BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024868
(261 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 69/181 (38%), Gaps = 25/181 (13%)
Query: 34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY 93
P+++++ +P+T+ VY + + EGD G E
Sbjct: 568 PNIVQLGLCEPETSEVYRQAKLQA---KQEGDT-------------------GRLYLEWI 605
Query: 94 GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153
T NL + P DA C FS DG R A+ G D L++ + +LD
Sbjct: 606 NKKTIKNLSRLVVRPHTDAVYHAC--FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAH 663
Query: 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213
VL FS D ++AT S D +IW + G +S E++ C F+
Sbjct: 664 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS-EQVNCCHFTNKSNHLL 722
Query: 214 L 214
L
Sbjct: 723 L 723
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 19/174 (10%)
Query: 14 KRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP 73
K ++ GK+ +SS SV++++++ YVF ++ + +
Sbjct: 1011 KAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD----------YVFLQAHQETVKDFRLL 1060
Query: 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD 133
+ + +G K++ V G + + + L A S D ++F++ D
Sbjct: 1061 QDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCA-------ISSDATKFSSTSAD 1113
Query: 134 GHLRIMHWPSLRIILDEPKAHKSVLDMD-FSLDSEFLATTSTDGSARIWKTEDG 186
+I + L L E K H + FSLD LAT +G RIW DG
Sbjct: 1114 KTAKIWSFDLLSP-LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1166
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 18/90 (20%)
Query: 156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDG-------VAWTFL-TRNSDEKIEL----C 203
SV FS D E LA+ S DG+ R+W V FL + + E +E+ C
Sbjct: 752 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCC 811
Query: 204 RFSKDGTKPFLFCTVQRGDKALLAVYDIST 233
+S DG K V +K LL +DI T
Sbjct: 812 SWSADGDKII----VAAKNKVLL--FDIHT 835
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 69/181 (38%), Gaps = 25/181 (13%)
Query: 34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY 93
P+++++ +P+T+ VY + + EGD G E
Sbjct: 561 PNIVQLGLCEPETSEVYRQAKLQA---KQEGDT-------------------GRLYLEWI 598
Query: 94 GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153
T NL + P DA C FS DG R A+ G D L++ + +LD
Sbjct: 599 NKKTIKNLSRLVVRPHTDAVYHAC--FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAH 656
Query: 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213
VL FS D ++AT S D +IW + G +S E++ C F+
Sbjct: 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS-EQVNCCHFTNKSNHLL 715
Query: 214 L 214
L
Sbjct: 716 L 716
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 19/174 (10%)
Query: 14 KRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP 73
K ++ GK+ +SS SV++++++ YVF ++ + +
Sbjct: 1004 KAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD----------YVFLQAHQETVKDFRLL 1053
Query: 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD 133
+ + +G K++ V G + + + L A S D ++F++ D
Sbjct: 1054 QDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCA-------ISSDATKFSSTSAD 1106
Query: 134 GHLRIMHWPSLRIILDEPKAHKSVLDMD-FSLDSEFLATTSTDGSARIWKTEDG 186
+I + L L E K H + FSLD LAT +G RIW DG
Sbjct: 1107 KTAKIWSFDLLSP-LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1159
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 18/90 (20%)
Query: 156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDG-------VAWTFL-TRNSDEKIEL----C 203
SV FS D E LA+ S DG+ R+W V FL + + E +E+ C
Sbjct: 745 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCC 804
Query: 204 RFSKDGTKPFLFCTVQRGDKALLAVYDIST 233
+S DG K V +K LL +DI T
Sbjct: 805 SWSADGDKII----VAAKNKVLL--FDIHT 828
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 100 NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVL 158
NL + P DA C FS DG R A+ G D L++ + +L E KAH+ VL
Sbjct: 611 NLSRLVVRPHTDAVYHAC--FSEDGQRIASCGADKTLQVFKAETGEKLL-EIKAHEDEVL 667
Query: 159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214
FS D F+AT S D +IW + G +S E++ C F+ L
Sbjct: 668 CCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHS-EQVNCCHFTNSSHHLLL 722
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 120 FSVDGSRFAAGGVDGHLRIMHWP-SLRIILDEPKAHKSVLDMD-FSLDSEFLATTSTDGS 177
S D ++F++ D +I W L + L E + H + FS+DS LAT +G
Sbjct: 1099 ISHDATKFSSTSADKTAKI--WSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGE 1156
Query: 178 ARIWKTEDG 186
RIW +G
Sbjct: 1157 IRIWNVSNG 1165
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG 124
D T+A +P T G +F V G + +L + L +++S DG
Sbjct: 124 DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL-------SIAYSPDG 176
Query: 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184
A+G +DG + I + +++ + + FS DS+ L T S DG +I+ +
