT--FLVFAPNLKSLRLFDCGAMEEIISVGKI---------------AETPEMMGHISPFENLQS 182 (261)
Q Consensus 121 L~~L~l~~C~~l~-~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~---------------~~~~~~~~~~~~~p~L~~ 182 (261)
|+.|+++++. +. .++ ....+++|++|++++|. +..+...... ......+..+..+++|+.
T Consensus 407 L~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 407 LEVLDLGLNE-IGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp CCEEECCSSC-CEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCEEeCCCCc-CccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 7777777663 32 221 23456777777777664 2211110000 000012234455666666
Q ss_pred EeccCCcccccccCC-CccCCccceeeeccCc
Q 024866 183 LDLDDLPHLKSIFWK-PLPFTHLKKMAVLMCD 213 (261)
Q Consensus 183 L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~ 213 (261)
|++.++. ++.+... ...+++|+.|+++++.
T Consensus 485 L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~ 515 (680)
T 1ziw_A 485 LDLSNNN-IANINDDMLEGLEKLEILDLQHNN 515 (680)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCC-CCcCChhhhccccccCEEeCCCCC
Confidence 6666643 5555433 2346677777776663
No 69
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.63 E-value=1.4e-07 Score=93.01 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=18.0
Q ss_pred cceeEEEEcCCCCCCcccccccccccCC-CCeEEEecc
Q 024866 59 SCIRSLQLRLVRDTPSIIDATAFADLNH-LNELYIFKG 95 (261)
Q Consensus 59 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~-L~~L~i~~c 95 (261)
++|+.|+++++. +..++ ..+..+++ |+.|+++++
T Consensus 595 ~~L~~L~Ls~N~-l~~lp--~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 595 VKLTDLKLDYNQ-IEEIP--EDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp SEESEEECCSSC-CSCCC--TTSCEECTTCCEEECCSS
T ss_pred CcceEEECcCCc-cccch--HHHhhccccCCEEECcCC
Confidence 345566665543 22332 34556666 666666654
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.63 E-value=4.2e-08 Score=85.14 Aligned_cols=100 Identities=14% Similarity=0.095 Sum_probs=55.2
Q ss_pred cCCCCCcEEEEecCCCCCCCCc-----cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcc
Q 024866 116 FVFRSLHRVIIGECHKLKDVTF-----LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPH 190 (261)
Q Consensus 116 ~~~~~L~~L~l~~C~~l~~l~~-----l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~ 190 (261)
+.+++|+.|+++++ +++.+.. ...+++|++|+++++. +...+.. .....+++|+.|++++..
T Consensus 198 ~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~----------~~~~~l~~L~~L~Ls~N~- 264 (312)
T 1wwl_A 198 LKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGA----------PSCDWPSQLNSLNLSFTG- 264 (312)
T ss_dssp TSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCC----------SCCCCCTTCCEEECTTSC-
T ss_pred ccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccch----------hhhhhcCCCCEEECCCCc-
Confidence 34556666666655 3442211 1245666666666542 2222110 122346788888888764
Q ss_pred cccccCCCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866 191 LKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR 233 (261)
Q Consensus 191 L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 233 (261)
++.++.... ++|++|+++++ +++.+|. ......|+.++
T Consensus 265 l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~--~~~l~~L~~L~ 302 (312)
T 1wwl_A 265 LKQVPKGLP--AKLSVLDLSYN-RLDRNPS--PDELPQVGNLS 302 (312)
T ss_dssp CSSCCSSCC--SEEEEEECCSS-CCCSCCC--TTTSCEEEEEE
T ss_pred cChhhhhcc--CCceEEECCCC-CCCCChh--HhhCCCCCEEe
Confidence 666654332 78888888887 5666665 22345666654
No 71
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.62 E-value=4.5e-08 Score=85.08 Aligned_cols=199 Identities=14% Similarity=0.019 Sum_probs=120.0
Q ss_pred cccccCCCc----chhhhhhcccCCceEEEEE-cchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCe
Q 024866 15 ESVLFGGGE----VLVQELLGLKYLEVLELTL-GSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNE 89 (261)
Q Consensus 15 ~~~~~~~~~----~~l~eL~~L~~L~~L~i~~-~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~ 89 (261)
..++++... .....+..+++|+.|++.. ..... .+......+++|++|+++++.-...++ ..+..+++|++
T Consensus 54 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~ 129 (313)
T 1ogq_A 54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG--PIPPAIAKLTQLHYLYITHTNVSGAIP--DFLSQIKTLVT 129 (313)
T ss_dssp EEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES--CCCGGGGGCTTCSEEEEEEECCEEECC--GGGGGCTTCCE
T ss_pred EEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc--cCChhHhcCCCCCEEECcCCeeCCcCC--HHHhCCCCCCE
Confidence 445555443 3457888999999999984 22110 112222335689999999874322332 56889999999
Q ss_pred EEEecc-------------CCcceEecccccccccCC-CCcCCC-CCcEEEEecCCCCC-CC-CccccCCCCcEEEEecc
Q 024866 90 LYIFKG-------------IELEELKIDYTEIVRKRR-EPFVFR-SLHRVIIGECHKLK-DV-TFLVFAPNLKSLRLFDC 152 (261)
Q Consensus 90 L~i~~c-------------~~Le~l~~~~~~~~~~~p-~~~~~~-~L~~L~l~~C~~l~-~l-~~l~~lp~L~~L~i~~C 152 (261)
|+++++ ++|+.+.+......+..| ..+.++ +|+.|+++++ ++. .+ ..+..++ |++|+++++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGGGGGCC-CSEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC-eeeccCChHHhCCc-ccEEECcCC
Confidence 998765 334444443332221222 234555 7888888776 333 22 1234455 999999987
Q ss_pred cccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCCCCccccCCceEE
Q 024866 153 GAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVI 232 (261)
Q Consensus 153 ~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 232 (261)
. ++..+ +..+..+++|+.|++.+.. +.........+++|++|+++++.--..+|.... ....|+.+
T Consensus 208 ~-l~~~~-----------~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L 273 (313)
T 1ogq_A 208 M-LEGDA-----------SVLFGSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSL 273 (313)
T ss_dssp E-EEECC-----------GGGCCTTSCCSEEECCSSE-ECCBGGGCCCCTTCCEEECCSSCCEECCCGGGG-GCTTCCEE
T ss_pred c-ccCcC-----------CHHHhcCCCCCEEECCCCc-eeeecCcccccCCCCEEECcCCcccCcCChHHh-cCcCCCEE
Confidence 4 33222 1245678999999999875 443333345679999999999865445664322 23455554
Q ss_pred E
Q 024866 233 R 233 (261)
Q Consensus 233 ~ 233 (261)
.
T Consensus 274 ~ 274 (313)
T 1ogq_A 274 N 274 (313)
T ss_dssp E
T ss_pred E
Confidence 3
No 72
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.62 E-value=5.9e-07 Score=79.10 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=38.8
Q ss_pred cccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866 174 ISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR 233 (261)
Q Consensus 174 ~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 233 (261)
+..+++|+.|++++. +|+.++. ..+.+|+.|.+.+|.+++.+|.-.. -.+|+...
T Consensus 198 f~~l~~L~~LdLs~N-~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~--l~~L~~l~ 252 (350)
T 4ay9_X 198 FHGASGPVILDISRT-RIHSLPS--YGLENLKKLRARSTYNLKKLPTLEK--LVALMEAS 252 (350)
T ss_dssp TTTEECCSEEECTTS-CCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTT--CCSCCEEE
T ss_pred hccCcccchhhcCCC-CcCccCh--hhhccchHhhhccCCCcCcCCCchh--CcChhhCc
Confidence 456677888888775 4777763 3477888888889999999885332 35666655
No 73
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.62 E-value=4.4e-07 Score=79.00 Aligned_cols=58 Identities=17% Similarity=0.133 Sum_probs=41.4
Q ss_pred CcccCCcccEEeccCCcccccccC-CCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866 173 HISPFENLQSLDLDDLPHLKSIFW-KPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR 233 (261)
Q Consensus 173 ~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 233 (261)
.+..+++|+.|++.+.. ++.+.. ....+++|+.|++++| +++.+|..... ...|+.+.
T Consensus 211 ~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~-l~~L~~L~ 269 (330)
T 1xku_A 211 SLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLAD-HKYIQVVY 269 (330)
T ss_dssp GGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTT-CSSCCEEE
T ss_pred HhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCC-cCccCChhhcc-CCCcCEEE
Confidence 45678899999998865 666654 3446899999999999 67788765332 35566654
No 74
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.62 E-value=1.2e-08 Score=95.52 Aligned_cols=42 Identities=14% Similarity=0.023 Sum_probs=30.1
Q ss_pred ccCCcccEEeccCCcccccc--cCCCccCCccceeeeccCccCCCC
Q 024866 175 SPFENLQSLDLDDLPHLKSI--FWKPLPFTHLKKMAVLMCDQLRKP 218 (261)
Q Consensus 175 ~~~p~L~~L~L~~~~~L~~i--~~~~~~~p~L~~L~i~~C~~L~~l 218 (261)
..+++|+.|++++|+ +..- ......+++|++|++++|. ++.-
T Consensus 485 ~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 485 RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence 457889999999998 5432 2122357999999999998 5543
No 75
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.61 E-value=2.9e-07 Score=86.12 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=21.7
Q ss_pred ccceeEEEEcCCCCCCcccccccccccCCCCeEEEecc
Q 024866 58 KSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKG 95 (261)
Q Consensus 58 ~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c 95 (261)
+.+|++|+++++. +..++.+..++.+++|++|+++++
T Consensus 120 l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 120 MASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp CTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECS
T ss_pred cccCCEEECCCCC-ccccCchHhhcccCcccEEecCCC
Confidence 3456667766653 344433245667777777777654
No 76
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.58 E-value=7.7e-08 Score=89.57 Aligned_cols=60 Identities=10% Similarity=0.067 Sum_probs=39.5
Q ss_pred CcccCCcccEEeccCCccc-ccccCCCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866 173 HISPFENLQSLDLDDLPHL-KSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR 233 (261)
Q Consensus 173 ~~~~~p~L~~L~L~~~~~L-~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 233 (261)
.+..+++|+.|++.++.-- ..++.....+++|+.|++++|. ++.++........+|+.+.
T Consensus 440 ~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 500 (570)
T 2z63_A 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLN 500 (570)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEE
T ss_pred hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEe
Confidence 4556889999999888633 2455455678999999999984 4444333333346666654
No 77
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.56 E-value=6.1e-07 Score=85.39 Aligned_cols=51 Identities=18% Similarity=0.100 Sum_probs=26.3
Q ss_pred CCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866 177 FENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR 233 (261)
Q Consensus 177 ~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 233 (261)
+++|+.|+++++ +++.++. .+++|+.|++++| +++.+|.. .....+|+.+.
T Consensus 240 l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~-l~~l~~L~~L~ 290 (622)
T 3g06_A 240 PSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPES-LIHLSSETTVN 290 (622)
T ss_dssp CTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGG-GGGSCTTCEEE
T ss_pred CCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHH-HhhccccCEEE
Confidence 345555555554 3444432 4566666666666 45566543 22235555544
No 78
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.56 E-value=1.2e-06 Score=80.86 Aligned_cols=34 Identities=15% Similarity=-0.029 Sum_probs=19.2
Q ss_pred eeccccccccCCCcch---hhhhhcccCCceEEEEEc
Q 024866 10 HEASEESVLFGGGEVL---VQELLGLKYLEVLELTLG 43 (261)
Q Consensus 10 ~~~~~~~~~~~~~~~~---l~eL~~L~~L~~L~i~~~ 43 (261)
.+..+..++++..... ...+..+++|+.|++...
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT 125 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCc
Confidence 3445555555554332 256666777777777653
No 79
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.56 E-value=6.2e-07 Score=85.40 Aligned_cols=48 Identities=13% Similarity=0.014 Sum_probs=27.6
Q ss_pred CcccCCcccEEeccCCc------ccccccCCCccCCccceeeeccCccCCCCCCC
Q 024866 173 HISPFENLQSLDLDDLP------HLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLD 221 (261)
Q Consensus 173 ~~~~~p~L~~L~L~~~~------~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~ 221 (261)
.+..+++|+.|++++.+ -...++.....+++|+.|++++|.- +.+|..
T Consensus 531 ~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 531 QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK 584 (636)
T ss_dssp GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence 44556777777775432 2233343444567777777777654 666654
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.55 E-value=7.8e-08 Score=88.81 Aligned_cols=187 Identities=11% Similarity=-0.012 Sum_probs=95.8
Q ss_pred cCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEecc--------CCcceEecc
Q 024866 33 KYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKG--------IELEELKID 104 (261)
Q Consensus 33 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c--------~~Le~l~~~ 104 (261)
++|+.|+++......+. ......+++|+.|+|+++. +..+ ..++.+++|+.|+++++ +.|+.+.+.
T Consensus 34 ~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~-l~~~---~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQIS--AADLAPFTKLELLNLSSNV-LYET---LDLESLSTLRTLDLNNNYVQELLVGPSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCC--GGGGTTCTTCCEEECTTSC-CEEE---EECTTCTTCCEEECCSSEEEEEEECTTCCEEECC
T ss_pred CCccEEEeeCCcCCCCC--HHHHhCCCCCCEEEeeCCC-CCCC---cccccCCCCCEEEecCCcCCCCCCCCCcCEEECc
Confidence 46777777643322211 1112223467777777653 2322 12566677777777655 233333332
Q ss_pred cccccccCCCCcCCCCCcEEEEecCCCCCCCC--ccccCCCCcEEEEecccccccccccccc---ccc----------Cc
Q 024866 105 YTEIVRKRREPFVFRSLHRVIIGECHKLKDVT--FLVFAPNLKSLRLFDCGAMEEIISVGKI---AET----------PE 169 (261)
Q Consensus 105 ~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~---~~~----------~~ 169 (261)
.....+. +. ..+++|+.|++.++ ++..+. .++.+++|++|+++++. +..++..... ... ++
T Consensus 108 ~N~l~~~-~~-~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 108 NNNISRV-SC-SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp SSCCCCE-EE-CCCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCcCCCC-Cc-cccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCcccc
Confidence 2211111 11 34566666666665 344432 23446666666666642 2222111100 000 01
Q ss_pred ccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866 170 MMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR 233 (261)
Q Consensus 170 ~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 233 (261)
+ .....+++|+.|++++.. ++.++.....+++|+.|+++++. +..+|.... ....|+.+.
T Consensus 184 ~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~-~l~~L~~L~ 243 (487)
T 3oja_A 184 V-KGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEKALR-FSQNLEHFD 243 (487)
T ss_dssp E-ECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-CCEECTTCC-CCTTCCEEE
T ss_pred c-cccccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCc-Ccccchhhc-cCCCCCEEE
Confidence 1 122347888888888864 77776656678899999998863 556665422 235565544
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.54 E-value=6.2e-08 Score=82.27 Aligned_cols=179 Identities=20% Similarity=0.099 Sum_probs=110.4
Q ss_pred eeEeeeccccccccCCCcchhh--hhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccc
Q 024866 6 WFNFHEASEESVLFGGGEVLVQ--ELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFAD 83 (261)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~--eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~ 83 (261)
.|..++..+..++++.....+. .+..+++|+.|++.......+. ......+.+|+.|++.++. +..+.. ..++.
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~ 122 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA--LGAFSGLSSLQKLVAVETN-LASLEN-FPIGH 122 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC--TTTTTTCTTCCEEECTTSC-CCCSTT-CCCTT
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC--hhhhcCCccccEEECCCCC-ccccCc-hhccc
Confidence 3445566677777666543333 3666777777777532211110 0112234589999999864 344432 35788
Q ss_pred cCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC--ccccCCCCc----EEEEeccccccc
Q 024866 84 LNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT--FLVFAPNLK----SLRLFDCGAMEE 157 (261)
Q Consensus 84 l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~--~l~~lp~L~----~L~i~~C~~L~~ 157 (261)
+++|+.|+++++. +..+.+ +.....+++|+.|+++++ +++.+. .+..+++|+ +|+++++. +..
T Consensus 123 l~~L~~L~l~~n~-l~~~~l--------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~l~L~ls~n~-l~~ 191 (276)
T 2z62_A 123 LKTLKELNVAHNL-IQSFKL--------PEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNF 191 (276)
T ss_dssp CTTCCEEECCSSC-CCCCCC--------CGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCEEEECCSSC-CCE
T ss_pred CCCCCEEECcCCc-cceecC--------chhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccccceeeecCCCc-ccc
Confidence 9999999999875 322211 112356889999999998 566553 233344555 78887753 333
Q ss_pred ccccccccccCcccCCcccCCcccEEeccCCcccccccCCC-ccCCccceeeeccC
Q 024866 158 IISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKP-LPFTHLKKMAVLMC 212 (261)
Q Consensus 158 i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~-~~~p~L~~L~i~~C 212 (261)
+.. ......+|+.|++.+.. ++.++... ..+++|+.|++++.
