Your job contains 1 sequence.
>024868
MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD
ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF
SVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI
WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK
RLLRKPASVLSISLDGKYLAM
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 024868
(261 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2083850 - symbol:PHF1 "AT3G52190" species:3702... 908 4.5e-91 1
TAIR|locus:2159697 - symbol:AT5G50550 "AT5G50550" species... 278 2.6e-24 1
TAIR|locus:2832497 - symbol:AT5G50650 "AT5G50650" species... 278 2.6e-24 1
TAIR|locus:2049582 - symbol:STL2P "AT2G01470" species:370... 256 7.4e-22 1
MGI|MGI:1355326 - symbol:Preb "prolactin regulatory eleme... 131 5.8e-06 1
RGD|61929 - symbol:Preb "prolactin regulatory element bin... 129 9.8e-06 1
UNIPROTKB|E2RBH1 - symbol:PREB "Uncharacterized protein" ... 127 1.7e-05 1
GENEDB_PFALCIPARUM|PFL0970w - symbol:PFL0970w "pre-mRNA s... 127 3.0e-05 1
UNIPROTKB|Q8I5L1 - symbol:PFL0970w "Pre-mRNA splicing fac... 127 3.0e-05 1
ZFIN|ZDB-GENE-040426-916 - symbol:smu1 "smu-1 suppressor ... 126 3.0e-05 1
TAIR|locus:2027749 - symbol:SMU1 "AT1G73720" species:3702... 124 5.0e-05 1
DICTYBASE|DDB_G0284621 - symbol:pwp2 "periodic tryptophan... 126 6.6e-05 1
UNIPROTKB|Q5ZME8 - symbol:SMU1 "WD40 repeat-containing pr... 122 8.6e-05 1
UNIPROTKB|Q2TBS9 - symbol:SMU1 "WD40 repeat-containing pr... 122 8.6e-05 1
UNIPROTKB|Q2TAY7 - symbol:SMU1 "WD40 repeat-containing pr... 122 8.6e-05 1
MGI|MGI:1915546 - symbol:Smu1 "smu-1 suppressor of mec-8 ... 122 8.6e-05 1
RGD|620694 - symbol:Smu1 "smu-1 suppressor of mec-8 and u... 122 8.6e-05 1
ZFIN|ZDB-GENE-050522-274 - symbol:wdr13 "WD repeat domain... 121 0.00010 1
FB|FBgn0031779 - symbol:CG9175 species:7227 "Drosophila m... 121 0.00011 2
ZFIN|ZDB-GENE-050419-255 - symbol:daw1 "dynein assembly f... 119 0.00014 1
UNIPROTKB|F1SED4 - symbol:PREB "Uncharacterized protein" ... 118 0.00018 1
UNIPROTKB|Q9HCU5 - symbol:PREB "Prolactin regulatory elem... 117 0.00023 1
UNIPROTKB|E1BL12 - symbol:PREB "Uncharacterized protein" ... 117 0.00023 1
ZFIN|ZDB-GENE-000616-4 - symbol:apaf1 "apoptotic protease... 122 0.00027 1
UNIPROTKB|F1MUW4 - symbol:APAF1 "Uncharacterized protein"... 121 0.00035 1
RGD|1310215 - symbol:Taf5l "TAF5-like RNA polymerase II, ... 100 0.00049 1
UNIPROTKB|I3LSG8 - symbol:I3LSG8 "Uncharacterized protein... 118 0.00058 1
WB|WBGene00004895 - symbol:smu-1 species:6239 "Caenorhabd... 114 0.00069 1
UNIPROTKB|F1SQT5 - symbol:APAF1 "Uncharacterized protein"... 118 0.00076 1
UNIPROTKB|J9JHP3 - symbol:APAF1 "Apoptotic protease-activ... 124 0.00081 2
UNIPROTKB|J9NS21 - symbol:APAF1 "Apoptotic protease-activ... 124 0.00086 2
UNIPROTKB|E1BUU5 - symbol:WDHD1 "Uncharacterized protein"... 117 0.00087 1
UNIPROTKB|F1Q410 - symbol:APAF1 "Apoptotic protease-activ... 124 0.00088 2
WB|WBGene00010496 - symbol:sec-12 species:6239 "Caenorhab... 112 0.00089 1
TAIR|locus:2140215 - symbol:WDR5b "AT4G02730" species:370... 110 0.00099 1
>TAIR|locus:2083850 [details] [associations]
symbol:PHF1 "AT3G52190" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005783 "endoplasmic
reticulum" evidence=IDA] [GO:0006817 "phosphate ion transport"
evidence=IMP] [GO:0006888 "ER to Golgi vesicle-mediated transport"
evidence=RCA;IMP] [GO:0016036 "cellular response to phosphate
starvation" evidence=IEP] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0006820 "anion transport" evidence=RCA]
[GO:0006862 "nucleotide transport" evidence=RCA] [GO:0006865 "amino
acid transport" evidence=RCA] [GO:0006944 "cellular membrane
fusion" evidence=RCA] [GO:0010363 "regulation of plant-type
hypersensitive response" evidence=RCA] [GO:0015696 "ammonium
transport" evidence=RCA] [GO:0015802 "basic amino acid transport"
evidence=RCA] [GO:0043069 "negative regulation of programmed cell
death" evidence=RCA] [GO:0043090 "amino acid import" evidence=RCA]
[GO:0043269 "regulation of ion transport" evidence=RCA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0005783 GO:GO:0016021 GO:GO:0005886 EMBL:CP002686
GenomeReviews:BA000014_GR Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 GO:GO:0005789 GO:GO:0015031 GO:GO:0006888
GO:GO:0016036 GO:GO:0006817 EMBL:AL049711 EMBL:AK117697
IPI:IPI00543117 PIR:T49098 RefSeq:NP_566961.1 UniGene:At.20633
ProteinModelPortal:Q8GYE0 SMR:Q8GYE0 PaxDb:Q8GYE0 PRIDE:Q8GYE0
EnsemblPlants:AT3G52190.1 GeneID:824384 KEGG:ath:AT3G52190
GeneFarm:3702 TAIR:At3g52190 eggNOG:KOG0771 HOGENOM:HOG000083448
InParanoid:Q8GYE0 KO:K14003 OMA:LRILEWP PhylomeDB:Q8GYE0
ProtClustDB:CLSN2917420 Genevestigator:Q8GYE0 GermOnline:AT3G52190
Uniprot:Q8GYE0
Length = 398
Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
Identities = 170/261 (65%), Positives = 209/261 (80%)
Query: 5 GTVTCGSWIKRPENVNLVVLGKSS--RASS--SPSVLEIFSFDPKTTSVYTSPLVTYVFD 60
G V CGSWI+RP+ VN V++ K+S R SS SP++L IFSFDP T S+ +SPL T+
Sbjct: 11 GHVVCGSWIRRPKKVNWVLIAKASKRRGSSVSSPALLNIFSFDPITASLSSSPLATHTLK 70
Query: 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF 120
+S+GDP+ ++V+P GD FVCST+ GGCKLFE+ GGAT I +LAK++ PLQ+AG QKC++F
Sbjct: 71 DSDGDPVAVSVHPGGDYFVCSTSKGGCKLFELVGGATGITILAKELLPLQNAGLQKCMAF 130
Query: 121 SVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI 180
S DGS+ A GGVDG LRIM WP+L +ILDEPKAHKS+ DMDFSLDSEFLATTSTDGSARI
Sbjct: 131 SFDGSKLAVGGVDGCLRIMEWPNLSVILDEPKAHKSIRDMDFSLDSEFLATTSTDGSARI 190
Query: 181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240
WK EDG + L R+ DE IELCRFSKDGTKPFLFC QRGD ++ VYDISTW K+G K
Sbjct: 191 WKAEDGFPLSTLERSGDENIELCRFSKDGTKPFLFCAAQRGDTPMVNVYDISTWKKLGFK 250
Query: 241 RLLRKPASVLSISLDGKYLAM 261
+L RK AS +++SLDGKY+A+
Sbjct: 251 KLSRKTASTMAVSLDGKYIAL 271
>TAIR|locus:2159697 [details] [associations]
symbol:AT5G50550 "AT5G50550" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 EMBL:CP002688
GenomeReviews:BA000015_GR Gene3D:2.130.10.10 SUPFAM:SSF50978
eggNOG:COG2319 EMBL:AB025619 KO:K14003 HOGENOM:HOG000070543
ProtClustDB:CLSN2683533 EMBL:BT029728 EMBL:AK221493 IPI:IPI00529177
RefSeq:NP_568738.1 RefSeq:NP_680414.1 UniGene:At.49156
ProteinModelPortal:Q9FGP3 SMR:Q9FGP3 STRING:Q9FGP3 PaxDb:Q9FGP3
PRIDE:Q9FGP3 EnsemblPlants:AT5G50550.1 EnsemblPlants:AT5G50650.1
GeneID:835123 GeneID:835135 KEGG:ath:AT5G50550 KEGG:ath:AT5G50650
TAIR:At5g50550 TAIR:At5g50650 InParanoid:Q9FGP3 OMA:ASSHEHY
PhylomeDB:Q9FGP3 ArrayExpress:Q9FGP3 Genevestigator:Q9FGP3
Uniprot:Q9FGP3
Length = 383
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 75/243 (30%), Positives = 115/243 (47%)
Query: 25 GKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84
G S P+V+ I D T S+ P+ V P +A++P +C+ N
Sbjct: 56 GGGEGRSGIPNVILICRVDLHTNSLSEQPIGRRVIGTDL--PYRMAIHPRQGGLICALPN 113
Query: 85 GGCKLFEVYGGATDINL--LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142
C+LF+ D N K + L+D G Q LSF+ DG+ A G DG LR+ WP
Sbjct: 114 S-CRLFDWENIIEDDNEEESEKVVKELKDVGQQLSLSFNQDGTVLATGAEDGTLRVFEWP 172
Query: 143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIEL 202