Sbjct: 177 KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ 236
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 11/145 (7%)
Query: 120 FSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSAR 179
S DG +G DG LR+ + K VL + FS D+ + + S D + +
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----N 235
+W T +T + E + RFS + + P + V G L+ V++++ N
Sbjct: 131 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII---VSCGWDKLVKVWNLANCKLKTN 187
Query: 236 KIGHKRLLRKPASVLSISLDGKYLA 260
IGH L + +++S DG A
Sbjct: 188 HIGHTGYL----NTVTVSPDGSLCA 208
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 11/145 (7%)
Query: 120 FSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSAR 179
S DG +G DG LR+ + K VL + FS D+ + + S D + +
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----N 235
+W T +T + E + RFS + + P + V G L+ V++++ N
Sbjct: 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII---VSCGWDKLVKVWNLANCKLKTN 210
Query: 236 KIGHKRLLRKPASVLSISLDGKYLA 260
IGH L + +++S DG A
Sbjct: 211 HIGHTGYL----NTVTVSPDGSLCA 231
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209
RIW T G L + + + +FS +G
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG 210
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 16/188 (8%)
Query: 24 LGKSSRASSSPSVLEIFSFDPKTTSVY--TSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81
LG S A SS S L + + D KT ++ +S NP + V
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 131
Query: 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141
+ + ++++V G K +P D P + F+ DGS + DG RI
Sbjct: 132 SFDESVRIWDVKTGK-----CLKTLPAHSD--PVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 142 PS---LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE 198
S L+ ++D+ S + FS + +++ + D + ++W G T + +E
Sbjct: 185 ASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 242
Query: 199 KIELCRFS 206
K C F+
Sbjct: 243 K--YCIFA 248
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 134 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209
RIW T G L + + + +FS +G
Sbjct: 194 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG 226
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 16/188 (8%)
Query: 24 LGKSSRASSSPSVLEIFSFDPKTTSVY--TSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81
LG S A SS S L + + D KT ++ +S NP + V
Sbjct: 88 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 147
Query: 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141
+ + ++++V G K +P D P + F+ DGS + DG RI
Sbjct: 148 SFDESVRIWDVKTGK-----CLKTLPAHSD--PVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 142 PS---LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE 198
S L+ ++D+ S + FS + +++ + D + ++W G T + +E
Sbjct: 201 ASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 258
Query: 199 KIELCRFS 206
K C F+
Sbjct: 259 K--YCIFA 264
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209
RIW T G L + + + +FS +G
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG 210
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 16/188 (8%)
Query: 24 LGKSSRASSSPSVLEIFSFDPKTTSVY--TSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81
LG S A SS S L + + D KT ++ +S NP + V
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 131
Query: 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141
+ + ++++V G K +P D P + F+ DGS + DG RI
Sbjct: 132 SFDESVRIWDVKTGK-----CLKTLPAHSD--PVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 142 PS---LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE 198
S L+ ++D+ S + FS + +++ + D + ++W G T + +E
Sbjct: 185 ASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 242
Query: 199 KIELCRFS 206
K C F+
Sbjct: 243 K--YCIFA 248
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 136 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 195
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209
RIW T G L + + + +FS +G
Sbjct: 196 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG 228
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 16/188 (8%)
Query: 24 LGKSSRASSSPSVLEIFSFDPKTTSVY--TSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81
LG S A SS S L + + D KT ++ +S NP + V
Sbjct: 90 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 149
Query: 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141
+ + ++++V G K +P D P + F+ DGS + DG RI
Sbjct: 150 SFDESVRIWDVKTGK-----CLKTLPAHSD--PVSAVHFNRDGSLIVSSSYDGLCRIWDT 202
Query: 142 PS---LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE 198
S L+ ++D+ S + FS + +++ + D + ++W G T + +E
Sbjct: 203 ASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 260
Query: 199 KIELCRFS 206
K C F+
Sbjct: 261 K--YCIFA 266