T Consensus 192 ~~~------------~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 192 IQP------------GAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp ECT------------TSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSS
T ss_pred cCc------------cccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCC
Confidence 322 22334589999999876 88776543 45899999999854
No 82
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.53 E-value=1.8e-06 Score=79.03 Aligned_cols=127 Identities=15% Similarity=0.157 Sum_probs=71.5
Q ss_pred ccccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEE
Q 024866 12 ASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELY 91 (261)
Q Consensus 12 ~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~ 91 (261)
..+..++++.....+.++..+++|+.|++....... .+....+|+.|+++++ .+..+ +.++.+++|+.|+
T Consensus 132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~------lp~~~~~L~~L~L~~n-~l~~l---~~~~~l~~L~~L~ 201 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK------LPDLPPSLEFIAAGNN-QLEEL---PELQNLPFLTAIY 201 (454)
T ss_dssp TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC------CCCCCTTCCEEECCSS-CCSSC---CCCTTCTTCCEEE
T ss_pred CCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc------cCCCcccccEEECcCC-cCCcC---ccccCCCCCCEEE
Confidence 455556655554445566777777777776432211 1122347888888876 34444 3578888888888
Q ss_pred EeccC---------CcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecc
Q 024866 92 IFKGI---------ELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDC 152 (261)
Q Consensus 92 i~~c~---------~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C 152 (261)
++++. .|+.+.+..... ..+|..+.+++|+.|+++++ +++.++ ..+++|++|+++++
T Consensus 202 l~~N~l~~l~~~~~~L~~L~l~~n~l-~~lp~~~~l~~L~~L~l~~N-~l~~l~--~~~~~L~~L~l~~N 267 (454)
T 1jl5_A 202 ADNNSLKKLPDLPLSLESIVAGNNIL-EELPELQNLPFLTTIYADNN-LLKTLP--DLPPSLEALNVRDN 267 (454)
T ss_dssp CCSSCCSSCCCCCTTCCEEECCSSCC-SSCCCCTTCTTCCEEECCSS-CCSSCC--SCCTTCCEEECCSS
T ss_pred CCCCcCCcCCCCcCcccEEECcCCcC-CcccccCCCCCCCEEECCCC-cCCccc--ccccccCEEECCCC
Confidence 87763 344554433322 13344556677777777765 344432 12344555555443
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.53 E-value=2e-07 Score=80.65 Aligned_cols=98 Identities=13% Similarity=0.089 Sum_probs=52.5
Q ss_pred CCCCCcEEEEecCCCCCCCCc-----cccCCCCcEEEEecccccccccccccccccCcccCCccc---CCcccEEeccCC
Q 024866 117 VFRSLHRVIIGECHKLKDVTF-----LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISP---FENLQSLDLDDL 188 (261)
Q Consensus 117 ~~~~L~~L~l~~C~~l~~l~~-----l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~---~p~L~~L~L~~~ 188 (261)
.+++|+.|++++| +++.++. .+.+++|++|+++++. +..+. +..+.. +++|++|+++++
T Consensus 195 ~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~-----------p~~~~~~~~~~~L~~L~Ls~N 261 (310)
T 4glp_A 195 KFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS-LRATV-----------NPSAPRCMWSSALNSLNLSFA 261 (310)
T ss_dssp SSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCC-----------CSCCSSCCCCTTCCCEECCSS
T ss_pred cCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC-CCccc-----------hhhHHhccCcCcCCEEECCCC
Confidence 4556666666655 3443321 1345666666666543 22221 111222 368888888775
Q ss_pred cccccccCCCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866 189 PHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR 233 (261)
Q Consensus 189 ~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 233 (261)
. ++.++... +++|+.|+++++ +++.+|... ....|+.++
T Consensus 262 ~-l~~lp~~~--~~~L~~L~Ls~N-~l~~~~~~~--~l~~L~~L~ 300 (310)
T 4glp_A 262 G-LEQVPKGL--PAKLRVLDLSSN-RLNRAPQPD--ELPEVDNLT 300 (310)
T ss_dssp C-CCSCCSCC--CSCCSCEECCSC-CCCSCCCTT--SCCCCSCEE
T ss_pred C-CCchhhhh--cCCCCEEECCCC-cCCCCchhh--hCCCccEEE
Confidence 4 66665432 378888888877 455555421 234555543
No 84
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.52 E-value=3.4e-07 Score=87.15 Aligned_cols=38 Identities=11% Similarity=-0.067 Sum_probs=31.8
Q ss_pred cCCcccEEeccCCcccccccCCCccCCccceeeeccCcc
Q 024866 176 PFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQ 214 (261)
Q Consensus 176 ~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~ 214 (261)
.+++|+.|++.++ +++.++.....+++|+.|.+++++-
T Consensus 259 ~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 259 LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 5688999999997 5888876667789999999998853
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.51 E-value=5.1e-07 Score=79.54 Aligned_cols=193 Identities=15% Similarity=0.088 Sum_probs=96.1
Q ss_pred eccccccccCCCcchhh--hhhcccCCceEEEEEcchH-HHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCC
Q 024866 11 EASEESVLFGGGEVLVQ--ELLGLKYLEVLELTLGSYQ-ALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHL 87 (261)
Q Consensus 11 ~~~~~~~~~~~~~~~l~--eL~~L~~L~~L~i~~~~~~-~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L 87 (261)
+..+..+++......+. .+.++++|+.|++..-... .++. .....+.+++.+.+.++.++..++. ..+..+++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~--~~f~~L~~l~~~l~~~~N~l~~l~~-~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA--DVFSNLPKLHEIRIEKANNLLYINP-EAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECT--TSBCSCTTCCEEEEEEETTCCEECT-TSBCCCTTC
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh--hHhhcchhhhhhhcccCCcccccCc-hhhhhcccc
Confidence 34566777777666554 3788899999998843211 0110 1111223455555555667777654 556777888
Q ss_pred CeEEEeccCCcceE--------------ecccccccccCCC---CcCCCCCcEEEEecCCCCCCCCc-cccCCCCcEEEE
Q 024866 88 NELYIFKGIELEEL--------------KIDYTEIVRKRRE---PFVFRSLHRVIIGECHKLKDVTF-LVFAPNLKSLRL 149 (261)
Q Consensus 88 ~~L~i~~c~~Le~l--------------~~~~~~~~~~~p~---~~~~~~L~~L~l~~C~~l~~l~~-l~~lp~L~~L~i 149 (261)
+.|+++++.- ..+ .+.....-..++. .+....++.|++++. +++.++. ....++|++|.+
T Consensus 107 ~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l 184 (350)
T 4ay9_X 107 QYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNL 184 (350)
T ss_dssp CEEEEEEECC-SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEEC
T ss_pred cccccccccc-ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhccccchhHHhh
Confidence 8888776531 111 0000000000010 011122333444332 2332211 011233444444
Q ss_pred ecccccccccccc--cccc----------cCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeecc
Q 024866 150 FDCGAMEEIISVG--KIAE----------TPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLM 211 (261)
Q Consensus 150 ~~C~~L~~i~~~~--~~~~----------~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~ 211 (261)
.+++.++.+.... .... .+.++ ...|.+|+.|++.++.+++.++. ...+++|+.+.+.+
T Consensus 185 ~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp--~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 185 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLP--SYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC--SSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred ccCCcccCCCHHHhccCcccchhhcCCCCcCccC--hhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 4444443332210 0000 00111 13478899999999999999984 55789999998854
No 86
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.48 E-value=4.1e-07 Score=86.73 Aligned_cols=98 Identities=15% Similarity=0.103 Sum_probs=48.4
Q ss_pred CCcEEEEecCCCCCCCC--ccccCCCCcEEEEecccccccccccccc--ccc----------------Cccc----CCcc
Q 024866 120 SLHRVIIGECHKLKDVT--FLVFAPNLKSLRLFDCGAMEEIISVGKI--AET----------------PEMM----GHIS 175 (261)
Q Consensus 120 ~L~~L~l~~C~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~--~~~----------------~~~~----~~~~ 175 (261)
+|+.|+++++ ++..+. .++.+++|++|+++++. +..+...... ... ..++ ..+.
T Consensus 249 ~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~ 326 (680)
T 1ziw_A 249 NLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNN-IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326 (680)
T ss_dssp CCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSCC-BSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTT
T ss_pred CCCEEECCCC-CcCccCcccccCcccccEeeCCCCc-cCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcc
Confidence 4777777776 344432 34567777777777753 2222210000 000 0001 1334
Q ss_pred cCCcccEEeccCCcccccccCC-CccCCccceeeeccCc-cCCCCCC
Q 024866 176 PFENLQSLDLDDLPHLKSIFWK-PLPFTHLKKMAVLMCD-QLRKPPL 220 (261)
Q Consensus 176 ~~p~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~-~L~~lp~ 220 (261)
.+++|++|++.++. +..+... ...+++|++|++++|. .++.++.
T Consensus 327 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~ 372 (680)
T 1ziw_A 327 WLKCLEHLNMEDND-IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372 (680)
T ss_dssp TCTTCCEEECCSCC-BCCCCTTTTTTCTTCCEEECTTCBSCCCEECT
T ss_pred cCCCCCEEECCCCc-cCCCChhHhccccCCcEEECCCCchhhhhcch
Confidence 45666666666543 3333322 3346777777777764 2444443
No 87
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.48 E-value=1.7e-06 Score=84.96 Aligned_cols=64 Identities=20% Similarity=0.141 Sum_probs=32.3
Q ss_pred eeeEeeeccccccccCCCcc--hhhh--hhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCC
Q 024866 5 GWFNFHEASEESVLFGGGEV--LVQE--LLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLV 69 (261)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~--~l~e--L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c 69 (261)
+.|+.++..++.+++..... .+.. +.++++|+.|++.......+. .......+++|+.|+++++
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-LHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC-CCGGGGTCSSCCEEEEESS
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc-cchhHhhCCCCCEEECCCC
Confidence 34556666677777666433 2333 666677777776643221110 0001122345666666654
No 88
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.47 E-value=1.6e-06 Score=73.38 Aligned_cols=122 Identities=16% Similarity=0.170 Sum_probs=91.9
Q ss_pred ccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc
Q 024866 58 KSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF 137 (261)
Q Consensus 58 ~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~ 137 (261)
+.+|+.|+++++ ++..+ +.+..+++|+.|+++++. +..+ +....+++|+.|+++++ ++++++.
T Consensus 40 l~~L~~L~l~~n-~i~~l---~~l~~l~~L~~L~L~~N~-i~~~-----------~~l~~l~~L~~L~L~~N-~l~~l~~ 102 (263)
T 1xeu_A 40 LSGVQNFNGDNS-NIQSL---AGMQFFTNLKELHLSHNQ-ISDL-----------SPLKDLTKLEELSVNRN-RLKNLNG 102 (263)
T ss_dssp HTTCSEEECTTS-CCCCC---TTGGGCTTCCEEECCSSC-CCCC-----------GGGTTCSSCCEEECCSS-CCSCCTT
T ss_pred cCcCcEEECcCC-Ccccc---hHHhhCCCCCEEECCCCc-cCCC-----------hhhccCCCCCEEECCCC-ccCCcCc
Confidence 357899999987 55666 467889999999999875 3322 11467899999999998 6777765
Q ss_pred cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCc
Q 024866 138 LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCD 213 (261)
Q Consensus 138 l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~ 213 (261)
... ++|++|+++++ .++.+. .+..+++|+.|++.+.. ++.+. ....+++|+.|.++++.
T Consensus 103 ~~~-~~L~~L~L~~N-~l~~~~-------------~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 103 IPS-ACLSRLFLDNN-ELRDTD-------------SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp CCC-SSCCEEECCSS-CCSBSG-------------GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSC
T ss_pred ccc-CcccEEEccCC-ccCCCh-------------hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCc
Confidence 555 99999999997 344331 34568999999998864 66664 34568999999998873
No 89
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.47 E-value=9.8e-08 Score=82.76 Aligned_cols=182 Identities=17% Similarity=0.115 Sum_probs=108.2
Q ss_pred eeccccccccCCCcc--hhhhh--hcccCCceEEEEEcchHH----HHHHhhCcccccceeEEEEcCCCCCCcccccccc
Q 024866 10 HEASEESVLFGGGEV--LVQEL--LGLKYLEVLELTLGSYQA----LQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAF 81 (261)
Q Consensus 10 ~~~~~~~~~~~~~~~--~l~eL--~~L~~L~~L~i~~~~~~~----l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l 81 (261)
++..+..+++..... ....+ ..+++|+.|++..-.... +..+... ..++|+.|+++++. +..++. ..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~--~~~~L~~L~L~~N~-l~~~~~-~~~ 169 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW--LKPGLKVLSIAQAH-SLNFSC-EQV 169 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTT--CCTTCCEEEEESCS-CCCCCT-TTC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHh--hcCCCcEEEeeCCC-CccchH-HHh
Confidence 345566666665432 22333 677888888887433221 2222111 12567888887753 344432 456
Q ss_pred cccCCCCeEEEeccCC-----------------cceEecccccccc--cCCC--CcCCCCCcEEEEecCCCCCCCC---c
Q 024866 82 ADLNHLNELYIFKGIE-----------------LEELKIDYTEIVR--KRRE--PFVFRSLHRVIIGECHKLKDVT---F 137 (261)
Q Consensus 82 ~~l~~L~~L~i~~c~~-----------------Le~l~~~~~~~~~--~~p~--~~~~~~L~~L~l~~C~~l~~l~---~ 137 (261)
+.+++|+.|+++++.- |+.+.+....... ..+. ...+++|+.|+++++ ++.... .
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~ 248 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPS 248 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSC
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhh
Confidence 7777777777776542 2223222211100 0010 135689999999988 566632 3
Q ss_pred cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCc
Q 024866 138 LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCD 213 (261)
Q Consensus 138 l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~ 213 (261)
...+++|++|+++++. ++.+.. .+. ++|+.|++++. +++.++. ...+++|+.|.+++.+
T Consensus 249 ~~~l~~L~~L~Ls~N~-l~~ip~------------~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTG-LKQVPK------------GLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCCCTTCCEEECTTSC-CSSCCS------------SCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred hhhcCCCCEEECCCCc-cChhhh------------hcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 3558999999999974 443322 222 89999999986 4777754 6678999999888753
No 90
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.47 E-value=1.3e-06 Score=72.39 Aligned_cols=128 Identities=21% Similarity=0.156 Sum_probs=83.1
Q ss_pred cceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc-
Q 024866 59 SCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF- 137 (261)
Q Consensus 59 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~- 137 (261)
.+|+.|+++++ .+..+.. ..+..+++|+.|+++++. +..+.. .....+++|+.|+++++ +++.+..
T Consensus 40 ~~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L~L~~N~-l~~i~~---------~~~~~l~~L~~L~Ls~N-~l~~l~~~ 106 (229)
T 3e6j_A 40 TNAQILYLHDN-QITKLEP-GVFDSLINLKELYLGSNQ-LGALPV---------GVFDSLTQLTVLDLGTN-QLTVLPSA 106 (229)
T ss_dssp TTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT---------TTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred CCCCEEEcCCC-ccCccCH-HHhhCccCCcEEECCCCC-CCCcCh---------hhcccCCCcCEEECCCC-cCCccChh
Confidence 57888888875 3444433 456778888888888765 332211 11246788888888877 5766643
Q ss_pred -cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCC-CccCCccceeeeccCc
Q 024866 138 -LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWK-PLPFTHLKKMAVLMCD 213 (261)
Q Consensus 138 -l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~ 213 (261)
+..+++|++|+++++ .+..+. ..+..+++|+.|++.+. +++.+... ...+++|+.|.+.+.+
T Consensus 107 ~~~~l~~L~~L~Ls~N-~l~~lp------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCN-KLTELP------------RGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTTCTTCCEEECCSS-CCCSCC------------TTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred HhCcchhhCeEeccCC-cccccC------------cccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 456888888888875 343322 24456788888888875 46666543 3357788888776653
No 91
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.46 E-value=1.1e-07 Score=75.94 Aligned_cols=89 Identities=19% Similarity=0.121 Sum_probs=38.9
Q ss_pred ceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCC-cCCCCCcEEEEecCCCCCCC--C
Q 024866 60 CIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREP-FVFRSLHRVIIGECHKLKDV--T 136 (261)
Q Consensus 60 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~-~~~~~L~~L~l~~C~~l~~l--~ 136 (261)
.|+.|++++|. ++..++ ..+..+++|++|.+++|..+..-.+..- ... ...++|++|+|++|+++++- .
T Consensus 62 ~L~~LDLs~~~-Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L------~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERL------SQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CEEEEEEESCC-CCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHH------HTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred eEeEEeCcCCC-ccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHH------HhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 35555555554 444433 3445555555555555554322100000 000 00124555555555555442 1
Q ss_pred ccccCCCCcEEEEecccccc
Q 024866 137 FLVFAPNLKSLRLFDCGAME 156 (261)
Q Consensus 137 ~l~~lp~L~~L~i~~C~~L~ 156 (261)
.+..+++|++|+|++|+.++
T Consensus 134 ~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCC
T ss_pred HHhcCCCCCEEECCCCCCCC
Confidence 22345555555555555444
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.46 E-value=2e-06 Score=69.74 Aligned_cols=127 Identities=20% Similarity=0.162 Sum_probs=64.8
Q ss_pred ceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc--
Q 024866 60 CIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF-- 137 (261)
Q Consensus 60 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~-- 137 (261)
.++.|+++++ ++..++. ..++.+++|++|+++++. +..+.. .....+++|++|++.++ +++.+..
T Consensus 29 ~l~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~---------~~~~~l~~L~~L~Ls~n-~l~~~~~~~ 95 (208)
T 2o6s_A 29 QTTYLDLETN-SLKSLPN-GVFDELTSLTQLYLGGNK-LQSLPN---------GVFNKLTSLTYLNLSTN-QLQSLPNGV 95 (208)
T ss_dssp TCSEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSSC-CCCCCT---------TTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred CCcEEEcCCC-ccCcCCh-hhhcccccCcEEECCCCc-cCccCh---------hhcCCCCCcCEEECCCC-cCCccCHhH
Confidence 5666666664 3334432 335566666666666542 322210 00134566666666665 4554432
Q ss_pred cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCC-CccCCccceeeeccC
Q 024866 138 LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWK-PLPFTHLKKMAVLMC 212 (261)
Q Consensus 138 l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C 212 (261)
+..+++|++|+++++ .+..+.. ..+..+++|+.|++.+. +++.+... ...+++|+.|++.++
T Consensus 96 ~~~l~~L~~L~L~~N-~l~~~~~-----------~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 96 FDKLTQLKELALNTN-QLQSLPD-----------GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCT-----------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred hcCccCCCEEEcCCC-cCcccCH-----------hHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCC
Confidence 345666666666664 2332221 12334566666666664 35554433 234566666666664
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.45 E-value=1.5e-06 Score=72.83 Aligned_cols=153 Identities=21% Similarity=0.222 Sum_probs=102.5
Q ss_pred cCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccC
Q 024866 33 KYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKR 112 (261)
Q Consensus 33 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~ 112 (261)
.+|+.|++.......+. ......+.+|+.|+++++ .+..+.. ..+..+++|+.|+++++. +..+..