S++ +L+E K H SV + FS +FL + R+W A L++ DE
Sbjct: 173 SMKTLLNESKTHASVKSLTFSESGKFLVSLGAP-LCRVWDVNASAAIASLSKEKDEMFAS 231
Query: 203 CRFSKD--GTKP-FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPA-SVLSISLDGKY 258
CRFS D G++ ++ QRG + +D ++W + K + R + S ++S DGK
Sbjct: 232 CRFSVDNSGSEVLYVAANTQRGGSII--TWDTTSWRRRSSKLIKRNNSISAFNVSADGKL 289
Query: 259 LAM 261
LA+
Sbjct: 290 LAV 292
>TAIR|locus:2832497 [details] [associations]
symbol:AT5G50650 "AT5G50650" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 EMBL:CP002688
GenomeReviews:BA000015_GR Gene3D:2.130.10.10 SUPFAM:SSF50978
eggNOG:COG2319 EMBL:AB025619 KO:K14003 HOGENOM:HOG000070543
ProtClustDB:CLSN2683533 EMBL:BT029728 EMBL:AK221493 IPI:IPI00529177
RefSeq:NP_568738.1 RefSeq:NP_680414.1 UniGene:At.49156
ProteinModelPortal:Q9FGP3 SMR:Q9FGP3 STRING:Q9FGP3 PaxDb:Q9FGP3
PRIDE:Q9FGP3 EnsemblPlants:AT5G50550.1 EnsemblPlants:AT5G50650.1
GeneID:835123 GeneID:835135 KEGG:ath:AT5G50550 KEGG:ath:AT5G50650
TAIR:At5g50550 TAIR:At5g50650 InParanoid:Q9FGP3 OMA:ASSHEHY
PhylomeDB:Q9FGP3 ArrayExpress:Q9FGP3 Genevestigator:Q9FGP3
Uniprot:Q9FGP3
Length = 383
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 75/243 (30%), Positives = 115/243 (47%)
Query: 25 GKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84
G S P+V+ I D T S+ P+ V P +A++P +C+ N
Sbjct: 56 GGGEGRSGIPNVILICRVDLHTNSLSEQPIGRRVIGTDL--PYRMAIHPRQGGLICALPN 113
Query: 85 GGCKLFEVYGGATDINL--LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142
C+LF+ D N K + L+D G Q LSF+ DG+ A G DG LR+ WP
Sbjct: 114 S-CRLFDWENIIEDDNEEESEKVVKELKDVGQQLSLSFNQDGTVLATGAEDGTLRVFEWP 172
Query: 143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIEL 202
S++ +L+E K H SV + FS +FL + R+W A L++ DE
Sbjct: 173 SMKTLLNESKTHASVKSLTFSESGKFLVSLGAP-LCRVWDVNASAAIASLSKEKDEMFAS 231
Query: 203 CRFSKD--GTKP-FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPA-SVLSISLDGKY 258
CRFS D G++ ++ QRG + +D ++W + K + R + S ++S DGK
Sbjct: 232 CRFSVDNSGSEVLYVAANTQRGGSII--TWDTTSWRRRSSKLIKRNNSISAFNVSADGKL 289
Query: 259 LAM 261
LA+
Sbjct: 290 LAV 292
>TAIR|locus:2049582 [details] [associations]
symbol:STL2P "AT2G01470" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
[GO:0005774 "vacuolar membrane" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0006888 "ER to Golgi vesicle-mediated
transport" evidence=RCA;TAS] [GO:0043090 "amino acid import"
evidence=RCA] [GO:0030176 "integral to endoplasmic reticulum
membrane" evidence=IDA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0005886 GO:GO:0005794 GO:GO:0005774
EMBL:CP002685 GenomeReviews:CT485783_GR Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 GO:GO:0015031 GO:GO:0030176
GO:GO:0006888 EMBL:AC005560 KO:K14003 eggNOG:NOG309181 EMBL:M95796
EMBL:AY065198 EMBL:AY074332 EMBL:AY123030 IPI:IPI00534887
PIR:B84425 PIR:S28604 PIR:T48907 RefSeq:NP_178256.1 UniGene:At.323
ProteinModelPortal:Q39221 SMR:Q39221 STRING:Q39221 PaxDb:Q39221
PRIDE:Q39221 EnsemblPlants:AT2G01470.1 GeneID:814675
KEGG:ath:AT2G01470 GeneFarm:5183 TAIR:At2g01470
HOGENOM:HOG000070543 InParanoid:Q39221 OMA:WLPLAHI PhylomeDB:Q39221
ProtClustDB:CLSN2683533 Genevestigator:Q39221 GermOnline:AT2G01470
Uniprot:Q39221
Length = 393
Score = 256 (95.2 bits), Expect = 7.4e-22, P = 7.4e-22
Identities = 78/246 (31%), Positives = 113/246 (45%)
Query: 25 GKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84
G R+ S +V+ I D T S+ PL V P +AV+P +C+ N
Sbjct: 66 GGEGRSGIS-NVILICRVDLNTNSLSEQPLGRLVVGSDL--PYRMAVHPREGGLICALPN 122
Query: 85 GGCKLF--EVYGGATDINLLAKK---MPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139
CKLF E D N + + L+D G Q L+F+ +GS AAG DG LR+
Sbjct: 123 S-CKLFHWEDIMSRED-NQAGESEEVIKELRDVGQQLALAFNPEGSVLAAGAEDGTLRVF 180
Query: 140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSA-RIWKTEDGVAWTFLTRNSDE 198
WPS+ +L+E +AH SV + FS +FL S G R+W A L++ DE
Sbjct: 181 KWPSMNTLLNESQAHSSVKCLTFSESGQFLV--SLGGPVCRVWDVNASAAVASLSKEKDE 238
Query: 199 KIELCRFSKD--GTKP-FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD 255
CRFS D G + ++ +RG + D W + K + + S ++S D
Sbjct: 239 MFASCRFSVDSAGNEVLYIAANTERGGSIITC--DTKLWKRKWSKPIKKNSISAFNVSAD 296
Query: 256 GKYLAM 261
GK LA+
Sbjct: 297 GKLLAI 302
>MGI|MGI:1355326 [details] [associations]
symbol:Preb "prolactin regulatory element binding"
species:10090 "Mus musculus" [GO:0001077 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding
transcription factor activity involved in positive regulation of
transcription" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISO;ISS] [GO:0006810 "transport" evidence=IEA] [GO:0015031
"protein transport" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016192 "vesicle-mediated transport" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
MGI:MGI:1355326 GO:GO:0005783 GO:GO:0016021 GO:GO:0005634
GO:GO:0016192 Gene3D:2.130.10.10 PROSITE:PS00678 GO:GO:0003677
GO:GO:0015031 GO:GO:0003700 GO:GO:0006351 InterPro:IPR011047
SUPFAM:SSF50998 KO:K14003 CTD:10113 eggNOG:NOG309181
HOGENOM:HOG000045302 HOVERGEN:HBG002027 OMA:CQLLRFQ
OrthoDB:EOG4BZN2Z EMBL:AF150808 EMBL:AF193017 EMBL:BC017527
IPI:IPI00124980 RefSeq:NP_057912.2 UniGene:Mm.272414
ProteinModelPortal:Q9WUQ2 SMR:Q9WUQ2 IntAct:Q9WUQ2 STRING:Q9WUQ2
PhosphoSite:Q9WUQ2 PaxDb:Q9WUQ2 PRIDE:Q9WUQ2
Ensembl:ENSMUST00000074840 GeneID:50907 KEGG:mmu:50907
GeneTree:ENSGT00390000018031 InParanoid:Q9WUQ2 ChiTaRS:PREB
NextBio:307881 Bgee:Q9WUQ2 CleanEx:MM_PREB Genevestigator:Q9WUQ2
GermOnline:ENSMUSG00000045302 Uniprot:Q9WUQ2
Length = 417
Score = 131 (51.2 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 48/163 (29%), Positives = 74/163 (45%)
Query: 115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL-DMDFSLDSEFLATTS 173
QK + F+ D + A GG DGH+R+ PSL +L E KAH+ + D+ D + L T
Sbjct: 157 QKVVCFNHDNTLLATGGTDGHVRVWKVPSLEKVL-EFKAHEGEIGDLTLGPDGK-LVTVG 214
Query: 174 TDGSARIWKTEDGVA---WTF---LTRNSDEKIELCRFSK--DGTKPFLFCTVQRGDKAL 225
D A +W+ + V W + N+ + + CRF + D TVQ K L
Sbjct: 215 WDFKASVWQKDQLVTQLQWQENGPASSNTPYRYQACRFGQVPDQLGGLRLFTVQIPHKRL 274
Query: 226 -------LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261
L +D ST+ + + + S LS+S G +L +
Sbjct: 275 RQPPPCYLTAWDSSTFLPLRTRSCGHEVISCLSVSDSGTFLGL 317
>RGD|61929 [details] [associations]
symbol:Preb "prolactin regulatory element binding" species:10116
"Rattus norvegicus" [GO:0001077 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding transcription factor
activity involved in positive regulation of transcription"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA;ISO] [GO:0005789 "endoplasmic reticulum membrane"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0015031 "protein transport"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016192 "vesicle-mediated transport" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320 RGD:61929
GO:GO:0016021 GO:GO:0005634 GO:GO:0016192 Gene3D:2.130.10.10
PROSITE:PS00678 GO:GO:0005789 GO:GO:0003677 GO:GO:0015031
GO:GO:0001077 InterPro:IPR011047 SUPFAM:SSF50998 KO:K14003 CTD:10113
