Query 024868
Match_columns 261
No_of_seqs 495 out of 1561
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 08:01:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024868.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024868hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 4.8E-42 1E-46 252.1 20.5 229 4-261 115-468 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 2E-41 4.3E-46 251.4 17.1 231 4-261 217-447 (459)
3 KOG0272 U4/U6 small nuclear ri 100.0 2.9E-41 6.2E-46 250.5 17.8 229 3-261 174-405 (459)
4 KOG0263 Transcription initiati 100.0 4E-38 8.7E-43 250.0 20.1 234 6-261 380-636 (707)
5 KOG0286 G-protein beta subunit 100.0 3.9E-36 8.5E-41 213.9 25.2 234 4-261 97-332 (343)
6 KOG0286 G-protein beta subunit 100.0 1.2E-35 2.5E-40 211.5 26.1 232 4-260 55-289 (343)
7 KOG0279 G protein beta subunit 100.0 3.7E-35 8E-40 207.6 24.5 232 4-260 15-249 (315)
8 KOG0273 Beta-transducin family 100.0 1.1E-35 2.3E-40 223.9 22.6 231 5-260 236-509 (524)
9 KOG0263 Transcription initiati 100.0 1.3E-35 2.7E-40 235.9 23.0 228 3-260 450-701 (707)
10 KOG0279 G protein beta subunit 100.0 7.8E-35 1.7E-39 206.0 23.4 226 4-260 63-299 (315)
11 KOG0315 G-protein beta subunit 100.0 2.8E-34 6.1E-39 200.3 23.8 227 5-261 41-275 (311)
12 KOG0273 Beta-transducin family 100.0 5.3E-35 1.1E-39 220.2 21.3 242 3-261 177-469 (524)
13 KOG0284 Polyadenylation factor 100.0 5.3E-36 1.1E-40 221.9 11.2 223 4-257 96-319 (464)
14 KOG0296 Angio-associated migra 100.0 9.5E-33 2.1E-37 202.0 25.5 229 3-261 63-385 (399)
15 KOG0266 WD40 repeat-containing 100.0 6.9E-33 1.5E-37 223.1 25.1 231 4-260 159-395 (456)
16 KOG0271 Notchless-like WD40 re 100.0 3.8E-34 8.2E-39 210.8 16.0 187 55-255 107-299 (480)
17 KOG0291 WD40-repeat-containing 100.0 4.8E-32 1E-36 214.9 24.9 228 4-261 307-537 (893)
18 KOG0284 Polyadenylation factor 100.0 8E-34 1.7E-38 210.4 13.7 229 3-261 137-367 (464)
19 KOG0295 WD40 repeat-containing 100.0 1.1E-32 2.5E-37 201.6 18.7 233 5-261 109-351 (406)
20 KOG0266 WD40 repeat-containing 100.0 6.8E-32 1.5E-36 217.3 24.4 229 4-261 203-439 (456)
21 KOG0315 G-protein beta subunit 100.0 8.6E-31 1.9E-35 182.9 24.4 219 5-253 84-309 (311)
22 cd00200 WD40 WD40 domain, foun 100.0 2.7E-30 5.9E-35 197.1 27.8 228 3-260 8-235 (289)
23 KOG0265 U5 snRNP-specific prot 100.0 8.1E-31 1.8E-35 187.5 22.8 236 4-260 47-324 (338)
24 KOG0285 Pleiotropic regulator 100.0 5.4E-31 1.2E-35 192.8 20.8 226 4-260 151-376 (460)
25 KOG0291 WD40-repeat-containing 100.0 2.8E-30 6.2E-35 204.9 26.2 229 4-261 265-495 (893)
26 KOG0265 U5 snRNP-specific prot 100.0 3.4E-31 7.3E-36 189.4 18.5 192 56-260 40-232 (338)
27 KOG0319 WD40-repeat-containing 100.0 4.9E-31 1.1E-35 208.5 19.8 236 5-260 366-605 (775)
28 KOG0306 WD40-repeat-containing 100.0 1.1E-30 2.3E-35 207.2 21.4 234 5-261 413-651 (888)
29 PTZ00421 coronin; Provisional 100.0 1.9E-29 4.2E-34 202.8 28.3 202 58-260 70-275 (493)
30 KOG0285 Pleiotropic regulator 100.0 4.6E-31 1E-35 193.1 17.0 192 55-260 143-335 (460)
31 cd00200 WD40 WD40 domain, foun 100.0 1.9E-29 4.2E-34 192.4 26.9 228 4-261 51-278 (289)
32 KOG0318 WD40 repeat stress pro 100.0 2.1E-29 4.5E-34 192.6 25.9 237 3-261 189-547 (603)
33 KOG0295 WD40 repeat-containing 100.0 1.6E-30 3.5E-35 190.4 18.2 226 7-261 153-393 (406)
34 KOG0276 Vesicle coat complex C 100.0 9.2E-31 2E-35 203.9 17.8 227 5-260 56-285 (794)
35 PLN00181 protein SPA1-RELATED; 100.0 3E-29 6.5E-34 215.6 28.1 227 4-261 532-780 (793)
36 PTZ00421 coronin; Provisional 100.0 8.1E-29 1.7E-33 199.3 28.1 229 4-254 75-313 (493)
37 KOG0645 WD40 repeat protein [G 100.0 5.2E-29 1.1E-33 176.0 23.4 196 56-260 7-211 (312)
38 KOG0282 mRNA splicing factor [ 100.0 2.8E-31 6E-36 200.7 12.3 223 6-257 216-487 (503)
39 KOG0645 WD40 repeat protein [G 100.0 2.9E-28 6.2E-33 172.2 25.0 222 4-253 14-242 (312)
40 KOG1407 WD40 repeat protein [F 100.0 3.5E-29 7.6E-34 176.0 20.1 227 4-260 20-288 (313)
41 KOG0305 Anaphase promoting com 100.0 3.1E-29 6.6E-34 195.8 21.8 228 4-261 217-448 (484)
42 KOG0310 Conserved WD40 repeat- 100.0 2.8E-29 6E-34 190.2 20.8 225 4-260 68-295 (487)
43 KOG0318 WD40 repeat stress pro 100.0 1.4E-28 3E-33 188.2 24.7 230 3-261 102-337 (603)
44 KOG0316 Conserved WD40 repeat- 100.0 1.9E-28 4.1E-33 170.1 22.2 225 3-256 16-282 (307)
45 KOG0640 mRNA cleavage stimulat 100.0 2.2E-29 4.7E-34 181.4 17.9 221 2-243 110-346 (430)
46 KOG0277 Peroxisomal targeting 100.0 1.1E-29 2.5E-34 177.8 15.3 229 5-260 61-295 (311)
47 KOG0283 WD40 repeat-containing 100.0 2.6E-29 5.7E-34 201.5 19.5 236 3-261 266-563 (712)
48 PLN00181 protein SPA1-RELATED; 100.0 5E-28 1.1E-32 208.1 28.7 232 3-261 482-725 (793)
49 PTZ00420 coronin; Provisional 100.0 8E-28 1.7E-32 194.7 27.9 229 4-256 74-318 (568)
50 KOG0289 mRNA splicing factor [ 100.0 1.2E-28 2.5E-33 184.5 20.3 225 7-261 222-449 (506)
51 KOG0319 WD40-repeat-containing 100.0 4.7E-28 1E-32 191.9 22.1 231 5-261 324-564 (775)
52 PTZ00420 coronin; Provisional 100.0 4.6E-27 1E-31 190.3 27.4 199 56-260 67-279 (568)
53 KOG0313 Microtubule binding pr 100.0 5.9E-28 1.3E-32 177.9 20.1 235 4-255 144-400 (423)
54 KOG0293 WD40 repeat-containing 100.0 9.7E-28 2.1E-32 178.7 21.1 230 4-257 224-495 (519)
55 KOG0275 Conserved WD40 repeat- 100.0 2.5E-29 5.4E-34 182.4 12.3 236 4-261 213-496 (508)
56 KOG0292 Vesicle coat complex C 100.0 6.3E-28 1.4E-32 194.9 21.3 228 2-260 49-308 (1202)
57 KOG0278 Serine/threonine kinas 100.0 9E-29 1.9E-33 173.2 14.2 234 4-261 14-284 (334)
58 KOG0288 WD40 repeat protein Ti 100.0 2.2E-28 4.7E-33 181.9 17.1 224 4-260 219-447 (459)
59 KOG0264 Nucleosome remodeling 100.0 3.2E-28 6.9E-33 182.9 18.1 241 5-260 125-389 (422)
60 KOG0292 Vesicle coat complex C 100.0 7.6E-28 1.6E-32 194.5 20.1 227 4-260 9-266 (1202)
61 KOG0289 mRNA splicing factor [ 100.0 3E-27 6.4E-32 177.1 21.6 230 5-261 262-493 (506)
62 KOG1446 Histone H3 (Lys4) meth 100.0 5E-26 1.1E-30 164.2 25.5 191 56-260 93-291 (311)
63 KOG0647 mRNA export protein (c 100.0 5.9E-27 1.3E-31 168.0 20.5 229 4-260 27-309 (347)
64 KOG0277 Peroxisomal targeting 100.0 1E-26 2.2E-31 163.1 21.0 234 6-257 10-247 (311)
65 KOG0643 Translation initiation 100.0 1.9E-26 4.2E-31 162.8 21.9 225 4-260 10-247 (327)
66 KOG0973 Histone transcription 100.0 3.4E-27 7.5E-32 194.1 20.8 242 3-254 12-275 (942)
67 KOG0276 Vesicle coat complex C 100.0 3.9E-27 8.4E-32 183.9 19.5 230 3-260 12-243 (794)
68 KOG0310 Conserved WD40 repeat- 100.0 5.1E-27 1.1E-31 178.0 19.3 225 4-260 26-254 (487)
69 KOG0641 WD40 repeat protein [G 100.0 9.2E-26 2E-30 156.2 23.8 242 2-260 30-289 (350)
70 KOG0269 WD40 repeat-containing 100.0 1.5E-27 3.2E-32 190.0 16.5 225 8-254 91-319 (839)
71 KOG0316 Conserved WD40 repeat- 100.0 5.3E-27 1.1E-31 162.9 17.0 187 56-260 10-199 (307)
72 KOG0281 Beta-TrCP (transducin 100.0 4.8E-28 1E-32 177.1 11.8 213 4-253 237-458 (499)
73 KOG0281 Beta-TrCP (transducin 100.0 3.7E-28 7.9E-33 177.7 11.1 212 3-254 196-410 (499)
74 KOG1036 Mitotic spindle checkp 100.0 5.8E-26 1.3E-30 163.3 21.8 225 3-261 53-291 (323)
75 KOG0772 Uncharacterized conser 100.0 5.4E-27 1.2E-31 179.3 16.4 242 3-261 166-426 (641)
76 KOG0305 Anaphase promoting com 100.0 3.8E-26 8.2E-31 178.6 21.4 220 10-260 183-403 (484)
77 KOG0278 Serine/threonine kinas 100.0 4.8E-27 1E-31 164.6 14.6 203 3-236 99-301 (334)
78 KOG0973 Histone transcription 100.0 5.8E-26 1.3E-30 187.0 22.3 241 3-260 68-341 (942)
79 KOG0293 WD40 repeat-containing 100.0 8.3E-27 1.8E-31 173.8 15.7 209 3-233 268-514 (519)
80 KOG0308 Conserved WD40 repeat- 99.9 1.8E-26 3.8E-31 180.8 17.9 227 15-260 33-271 (735)
81 KOG0275 Conserved WD40 repeat- 99.9 4.1E-28 8.9E-33 176.1 8.2 187 62-254 212-402 (508)
82 KOG0296 Angio-associated migra 99.9 1.2E-25 2.7E-30 165.0 20.6 189 56-257 57-246 (399)
83 KOG0772 Uncharacterized conser 99.9 2.2E-26 4.7E-31 176.0 16.9 236 4-256 214-469 (641)
84 KOG0283 WD40 repeat-containing 99.9 3.7E-26 8.1E-31 183.6 19.0 192 56-256 259-513 (712)
85 KOG0267 Microtubule severing p 99.9 2.2E-27 4.7E-32 187.9 11.2 215 19-260 40-254 (825)
86 KOG1407 WD40 repeat protein [F 99.9 5.6E-26 1.2E-30 160.0 16.5 193 57-261 14-248 (313)
87 KOG0282 mRNA splicing factor [ 99.9 2.6E-27 5.6E-32 179.4 10.4 193 55-260 206-401 (503)
88 KOG0299 U3 snoRNP-associated p 99.9 5E-25 1.1E-29 166.2 21.5 224 5-260 203-441 (479)
89 KOG2055 WD40 repeat protein [G 99.9 3.5E-25 7.5E-30 167.2 19.8 232 3-261 212-452 (514)
90 KOG1332 Vesicle coat complex C 99.9 2.6E-25 5.7E-30 155.3 17.5 225 19-261 23-273 (299)
91 KOG0641 WD40 repeat protein [G 99.9 1.3E-23 2.9E-28 145.6 24.9 229 3-257 88-332 (350)
92 KOG0643 Translation initiation 99.9 8.1E-25 1.8E-29 154.7 19.3 191 57-261 4-207 (327)
93 KOG0264 Nucleosome remodeling 99.9 3.6E-25 7.8E-30 166.6 18.0 205 8-232 181-404 (422)
94 KOG0294 WD40 repeat-containing 99.9 3.2E-24 7E-29 154.9 21.3 194 56-260 36-267 (362)
95 KOG0646 WD40 repeat protein [G 99.9 9.6E-25 2.1E-29 164.9 19.0 228 4-254 81-329 (476)
96 KOG0640 mRNA cleavage stimulat 99.9 3.1E-25 6.8E-30 160.1 14.6 233 4-259 172-411 (430)
97 KOG0306 WD40-repeat-containing 99.9 8.5E-24 1.8E-28 168.5 23.6 238 2-261 318-567 (888)
98 KOG0313 Microtubule binding pr 99.9 4.1E-24 8.8E-29 157.8 20.2 216 19-260 115-361 (423)
99 KOG2096 WD40 repeat protein [G 99.9 6.9E-25 1.5E-29 158.8 15.9 173 53-232 76-308 (420)
100 KOG0639 Transducin-like enhanc 99.9 3.1E-24 6.8E-29 164.0 17.2 187 62-261 464-650 (705)
101 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.3E-22 2.9E-27 156.4 26.6 224 6-260 32-264 (300)
102 KOG0294 WD40 repeat-containing 99.9 3.8E-23 8.3E-28 149.4 21.6 216 3-252 42-305 (362)
103 KOG0274 Cdc4 and related F-box 99.9 1E-23 2.2E-28 170.4 20.8 212 4-253 249-463 (537)
104 KOG4283 Transcription-coupled 99.9 1.1E-23 2.3E-28 151.2 17.4 197 59-261 39-263 (397)
105 KOG2055 WD40 repeat protein [G 99.9 8.9E-24 1.9E-28 159.7 17.5 232 4-261 257-499 (514)
106 KOG0308 Conserved WD40 repeat- 99.9 1.4E-23 3E-28 164.7 18.6 198 20-235 86-288 (735)
107 KOG4328 WD40 protein [Function 99.9 1.6E-23 3.4E-28 158.2 17.7 235 4-261 186-437 (498)
108 KOG0269 WD40 repeat-containing 99.9 4.6E-24 1E-28 170.3 15.6 208 38-259 63-278 (839)
109 KOG0300 WD40 repeat-containing 99.9 1.1E-23 2.4E-28 152.7 16.1 220 19-260 160-414 (481)
110 KOG0274 Cdc4 and related F-box 99.9 2.7E-23 5.9E-28 167.9 19.6 211 5-252 209-421 (537)
111 KOG0299 U3 snoRNP-associated p 99.9 6.6E-23 1.4E-27 154.8 20.1 231 3-261 141-397 (479)
112 KOG1539 WD repeat protein [Gen 99.9 3.3E-23 7.1E-28 166.7 19.0 237 5-261 396-634 (910)
113 KOG0302 Ribosome Assembly prot 99.9 8.2E-23 1.8E-27 151.0 19.6 170 54-232 202-378 (440)
114 KOG1274 WD40 repeat protein [G 99.9 1.2E-22 2.6E-27 165.1 22.3 225 7-261 16-249 (933)
115 KOG2048 WD40 repeat protein [G 99.9 4E-22 8.7E-27 157.1 24.4 226 5-260 26-261 (691)
116 KOG0270 WD40 repeat-containing 99.9 4E-23 8.7E-28 155.4 17.4 230 7-257 176-431 (463)
117 KOG0268 Sof1-like rRNA process 99.9 2.9E-24 6.2E-29 157.9 10.8 220 5-260 67-288 (433)
118 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.4E-21 5.2E-26 149.4 26.3 211 20-260 2-222 (300)
119 KOG0771 Prolactin regulatory e 99.9 1E-22 2.2E-27 152.4 17.5 141 114-260 146-340 (398)
120 KOG0307 Vesicle coat complex C 99.9 1.4E-23 3E-28 174.0 14.2 236 4-257 64-309 (1049)
121 KOG1446 Histone H3 (Lys4) meth 99.9 6.5E-22 1.4E-26 143.1 21.0 189 58-261 9-204 (311)
122 KOG1274 WD40 repeat protein [G 99.9 3.8E-22 8.2E-27 162.2 21.9 221 4-259 56-285 (933)