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 117 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 176
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209
RIW T G L + + + +FS +G
Sbjct: 177 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG 209
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 16/188 (8%)
Query: 24 LGKSSRASSSPSVLEIFSFDPKTTSVY--TSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81
LG S A SS S L + + D KT ++ +S NP + V
Sbjct: 71 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 130
Query: 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141
+ + ++++V G K +P D P + F+ DGS + DG RI
Sbjct: 131 SFDESVRIWDVKTGK-----CLKTLPAHSD--PVSAVHFNRDGSLIVSSSYDGLCRIWDT 183
Query: 142 PS---LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE 198
S L+ ++D+ S + FS + +++ + D + ++W G T + +E
Sbjct: 184 ASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 241
Query: 199 KIELCRFS 206
K C F+
Sbjct: 242 K--YCIFA 247
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 113 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 172
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209
RIW T G L + + + +FS +G
Sbjct: 173 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG 205
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 16/188 (8%)
Query: 24 LGKSSRASSSPSVLEIFSFDPKTTSVY--TSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81
LG S A SS S L + + D KT ++ +S NP + V
Sbjct: 67 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 126
Query: 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141
+ + ++++V G K +P D P + F+ DGS + DG RI
Sbjct: 127 SFDESVRIWDVKTGK-----CLKTLPAHSD--PVSAVHFNRDGSLIVSSSYDGLCRIWDT 179
Query: 142 PS---LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE 198
S L+ ++D+ S + FS + +++ + D + ++W G T + +E
Sbjct: 180 ASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 237
Query: 199 KIELCRFS 206
K C F+
Sbjct: 238 K--YCIFA 243
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209
RIW T G L + + + +FS +G
Sbjct: 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG 204
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 16/188 (8%)
Query: 24 LGKSSRASSSPSVLEIFSFDPKTTSVY--TSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81
LG S A SS S L + + D KT ++ +S NP + V
Sbjct: 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 125
Query: 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141
+ + ++++V G K +P D P + F+ DGS + DG RI
Sbjct: 126 SFDESVRIWDVKTGK-----CLKTLPAHSD--PVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 142 PS---LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE 198
S L+ ++D+ S + FS + +++ + D + ++W G T + +E
Sbjct: 179 ASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 236
Query: 199 KIELCRFS 206
K C F+
Sbjct: 237 K--YCIFA 242
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 111 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 170
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209
RIW T G L + + + +FS +G
Sbjct: 171 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG 203
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 16/188 (8%)
Query: 24 LGKSSRASSSPSVLEIFSFDPKTTSVY--TSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81
LG S A SS S L + + D KT ++ +S NP + V
Sbjct: 65 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 124
Query: 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141
+ + ++++V G K +P D P + F+ DGS + DG RI
Sbjct: 125 SFDESVRIWDVKTGK-----CLKTLPAHSD--PVSAVHFNRDGSLIVSSSYDGLCRIWDT 177
Query: 142 PS---LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE 198
S L+ ++D+ S + FS + +++ + D + ++W G T + +E
Sbjct: 178 ASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 235
Query: 199 KIELCRFS 206
K C F+
Sbjct: 236 K--YCIFA 241
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209
RIW T G L + + + +FS +G
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG 210
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 16/188 (8%)
Query: 24 LGKSSRASSSPSVLEIFSFDPKTTSVY--TSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81
LG S A SS S L + + D KT ++ +S NP + V
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 131
Query: 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141
+ + ++++V G K +P D P + F+ DGS + DG RI
Sbjct: 132 SFDESVRIWDVKTGK-----CLKTLPAHSD--PVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 142 PS---LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE 198
S L+ ++D+ S + FS + +++ + D + ++W G T + +E
Sbjct: 185 ASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 242
Query: 199 KIELCRFS 206
K C F+
Sbjct: 243 K--YCIFA 248
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 108 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 167