eggNOG:NOG309181 HOGENOM:HOG000045302 HOVERGEN:HBG002027
OrthoDB:EOG4BZN2Z EMBL:AF061817 EMBL:BC078936 IPI:IPI00553950
RefSeq:NP_001164179.1 UniGene:Rn.41899 ProteinModelPortal:Q9WTV0
STRING:Q9WTV0 PRIDE:Q9WTV0 GeneID:58842 KEGG:rno:58842
InParanoid:Q9WTV0 NextBio:611414 Genevestigator:Q9WTV0
GermOnline:ENSRNOG00000007141 Uniprot:Q9WTV0
Length = 417
Score = 129 (50.5 bits), Expect = 9.8e-06, P = 9.8e-06
Identities = 49/164 (29%), Positives = 77/164 (46%)
Query: 115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL-DMDFSLDSEFLATTS 173
QK + F+ D + A GG DGH+R+ PSL +L E KAH+ + D+ D + L T
Sbjct: 157 QKVVCFNHDNTLLATGGSDGHVRVWKVPSLEKVL-EFKAHEGEIGDLALGPDGK-LVTVG 214
Query: 174 TDGSARIWKTEDGVA---WTF---LTRNSDEKIELCRFSKDGTKPF---LFCTVQRGDKA 224
D A +W+ + V W + N+ + + CRF + +P LF TVQ K
Sbjct: 215 WDFKASVWQKDQLVTQLQWQENGPTSSNTPYRYQACRFGQVPDQPGGLRLF-TVQIPHKR 273
Query: 225 L-------LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261
L L +D ST+ + + + S L++S G +L +
Sbjct: 274 LRQPPPCYLTAWDSSTFLPLQTRSCGHEVISCLTVSESGTFLGL 317
>UNIPROTKB|E2RBH1 [details] [associations]
symbol:PREB "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005783 "endoplasmic reticulum" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0005783 Gene3D:2.130.10.10 InterPro:IPR011047 SUPFAM:SSF50998
KO:K14003 CTD:10113 OMA:CQLLRFQ GeneTree:ENSGT00390000018031
EMBL:AAEX03010803 RefSeq:XP_540122.2 ProteinModelPortal:E2RBH1
Ensembl:ENSCAFT00000007541 GeneID:483007 KEGG:cfa:483007
NextBio:20857469 Uniprot:E2RBH1
Length = 418
Score = 127 (49.8 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 57/186 (30%), Positives = 86/186 (46%)
Query: 99 INLLAKKMPPLQ-DAGP---QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH 154
I L + + +Q D P QK + F+ D + A GG DG++RI PSL +L E +AH
Sbjct: 138 IELSVENLKAVQTDFSPDPFQKVVCFNHDNTLLATGGTDGYVRIWKVPSLEKVL-EFRAH 196
Query: 155 KSVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVA---W-----TFLTRNSDEKIELCRF 205
+ ++ D +L + L T D A +W+ + V W TF N+ + + CRF
Sbjct: 197 EGEIE-DLALGPDGKLVTVGWDLKASVWQKDQLVTQLHWQENGPTF--SNTPYRYQACRF 253
Query: 206 SKDGTKPF---LFCTVQRGDKAL-------LAVYDISTWNKIGHKRLLRKPASVLSISLD 255
+P LF TVQ K L L +D ST+ + K + S LS+S
Sbjct: 254 GHVPDQPTRLRLF-TVQIPHKRLRQPPPCYLTAWDGSTFLPLRTKSCGHEVISCLSVSES 312
Query: 256 GKYLAM 261
G +L +
Sbjct: 313 GTFLGL 318
>GENEDB_PFALCIPARUM|PFL0970w [details] [associations]
symbol:PFL0970w "pre-mRNA splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0005681 EMBL:AE014188
KO:K12816 HOGENOM:HOG000214672 RefSeq:XP_001350600.1
ProteinModelPortal:Q8I5L1 IntAct:Q8I5L1 MINT:MINT-1599121
EnsemblProtists:PFL0970w:mRNA GeneID:811246 KEGG:pfa:PFL0970w
EuPathDB:PlasmoDB:PF3D7_1220100 ProtClustDB:CLSZ2433029
Uniprot:Q8I5L1
Length = 618
Score = 127 (49.8 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 40/137 (29%), Positives = 67/137 (48%)
Query: 50 YTSPLVT-YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKK-MP 107
Y P+V Y+ D S +++V+PS + F+C + N ++E G L +KK
Sbjct: 486 YGLPVVVKYISDASMFSITSVSVHPSNNFFLCQSMNNVITVYEATG---KFRLFSKKTFK 542
Query: 108 PLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV-LDMDFS-LD 165
+ G +S S DG +G +G L I +W + + KAHK+V +D +
Sbjct: 543 GHHNIGYSINVSCSNDGKYVISGDSNGGLFIWNWKKM-VNFKNIKAHKNVCIDCVWHPFK 601
Query: 166 SEFLATTSTDGSARIWK 182
+ LAT S DG+ ++W+
Sbjct: 602 TSMLATASWDGTIKLWE 618
>UNIPROTKB|Q8I5L1 [details] [associations]
symbol:PFL0970w "Pre-mRNA splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978 InterPro:IPR020472
PRINTS:PR00320 GO:GO:0005681 EMBL:AE014188 KO:K12816
HOGENOM:HOG000214672 RefSeq:XP_001350600.1
ProteinModelPortal:Q8I5L1 IntAct:Q8I5L1 MINT:MINT-1599121
EnsemblProtists:PFL0970w:mRNA GeneID:811246 KEGG:pfa:PFL0970w
EuPathDB:PlasmoDB:PF3D7_1220100 ProtClustDB:CLSZ2433029
Uniprot:Q8I5L1
Length = 618
Score = 127 (49.8 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 40/137 (29%), Positives = 67/137 (48%)
Query: 50 YTSPLVT-YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKK-MP 107
Y P+V Y+ D S +++V+PS + F+C + N ++E G L +KK
Sbjct: 486 YGLPVVVKYISDASMFSITSVSVHPSNNFFLCQSMNNVITVYEATG---KFRLFSKKTFK 542
Query: 108 PLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV-LDMDFS-LD 165
+ G +S S DG +G +G L I +W + + KAHK+V +D +
Sbjct: 543 GHHNIGYSINVSCSNDGKYVISGDSNGGLFIWNWKKM-VNFKNIKAHKNVCIDCVWHPFK 601
Query: 166 SEFLATTSTDGSARIWK 182
+ LAT S DG+ ++W+
Sbjct: 602 TSMLATASWDGTIKLWE 618
>ZFIN|ZDB-GENE-040426-916 [details] [associations]
symbol:smu1 "smu-1 suppressor of mec-8 and unc-52
homolog (C. elegans)" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR006594 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 PROSITE:PS50896 SMART:SM00320 SMART:SM00667
ZFIN:ZDB-GENE-040426-916 GO:GO:0005634 GO:GO:0005737
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
PROSITE:PS50897 InterPro:IPR006595 SMART:SM00668 CTD:55234
HOGENOM:HOG000264846 HOVERGEN:HBG079573 KO:K13111 OrthoDB:EOG49ZXP0
EMBL:BC045945 IPI:IPI00505889 RefSeq:NP_956493.1 UniGene:Dr.31728
ProteinModelPortal:Q7ZVA0 STRING:Q7ZVA0 PRIDE:Q7ZVA0 GeneID:393168
KEGG:dre:393168 InParanoid:Q7ZVA0 NextBio:20814238
ArrayExpress:Q7ZVA0 Uniprot:Q7ZVA0
Length = 513
Score = 126 (49.4 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 33/104 (31%), Positives = 51/104 (49%)
Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKS-------VLDMDFSLDSE 167
+C FS DG G VDG + + ++ + +I D + +A + VL M FS D+E
Sbjct: 218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMSFSRDTE 277
Query: 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211
LAT + DG ++WK + G R + + FSKD T+
Sbjct: 278 MLATGAQDGKIKVWKIQSGQCLRRYERAHSKGVTCLSFSKDSTQ 321
>TAIR|locus:2027749 [details] [associations]
symbol:SMU1 "AT1G73720" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=IMP] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR006594 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 PROSITE:PS50896 SMART:SM00320 SMART:SM00667
EMBL:CP002684 GO:GO:0005634 GO:GO:0008380 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 HSSP:P16649 GO:GO:0080008
PROSITE:PS50897 InterPro:IPR006595 SMART:SM00668 KO:K13111
OMA:NGHWDTV EMBL:AF462796 EMBL:AY102129 IPI:IPI00544131
RefSeq:NP_177513.2 UniGene:At.27865 ProteinModelPortal:Q8W117
SMR:Q8W117 IntAct:Q8W117 PaxDb:Q8W117 PRIDE:Q8W117
EnsemblPlants:AT1G73720.1 GeneID:843707 KEGG:ath:AT1G73720
TAIR:At1g73720 InParanoid:Q8W117 PhylomeDB:Q8W117
ProtClustDB:CLSN2690492 Genevestigator:Q8W117 Uniprot:Q8W117
Length = 511
Score = 124 (48.7 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 36/104 (34%), Positives = 54/104 (51%)
Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKS-------VLDMDFSLDSE 167
+C FS DG A+ VDG + + + S ++ D + +A +S VL +DFS DSE
Sbjct: 217 ECARFSPDGQFLASSSVDGFIEVWDYISGKLKKDLQYQADESFMMHDDPVLCIDFSRDSE 276
Query: 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211
LA+ S DG +IW+ GV +S L FS+DG++
Sbjct: 277 MLASGSQDGKIKIWRIRTGVCIRRFDAHSQGVTSLS-FSRDGSQ 319
>DICTYBASE|DDB_G0284621 [details] [associations]
symbol:pwp2 "periodic tryptophan protein"