123 KOG1332 Vesicle coat complex C 99.9 1.4E-22 3.1E-27 141.7 16.3 207 4-232 56-286 (299)
124 KOG4283 Transcription-coupled 99.9 2.5E-22 5.3E-27 144.3 17.5 211 3-236 42-280 (397)
125 KOG0639 Transducin-like enhanc 99.9 1.9E-23 4.2E-28 159.8 12.3 192 60-261 416-609 (705)
126 KOG4378 Nuclear protein COP1 [ 99.9 3.3E-22 7.1E-27 152.9 17.9 208 20-256 92-305 (673)
127 KOG0302 Ribosome Assembly prot 99.9 2E-22 4.4E-27 148.9 16.2 201 6-229 213-435 (440)
128 KOG1009 Chromatin assembly com 99.9 2.1E-22 4.4E-27 150.1 16.4 174 4-185 13-196 (434)
129 KOG0288 WD40 repeat protein Ti 99.9 7.5E-23 1.6E-27 152.7 13.0 226 4-261 175-404 (459)
130 KOG0301 Phospholipase A2-activ 99.9 2.5E-21 5.3E-26 153.2 21.7 212 10-260 64-275 (745)
131 KOG0303 Actin-binding protein 99.9 2.4E-22 5.1E-27 149.4 14.8 199 58-259 76-278 (472)
132 KOG2106 Uncharacterized conser 99.9 5.4E-21 1.2E-25 146.4 22.2 226 5-260 247-507 (626)
133 KOG2919 Guanine nucleotide-bin 99.9 1.4E-21 3.1E-26 141.9 18.0 241 2-260 102-356 (406)
134 KOG0267 Microtubule severing p 99.9 2.4E-23 5.2E-28 165.2 9.4 183 4-211 70-252 (825)
135 KOG1273 WD40 repeat protein [G 99.9 1.5E-21 3.2E-26 141.5 17.5 224 7-260 26-265 (405)
136 KOG0290 Conserved WD40 repeat- 99.9 2.8E-21 6E-26 138.5 18.6 242 4-257 44-300 (364)
137 KOG0268 Sof1-like rRNA process 99.9 6.8E-23 1.5E-27 150.7 10.6 167 58-237 182-350 (433)
138 KOG1523 Actin-related protein 99.9 3E-21 6.4E-26 140.0 18.0 232 4-259 10-264 (361)
139 KOG2445 Nuclear pore complex c 99.9 1.1E-19 2.4E-24 131.3 25.5 240 5-261 14-305 (361)
140 KOG0646 WD40 repeat protein [G 99.9 1.2E-20 2.6E-25 143.0 21.1 185 63-261 81-294 (476)
141 KOG0647 mRNA export protein (c 99.9 6.5E-21 1.4E-25 137.2 18.6 183 61-258 25-212 (347)
142 KOG4378 Nuclear protein COP1 [ 99.9 2E-21 4.4E-26 148.6 15.9 185 65-261 81-267 (673)
143 KOG1539 WD repeat protein [Gen 99.9 5E-21 1.1E-25 154.3 18.4 197 5-233 449-649 (910)
144 KOG0300 WD40 repeat-containing 99.9 7.1E-21 1.5E-25 138.3 17.2 227 4-255 190-455 (481)
145 KOG1007 WD repeat protein TSSC 99.9 1.3E-20 2.8E-25 135.1 18.1 246 4-259 63-345 (370)
146 KOG1036 Mitotic spindle checkp 99.9 5E-20 1.1E-24 133.0 21.1 223 4-261 13-249 (323)
147 KOG2139 WD40 repeat protein [G 99.9 2.2E-20 4.8E-25 137.7 18.6 232 6-261 100-362 (445)
148 KOG0290 Conserved WD40 repeat- 99.9 9.7E-21 2.1E-25 135.8 16.1 241 2-260 94-352 (364)
149 KOG1034 Transcriptional repres 99.9 6.6E-21 1.4E-25 138.7 15.0 230 5-260 90-369 (385)
150 KOG1408 WD40 repeat protein [F 99.9 7.3E-21 1.6E-25 151.5 16.4 229 4-260 459-699 (1080)
151 KOG0301 Phospholipase A2-activ 99.9 2.3E-20 5E-25 147.8 18.4 219 5-260 15-235 (745)
152 KOG0303 Actin-binding protein 99.9 5.3E-20 1.2E-24 137.1 18.3 210 4-235 81-297 (472)
153 KOG1538 Uncharacterized conser 99.9 7.2E-20 1.6E-24 145.1 19.7 230 5-261 13-280 (1081)
154 KOG2106 Uncharacterized conser 99.9 4.4E-19 9.6E-24 136.1 23.0 223 5-261 201-464 (626)
155 KOG1408 WD40 repeat protein [F 99.9 1.8E-20 3.9E-25 149.4 15.8 209 4-233 501-714 (1080)
156 KOG1009 Chromatin assembly com 99.9 2.6E-20 5.7E-25 139.0 14.8 193 63-261 13-247 (434)
157 KOG2048 WD40 repeat protein [G 99.9 6.3E-19 1.4E-23 139.4 23.0 222 4-255 69-302 (691)
158 KOG0270 WD40 repeat-containing 99.9 5.3E-20 1.2E-24 138.7 16.0 204 6-237 245-454 (463)
159 KOG0321 WD40 repeat-containing 99.8 1.1E-19 2.3E-24 142.9 16.6 236 8-261 53-334 (720)
160 KOG1007 WD repeat protein TSSC 99.8 1.4E-19 3E-24 129.9 15.7 217 32-259 37-273 (370)
161 KOG0307 Vesicle coat complex C 99.8 1.8E-20 4E-25 155.8 12.8 209 3-235 115-330 (1049)
162 PRK01742 tolB translocation pr 99.8 2.3E-19 5E-24 144.4 18.8 217 4-255 203-426 (429)
163 KOG1524 WD40 repeat-containing 99.8 9.5E-20 2.1E-24 140.8 15.6 176 56-260 97-272 (737)
164 KOG1273 WD40 repeat protein [G 99.8 3.4E-19 7.4E-24 129.3 17.4 182 66-261 26-213 (405)
165 KOG1063 RNA polymerase II elon 99.8 9.3E-20 2E-24 144.4 15.5 244 6-261 193-635 (764)
166 KOG0649 WD40 repeat protein [G 99.8 2.1E-18 4.5E-23 121.1 19.8 227 6-255 12-257 (325)
167 PRK01742 tolB translocation pr 99.8 5.3E-19 1.2E-23 142.3 18.8 197 37-261 184-388 (429)
168 KOG1445 Tumor-specific antigen 99.8 3.8E-20 8.2E-25 145.8 11.1 170 63-233 627-799 (1012)
169 PRK05137 tolB translocation pr 99.8 2.4E-18 5.2E-23 139.0 21.8 202 37-260 182-392 (435)
170 PRK03629 tolB translocation pr 99.8 3.2E-18 6.8E-23 137.6 22.1 218 3-254 197-427 (429)
171 PRK03629 tolB translocation pr 99.8 4.8E-18 1E-22 136.6 23.0 202 38-261 180-390 (429)
172 KOG0321 WD40 repeat-containing 99.8 1.9E-18 4.1E-23 136.0 19.7 232 3-255 99-371 (720)
173 KOG2394 WD40 protein DMR-N9 [G 99.8 7.9E-19 1.7E-23 135.7 17.3 206 38-254 145-384 (636)
174 PRK11028 6-phosphogluconolacto 99.8 1.9E-17 4E-22 129.5 25.5 189 64-261 80-290 (330)
175 KOG1587 Cytoplasmic dynein int 99.8 2.4E-18 5.1E-23 138.7 20.3 244 3-261 241-503 (555)
176 KOG0771 Prolactin regulatory e 99.8 8.4E-19 1.8E-23 131.6 16.4 197 8-233 148-355 (398)
177 KOG1063 RNA polymerase II elon 99.8 1.5E-18 3.3E-23 137.6 18.2 140 109-254 522-674 (764)
178 KOG4328 WD40 protein [Function 99.8 2.7E-19 5.9E-24 135.5 12.8 195 58-260 181-385 (498)
179 KOG2445 Nuclear pore complex c 99.8 2.2E-17 4.7E-22 119.6 20.9 214 3-232 58-318 (361)
180 PRK02889 tolB translocation pr 99.8 9.1E-18 2E-22 135.1 21.3 200 38-261 177-387 (427)
181 PRK04922 tolB translocation pr 99.8 1.3E-17 2.7E-22 134.7 21.4 199 38-260 185-394 (433)
182 KOG2394 WD40 protein DMR-N9 [G 99.8 4.6E-18 9.9E-23 131.5 16.8 144 63-207 219-384 (636)
183 PRK04922 tolB translocation pr 99.8 3.1E-17 6.7E-22 132.4 21.5 222 3-254 202-432 (433)
184 PF08662 eIF2A: Eukaryotic tra 99.8 3.9E-17 8.5E-22 116.8 19.6 159 67-239 9-185 (194)
185 PRK02889 tolB translocation pr 99.8 7.7E-17 1.7E-21 129.8 22.5 224 3-255 194-425 (427)
186 PRK11028 6-phosphogluconolacto 99.8 3.3E-16 7.2E-21 122.4 25.3 190 63-261 34-244 (330)
187 KOG0642 Cell-cycle nuclear pro 99.8 1.1E-17 2.3E-22 130.0 15.5 218 9-243 299-572 (577)
188 PRK05137 tolB translocation pr 99.8 1.3E-16 2.8E-21 129.0 21.9 222 3-255 200-433 (435)
189 KOG2110 Uncharacterized conser 99.8 9.8E-16 2.1E-20 113.6 24.1 159 63-233 87-249 (391)
190 KOG1524 WD40 repeat-containing 99.8 2.7E-17 5.8E-22 127.5 16.2 167 76-259 76-242 (737)
191 KOG1445 Tumor-specific antigen 99.8 2E-17 4.2E-22 130.8 15.5 203 56-260 72-278 (1012)
192 KOG1188 WD40 repeat protein [G 99.8 3.6E-17 7.8E-22 120.0 15.7 194 19-236 40-246 (376)
193 PRK01029 tolB translocation pr 99.8 4E-16 8.7E-21 125.1 23.2 229 4-256 184-426 (428)
194 KOG1523 Actin-related protein 99.8 2.7E-17 5.8E-22 119.7 14.7 190 62-260 9-222 (361)
195 KOG0644 Uncharacterized conser 99.8 3E-18 6.6E-23 138.8 10.8 223 5-260 191-454 (1113)
196 PRK00178 tolB translocation pr 99.8 4E-16 8.6E-21 126.3 23.2 201 36-260 178-389 (430)
197 COG2319 FOG: WD40 repeat [Gene 99.8 3.7E-15 7.9E-20 119.9 28.9 219 6-253 111-337 (466)
198 COG2319 FOG: WD40 repeat [Gene 99.8 1.7E-15 3.6E-20 121.9 26.5 227 4-260 65-300 (466)
199 KOG2096 WD40 repeat protein [G 99.8 1.5E-16 3.3E-21 116.0 17.4 190 19-230 199-400 (420)
200 KOG0650 WD40 repeat nucleolar 99.8 1.1E-17 2.5E-22 130.9 12.5 199 55-260 392-666 (733)
201 KOG1272 WD40-repeat-containing 99.8 1.5E-18 3.1E-23 132.0 7.2 216 8-258 133-348 (545)
202 TIGR02800 propeller_TolB tol-p 99.8 3.6E-16 7.8E-21 126.2 21.5 199 38-261 171-381 (417)
203 KOG0642 Cell-cycle nuclear pro 99.8 3.8E-17 8.2E-22 127.0 13.8 200 56-261 287-548 (577)
204 PF08662 eIF2A: Eukaryotic tra 99.7 6.4E-16 1.4E-20 110.6 19.2 163 9-192 10-186 (194)
205 KOG1034 Transcriptional repres 99.7 2.7E-16 5.8E-21 115.0 16.5 169 57-234 32-213 (385)
206 KOG2139 WD40 repeat protein [G 99.7 2E-16 4.4E-21 117.1 15.5 182 64-260 99-296 (445)
207 KOG4227 WD40 repeat protein [G 99.7 6.8E-17 1.5E-21 121.0 12.8 202 54-260 47-260 (609)
208 KOG2110 Uncharacterized conser 99.7 5.6E-15 1.2E-19 109.7 22.7 220 5-261 6-235 (391)
209 PRK01029 tolB translocation pr 99.7 1.6E-15 3.6E-20 121.6 21.6 204 38-260 166-386 (428)
210 PRK04792 tolB translocation pr 99.7 2.4E-15 5.2E-20 121.6 22.4 220 4-254 217-446 (448)
211 KOG0322 G-protein beta subunit 99.7 2E-16 4.3E-21 112.4 14.0 232 4-260 14-309 (323)
212 KOG1963 WD40 repeat protein [G 99.7 3.1E-15 6.8E-20 122.0 22.7 163 4-187 205-378 (792)
213 PRK04792 tolB translocation pr 99.7 2.3E-15 5.1E-20 121.6 22.1 201 38-260 199-408 (448)
214 KOG0649 WD40 repeat protein [G 99.7 4.6E-16 9.9E-21 109.5 15.4 169 64-241 11-195 (325)
215 PRK00178 tolB translocation pr 99.7 6.4E-15 1.4E-19 119.3 24.0 222 3-255 197-428 (430)
216 KOG2919 Guanine nucleotide-bin 99.7 1.4E-15 3.1E-20 111.1 16.3 192 64-260 50-266 (406)
217 KOG2111 Uncharacterized conser 99.7 1.8E-14 3.8E-19 105.1 21.3 191 20-233 59-257 (346)
218 KOG0322 G-protein beta subunit 99.7 3.2E-16 7E-21 111.3 11.7 169 4-183 150-322 (323)
219 PF10282 Lactonase: Lactonase, 99.7 1E-12 2.2E-17 103.1 31.6 220 34-261 61-308 (345)
220 KOG1310 WD40 repeat protein [G 99.7 1.4E-16 3.1E-21 123.9 9.6 166 56-232 43-231 (758)
221 KOG3881 Uncharacterized conser 99.7 4.6E-15 9.9E-20 110.9 17.1 218 21-255 117-342 (412)
222 KOG4227 WD40 repeat protein [G 99.7 3.9E-15 8.4E-20 111.7 16.6 166 4-185 56-226 (609)
223 KOG1188 WD40 repeat protein [G 99.7 1.3E-15 2.8E-20 111.9 13.8 170 76-256 41-223 (376)
224 KOG4497 Uncharacterized conser 99.7 1.4E-14 3.1E-19 106.3 19.0 226 2-260 89-418 (447)
225 TIGR02800 propeller_TolB tol-p 99.7 2.8E-14 6E-19 115.3 21.9 219 5-253 190-417 (417)
226 KOG1587 Cytoplasmic dynein int 99.7 8.5E-15 1.8E-19 118.4 17.8 216 3-233 290-517 (555)
227 KOG1963 WD40 repeat protein [G 99.7 2.1E-14 4.6E-19 117.2 18.2 193 60-261 202-415 (792)
228 KOG1538 Uncharacterized conser 99.7 1.5E-14 3.2E-19 115.5 16.8 185 65-260 14-238 (1081)
229 KOG1272 WD40-repeat-containing 99.6 3.7E-16 8E-21 119.1 7.3 218 6-259 172-394 (545)
230 KOG0650 WD40 repeat nucleolar 99.6 5.1E-15 1.1E-19 116.3 13.7 198 4-229 521-732 (733)
231 PF10282 Lactonase: Lactonase, 99.6 2.8E-12 6E-17 100.7 29.3 218 32-261 10-261 (345)
232 PRK04043 tolB translocation pr 99.6 1.8E-13 3.9E-18 109.3 22.4 197 38-261 170-384 (419)
233 PF02239 Cytochrom_D1: Cytochr 99.6 5.1E-13 1.1E-17 104.9 24.1 196 19-240 5-210 (369)
234 KOG2111 Uncharacterized conser 99.6 1.7E-13 3.7E-18 100.1 19.2 223 4-261 5-243 (346)
235 COG4946 Uncharacterized protei 99.6 1.9E-13 4.1E-18 105.2 20.3 209 38-260 288-504 (668)
236 KOG4497 Uncharacterized conser 99.6 6.6E-16 1.4E-20 113.2 6.6 133 68-211 13-147 (447)
237 KOG1310 WD40 repeat protein [G 99.6 1.6E-14 3.5E-19 112.7 13.4 213 4-237 50-308 (758)
238 KOG4547 WD40 repeat-containing 99.6 2.2E-13 4.7E-18 107.0 19.5 176 73-260 3-205 (541)
239 KOG1517 Guanine nucleotide bin 99.6 1.1E-13 2.3E-18 115.7 18.3 233 5-260 1110-1367(1387)
240 KOG2321 WD40 repeat protein [G 99.6 2E-13 4.4E-18 107.1 18.8 169 78-259 148-328 (703)
241 KOG1240 Protein kinase contain 99.6 4.8E-13 1E-17 113.3 22.3 230 1-241 1045-1282(1431)
242 KOG3881 Uncharacterized conser 99.6 2.6E-13 5.7E-18 101.6 18.1 188 62-261 104-307 (412)
243 PRK04043 tolB translocation pr 99.6 2.2E-12 4.7E-17 103.2 24.4 216 5-252 188-419 (419)
244 COG2706 3-carboxymuconate cycl 99.6 6.7E-12 1.4E-16 93.6 24.9 216 34-261 15-260 (346)
245 COG2706 3-carboxymuconate cycl 99.6 8.2E-12 1.8E-16 93.2 25.0 238 6-261 41-307 (346)
246 KOG1517 Guanine nucleotide bin 99.6 1.1E-12 2.4E-17 109.8 21.8 237 6-261 1066-1321(1387)
247 COG4946 Uncharacterized protei 99.6 2E-12 4.4E-17 99.6 20.8 159 38-214 342-505 (668)