T Consensus 35 ~~l~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~--------- 100 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLS--DATFRGLTKLTWLNLDYN-QLQTLSA-GVFDDLTELGTLGLANNQ-LASLPL--------- 100 (251)
T ss_dssp TTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTSC-CCCCCT---------
T ss_pred CCCCEEEccCCCcCccC--HhHhcCcccCCEEECCCC-cCCccCH-hHhccCCcCCEEECCCCc-ccccCh---------
Confidence 46777777643322111 111223468999999986 4555543 557889999999998865 332211
Q ss_pred CCCcCCCCCcEEEEecCCCCCCCCc--cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcc
Q 024866 113 REPFVFRSLHRVIIGECHKLKDVTF--LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPH 190 (261)
Q Consensus 113 p~~~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~ 190 (261)
.....+++|+.|+++++ +++.++. +..+++|++|+++++ .++.+.. ..+..+++|+.|++.+. +
T Consensus 101 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-----------~~~~~l~~L~~L~L~~N-~ 166 (251)
T 3m19_A 101 GVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPA-----------GAFDKLTNLQTLSLSTN-Q 166 (251)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-----------TTTTTCTTCCEEECCSS-C
T ss_pred hHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCH-----------HHcCcCcCCCEEECCCC-c
Confidence 11256889999999987 6777643 467899999999987 4544332 13456889999999886 4
Q ss_pred cccccCC-CccCCccceeeeccCc
Q 024866 191 LKSIFWK-PLPFTHLKKMAVLMCD 213 (261)
Q Consensus 191 L~~i~~~-~~~~p~L~~L~i~~C~ 213 (261)
++.+... ...+++|+.|.+.+++
T Consensus 167 l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 167 LQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCccCHHHHhCCCCCCEEEeeCCc
Confidence 7776653 3457899999998765
No 94
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.44 E-value=2.6e-07 Score=71.02 Aligned_cols=126 Identities=17% Similarity=0.179 Sum_probs=86.8
Q ss_pred ccceeEEEEcCCCCCC--cccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCC-
Q 024866 58 KSCIRSLQLRLVRDTP--SIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKD- 134 (261)
Q Consensus 58 ~~~L~~L~L~~c~~l~--~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~- 134 (261)
.++++.|+++++. +. .++ ..+..+++|+.|++++|. +..+ +..+.+++|+.|+++++ ++..
T Consensus 16 ~~~l~~L~l~~n~-l~~~~~~--~~~~~l~~L~~L~l~~n~-l~~~-----------~~~~~l~~L~~L~Ls~n-~i~~~ 79 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGKLE--GLTDEFEELEFLSTINVG-LTSI-----------ANLPKLNKLKKLELSDN-RVSGG 79 (149)
T ss_dssp GGGCSEEECTTCB-CBTTBCC--SCCTTCTTCCEEECTTSC-CCCC-----------TTCCCCTTCCEEECCSS-CCCSC
T ss_pred CccCeEEEccCCc-CChhHHH--HHHhhcCCCcEEECcCCC-CCCc-----------hhhhcCCCCCEEECCCC-cccch
Confidence 3579999999974 33 443 456888999999999874 4432 22356889999999988 4665
Q ss_pred CCc-cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccC----CCccCCccceeee
Q 024866 135 VTF-LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW----KPLPFTHLKKMAV 209 (261)
Q Consensus 135 l~~-l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~----~~~~~p~L~~L~i 209 (261)
++. ...+++|++|+++++. ++.+.. +..+..+++|+.|++.+++ ++.+.. ....+++|+.|++
T Consensus 80 ~~~~~~~l~~L~~L~ls~N~-i~~~~~----------~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 80 LEVLAEKCPNLTHLNLSGNK-IKDLST----------IEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp THHHHHHCTTCCEEECTTSC-CCSHHH----------HGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred HHHHhhhCCCCCEEECCCCc-CCChHH----------HHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 332 2458999999999874 443221 0144568899999999874 666653 2345788888876
Q ss_pred cc
Q 024866 210 LM 211 (261)
Q Consensus 210 ~~ 211 (261)
++
T Consensus 148 ~d 149 (149)
T 2je0_A 148 YD 149 (149)
T ss_dssp BC
T ss_pred CC
Confidence 53
No 95
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.44 E-value=6.5e-06 Score=76.86 Aligned_cols=115 Identities=15% Similarity=0.069 Sum_probs=69.9
Q ss_pred CcCCCCCcEEEEecCCCCCCCCc----cccCCCCcEEEEeccccccc-ccccccc--cccC-------cc-cCCcccC-C
Q 024866 115 PFVFRSLHRVIIGECHKLKDVTF----LVFAPNLKSLRLFDCGAMEE-IISVGKI--AETP-------EM-MGHISPF-E 178 (261)
Q Consensus 115 ~~~~~~L~~L~l~~C~~l~~l~~----l~~lp~L~~L~i~~C~~L~~-i~~~~~~--~~~~-------~~-~~~~~~~-p 178 (261)
.+.+++|+.|+++++ +++.+.. +..+++|++|+++++. +.. +...... .... .+ ......+ +
T Consensus 373 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 450 (562)
T 3a79_B 373 CSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP 450 (562)
T ss_dssp CCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCT
T ss_pred hcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcCcccCCEEECCCCCCCcchhhhhcC
Confidence 456777888888776 5665432 3567788888877764 222 2211000 0000 00 0011223 6
Q ss_pred cccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866 179 NLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR 233 (261)
Q Consensus 179 ~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 233 (261)
+|+.|++.++ +++.++.....+++|+.|+++++ +++.+|.........|+.+.
T Consensus 451 ~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 451 KVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIW 503 (562)
T ss_dssp TCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEE
T ss_pred cCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEE
Confidence 8999999887 68888877778999999999997 57788876333345555543
No 96
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.42 E-value=8.1e-07 Score=70.37 Aligned_cols=127 Identities=13% Similarity=0.157 Sum_probs=84.5
Q ss_pred ccceeEEEEcCCCCCCcccccccccccC-CCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC
Q 024866 58 KSCIRSLQLRLVRDTPSIIDATAFADLN-HLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT 136 (261)
Q Consensus 58 ~~~L~~L~L~~c~~l~~l~~~~~l~~l~-~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~ 136 (261)
...|+.|+++++ ++..+ +.+..+. +|+.|+++++. +..+ +....+++|+.|+++++ +++.++
T Consensus 18 ~~~L~~L~l~~n-~l~~i---~~~~~~~~~L~~L~Ls~N~-l~~~-----------~~l~~l~~L~~L~Ls~N-~l~~~~ 80 (176)
T 1a9n_A 18 AVRDRELDLRGY-KIPVI---ENLGATLDQFDAIDFSDNE-IRKL-----------DGFPLLRRLKTLLVNNN-RICRIG 80 (176)
T ss_dssp TTSCEEEECTTS-CCCSC---CCGGGGTTCCSEEECCSSC-CCEE-----------CCCCCCSSCCEEECCSS-CCCEEC
T ss_pred cCCceEEEeeCC-CCchh---HHhhhcCCCCCEEECCCCC-CCcc-----------cccccCCCCCEEECCCC-cccccC
Confidence 347889999987 44555 3455554 89999998874 4443 22356889999999887 576664
Q ss_pred c--cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCC----CccCCccceeeec
Q 024866 137 F--LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWK----PLPFTHLKKMAVL 210 (261)
Q Consensus 137 ~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~----~~~~p~L~~L~i~ 210 (261)
. ...+++|++|+++++. +..+... ..+..+++|+.|++.+.+ +..++.. ...+|+|+.|++.
T Consensus 81 ~~~~~~l~~L~~L~L~~N~-i~~~~~~----------~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNS-LVELGDL----------DPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp SCHHHHCTTCCEEECCSCC-CCCGGGG----------GGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTE
T ss_pred cchhhcCCCCCEEECCCCc-CCcchhh----------HhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCC
Confidence 2 3678999999999873 3333210 134568899999998876 4555432 3356777777666
Q ss_pred cCc
Q 024866 211 MCD 213 (261)
Q Consensus 211 ~C~ 213 (261)
++.
T Consensus 149 ~n~ 151 (176)
T 1a9n_A 149 KVK 151 (176)
T ss_dssp ECC
T ss_pred cCC
Confidence 654
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.40 E-value=3.2e-06 Score=69.55 Aligned_cols=129 Identities=19% Similarity=0.164 Sum_probs=85.4
Q ss_pred cceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc-
Q 024866 59 SCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF- 137 (261)
Q Consensus 59 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~- 137 (261)
..++.|++++. ++..++. ..+..+++|+.|+++++. +..+.. .....+++|+.|+++++ +++.++.
T Consensus 32 ~~l~~L~l~~n-~i~~i~~-~~~~~l~~L~~L~Ls~N~-i~~~~~---------~~~~~l~~L~~L~Ls~N-~l~~l~~~ 98 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPP-GAFSPYKKLRRIDLSNNQ-ISELAP---------DAFQGLRSLNSLVLYGN-KITELPKS 98 (220)
T ss_dssp TTCCEEECCSS-CCCEECT-TSSTTCTTCCEEECCSSC-CCEECT---------TTTTTCSSCCEEECCSS-CCCCCCTT
T ss_pred cCCCEEECCCC-cCCCcCH-hHhhCCCCCCEEECCCCc-CCCcCH---------HHhhCCcCCCEEECCCC-cCCccCHh
Confidence 46788888875 4555543 467788888888888764 333311 12356788888888887 5766643
Q ss_pred -cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCC-CccCCccceeeeccCc
Q 024866 138 -LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWK-PLPFTHLKKMAVLMCD 213 (261)
Q Consensus 138 -l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~ 213 (261)
...+++|++|+++++ .+..+.. ..+..+++|+.|++.+.. ++.+... ...+++|+.|.+.+.+
T Consensus 99 ~f~~l~~L~~L~L~~N-~l~~~~~-----------~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNAN-KINCLRV-----------DAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCT-----------TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HccCCCCCCEEECCCC-CCCEeCH-----------HHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence 356888899888886 3433321 244567888888888754 6666543 3347788888776643
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.37 E-value=4.6e-06 Score=68.62 Aligned_cols=130 Identities=12% Similarity=0.126 Sum_probs=88.3
Q ss_pred cceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc-
Q 024866 59 SCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF- 137 (261)
Q Consensus 59 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~- 137 (261)
..++.|++++. ++..+.....+..+++|+.|+++++. +..+.. .....+++|+.|+++++ +++.+..
T Consensus 32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~---------~~~~~l~~L~~L~Ls~N-~l~~~~~~ 99 (220)
T 2v70_A 32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNK-ITDIEE---------GAFEGASGVNEILLTSN-RLENVQHK 99 (220)
T ss_dssp TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSC-CCEECT---------TTTTTCTTCCEEECCSS-CCCCCCGG
T ss_pred CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCc-CCEECH---------HHhCCCCCCCEEECCCC-ccCccCHh
Confidence 35678888875 45555332457888999999988765 444421 12356889999999887 5666643
Q ss_pred -cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccC-CCccCCccceeeeccCc
Q 024866 138 -LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW-KPLPFTHLKKMAVLMCD 213 (261)
Q Consensus 138 -l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p~L~~L~i~~C~ 213 (261)
+..+++|++|+++++. +..+.. ..+..+++|+.|++.+. +++.+.. ....+++|+.|.+.+.+
T Consensus 100 ~~~~l~~L~~L~Ls~N~-l~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 100 MFKGLESLKTLMLRSNR-ITCVGN-----------DSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp GGTTCSSCCEEECTTSC-CCCBCT-----------TSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred HhcCCcCCCEEECCCCc-CCeECH-----------hHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 5678999999998863 433322 24456788999999885 4676643 34457888888887654
No 99
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.36 E-value=6.6e-07 Score=78.01 Aligned_cols=188 Identities=15% Similarity=0.157 Sum_probs=121.2
Q ss_pred eeEeeeccccccccCCCcchh--hhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccc
Q 024866 6 WFNFHEASEESVLFGGGEVLV--QELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFAD 83 (261)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~l--~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~ 83 (261)
.|+-++..+..++++.....+ ..+..+++|+.|++...... .+... ...+|++|+++++ .+..++. ..+..
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~l~~~--~~~~L~~L~l~~n-~i~~~~~-~~~~~ 145 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV---EIPPN--LPSSLVELRIHDN-RIRKVPK-GVFSG 145 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC---SCCSS--CCTTCCEEECCSS-CCCCCCS-GGGSS
T ss_pred HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC---ccCcc--ccccCCEEECCCC-ccCccCH-hHhCC
Confidence 455677788888887765444 67888999999998744322 12111 1257888888875 3444433 44677
Q ss_pred cCCCCeEEEeccCC--------------cceEecc---------------------cccccccC-CCCcCCCCCcEEEEe
Q 024866 84 LNHLNELYIFKGIE--------------LEELKID---------------------YTEIVRKR-REPFVFRSLHRVIIG 127 (261)
Q Consensus 84 l~~L~~L~i~~c~~--------------Le~l~~~---------------------~~~~~~~~-p~~~~~~~L~~L~l~ 127 (261)
+++|+.|+++++.- |+.+.+. .....+.. .....+++|+.|+++
T Consensus 146 l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~ 225 (332)
T 2ft3_A 146 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG 225 (332)
T ss_dssp CSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCC
T ss_pred CccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 78888888776532 2222211 11111111 124578899999999
Q ss_pred cCCCCCCCC--ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCCc------
Q 024866 128 ECHKLKDVT--FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPL------ 199 (261)
Q Consensus 128 ~C~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~------ 199 (261)
++ ++..+. .+..+++|++|+++++ .+..+. ..+..+++|+.|++.+.+ ++.+.....
T Consensus 226 ~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp------------~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~ 290 (332)
T 2ft3_A 226 HN-QIRMIENGSLSFLPTLRELHLDNN-KLSRVP------------AGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFG 290 (332)
T ss_dssp SS-CCCCCCTTGGGGCTTCCEEECCSS-CCCBCC------------TTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCC
T ss_pred CC-cCCcCChhHhhCCCCCCEEECCCC-cCeecC------------hhhhcCccCCEEECCCCC-CCccChhHccccccc
Confidence 87 566664 4678999999999987 344332 245678999999999864 776654221
Q ss_pred -cCCccceeeeccCccC
Q 024866 200 -PFTHLKKMAVLMCDQL 215 (261)
Q Consensus 200 -~~p~L~~L~i~~C~~L 215 (261)
.+++|+.|.+.+++-.
T Consensus 291 ~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 291 VKRAYYNGISLFNNPVP 307 (332)
T ss_dssp SSSCCBSEEECCSSSSC
T ss_pred cccccccceEeecCccc
Confidence 2578999999998743
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.36 E-value=5.5e-06 Score=68.53 Aligned_cols=142 Identities=15% Similarity=0.100 Sum_probs=98.9
Q ss_pred eEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc--cc
Q 024866 62 RSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF--LV 139 (261)
Q Consensus 62 ~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~--l~ 139 (261)
+.++.++ .++..++. +-.++|+.|+++++. +..+.. .....+++|+.|+++++ ++..++. +.
T Consensus 22 ~~v~c~~-~~l~~ip~----~~~~~L~~L~Ls~n~-i~~~~~---------~~~~~l~~L~~L~L~~N-~l~~i~~~~~~ 85 (229)
T 3e6j_A 22 TTVDCRS-KRHASVPA----GIPTNAQILYLHDNQ-ITKLEP---------GVFDSLINLKELYLGSN-QLGALPVGVFD 85 (229)
T ss_dssp TEEECTT-SCCSSCCS----CCCTTCSEEECCSSC-CCCCCT---------TTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred CEeEccC-CCcCccCC----CCCCCCCEEEcCCCc-cCccCH---------HHhhCccCCcEEECCCC-CCCCcChhhcc
Confidence 3455443 34555542 223789999998865 332211 12357899999999987 5777643 46
Q ss_pred cCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCC
Q 024866 140 FAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPP 219 (261)
Q Consensus 140 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp 219 (261)
.+++|++|+++++ .++.+.. ..+..+++|+.|++.+.. ++.++.....+++|+.|.++++ +++.+|
T Consensus 86 ~l~~L~~L~Ls~N-~l~~l~~-----------~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~~~ 151 (229)
T 3e6j_A 86 SLTQLTVLDLGTN-QLTVLPS-----------AVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQN-QLKSIP 151 (229)
T ss_dssp TCTTCCEEECCSS-CCCCCCT-----------TTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSS-CCCCCC
T ss_pred cCCCcCEEECCCC-cCCccCh-----------hHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCC-cCCccC
Confidence 7999999999996 4554432 134568999999998864 8888777778999999999997 778888
Q ss_pred CCCccccCCceEEE
Q 024866 220 LDSNSAKERKFVIR 233 (261)
Q Consensus 220 ~~~~~~~~~l~~~~ 233 (261)
........+|+.+.