species:44689 "Dictyostelium discoideum" [GO:0030515 "snoRNA
binding" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0005829 "cytosol" evidence=ISS] [GO:0005730 "nucleolus"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
dictyBase:DDB_G0284621 GO:GO:0005829 GO:GO:0005730
GenomeReviews:CM000153_GR Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 GO:GO:0030515 eggNOG:COG2319
InterPro:IPR011047 SUPFAM:SSF50998 GO:GO:0006364 HSSP:P16649
EMBL:AAFI02000070 KO:K14558 InterPro:IPR027145 InterPro:IPR007148
PANTHER:PTHR19858 Pfam:PF04003 RefSeq:XP_638435.1
ProteinModelPortal:Q54PE0 STRING:Q54PE0 EnsemblProtists:DDB0235358
GeneID:8624685 KEGG:ddi:DDB_G0284621 OMA:HEAPIAC
ProtClustDB:CLSZ2430232 Uniprot:Q54PE0
Length = 922
Score = 126 (49.4 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 40/126 (31%), Positives = 59/126 (46%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKS-VLDMDFSLDSEFLATTS 173
CL+ G AAG +D I W S+R + D H+S V ++ F + FLA+ S
Sbjct: 450 CLAVDPSGEIIAAGSLDS-FEIYVW-SVRTGRLTDILSGHQSPVCELAFDPINPFLASAS 507
Query: 174 TDGSARIWKT-EDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232
D S +IW ED + SD + C +S+DG K + C + +Y+ S
Sbjct: 508 WDKSCKIWNIFEDREIRESIQHTSD--VLTCAYSQDGKKFIVSCL-----DGTIQIYETS 560
Query: 233 TWNKIG 238
TW +IG
Sbjct: 561 TWGQIG 566
>UNIPROTKB|Q5ZME8 [details] [associations]
symbol:SMU1 "WD40 repeat-containing protein SMU1"
species:9031 "Gallus gallus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR006594 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 PROSITE:PS50896
SMART:SM00320 SMART:SM00667 GO:GO:0005634 GO:GO:0005737
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
PROSITE:PS50897 InterPro:IPR006595 SMART:SM00668
GeneTree:ENSGT00700000104461 CTD:55234 HOGENOM:HOG000264846
HOVERGEN:HBG079573 KO:K13111 OMA:NGHWDTV OrthoDB:EOG49ZXP0
EMBL:AJ719436 IPI:IPI00571757 RefSeq:NP_001007980.1
UniGene:Gga.5532 ProteinModelPortal:Q5ZME8 PRIDE:Q5ZME8
Ensembl:ENSGALT00000003135 GeneID:427377 KEGG:gga:427377
InParanoid:Q5ZME8 NextBio:20828644 Uniprot:Q5ZME8
Length = 513
Score = 122 (48.0 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 31/104 (29%), Positives = 51/104 (49%)
Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMD-------FSLDSE 167
+C FS DG G VDG + + ++ + +I D + +A + + MD FS D+E
Sbjct: 218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTE 277
Query: 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211
LAT + DG ++WK + G R + + FSKD ++
Sbjct: 278 MLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQ 321
>UNIPROTKB|Q2TBS9 [details] [associations]
symbol:SMU1 "WD40 repeat-containing protein SMU1"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR006594 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 PROSITE:PS50896
SMART:SM00320 SMART:SM00667 GO:GO:0005634 GO:GO:0005737
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
PROSITE:PS50897 InterPro:IPR006595 SMART:SM00668
GeneTree:ENSGT00700000104461 EMBL:BC109712 IPI:IPI00726295
RefSeq:NP_001033662.1 UniGene:Bt.25206 ProteinModelPortal:Q2TBS9
SMR:Q2TBS9 STRING:Q2TBS9 PRIDE:Q2TBS9 Ensembl:ENSBTAT00000020865
GeneID:540842 KEGG:bta:540842 CTD:55234 HOGENOM:HOG000264846
HOVERGEN:HBG079573 InParanoid:Q2TBS9 KO:K13111 OMA:NGHWDTV
OrthoDB:EOG49ZXP0 NextBio:20878868 Uniprot:Q2TBS9
Length = 513
Score = 122 (48.0 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 31/104 (29%), Positives = 51/104 (49%)
Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMD-------FSLDSE 167
+C FS DG G VDG + + ++ + +I D + +A + + MD FS D+E
Sbjct: 218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTE 277
Query: 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211
LAT + DG ++WK + G R + + FSKD ++
Sbjct: 278 MLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQ 321
>UNIPROTKB|Q2TAY7 [details] [associations]
symbol:SMU1 "WD40 repeat-containing protein SMU1"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR006594 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 PROSITE:PS50896
SMART:SM00320 SMART:SM00667 GO:GO:0005634 GO:GO:0005737
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
EMBL:AL162590 PROSITE:PS50897 InterPro:IPR006595 SMART:SM00668
CTD:55234 HOGENOM:HOG000264846 HOVERGEN:HBG079573 KO:K13111
OMA:NGHWDTV OrthoDB:EOG49ZXP0 EMBL:AK001667 EMBL:AK022032
EMBL:BC002876 EMBL:BC110654 IPI:IPI00305833 RefSeq:NP_060695.2
UniGene:Hs.655351 ProteinModelPortal:Q2TAY7 SMR:Q2TAY7
IntAct:Q2TAY7 MINT:MINT-256588 STRING:Q2TAY7 PhosphoSite:Q2TAY7
DMDM:109939732 PaxDb:Q2TAY7 PeptideAtlas:Q2TAY7 PRIDE:Q2TAY7
DNASU:55234 Ensembl:ENST00000397149 GeneID:55234 KEGG:hsa:55234
UCSC:uc003zsf.1 GeneCards:GC09M033041 HGNC:HGNC:18247 HPA:HPA019228
HPA:HPA019708 neXtProt:NX_Q2TAY7 PharmGKB:PA134903890
PhylomeDB:Q2TAY7 ChiTaRS:SMU1 GenomeRNAi:55234 NextBio:59249
ArrayExpress:Q2TAY7 Bgee:Q2TAY7 CleanEx:HS_SMU1
Genevestigator:Q2TAY7 GermOnline:ENSG00000122692 Uniprot:Q2TAY7
Length = 513
Score = 122 (48.0 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 31/104 (29%), Positives = 51/104 (49%)
Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMD-------FSLDSE 167
+C FS DG G VDG + + ++ + +I D + +A + + MD FS D+E
Sbjct: 218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTE 277
Query: 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211
LAT + DG ++WK + G R + + FSKD ++
Sbjct: 278 MLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQ 321
>MGI|MGI:1915546 [details] [associations]
symbol:Smu1 "smu-1 suppressor of mec-8 and unc-52 homolog
(C. elegans)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR006594 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 PROSITE:PS50896 SMART:SM00320 SMART:SM00667
MGI:MGI:1915546 GO:GO:0005634 GO:GO:0005737 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 PROSITE:PS50897
InterPro:IPR006595 SMART:SM00668 GeneTree:ENSGT00700000104461
CTD:55234 HOGENOM:HOG000264846 HOVERGEN:HBG079573 KO:K13111
OMA:NGHWDTV OrthoDB:EOG49ZXP0 EMBL:AB044414 EMBL:AK003493
EMBL:AK011140 EMBL:AK145982 EMBL:AK159635 EMBL:AK168813
EMBL:BC057446 IPI:IPI00331342 IPI:IPI00760034 RefSeq:NP_067510.3
UniGene:Mm.289929 ProteinModelPortal:Q3UKJ7 SMR:Q3UKJ7
STRING:Q3UKJ7 PhosphoSite:Q3UKJ7 PaxDb:Q3UKJ7 PRIDE:Q3UKJ7
Ensembl:ENSMUST00000030117 GeneID:74255 KEGG:mmu:74255
UCSC:uc008shv.2 InParanoid:Q3UKJ7 NextBio:340258 Bgee:Q3UKJ7
Genevestigator:Q3UKJ7 GermOnline:ENSMUSG00000028409 Uniprot:Q3UKJ7
Length = 513
Score = 122 (48.0 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 31/104 (29%), Positives = 51/104 (49%)
Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMD-------FSLDSE 167
+C FS DG G VDG + + ++ + +I D + +A + + MD FS D+E
Sbjct: 218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTE 277
Query: 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211
LAT + DG ++WK + G R + + FSKD ++
Sbjct: 278 MLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQ 321
>RGD|620694 [details] [associations]
symbol:Smu1 "smu-1 suppressor of mec-8 and unc-52 homolog (C.