248 KOG2041 WD40 repeat protein [G 99.6 2.8E-13 6E-18 109.2 15.6 239 2-261 12-275 (1189)
249 KOG2321 WD40 repeat protein [G 99.5 3.8E-13 8.2E-18 105.6 15.3 180 38-233 156-344 (703)
250 KOG0974 WD-repeat protein WDR6 99.5 3E-13 6.6E-18 112.6 15.7 185 19-233 99-289 (967)
251 KOG1240 Protein kinase contain 99.5 6.7E-13 1.4E-17 112.5 17.3 195 54-254 1039-1248(1431)
252 TIGR02658 TTQ_MADH_Hv methylam 99.5 2.5E-10 5.5E-15 88.1 27.3 213 38-260 28-315 (352)
253 KOG0280 Uncharacterized conser 99.5 1.9E-11 4.2E-16 88.7 19.6 227 19-255 24-264 (339)
254 PF02239 Cytochrom_D1: Cytochr 99.5 6.6E-12 1.4E-16 98.7 18.3 172 76-260 6-187 (369)
255 KOG0644 Uncharacterized conser 99.5 8E-14 1.7E-18 113.7 6.4 190 58-259 185-410 (1113)
256 KOG4547 WD40 repeat-containing 99.5 3.3E-11 7.2E-16 95.0 20.2 192 18-232 4-220 (541)
257 KOG0974 WD-repeat protein WDR6 99.4 8.5E-12 1.8E-16 104.2 16.8 175 71-257 95-271 (967)
258 KOG2315 Predicted translation 99.4 4E-11 8.6E-16 94.1 19.3 224 5-254 166-410 (566)
259 KOG1354 Serine/threonine prote 99.4 7.9E-11 1.7E-15 87.4 18.7 238 4-260 25-345 (433)
260 PF08450 SGL: SMP-30/Gluconola 99.4 2.9E-09 6.3E-14 79.9 27.9 221 9-260 4-241 (246)
261 KOG4532 WD40-like repeat conta 99.4 2.3E-10 4.9E-15 82.3 20.1 198 20-240 85-290 (344)
262 KOG3914 WD repeat protein WDR4 99.4 1.3E-11 2.7E-16 93.1 12.9 166 65-241 64-232 (390)
263 KOG0280 Uncharacterized conser 99.4 9.2E-11 2E-15 85.2 16.4 209 6-233 71-285 (339)
264 KOG2315 Predicted translation 99.4 2.1E-10 4.5E-15 90.2 19.2 204 38-261 147-371 (566)
265 KOG1334 WD40 repeat protein [G 99.4 4E-12 8.6E-17 98.1 9.0 213 3-235 231-469 (559)
266 TIGR02658 TTQ_MADH_Hv methylam 99.4 5.2E-09 1.1E-13 81.0 25.8 192 38-240 78-338 (352)
267 PLN02919 haloacid dehalogenase 99.3 4.2E-09 9.2E-14 93.3 26.8 167 65-236 684-892 (1057)
268 PLN02919 haloacid dehalogenase 99.3 9.1E-09 2E-13 91.3 28.2 235 9-260 572-874 (1057)
269 KOG2314 Translation initiation 99.3 3.1E-10 6.7E-15 89.3 15.3 184 66-261 213-410 (698)
270 KOG4190 Uncharacterized conser 99.3 3.2E-11 7E-16 95.0 10.0 181 52-239 724-913 (1034)
271 KOG1354 Serine/threonine prote 99.3 1.2E-10 2.6E-15 86.5 12.2 168 60-234 161-361 (433)
272 KOG3914 WD repeat protein WDR4 99.3 1.5E-10 3.2E-15 87.5 12.4 156 18-193 73-232 (390)
273 KOG1334 WD40 repeat protein [G 99.3 7.8E-11 1.7E-15 91.1 10.7 192 56-257 135-349 (559)
274 KOG1064 RAVE (regulator of V-A 99.2 5.9E-11 1.3E-15 104.5 9.1 184 19-241 2220-2407(2439)
275 KOG4714 Nucleoporin [Nuclear s 99.2 3.8E-10 8.1E-15 80.8 11.3 202 20-233 48-255 (319)
276 PF04762 IKI3: IKI3 family; I 99.2 1.2E-08 2.7E-13 89.0 22.7 139 63-211 209-362 (928)
277 COG0823 TolB Periplasmic compo 99.2 2E-09 4.4E-14 85.8 16.6 187 58-260 187-385 (425)
278 PF04762 IKI3: IKI3 family; I 99.2 2.4E-08 5.1E-13 87.3 24.3 227 4-256 75-360 (928)
279 KOG2695 WD40 repeat protein [G 99.2 2E-10 4.4E-15 85.3 9.1 161 80-254 229-402 (425)
280 KOG2314 Translation initiation 99.1 7.7E-10 1.7E-14 87.2 10.9 136 116-260 214-362 (698)
281 KOG1912 WD40 repeat protein [G 99.1 2.1E-08 4.6E-13 82.4 19.0 218 8-257 19-285 (1062)
282 COG5170 CDC55 Serine/threonine 99.1 3.3E-09 7.3E-14 78.1 13.2 223 2-243 24-321 (460)
283 PF15492 Nbas_N: Neuroblastoma 99.1 1.4E-07 3E-12 69.0 20.5 172 64-241 44-268 (282)
284 COG5354 Uncharacterized protei 99.1 7.9E-08 1.7E-12 75.3 19.9 152 67-234 226-397 (561)
285 TIGR03300 assembly_YfgL outer 99.1 7.6E-08 1.7E-12 76.9 20.5 159 76-245 191-351 (377)
286 COG0823 TolB Periplasmic compo 99.1 2.9E-08 6.2E-13 79.4 17.4 182 5-212 193-384 (425)
287 KOG2066 Vacuolar assembly/sort 99.1 9.9E-09 2.1E-13 84.4 14.5 179 7-232 42-233 (846)
288 PF07433 DUF1513: Protein of u 99.1 1.2E-06 2.6E-11 66.0 24.3 212 18-256 16-269 (305)
289 KOG4532 WD40-like repeat conta 99.1 2.2E-08 4.8E-13 72.3 14.6 180 68-257 72-263 (344)
290 COG5354 Uncharacterized protei 99.1 2.3E-08 5E-13 78.2 15.8 185 62-261 31-239 (561)
291 KOG1064 RAVE (regulator of V-A 99.0 1E-09 2.2E-14 97.1 8.8 165 59-240 2204-2374(2439)
292 KOG1832 HIV-1 Vpr-binding prot 99.0 2.3E-10 4.9E-15 95.0 3.8 209 5-259 1102-1316(1516)
293 KOG1409 Uncharacterized conser 99.0 1.2E-08 2.6E-13 76.0 11.5 80 56-141 190-269 (404)
294 PF15492 Nbas_N: Neuroblastoma 99.0 2.6E-07 5.6E-12 67.6 18.0 176 8-194 47-269 (282)
295 KOG2695 WD40 repeat protein [G 99.0 3.2E-09 7E-14 79.1 8.2 131 62-195 251-387 (425)
296 KOG1409 Uncharacterized conser 98.9 1.8E-07 3.9E-12 70.0 16.2 202 5-235 69-273 (404)
297 COG5170 CDC55 Serine/threonine 98.9 1.6E-08 3.4E-13 74.7 10.1 194 63-261 26-297 (460)
298 KOG0309 Conserved WD40 repeat- 98.9 1.2E-08 2.6E-13 83.4 10.2 222 7-249 70-304 (1081)
299 PF06977 SdiA-regulated: SdiA- 98.9 8.1E-06 1.7E-10 60.5 23.8 201 6-229 23-247 (248)
300 KOG2041 WD40 repeat protein [G 98.9 1.8E-08 3.9E-13 82.2 10.6 162 64-233 15-187 (1189)
301 PF00400 WD40: WD domain, G-be 98.9 8.7E-09 1.9E-13 53.3 5.7 38 145-182 2-39 (39)
302 PF00400 WD40: WD domain, G-be 98.9 1.2E-08 2.6E-13 52.8 5.9 36 56-91 4-39 (39)
303 PF08450 SGL: SMP-30/Gluconola 98.9 2.3E-06 5E-11 64.2 20.6 175 67-260 3-199 (246)
304 PF11768 DUF3312: Protein of u 98.9 7.9E-07 1.7E-11 71.4 18.3 116 64-185 206-330 (545)
305 KOG2066 Vacuolar assembly/sort 98.9 1.9E-07 4.1E-12 77.1 15.1 170 64-260 40-221 (846)
306 KOG4190 Uncharacterized conser 98.9 7.4E-08 1.6E-12 76.6 12.3 196 19-235 747-951 (1034)
307 PF13360 PQQ_2: PQQ-like domai 98.8 4.5E-06 9.7E-11 62.3 21.4 187 21-238 38-236 (238)
308 KOG2114 Vacuolar assembly/sort 98.8 3.6E-06 7.9E-11 70.4 21.8 197 19-236 35-247 (933)
309 KOG4714 Nucleoporin [Nuclear s 98.8 2.1E-08 4.5E-13 72.1 7.8 162 4-185 79-255 (319)
310 PF00930 DPPIV_N: Dipeptidyl p 98.8 3.1E-07 6.6E-12 72.6 15.1 156 72-236 1-222 (353)
311 PF07433 DUF1513: Protein of u 98.8 7.2E-06 1.6E-10 61.9 19.9 186 64-261 5-233 (305)
312 COG3391 Uncharacterized conser 98.8 1.5E-05 3.3E-10 63.7 22.7 184 65-260 75-268 (381)
313 PRK11138 outer membrane biogen 98.8 7.6E-06 1.6E-10 65.9 21.2 156 77-243 207-364 (394)
314 KOG1920 IkappaB kinase complex 98.7 3.8E-06 8.3E-11 72.7 18.8 231 3-261 67-306 (1265)
315 PRK02888 nitrous-oxide reducta 98.7 8.9E-07 1.9E-11 72.7 14.4 93 134-233 296-405 (635)
316 PF06977 SdiA-regulated: SdiA- 98.7 3.2E-05 6.8E-10 57.4 21.0 191 58-260 16-237 (248)
317 PF11768 DUF3312: Protein of u 98.7 1.4E-06 3.1E-11 69.9 14.2 74 62-144 258-331 (545)
318 KOG1275 PAB-dependent poly(A) 98.7 4.3E-07 9.3E-12 76.2 11.5 140 19-182 187-340 (1118)
319 TIGR03300 assembly_YfgL outer 98.7 1.5E-05 3.3E-10 63.8 20.2 145 21-192 67-216 (377)
320 KOG1008 Uncharacterized conser 98.7 8.7E-09 1.9E-13 82.8 1.7 207 6-232 58-275 (783)
321 COG3386 Gluconolactonase [Carb 98.6 8.6E-05 1.9E-09 57.1 23.1 214 19-259 37-270 (307)
322 KOG1645 RING-finger-containing 98.6 9.4E-07 2E-11 67.6 12.0 81 58-146 188-270 (463)
323 KOG1275 PAB-dependent poly(A) 98.6 5.6E-07 1.2E-11 75.6 11.6 170 75-261 147-329 (1118)
324 KOG1832 HIV-1 Vpr-binding prot 98.6 3.5E-08 7.5E-13 82.5 3.9 182 57-260 1095-1282(1516)
325 KOG1912 WD40 repeat protein [G 98.6 1.4E-05 3.1E-10 66.4 18.0 205 4-233 55-305 (1062)
326 PF00930 DPPIV_N: Dipeptidyl p 98.6 5.9E-05 1.3E-09 59.8 21.3 144 112-260 183-343 (353)
327 PF13360 PQQ_2: PQQ-like domai 98.6 9.9E-05 2.2E-09 55.0 21.0 148 74-238 35-197 (238)
328 PF14583 Pectate_lyase22: Olig 98.5 9.4E-05 2E-09 57.7 20.7 221 18-260 47-298 (386)
329 KOG0309 Conserved WD40 repeat- 98.5 9.4E-07 2E-11 72.7 10.2 182 65-255 69-256 (1081)
330 KOG3621 WD40 repeat-containing 98.5 3.5E-06 7.7E-11 69.0 13.4 151 18-185 44-198 (726)
331 COG3391 Uncharacterized conser 98.5 0.00023 5E-09 57.0 22.8 178 65-255 117-309 (381)
332 KOG0882 Cyclophilin-related pe 98.5 3.6E-06 7.9E-11 65.4 11.6 196 19-238 20-237 (558)
333 KOG1920 IkappaB kinase complex 98.4 7.4E-05 1.6E-09 65.2 19.0 197 61-261 16-258 (1265)
334 KOG3617 WD40 and TPR repeat-co 98.4 6.6E-06 1.4E-10 69.1 12.3 71 7-94 62-132 (1416)
335 PF04053 Coatomer_WDAD: Coatom 98.4 9.9E-06 2.1E-10 65.4 13.0 170 58-255 27-207 (443)
336 PRK13616 lipoprotein LpqB; Pro 98.4 0.0001 2.2E-09 61.9 19.1 153 64-232 350-527 (591)
337 PRK02888 nitrous-oxide reducta 98.4 6.3E-05 1.4E-09 62.2 16.9 132 119-258 199-388 (635)
338 KOG4640 Anaphase-promoting com 98.4 2.9E-06 6.4E-11 68.6 8.9 93 113-206 21-114 (665)
339 KOG0882 Cyclophilin-related pe 98.3 5.1E-05 1.1E-09 59.3 13.6 146 82-238 119-311 (558)
340 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.00065 1.4E-08 49.8 19.3 140 19-182 23-163 (354)
341 PF08553 VID27: VID27 cytoplas 98.3 9.8E-05 2.1E-09 63.2 16.0 135 38-183 505-646 (794)
342 KOG2114 Vacuolar assembly/sort 98.3 0.0001 2.3E-09 62.1 15.7 177 69-257 29-227 (933)
343 PRK11138 outer membrane biogen 98.3 0.00029 6.3E-09 56.8 18.2 137 75-231 256-393 (394)
344 PF08596 Lgl_C: Lethal giant l 98.2 0.0014 3.1E-08 52.4 23.7 201 57-260 80-322 (395)
345 KOG1645 RING-finger-containing 98.2 5.6E-06 1.2E-10 63.5 7.5 94 136-235 175-269 (463)
346 KOG1008 Uncharacterized conser 98.2 3.4E-07 7.3E-12 74.0 0.9 180 63-256 56-255 (783)
347 PF04841 Vps16_N: Vps16, N-ter 98.2 0.0013 2.8E-08 53.2 20.8 199 38-258 62-273 (410)
348 KOG4640 Anaphase-promoting com 98.2 1E-05 2.2E-10 65.6 8.5 92 64-164 21-115 (665)
349 PRK13616 lipoprotein LpqB; Pro 98.2 6.3E-05 1.4E-09 63.2 13.0 135 113-260 350-512 (591)
350 cd00216 PQQ_DH Dehydrogenases 98.2 0.003 6.5E-08 52.5 23.1 163 69-242 222-434 (488)
351 KOG3621 WD40 repeat-containing 98.1 4.8E-05 1E-09 62.6 11.3 117 112-233 33-155 (726)
352 PF04053 Coatomer_WDAD: Coatom 98.1 0.00019 4.2E-09 58.1 14.8 128 114-261 34-161 (443)
353 PF08596 Lgl_C: Lethal giant l 98.1 0.0012 2.7E-08 52.8 18.6 189 4-211 86-320 (395)
354 KOG3617 WD40 and TPR repeat-co 98.0 2.6E-05 5.6E-10 65.7 8.3 111 65-184 17-131 (1416)
355 PF05694 SBP56: 56kDa selenium 98.0 0.0041 8.9E-08 49.5 20.0 213 38-260 99-389 (461)
356 PF03178 CPSF_A: CPSF A subuni 98.0 0.0022 4.8E-08 50.2 18.4 178 38-232 3-202 (321)
357 PF02897 Peptidase_S9_N: Proly 98.0 0.00095 2.1E-08 54.3 16.9 116 116-234 127-262 (414)
358 cd00216 PQQ_DH Dehydrogenases 98.0 0.0031 6.8E-08 52.4 19.5 159 76-240 111-327 (488)
359 KOG2395 Protein involved in va 98.0 0.00045 9.8E-09 55.5 13.6 136 38-184 357-500 (644)
360 KOG1897 Damage-specific DNA bi 97.9 0.0086 1.9E-07 52.0 21.2 240 4-261 530-792 (1096)
361 PF10647 Gmad1: Lipoprotein Lp 97.9 0.001 2.2E-08 50.1 14.3 142 114-260 25-181 (253)
362 PF08553 VID27: VID27 cytoplas 97.9 0.0013 2.9E-08 56.6 16.2 130 123-260 492-634 (794)
363 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.0013 2.8E-08 48.2 13.4 123 124-254 23-145 (354)
364 KOG4499 Ca2+-binding protein R 97.9 0.0045 9.6E-08 44.9 16.1 135 112-253 108-262 (310)
365 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.0013 2.9E-08 41.8 11.8 100 66-179 2-109 (111)
366 PF03178 CPSF_A: CPSF A subuni 97.8 0.0087 1.9E-07 46.9 20.6 194 4-207 23-237 (321)
367 smart00320 WD40 WD40 repeats. 97.8 8.2E-05 1.8E-09 37.3 5.2 36 56-91 5-40 (40)
368 smart00320 WD40 WD40 repeats. 97.8 7.5E-05 1.6E-09 37.4 5.0 35 148-182 6-40 (40)
369 PF02897 Peptidase_S9_N: Proly 97.8 0.014 3.1E-07 47.5 24.7 209 37-259 150-385 (414)
370 PF00780 CNH: CNH domain; Int 97.7 0.011 2.3E-07 45.3 18.5 144 73-237 5-170 (275)
371 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0037 8E-08 39.8 14.1 101 115-227 2-109 (111)
372 PF15390 DUF4613: Domain of un 97.7 0.0032 7E-08 51.6 14.6 117 112-233 56-187 (671)
373 PF06433 Me-amine-dh_H: Methyl 97.7 0.0086 1.9E-07 46.3 16.2 151 38-195 160-331 (342)