T Consensus 152 ~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 152 HGAFDRLSSLTHAY 165 (229)
T ss_dssp TTTTTTCTTCCEEE
T ss_pred HHHHhCCCCCCEEE
Confidence 65554456666654
No 101
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.34 E-value=1.9e-06 Score=80.76 Aligned_cols=128 Identities=12% Similarity=0.123 Sum_probs=73.8
Q ss_pred cceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC--
Q 024866 59 SCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT-- 136 (261)
Q Consensus 59 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~-- 136 (261)
.+++.|+|++ ..++.++. .++..+++|++|++++|. ++.|..+ ....+++|++|+++++ +++.++
T Consensus 52 ~~~~~LdLs~-N~i~~l~~-~~f~~l~~L~~L~Ls~N~-i~~i~~~---------~f~~L~~L~~L~Ls~N-~l~~l~~~ 118 (635)
T 4g8a_A 52 FSTKNLDLSF-NPLRHLGS-YSFFSFPELQVLDLSRCE-IQTIEDG---------AYQSLSHLSTLILTGN-PIQSLALG 118 (635)
T ss_dssp TTCCEEECTT-SCCCEECT-TTTTTCTTCCEEECTTCC-CCEECTT---------TTTTCTTCCEEECTTC-CCCEECGG
T ss_pred cCCCEEEeeC-CCCCCCCH-HHHhCCCCCCEEECCCCc-CCCcChh---------HhcCCCCCCEEEccCC-cCCCCCHH
Confidence 4677777776 45666654 567777777777777764 4443211 1245677777777776 466553
Q ss_pred ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccccccc--CCCccCCccceeeeccC
Q 024866 137 FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIF--WKPLPFTHLKKMAVLMC 212 (261)
Q Consensus 137 ~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~--~~~~~~p~L~~L~i~~C 212 (261)
.+..+++|++|+++++ .++.+.. ..+..+++|+.|++.+.. ++.+. .....+++|++|.++++
T Consensus 119 ~f~~L~~L~~L~Ls~N-~l~~l~~-----------~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVET-NLASLEN-----------FPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp GGTTCTTCCEEECTTS-CCCCSTT-----------CCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS
T ss_pred HhcCCCCCCEEECCCC-cCCCCCh-----------hhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCc
Confidence 2456777777777776 3333321 123456667777776543 33322 12234566677666655
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.33 E-value=2e-07 Score=82.96 Aligned_cols=66 Identities=18% Similarity=0.130 Sum_probs=30.9
Q ss_pred hhcccCCceEEEEEcc--------hHHHHHHhhCcccccceeEEEEcCCCCCCcc---cccccccccCCCCeEEEecc
Q 024866 29 LLGLKYLEVLELTLGS--------YQALQILLSSNKLKSCIRSLQLRLVRDTPSI---IDATAFADLNHLNELYIFKG 95 (261)
Q Consensus 29 L~~L~~L~~L~i~~~~--------~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l---~~~~~l~~l~~L~~L~i~~c 95 (261)
+..+++|+.|++.... ...+..+.......++|++|+++++. +... .++..+..+++|++|++++|
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNN 132 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCC
Confidence 4455666666555321 01223332222223456666666543 2221 01134556667777777665
No 103
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.33 E-value=6.3e-08 Score=90.63 Aligned_cols=63 Identities=19% Similarity=0.122 Sum_probs=35.8
Q ss_pred cccCCceEEEEEcch--HHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccC
Q 024866 31 GLKYLEVLELTLGSY--QALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGI 96 (261)
Q Consensus 31 ~L~~L~~L~i~~~~~--~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~ 96 (261)
.+++|+.|++..... ..+..+... .++|++|++.+|..+....+......+++|++|++++|.
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~---~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKS---FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHH---CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHh---CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 466777777775332 223333211 347788888877654443221233467778888877765
No 104
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.32 E-value=3.6e-07 Score=79.00 Aligned_cols=178 Identities=16% Similarity=0.099 Sum_probs=101.1
Q ss_pred cccccccCCCc--chhhhh--hcccCCceEEEEEcchHH----HHHHhhCcccccceeEEEEcCCCCCCccccccccccc
Q 024866 13 SEESVLFGGGE--VLVQEL--LGLKYLEVLELTLGSYQA----LQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADL 84 (261)
Q Consensus 13 ~~~~~~~~~~~--~~l~eL--~~L~~L~~L~i~~~~~~~----l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l 84 (261)
.+..++++... .....+ ..+++|+.|++....... +...... ..++|+.|+++++. +..++. ..++.+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~--~~~~L~~L~Ls~n~-l~~~~~-~~~~~l 168 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW--LKPGLKVLSIAQAH-SPAFSC-EQVRAF 168 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT--BCSCCCEEEEECCS-SCCCCT-TSCCCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh--hccCCCEEEeeCCC-cchhhH-HHhccC
Confidence 45555555432 222233 567777777777433221 1111111 23467777777753 333332 456677
Q ss_pred CCCCeEEEeccCC-----------------cceEecccccccccCCC-----CcCCCCCcEEEEecCCCCCCCC--cccc
Q 024866 85 NHLNELYIFKGIE-----------------LEELKIDYTEIVRKRRE-----PFVFRSLHRVIIGECHKLKDVT--FLVF 140 (261)
Q Consensus 85 ~~L~~L~i~~c~~-----------------Le~l~~~~~~~~~~~p~-----~~~~~~L~~L~l~~C~~l~~l~--~l~~ 140 (261)
++|++|+++++.- |+.+.+..... ..++. ...+++|++|+++++ ++.+.. .+..
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~ 246 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPSAPR 246 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSCCSS
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCC-CCCccchhhHHh
Confidence 7777777776642 11111111110 00011 135689999999988 566652 1233
Q ss_pred ---CCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCc
Q 024866 141 ---APNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCD 213 (261)
Q Consensus 141 ---lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~ 213 (261)
+++|++|+++++ .++.+.. .+ +++|+.|++++.. ++.++. ...+++|+.|.+++.+
T Consensus 247 ~~~~~~L~~L~Ls~N-~l~~lp~------------~~--~~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 247 CMWSSALNSLNLSFA-GLEQVPK------------GL--PAKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCTTCCCEECCSS-CCCSCCS------------CC--CSCCSCEECCSCC-CCSCCC-TTSCCCCSCEECSSTT
T ss_pred ccCcCcCCEEECCCC-CCCchhh------------hh--cCCCCEEECCCCc-CCCCch-hhhCCCccEEECcCCC
Confidence 489999999986 3444322 22 4899999998864 776643 5567899999887754
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.29 E-value=2.4e-06 Score=66.86 Aligned_cols=126 Identities=18% Similarity=0.119 Sum_probs=87.2
Q ss_pred ccCCCCeEEEeccCCcceEecccccccccCCC-CcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEeccccccccccc
Q 024866 83 DLNHLNELYIFKGIELEELKIDYTEIVRKRRE-PFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISV 161 (261)
Q Consensus 83 ~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~-~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~ 161 (261)
..++|+.|++++|. +.. +.+|. ...+++|+.|++.+|. ++.+..+..+++|++|++++|. +...+.
T Consensus 22 ~~~~L~~L~l~~n~-l~~---------~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~- 88 (168)
T 2ell_A 22 TPAAVRELVLDNCK-SND---------GKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENR-IFGGLD- 88 (168)
T ss_dssp CTTSCSEEECCSCB-CBT---------TBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCC-CCSCCC-
T ss_pred CcccCCEEECCCCC-CCh---------hhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCc-CchHHH-
Confidence 45789999999886 320 01122 3678999999999984 8877667789999999999975 333211
Q ss_pred ccccccCcccCCcccCCcccEEeccCCccccccc--CCCccCCccceeeeccCccCCCCCC---CCccccCCceEEE
Q 024866 162 GKIAETPEMMGHISPFENLQSLDLDDLPHLKSIF--WKPLPFTHLKKMAVLMCDQLRKPPL---DSNSAKERKFVIR 233 (261)
Q Consensus 162 ~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~--~~~~~~p~L~~L~i~~C~~L~~lp~---~~~~~~~~l~~~~ 233 (261)
.....+++|+.|++.++ +++.++ .....+++|+.|.+++|+ +..+|. ........|+.+.
T Consensus 89 ----------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~ 153 (168)
T 2ell_A 89 ----------MLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLD 153 (168)
T ss_dssp ----------HHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEET
T ss_pred ----------HHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEec
Confidence 12345899999999998 577765 344568999999999984 555554 2222235566543
No 106
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.28 E-value=3.7e-07 Score=85.38 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=28.1
Q ss_pred ccCCcccEEeccCCccccccc--CCCccCCccceeeeccCcc
Q 024866 175 SPFENLQSLDLDDLPHLKSIF--WKPLPFTHLKKMAVLMCDQ 214 (261)
Q Consensus 175 ~~~p~L~~L~L~~~~~L~~i~--~~~~~~p~L~~L~i~~C~~ 214 (261)
..+++|+.|++.+|+- .... .....+++|+.|++++|+.
T Consensus 478 ~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 478 SGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred hcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 3478999999999884 3221 1233578999999999976
No 107
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.26 E-value=1.1e-05 Score=73.66 Aligned_cols=73 Identities=15% Similarity=0.075 Sum_probs=42.3
Q ss_pred cccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEE
Q 024866 13 SEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYI 92 (261)
Q Consensus 13 ~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i 92 (261)
.+..++++.....+.++..+++|+.|.+...... ..+....+|+.|+++++ .+..+ +.++.+++|+.|++
T Consensus 175 L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~------~l~~~~~~L~~L~l~~n-~l~~l---p~~~~l~~L~~L~l 244 (454)
T 1jl5_A 175 LEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK------KLPDLPLSLESIVAGNN-ILEEL---PELQNLPFLTTIYA 244 (454)
T ss_dssp CCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS------SCCCCCTTCCEEECCSS-CCSSC---CCCTTCTTCCEEEC
T ss_pred ccEEECcCCcCCcCccccCCCCCCEEECCCCcCC------cCCCCcCcccEEECcCC-cCCcc---cccCCCCCCCEEEC
Confidence 3444454444444445666677777766532211 11122246788888876 34444 34778888888888
Q ss_pred ecc
Q 024866 93 FKG 95 (261)
Q Consensus 93 ~~c 95 (261)
+++
T Consensus 245 ~~N 247 (454)
T 1jl5_A 245 DNN 247 (454)
T ss_dssp CSS
T ss_pred CCC
Confidence 775
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.23 E-value=7.3e-06 Score=72.41 Aligned_cols=134 Identities=15% Similarity=0.119 Sum_probs=91.4
Q ss_pred cceeEEEEcCCCCCCccccccccc-ccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc
Q 024866 59 SCIRSLQLRLVRDTPSIIDATAFA-DLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF 137 (261)
Q Consensus 59 ~~L~~L~L~~c~~l~~l~~~~~l~-~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~ 137 (261)
..++.|+|++. ++..++. ..+. .+++|+.|+++++. +..+.. .....+++|+.|+++++ +++.+..
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~-~~~~~~l~~L~~L~L~~N~-i~~i~~---------~~~~~l~~L~~L~Ls~N-~l~~~~~ 105 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRA-EWTPTRLTNLHSLLLSHNH-LNFISS---------EAFVPVPNLRYLDLSSN-HLHTLDE 105 (361)
T ss_dssp TTCSEEECCSS-CCCEECT-TSSSSCCTTCCEEECCSSC-CCEECT---------TTTTTCTTCCEEECCSS-CCCEECT
T ss_pred CCCCEEECCCC-CCCccCh-hhhhhcccccCEEECCCCc-CCccCh---------hhccCCCCCCEEECCCC-cCCcCCH
Confidence 45788898875 5566654 4455 78899999988764 444421 11356889999999887 5666532
Q ss_pred --cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCC----ccCCccceeeecc
Q 024866 138 --LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKP----LPFTHLKKMAVLM 211 (261)
Q Consensus 138 --l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~----~~~p~L~~L~i~~ 211 (261)
+..+++|++|+++++. +..+.. ..+..+++|+.|++.+. +++.++... ..+++|+.|++++
T Consensus 106 ~~~~~l~~L~~L~L~~N~-i~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 106 FLFSDLQALEVLLLYNNH-IVVVDR-----------NAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp TTTTTCTTCCEEECCSSC-CCEECT-----------TTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCS
T ss_pred HHhCCCcCCCEEECCCCc-ccEECH-----------HHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCC
Confidence 4678999999998864 333321 24556889999999885 477665543 3578999999988
Q ss_pred CccCCCCC
Q 024866 212 CDQLRKPP 219 (261)
Q Consensus 212 C~~L~~lp 219 (261)
+ +++.+|
T Consensus 173 N-~l~~l~ 179 (361)
T 2xot_A 173 N-KLKKLP 179 (361)
T ss_dssp S-CCCCCC
T ss_pred C-CCCccC
Confidence 6 566666
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.20 E-value=2.4e-05 Score=63.22 Aligned_cols=125 Identities=19% Similarity=0.132 Sum_probs=88.0
Q ss_pred cCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc--cccCCCCcEEEEeccccccccccc
Q 024866 84 LNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF--LVFAPNLKSLRLFDCGAMEEIISV 161 (261)
Q Consensus 84 l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~ 161 (261)
.++|+.|+++++. +..+.. .....+++|+.|++.++ +++.+.. +..+++|++|+++++. ++.+..
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~---------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~- 93 (208)
T 2o6s_A 27 PAQTTYLDLETNS-LKSLPN---------GVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPN- 93 (208)
T ss_dssp CTTCSEEECCSSC-CCCCCT---------TTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-
T ss_pred CCCCcEEEcCCCc-cCcCCh---------hhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc-CCccCH-
Confidence 4689999998874 332211 11357899999999987 6777643 4678999999999873 443322
Q ss_pred ccccccCcccCCcccCCcccEEeccCCcccccccCC-CccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866 162 GKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWK-PLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR 233 (261)
Q Consensus 162 ~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 233 (261)
..+..+++|+.|++.+. +++.+... ...+++|+.|.++++ +++.+|........+|+.+.
T Consensus 94 ----------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 94 ----------GVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp ----------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred ----------hHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEE
Confidence 13456899999999886 47777654 346899999999997 57777765444456666654
No 110
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=9.7e-07 Score=70.51 Aligned_cols=87 Identities=17% Similarity=0.317 Sum_probs=46.6
Q ss_pred CCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC--cccc----CCCCcEEEEeccccccccc
Q 024866 86 HLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT--FLVF----APNLKSLRLFDCGAMEEII 159 (261)
Q Consensus 86 ~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~--~l~~----lp~L~~L~i~~C~~L~~i~ 159 (261)
+|+.|++++|. +... .+.....+++|+.|++.+|..+++-. .+.. .++|++|+|++|.++++..
T Consensus 62 ~L~~LDLs~~~-Itd~---------GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSI---------GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CEEEEEEESCC-CCGG---------GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred eEeEEeCcCCC-ccHH---------HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 56777777765 3211 01112356677777777776666531 1222 2357777777776655421
Q ss_pred ccccccccCcccCCcccCCcccEEeccCCccccc
Q 024866 160 SVGKIAETPEMMGHISPFENLQSLDLDDLPHLKS 193 (261)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~ 193 (261)
-. .+..+++|++|++++|++++.
T Consensus 132 l~-----------~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 II-----------ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HH-----------HGGGCTTCCEEEEESCTTCCC
T ss_pred HH-----------HHhcCCCCCEEECCCCCCCCc
Confidence 10 123456666666666666654
No 111
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.14 E-value=5.6e-07 Score=84.20 Aligned_cols=43 Identities=9% Similarity=0.223 Sum_probs=23.4
Q ss_pred CCcccEEeccCCcccccccCC--CccCCccceeeecc---CccCCCCCC
Q 024866 177 FENLQSLDLDDLPHLKSIFWK--PLPFTHLKKMAVLM---CDQLRKPPL 220 (261)
Q Consensus 177 ~p~L~~L~L~~~~~L~~i~~~--~~~~p~L~~L~i~~---C~~L~~lp~ 220 (261)
+++|++|.+ .+.++..-... ...+++|+.|.+.+ |.+++..|.
T Consensus 377 ~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 377 CQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp CTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred CccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence 556666665 33333321110 12367888888874 567776653
No 112
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.10 E-value=4.4e-06 Score=64.00 Aligned_cols=113 Identities=18% Similarity=0.138 Sum_probs=82.3
Q ss_pred cccCCCCeEEEeccCCcc--eEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEeccccccccc
Q 024866 82 ADLNHLNELYIFKGIELE--ELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEII 159 (261)
Q Consensus 82 ~~l~~L~~L~i~~c~~Le--~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~ 159 (261)
...++|+.|++++|. +. .+ ++....+++|+.|++.+| +++.+..+..+++|++|+++++. +...+
T Consensus 14 ~~~~~l~~L~l~~n~-l~~~~~----------~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n~-i~~~~ 80 (149)
T 2je0_A 14 RTPSDVKELVLDNSR-SNEGKL----------EGLTDEFEELEFLSTINV-GLTSIANLPKLNKLKKLELSDNR-VSGGL 80 (149)
T ss_dssp CCGGGCSEEECTTCB-CBTTBC----------CSCCTTCTTCCEEECTTS-CCCCCTTCCCCTTCCEEECCSSC-CCSCT
T ss_pred CCCccCeEEEccCCc-CChhHH----------HHHHhhcCCCcEEECcCC-CCCCchhhhcCCCCCEEECCCCc-ccchH
Confidence 345789999999885 32 21 122367899999999998 68877667789999999999974 33311
Q ss_pred ccccccccCcccCCcccCCcccEEeccCCccccccc--CCCccCCccceeeeccCccCCCCCC
Q 024866 160 SVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIF--WKPLPFTHLKKMAVLMCDQLRKPPL 220 (261)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~--~~~~~~p~L~~L~i~~C~~L~~lp~ 220 (261)
. .....+++|+.|++.++. ++.+. .....+++|++|.+++| .+..+|.