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209
RIW T G L + + + +FS +G
Sbjct: 168 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG 200
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 16/188 (8%)
Query: 24 LGKSSRASSSPSVLEIFSFDPKTTSVY--TSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81
LG S A SS S L + + D KT ++ +S NP + V
Sbjct: 62 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 121
Query: 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141
+ + ++++V G K +P D P + F+ DGS + DG RI
Sbjct: 122 SFDESVRIWDVKTGK-----CLKTLPAHSD--PVSAVHFNRDGSLIVSSSYDGLCRIWDT 174
Query: 142 PS---LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE 198
S L+ ++D+ S + FS + +++ + D + ++W G T + +E
Sbjct: 175 ASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 232
Query: 199 KIELCRFS 206
K C F+
Sbjct: 233 K--YCIFA 238
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209
RIW T G L + + + +FS +G
Sbjct: 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG 204
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 16/188 (8%)
Query: 24 LGKSSRASSSPSVLEIFSFDPKTTSVY--TSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81
LG S A SS S L + + D KT ++ +S NP + V
Sbjct: 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 125
Query: 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141
+ + ++++V G K +P D P + F+ DGS + DG RI
Sbjct: 126 SFDESVRIWDVKTGK-----CLKTLPAHSD--PVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 142 PS---LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE 198
S L+ ++D+ S + FS + +++ + D + ++W G T + +E
Sbjct: 179 ASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 236
Query: 199 KIELCRFS 206
K C F+
Sbjct: 237 K--YCIFA 242
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 129 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 188
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209
RIW T G L + + + +FS +G
Sbjct: 189 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG 221
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 16/188 (8%)
Query: 24 LGKSSRASSSPSVLEIFSFDPKTTSVY--TSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81
LG S A SS S L + + D KT ++ +S NP + V
Sbjct: 83 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 142
Query: 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141
+ + ++++V G K +P D P + F+ DGS + DG RI
Sbjct: 143 SFDESVRIWDVKTGK-----CLKTLPAHSD--PVSAVHFNRDGSLIVSSSYDGLCRIWDT 195
Query: 142 PS---LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE 198
S L+ ++D+ S + FS + +++ + D + ++W G T + +E
Sbjct: 196 ASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 253
Query: 199 KIELCRFS 206
K C F+
Sbjct: 254 K--YCIFA 259
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209
RIW T G L + + + +FS +G
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG 207
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 16/188 (8%)
Query: 24 LGKSSRASSSPSVLEIFSFDPKTTSVY--TSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81
LG S A SS S L + + D KT ++ +S NP + V
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141
+ + ++++V G K +P D P + F+ DGS + DG RI
Sbjct: 129 SFDESVRIWDVKTGK-----CLKTLPAHSD--PVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 142 PS---LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE 198
S L+ ++D+ S + FS + +++ + D + ++W G T + +E
Sbjct: 182 ASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 239
Query: 199 KIELCRFS 206
K C F+
Sbjct: 240 K--YCIFA 245
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209
RIW T G L + + + +FS +G
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG 207
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 16/188 (8%)
Query: 24 LGKSSRASSSPSVLEIFSFDPKTTSVY--TSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81
LG S A SS S L + + D KT ++ +S NP + V
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141
+ + ++++V G K +P D P + F+ DGS + DG RI
Sbjct: 129 SFDESVRIWDVKTGKC-----LKTLPAHSD--PVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 142 PS---LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE 198
S L+ ++D+ S + FS + +++ + D + ++W G T + +E
Sbjct: 182 ASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 239
Query: 199 KIELCRFS 206
K C F+
Sbjct: 240 K--YCIFA 245
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209
RIW T G L + + + +FS +G
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG 207
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 16/188 (8%)
Query: 24 LGKSSRASSSPSVLEIFSFDPKTTSVY--TSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81
LG S A SS S L + + D KT ++ +S NP + V
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141