374 PF04841 Vps16_N: Vps16, N-ter 97.7 0.018 3.8E-07 46.8 21.3 87 120-210 186-272 (410)
375 PF06433 Me-amine-dh_H: Methyl 97.7 0.014 2.9E-07 45.2 23.1 162 76-244 148-332 (342)
376 KOG4499 Ca2+-binding protein R 97.7 0.01 2.2E-07 43.1 17.2 136 63-208 108-264 (310)
377 KOG2395 Protein involved in va 97.6 0.00092 2E-08 53.8 10.4 134 120-260 341-487 (644)
378 KOG4441 Proteins containing BT 97.6 0.026 5.7E-07 47.8 19.6 194 19-235 333-549 (571)
379 COG3386 Gluconolactonase [Carb 97.6 0.012 2.5E-07 45.6 15.4 127 37-173 143-274 (307)
380 PHA02713 hypothetical protein; 97.6 0.014 3E-07 49.4 17.1 194 19-235 304-536 (557)
381 COG3490 Uncharacterized protei 97.5 0.006 1.3E-07 45.5 12.3 142 115-260 70-241 (366)
382 PF14870 PSII_BNR: Photosynthe 97.5 0.027 5.9E-07 43.4 21.9 170 38-229 125-301 (302)
383 COG3490 Uncharacterized protei 97.5 0.004 8.8E-08 46.4 11.2 106 156-261 69-178 (366)
384 KOG2079 Vacuolar assembly/sort 97.4 0.0017 3.8E-08 56.5 10.2 102 74-183 98-202 (1206)
385 PHA03098 kelch-like protein; P 97.4 0.06 1.3E-06 45.5 20.2 196 19-235 295-514 (534)
386 PF15390 DUF4613: Domain of un 97.4 0.021 4.6E-07 47.1 15.1 121 64-184 57-186 (671)
387 COG3204 Uncharacterized protei 97.4 0.034 7.5E-07 41.9 19.2 170 7-193 88-271 (316)
388 PF12234 Rav1p_C: RAVE protein 97.4 0.029 6.3E-07 47.5 16.1 108 118-232 35-156 (631)
389 PF14583 Pectate_lyase22: Olig 97.3 0.03 6.5E-07 44.2 15.1 137 117-257 40-200 (386)
390 PF12894 Apc4_WD40: Anaphase-p 97.3 0.0013 2.8E-08 35.0 5.4 33 155-188 12-44 (47)
391 TIGR02604 Piru_Ver_Nterm putat 97.3 0.043 9.3E-07 44.0 16.2 140 64-211 14-197 (367)
392 TIGR02604 Piru_Ver_Nterm putat 97.3 0.037 8E-07 44.3 15.5 141 113-260 14-199 (367)
393 PRK10115 protease 2; Provision 97.3 0.058 1.3E-06 46.9 17.6 113 114-231 128-254 (686)
394 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.2 0.094 2E-06 44.2 24.0 76 176-258 441-517 (527)
395 KOG3630 Nuclear pore complex, 97.2 0.0055 1.2E-07 54.0 11.0 146 65-211 102-257 (1405)
396 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0017 3.7E-08 34.5 5.1 31 63-93 11-41 (47)
397 COG3204 Uncharacterized protei 97.2 0.055 1.2E-06 40.8 19.3 189 59-258 81-297 (316)
398 PF05694 SBP56: 56kDa selenium 97.2 0.088 1.9E-06 42.3 21.5 237 20-261 22-328 (461)
399 KOG2079 Vacuolar assembly/sort 97.1 0.0016 3.4E-08 56.8 6.5 87 159-250 92-178 (1206)
400 PF14655 RAB3GAP2_N: Rab3 GTPa 97.1 0.022 4.9E-07 45.8 12.4 87 156-242 309-408 (415)
401 KOG2444 WD40 repeat protein [G 97.1 0.004 8.7E-08 44.8 7.3 105 75-185 70-178 (238)
402 PF00780 CNH: CNH domain; Int 97.0 0.089 1.9E-06 40.2 22.0 119 65-188 37-169 (275)
403 KOG3630 Nuclear pore complex, 97.0 0.0085 1.9E-07 52.9 10.2 141 113-261 101-260 (1405)
404 KOG2444 WD40 repeat protein [G 97.0 0.0046 1E-07 44.5 7.2 107 123-234 69-179 (238)
405 KOG1916 Nuclear protein, conta 97.0 0.0019 4.1E-08 55.4 5.8 177 58-237 127-328 (1283)
406 TIGR03074 PQQ_membr_DH membran 96.9 0.24 5.2E-06 43.5 22.2 163 75-239 260-484 (764)
407 PF10214 Rrn6: RNA polymerase 96.9 0.26 5.6E-06 43.7 22.5 118 65-185 147-277 (765)
408 KOG4441 Proteins containing BT 96.9 0.22 4.7E-06 42.4 18.6 193 19-235 285-502 (571)
409 PF12234 Rav1p_C: RAVE protein 96.9 0.13 2.7E-06 43.8 15.6 113 64-184 30-156 (631)
410 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.9 0.23 5E-06 41.9 22.5 156 75-237 120-338 (527)
411 PF10168 Nup88: Nuclear pore c 96.8 0.061 1.3E-06 46.7 13.5 79 65-144 86-181 (717)
412 PF10647 Gmad1: Lipoprotein Lp 96.8 0.14 3.1E-06 38.6 20.4 138 65-211 25-179 (253)
413 PRK13684 Ycf48-like protein; P 96.7 0.22 4.7E-06 39.4 18.9 152 63-230 172-329 (334)
414 COG5167 VID27 Protein involved 96.7 0.089 1.9E-06 42.9 12.6 134 38-184 491-632 (776)
415 KOG2377 Uncharacterized conser 96.6 0.097 2.1E-06 42.1 12.3 131 74-211 32-167 (657)
416 PF14870 PSII_BNR: Photosynthe 96.6 0.24 5.3E-06 38.3 22.3 140 112-259 144-290 (302)
417 PHA02713 hypothetical protein; 96.6 0.4 8.8E-06 40.8 18.5 123 38-175 273-408 (557)
418 KOG2247 WD40 repeat-containing 96.5 0.00018 3.9E-09 57.2 -2.8 140 62-211 33-173 (615)
419 PF10313 DUF2415: Uncharacteri 96.5 0.018 3.8E-07 29.7 5.4 31 155-185 1-34 (43)
420 PF05096 Glu_cyclase_2: Glutam 96.5 0.24 5.3E-06 37.2 19.6 178 66-259 47-245 (264)
421 PRK10115 protease 2; Provision 96.4 0.58 1.3E-05 41.0 22.9 110 65-183 128-254 (686)
422 PF13449 Phytase-like: Esteras 96.3 0.37 8.1E-06 37.9 16.4 148 112-260 19-230 (326)
423 PHA02790 Kelch-like protein; P 96.3 0.51 1.1E-05 39.4 19.7 192 19-235 272-473 (480)
424 PF13449 Phytase-like: Esteras 96.3 0.38 8.3E-06 37.9 18.6 147 64-211 20-228 (326)
425 KOG1897 Damage-specific DNA bi 96.3 0.76 1.7E-05 40.8 20.8 142 112-261 714-885 (1096)
426 PF10313 DUF2415: Uncharacteri 96.2 0.022 4.7E-07 29.4 4.7 31 113-143 1-34 (43)
427 COG4590 ABC-type uncharacteriz 96.2 0.11 2.3E-06 41.8 10.3 162 65-236 222-390 (733)
428 COG5167 VID27 Protein involved 96.1 0.22 4.8E-06 40.7 12.0 151 66-232 469-632 (776)
429 PF07995 GSDH: Glucose / Sorbo 96.1 0.21 4.5E-06 39.4 11.9 108 65-174 3-133 (331)
430 PRK13684 Ycf48-like protein; P 96.1 0.55 1.2E-05 37.2 22.7 139 112-260 172-318 (334)
431 PF05096 Glu_cyclase_2: Glutam 96.1 0.43 9.3E-06 35.9 18.1 118 114-241 46-166 (264)
432 KOG2377 Uncharacterized conser 96.0 0.65 1.4E-05 37.6 13.9 106 62-172 65-171 (657)
433 PHA03098 kelch-like protein; P 96.0 0.55 1.2E-05 39.8 14.8 151 19-187 343-514 (534)
434 PLN00033 photosystem II stabil 96.0 0.69 1.5E-05 37.5 17.4 146 66-229 241-396 (398)
435 PF14781 BBS2_N: Ciliary BBSom 95.8 0.32 7E-06 32.3 12.1 121 69-191 4-132 (136)
436 TIGR03074 PQQ_membr_DH membran 95.7 1.4 3.1E-05 39.0 17.7 118 75-193 194-353 (764)
437 PF07569 Hira: TUP1-like enhan 95.7 0.28 6.1E-06 36.1 10.2 70 120-190 18-101 (219)
438 PF10168 Nup88: Nuclear pore c 95.6 0.9 1.9E-05 39.8 14.3 73 113-186 85-181 (717)
439 PF14655 RAB3GAP2_N: Rab3 GTPa 95.5 0.33 7.1E-06 39.3 10.9 83 113-195 308-409 (415)
440 PHA02790 Kelch-like protein; P 95.4 1.3 2.9E-05 37.0 15.2 144 20-187 320-473 (480)
441 PF07569 Hira: TUP1-like enhan 95.4 0.11 2.4E-06 38.2 7.3 72 71-144 18-97 (219)
442 PF02333 Phytase: Phytase; In 95.4 1.1 2.5E-05 35.8 22.8 196 17-233 66-291 (381)
443 PF07995 GSDH: Glucose / Sorbo 95.2 1.2 2.6E-05 35.2 21.9 234 7-260 4-321 (331)
444 TIGR02276 beta_rpt_yvtn 40-res 95.2 0.15 3.3E-06 26.0 5.7 42 207-253 1-42 (42)
445 TIGR03606 non_repeat_PQQ dehyd 95.1 1.5 3.3E-05 36.1 15.1 114 62-175 28-166 (454)
446 PF08728 CRT10: CRT10; InterP 95.1 2 4.4E-05 37.3 15.0 155 75-231 49-245 (717)
447 PF07250 Glyoxal_oxid_N: Glyox 94.9 1.2 2.5E-05 33.4 12.2 148 38-194 47-207 (243)
448 TIGR02276 beta_rpt_yvtn 40-res 94.9 0.22 4.8E-06 25.4 5.8 40 164-205 1-41 (42)
449 PF10214 Rrn6: RNA polymerase 94.6 3.2 6.8E-05 37.1 20.8 166 61-233 77-277 (765)
450 KOG4460 Nuclear pore complex, 94.5 0.9 2E-05 37.5 10.5 76 114-189 105-203 (741)
451 TIGR03606 non_repeat_PQQ dehyd 94.4 2.2 4.8E-05 35.2 12.9 54 113-166 30-90 (454)
452 KOG2280 Vacuolar assembly/sort 94.4 1.7 3.8E-05 37.5 12.4 86 85-182 64-153 (829)
453 PF12657 TFIIIC_delta: Transcr 94.3 0.9 2E-05 32.1 9.4 30 156-185 87-122 (173)
454 KOG2247 WD40 repeat-containing 94.3 0.0055 1.2E-07 49.1 -1.9 136 116-259 38-174 (615)
455 PF08728 CRT10: CRT10; InterP 94.0 0.68 1.5E-05 40.1 9.6 118 66-183 103-245 (717)
456 PF11715 Nup160: Nucleoporin N 93.8 0.56 1.2E-05 39.9 8.9 70 123-192 157-256 (547)
457 KOG4460 Nuclear pore complex, 93.6 2.4 5.3E-05 35.2 11.4 82 65-147 105-203 (741)
458 PF12768 Rax2: Cortical protei 93.5 2.8 6E-05 32.3 13.5 117 135-253 17-145 (281)
459 KOG2280 Vacuolar assembly/sort 93.0 5.7 0.00012 34.6 16.2 55 155-209 217-271 (829)
460 COG1520 FOG: WD40-like repeat 93.0 4 8.7E-05 32.8 15.3 152 74-239 68-224 (370)
461 COG4257 Vgb Streptogramin lyas 93.0 3.1 6.8E-05 31.6 18.9 177 38-233 84-263 (353)
462 PLN02153 epithiospecifier prot 92.9 3.9 8.6E-05 32.4 21.7 163 19-189 33-230 (341)
463 PF07676 PD40: WD40-like Beta 92.6 0.58 1.3E-05 23.4 4.7 29 153-181 7-38 (39)
464 KOG1916 Nuclear protein, conta 92.5 0.34 7.4E-06 42.5 5.6 75 6-95 182-267 (1283)
465 TIGR03548 mutarot_permut cycli 92.3 4.6 9.9E-05 31.8 19.3 66 74-145 123-197 (323)
466 PRK13615 lipoprotein LpqB; Pro 92.1 6.9 0.00015 33.4 13.4 139 116-260 337-485 (557)
467 TIGR02171 Fb_sc_TIGR02171 Fibr 91.8 2 4.3E-05 38.2 9.4 79 133-212 328-413 (912)
468 PF11715 Nup160: Nucleoporin N 91.4 2.1 4.6E-05 36.5 9.3 76 73-148 156-254 (547)
469 PF12768 Rax2: Cortical protei 91.3 5.5 0.00012 30.7 13.2 118 36-162 15-144 (281)
470 KOG1520 Predicted alkaloid syn 91.3 6.4 0.00014 31.4 11.8 48 213-261 188-235 (376)
471 TIGR03547 muta_rot_YjhT mutatr 91.1 6.7 0.00014 31.2 17.7 13 38-50 86-98 (346)
472 COG1506 DAP2 Dipeptidyl aminop 90.9 10 0.00022 33.1 14.5 143 111-260 58-231 (620)
473 KOG1900 Nuclear pore complex, 90.8 8.3 0.00018 35.9 12.3 73 112-185 178-273 (1311)
474 PF07676 PD40: WD40-like Beta 90.7 1.2 2.7E-05 22.2 5.1 29 62-90 7-38 (39)
475 PF03022 MRJP: Major royal jel 90.5 6.8 0.00015 30.3 18.7 172 34-211 31-249 (287)
476 PLN02193 nitrile-specifier pro 89.9 11 0.00023 31.7 21.5 163 19-189 176-356 (470)
477 COG5290 IkappaB kinase complex 89.7 14 0.0003 32.8 13.9 91 158-256 250-348 (1243)
478 PF12657 TFIIIC_delta: Transcr 89.6 4.9 0.00011 28.4 8.5 35 199-233 87-122 (173)
479 TIGR03118 PEPCTERM_chp_1 conse 89.6 8.2 0.00018 29.9 23.0 182 64-254 77-307 (336)
480 PF14727 PHTB1_N: PTHB1 N-term 89.6 10 0.00022 31.1 16.6 147 74-231 36-203 (418)
481 PF14781 BBS2_N: Ciliary BBSom 89.5 4.7 0.0001 27.0 12.3 115 119-238 5-131 (136)
482 COG4590 ABC-type uncharacteriz 89.4 4 8.6E-05 33.4 8.4 113 73-190 278-392 (733)
483 PF14761 HPS3_N: Hermansky-Pud 89.4 6.7 0.00015 28.7 11.1 50 125-174 29-79 (215)
484 smart00564 PQQ beta-propeller 89.3 1.3 2.9E-05 21.0 4.0 25 168-192 8-32 (33)
485 PF03088 Str_synth: Strictosid 89.0 1.4 3E-05 27.2 4.6 43 218-261 31-73 (89)
486 PLN02193 nitrile-specifier pro 88.7 13 0.00029 31.1 17.3 159 20-189 230-415 (470)
487 COG5276 Uncharacterized conser 88.1 11 0.00023 29.2 14.6 197 53-261 31-230 (370)
488 PRK13613 lipoprotein LpqB; Pro 88.0 17 0.00037 31.5 13.4 142 114-260 364-522 (599)
489 TIGR02171 Fb_sc_TIGR02171 Fibr 87.8 3.3 7.1E-05 37.0 7.6 84 77-167 320-411 (912)
490 PF05787 DUF839: Bacterial pro 87.8 9.1 0.0002 32.5 10.1 57 157-213 438-517 (524)
491 KOG3616 Selective LIM binding 87.3 10 0.00022 33.4 9.9 68 63-140 14-81 (1636)
492 COG4257 Vgb Streptogramin lyas 87.1 12 0.00025 28.7 17.5 171 38-234 125-307 (353)
493 PF14727 PHTB1_N: PTHB1 N-term 87.0 16 0.00034 30.1 19.7 154 16-183 34-203 (418)
494 PF14761 HPS3_N: Hermansky-Pud 86.7 10 0.00022 27.7 8.5 42 168-211 30-73 (215)
495 PLN00033 photosystem II stabil 86.4 17 0.00036 29.8 24.6 134 115-260 241-386 (398)
496 PRK13614 lipoprotein LpqB; Pro 86.1 21 0.00046 30.7 13.3 143 114-261 344-502 (573)
497 PLN02153 epithiospecifier prot 86.0 16 0.00034 29.1 16.8 28 19-49 86-113 (341)
498 PF03088 Str_synth: Strictosid 85.7 6.4 0.00014 24.3 8.5 38 173-212 34-71 (89)
499 COG1520 FOG: WD40-like repeat 85.5 17 0.00038 29.2 19.6 192 38-242 79-278 (370)
500 PF05935 Arylsulfotrans: Aryls 85.4 21 0.00046 30.0 14.1 116 118-241 153-310 (477)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.8e-42 Score=252.14 Aligned_cols=229 Identities=18% Similarity=0.217 Sum_probs=185.2
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
+++|.|++|+|+ ...+|+|++|. .+..||+.+... ....++|...|.|++|+|||+.||+|+.