elegans)" species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR006594
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
PROSITE:PS50896 SMART:SM00320 SMART:SM00667 RGD:620694
GO:GO:0005634 GO:GO:0005737 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 PROSITE:PS50897
InterPro:IPR006595 SMART:SM00668 CTD:55234 HOGENOM:HOG000264846
HOVERGEN:HBG079573 KO:K13111 OrthoDB:EOG49ZXP0 EMBL:AY029526
IPI:IPI00197468 RefSeq:NP_476543.1 UniGene:Rn.54978
ProteinModelPortal:Q99M63 STRING:Q99M63 PRIDE:Q99M63 GeneID:117541
KEGG:rno:117541 UCSC:RGD:620694 InParanoid:Q99M63 NextBio:620357
Genevestigator:Q99M63 GermOnline:ENSRNOG00000007671 Uniprot:Q99M63
Length = 513
Score = 122 (48.0 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 31/104 (29%), Positives = 51/104 (49%)
Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMD-------FSLDSE 167
+C FS DG G VDG + + ++ + +I D + +A + + MD FS D+E
Sbjct: 218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTE 277
Query: 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211
LAT + DG ++WK + G R + + FSKD ++
Sbjct: 278 MLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQ 321
>ZFIN|ZDB-GENE-050522-274 [details] [associations]
symbol:wdr13 "WD repeat domain 13" species:7955
"Danio rerio" [GO:0008150 "biological_process" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 ZFIN:ZDB-GENE-050522-274
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 EMBL:HQ388281 IPI:IPI00503912 UniGene:Dr.14419
ArrayExpress:F4ZZV4 Uniprot:F4ZZV4
Length = 485
Score = 121 (47.7 bits), Expect = 0.00010, P = 0.00010
Identities = 46/146 (31%), Positives = 66/146 (45%)
Query: 118 LSFSVDGSRF-AAGGVDGHLRIMHW----PSLRIILDEPKAHKS-VLDMDFSLDSEFLAT 171
L F+ D A +DG L IM P++++ L K H V D +SL ++ + +
Sbjct: 174 LQFANDDKHLLACCSLDGTLSIMTLSPPPPTVKVTL---KGHAGPVTDFAWSLSNDIIVS 230
Query: 172 TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231
TS DG+ RIW TEDG + ++ C F TV K L V +I
Sbjct: 231 TSKDGTLRIWNTEDGRCIREVVDPEGSELLCCTFQPMNNN----LTVVGNSKQHLQVVNI 286
Query: 232 STWNKI--GHKRLLRKPASVLSISLD 255
ST K+ G +L + VLS+S D
Sbjct: 287 STGKKVKGGSSKLTGR---VLSLSFD 309
>FB|FBgn0031779 [details] [associations]
symbol:CG9175 species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=IMP]
[GO:0005783 "endoplasmic reticulum" evidence=IDA] [GO:0000902 "cell
morphogenesis" evidence=IMP] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0005783 Gene3D:2.130.10.10 SUPFAM:SSF50978
GO:GO:0009306 GO:GO:0000902 eggNOG:NOG309181 EMBL:AY060647
ProteinModelPortal:Q95SQ7 SMR:Q95SQ7 PaxDb:Q95SQ7 PRIDE:Q95SQ7
FlyBase:FBgn0031779 InParanoid:Q95SQ7 OrthoDB:EOG4866V0
ArrayExpress:Q95SQ7 Bgee:Q95SQ7 Uniprot:Q95SQ7
Length = 445
Score = 121 (47.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 109 LQDAGP-QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDMDFSLDS 166
L+ A P Q+ + S +G A GG DG LR+ +P + + E AH K + D+DFS DS
Sbjct: 182 LKGAEPLQRVVRISGNGRLMATGGTDGKLRVWTFPQMTLAA-ELAAHSKEIDDLDFSPDS 240
Query: 167 EFLATTSTDGSARIWKTEDG 186
+ +A+ S D +W G
Sbjct: 241 KLIASISKDAQGLVWDLASG 260
Score = 37 (18.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 247 ASVLSISLDGK 257
A+VLSIS+D K
Sbjct: 398 AAVLSISVDNK 408
>ZFIN|ZDB-GENE-050419-255 [details] [associations]
symbol:daw1 "dynein assembly factor with WDR repeat
domains 1" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] [GO:0007368 "determination of
left/right symmetry" evidence=IMP] [GO:0070286 "axonemal dynein
complex assembly" evidence=IMP] [GO:0060271 "cilium morphogenesis"
evidence=IMP] [GO:0060285 "ciliary cell motility" evidence=IMP]
[GO:0042995 "cell projection" evidence=IEA] [GO:0005929 "cilium"
evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 ZFIN:ZDB-GENE-050419-255 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 GO:GO:0005929
eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0007368
GeneTree:ENSGT00700000104017 GO:GO:0060271 GO:GO:0070286
GO:GO:0060285 EMBL:BX908751 CTD:164781 HOGENOM:HOG000253909
HOVERGEN:HBG103651 EMBL:BC124403 EMBL:BC124455 IPI:IPI00504169
RefSeq:NP_001037817.1 UniGene:Dr.108235 ProteinModelPortal:Q1LV15
Ensembl:ENSDART00000142790 GeneID:556760 KEGG:dre:556760
InParanoid:Q05AM0 NextBio:20881649 ArrayExpress:Q1LV15 Bgee:Q1LV15
Uniprot:Q1LV15
Length = 415
Score = 119 (46.9 bits), Expect = 0.00014, P = 0.00014
Identities = 45/174 (25%), Positives = 76/174 (43%)
Query: 41 SFDPKTTSVYTSPL--VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD 98
SFD KT ++++ Y F + + +A NP + + KL++V G +
Sbjct: 154 SFD-KTCKLWSAETGKCFYTFRGHTAEIVCLAFNPQSTLVATGSMDTTAKLWDVESGE-E 211
Query: 99 INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW--PSLRIILDEPKAHKS 156
++ LA + L F+ G R G D H I+ W PS R + H+
Sbjct: 212 VSTLAGHFAEIIS------LCFNTTGDRLVTGSFD-HTAIL-WDVPSGRKV-HVLSGHRG 262
Query: 157 VLD-MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209
+ + F+ D +AT S D S ++W E G L ++DE +++C F+ G
Sbjct: 263 EISCVQFNWDCSLIATASLDKSCKVWDAEGGQCLATLLGHNDEVLDVC-FNYTG 315
>UNIPROTKB|F1SED4 [details] [associations]
symbol:PREB "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005783 "endoplasmic reticulum" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0005783 Gene3D:2.130.10.10 InterPro:IPR011047 SUPFAM:SSF50998
OMA:CQLLRFQ GeneTree:ENSGT00390000018031 EMBL:CU896571
Ensembl:ENSSSCT00000009358 Uniprot:F1SED4
Length = 415
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 49/166 (29%), Positives = 77/166 (46%)
Query: 115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL-DMDFSLDSEFLATTS 173
QK + F+ D + A GG DG++R+ P+L +L E +AH+ + D+ D + L T
Sbjct: 158 QKVVRFNHDATLLATGGTDGYVRVWKVPTLEKVL-EFRAHEGEIEDLAVGPDGK-LVTVG 215
Query: 174 TDGSARIWKTEDGVA---W-----TFLTRNSDEKIELCRFSKDGTKPF---LFCTVQRGD 222
D A +W+ + V W TF N+ + + CRF +P LF TVQ
Sbjct: 216 RDLKASVWQKDQLVTQLHWQENGPTF--SNTPYRYQACRFGPVPDQPAGLRLF-TVQIPH 272
Query: 223 KAL-------LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261
K L L +D ST+ + + + S LS+S G +L +
Sbjct: 273 KRLRQPPPCYLTAWDGSTFLPLRTRSCGHEVISCLSVSESGTFLGL 318
>UNIPROTKB|Q9HCU5 [details] [associations]
symbol:PREB "Prolactin regulatory element-binding protein"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005789 "endoplasmic reticulum
membrane" evidence=TAS] [GO:0006888 "ER to Golgi vesicle-mediated
transport" evidence=TAS] [GO:0006987 "activation of signaling
protein activity involved in unfolded protein response"
evidence=TAS] [GO:0016044 "cellular membrane organization"
evidence=TAS] [GO:0018279 "protein N-linked glycosylation via
asparagine" evidence=TAS] [GO:0030968 "endoplasmic reticulum
unfolded protein response" evidence=TAS] [GO:0043687
"post-translational protein modification" evidence=TAS] [GO:0044267
"cellular protein metabolic process" evidence=TAS] [GO:0048208
"COPII vesicle coating" evidence=TAS] [GO:0005783 "endoplasmic