+ + ++++V G K +P D P + F+ DGS + DG RI
Sbjct: 129 SFDESVRIWDVKTGK-----CLKTLPAHSD--PVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 142 PS---LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE 198
S L+ ++D+ S + FS + +++ + D + ++W G T + +E
Sbjct: 182 ASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 239
Query: 199 KIELCRFS 206
K C F+
Sbjct: 240 K--YCIFA 245
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 39/93 (41%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + P V + F+ D + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209
RIW T G L + + + +FS +G
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG 207
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 76/188 (40%), Gaps = 16/188 (8%)
Query: 24 LGKSSRASSSPSVLEIFSFDPKTTSVY--TSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81
LG S A SS S L + + D KT ++ +S NP + V
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141
+ + ++++V G + K +P D P + F+ DGS + DG RI
Sbjct: 129 SFDESVRIWDVKTG-----MCLKTLPAHSD--PVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 142 PS---LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE 198
S L+ ++D+ S + FS + +++ + D + ++W G T + +E
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 239
Query: 199 KIELCRFS 206
K C F+
Sbjct: 240 K--YCIFA 245
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 39/93 (41%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + P V + F+ D + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209
RIW T G L + + + +FS +G
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG 207
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 16/188 (8%)
Query: 24 LGKSSRASSSPSVLEIFSFDPKTTSVY--TSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81
LG S A SS S L + + D KT ++ +S NP + V
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141
+ + ++++V G + K +P D P + F+ DGS + DG RI
Sbjct: 129 SFDESVRIWDVKTG-----MCLKTLPAHSD--PVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 142 PS---LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE 198
S L+ ++D+ S + FS + +++ + D ++W G T + +E
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVK--FSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNE 239
Query: 199 KIELCRFS 206
K C F+
Sbjct: 240 K--YCIFA 245
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 8/134 (5%)
Query: 57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK 116
Y F D +++A +P V + +++ V G ++ L++
Sbjct: 103 YKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGEC--MHTLSRGA----HTDWVS 156
Query: 117 CLSFS--VDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST 174
C+ FS +D +GG D +++ + R++ D V + S D A++
Sbjct: 157 CVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDK 216
Query: 175 DGSARIWKTEDGVA 188
DG AR+W G A
Sbjct: 217 DGVARLWDLTKGEA 230
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
Query: 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214
K VL + FS D+ + + D + R+W + T + + RFS P +
Sbjct: 110 KDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVI 169
Query: 215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260
V G L+ V+D++T + + + +++S DG A
Sbjct: 170 ---VSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCA 212
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%)
Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD 175
+ + FS DG A G D +RI + +I++ + + +D+ + L + S D
Sbjct: 127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 186
Query: 176 GSARIWKTEDG 186
+ RIW G
Sbjct: 187 RTVRIWDLRTG 197
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141
GP ++ S G+ +A+GG DG +R+ H+
Sbjct: 316 GPLNTVAISPQGTSYASGGEDGFIRLHHF 344
>pdb|3EK3|A Chain A, Crystal Structure Of Nitroreductase With Bound Fmn
(yp_211706.1) From Bacteroides Fragilis Nctc 9343 At
1.70 A Resolution
Length = 190
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 11/64 (17%)
Query: 133 DGHLR----------IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK 182
D HLR H P+L I+ +EPK + D ++++ FLA TS G A W
Sbjct: 76 DKHLRERGHSETYCCYYHAPTLVIVSNEPKQWWAGXDCACAIENXFLAATSL-GIASCWI 134
Query: 183 TEDG 186
+ G
Sbjct: 135 NQLG 138
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 118 LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGS 177
L F+ G F + G D L P I + K SVL D S+D +++ T S D
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIF-QSKESSSVLSCDISVDDKYIVTGSGDKK 329
Query: 178 ARIWK 182
A +++
Sbjct: 330 ATVYE 334
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 24/137 (17%)
Query: 59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLF--------EVYGGATDINLLAKKMPPLQ 110
+ EGD ++ P G F + +G C+LF +VY D N ++P +