T Consensus 81 ~-----------~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~ 130 (149)
T 2je0_A 81 E-----------VLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLND 130 (149)
T ss_dssp H-----------HHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTT
T ss_pred H-----------HHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHH
Confidence 1 123458999999999876 66653 34567899999999998 5666664
No 113
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.10 E-value=7.2e-07 Score=79.40 Aligned_cols=36 Identities=14% Similarity=-0.071 Sum_probs=23.5
Q ss_pred CCcccEEeccCCccccc-----ccCCC-ccCCccceeeeccCc
Q 024866 177 FENLQSLDLDDLPHLKS-----IFWKP-LPFTHLKKMAVLMCD 213 (261)
Q Consensus 177 ~p~L~~L~L~~~~~L~~-----i~~~~-~~~p~L~~L~i~~C~ 213 (261)
+++|++|++.++. +.. ++... ..+++|+.|.+++|+
T Consensus 273 ~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 273 NIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp SCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 6778888887764 443 43222 236888888887774
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.06 E-value=1.4e-05 Score=75.25 Aligned_cols=108 Identities=19% Similarity=0.187 Sum_probs=57.8
Q ss_pred ceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccc
Q 024866 60 CIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLV 139 (261)
Q Consensus 60 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~ 139 (261)
.|+.|+++++ ++..+ +.++.+++|+.|+++++. +..| +...+.+++|+.|+++++ +++.++.++
T Consensus 442 ~L~~L~Ls~n-~l~~l---p~~~~l~~L~~L~Ls~N~-l~~l----------p~~~~~l~~L~~L~Ls~N-~l~~lp~l~ 505 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVL---CHLEQLLLVTHLDLSHNR-LRAL----------PPALAALRCLEVLQASDN-ALENVDGVA 505 (567)
T ss_dssp TCSEEECTTS-CCSSC---CCGGGGTTCCEEECCSSC-CCCC----------CGGGGGCTTCCEEECCSS-CCCCCGGGT
T ss_pred CceEEEecCC-CCCCC---cCccccccCcEeecCccc-cccc----------chhhhcCCCCCEEECCCC-CCCCCcccC
Confidence 3556666664 44444 236666666666666653 2222 011245666677766665 455555555
Q ss_pred cCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccccccc
Q 024866 140 FAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIF 195 (261)
Q Consensus 140 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~ 195 (261)
.+++|++|+++++ .+..+.. +..+..+++|+.|++.+.+ ++.++
T Consensus 506 ~l~~L~~L~Ls~N-~l~~~~~----------p~~l~~l~~L~~L~L~~N~-l~~~~ 549 (567)
T 1dce_A 506 NLPRLQELLLCNN-RLQQSAA----------IQPLVSCPRLVLLNLQGNS-LCQEE 549 (567)
T ss_dssp TCSSCCEEECCSS-CCCSSST----------TGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred CCCCCcEEECCCC-CCCCCCC----------cHHHhcCCCCCEEEecCCc-CCCCc
Confidence 6666777766664 2332210 1234456666666666644 44443
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.05 E-value=6.9e-06 Score=64.90 Aligned_cols=127 Identities=11% Similarity=0.041 Sum_probs=86.2
Q ss_pred cccccCCCCeEEEeccCCcceEecccccccccCCCCc-CCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccc
Q 024866 80 AFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPF-VFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEI 158 (261)
Q Consensus 80 ~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~-~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i 158 (261)
.+....+|+.|+++++. +..+ +... ..++|+.|+++++ +++++..+..+++|++|+++++. +..+
T Consensus 14 ~~~~~~~L~~L~l~~n~-l~~i-----------~~~~~~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~~ 79 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYK-IPVI-----------ENLGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNNR-ICRI 79 (176)
T ss_dssp EEECTTSCEEEECTTSC-CCSC-----------CCGGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSSC-CCEE
T ss_pred hcCCcCCceEEEeeCCC-Cchh-----------HHhhhcCCCCCEEECCCC-CCCcccccccCCCCCEEECCCCc-cccc
Confidence 34567788888888874 4332 2212 3459999999998 67777667789999999999974 4443
Q ss_pred cccccccccCcccCCcccCCcccEEeccCCcccccccC--CCccCCccceeeeccCccCCCCCCC---CccccCCceEEE
Q 024866 159 ISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW--KPLPFTHLKKMAVLMCDQLRKPPLD---SNSAKERKFVIR 233 (261)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~--~~~~~p~L~~L~i~~C~~L~~lp~~---~~~~~~~l~~~~ 233 (261)
.. ..+..+++|+.|++.+.. +..++. ....+++|+.|.+++++- ..+|.. .......|+.+.
T Consensus 80 ~~-----------~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 80 GE-----------GLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp CS-----------CHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEET
T ss_pred Cc-----------chhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeC
Confidence 21 012568999999999874 666654 345689999999999863 455543 122235566543
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.04 E-value=8.5e-06 Score=76.72 Aligned_cols=154 Identities=16% Similarity=0.099 Sum_probs=78.2
Q ss_pred cCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccC---------CcceEec
Q 024866 33 KYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGI---------ELEELKI 103 (261)
Q Consensus 33 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~---------~Le~l~~ 103 (261)
++|+.|++....... +. ....+|+.|+++++ .+..++ . +.. +|+.|+++++. +|+.+.+
T Consensus 80 ~~L~~L~Ls~N~l~~---ip---~~l~~L~~L~Ls~N-~l~~ip--~-l~~--~L~~L~Ls~N~l~~lp~~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALIS---LP---ELPASLEYLDACDN-RLSTLP--E-LPA--SLKHLDVDNNQLTMLPELPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCSC---CC---CCCTTCCEEECCSS-CCSCCC--C-CCT--TCCEEECCSSCCSCCCCCCTTCCEEEC
T ss_pred CCCCEEECcCCCCcc---cc---cccCCCCEEEccCC-CCCCcc--h-hhc--CCCEEECCCCcCCCCCCcCccccEEeC
Confidence 567777766433221 11 23456777777765 344442 1 332 67777766543 1222222
Q ss_pred ccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEE
Q 024866 104 DYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSL 183 (261)
Q Consensus 104 ~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L 183 (261)
..... ..+|. .+++|+.|+++++ +++.++.+ .++|++|+++++ .++.+.... . .-....+.|+.|
T Consensus 148 s~N~l-~~lp~--~l~~L~~L~Ls~N-~L~~lp~l--~~~L~~L~Ls~N-~L~~lp~~~--~------~L~~~~~~L~~L 212 (571)
T 3cvr_A 148 DNNQL-TMLPE--LPTSLEVLSVRNN-QLTFLPEL--PESLEALDVSTN-LLESLPAVP--V------RNHHSEETEIFF 212 (571)
T ss_dssp CSSCC-SCCCC--CCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSS-CCSSCCCCC----------------CCEEE
T ss_pred CCCcc-CcCCC--cCCCcCEEECCCC-CCCCcchh--hCCCCEEECcCC-CCCchhhHH--H------hhhcccccceEE
Confidence 22111 11222 3456666666665 34444332 156666666664 333222100 0 000111223888
Q ss_pred eccCCcccccccCCCccCCccceeeeccCcc
Q 024866 184 DLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQ 214 (261)
Q Consensus 184 ~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~ 214 (261)
++.+. +++.++.....+++|+.|.+++++-
T Consensus 213 ~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 213 RCREN-RITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp ECCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred ecCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence 88886 4777776666789999999988854
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.97 E-value=0.00015 Score=59.41 Aligned_cols=123 Identities=12% Similarity=0.128 Sum_probs=84.6
Q ss_pred CCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCC--CccccCCCCcEEEEecccccccccccc
Q 024866 85 NHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDV--TFLVFAPNLKSLRLFDCGAMEEIISVG 162 (261)
Q Consensus 85 ~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l--~~l~~lp~L~~L~i~~C~~L~~i~~~~ 162 (261)
++|+.|++++.. +..+.. .....+++|+.|+++++ ++..+ ..+..+++|++|+++++ .++.+..
T Consensus 32 ~~l~~L~l~~n~-i~~i~~---------~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~-- 97 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIPP---------GAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN-KITELPK-- 97 (220)
T ss_dssp TTCCEEECCSSC-CCEECT---------TSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS-CCCCCCT--
T ss_pred cCCCEEECCCCc-CCCcCH---------hHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC-cCCccCH--
Confidence 689999988764 444321 12356889999999987 56665 23567899999999986 4444332
Q ss_pred cccccCcccCCcccCCcccEEeccCCcccccccCC-CccCCccceeeeccCccCCCCCCCCccccCCceEE
Q 024866 163 KIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWK-PLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVI 232 (261)
Q Consensus 163 ~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 232 (261)
..+..+++|+.|++.+.. ++.+... ...+++|+.|.++++. ++.++.........|+.+
T Consensus 98 ---------~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 98 ---------SLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp ---------TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred ---------hHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEE
Confidence 134568999999999864 7776543 4468999999999874 666665544334455543
No 118
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.95 E-value=8.3e-05 Score=58.50 Aligned_cols=84 Identities=18% Similarity=0.189 Sum_probs=47.6
Q ss_pred cCCCCCcEEEEecCCCCCCCCc--cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccccc
Q 024866 116 FVFRSLHRVIIGECHKLKDVTF--LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKS 193 (261)
Q Consensus 116 ~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~ 193 (261)
..+++|+.|++.++ +++.+.. +..+++|++|+++++ .+..+.. ..+..+++|+.|++.+. +++.
T Consensus 49 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~-----------~~~~~l~~L~~L~l~~N-~l~~ 114 (177)
T 2o6r_A 49 DKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPN-----------GVFDKLTQLKELALDTN-QLKS 114 (177)
T ss_dssp TTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-----------TTTTTCTTCCEEECCSS-CCSC
T ss_pred cCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCH-----------HHhhCCcccCEEECcCC-cceE
Confidence 44667777777665 4555432 345677777777664 2332221 12344667777777665 4565
Q ss_pred ccCCC-ccCCccceeeeccCc
Q 024866 194 IFWKP-LPFTHLKKMAVLMCD 213 (261)
Q Consensus 194 i~~~~-~~~p~L~~L~i~~C~ 213 (261)
++... ..+++|++|++.+++
T Consensus 115 ~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 115 VPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCTTTTTTCTTCCEEECCSSC
T ss_pred eCHHHhcCCcccCEEEecCCC
Confidence 55433 346677777666653
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.92 E-value=0.0002 Score=58.62 Aligned_cols=143 Identities=10% Similarity=0.076 Sum_probs=92.6
Q ss_pred eEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC--ccc
Q 024866 62 RSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT--FLV 139 (261)
Q Consensus 62 ~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~--~l~ 139 (261)
+++++++. +++.++. .+ .+.++.|++++.. +..+... .....+++|+.|+++++ +++.+. .+.
T Consensus 14 ~~l~~s~n-~l~~iP~--~~--~~~~~~L~L~~N~-l~~~~~~--------~~~~~l~~L~~L~L~~N-~i~~i~~~~~~ 78 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPE--HI--PQYTAELRLNNNE-FTVLEAT--------GIFKKLPQLRKINFSNN-KITDIEEGAFE 78 (220)
T ss_dssp TEEECCSS-CCSSCCS--CC--CTTCSEEECCSSC-CCEECCC--------CCGGGCTTCCEEECCSS-CCCEECTTTTT
T ss_pred CEeEeCCC-CcccCcc--CC--CCCCCEEEcCCCc-CCccCch--------hhhccCCCCCEEECCCC-cCCEECHHHhC
Confidence 35666653 4455542 22 3467888888764 4433110 01257899999999987 577664 357
Q ss_pred cCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccC-CCccCCccceeeeccCccCCCC
Q 024866 140 FAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW-KPLPFTHLKKMAVLMCDQLRKP 218 (261)
Q Consensus 140 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~l 218 (261)
.+++|++|+++++. ++.+.. ..+..+++|++|++.+.. ++.+.. ....+++|+.|.++++ +++.+
T Consensus 79 ~l~~L~~L~Ls~N~-l~~~~~-----------~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~ 144 (220)
T 2v70_A 79 GASGVNEILLTSNR-LENVQH-----------KMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDN-QITTV 144 (220)
T ss_dssp TCTTCCEEECCSSC-CCCCCG-----------GGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTS-CCCCB
T ss_pred CCCCCCEEECCCCc-cCccCH-----------hHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCC-cCCEE
Confidence 79999999999863 443332 134568999999999865 666643 3456899999999987 46666
Q ss_pred CCCCccccCCceEEE
Q 024866 219 PLDSNSAKERKFVIR 233 (261)
Q Consensus 219 p~~~~~~~~~l~~~~ 233 (261)
+........+|+.+.
T Consensus 145 ~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 145 APGAFDTLHSLSTLN 159 (220)
T ss_dssp CTTTTTTCTTCCEEE
T ss_pred CHHHhcCCCCCCEEE
Confidence 444443345555543
No 120
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.90 E-value=7e-06 Score=76.86 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=66.6
Q ss_pred cCCCCCcEEEEecCCCCCCC--CccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccccc
Q 024866 116 FVFRSLHRVIIGECHKLKDV--TFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKS 193 (261)
Q Consensus 116 ~~~~~L~~L~l~~C~~l~~l--~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~ 193 (261)
..+++|+.|++.++.....+ ..+..+++|++|++++| .++.++. ..+..+++|+.|+|++. +++.
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~-----------~~f~~l~~L~~L~Ls~N-~l~~ 532 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP-----------TAFNSLSSLQVLNMSHN-NFFS 532 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-----------TTTTTCTTCCEEECTTS-CCCB
T ss_pred ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcCh-----------HHHcCCCCCCEEECCCC-cCCC
Confidence 45667777777766433332 12456778888888876 4444432 24567899999999986 4777
Q ss_pred ccCCC-ccCCccceeeeccCccCCCCCCCCcc-ccCCceEEE
Q 024866 194 IFWKP-LPFTHLKKMAVLMCDQLRKPPLDSNS-AKERKFVIR 233 (261)
Q Consensus 194 i~~~~-~~~p~L~~L~i~~C~~L~~lp~~~~~-~~~~l~~~~ 233 (261)
+.... ..+++|+.|+++++. ++.++..... .+.+|+.+.
T Consensus 533 l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~ 573 (635)
T 4g8a_A 533 LDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLN 573 (635)
T ss_dssp CCCGGGTTCTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEE
T ss_pred CChhHHhCCCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEE
Confidence 76543 457999999999874 5555543332 234566643
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.88 E-value=1.9e-05 Score=76.47 Aligned_cols=37 Identities=14% Similarity=0.089 Sum_probs=16.5
Q ss_pred ccCCcccEEeccCCcccccccCCCccCCccceeeeccC
Q 024866 175 SPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMC 212 (261)
Q Consensus 175 ~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C 212 (261)
..+++|+.|+|.++ .++.++.....+++|+.|.++++
T Consensus 290 ~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 290 GSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp GGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTS
T ss_pred cCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCC
Confidence 33444555554443 24444433334444444444444
No 122
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.86 E-value=1.6e-05 Score=70.05 Aligned_cols=87 Identities=13% Similarity=-0.054 Sum_probs=46.1
Q ss_pred eeeccccccccCCCcchh------hhhhccc-CCceEEEEEcchHH--HHHHhhCccc-ccceeEEEEcCCCCCCcccc-
Q 024866 9 FHEASEESVLFGGGEVLV------QELLGLK-YLEVLELTLGSYQA--LQILLSSNKL-KSCIRSLQLRLVRDTPSIID- 77 (261)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l------~eL~~L~-~L~~L~i~~~~~~~--l~~l~~~~~l-~~~L~~L~L~~c~~l~~l~~- 77 (261)
..+..+..|+++...... +.+..++ +|+.|++....... ...+...... ..+|+.|+++++. +.....
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~ 98 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSD 98 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHH
Confidence 334466677766643322 5666777 78888887543222 2222221111 1468888888774 332221
Q ss_pred --ccccccc-CCCCeEEEeccC
Q 024866 78 --ATAFADL-NHLNELYIFKGI 96 (261)
Q Consensus 78 --~~~l~~l-~~L~~L~i~~c~ 96 (261)
...+..+ ++|+.|++++|.
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHHHhCCCCccEEECcCCc
Confidence 0123334 678888887653
No 123
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.83 E-value=3.8e-05 Score=68.22 Aligned_cols=87 Identities=15% Similarity=0.168 Sum_probs=46.0
Q ss_pred CCCCCcEEEEecC-------CCCCCCCc-c--ccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEecc
Q 024866 117 VFRSLHRVIIGEC-------HKLKDVTF-L--VFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLD 186 (261)
Q Consensus 117 ~~~~L~~L~l~~C-------~~l~~l~~-l--~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~ 186 (261)
.+|+|+.|+++.+ ..+..+.. + ..+|+|++|.+++|..-...... + .....+|+|++|+|+
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~--------l-a~a~~~~~L~~LdLs 287 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM--------F-LESDILPQLETMDIS 287 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH--------H-HHCSSGGGCSEEECC
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH--------H-HhCccCCCCCEEECC
Confidence 4677777777532 11222211 1 24778888888776432111000 0 011247788888885
Q ss_pred CCccccc-----ccCCCccCCccceeeeccCc
Q 024866 187 DLPHLKS-----IFWKPLPFTHLKKMAVLMCD 213 (261)
Q Consensus 187 ~~~~L~~-----i~~~~~~~p~L~~L~i~~C~ 213 (261)
. ..+.. +..+...+++|+.|++++|.
T Consensus 288 ~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 288 A-GVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp S-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred C-CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 4 33544 22222456888888887773
No 124
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.80 E-value=3.2e-06 Score=76.52 Aligned_cols=86 Identities=16% Similarity=0.105 Sum_probs=53.9
Q ss_pred CCCCcEEEEecCCCCCCCC------ccccCCCCcEEEEecccccccccccccccccCcccCCc-ccCCcccEEeccCCcc
Q 024866 118 FRSLHRVIIGECHKLKDVT------FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHI-SPFENLQSLDLDDLPH 190 (261)
Q Consensus 118 ~~~L~~L~l~~C~~l~~l~------~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~-~~~p~L~~L~L~~~~~ 190 (261)
.++|+.|++++|. +.+.. .+..+++|++|+++++ .+.+.....- ...+ ...++|++|++.++.