reticulum" evidence=IDA] Reactome:REACT_11123 Reactome:REACT_17015
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0016021 GO:GO:0005634 Reactome:REACT_116125 EMBL:CH471053
GO:GO:0006987 GO:GO:0006355 Gene3D:2.130.10.10 PROSITE:PS00678
GO:GO:0005789 GO:GO:0003677 GO:GO:0015031 GO:GO:0006351
EMBL:AC013403 InterPro:IPR011047 SUPFAM:SSF50998 GO:GO:0043687
GO:GO:0018279 GO:GO:0048208 KO:K14003 EMBL:AF226684 EMBL:AF203687
EMBL:AF227166 EMBL:AK023064 EMBL:BC002765 EMBL:BC012890
EMBL:BC016472 EMBL:BC041032 IPI:IPI00033349 RefSeq:NP_037520.1
UniGene:Hs.279784 ProteinModelPortal:Q9HCU5 SMR:Q9HCU5
IntAct:Q9HCU5 STRING:Q9HCU5 PhosphoSite:Q9HCU5 DMDM:55977881
PaxDb:Q9HCU5 PeptideAtlas:Q9HCU5 PRIDE:Q9HCU5 DNASU:10113
Ensembl:ENST00000260643 Ensembl:ENST00000546336 GeneID:10113
KEGG:hsa:10113 UCSC:uc002rix.1 CTD:10113 GeneCards:GC02M027353
HGNC:HGNC:9356 HPA:HPA013582 HPA:HPA014133 MIM:606395
neXtProt:NX_Q9HCU5 PharmGKB:PA33727 eggNOG:NOG309181
HOGENOM:HOG000045302 HOVERGEN:HBG002027 InParanoid:Q9HCU5
OMA:CQLLRFQ OrthoDB:EOG4BZN2Z PhylomeDB:Q9HCU5 GenomeRNAi:10113
NextBio:38259 ArrayExpress:Q9HCU5 Bgee:Q9HCU5 CleanEx:HS_PREB
Genevestigator:Q9HCU5 GermOnline:ENSG00000138073 Uniprot:Q9HCU5
Length = 417
Score = 117 (46.2 bits), Expect = 0.00023, P = 0.00023
Identities = 49/166 (29%), Positives = 77/166 (46%)
Query: 115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEF-LATTS 173
QK + F+ D + A GG DG++R+ PSL +L E KAH+ ++ D +L + L T
Sbjct: 157 QKVVCFNHDNTLLATGGTDGYVRVWKVPSLEKVL-EFKAHEGEIE-DLALGPDGKLVTVG 214
Query: 174 TDGSARIWKTEDGVA---W-----TFLTRNSDEKIELCRFSKDGTKPF---LFCTVQRGD 222
D A +W+ + V W TF ++ + + CRF + +P LF TVQ
Sbjct: 215 RDLKASVWQKDQLVTQLHWQENGPTF--SSTPYRYQACRFGQVPDQPAGLRLF-TVQIPH 271
Query: 223 KAL-------LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261
K L L +D S + + K + S L +S G +L +
Sbjct: 272 KRLRQPPPCYLTAWDGSNFLPLRTKSCGHEVVSCLDVSESGTFLGL 317
>UNIPROTKB|E1BL12 [details] [associations]
symbol:PREB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005783 "endoplasmic reticulum" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0005783 Gene3D:2.130.10.10 InterPro:IPR011047 SUPFAM:SSF50998
KO:K14003 CTD:10113 OMA:CQLLRFQ GeneTree:ENSGT00390000018031
EMBL:DAAA02031599 IPI:IPI00699471 RefSeq:NP_001070343.2
UniGene:Bt.12009 ProteinModelPortal:E1BL12
Ensembl:ENSBTAT00000009307 GeneID:525256 KEGG:bta:525256
NextBio:20874125 Uniprot:E1BL12
Length = 418
Score = 117 (46.2 bits), Expect = 0.00023, P = 0.00023
Identities = 50/166 (30%), Positives = 78/166 (46%)
Query: 115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEF-LATTS 173
QK + F+ D + A GG DG +R+ P+L +L E KAH+ ++ D +L + L T
Sbjct: 158 QKVVCFNHDNTLLATGGTDGCVRVWKVPTLEKVL-EFKAHEGEIE-DLALGPDGKLVTVG 215
Query: 174 TDGSARIWKTEDGVA---W-----TFLTRNSDEKIELCRFSKDGTKPF---LFCTVQRGD 222
D A +W+ + V W TF N+ + + CRF + +P LF TVQ
Sbjct: 216 WDLKASVWQKDQLVTQLHWQENGPTF--SNTPYRYQACRFGQVPDQPAGLRLF-TVQIPH 272
Query: 223 KAL-------LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261
K L L +D ST+ + + + S LS+S G +L +
Sbjct: 273 KRLRQPPPCYLTAWDGSTFLPLRTRPCGHEVISCLSVSESGTFLGL 318
>ZFIN|ZDB-GENE-000616-4 [details] [associations]
symbol:apaf1 "apoptotic protease activating factor 1"
species:7955 "Danio rerio" [GO:0042981 "regulation of apoptotic
process" evidence=IEA] [GO:0006952 "defense response" evidence=IEA]
[GO:0043531 "ADP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008233
"peptidase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] InterPro:IPR017986 InterPro:IPR000767
InterPro:IPR001315 InterPro:IPR001680 InterPro:IPR002182
InterPro:IPR015943 Pfam:PF00400 Pfam:PF00619 Pfam:PF00931
PRINTS:PR00364 PROSITE:PS50082 PROSITE:PS50209 PROSITE:PS50294
SMART:SM00114 SMART:SM00320 ZFIN:ZDB-GENE-000616-4 GO:GO:0006952
GO:GO:0042981 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0043531
GO:GO:0005622 Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986
InterPro:IPR017251 PIRSF:PIRSF037646 GeneTree:ENSGT00700000104017
EMBL:CT868708 EMBL:CT025647 IPI:IPI00996819
Ensembl:ENSDART00000127261 Uniprot:E7F2V1
Length = 1264
Score = 122 (48.0 bits), Expect = 0.00027, P = 0.00027
Identities = 37/110 (33%), Positives = 53/110 (48%)
Query: 106 MPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS-VLDMDFSL 164
M P Q A C FS DGS+ A+ G LR+ S +L E +AH+ VL FS
Sbjct: 614 MHPHQGAVYYAC--FSKDGSKIASCGASKALRVFKSTSGEKLL-ELQAHEEDVLCCAFSP 670
Query: 165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214
D +AT ++D ++W E GV +E+I C+F+ G + L
Sbjct: 671 DDRHIATCASDKKVKLWNVERGVLIREFEVEHEEQINHCQFTNTGRRVLL 720
>UNIPROTKB|F1MUW4 [details] [associations]
symbol:APAF1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051402 "neuron apoptotic process" evidence=IEA]
[GO:0042802 "identical protein binding" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0016505 "apoptotic
protease activator activity" evidence=IEA] [GO:0008635 "activation
of cysteine-type endopeptidase activity involved in apoptotic
process by cytochrome c" evidence=IEA] [GO:0006309 "apoptotic DNA
fragmentation" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001843 "neural tube closure" evidence=IEA]
[GO:0043531 "ADP binding" evidence=IEA] [GO:0006952 "defense
response" evidence=IEA] InterPro:IPR017986 InterPro:IPR000767
InterPro:IPR001315 InterPro:IPR001680 InterPro:IPR002182
InterPro:IPR015943 Pfam:PF00400 Pfam:PF00619 Pfam:PF00931
PRINTS:PR00364 PROSITE:PS50082 PROSITE:PS50209 PROSITE:PS50294
SMART:SM00320 GO:GO:0005634 GO:GO:0005794 GO:GO:0006952
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0030900
GO:GO:0051402 GO:GO:0043531 GO:GO:0001843 GO:GO:0006309
GO:GO:0008635 Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986
GO:GO:0043293 GO:GO:0016505 OMA:KVCKNSA InterPro:IPR017251
PIRSF:PIRSF037646 GeneTree:ENSGT00700000104017 EMBL:DAAA02013647
EMBL:DAAA02013645 EMBL:DAAA02013646 IPI:IPI00689090
Ensembl:ENSBTAT00000028867 Uniprot:F1MUW4
Length = 1251
Score = 121 (47.7 bits), Expect = 0.00035, P = 0.00035
Identities = 37/110 (33%), Positives = 53/110 (48%)
Query: 100 NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS-VL 158
NL + P DA C FS DG R A+ G D L++ + +L E KAH+ VL
Sbjct: 607 NLSRLVVRPHTDAVYHAC--FSEDGQRIASCGADKTLQVFKAETGEKLL-EIKAHEDEVL 663
Query: 159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD 208
FS D +F+AT S D +IW + G +S E++ C F+ +
Sbjct: 664 CCAFSADDKFIATCSVDKKVKIWNSMTGELVRIYDEHS-EQVNCCHFTNN 712
>RGD|1310215 [details] [associations]
symbol:Taf5l "TAF5-like RNA polymerase II, p300/CBP-associated
factor (PCAF)-associated factor" species:10116 "Rattus norvegicus"
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0030914 "STAGA complex" evidence=ISO] [GO:0033276
"transcription factor TFTC complex" evidence=ISO] [GO:0043966
"histone H3 acetylation" evidence=ISO] [GO:0004402 "histone