T Consensus 115 ~e~Vl~~~fsp~---g~~l~tGsGD~--------TvR~WD~~TeTp------~~t~KgH~~WVlcvawsPDgk~iASG~~ 177 (480)
T KOG0271|consen 115 GEAVLSVQFSPT---GSRLVTGSGDT--------TVRLWDLDTETP------LFTCKGHKNWVLCVAWSPDGKKIASGSK 177 (480)
T ss_pred CCcEEEEEecCC---CceEEecCCCc--------eEEeeccCCCCc------ceeecCCccEEEEEEECCCcchhhcccc
Confidence 689999999995 67899999999 888899887654 5678999999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-----CCcEEEEeccCCeEEEEEc-----------------
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-----DGSRFAAGGVDGHLRIMHW----------------- 141 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~d~~i~~~d~----------------- 141 (261)
||+|++||.+++++..+.+ ..|...|++++|.| ..++|++++.||.++|||+
T Consensus 178 dg~I~lwdpktg~~~g~~l------~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VT 251 (480)
T KOG0271|consen 178 DGSIRLWDPKTGQQIGRAL------RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVT 251 (480)
T ss_pred CCeEEEecCCCCCcccccc------cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceE
Confidence 9999999998877522211 12344555555543 3345555555555555554
Q ss_pred ------------------------cCc-----------------------------------------------------
Q 024868 142 ------------------------PSL----------------------------------------------------- 144 (261)
Q Consensus 142 ------------------------~~~----------------------------------------------------- 144 (261)
..|
T Consensus 252 CvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~ 331 (480)
T KOG0271|consen 252 CVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV 331 (480)
T ss_pred EEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence 110
Q ss_pred --------------------------eEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCC
Q 024868 145 --------------------------RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE 198 (261)
Q Consensus 145 --------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 198 (261)
+++.++.+|..-|..+.||||++++|+++.|.+|++||.++|+.+.++.+|-.
T Consensus 332 ~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~- 410 (480)
T KOG0271|consen 332 LKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVA- 410 (480)
T ss_pred hccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccc-
Confidence 01112234555789999999999999999999999999999999999998877
Q ss_pred ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 199 ~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+|+.++|+.|.+. +++++.|.++++||+++.+....+.+|...|.++.|+|||+.++.
T Consensus 411 ~VYqvawsaDsRL-----lVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~s 468 (480)
T KOG0271|consen 411 AVYQVAWSADSRL-----LVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVAS 468 (480)
T ss_pred eeEEEEeccCccE-----EEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeec
Confidence 5999999999998 799999999999999998888888899999999999999998873
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2e-41 Score=251.40 Aligned_cols=231 Identities=16% Similarity=0.180 Sum_probs=204.1
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
...|.++.|+|.. ...-+|+++.|| .+..|+.++... ...+.+|...|..++|+|+|++|++++.
T Consensus 217 ~~~v~~~~fhP~~-~~~~lat~s~Dg--------tvklw~~~~e~~------l~~l~gH~~RVs~VafHPsG~~L~Tasf 281 (459)
T KOG0272|consen 217 TSRVGAAVFHPVD-SDLNLATASADG--------TVKLWKLSQETP------LQDLEGHLARVSRVAFHPSGKFLGTASF 281 (459)
T ss_pred ccceeeEEEccCC-CccceeeeccCC--------ceeeeccCCCcc------hhhhhcchhhheeeeecCCCceeeeccc
Confidence 4678899999974 255789999999 555555555432 4568899999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
|.+-++||+.++... ...-.|...|.+++|.|||.++++|+.|..-+|||++++..+..+.+|..+|.+++|+
T Consensus 282 D~tWRlWD~~tk~El-------L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fs 354 (459)
T KOG0272|consen 282 DSTWRLWDLETKSEL-------LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFS 354 (459)
T ss_pred ccchhhcccccchhh-------HhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeEC
Confidence 999999999998752 2233467899999999999999999999999999999999999999988999999999
Q ss_pred CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc
Q 024868 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL 243 (261)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~ 243 (261)
|+|..||+|+.|++++|||++..+++.++..|.+ -|+.++|+|+..++ +++++.|+++++|..+++.+++.+.+|
T Consensus 355 PNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n-lVS~Vk~~p~~g~f----L~TasyD~t~kiWs~~~~~~~ksLaGH 429 (459)
T KOG0272|consen 355 PNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN-LVSQVKYSPQEGYF----LVTASYDNTVKIWSTRTWSPLKSLAGH 429 (459)
T ss_pred CCceEEeecCCCCcEEEeeecccccceecccccc-hhhheEecccCCeE----EEEcccCcceeeecCCCcccchhhcCC
Confidence 9999999999999999999999999999998887 49999999944442 799999999999999999999999999
Q ss_pred CcCeeEEEEeeCCCEEeC
Q 024868 244 RKPASVLSISLDGKYLAM 261 (261)
Q Consensus 244 ~~~v~~~~~s~dg~~la~ 261 (261)
.+.|.++..++|++++++
T Consensus 430 e~kV~s~Dis~d~~~i~t 447 (459)
T KOG0272|consen 430 EGKVISLDISPDSQAIAT 447 (459)
T ss_pred ccceEEEEeccCCceEEE
Confidence 999999999999999874
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.9e-41 Score=250.54 Aligned_cols=229 Identities=15% Similarity=0.200 Sum_probs=204.5
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC--CCeEEE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVC 80 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~ 80 (261)
+..||..+.|+++ ...+|+|+.+| .+.+|+...... .+.+.+|+..|.++.|+|. +..|++
T Consensus 174 d~rPis~~~fS~d---s~~laT~swsG--------~~kvW~~~~~~~------~~~l~gH~~~v~~~~fhP~~~~~~lat 236 (459)
T KOG0272|consen 174 DTRPISGCSFSRD---SKHLATGSWSG--------LVKVWSVPQCNL------LQTLRGHTSRVGAAVFHPVDSDLNLAT 236 (459)
T ss_pred CCCcceeeEeecC---CCeEEEeecCC--------ceeEeecCCcce------eEEEeccccceeeEEEccCCCccceee
Confidence 4689999999996 67999999999 667777666554 6789999999999999996 668999
Q ss_pred EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEE
Q 024868 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (261)
Q Consensus 81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~ 160 (261)
++.||++++|++.+.... .....|..+|..++|+|+|++|++++.|.+-++||++++..+....+|...|.++
T Consensus 237 ~s~Dgtvklw~~~~e~~l-------~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~i 309 (459)
T KOG0272|consen 237 ASADGTVKLWKLSQETPL-------QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSI 309 (459)
T ss_pred eccCCceeeeccCCCcch-------hhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccccccccee
Confidence 999999999999886541 2223345789999999999999999999999999999999887778888899999
Q ss_pred EEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868 161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (261)
Q Consensus 161 ~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~ 240 (261)
+|+|||.++++|+.|..-+|||+++|+++..+.+|.. +|.+++|+|+|.. +++++.|++++|||++..+.+.++
T Consensus 310 af~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~-----lATgs~Dnt~kVWDLR~r~~ly~i 383 (459)
T KOG0272|consen 310 AFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYH-----LATGSSDNTCKVWDLRMRSELYTI 383 (459)
T ss_pred EecCCCceeeccCccchhheeecccCcEEEEeccccc-ceeeEeECCCceE-----EeecCCCCcEEEeeecccccceec
Confidence 9999999999999999999999999999999999776 6999999999998 799999999999999999999999
Q ss_pred eccCcCeeEEEEee-CCCEEeC
Q 024868 241 RLLRKPASVLSISL-DGKYLAM 261 (261)
Q Consensus 241 ~~~~~~v~~~~~s~-dg~~la~ 261 (261)
..|..-|+.+.|+| .|++|++
T Consensus 384 pAH~nlVS~Vk~~p~~g~fL~T 405 (459)
T KOG0272|consen 384 PAHSNLVSQVKYSPQEGYFLVT 405 (459)
T ss_pred ccccchhhheEecccCCeEEEE
Confidence 99999999999999 6778764
No 4
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4e-38 Score=250.01 Aligned_cols=234 Identities=18% Similarity=0.241 Sum_probs=200.9
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCC-------Ccee----------------cCCeEEeeecCC
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKT-------TSVY----------------TSPLVTYVFDES 62 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-------~~~~----------------~~~~~~~~~~~~ 62 (261)
-+.|+.|+++ ..++|.|-.+... .+|.+++.. ..+. ........+-+|
T Consensus 380 ~v~ca~fSdd---ssmlA~Gf~dS~i------~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH 450 (707)
T KOG0263|consen 380 GVTCAEFSDD---SSMLACGFVDSSV------RVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH 450 (707)
T ss_pred cceeEeecCC---cchhhccccccEE------EEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence 4678888875 4588888777733 566665421 0000 011234458899
Q ss_pred CCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEcc
Q 024868 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (261)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 142 (261)
.++|....|+|+.++|+++++|+++++|.+.+..+.. ..-.|..+|.++.|+|-|-++|+++.|++.++|...
T Consensus 451 ~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V-------~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d 523 (707)
T KOG0263|consen 451 SGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV-------IYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD 523 (707)
T ss_pred CCceeeeeecccccceeeccCCcceeeeecccceeEE-------EecCCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence 9999999999999999999999999999999887522 222567899999999999999999999999999999
Q ss_pred CceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCC
Q 024868 143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD 222 (261)
Q Consensus 143 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~ 222 (261)
...+.+.+.+|...|.|+.|+|+..|+++||.|.+|++||..+|..++.+.+|.. +|.+++|||+|++ +++++.
T Consensus 524 ~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~-----LaSg~e 597 (707)
T KOG0263|consen 524 HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRY-----LASGDE 597 (707)
T ss_pred cCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCce-----Eeeccc
Confidence 8888888888888999999999999999999999999999999999999998766 7999999999999 799999
Q ss_pred CcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 223 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
||.|.+||+.+++.+..+..|.+.+.++.||.||..||+
T Consensus 598 d~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLas 636 (707)
T KOG0263|consen 598 DGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLAS 636 (707)
T ss_pred CCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEe
Confidence 999999999999999999999999999999999999985
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.9e-36 Score=213.89 Aligned_cols=234 Identities=18% Similarity=0.190 Sum_probs=200.5
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
+..|..+||+|+ .+++|+||-+. ..-+|+..+..-.........+.+|++-+.+..|-+|+ .|++++.
T Consensus 97 s~WVMtCA~sPS---g~~VAcGGLdN--------~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SG 164 (343)
T KOG0286|consen 97 SSWVMTCAYSPS---GNFVACGGLDN--------KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSG 164 (343)
T ss_pred ceeEEEEEECCC---CCeEEecCcCc--------eeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCC
Confidence 467899999996 77999998887 44555544331111223356799999999999998866 5888999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 162 (261)
|.++.+||+++++.. .....|.+.|.++.++| +++.+++|+.|+..++||++.+...+.+.+|...|.+++|
T Consensus 165 D~TCalWDie~g~~~-------~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~f 237 (343)
T KOG0286|consen 165 DMTCALWDIETGQQT-------QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRF 237 (343)
T ss_pred CceEEEEEcccceEE-------EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEE
Confidence 999999999998751 23345678999999999 9999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecC-CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (261)
Q Consensus 163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~ 241 (261)
.|+|.-+++|++|++.++||++..+.+..+.... ..+|++++||..|++ ++++..|.++.+||.-.++.+..+.
T Consensus 238 fP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRl-----Lfagy~d~~c~vWDtlk~e~vg~L~ 312 (343)
T KOG0286|consen 238 FPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRL-----LFAGYDDFTCNVWDTLKGERVGVLA 312 (343)
T ss_pred ccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccE-----EEeeecCCceeEeeccccceEEEee
Confidence 9999999999999999999999999888886432 347999999999998 6888999999999999999999999
Q ss_pred ccCcCeeEEEEeeCCCEEeC
Q 024868 242 LLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 242 ~~~~~v~~~~~s~dg~~la~ 261 (261)
+|++.|+++..+|||..|++
T Consensus 313 GHeNRvScl~~s~DG~av~T 332 (343)
T KOG0286|consen 313 GHENRVSCLGVSPDGMAVAT 332 (343)
T ss_pred ccCCeeEEEEECCCCcEEEe
Confidence 99999999999999998874
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.2e-35 Score=211.49 Aligned_cols=232 Identities=17% Similarity=0.218 Sum_probs=199.6
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
.++|+++.|.++ .+.+++++.|| ++.+||.-+..- .+.++-....|...+|+|.|+++|+|+-
T Consensus 55 ~~Ki~~~~ws~D---sr~ivSaSqDG--------klIvWDs~TtnK------~haipl~s~WVMtCA~sPSg~~VAcGGL 117 (343)
T KOG0286|consen 55 LNKIYAMDWSTD---SRRIVSASQDG--------KLIVWDSFTTNK------VHAIPLPSSWVMTCAYSPSGNFVACGGL 117 (343)
T ss_pred ccceeeeEecCC---cCeEEeeccCC--------eEEEEEcccccc------eeEEecCceeEEEEEECCCCCeEEecCc
Confidence 478999999996 67999999999 999999877653 5566667889999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
|+.+.||++........ .........|.+.+.++.|-+|+ .|++++.|.+..+||+++++.+..+.+|.+.|.+++++
T Consensus 118 dN~Csiy~ls~~d~~g~-~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~ 195 (343)
T KOG0286|consen 118 DNKCSIYPLSTRDAEGN-VRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLS 195 (343)
T ss_pred CceeEEEeccccccccc-ceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecC
Confidence 99999999986532111 11112234567889999998755 68899999999999999999999999999999999999
Q ss_pred C-CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868 164 L-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (261)
Q Consensus 164 ~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~ 242 (261)
| +++.+++|+-|+..++||++.+.+++++.+|.. .|++++|.|+|.- ++++++|++.++||++..+.+..+..