T Consensus 312 ~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l-------~~~l~~~~~~L~~L~L~~n~- 381 (461)
T 1z7x_W 312 GCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVREL-------CQGLGQPGSVLRVLWLADCD- 381 (461)
T ss_dssp TCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHH-------HHHHTSTTCCCCEEECTTSC-
T ss_pred CccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHH-------HHHHcCCCCceEEEECCCCC-
Confidence 3588888888884 54431 2345788999998887 3433211000 0011 126789999999984
Q ss_pred cc-----cccCCCccCCccceeeeccCc
Q 024866 191 LK-----SIFWKPLPFTHLKKMAVLMCD 213 (261)
Q Consensus 191 L~-----~i~~~~~~~p~L~~L~i~~C~ 213 (261)
+. .++.....+++|++|++++|+
T Consensus 382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 382 VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 55 343333457999999999984
No 125
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.78 E-value=0.00029 Score=66.24 Aligned_cols=161 Identities=16% Similarity=0.096 Sum_probs=81.1
Q ss_pred CCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccC---------CcceEecc
Q 024866 34 YLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGI---------ELEELKID 104 (261)
Q Consensus 34 ~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~---------~Le~l~~~ 104 (261)
+|+.|++....... +... ..++|+.|+++++ .+..++ ..+++|+.|+++++. +|+.+.+.
T Consensus 60 ~L~~L~Ls~n~L~~---lp~~--l~~~L~~L~Ls~N-~l~~ip-----~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS---LPDN--LPPQITVLEITQN-ALISLP-----ELPASLEYLDACDNRLSTLPELPASLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC---CCSC--CCTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred CccEEEeCCCCCCc---cCHh--HcCCCCEEECcCC-CCcccc-----cccCCCCEEEccCCCCCCcchhhcCCCEEECC
Confidence 67777776433221 2221 2356888888875 344442 446788888887652 22223222
Q ss_pred cccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEe
Q 024866 105 YTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLD 184 (261)
Q Consensus 105 ~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~ 184 (261)
.... ..+|. .+++|+.|+++++ +++.++. .+++|++|+++++. +.. ++. +. ++|+.|+
T Consensus 129 ~N~l-~~lp~--~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~-L~~------------lp~-l~--~~L~~L~ 186 (571)
T 3cvr_A 129 NNQL-TMLPE--LPALLEYINADNN-QLTMLPE--LPTSLEVLSVRNNQ-LTF------------LPE-LP--ESLEALD 186 (571)
T ss_dssp SSCC-SCCCC--CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CSC------------CCC-CC--TTCCEEE
T ss_pred CCcC-CCCCC--cCccccEEeCCCC-ccCcCCC--cCCCcCEEECCCCC-CCC------------cch-hh--CCCCEEE
Confidence 2211 11222 3445555555444 2333322 34455555555442 221 122 22 7788888
Q ss_pred ccCCcccccccCCCccCCcc-------ceeeeccCccCCCCCCCCccccCCceEEE
Q 024866 185 LDDLPHLKSIFWKPLPFTHL-------KKMAVLMCDQLRKPPLDSNSAKERKFVIR 233 (261)
Q Consensus 185 L~~~~~L~~i~~~~~~~p~L-------~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 233 (261)
+.+. +++.++. . ..+| +.|.++++ +++.+|..... ..+|+.+.
T Consensus 187 Ls~N-~L~~lp~-~--~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~-l~~L~~L~ 236 (571)
T 3cvr_A 187 VSTN-LLESLPA-V--PVRNHHSEETEIFFRCREN-RITHIPENILS-LDPTCTII 236 (571)
T ss_dssp CCSS-CCSSCCC-C--C--------CCEEEECCSS-CCCCCCGGGGG-SCTTEEEE
T ss_pred CcCC-CCCchhh-H--HHhhhcccccceEEecCCC-cceecCHHHhc-CCCCCEEE
Confidence 8776 4666654 1 1266 88888876 56677754433 35555544
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.77 E-value=0.0001 Score=63.98 Aligned_cols=52 Identities=12% Similarity=0.082 Sum_probs=21.8
Q ss_pred CCcccEEeccCCcccccccCCCc-cCCccc-eeeeccCccCCCCCCCCccccCCceEE
Q 024866 177 FENLQSLDLDDLPHLKSIFWKPL-PFTHLK-KMAVLMCDQLRKPPLDSNSAKERKFVI 232 (261)
Q Consensus 177 ~p~L~~L~L~~~~~L~~i~~~~~-~~p~L~-~L~i~~C~~L~~lp~~~~~~~~~l~~~ 232 (261)
+++|++|.+.+ +++.|....+ .+++|+ .+.+.+ +++.++.+....+.+|+.+
T Consensus 249 ~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 249 KKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEE
T ss_pred CCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEE
Confidence 44455554443 2444433222 234444 444444 4444444444434444443
No 127
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.76 E-value=2.8e-06 Score=76.95 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=19.0
Q ss_pred CCCCcEEEEecCCCCCCC------CccccCCCCcEEEEecc
Q 024866 118 FRSLHRVIIGECHKLKDV------TFLVFAPNLKSLRLFDC 152 (261)
Q Consensus 118 ~~~L~~L~l~~C~~l~~l------~~l~~lp~L~~L~i~~C 152 (261)
.++|+.|++.+| ++.+. ..+..+++|++|++++|
T Consensus 198 ~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 198 PCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp CCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred CCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 346677777666 34432 11234566666666665
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.69 E-value=0.00045 Score=54.19 Aligned_cols=103 Identities=20% Similarity=0.148 Sum_probs=75.5
Q ss_pred cCCCCCcEEEEecCCCCCCCCc--cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccccc
Q 024866 116 FVFRSLHRVIIGECHKLKDVTF--LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKS 193 (261)
Q Consensus 116 ~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~ 193 (261)
..+++|+.|++.++ +++.+.. +..+++|++|+++++ .+..+.. ..+..+++|+.|++.+. +++.
T Consensus 25 ~~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-----------~~~~~l~~L~~L~l~~N-~l~~ 90 (177)
T 2o6r_A 25 GIPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPD-----------GVFDKLTKLTILYLHEN-KLQS 90 (177)
T ss_dssp TCCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCT-----------TTTTTCTTCCEEECCSS-CCCC
T ss_pred CCCCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC-cceEeCh-----------hHccCCCccCEEECCCC-Cccc
Confidence 45679999999987 4666642 467899999999986 4444332 13456899999999986 4777
Q ss_pred ccCCC-ccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866 194 IFWKP-LPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR 233 (261)
Q Consensus 194 i~~~~-~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 233 (261)
+.... ..+++|+.|.++++ +++.+|.........|+.+.
T Consensus 91 ~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 91 LPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred cCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEE
Confidence 76543 46899999999998 77888876544456677655
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.69 E-value=0.0004 Score=61.12 Aligned_cols=129 Identities=17% Similarity=0.198 Sum_probs=86.3
Q ss_pred eEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCc-CCCCCcEEEEecCCCCCCCC--cc
Q 024866 62 RSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPF-VFRSLHRVIIGECHKLKDVT--FL 138 (261)
Q Consensus 62 ~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~-~~~~L~~L~l~~C~~l~~l~--~l 138 (261)
+++++++ .+++.++. .+ .++++.|++++.. +..+..+. .. .+++|+.|+++++ ++..+. .+
T Consensus 21 ~~l~c~~-~~l~~iP~--~~--~~~l~~L~Ls~N~-l~~l~~~~---------~~~~l~~L~~L~L~~N-~i~~i~~~~~ 84 (361)
T 2xot_A 21 NILSCSK-QQLPNVPQ--SL--PSYTALLDLSHNN-LSRLRAEW---------TPTRLTNLHSLLLSHN-HLNFISSEAF 84 (361)
T ss_dssp TEEECCS-SCCSSCCS--SC--CTTCSEEECCSSC-CCEECTTS---------SSSCCTTCCEEECCSS-CCCEECTTTT
T ss_pred CEEEeCC-CCcCccCc--cC--CCCCCEEECCCCC-CCccChhh---------hhhcccccCEEECCCC-cCCccChhhc
Confidence 3455544 34555542 22 3468899998764 55442111 12 6899999999987 677664 35
Q ss_pred ccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccC-CCccCCccceeeeccCccCCC
Q 024866 139 VFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW-KPLPFTHLKKMAVLMCDQLRK 217 (261)
Q Consensus 139 ~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~ 217 (261)
..+++|++|+++++. ++.+.. ..+..+++|+.|++.+.. ++.+.. ....+++|+.|.++++ +++.
T Consensus 85 ~~l~~L~~L~Ls~N~-l~~~~~-----------~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~ 150 (361)
T 2xot_A 85 VPVPNLRYLDLSSNH-LHTLDE-----------FLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN-QISR 150 (361)
T ss_dssp TTCTTCCEEECCSSC-CCEECT-----------TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCS
T ss_pred cCCCCCCEEECCCCc-CCcCCH-----------HHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCC-cCCe
Confidence 679999999999963 554432 134568999999999865 666643 3446899999999886 4555
Q ss_pred CCC
Q 024866 218 PPL 220 (261)
Q Consensus 218 lp~ 220 (261)
+|.
T Consensus 151 l~~ 153 (361)
T 2xot_A 151 FPV 153 (361)
T ss_dssp CCG
T ss_pred eCH
Confidence 554
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.68 E-value=0.00025 Score=61.57 Aligned_cols=57 Identities=14% Similarity=0.109 Sum_probs=38.2
Q ss_pred cccCCccc-EEeccCCcccccccCCCc-cCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866 174 ISPFENLQ-SLDLDDLPHLKSIFWKPL-PFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR 233 (261)
Q Consensus 174 ~~~~p~L~-~L~L~~~~~L~~i~~~~~-~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 233 (261)
+..+++|+ .+.+.+ +++.|....+ .+++|+.|.+.+ .+++.++.+....+.+|+.++
T Consensus 269 F~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 269 FSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred hhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 44566787 888877 6777765433 467888887533 357777777776667777664
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.65 E-value=0.00018 Score=57.62 Aligned_cols=105 Identities=22% Similarity=0.290 Sum_probs=54.4
Q ss_pred ceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc--
Q 024866 60 CIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF-- 137 (261)
Q Consensus 60 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~-- 137 (261)
.++.|.+++. .+..++....++.+++|+.|+++++. +..+.. .....+++|+.|++++. +++.+..
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~---------~~~~~l~~L~~L~Ls~N-~l~~~~~~~ 97 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEP---------NAFEGASHIQELQLGEN-KIKEISNKM 97 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCT---------TTTTTCTTCCEEECCSC-CCCEECSSS
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCH---------hHcCCcccCCEEECCCC-cCCccCHHH
Confidence 5666666664 34444321235666677777766653 222110 11245666777777665 4554432
Q ss_pred cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCC
Q 024866 138 LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDL 188 (261)
Q Consensus 138 l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~ 188 (261)
+..+++|++|+++++ .+..+.. ..+..+++|+.|++.+-
T Consensus 98 ~~~l~~L~~L~L~~N-~l~~~~~-----------~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDN-QISCVMP-----------GSFEHLNSLTSLNLASN 136 (192)
T ss_dssp STTCTTCCEEECCSS-CCCEECT-----------TSSTTCTTCCEEECTTC
T ss_pred hcCCCCCCEEECCCC-cCCeeCH-----------HHhhcCCCCCEEEeCCC
Confidence 345667777777664 2332221 13344666666666554
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.60 E-value=1.2e-05 Score=71.02 Aligned_cols=87 Identities=15% Similarity=0.064 Sum_probs=49.0
Q ss_pred Eeee-ccccccccCCCcch--hhhhhcc-----cCCceEEEEEcchHH--HHHHhhCcccc-cceeEEEEcCCCCCCccc
Q 024866 8 NFHE-ASEESVLFGGGEVL--VQELLGL-----KYLEVLELTLGSYQA--LQILLSSNKLK-SCIRSLQLRLVRDTPSII 76 (261)
Q Consensus 8 ~~~~-~~~~~~~~~~~~~~--l~eL~~L-----~~L~~L~i~~~~~~~--l~~l~~~~~l~-~~L~~L~L~~c~~l~~l~ 76 (261)
.-+| ..+..++++..... ...+..+ ++|+.|++....... ...+....... .+|+.|+++++. +...+
T Consensus 47 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~ 125 (362)
T 3goz_A 47 ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKS 125 (362)
T ss_dssp HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSC
T ss_pred HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHH
Confidence 3445 67777777764332 4445444 888888888543221 22222221111 478999999875 34332
Q ss_pred cccc----ccc-cCCCCeEEEeccC
Q 024866 77 DATA----FAD-LNHLNELYIFKGI 96 (261)
Q Consensus 77 ~~~~----l~~-l~~L~~L~i~~c~ 96 (261)
. .. +.. ..+|++|++++|.
T Consensus 126 ~-~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 126 S-SEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp H-HHHHHHHTTSCTTCCEEECTTSC
T ss_pred H-HHHHHHHHhCCCceeEEEccCCc
Confidence 2 22 233 2588888888764
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.59 E-value=3.8e-06 Score=67.76 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=17.9
Q ss_pred CCCCcEEEEecCCCCCCCCccccCCCCcEEEEecc
Q 024866 118 FRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDC 152 (261)
Q Consensus 118 ~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C 152 (261)
+++|+.|+++++ ++..++.+..+++|++|+++++
T Consensus 92 ~~~L~~L~L~~N-~l~~l~~~~~l~~L~~L~l~~N 125 (198)
T 1ds9_A 92 ADTLEELWISYN-QIASLSGIEKLVNLRVLYMSNN 125 (198)
T ss_dssp HHHCSEEEEEEE-ECCCHHHHHHHHHSSEEEESEE
T ss_pred CCcCCEEECcCC-cCCcCCccccCCCCCEEECCCC
Confidence 355555655555 4444433444555555555554
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.59 E-value=0.00035 Score=56.06 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=39.2
Q ss_pred ceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc--
Q 024866 60 CIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF-- 137 (261)
Q Consensus 60 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~-- 137 (261)
.++.|++++. .+..++ ..+..+++|+.|+++++. +..+.. .....+++|+.|++++. +++.+..
T Consensus 32 ~l~~L~L~~n-~i~~ip--~~~~~l~~L~~L~Ls~N~-i~~i~~---------~~f~~l~~L~~L~Ls~N-~l~~i~~~~ 97 (193)
T 2wfh_A 32 DVTELYLDGN-QFTLVP--KELSNYKHLTLIDLSNNR-ISTLSN---------QSFSNMTQLLTLILSYN-RLRCIPPRT 97 (193)
T ss_dssp TCCEEECCSS-CCCSCC--GGGGGCTTCCEEECCSSC-CCCCCT---------TTTTTCTTCCEEECCSS-CCCBCCTTT
T ss_pred CCCEEECCCC-cCchhH--HHhhcccCCCEEECCCCc-CCEeCH---------hHccCCCCCCEEECCCC-ccCEeCHHH
Confidence 4566666653 333332 345566666666665543 222110 01234556666666655 3544432
Q ss_pred cccCCCCcEEEEecc
Q 024866 138 LVFAPNLKSLRLFDC 152 (261)
Q Consensus 138 l~~lp~L~~L~i~~C 152 (261)
+..+++|++|+++++
T Consensus 98 f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGN 112 (193)
T ss_dssp TTTCTTCCEEECCSS
T ss_pred hCCCCCCCEEECCCC
Confidence 344566666666653
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.45 E-value=0.00077 Score=53.97 Aligned_cols=120 Identities=12% Similarity=0.106 Sum_probs=77.0
Q ss_pred EEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc--ccc
Q 024866 63 SLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF--LVF 140 (261)
Q Consensus 63 ~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~--l~~ 140 (261)
.+.+++ .+++.++. .+ .++|+.|++++.. +..+. .....+++|+.|+++++ +++.+.. +..
T Consensus 14 ~l~~~~-~~l~~ip~--~~--~~~l~~L~L~~n~-i~~ip----------~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~ 76 (193)
T 2wfh_A 14 VVRCSN-KGLKVLPK--GI--PRDVTELYLDGNQ-FTLVP----------KELSNYKHLTLIDLSNN-RISTLSNQSFSN 76 (193)
T ss_dssp EEECTT-SCCSSCCS--CC--CTTCCEEECCSSC-CCSCC----------GGGGGCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred EEEcCC-CCCCcCCC--CC--CCCCCEEECCCCc-CchhH----------HHhhcccCCCEEECCCC-cCCEeCHhHccC
Confidence 445444 24455542 22 3578888888754 33221 12356889999999887 5776642 567
Q ss_pred CCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCC-CccCCccceeeeccC
Q 024866 141 APNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWK-PLPFTHLKKMAVLMC 212 (261)
Q Consensus 141 lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C 212 (261)
+++|++|+++++. +..+.. ..+..+++|+.|++.+. +++.+... ...+++|+.|.+.+.
T Consensus 77 l~~L~~L~Ls~N~-l~~i~~-----------~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 77 MTQLLTLILSYNR-LRCIPP-----------RTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CTTCCEEECCSSC-CCBCCT-----------TTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCEEECCCCc-cCEeCH-----------HHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCC
Confidence 8999999998863 444332 13456889999999885 47777654 335788888877654
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.39 E-value=2.6e-06 Score=68.71 Aligned_cols=125 Identities=13% Similarity=0.107 Sum_probs=82.0
Q ss_pred ceeEEEEcCC-CCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc-
Q 024866 60 CIRSLQLRLV-RDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF- 137 (261)
Q Consensus 60 ~L~~L~L~~c-~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~- 137 (261)
.++...+.+. +.++.++ ..++.+++|+.|+++++. +..+ |....+++|+.|++.++ +++.++.