acetyltransferase activity" evidence=ISO] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 RGD:1310215 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
EMBL:BC098861 IPI:IPI00359892 UniGene:Rn.23853
ProteinModelPortal:Q4G004 UCSC:RGD:1310215 InParanoid:Q4G004
ArrayExpress:Q4G004 Genevestigator:Q4G004 Uniprot:Q4G004
Length = 143
Score = 100 (40.3 bits), Expect = 0.00049, P = 0.00049
Identities = 25/70 (35%), Positives = 36/70 (51%)
Query: 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLAT 171
GP LSFS +G A+ G D L++ S + E + H S+ + FS DS +A+
Sbjct: 23 GPVLSLSFSPNGKYLASAGEDQRLKLWDLAS-GTLFKELRGHTDSITSLAFSPDSGLIAS 81
Query: 172 TSTDGSARIW 181
S D S R+W
Sbjct: 82 ASMDNSVRVW 91
>UNIPROTKB|I3LSG8 [details] [associations]
symbol:I3LSG8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043531 "ADP binding" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR002182 InterPro:IPR015943
Pfam:PF00400 Pfam:PF00931 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0043531
GeneTree:ENSGT00700000104017 ProteinModelPortal:I3LSG8
Ensembl:ENSSSCT00000028858 OMA:LRERVAC Uniprot:I3LSG8
Length = 994
Score = 118 (46.6 bits), Expect = 0.00058, P = 0.00058
Identities = 37/110 (33%), Positives = 52/110 (47%)
Query: 100 NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS-VL 158
NL + P DA C FS DG R A+ G D L++ + +L E KAH+ VL
Sbjct: 341 NLSRLVVRPHTDAVYHAC--FSEDGQRIASCGADKTLQVFKAETGEKLL-EIKAHEDEVL 397
Query: 159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD 208
FS D F+AT S D +IW + G +S E++ C F+ +
Sbjct: 398 CCAFSADDRFIATCSVDKKVKIWNSVTGELVQSYDEHS-EQVNCCHFTNN 446
>WB|WBGene00004895 [details] [associations]
symbol:smu-1 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IGI;IMP] [GO:0007638 "mechanosensory behavior"
evidence=IGI] [GO:0048666 "neuron development" evidence=IGI]
[GO:0002119 "nematode larval development" evidence=IGI] [GO:0040011
"locomotion" evidence=IGI] [GO:0048644 "muscle organ morphogenesis"
evidence=IGI] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR006594 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 PROSITE:PS50896 SMART:SM00320 SMART:SM00667
GO:GO:0009792 GO:GO:0002119 Gene3D:2.130.10.10 SUPFAM:SSF50978
GO:GO:0048644 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0040011
GO:GO:0048666 HSSP:P16649 GO:GO:0007638 PROSITE:PS50897
InterPro:IPR006595 SMART:SM00668 GeneTree:ENSGT00700000104461
KO:K13111 OMA:NGHWDTV EMBL:Z81490 EMBL:AF330595 PIR:T20276
RefSeq:NP_493279.1 UniGene:Cel.19360 ProteinModelPortal:G5EEG7
SMR:G5EEG7 IntAct:G5EEG7 EnsemblMetazoa:CC4.3 GeneID:173175
KEGG:cel:CELE_CC4.3 CTD:173175 WormBase:CC4.3 NextBio:878585
Uniprot:G5EEG7
Length = 510
Score = 114 (45.2 bits), Expect = 0.00069, P = 0.00069
Identities = 32/105 (30%), Positives = 53/105 (50%)
Query: 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMD-------FSLD 165
P+ + FS D + +G DG + + ++ + ++ D + +A +++ MD FS D
Sbjct: 217 PESAV-FSPDANYLVSGSKDGFIEVWNYMNGKLRKDLKYQAQDNLMMMDAAVRCISFSRD 275
Query: 166 SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210
SE LAT S DG ++WK E G R + + RFSKD +
Sbjct: 276 SEMLATGSIDGKIKVWKVETGDCLRRFDRAHTKGVCAVRFSKDNS 320
>UNIPROTKB|F1SQT5 [details] [associations]
symbol:APAF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043531 "ADP binding" evidence=IEA] [GO:0042981
"regulation of apoptotic process" evidence=IEA] [GO:0006952
"defense response" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR017986 InterPro:IPR000767
InterPro:IPR001315 InterPro:IPR001680 InterPro:IPR002182
InterPro:IPR015943 Pfam:PF00400 Pfam:PF00619 Pfam:PF00931
PRINTS:PR00364 PROSITE:PS50082 PROSITE:PS50209 PROSITE:PS50294
SMART:SM00114 SMART:SM00320 GO:GO:0006952 GO:GO:0042981
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0043531
GO:GO:0005622 Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986
CTD:317 KO:K02084 OMA:KVCKNSA InterPro:IPR017251 PIRSF:PIRSF037646
GeneTree:ENSGT00700000104017 EMBL:FP102239 EMBL:CU633605
RefSeq:XP_003481790.1 Ensembl:ENSSSCT00000000968
Ensembl:ENSSSCT00000033603 GeneID:100513283 KEGG:ssc:100513283
Uniprot:F1SQT5
Length = 1249
Score = 118 (46.6 bits), Expect = 0.00076, P = 0.00076
Identities = 37/110 (33%), Positives = 52/110 (47%)
Query: 100 NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS-VL 158
NL + P DA C FS DG R A+ G D L++ + +L E KAH+ VL
Sbjct: 605 NLSRLVVRPHTDAVYHAC--FSEDGQRIASCGADKTLQVFKAETGEKLL-EIKAHEDEVL 661
Query: 159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD 208
FS D F+AT S D +IW + G +S E++ C F+ +
Sbjct: 662 CCAFSADDRFIATCSVDKKVKIWNSVTGELVQSYDEHS-EQVNCCHFTNN 710
>UNIPROTKB|J9JHP3 [details] [associations]
symbol:APAF1 "Apoptotic protease-activating factor 1"
species:9615 "Canis lupus familiaris" [GO:0043531 "ADP binding"
evidence=IEA] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0006952 "defense response" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR017986
InterPro:IPR000767 InterPro:IPR001315 InterPro:IPR001680
InterPro:IPR002182 InterPro:IPR015943 Pfam:PF00400 Pfam:PF00619
Pfam:PF00931 PRINTS:PR00364 PROSITE:PS50082 PROSITE:PS50209
PROSITE:PS50294 SMART:SM00320 GO:GO:0006952 GO:GO:0042981
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0043531
GO:GO:0005622 Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986
GeneTree:ENSGT00700000104017 EMBL:AAEX03009966
Ensembl:ENSCAFT00000044849 Uniprot:J9JHP3
Length = 1215
Score = 124 (48.7 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 42/134 (31%), Positives = 62/134 (46%)
Query: 100 NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS-VL 158
NL + P DA C FS DG R A+ GVD L++ + +L E KAH+ VL
Sbjct: 613 NLSRLVVRPHTDAVYHAC--FSEDGQRIASCGVDKTLQVFKAETGEKLL-EIKAHEDEVL 669
Query: 159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218
FS D F+AT S D +IW + G +S E++ C F+ + +L
Sbjct: 670 CCAFSTDDRFIATCSVDKKVKIWNSMTGGLVHVYDEHS-EQVNCCHFTNNSH--YLLLAT 726
Query: 219 QRGDKALLAVYDIS 232
D L ++D++
Sbjct: 727 ASSD-CFLKLWDLN 739
Score = 36 (17.7 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 5/17 (29%), Positives = 13/17 (76%)
Query: 34 PSVLEIFSFDPKTTSVY 50
P+++++ +P+T+ VY
Sbjct: 569 PNIVQLGLCEPETSEVY 585
>UNIPROTKB|J9NS21 [details] [associations]
symbol:APAF1 "Apoptotic protease-activating factor 1"
species:9615 "Canis lupus familiaris" [GO:0043531 "ADP binding"
evidence=IEA] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0006952 "defense response" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR017986
InterPro:IPR000767 InterPro:IPR001315 InterPro:IPR001680
InterPro:IPR002182 InterPro:IPR015943 Pfam:PF00400 Pfam:PF00619
Pfam:PF00931 PRINTS:PR00364 PROSITE:PS50082 PROSITE:PS50209
PROSITE:PS50294 SMART:SM00320 GO:GO:0006952 GO:GO:0042981
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0043531
GO:GO:0005622 Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986
CTD:317 KO:K02084 InterPro:IPR017251 PIRSF:PIRSF037646