T Consensus 196 p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~a-----fatGSDD~tcRlyDlRaD~~~a~ys~ 269 (343)
T KOG0286|consen 196 PSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDA-----FATGSDDATCRLYDLRADQELAVYSH 269 (343)
T ss_pred CCCCCeEEecccccceeeeeccCcceeEeeccccc-ccceEEEccCCCe-----eeecCCCceeEEEeecCCcEEeeecc
Confidence 9 999999999999999999999999999999877 4999999999998 69999999999999999888766553
Q ss_pred c--CcCeeEEEEeeCCCEEe
Q 024868 243 L--RKPASVLSISLDGKYLA 260 (261)
Q Consensus 243 ~--~~~v~~~~~s~dg~~la 260 (261)
. ..+|++++||..|++|.
T Consensus 270 ~~~~~gitSv~FS~SGRlLf 289 (343)
T KOG0286|consen 270 DSIICGITSVAFSKSGRLLF 289 (343)
T ss_pred CcccCCceeEEEcccccEEE
Confidence 2 36899999999999885
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-35 Score=207.60 Aligned_cols=232 Identities=13% Similarity=0.175 Sum_probs=193.0
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
.+.|+.++-.+. +...++.++.|. .+..|+...... .-......+++|...|..+..++||++.++++.
T Consensus 15 ~d~Vt~la~~~~--~~~~l~sasrDk--------~ii~W~L~~dd~-~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 15 TDWVTALAIKIK--NSDILVSASRDK--------TIIVWKLTSDDI-KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW 83 (315)
T ss_pred CceEEEEEeecC--CCceEEEcccce--------EEEEEEeccCcc-ccCceeeeeeccceEecceEEccCCceEEeccc
Confidence 467888888776 467888898888 777777655432 123346678999999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecccc-CCceeEEEE
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA-HKSVLDMDF 162 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~ 162 (261)
|+.+++||+.+++.. .....|...|.+++|+||.+.|++|+.|.+|.+|++............ .+.|.++.|
T Consensus 84 D~~lrlWDl~~g~~t-------~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrf 156 (315)
T KOG0279|consen 84 DGTLRLWDLATGEST-------RRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRF 156 (315)
T ss_pred cceEEEEEecCCcEE-------EEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEE
Confidence 999999999998642 233456788999999999999999999999999998655443322222 567999999
Q ss_pred cCC--CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868 163 SLD--SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (261)
Q Consensus 163 s~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~ 240 (261)
+|+ ..+|++++.|+.|++||+++-+....+.+|.. .++.+++||||.. .++|+.||.+.+||++.++.+..+
T Consensus 157 sP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~-~v~t~~vSpDGsl-----casGgkdg~~~LwdL~~~k~lysl 230 (315)
T KOG0279|consen 157 SPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG-YVNTVTVSPDGSL-----CASGGKDGEAMLWDLNEGKNLYSL 230 (315)
T ss_pred cCCCCCcEEEEccCCceEEEEccCCcchhhccccccc-cEEEEEECCCCCE-----EecCCCCceEEEEEccCCceeEec
Confidence 997 67999999999999999999999889988876 5999999999998 789999999999999999987544
Q ss_pred eccCcCeeEEEEeeCCCEEe
Q 024868 241 RLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 241 ~~~~~~v~~~~~s~dg~~la 260 (261)
.+...|.+++|+|+.-+|+
T Consensus 231 -~a~~~v~sl~fspnrywL~ 249 (315)
T KOG0279|consen 231 -EAFDIVNSLCFSPNRYWLC 249 (315)
T ss_pred -cCCCeEeeEEecCCceeEe
Confidence 4678999999999987775
No 8
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-35 Score=223.87 Aligned_cols=231 Identities=17% Similarity=0.242 Sum_probs=199.3
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
..|++++|+.+ +.++|+|..+| .+..|+..+.. ...+..|.++|.++.|+..|++|++++.|
T Consensus 236 kdVT~L~Wn~~---G~~LatG~~~G--------~~riw~~~G~l-------~~tl~~HkgPI~slKWnk~G~yilS~~vD 297 (524)
T KOG0273|consen 236 KDVTSLDWNND---GTLLATGSEDG--------EARIWNKDGNL-------ISTLGQHKGPIFSLKWNKKGTYILSGGVD 297 (524)
T ss_pred CCcceEEecCC---CCeEEEeecCc--------EEEEEecCchh-------hhhhhccCCceEEEEEcCCCCEEEeccCC
Confidence 56899999985 67999999999 88888887765 45688999999999999999999999999
Q ss_pred CcEEEEEEeCCcccccee----------------------------------eeeCCCCCCCCCeEEEEEeeCCcEEEEe
Q 024868 85 GGCKLFEVYGGATDINLL----------------------------------AKKMPPLQDAGPQKCLSFSVDGSRFAAG 130 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 130 (261)
+++.+||..++....... .+......|+++|.++.|+|.|.+|+++
T Consensus 298 ~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~ 377 (524)
T KOG0273|consen 298 GTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASC 377 (524)
T ss_pred ccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEe
Confidence 999999997665411110 0112233477999999999999999999
Q ss_pred ccCCeEEEEEccCceEEeeccccCCceeEEEEcCCC---------CEEEEecCCCcEEEEEccCCcEEEEEeecCCCceE
Q 024868 131 GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS---------EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIE 201 (261)
Q Consensus 131 ~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 201 (261)
+.|++++||..........+..|...|+.+.|+|+| ..+++++.|++|++||+..+.++..+..|.. +|.
T Consensus 378 SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~-pVy 456 (524)
T KOG0273|consen 378 SDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE-PVY 456 (524)
T ss_pred cCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC-ceE
Confidence 999999999998888878888888899999999965 4789999999999999999999999988766 799
Q ss_pred EEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 202 ~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
+++|+|+|++ +++|+.||.|.+|+.++++..+... ..+.|..++|+.+|.+|.
T Consensus 457 svafS~~g~y-----lAsGs~dg~V~iws~~~~~l~~s~~-~~~~Ifel~Wn~~G~kl~ 509 (524)
T KOG0273|consen 457 SVAFSPNGRY-----LASGSLDGCVHIWSTKTGKLVKSYQ-GTGGIFELCWNAAGDKLG 509 (524)
T ss_pred EEEecCCCcE-----EEecCCCCeeEeccccchheeEeec-CCCeEEEEEEcCCCCEEE
Confidence 9999999999 7999999999999999999887655 446799999999998875
No 9
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.3e-35 Score=235.90 Aligned_cols=228 Identities=17% Similarity=0.217 Sum_probs=194.8
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
.+||||.+.|+|+ .+++++++.|. .+..|...+... ....++|..+|..+.|+|-|-++|+++
T Consensus 450 H~GPVyg~sFsPd---~rfLlScSED~--------svRLWsl~t~s~------~V~y~GH~~PVwdV~F~P~GyYFatas 512 (707)
T KOG0263|consen 450 HSGPVYGCSFSPD---RRFLLSCSEDS--------SVRLWSLDTWSC------LVIYKGHLAPVWDVQFAPRGYYFATAS 512 (707)
T ss_pred CCCceeeeeeccc---ccceeeccCCc--------ceeeeeccccee------EEEecCCCcceeeEEecCCceEEEecC
Confidence 5799999999996 67999999999 666666666554 456789999999999999999999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 162 (261)
.|++.++|........ .....|-..|.|+.|+|+..++++|+.|.++++||+.+|..++.+.+|.++|.+++|
T Consensus 513 ~D~tArLWs~d~~~Pl-------RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~ 585 (707)
T KOG0263|consen 513 HDQTARLWSTDHNKPL-------RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAF 585 (707)
T ss_pred CCceeeeeecccCCch-------hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEE
Confidence 9999999999876541 222345678999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe-------
Q 024868 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN------- 235 (261)
Q Consensus 163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~------- 235 (261)
||+|++|++|+.|+.|.+||+.+++.+..+.+|.+ .|.++.|+.+|.. +++++.|++|++||+..-.
T Consensus 586 Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~v-----Lasgg~DnsV~lWD~~~~~~~~~~~~ 659 (707)
T KOG0263|consen 586 SPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNV-----LASGGADNSVRLWDLTKVIELLNLGH 659 (707)
T ss_pred cCCCceEeecccCCcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCE-----EEecCCCCeEEEEEchhhcccccccc
Confidence 99999999999999999999999999999999955 6999999999998 7999999999999986321
Q ss_pred -----------------EEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 236 -----------------KIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 236 -----------------~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
.+..+.....+|..+.|...+-.|+
T Consensus 660 ~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~ 701 (707)
T KOG0263|consen 660 ISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLA 701 (707)
T ss_pred cccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEE
Confidence 2334444556788888887665444
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.8e-35 Score=205.98 Aligned_cols=226 Identities=15% Similarity=0.162 Sum_probs=186.1
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
+..|..++.+++ .++.++++.|+ .+..||..+++. .+.+.+|...|.+++|++|.+.+++|+.
T Consensus 63 sH~v~dv~~s~d---g~~alS~swD~--------~lrlWDl~~g~~------t~~f~GH~~dVlsva~s~dn~qivSGSr 125 (315)
T KOG0279|consen 63 SHFVSDVVLSSD---GNFALSASWDG--------TLRLWDLATGES------TRRFVGHTKDVLSVAFSTDNRQIVSGSR 125 (315)
T ss_pred ceEecceEEccC---CceEEeccccc--------eEEEEEecCCcE------EEEEEecCCceEEEEecCCCceeecCCC
Confidence 456777778875 67889999999 999999988765 6789999999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC--CcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEE
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~ 161 (261)
|.+|++|+...... .. .....+.+.|.++.|+|+ ..+|++++.|+++++||+++.+....+.+|.+.+..+.
T Consensus 126 DkTiklwnt~g~ck-~t-----~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~ 199 (315)
T KOG0279|consen 126 DKTIKLWNTLGVCK-YT-----IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVT 199 (315)
T ss_pred cceeeeeeecccEE-EE-----EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEE
Confidence 99999999987643 11 111222678999999997 67899999999999999999998888888889999999
Q ss_pred EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (261)
Q Consensus 162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~ 241 (261)
+||||.+.++|+.||.+.+||++.++.+..+.. ...|.+++|+|+.-+ ++. ..+..|+|||+.++..+..+.
T Consensus 200 vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a--~~~v~sl~fspnryw-----L~~-at~~sIkIwdl~~~~~v~~l~ 271 (315)
T KOG0279|consen 200 VSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA--FDIVNSLCFSPNRYW-----LCA-ATATSIKIWDLESKAVVEELK 271 (315)
T ss_pred ECCCCCEEecCCCCceEEEEEccCCceeEeccC--CCeEeeEEecCCcee-----Eee-ccCCceEEEeccchhhhhhcc
Confidence 999999999999999999999999999877763 346999999998765 222 333459999999887765443
Q ss_pred cc---------CcCeeEEEEeeCCCEEe
Q 024868 242 LL---------RKPASVLSISLDGKYLA 260 (261)
Q Consensus 242 ~~---------~~~v~~~~~s~dg~~la 260 (261)
.. .....+++|++||+.|.
T Consensus 272 ~d~~g~s~~~~~~~clslaws~dG~tLf 299 (315)
T KOG0279|consen 272 LDGIGPSSKAGDPICLSLAWSADGQTLF 299 (315)
T ss_pred ccccccccccCCcEEEEEEEcCCCcEEE
Confidence 22 12356789999999875
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.8e-34 Score=200.29 Aligned_cols=227 Identities=12% Similarity=0.174 Sum_probs=187.0
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
+.|..+...|+ ..++|+|+.. +|..||..+.. +.+...+.+|+..|+++.|..+|+++++|++|
T Consensus 41 sqVNrLeiTpd---k~~LAaa~~q---------hvRlyD~~S~n----p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD 104 (311)
T KOG0315|consen 41 SQVNRLEITPD---KKDLAAAGNQ---------HVRLYDLNSNN----PNPVATFEGHTKNVTAVGFQCDGRWMYTGSED 104 (311)
T ss_pred cceeeEEEcCC---cchhhhccCC---------eeEEEEccCCC----CCceeEEeccCCceEEEEEeecCeEEEecCCC
Confidence 44566666664 4455555432 57788887665 23466789999999999999999999999999
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecc-ccCCceeEEEEc
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP-KAHKSVLDMDFS 163 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~s 163 (261)
|+++|||++...+ ...+.+..+|+++..+|+...|+++..+|.|++||+........+. .....|.++...
T Consensus 105 gt~kIWdlR~~~~--------qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~ 176 (311)
T KOG0315|consen 105 GTVKIWDLRSLSC--------QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVM 176 (311)
T ss_pred ceEEEEeccCccc--------chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEc
Confidence 9999999998654 5566778999999999999999999999999999998775544443 333489999999
Q ss_pred CCCCEEEEecCCCcEEEEEccCC------cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC-eE
Q 024868 164 LDSEFLATTSTDGSARIWKTEDG------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-NK 236 (261)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~ 236 (261)
|||.+++.+...|..++|++-+. +++..++.|.. .+..+.+|||+++ +++++.|.+++||+.++. +.
T Consensus 177 ~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~il~C~lSPd~k~-----lat~ssdktv~iwn~~~~~kl 250 (311)
T KOG0315|consen 177 PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNG-HILRCLLSPDVKY-----LATCSSDKTVKIWNTDDFFKL 250 (311)
T ss_pred CCCcEEEEecCCccEEEEEccCCCccccceEhhheecccc-eEEEEEECCCCcE-----EEeecCCceEEEEecCCceee
Confidence 99999999999999999998754 35566777766 4888899999999 799999999999999987 55
Q ss_pred EeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 237 IGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 237 ~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
...+..|+..+++.+||.||+||++
T Consensus 251 e~~l~gh~rWvWdc~FS~dg~YlvT 275 (311)
T KOG0315|consen 251 ELVLTGHQRWVWDCAFSADGEYLVT 275 (311)
T ss_pred EEEeecCCceEEeeeeccCccEEEe
Confidence 5567788889999999999999974
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.3e-35 Score=220.18 Aligned_cols=242 Identities=18% Similarity=0.247 Sum_probs=188.9
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEee--ecC----CCCCceEEEECCCCC
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYV--FDE----SEGDPMTIAVNPSGD 76 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~----~~~~v~~~~~~~~~~ 76 (261)
...+|++++|+|.. ..++++|+++... ++|..-.+...........+. ..+ .+..|++++|+.+|.
T Consensus 177 ~~~~V~~~~WnP~~--~~llasg~~~s~a------ri~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~ 248 (524)
T KOG0273|consen 177 HESEVFICAWNPLR--DGLLASGSGDSTA------RIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT 248 (524)
T ss_pred CCCceEEEecCchh--hhhhhccCCccce------eeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC
Confidence 45789999999963 4578888877733 333332211111110000111 111 235799999999999
Q ss_pred eEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE---------
Q 024868 77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII--------- 147 (261)
Q Consensus 77 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~--------- 147 (261)
.||+|+.||.+++|+...... ...-.|+++|.++.|+.+|.+|++++.|+++.+||..++...
T Consensus 249 ~LatG~~~G~~riw~~~G~l~--------~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~ 320 (524)
T KOG0273|consen 249 LLATGSEDGEARIWNKDGNLI--------STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP 320 (524)
T ss_pred eEEEeecCcEEEEEecCchhh--------hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC
Confidence 999999999999999987653 334457899999999999999999999999999998544321
Q ss_pred --------------------------------eeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeec
Q 024868 148 --------------------------------LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN 195 (261)
Q Consensus 148 --------------------------------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 195 (261)
..+.+|+++|.++.|+|.|.+|+++++|++++||.+........+..|
T Consensus 321 ~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H 400 (524)
T KOG0273|consen 321 ALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH 400 (524)
T ss_pred ccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhh
Confidence 233467889999999999999999999999999999999998999888
Q ss_pred CCCceEEEEEecCCCcc----eEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 196 SDEKIELCRFSKDGTKP----FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 196 ~~~~v~~~~~~p~~~~~----~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
.. .|..+.|+|.|... .=..+++++.|++|++||+..+.++..+..|..+|++++|||+|+|||+
T Consensus 401 sk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAs 469 (524)
T KOG0273|consen 401 SK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLAS 469 (524)
T ss_pred cc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEe
Confidence 76 49999999976420 0011588899999999999999999999999999999999999999984
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.3e-36 Score=221.89 Aligned_cols=223 Identities=16% Similarity=0.203 Sum_probs=194.3
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
.-+|..+.|.|+ ++.+++|+..| +.-.|+...-.+ +..++.|...|.++.|++++.++++|+.