Sbjct: 245 YHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN--DNELPIVT 302
Query: 111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL--RIILD---EPKAHKSVLD-MDFSL 164
++FS+ G AG +G + W +L ++L+ +H+ + + S
Sbjct: 303 S------VAFSISGRLLFAGYSNGDCYV--WDTLLAEMVLNLGTLQNSHEGRISCLGLSS 354
Query: 165 DSEFLATTSTDGSARIW 181
D L T S D + +IW
Sbjct: 355 DGSALCTGSWDKNLKIW 371
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA--GPQKCLSFSVDGS 125
++A + SG +NG C +++ +NL LQ++ G CL S DGS
Sbjct: 303 SVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL-----GTLQNSHEGRISCLGLSSDGS 357
Query: 126 RFAAGGVDGHLRIMHWPSLRIIL 148
G D +L+I + R I+
Sbjct: 358 ALCTGSWDKNLKIWAFSGHRKIV 380
>pdb|1T9O|A Chain A, Crystal Structure Of V44g Cp Rubredoxin
pdb|1T9O|B Chain B, Crystal Structure Of V44g Cp Rubredoxin
pdb|1T9O|C Chain C, Crystal Structure Of V44g Cp Rubredoxin
Length = 54
Score = 29.3 bits (64), Expect = 2.3, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 50 YTSPLVTYVFDESEGDPMTIAVNPSG------DDFVCSTTNGGCKLFE 91
YT + Y+++ +GDP VNP DD+VC GG FE
Sbjct: 4 YTCTVCGYIYNPEDGDPDN-GVNPGTDFKDIPDDWVCPLCGGGKDQFE 50
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 120 FSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSAR 179
S DG +G DG LR+ + K VL + FSLD+ + + S D + +
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 497
Query: 180 IWKTEDGVAWTFLTRNSDEK--IELCRFSKDGTKP 212
+W T +T + + RFS + +P
Sbjct: 498 LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532
>pdb|3R9C|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Cyp164a2 With
Econazole Bound
pdb|3R9B|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Cyp164a2 In
Ligand Free State
pdb|3R9B|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Cyp164a2 In
Ligand Free State
pdb|3R9B|C Chain C, Crystal Structure Of Mycobacterium Smegmatis Cyp164a2 In
Ligand Free State
Length = 418
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA 128
+AV SGD C L + G T +NL+A + P + + + DGSR +
Sbjct: 232 VAVEESGDQLTEDEIIATCNLLLIAGHETTVNLIANAALAMLRT-PGQWAALAADGSRAS 290
Query: 129 A 129
A
Sbjct: 291 A 291
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 13/145 (8%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
CL + D + +G D ++I +L SVL + + D + T S+D
Sbjct: 138 CLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDS 193
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
+ R+W G L + + + L RF+ + C+ R +AV+D+++
Sbjct: 194 TVRVWDVNTGEMLNTLIHHCEAVLHL-RFN---NGMMVTCSKDRS----IAVWDMASPTD 245
Query: 237 IGHKRLLR-KPASVLSISLDGKYLA 260
I +R+L A+V + D KY+
Sbjct: 246 ITLRRVLVGHRAAVNVVDFDDKYIV 270
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 168 FLATTSTDGSARIW--KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225
FLAT S D + +IW + G A + + FS DG + L T Q+ +
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR--LLTTDQKSE--- 319
Query: 226 LAVYDISTWN 235
+ VY S W+
Sbjct: 320 IRVYSASQWD 329
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 168 FLATTSTDGSARIW--KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225
FLAT S D + +IW + G A + + FS DG + L T Q+ +
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR--LLTTDQKSE--- 319
Query: 226 LAVYDISTWN 235
+ VY S W+
Sbjct: 320 IRVYSASQWD 329
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 168 FLATTSTDGSARIW--KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225
FLAT S D + +IW + G A + + FS DG + L T Q+ +
Sbjct: 266 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR--LLTTDQKSE--- 320
Query: 226 LAVYDISTWN 235
+ VY S W+
Sbjct: 321 IRVYSASQWD 330
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEV 92
F+ E D ++ PSGD F + + C+L+++
Sbjct: 235 AFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269
>pdb|1C09|A Chain A, Rubredoxin V44a Cp
pdb|1C09|B Chain B, Rubredoxin V44a Cp
pdb|1C09|C Chain C, Rubredoxin V44a Cp
Length = 54
Score = 27.3 bits (59), Expect = 9.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 50 YTSPLVTYVFDESEGDPMTIAVNPSG------DDFVCSTTNGGCKLFE 91
YT + Y+++ +GDP VNP DD+VC G FE
Sbjct: 4 YTCTVCGYIYNPEDGDPDN-GVNPGTDFKDIPDDWVCPLCGAGKDQFE 50
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS-VLDMDFSLDSEFLATTST 174
+ ++FS DG A+ D +++ W +L H S V + FS D + +A+ S+
Sbjct: 512 RGVAFSPDGQTIASASDDKTVKL--WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASS 569
Query: 175 DGSARIWK 182
D + ++W
Sbjct: 570 DKTVKLWN 577
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,556,338
Number of Sequences: 62578
Number of extensions: 358679
Number of successful extensions: 990
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 873
Number of HSP's gapped (non-prelim): 101
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)