GeneTree:ENSGT00700000104017 EMBL:AAEX03009966
RefSeq:XP_003432082.1 ProteinModelPortal:J9NS21
Ensembl:ENSCAFT00000049144 GeneID:482620 KEGG:cfa:482620
Uniprot:J9NS21
Length = 1250
Score = 124 (48.7 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 42/134 (31%), Positives = 62/134 (46%)
Query: 100 NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS-VL 158
NL + P DA C FS DG R A+ GVD L++ + +L E KAH+ VL
Sbjct: 606 NLSRLVVRPHTDAVYHAC--FSEDGQRIASCGVDKTLQVFKAETGEKLL-EIKAHEDEVL 662
Query: 159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218
FS D F+AT S D +IW + G +S E++ C F+ + +L
Sbjct: 663 CCAFSTDDRFIATCSVDKKVKIWNSMTGGLVHVYDEHS-EQVNCCHFTNNSH--YLLLAT 719
Query: 219 QRGDKALLAVYDIS 232
D L ++D++
Sbjct: 720 ASSD-CFLKLWDLN 732
Score = 36 (17.7 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 5/17 (29%), Positives = 13/17 (76%)
Query: 34 PSVLEIFSFDPKTTSVY 50
P+++++ +P+T+ VY
Sbjct: 562 PNIVQLGLCEPETSEVY 578
>UNIPROTKB|E1BUU5 [details] [associations]
symbol:WDHD1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0033044 "regulation
of chromosome organization" evidence=IEA] [GO:0070063 "RNA
polymerase binding" evidence=IEA] [GO:0070829 "heterochromatin
maintenance" evidence=IEA] InterPro:IPR009071 InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 Pfam:PF00505 GO:GO:0005634
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00390000002030 InterPro:IPR022100
Pfam:PF12341 InterPro:IPR013979 Pfam:PF08662 OMA:MLKTGSS
EMBL:AADN02003980 IPI:IPI00578058 ProteinModelPortal:E1BUU5
Ensembl:ENSGALT00000019920 NextBio:20826014 Uniprot:E1BUU5
Length = 1123
Score = 117 (46.2 bits), Expect = 0.00087, P = 0.00087
Identities = 45/155 (29%), Positives = 74/155 (47%)
Query: 120 FSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK-----AHKS-VLDMDFSLDSEFLATTS 173
F+ DG++ AAG D ++++ + D K H + VL + F +LA+ S
Sbjct: 102 FNSDGAKIAAGSSDFMVKVVE------VADSSKQKTFRGHDAPVLSLSFDPMDIYLASAS 155
Query: 174 TDGSARIWKTEDGVA---WTFLTRNSD--EKIELCRFS-KDGTKPFLFCTVQRGDKALLA 227
DGS R+WK ED W L + +D +CR + + G+ L V DK ++
Sbjct: 156 CDGSVRVWKVEDQTCVTNWLLLQKCNDVINAKSICRLAWQPGSGKLLAIPV---DK-VVK 211
Query: 228 VYDISTW-NKIG-HKRLLRKPASVLSISLDGKYLA 260
+Y TW N++ + +P +V+ S G+YLA
Sbjct: 212 LYRRETWDNQVDLSDTSITQPLNVVVWSPCGQYLA 246
>UNIPROTKB|F1Q410 [details] [associations]
symbol:APAF1 "Apoptotic protease-activating factor 1"
species:9615 "Canis lupus familiaris" [GO:0043531 "ADP binding"
evidence=IEA] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0006952 "defense response" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR017986
InterPro:IPR000767 InterPro:IPR001315 InterPro:IPR001680
InterPro:IPR002182 InterPro:IPR015943 Pfam:PF00400 Pfam:PF00619
Pfam:PF00931 PRINTS:PR00364 PROSITE:PS50082 PROSITE:PS50209
PROSITE:PS50294 SMART:SM00320 GO:GO:0006952 GO:GO:0042981
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0043531
GO:GO:0005622 Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986
OMA:KVCKNSA GeneTree:ENSGT00700000104017 EMBL:AAEX03009966
Ensembl:ENSCAFT00000010576 Uniprot:F1Q410
Length = 1258
Score = 124 (48.7 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 42/134 (31%), Positives = 62/134 (46%)
Query: 100 NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS-VL 158
NL + P DA C FS DG R A+ GVD L++ + +L E KAH+ VL
Sbjct: 613 NLSRLVVRPHTDAVYHAC--FSEDGQRIASCGVDKTLQVFKAETGEKLL-EIKAHEDEVL 669
Query: 159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218
FS D F+AT S D +IW + G +S E++ C F+ + +L
Sbjct: 670 CCAFSTDDRFIATCSVDKKVKIWNSMTGGLVHVYDEHS-EQVNCCHFTNNSH--YLLLAT 726
Query: 219 QRGDKALLAVYDIS 232
D L ++D++
Sbjct: 727 ASSD-CFLKLWDLN 739
Score = 36 (17.7 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 5/17 (29%), Positives = 13/17 (76%)
Query: 34 PSVLEIFSFDPKTTSVY 50
P+++++ +P+T+ VY
Sbjct: 569 PNIVQLGLCEPETSEVY 585
>WB|WBGene00010496 [details] [associations]
symbol:sec-12 species:6239 "Caenorhabditis elegans"
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 Gene3D:2.130.10.10 SUPFAM:SSF50978
GO:GO:0040011 GO:GO:0000003 EMBL:Z75711 KO:K14003 eggNOG:NOG309181
GeneTree:ENSGT00390000018031 PIR:T23220 RefSeq:NP_492305.2
ProteinModelPortal:Q21115 SMR:Q21115 STRING:Q21115 PaxDb:Q21115
EnsemblMetazoa:K02B12.3.1 EnsemblMetazoa:K02B12.3.2 GeneID:172641
KEGG:cel:CELE_K02B12.3 UCSC:K02B12.3.1 CTD:172641 WormBase:K02B12.3
HOGENOM:HOG000019735 InParanoid:Q21115 OMA:QLHRVPY NextBio:876383
Uniprot:Q21115
Length = 425
Score = 112 (44.5 bits), Expect = 0.00089, P = 0.00089
Identities = 34/84 (40%), Positives = 46/84 (54%)
Query: 115 QKCLSF--SVDGSRFAAGGVDGHLRIMHWPSLRIILDE-----P----KAHKS-VLDMDF 162
QKC+ F S G FA GG DGH+RI W + + E P +AHK+ V D+DF
Sbjct: 145 QKCVRFDKSSRGKIFATGGADGHIRI--WNAQIVFRAENEDAQPILTIQAHKADVDDIDF 202
Query: 163 SLDSEFLATTSTDGSARIWKTEDG 186
S DS+ + + +G A IW T+ G
Sbjct: 203 SKDSKTIISVGAEG-AFIWSTQTG 225
>TAIR|locus:2140215 [details] [associations]
symbol:WDR5b "AT4G02730" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005834 "heterotrimeric
G-protein complex" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] [GO:0080008 "Cul4-RING ubiquitin ligase complex"
evidence=ISS] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 EMBL:CP002687 GenomeReviews:CT486007_GR
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
EMBL:AL161495 HSSP:P16649 GO:GO:0080008 EMBL:AC004044 KO:K14963
HOGENOM:HOG000091642 ProtClustDB:CLSN2684254 EMBL:AF439825
EMBL:AY088121 EMBL:AY125558 IPI:IPI00523608 PIR:G85034
RefSeq:NP_192182.1 UniGene:At.26627 ProteinModelPortal:Q9SY00
SMR:Q9SY00 EnsemblPlants:AT4G02730.1 GeneID:828189
KEGG:ath:AT4G02730 TAIR:At4g02730 InParanoid:Q9SY00 OMA:ETIRIWE
PhylomeDB:Q9SY00 ArrayExpress:Q9SY00 Genevestigator:Q9SY00
Uniprot:Q9SY00
Length = 333
Score = 110 (43.8 bits), Expect = 0.00099, P = 0.00099
Identities = 37/147 (25%), Positives = 67/147 (45%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS-VLDMDFSLDSEFLATTSTD 175
C++F+ + +G D +RI + + + KAH + + F+ D + + S D
Sbjct: 133 CVNFNPPSNLIVSGSFDETIRIWEVKTGKCVR-MIKAHSMPISSVHFNRDGSLIVSASHD 191
Query: 176 GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL-LAVYDISTW 234
GS +IW ++G L + + +FS +G K L T+ D L L+ Y +
Sbjct: 192 GSCKIWDAKEGTCLKTLIDDKSPAVSFAKFSPNG-KFILVATL---DSTLKLSNYATGKF 247
Query: 235 NKI--GHKRLLRKPASVLSISLDGKYL 259
K+ GH + S S++ +GKY+
Sbjct: 248 LKVYTGHTNKVFCITSAFSVT-NGKYI 273
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.410 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 261 261 0.00090 114 3 11 22 0.48 33
32 0.49 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 35
No. of states in DFA: 614 (65 KB)
Total size of DFA: 207 KB (2116 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.61u 0.16s 23.77t Elapsed: 00:00:01
Total cpu time: 23.61u 0.16s 23.77t Elapsed: 00:00:01
Start: Sat May 11 04:59:50 2013 End: Sat May 11 04:59:51 2013