T Consensus 24 ~l~~~~l~~~~~~l~~l~--~~~~~l~~L~~L~ls~n~-l~~l-----------~~~~~l~~L~~L~l~~n-~l~~l~~~ 88 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMD--ATLSTLKACKHLALSTNN-IEKI-----------SSLSGMENLRILSLGRN-LIKKIENL 88 (198)
T ss_dssp TCSEEECCBCCTTCCCCH--HHHHHTTTCSEEECSEEE-ESCC-----------CCHHHHTTCCEEEEEEE-EECSCSSH
T ss_pred chheeEeccccCcHhhhh--HHHhcCCCCCEEECCCCC-Cccc-----------cccccCCCCCEEECCCC-Ccccccch
Confidence 3556666543 2344443 367888899999988764 3322 23356789999999887 5666643
Q ss_pred cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccC--CCccCCccceeeeccCcc
Q 024866 138 LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW--KPLPFTHLKKMAVLMCDQ 214 (261)
Q Consensus 138 l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~--~~~~~p~L~~L~i~~C~~ 214 (261)
...+++|++|+++++ .+..+. .+..+++|+.|++.+.. ++.+.. ....+++|+.|.+.+++-
T Consensus 89 ~~~~~~L~~L~L~~N-~l~~l~-------------~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 89 DAVADTLEELWISYN-QIASLS-------------GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHHHHCSEEEEEEE-ECCCHH-------------HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred hhcCCcCCEEECcCC-cCCcCC-------------ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence 345689999999987 444432 23457888888887753 554432 234578888888888754
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.37 E-value=0.00039 Score=65.28 Aligned_cols=91 Identities=15% Similarity=0.086 Sum_probs=65.8
Q ss_pred CCCcCCCCCcEEEEecCCCCCCCC-ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccc
Q 024866 113 REPFVFRSLHRVIIGECHKLKDVT-FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHL 191 (261)
Q Consensus 113 p~~~~~~~L~~L~l~~C~~l~~l~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L 191 (261)
|..+.+++|+.|+++++ +++.++ .++.+++|++|+++++ .++.+. .+..+++|+.|++++. ++
T Consensus 457 p~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-------------~l~~l~~L~~L~Ls~N-~l 520 (567)
T 1dce_A 457 CHLEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-------------GVANLPRLQELLLCNN-RL 520 (567)
T ss_dssp CCGGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-------------GGTTCSSCCEEECCSS-CC
T ss_pred cCccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCCc-------------ccCCCCCCcEEECCCC-CC
Confidence 44577889999999887 576663 4567899999999886 343321 3456889999999886 47
Q ss_pred ccc--cCCCccCCccceeeeccCccCCCCCC
Q 024866 192 KSI--FWKPLPFTHLKKMAVLMCDQLRKPPL 220 (261)
Q Consensus 192 ~~i--~~~~~~~p~L~~L~i~~C~~L~~lp~ 220 (261)
+.+ +.....+++|+.|.+++++ ++.+|.
T Consensus 521 ~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~ 550 (567)
T 1dce_A 521 QQSAAIQPLVSCPRLVLLNLQGNS-LCQEEG 550 (567)
T ss_dssp CSSSTTGGGGGCTTCCEEECTTSG-GGGSSS
T ss_pred CCCCCcHHHhcCCCCCEEEecCCc-CCCCcc
Confidence 776 4455678999999998875 555554
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.31 E-value=0.0013 Score=52.54 Aligned_cols=124 Identities=15% Similarity=0.119 Sum_probs=81.9
Q ss_pred eEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC--ccc
Q 024866 62 RSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT--FLV 139 (261)
Q Consensus 62 ~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~--~l~ 139 (261)
+++++++. +++.++. .+. .+|+.|++++.. +..+..+ ...+.+++|+.|+++++ +++.+. .+.
T Consensus 11 ~~l~~s~~-~l~~ip~--~~~--~~l~~L~l~~n~-i~~~~~~--------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~ 75 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPR--DIP--LHTTELLLNDNE-LGRISSD--------GLFGRLPHLVKLELKRN-QLTGIEPNAFE 75 (192)
T ss_dssp TEEECTTS-CCSSCCS--CCC--TTCSEEECCSCC-CCSBCCS--------CSGGGCTTCCEEECCSS-CCCCBCTTTTT
T ss_pred CEEEcCCC-CcCcCcc--CCC--CCCCEEECCCCc-CCccCCc--------cccccCCCCCEEECCCC-CCCCcCHhHcC
Confidence 45666653 4555542 222 388899888764 3322110 01357899999999987 576652 356
Q ss_pred cCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccC-CCccCCccceeeeccCc
Q 024866 140 FAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW-KPLPFTHLKKMAVLMCD 213 (261)
Q Consensus 140 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p~L~~L~i~~C~ 213 (261)
.+++|++|+++++ .++.+.. ..+..+++|+.|++.+.. ++.+.. ....+++|+.|.+++.+
T Consensus 76 ~l~~L~~L~Ls~N-~l~~~~~-----------~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 76 GASHIQELQLGEN-KIKEISN-----------KMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp TCTTCCEEECCSC-CCCEECS-----------SSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCC
T ss_pred CcccCCEEECCCC-cCCccCH-----------HHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCC
Confidence 7899999999986 3444332 134568999999999864 666643 34468899999887754
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.22 E-value=0.0016 Score=51.19 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=19.4
Q ss_pred cCCCCCcEEEEecCCCCCCCCc--cccCCCCcEEEEecc
Q 024866 116 FVFRSLHRVIIGECHKLKDVTF--LVFAPNLKSLRLFDC 152 (261)
Q Consensus 116 ~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~L~i~~C 152 (261)
..+++|+.|++++. +++.++. ...+++|++|++++.
T Consensus 54 ~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 54 DHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 34556666666555 4555432 234566666666553
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.19 E-value=0.00065 Score=65.63 Aligned_cols=102 Identities=16% Similarity=0.104 Sum_probs=76.2
Q ss_pred CcCCCCCcEEEEecCCCCCCCC-ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccccc
Q 024866 115 PFVFRSLHRVIIGECHKLKDVT-FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKS 193 (261)
Q Consensus 115 ~~~~~~L~~L~l~~C~~l~~l~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~ 193 (261)
...+++|+.|+++++ ++..++ .+..+++|++|+++++ .+..+. ..+..+++|+.|+|++.. |+.
T Consensus 220 ~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp------------~~~~~l~~L~~L~Ls~N~-l~~ 284 (727)
T 4b8c_D 220 KYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGN-SLTELP------------AEIKNLSNLRVLDLSHNR-LTS 284 (727)
T ss_dssp --CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTS-CCSCCC------------GGGGGGTTCCEEECTTSC-CSS
T ss_pred hccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCC-cCcccC------------hhhhCCCCCCEEeCcCCc-CCc
Confidence 356789999999988 466664 3457899999999987 344332 245678999999999976 778
Q ss_pred ccCCCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866 194 IFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR 233 (261)
Q Consensus 194 i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 233 (261)
++.....+++|++|.++++ +++.+|.. .....+|+.+.
T Consensus 285 lp~~~~~l~~L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~ 322 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDN-MVTTLPWE-FGNLCNLQFLG 322 (727)
T ss_dssp CCSSGGGGTTCSEEECCSS-CCCCCCSS-TTSCTTCCCEE
T ss_pred cChhhcCCCCCCEEECCCC-CCCccChh-hhcCCCccEEe
Confidence 8777778999999999998 67888875 33345666654
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.03 E-value=0.0031 Score=49.26 Aligned_cols=99 Identities=15% Similarity=0.164 Sum_probs=50.3
Q ss_pred eEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc--cc
Q 024866 62 RSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF--LV 139 (261)
Q Consensus 62 ~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~--l~ 139 (261)
+.+++++ .+++.++. .+ .++|+.|++++.. +..+.. .....+++|+.|++++. +++.++. ..
T Consensus 12 ~~l~~s~-n~l~~ip~--~~--~~~l~~L~L~~N~-i~~~~~---------~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~ 75 (170)
T 3g39_A 12 TTVDCSG-KSLASVPT--GI--PTTTQVLYLYDNQ-ITKLEP---------GVFDRLTQLTRLDLDNN-QLTVLPAGVFD 75 (170)
T ss_dssp TEEECTT-SCCSSCCS--CC--CTTCSEEECCSSC-CCCCCT---------TTTTTCTTCSEEECCSS-CCCCCCTTTTT
T ss_pred CEEEeCC-CCcCccCc--cC--CCCCcEEEcCCCc-CCccCh---------hhhcCcccCCEEECCCC-CcCccChhhcc
Confidence 3455554 24445532 22 2566666666543 222210 11245667777777665 4555532 24
Q ss_pred cCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCC
Q 024866 140 FAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDL 188 (261)
Q Consensus 140 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~ 188 (261)
.+++|++|++++. .++.+.. ..+..+++|+.|++.+-
T Consensus 76 ~l~~L~~L~L~~N-~l~~~~~-----------~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 76 KLTQLTQLSLNDN-QLKSIPR-----------GAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TCTTCCEEECCSS-CCCCCCT-----------TTTTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC-ccCEeCH-----------HHhcCCCCCCEEEeCCC
Confidence 5677777777664 3333221 12344666777776653
No 142
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.96 E-value=0.0023 Score=55.55 Aligned_cols=100 Identities=25% Similarity=0.283 Sum_probs=68.3
Q ss_pred EEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC--ccccC
Q 024866 64 LQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT--FLVFA 141 (261)
Q Consensus 64 L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~--~l~~l 141 (261)
++.++..++..++ . +..+.+|+.|++++...+..+..+ ..+.+++|+.|+|++. +++.+. .+..+
T Consensus 13 v~~~~~n~l~~ip--~-l~~~~~L~~L~l~~~n~l~~~~~~---------~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l 79 (347)
T 2ifg_A 13 LRCTRDGALDSLH--H-LPGAENLTELYIENQQHLQHLELR---------DLRGLGELRNLTIVKS-GLRFVAPDAFHFT 79 (347)
T ss_dssp EECCSSCCCTTTT--T-SCSCSCCSEEECCSCSSCCEECGG---------GSCSCCCCSEEECCSS-CCCEECTTGGGSC
T ss_pred EEcCCCCCCCccC--C-CCCCCCeeEEEccCCCCCCCcChh---------HhccccCCCEEECCCC-ccceeCHHHhcCC
Confidence 4444433566663 3 888899999999987777766321 1357899999999987 677764 34679
Q ss_pred CCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCc
Q 024866 142 PNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLP 189 (261)
Q Consensus 142 p~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~ 189 (261)
++|++|++++. .+..+... .+..+ .|+.|++.+-+
T Consensus 80 ~~L~~L~l~~N-~l~~~~~~-----------~~~~~-~L~~l~l~~N~ 114 (347)
T 2ifg_A 80 PRLSRLNLSFN-ALESLSWK-----------TVQGL-SLQELVLSGNP 114 (347)
T ss_dssp SCCCEEECCSS-CCSCCCST-----------TTCSC-CCCEEECCSSC
T ss_pred cCCCEEeCCCC-ccceeCHH-----------HcccC-CceEEEeeCCC
Confidence 99999999984 55544321 11223 39999997644
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.96 E-value=0.0016 Score=51.16 Aligned_cols=81 Identities=16% Similarity=0.175 Sum_probs=60.2
Q ss_pred cceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCC-CcCCCCCcEEEEecCCCCCCCCc
Q 024866 59 SCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRRE-PFVFRSLHRVIIGECHKLKDVTF 137 (261)
Q Consensus 59 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~-~~~~~~L~~L~l~~C~~l~~l~~ 137 (261)
.+|+.|++++. .+..++. ..+..+++|+.|++++.. +..+. +. ...+++|+.|++++. +++.++.
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~i~----------~~~~~~l~~L~~L~L~~N-~l~~l~~ 98 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEP-GVFDHLVNLQQLYFNSNK-LTAIP----------TGVFDKLTQLTQLDLNDN-HLKSIPR 98 (174)
T ss_dssp TTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCC----------TTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CCCcEEEeCCC-CccccCH-HHhcCCcCCCEEECCCCC-CCccC----------hhHhCCcchhhEEECCCC-ccceeCH
Confidence 57899999985 4566643 568899999999999863 54331 11 256899999999987 6777643
Q ss_pred --cccCCCCcEEEEeccc
Q 024866 138 --LVFAPNLKSLRLFDCG 153 (261)
Q Consensus 138 --l~~lp~L~~L~i~~C~ 153 (261)
+..+++|++|++++..
T Consensus 99 ~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 99 GAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTTTTCTTCSEEECCSSC
T ss_pred HHhccccCCCEEEeCCCC
Confidence 5678999999998753
No 144
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.81 E-value=0.0017 Score=57.56 Aligned_cols=145 Identities=16% Similarity=0.033 Sum_probs=83.0
Q ss_pred HHHHhhCcccccceeEEEEcCCCC-CCcc------cccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCC
Q 024866 48 LQILLSSNKLKSCIRSLQLRLVRD-TPSI------IDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRS 120 (261)
Q Consensus 48 l~~l~~~~~l~~~L~~L~L~~c~~-l~~l------~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~ 120 (261)
++.+..+...+++|+.|.|.+... -..+ .+...+..+++|+.|.++++..+. + +. ...++
T Consensus 128 ~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l-----------~~-~~~~~ 194 (362)
T 2ra8_A 128 ADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-I-----------GK-KPRPN 194 (362)
T ss_dssp HHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-C-----------CS-CBCTT
T ss_pred HHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-e-----------cc-ccCCC
Confidence 455665555566899998865421 0001 122345678899999998874332 1 21 23789
Q ss_pred CcEEEEecCCCCCCCC--cc--ccCCCCcEEEEecccccccccccccccccCccc--CCcccCCcccEEeccCCcccc--
Q 024866 121 LHRVIIGECHKLKDVT--FL--VFAPNLKSLRLFDCGAMEEIISVGKIAETPEMM--GHISPFENLQSLDLDDLPHLK-- 192 (261)
Q Consensus 121 L~~L~l~~C~~l~~l~--~l--~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~--~~~~~~p~L~~L~L~~~~~L~-- 192 (261)
|+.|.+..|. +..-. -+ ..+|+|++|+++.+.+.. .. .... ..+. .....||+|+.|.+.+|.--.
T Consensus 195 L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~--~~-~~~~--~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~ 268 (362)
T 2ra8_A 195 LKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDY--GF-DGDM--NVFRPLFSKDRFPNLKWLGIVDAEEQNVV 268 (362)
T ss_dssp CSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGG--TC-CSCG--GGTGGGSCTTTCTTCCEEEEESCTTHHHH
T ss_pred CcEEEEecCC-CChHHHHHHHHccCCCCcEEEEecccccc--cc-chhH--HHHHHHHhcCCCCCcCEEeCCCCCCchHH
Confidence 9999998763 43211 11 268999999987432210 00 0000 0000 011358999999998876321
Q ss_pred --cccCCCccCCccceeeeccC
Q 024866 193 --SIFWKPLPFTHLKKMAVLMC 212 (261)
Q Consensus 193 --~i~~~~~~~p~L~~L~i~~C 212 (261)
.+. ....+|+|+.|+++.+
T Consensus 269 ~~~la-~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 269 VEMFL-ESDILPQLETMDISAG 289 (362)
T ss_dssp HHHHH-HCSSGGGCSEEECCSS
T ss_pred HHHHH-hCccCCCCCEEECCCC
Confidence 111 1235799999999765
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.75 E-value=0.0072 Score=52.37 Aligned_cols=87 Identities=16% Similarity=0.175 Sum_probs=61.6
Q ss_pred CCCcCCCCCcEEEEecCCCCCCCCc--cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcc
Q 024866 113 REPFVFRSLHRVIIGECHKLKDVTF--LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPH 190 (261)
Q Consensus 113 p~~~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~ 190 (261)
|..+.+++|+.|+|++...+..+.. +..+++|++|++++. .++.+.. ..+..+++|+.|+|++- +
T Consensus 25 p~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~-----------~~~~~l~~L~~L~l~~N-~ 91 (347)
T 2ifg_A 25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAP-----------DAFHFTPRLSRLNLSFN-A 91 (347)
T ss_dssp TTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECT-----------TGGGSCSCCCEEECCSS-C
T ss_pred CCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCH-----------HHhcCCcCCCEEeCCCC-c
Confidence 3356678899999987667877653 567899999999986 5665543 13456889999999884 5
Q ss_pred cccccCCCccCCccceeeeccC
Q 024866 191 LKSIFWKPLPFTHLKKMAVLMC 212 (261)
Q Consensus 191 L~~i~~~~~~~p~L~~L~i~~C 212 (261)
|..++...+....|+.|.+.+.
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSS
T ss_pred cceeCHHHcccCCceEEEeeCC
Confidence 7777765444344888877654
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.72 E-value=0.012 Score=45.84 Aligned_cols=84 Identities=17% Similarity=0.146 Sum_probs=61.6
Q ss_pred cCCCCCcEEEEecCCCCCCCC--ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccccc
Q 024866 116 FVFRSLHRVIIGECHKLKDVT--FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKS 193 (261)
Q Consensus 116 ~~~~~L~~L~l~~C~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~ 193 (261)
..+++|+.|++++. +++.+. .+..+++|++|++++. .++.+.. ..+..+++|+.|++.+. +++.
T Consensus 27 ~~~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~-----------~~f~~l~~L~~L~L~~N-~l~~ 92 (170)
T 3g39_A 27 GIPTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPA-----------GVFDKLTQLTQLSLNDN-QLKS 92 (170)
T ss_dssp CCCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCT-----------TTTTTCTTCCEEECCSS-CCCC
T ss_pred cCCCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccCh-----------hhccCCCCCCEEECCCC-ccCE
Confidence 34689999999887 677763 2567899999999986 4554432 13456899999999886 4787
Q ss_pred ccCC-CccCCccceeeeccCc
Q 024866 194 IFWK-PLPFTHLKKMAVLMCD 213 (261)
Q Consensus 194 i~~~-~~~~p~L~~L~i~~C~ 213 (261)
+... ...+++|+.|.+++-+
T Consensus 93 ~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 93 IPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCTTTTTTCTTCCEEECCSSC
T ss_pred eCHHHhcCCCCCCEEEeCCCC
Confidence 7764 4468899999887653
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.12 E-value=0.00075 Score=59.91 Aligned_cols=138 Identities=9% Similarity=-0.012 Sum_probs=72.5
Q ss_pred ceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC---
Q 024866 60 CIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT--- 136 (261)
Q Consensus 60 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~--- 136 (261)
+|+.|+|++|. +...........+++|+.|++++|. +......... ..+ ....++|+.|++++| ++.+..