T Consensus 96 kc~V~~v~WtPe---GRRLltgs~SG--------EFtLWNg~~fnF------EtilQaHDs~Vr~m~ws~~g~wmiSgD~ 158 (464)
T KOG0284|consen 96 KCPVNVVRWTPE---GRRLLTGSQSG--------EFTLWNGTSFNF------ETILQAHDSPVRTMKWSHNGTWMISGDK 158 (464)
T ss_pred ccceeeEEEcCC---CceeEeecccc--------cEEEecCceeeH------HHHhhhhcccceeEEEccCCCEEEEcCC
Confidence 358899999995 56788888888 777777754443 5568899999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCC-CCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 162 (261)
+|.|++|+..-... ..... |...|++++|+|+...|++++.||+|+|||....+....+.+|...|.+++|
T Consensus 159 gG~iKyWqpnmnnV--------k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdW 230 (464)
T KOG0284|consen 159 GGMIKYWQPNMNNV--------KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDW 230 (464)
T ss_pred CceEEecccchhhh--------HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceecc
Confidence 99999999876542 11222 3489999999999999999999999999999888776677777778999999
Q ss_pred cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (261)
Q Consensus 163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~ 242 (261)
+|...+|++++.|+.|++||.++++++.++..|.. .|..+.|+|++++ +++++.|..+++||+++.+.+..+.+
T Consensus 231 HP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~-----Llt~skD~~~kv~DiR~mkEl~~~r~ 304 (464)
T KOG0284|consen 231 HPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNW-----LLTGSKDQSCKVFDIRTMKELFTYRG 304 (464)
T ss_pred CCccceeEEccCCceeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCe-----eEEccCCceEEEEehhHhHHHHHhhc
Confidence 99999999999999999999999999999998877 4999999999988 79999999999999998888888899
Q ss_pred cCcCeeEEEEeeCCC
Q 024868 243 LRKPASVLSISLDGK 257 (261)
Q Consensus 243 ~~~~v~~~~~s~dg~ 257 (261)
|...+.+++|+|-..
T Consensus 305 Hkkdv~~~~WhP~~~ 319 (464)
T KOG0284|consen 305 HKKDVTSLTWHPLNE 319 (464)
T ss_pred chhhheeeccccccc
Confidence 999999999999544
No 14
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=9.5e-33 Score=202.00 Aligned_cols=229 Identities=15% Similarity=0.155 Sum_probs=194.6
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
...+|++++.+| +.+++++||+|. ..+.|+..++.+ ...+.+|.+.|+++.|+.+|.+||+|+
T Consensus 63 H~~svFavsl~P---~~~l~aTGGgDD--------~AflW~~~~ge~------~~eltgHKDSVt~~~FshdgtlLATGd 125 (399)
T KOG0296|consen 63 HTDSVFAVSLHP---NNNLVATGGGDD--------LAFLWDISTGEF------AGELTGHKDSVTCCSFSHDGTLLATGD 125 (399)
T ss_pred cCCceEEEEeCC---CCceEEecCCCc--------eEEEEEccCCcc------eeEecCCCCceEEEEEccCceEEEecC
Confidence 467899999999 378999999999 999999988886 778999999999999999999999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 162 (261)
.+|.|+||+..++.....+. ..-..+.-+.|+|-+..|++|+.||.+.+|.+.++...+.+.+|..++++=.|
T Consensus 126 msG~v~v~~~stg~~~~~~~-------~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f 198 (399)
T KOG0296|consen 126 MSGKVLVFKVSTGGEQWKLD-------QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEF 198 (399)
T ss_pred CCccEEEEEcccCceEEEee-------cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccc
Confidence 99999999999987633332 22456788999999999999999999999999987776777888889999999
Q ss_pred cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecC----------------------------------------------
Q 024868 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS---------------------------------------------- 196 (261)
Q Consensus 163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------------------------------------------- 196 (261)
.|+|+.++++..||+|++||+++++++..+....
T Consensus 199 ~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l 278 (399)
T KOG0296|consen 199 IPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPEL 278 (399)
T ss_pred cCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccc
Confidence 9999999999999999999999888766654100
Q ss_pred ------------------------------------------------CCceEEEEEecCCCcceEEEEEeeCCCcEEEE
Q 024868 197 ------------------------------------------------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAV 228 (261)
Q Consensus 197 ------------------------------------------------~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~ 228 (261)
..+|..+.|.+ ..+ +++++.+|.|+.
T Consensus 279 ~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~-----l~t~c~~g~v~~ 352 (399)
T KOG0296|consen 279 KPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDY-----LLTACANGKVRQ 352 (399)
T ss_pred cccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cch-----heeeccCceEEe
Confidence 01133445544 333 577889999999
Q ss_pred EECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 229 YDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 229 ~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
||.++|+++..+.+|...|.+++++|+++++++
T Consensus 353 wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT 385 (399)
T KOG0296|consen 353 WDARTGQLKFTYTGHQMGILDFALSPQKRLVVT 385 (399)
T ss_pred eeccccceEEEEecCchheeEEEEcCCCcEEEE
Confidence 999999999999999999999999999998864
No 15
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.9e-33 Score=223.07 Aligned_cols=231 Identities=16% Similarity=0.260 Sum_probs=191.8
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
...|+|+.|+++ +..++.+..++ .+..|+...... .....+.+|...|.+++|+|+++++++++.
T Consensus 159 ~~sv~~~~fs~~---g~~l~~~~~~~--------~i~~~~~~~~~~----~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~ 223 (456)
T KOG0266|consen 159 CPSVTCVDFSPD---GRALAAASSDG--------LIRIWKLEGIKS----NLLRELSGHTRGVSDVAFSPDGSYLLSGSD 223 (456)
T ss_pred cCceEEEEEcCC---CCeEEEccCCC--------cEEEeecccccc----hhhccccccccceeeeEECCCCcEEEEecC
Confidence 467899999996 45688888888 677777644441 114456889999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
|+++++||+....... .....|...|++++|+|+++++++|+.|++|++||+++++....+..|.+.|.+++|+
T Consensus 224 D~tiriwd~~~~~~~~------~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~ 297 (456)
T KOG0266|consen 224 DKTLRIWDLKDDGRNL------KTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFS 297 (456)
T ss_pred CceEEEeeccCCCeEE------EEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEEC
Confidence 9999999994432211 2223567899999999999999999999999999999999998999999999999999
Q ss_pred CCCCEEEEecCCCcEEEEEccCCc--EEEEEeecCCC-ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868 164 LDSEFLATTSTDGSARIWKTEDGV--AWTFLTRNSDE-KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (261)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~-~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~ 240 (261)
+++++|++++.|+.|+|||+.+++ +...+..+... +++.++|+|++++ ++++..|+.+++||+..++.+...
T Consensus 298 ~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~-----ll~~~~d~~~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 298 PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY-----LLSASLDRTLKLWDLRSGKSVGTY 372 (456)
T ss_pred CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE-----EEEecCCCeEEEEEccCCcceeee
Confidence 999999999999999999999999 56777766655 6999999999999 788999999999999999888777
Q ss_pred eccCcC---eeEEEEeeCCCEEe
Q 024868 241 RLLRKP---ASVLSISLDGKYLA 260 (261)
Q Consensus 241 ~~~~~~---v~~~~~s~dg~~la 260 (261)
..|... +.+...+++|+++.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~i~ 395 (456)
T KOG0266|consen 373 TGHSNLVRCIFSPTLSTGGKLIY 395 (456)
T ss_pred cccCCcceeEecccccCCCCeEE
Confidence 777654 33445567777765
No 16
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-34 Score=210.77 Aligned_cols=187 Identities=18% Similarity=0.259 Sum_probs=164.9
Q ss_pred EEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC
Q 024868 55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (261)
Q Consensus 55 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 134 (261)
....+.+|.++|.+++|+|+|..|++|+.|.++++||+.+..+ ....-.|...|.+++|+|||+.||+|+.||
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp-------~~t~KgH~~WVlcvawsPDgk~iASG~~dg 179 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP-------LFTCKGHKNWVLCVAWSPDGKKIASGSKDG 179 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc-------ceeecCCccEEEEEEECCCcchhhccccCC
Confidence 3457889999999999999999999999999999999998764 122334678999999999999999999999
Q ss_pred eEEEEEccCceEEee-ccccCCceeEEEEcC-----CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecC
Q 024868 135 HLRIMHWPSLRIILD-EPKAHKSVLDMDFSL-----DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD 208 (261)
Q Consensus 135 ~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~ 208 (261)
+|++||.++++++.. +.+|...|.+++|.| ..++||+++.||.++|||+..++++..+.+|.. +|+|++|--+
T Consensus 180 ~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~ 258 (480)
T KOG0271|consen 180 SIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGE 258 (480)
T ss_pred eEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCcc-ceEEEEEcCC
Confidence 999999999887654 455667899999976 567999999999999999999999999999877 6999999766
Q ss_pred CCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeC
Q 024868 209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD 255 (261)
Q Consensus 209 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~d 255 (261)
|- +++++.|++|++|+...|.....+.+|...|+.++.+.|
T Consensus 259 gl------iySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTd 299 (480)
T KOG0271|consen 259 GL------IYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTD 299 (480)
T ss_pred ce------EEecCCCceEEEEEccchhHHHhhcccchheeeeeccch
Confidence 64 599999999999999999999899999999999998854
No 17
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.8e-32 Score=214.89 Aligned_cols=228 Identities=15% Similarity=0.223 Sum_probs=185.6
Q ss_pred CceeeEEEEEeeCCcceEEEEecCC-CCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSS-RASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
..+|..++|+.. +..+|.|+.. | .+-||.|.. ... ....++|...+.+++++|||+++++|+
T Consensus 307 ~~~I~t~~~N~t---GDWiA~g~~klg------QLlVweWqs--EsY------VlKQQgH~~~i~~l~YSpDgq~iaTG~ 369 (893)
T KOG0291|consen 307 DQKILTVSFNST---GDWIAFGCSKLG------QLLVWEWQS--ESY------VLKQQGHSDRITSLAYSPDGQLIATGA 369 (893)
T ss_pred cceeeEEEeccc---CCEEEEcCCccc------eEEEEEeec--cce------eeeccccccceeeEEECCCCcEEEecc
Confidence 468888889875 5588887764 4 234555544 333 345778999999999999999999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCC-ceeEEE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMD 161 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~ 161 (261)
+||+|+|||..++-+. .....|...|+.+.|+..|+.+++++-||+|+.||+.....-+.+..... ...+++
T Consensus 370 eDgKVKvWn~~SgfC~-------vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscva 442 (893)
T KOG0291|consen 370 EDGKVKVWNTQSGFCF-------VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVA 442 (893)
T ss_pred CCCcEEEEeccCceEE-------EEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEE
Confidence 9999999999998762 22334678999999999999999999999999999988877555544333 577899
Q ss_pred EcCCCCEEEEecCCC-cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868 162 FSLDSEFLATTSTDG-SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (261)
Q Consensus 162 ~s~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~ 240 (261)
..|.|..+.+|+.|. .|.+|++++|+.+..+.+|.+ ||.+++|+|++.. +++++.|.+|++||+-........
T Consensus 443 vD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEg-PVs~l~f~~~~~~-----LaS~SWDkTVRiW~if~s~~~vEt 516 (893)
T KOG0291|consen 443 VDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEG-PVSGLSFSPDGSL-----LASGSWDKTVRIWDIFSSSGTVET 516 (893)
T ss_pred EcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCC-cceeeEEccccCe-----EEeccccceEEEEEeeccCceeee
Confidence 999999999999875 699999999999999998866 7999999999998 799999999999998654322223
Q ss_pred eccCcCeeEEEEeeCCCEEeC
Q 024868 241 RLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 241 ~~~~~~v~~~~~s~dg~~la~ 261 (261)
......+..++|+|||+-||+
T Consensus 517 l~i~sdvl~vsfrPdG~elaV 537 (893)
T KOG0291|consen 517 LEIRSDVLAVSFRPDGKELAV 537 (893)
T ss_pred EeeccceeEEEEcCCCCeEEE
Confidence 345678999999999999885
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8e-34 Score=210.39 Aligned_cols=229 Identities=13% Similarity=0.163 Sum_probs=196.6
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCC-CCCceEEEECCCCCeEEEE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-EGDPMTIAVNPSGDDFVCS 81 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~ 81 (261)
...||.++.|+++ ...+++|..+| .|..|++.-..+ .....| ...|.+++|+|+...++++
T Consensus 137 HDs~Vr~m~ws~~---g~wmiSgD~gG--------~iKyWqpnmnnV-------k~~~ahh~eaIRdlafSpnDskF~t~ 198 (464)
T KOG0284|consen 137 HDSPVRTMKWSHN---GTWMISGDKGG--------MIKYWQPNMNNV-------KIIQAHHAEAIRDLAFSPNDSKFLTC 198 (464)
T ss_pred hcccceeEEEccC---CCEEEEcCCCc--------eEEecccchhhh-------HHhhHhhhhhhheeccCCCCceeEEe
Confidence 4579999999996 67899999999 788888766553 234444 4899999999998999999
Q ss_pred ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEE
Q 024868 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (261)
Q Consensus 82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~ 161 (261)
++||+|+|||....+.. .....|.-.|.+++|+|...+|++++.|..|++||.+++.++..+..|...|..+.
T Consensus 199 SdDg~ikiWdf~~~kee-------~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~ 271 (464)
T KOG0284|consen 199 SDDGTIKIWDFRMPKEE-------RVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVK 271 (464)
T ss_pred cCCCeEEEEeccCCchh-------heeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEE
Confidence 99999999999876642 22234556899999999999999999999999999999999998888889999999
Q ss_pred EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee-
Q 024868 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK- 240 (261)
Q Consensus 162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~- 240 (261)
|+|++++|++++.|..++++|+++.+.++++.+|... ++++.|+|-..-+ +.+++.||.|..|.+...+++..+
T Consensus 272 f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkd-v~~~~WhP~~~~l----ftsgg~Dgsvvh~~v~~~~p~~~i~ 346 (464)
T KOG0284|consen 272 FNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKD-VTSLTWHPLNESL----FTSGGSDGSVVHWVVGLEEPLGEIP 346 (464)
T ss_pred EcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhh-heeeccccccccc----eeeccCCCceEEEeccccccccCCC
Confidence 9999999999999999999999999989999988774 9999999988875 588999999999999855655443
Q ss_pred eccCcCeeEEEEeeCCCEEeC
Q 024868 241 RLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 241 ~~~~~~v~~~~~s~dg~~la~ 261 (261)
..|...|++++|+|=|-.||+
T Consensus 347 ~AHd~~iwsl~~hPlGhil~t 367 (464)
T KOG0284|consen 347 PAHDGEIWSLAYHPLGHILAT 367 (464)
T ss_pred cccccceeeeeccccceeEee
Confidence 367889999999999988874
No 19
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-32 Score=201.56 Aligned_cols=233 Identities=15% Similarity=0.144 Sum_probs=202.5
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
.+|+.+-|+|. ..++++++.+. .|..||..++++ ...+++|++.+.+++|+..|+++++++.|
T Consensus 109 ~~vt~v~~hp~---~~~v~~as~d~--------tikv~D~~tg~~------e~~LrGHt~sv~di~~~a~Gk~l~tcSsD 171 (406)
T KOG0295|consen 109 SSVTRVIFHPS---EALVVSASEDA--------TIKVFDTETGEL------ERSLRGHTDSVFDISFDASGKYLATCSSD 171 (406)
T ss_pred cceeeeeeccC---ceEEEEecCCc--------eEEEEEccchhh------hhhhhccccceeEEEEecCccEEEecCCc
Confidence 57888888885 56888888888 999999999987 67899999999999999999999999999
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcC
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL 164 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~ 164 (261)
-.+++||........ .....|...|.++.|-|.|.+|++++.|.+|+.|++.++..+..+.+|...|..++.+.