T Consensus 102 ~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~--~~L--~~~~~~L~~L~Ls~n-~l~~~~~~~ 174 (372)
T 3un9_A 102 ALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLR--DLL--LHDQCQITTLRLSNN-PLTAAGVAV 174 (372)
T ss_dssp CEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHH--HHH--HSTTCCCCEEECCSS-CCHHHHHHH
T ss_pred CceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHH--HHH--HhcCCccceeeCCCC-CCChHHHHH
Confidence 57777777663 2222111112345567777777663 2110000000 000 013468888888888 454321
Q ss_pred ---ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccC-----CCccCCccceee
Q 024866 137 ---FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW-----KPLPFTHLKKMA 208 (261)
Q Consensus 137 ---~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-----~~~~~p~L~~L~ 208 (261)
.+...++|++|++++|. +.+.... .+...+...++|++|++.++. +..... .....++|++|+
T Consensus 175 l~~~L~~~~~L~~L~Ls~N~-l~~~g~~-------~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~ 245 (372)
T 3un9_A 175 LMEGLAGNTSVTHLSLLHTG-LGDEGLE-------LLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLH 245 (372)
T ss_dssp HHHHHHTCSSCCEEECTTSS-CHHHHHH-------HHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEE
T ss_pred HHHHHhcCCCcCEEeCCCCC-CCcHHHH-------HHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEe
Confidence 12457888888888874 3321100 011133446789999998874 443211 112358899999
Q ss_pred eccCc
Q 024866 209 VLMCD 213 (261)
Q Consensus 209 i~~C~ 213 (261)
+++|+
T Consensus 246 Ls~N~ 250 (372)
T 3un9_A 246 LYFNE 250 (372)
T ss_dssp CTTSS
T ss_pred ccCCC
Confidence 98884
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.95 E-value=0.14 Score=45.70 Aligned_cols=60 Identities=12% Similarity=-0.018 Sum_probs=29.5
Q ss_pred CCcccEEeccCCcccccccCCCc-cCCccceeeeccCccCCCCCCCCcccc-CCceEEEcchhhhh
Q 024866 177 FENLQSLDLDDLPHLKSIFWKPL-PFTHLKKMAVLMCDQLRKPPLDSNSAK-ERKFVIRGYTGWWN 240 (261)
Q Consensus 177 ~p~L~~L~L~~~~~L~~i~~~~~-~~p~L~~L~i~~C~~L~~lp~~~~~~~-~~l~~~~~~~~ww~ 240 (261)
+++|+.+.|.. +++.+....+ .+ +|+.|.+.+. .+..++.+..... ..+..++-+...-+
T Consensus 322 c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 322 NRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHHHH
Confidence 35555555532 3555544333 24 6777776654 3344444433322 45556665555433
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.55 E-value=0.43 Score=42.38 Aligned_cols=143 Identities=9% Similarity=0.114 Sum_probs=88.1
Q ss_pred cceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC--
Q 024866 59 SCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT-- 136 (261)
Q Consensus 59 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~-- 136 (261)
..|+.+.+.+ +++.++. .++..+.+|+.+.+.+ +++.|..... .. .+|+.+.+.+ +++.+.
T Consensus 203 ~~L~~l~lp~--~l~~I~~-~aF~~~~~L~~l~l~~--~l~~I~~~aF---------~~-~~L~~i~lp~--~i~~I~~~ 265 (401)
T 4fdw_A 203 AGIEEVLLPV--TLKEIGS-QAFLKTSQLKTIEIPE--NVSTIGQEAF---------RE-SGITTVKLPN--GVTNIASR 265 (401)
T ss_dssp CCCSEEECCT--TCCEECT-TTTTTCTTCCCEECCT--TCCEECTTTT---------TT-CCCSEEEEET--TCCEECTT
T ss_pred cccCEEEeCC--chheehh-hHhhCCCCCCEEecCC--CccCcccccc---------cc-CCccEEEeCC--CccEEChh
Confidence 3577777763 4666654 5677788888888764 4555532111 12 5888888854 355442
Q ss_pred ccccCCCCcEEEEeccccc----ccccccccccccCcccCCcccCCcccEEeccCCcccccccCCCc-cCCccceeeecc
Q 024866 137 FLVFAPNLKSLRLFDCGAM----EEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPL-PFTHLKKMAVLM 211 (261)
Q Consensus 137 ~l~~lp~L~~L~i~~C~~L----~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~-~~p~L~~L~i~~ 211 (261)
....+++|+++.+.+...- +.+. ...+..+++|+.+.+. .+++.+....+ .+++|+.+.+.+
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~-----------~~aF~~c~~L~~l~l~--~~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIH-----------PYCLEGCPKLARFEIP--ESIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEEC-----------TTTTTTCTTCCEECCC--TTCCEECTTTTTTCCSCCEEEECT
T ss_pred HhhCCCCCCEEEeCCccccCCcccEEC-----------HHHhhCCccCCeEEeC--CceEEEhhhhhcCCCCccEEEECc
Confidence 2346889999988764211 0111 1144557788888887 35777766544 368888888843
Q ss_pred CccCCCCCCCCccccCCceEEEc
Q 024866 212 CDQLRKPPLDSNSAKERKFVIRG 234 (261)
Q Consensus 212 C~~L~~lp~~~~~~~~~l~~~~~ 234 (261)
+++.++.+....+ .|+.+..
T Consensus 333 --~l~~I~~~aF~~~-~L~~l~l 352 (401)
T 4fdw_A 333 --NVTQINFSAFNNT-GIKEVKV 352 (401)
T ss_dssp --TCCEECTTSSSSS-CCCEEEE
T ss_pred --cccEEcHHhCCCC-CCCEEEE
Confidence 4666766666555 6666553
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=94.62 E-value=0.002 Score=57.18 Aligned_cols=159 Identities=16% Similarity=0.070 Sum_probs=88.3
Q ss_pred ccccccccCCCc--chhhhhhcc-----cCCceEEEEEcch--HHHHHHhhCcccccceeEEEEcCCCCCCcccc---cc
Q 024866 12 ASEESVLFGGGE--VLVQELLGL-----KYLEVLELTLGSY--QALQILLSSNKLKSCIRSLQLRLVRDTPSIID---AT 79 (261)
Q Consensus 12 ~~~~~~~~~~~~--~~l~eL~~L-----~~L~~L~i~~~~~--~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~---~~ 79 (261)
..+..++++... .....+... .+|+.|++..... .....+.. .+.+|+.|+|++| .+...+. ..
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~---~L~~L~~L~Ls~n-~l~~~~~~~L~~ 148 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP---VFLRARKLGLQLN-SLGPEACKDLRD 148 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH---HHHTEEEEECCSS-CCCHHHHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH---HHHhccHhhcCCC-CCCHHHHHHHHH
Confidence 344555555432 223333332 5788888775432 12233222 2347999999998 4443322 01
Q ss_pred cc-cccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCC------CccccCCCCcEEEEecc
Q 024866 80 AF-ADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDV------TFLVFAPNLKSLRLFDC 152 (261)
Q Consensus 80 ~l-~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l------~~l~~lp~L~~L~i~~C 152 (261)
.+ ...++|+.|++++|. +........ .......++|++|++++|. +.+. ..+...++|++|++++|
T Consensus 149 ~L~~~~~~L~~L~Ls~n~-l~~~~~~~l-----~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNP-LTAAGVAVL-----MEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HHHSTTCCCCEEECCSSC-CHHHHHHHH-----HHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HHHhcCCccceeeCCCCC-CChHHHHHH-----HHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 12 245789999999985 321110000 0001346789999999884 5542 12345789999999998
Q ss_pred cccccccccccccccCcccCCcccCCcccEEeccCCc
Q 024866 153 GAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLP 189 (261)
Q Consensus 153 ~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~ 189 (261)
. +.+.... .+...+...++|++|+|.+++
T Consensus 222 ~-i~~~g~~-------~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 222 G-AGDTAAL-------ALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp C-CCHHHHH-------HHHHHHHHCSSCCEEECTTSS
T ss_pred C-CCHHHHH-------HHHHHHHhCCCCCEEeccCCC
Confidence 4 3322110 011123356889999999875
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=89.17 E-value=0.46 Score=39.94 Aligned_cols=61 Identities=23% Similarity=0.210 Sum_probs=35.4
Q ss_pred cCCCCCcEEEEecCCCCCCCCcc----ccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCc
Q 024866 116 FVFRSLHRVIIGECHKLKDVTFL----VFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLP 189 (261)
Q Consensus 116 ~~~~~L~~L~l~~C~~l~~l~~l----~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~ 189 (261)
..+++|+.|++++. ++..+..+ ..+|+|+.|++++. .+..+.... .+..+ +|++|.+.+-|
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~----------~l~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELD----------KIKGL-KLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGG----------GGTTS-CCSEEECTTST
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhh----------hcccC-CcceEEccCCc
Confidence 35677888888765 56655322 36788888888763 343321100 11123 77788887766
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=89.02 E-value=3.8 Score=35.69 Aligned_cols=55 Identities=18% Similarity=0.083 Sum_probs=30.0
Q ss_pred CCcccEEeccCCcccccccCCCc-cCCccceeeeccCccCCCCCCCCccccCCceEEEcc
Q 024866 177 FENLQSLDLDDLPHLKSIFWKPL-PFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIRGY 235 (261)
Q Consensus 177 ~p~L~~L~L~~~~~L~~i~~~~~-~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~~~ 235 (261)
..+|+++.+.. +++.|....+ .+.+|+.+.+.. +++.++.+....+.+|+.+.-+
T Consensus 319 c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 319 CTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred CCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence 34455555431 2444443322 346666666542 2556666666666778887755
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=87.08 E-value=0.072 Score=41.97 Aligned_cols=12 Identities=8% Similarity=-0.094 Sum_probs=6.6
Q ss_pred CCcccEEeccCC
Q 024866 177 FENLQSLDLDDL 188 (261)
Q Consensus 177 ~p~L~~L~L~~~ 188 (261)
.+.|++|++.++
T Consensus 150 n~~L~~L~L~~n 161 (185)
T 1io0_A 150 NTTLLKFGYHFT 161 (185)
T ss_dssp CSSCCEEECCCS
T ss_pred CCCcCEEeccCC
Confidence 355666666544
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=85.48 E-value=3.7 Score=35.78 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=21.5
Q ss_pred CCcccEEeccCCcccccccCCCc-cCCccceeeeccCccCCCCCCCCccccCCceEE
Q 024866 177 FENLQSLDLDDLPHLKSIFWKPL-PFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVI 232 (261)
Q Consensus 177 ~p~L~~L~L~~~~~L~~i~~~~~-~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 232 (261)
..+|+++.|.. +++.|....+ .+.+|+.+.+- .+++.++.+....+.+|+.+
T Consensus 310 c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip--~sv~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 310 CISLKSIDIPE--GITQILDDAFAGCEQLERIAIP--SSVTKIPESAFSNCTALNNI 362 (394)
T ss_dssp CTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEC--TTCCBCCGGGGTTCTTCCEE
T ss_pred CCCcCEEEeCC--cccEehHhHhhCCCCCCEEEEC--cccCEEhHhHhhCCCCCCEE
Confidence 34455555432 2444433322 23455555542 12444444433334444443
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=82.52 E-value=0.48 Score=39.83 Aligned_cols=62 Identities=18% Similarity=0.065 Sum_probs=40.5
Q ss_pred cccCCCCeEEEeccCCcceEecccccccccCCC-CcCCCCCcEEEEecCCCCCCCCccccCC--CCcEEEEeccc
Q 024866 82 ADLNHLNELYIFKGIELEELKIDYTEIVRKRRE-PFVFRSLHRVIIGECHKLKDVTFLVFAP--NLKSLRLFDCG 153 (261)
Q Consensus 82 ~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~-~~~~~~L~~L~l~~C~~l~~l~~l~~lp--~L~~L~i~~C~ 153 (261)
..+++|+.|++++.. +..+. .++. ...+++|+.|++++- +++++..+..+. +|++|++.+.+
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~--------~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLD--------DMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCG--------GGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTST
T ss_pred hhCCCCCEEECCCCC-CCCCc--------cchhHHhhCCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCc
Confidence 357788888887643 33221 1111 246899999999875 677654444444 89999999865
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=80.96 E-value=22 Score=30.29 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=15.3
Q ss_pred cCCcccEEeccCCcccccccCCCc-cCCccceeee
Q 024866 176 PFENLQSLDLDDLPHLKSIFWKPL-PFTHLKKMAV 209 (261)
Q Consensus 176 ~~p~L~~L~L~~~~~L~~i~~~~~-~~p~L~~L~i 209 (261)
...+|+++.|.. +++.|....+ .+.+|+.+.+
T Consensus 308 ~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 308 DCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred CCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 345666666632 3555543322 2345555544
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=70.47 E-value=18 Score=31.32 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=20.4
Q ss_pred cccCCcccEEeccCCcccccccCCCc-cCCccceeeec
Q 024866 174 ISPFENLQSLDLDDLPHLKSIFWKPL-PFTHLKKMAVL 210 (261)
Q Consensus 174 ~~~~p~L~~L~L~~~~~L~~i~~~~~-~~p~L~~L~i~ 210 (261)
+....+|+++.|.. +++.|....+ .+++|+.+.+.
T Consensus 330 F~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 330 FAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp TTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEES
T ss_pred hhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEEC
Confidence 33456677777742 3566654333 36777777664
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=68.23 E-value=37 Score=28.86 Aligned_cols=33 Identities=12% Similarity=0.239 Sum_probs=16.5
Q ss_pred cCCcccEEeccCCcccccccCCCc-cCCccceeee
Q 024866 176 PFENLQSLDLDDLPHLKSIFWKPL-PFTHLKKMAV 209 (261)
Q Consensus 176 ~~p~L~~L~L~~~~~L~~i~~~~~-~~p~L~~L~i 209 (261)
..++|+.+.+.+ ..++.|....+ .+.+|+.+.+
T Consensus 284 ~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 284 GCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp TCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEEC
T ss_pred cccccccccccc-cccceehhhhhcCCCCCCEEEc
Confidence 445677666643 12445543322 3455666655
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=65.25 E-value=3.2 Score=36.21 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=16.6
Q ss_pred ccCCcccEEeccCCcccccccCCCc-cCCccceeee
Q 024866 175 SPFENLQSLDLDDLPHLKSIFWKPL-PFTHLKKMAV 209 (261)
Q Consensus 175 ~~~p~L~~L~L~~~~~L~~i~~~~~-~~p~L~~L~i 209 (261)
....+|+.+.+.+ .++.+....+ .+++|+.+.+
T Consensus 159 ~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l 192 (394)
T 4fs7_A 159 ATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKL 192 (394)
T ss_dssp TTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCC
T ss_pred cccCCCcEEecCC--ccceeccccccCCCCceEEEc
Confidence 3445677776642 2444443322 2455665554
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=61.06 E-value=7.8 Score=29.88 Aligned_cols=112 Identities=14% Similarity=-0.022 Sum_probs=62.1
Q ss_pred eccccccccCC-C------cchhhhhhcccCCceEEEEEcch--HHHHHHhhCcccccceeEEEEcCCCCCCccc---cc
Q 024866 11 EASEESVLFGG-G------EVLVQELLGLKYLEVLELTLGSY--QALQILLSSNKLKSCIRSLQLRLVRDTPSII---DA 78 (261)
Q Consensus 11 ~~~~~~~~~~~-~------~~~l~eL~~L~~L~~L~i~~~~~--~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~---~~ 78 (261)
+..++.++++. . ....+.|...++|+.|++..... .....+........+|++|+|+++. +..-+ +.
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~l~ 114 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILALV 114 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHHHH
Confidence 34555666654 2 22345566678899998875432 2233343333333579999999873 33321 22
Q ss_pred ccccccCCCCeEEE--eccCCcceEecccccccccCCCCcCCCCCcEEEEecC
Q 024866 79 TAFADLNHLNELYI--FKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGEC 129 (261)
Q Consensus 79 ~~l~~l~~L~~L~i--~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C 129 (261)
..+...++|++|++ +++. +.. +... .........++|++|++.++
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~-i~~---~g~~--~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQP-LGN---NVEM--EIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSC-CCH---HHHH--HHHHHHHHCSSCCEEECCCS
T ss_pred HHHHhCCCceEEEecCCCCC-CCH---HHHH--HHHHHHHhCCCcCEEeccCC
Confidence 45677789999999 4443 221 0000 00000123468999999877
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=43.13 E-value=19 Score=26.16 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=6.3
Q ss_pred CCCCCcEEEEec
Q 024866 117 VFRSLHRVIIGE 128 (261)
Q Consensus 117 ~~~~L~~L~l~~ 128 (261)
.+++|+.|+|.+
T Consensus 53 ~l~~L~~L~L~~ 64 (130)
T 3rfe_A 53 ALPALRTAHLGA 64 (130)
T ss_dssp GCTTCCEEECCS
T ss_pred hccccCEEEecC
Confidence 345555555553
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=33.58 E-value=42 Score=24.15 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=23.2
Q ss_pred cCCCCCcEEEEecCCCCCCCCc--cccCCCCcEEEEec
Q 024866 116 FVFRSLHRVIIGECHKLKDVTF--LVFAPNLKSLRLFD 151 (261)
Q Consensus 116 ~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~L~i~~ 151 (261)
+..++|+.|+|++- +++.++. +..+++|++|++.+
T Consensus 28 ~lp~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 28 AFPVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp CCCTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCS
T ss_pred CCCcCCCEEECCCC-cCCccChhhhhhccccCEEEecC
Confidence 34457888888765 5666632 34577888887775
Done!