T Consensus 172 l~~~LWd~~~~~~c~------ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~ 245 (406)
T KOG0295|consen 172 LSAKLWDFDTFFRCI------KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ 245 (406)
T ss_pred cchhheeHHHHHHHH------HHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC
Confidence 889999998743211 22334567899999999999999999999999999999999999999989999999999
Q ss_pred CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceE----------EEEEeeCCCcEEEEEECCCC
Q 024868 165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL----------FCTVQRGDKALLAVYDISTW 234 (261)
Q Consensus 165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~----------~~~~~~~~d~~i~~~d~~~~ 234 (261)
||.++++++.|.++++|-+.++++...+..|.. +|.+++|.|...+.-+ -.+.+++.|++|++||+.++
T Consensus 246 DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh-~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg 324 (406)
T KOG0295|consen 246 DGTIIASCSNDQTLRVWVVATKQCKAELREHEH-PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG 324 (406)
T ss_pred CeeEEEecCCCceEEEEEeccchhhhhhhcccc-ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC
Confidence 999999999999999999999988888887755 7999999885322000 01688999999999999999
Q ss_pred eEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 235 NKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 235 ~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
.++.++.+|...|.+++|+|.|+||++
T Consensus 325 ~cL~tL~ghdnwVr~~af~p~Gkyi~S 351 (406)
T KOG0295|consen 325 MCLFTLVGHDNWVRGVAFSPGGKYILS 351 (406)
T ss_pred eEEEEEecccceeeeeEEcCCCeEEEE
Confidence 999999999999999999999999974
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.8e-32 Score=217.34 Aligned_cols=229 Identities=17% Similarity=0.215 Sum_probs=194.6
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCC-CCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPK-TTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
...|.+++|+|++ .++++++.|. .+++||.. .... ...+.+|...|++++|+|+++++++|+
T Consensus 203 ~~~v~~~~fs~d~---~~l~s~s~D~--------tiriwd~~~~~~~------~~~l~gH~~~v~~~~f~p~g~~i~Sgs 265 (456)
T KOG0266|consen 203 TRGVSDVAFSPDG---SYLLSGSDDK--------TLRIWDLKDDGRN------LKTLKGHSTYVTSVAFSPDGNLLVSGS 265 (456)
T ss_pred ccceeeeEECCCC---cEEEEecCCc--------eEEEeeccCCCeE------EEEecCCCCceEEEEecCCCCEEEEec
Confidence 4679999999974 4999999999 89999983 3333 667889999999999999999999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE--EeeccccCC--cee
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHK--SVL 158 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~--~v~ 158 (261)
.|++|++||++++.+. .....|.+.|.+++|++++++|++++.|+.|++||+.++.. ...+..+.. ++.
T Consensus 266 ~D~tvriWd~~~~~~~-------~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 338 (456)
T KOG0266|consen 266 DDGTVRIWDVRTGECV-------RKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVT 338 (456)
T ss_pred CCCcEEEEeccCCeEE-------EeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCcee
Confidence 9999999999996652 22234567999999999999999999999999999999883 344444443 589
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCC--ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868 159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE--KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (261)
Q Consensus 159 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~ 236 (261)
++.|+|++.++++++.|+.+++||+..+.....+..|... .+.+...++.+++ +.+++.|+.|++||+.++..
T Consensus 339 ~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----i~sg~~d~~v~~~~~~s~~~ 413 (456)
T KOG0266|consen 339 SVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKL-----IYSGSEDGSVYVWDSSSGGI 413 (456)
T ss_pred EEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCe-----EEEEeCCceEEEEeCCccch
Confidence 9999999999999999999999999999999998888775 3445556778888 79999999999999999888
Q ss_pred Eeeeecc-CcCeeEEEEeeCCCEEeC
Q 024868 237 IGHKRLL-RKPASVLSISLDGKYLAM 261 (261)
Q Consensus 237 ~~~~~~~-~~~v~~~~~s~dg~~la~ 261 (261)
+..+..| ...+..+.++|..+++++
T Consensus 414 ~~~l~~h~~~~~~~~~~~~~~~~~~s 439 (456)
T KOG0266|consen 414 LQRLEGHSKAAVSDLSSHPTENLIAS 439 (456)
T ss_pred hhhhcCCCCCceeccccCCCcCeeee
Confidence 8888888 788899999999888763
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.6e-31 Score=182.94 Aligned_cols=219 Identities=19% Similarity=0.260 Sum_probs=181.7
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
.-|+.+.|..+ .....+|+.|| .+.+||...... .. .-.|..+|+++..+|+...|+++..+
T Consensus 84 kNVtaVgF~~d---grWMyTgseDg--------t~kIWdlR~~~~------qR-~~~~~spVn~vvlhpnQteLis~dqs 145 (311)
T KOG0315|consen 84 KNVTAVGFQCD---GRWMYTGSEDG--------TVKIWDLRSLSC------QR-NYQHNSPVNTVVLHPNQTELISGDQS 145 (311)
T ss_pred CceEEEEEeec---CeEEEecCCCc--------eEEEEeccCccc------ch-hccCCCCcceEEecCCcceEEeecCC
Confidence 45788888875 67899999999 888888877443 22 33467999999999999999999999
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCce------EEeeccccCCcee
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR------IILDEPKAHKSVL 158 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~------~~~~~~~~~~~v~ 158 (261)
|.|++||+....+...+.. .....|.++...|||++++.+...|..++|++.+.. ++.++..|.+.+.
T Consensus 146 g~irvWDl~~~~c~~~liP------e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il 219 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELIP------EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHIL 219 (311)
T ss_pred CcEEEEEccCCccccccCC------CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEE
Confidence 9999999998765333222 124689999999999999999999999999986543 3455667778899
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEEccCC-cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEE
Q 024868 159 DMDFSLDSEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI 237 (261)
Q Consensus 159 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~ 237 (261)
.+.+|||+++|++++.|.+++||+.++. +....+.+|.. .++.++||.||+| +++++.|+.+++||++.++.+
T Consensus 220 ~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~r-WvWdc~FS~dg~Y-----lvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 220 RCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQR-WVWDCAFSADGEY-----LVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred EEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCc-eEEeeeeccCccE-----EEecCCCCceeecccccCcee
Confidence 9999999999999999999999999987 55566666654 8999999999999 799999999999999999999
Q ss_pred eeeeccCcCeeEEEEe
Q 024868 238 GHKRLLRKPASVLSIS 253 (261)
Q Consensus 238 ~~~~~~~~~v~~~~~s 253 (261)
....+|.....+++..
T Consensus 294 ~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 294 RQYQGHHKAAVCVALN 309 (311)
T ss_pred eecCCcccccEEEEee
Confidence 8888887776666653
No 22
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.7e-30 Score=197.09 Aligned_cols=228 Identities=21% Similarity=0.319 Sum_probs=191.4
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
...+|++++|+|+ ..++++++.++ .+..|+..+... ...+..|...+..+.|+|+++.+++++
T Consensus 8 h~~~i~~~~~~~~---~~~l~~~~~~g--------~i~i~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~ 70 (289)
T cd00200 8 HTGGVTCVAFSPD---GKLLATGSGDG--------TIKVWDLETGEL------LRTLKGHTGPVRDVAASADGTYLASGS 70 (289)
T ss_pred cCCCEEEEEEcCC---CCEEEEeecCc--------EEEEEEeeCCCc------EEEEecCCcceeEEEECCCCCEEEEEc
Confidence 4689999999996 56888888888 777787766543 445677888899999999999999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 162 (261)
.+|.+++|++...+.... ...+...+.++.|+|+++++++++.++.+.+||+++++....+..+...+.++.|
T Consensus 71 ~~~~i~i~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 143 (289)
T cd00200 71 SDKTIRLWDLETGECVRT-------LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF 143 (289)
T ss_pred CCCeEEEEEcCcccceEE-------EeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEE
Confidence 999999999987543111 1134568999999999889988888999999999988877777767778999999
Q ss_pred cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (261)
Q Consensus 163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~ 242 (261)
+|+++++++++.|+.+++||+++++.+..+..+.. .+.++.|+|+++. +++++.++.+++||+++++.+..+..
T Consensus 144 ~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~-----l~~~~~~~~i~i~d~~~~~~~~~~~~ 217 (289)
T cd00200 144 SPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEK-----LLSSSSDGTIKLWDLSTGKCLGTLRG 217 (289)
T ss_pred cCcCCEEEEEcCCCcEEEEEccccccceeEecCcc-ccceEEECCCcCE-----EEEecCCCcEEEEECCCCceecchhh
Confidence 99999999998899999999998888888876554 6999999999987 56677799999999999888877767
Q ss_pred cCcCeeEEEEeeCCCEEe
Q 024868 243 LRKPASVLSISLDGKYLA 260 (261)
Q Consensus 243 ~~~~v~~~~~s~dg~~la 260 (261)
+...+.++.|+|++.+++
T Consensus 218 ~~~~i~~~~~~~~~~~~~ 235 (289)
T cd00200 218 HENGVNSVAFSPDGYLLA 235 (289)
T ss_pred cCCceEEEEEcCCCcEEE
Confidence 888999999999987775
No 23
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.1e-31 Score=187.47 Aligned_cols=236 Identities=12% Similarity=0.192 Sum_probs=195.2
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
.+.|+++.|.|+ +..+|+||.|. .|+.|+..... .....+++|++.|+.+.|.+|++.+++++.
T Consensus 47 ~geI~~~~F~P~---gs~~aSgG~Dr--------~I~LWnv~gdc-----eN~~~lkgHsgAVM~l~~~~d~s~i~S~gt 110 (338)
T KOG0265|consen 47 KGEIYTIKFHPD---GSCFASGGSDR--------AIVLWNVYGDC-----ENFWVLKGHSGAVMELHGMRDGSHILSCGT 110 (338)
T ss_pred cceEEEEEECCC---CCeEeecCCcc--------eEEEEeccccc-----cceeeeccccceeEeeeeccCCCEEEEecC
Confidence 689999999995 67999999999 88888754322 113467799999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceee-----------------------------------eeCCCCCCCCCeEEEEEeeCCcEEE
Q 024868 84 NGGCKLFEVYGGATDINLLA-----------------------------------KKMPPLQDAGPQKCLSFSVDGSRFA 128 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~v~~~~~s~~~~~l~ 128 (261)
|.+++.||.++++...+... ...+.+..+-+++++.|..++..+.
T Consensus 111 Dk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 111 DKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVI 190 (338)
T ss_pred CceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccccccee
Confidence 99999999998875221100 1112333456788999999999999
Q ss_pred EeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccC----CcEEEEEeecCC---CceE
Q 024868 129 AGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED----GVAWTFLTRNSD---EKIE 201 (261)
Q Consensus 129 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~----~~~~~~~~~~~~---~~v~ 201 (261)
+|+-|+.|++||++..+....+.+|...|+.+..+|+|.++.+-+.|.++++||++- .+++..+.++.. ....
T Consensus 191 sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 191 SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL 270 (338)
T ss_pred eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence 999999999999999888888888999999999999999999999999999999984 345666665431 1245
Q ss_pred EEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 202 ~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
.++|+|+++. +.+++.|..+++||......+..+.+|.+.|.+++|+|...+|.
T Consensus 271 ~cswsp~~~~-----i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iil 324 (338)
T KOG0265|consen 271 KCSWSPNGTK-----ITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIIL 324 (338)
T ss_pred eeeccCCCCc-----cccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEE
Confidence 6889999998 68899999999999998888888999999999999999887764
No 24
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.4e-31 Score=192.75 Aligned_cols=226 Identities=13% Similarity=0.101 Sum_probs=201.7
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
-+.|.|+++.|. +..+++|+.|+ .+.+||..++++ ...+.+|...|..+++|+-..++++++.
T Consensus 151 lgWVr~vavdP~---n~wf~tgs~Dr--------tikIwDlatg~L------kltltGhi~~vr~vavS~rHpYlFs~ge 213 (460)
T KOG0285|consen 151 LGWVRSVAVDPG---NEWFATGSADR--------TIKIWDLATGQL------KLTLTGHIETVRGVAVSKRHPYLFSAGE 213 (460)
T ss_pred cceEEEEeeCCC---ceeEEecCCCc--------eeEEEEcccCeE------EEeecchhheeeeeeecccCceEEEecC
Confidence 478999999884 67899999999 999999999988 7789999999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
|+.|+-||++..+.. .....|-..|++++..|.-..|++|+.|.++++||+++...+..+.+|..+|..+.+.
T Consensus 214 dk~VKCwDLe~nkvI-------R~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~ 286 (460)
T KOG0285|consen 214 DKQVKCWDLEYNKVI-------RHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQ 286 (460)
T ss_pred CCeeEEEechhhhhH-------HHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEee
Confidence 999999999987751 2234456899999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc
Q 024868 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL 243 (261)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~ 243 (261)
|-...+++++.|++|++||++.|+...++..|.. .+++++.+|.... +++++.| .|+-|++..|+.+..+.+|
T Consensus 287 ~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~-----fASas~d-nik~w~~p~g~f~~nlsgh 359 (460)
T KOG0285|consen 287 PTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENL-----FASASPD-NIKQWKLPEGEFLQNLSGH 359 (460)
T ss_pred cCCCceEEecCCceEEEeeeccCceeEeeecccc-eeeEEecCCchhh-----hhccCCc-cceeccCCccchhhccccc
Confidence 9888899999999999999999999888887766 5999999998876 4666666 5999999999998888899
Q ss_pred CcCeeEEEEeeCCCEEe
Q 024868 244 RKPASVLSISLDGKYLA 260 (261)
Q Consensus 244 ~~~v~~~~~s~dg~~la 260 (261)
..-+.+++...||-+++
T Consensus 360 ~~iintl~~nsD~v~~~ 376 (460)
T KOG0285|consen 360 NAIINTLSVNSDGVLVS 376 (460)
T ss_pred cceeeeeeeccCceEEE
Confidence 99999999999987664
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.8e-30 Score=204.92 Aligned_cols=229 Identities=21% Similarity=0.263 Sum_probs=198.5
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
+..|+|++|++. .+++|+|=..| ....|....-.+ .+.+.-...+|..++|+..|++|+.|+.
T Consensus 265 ~~kvtaa~fH~~---t~~lvvgFssG--------~f~LyelP~f~l------ih~LSis~~~I~t~~~N~tGDWiA~g~~ 327 (893)
T KOG0291|consen 265 SSKVTAAAFHKG---TNLLVVGFSSG--------EFGLYELPDFNL------IHSLSISDQKILTVSFNSTGDWIAFGCS 327 (893)
T ss_pred ccceeeeeccCC---ceEEEEEecCC--------eeEEEecCCceE------EEEeecccceeeEEEecccCCEEEEcCC
Confidence 468999999994 78999998888 666777666554 5556555678999999999999999877
Q ss_pred C-CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868 84 N-GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 84 d-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 162 (261)
. |.+-||+..+..- ..+...|...+.+++++|||+++++|+.||.|++||..++-+...+..|...|+.+.|
T Consensus 328 klgQLlVweWqsEsY-------VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f 400 (893)
T KOG0291|consen 328 KLGQLLVWEWQSESY-------VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQF 400 (893)
T ss_pred ccceEEEEEeeccce-------eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEE
Confidence 6 8999999987653 1333456688999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCc-EEEEEECCCCeEEeeee
Q 024868 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA-LLAVYDISTWNKIGHKR 241 (261)
Q Consensus 163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~-~i~~~d~~~~~~~~~~~ 241 (261)
+..|+.+++.+.||+|+.||+...+..+++..+......+++..|.|.. +.+|+.|. .|++|++++|+.+..+.
T Consensus 401 ~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGel-----V~AG~~d~F~IfvWS~qTGqllDiLs 475 (893)
T KOG0291|consen 401 TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGEL-----VCAGAQDSFEIFVWSVQTGQLLDILS 475 (893)
T ss_pred EecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCE-----EEeeccceEEEEEEEeecCeeeehhc
Confidence 9999999999999999999999999999998777666788999999997 45555554 79999999999999999
Q ss_pred ccCcCeeEEEEeeCCCEEeC
Q 024868 242 LLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 242 ~~~~~v~~~~~s~dg~~la~ 261 (261)
+|+++|.+++|+|+|..||+
T Consensus 476 GHEgPVs~l~f~~~~~~LaS 495 (893)
T KOG0291|consen 476 GHEGPVSGLSFSPDGSLLAS 495 (893)
T ss_pred CCCCcceeeEEccccCeEEe
Confidence 99999999999999999874
No 26
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.4e-31 Score=189.41 Aligned_cols=192 Identities=19% Similarity=0.250 Sum_probs=168.3
Q ss_pred EeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCe
Q 024868 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH 135 (261)
Q Consensus 56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 135 (261)
...+.+|.+.|+.+.|+|+|..|++|+.|..|.+|+......- ....-.|.++|..+.|.+|++.|++++.|.+
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN------~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN------FWVLKGHSGAVMELHGMRDGSHILSCGTDKT 113 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccc------eeeeccccceeEeeeeccCCCEEEEecCCce
Confidence 4578899999999999999999999999999999998654421 1222257899999999999999999999999
Q ss_pred EEEEEccCceEEeeccccCCceeEEEEcCCC-CEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceE
Q 024868 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (261)
Q Consensus 136 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 214 (261)
++.||+++++.+.+...|..-+..+.-+.-| .++.+++.|+++++||+++.++++++.... .++++.|..++..
T Consensus 114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky--qltAv~f~d~s~q--- 188 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY--QLTAVGFKDTSDQ--- 188 (338)
T ss_pred EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce--eEEEEEecccccc---
Confidence 9999999999999988888888888754434 467788999999999999999998886433 5999999999998
Q ss_pred EEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 215 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
+.+++-|+.|++||++.++....+.+|..+|+.+..+|+|.++.
T Consensus 189 --v~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~ll 232 (338)
T KOG0265|consen 189 --VISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLL 232 (338)
T ss_pred --eeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccc
Confidence 79999999999999999999999999999999999999999875
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=4.9e-31 Score=208.55 Aligned_cols=236 Identities=16% Similarity=0.226 Sum_probs=194.4
Q ss_pred ceeeEEE-EEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCC-CeEEEEe
Q 024868 5 GTVTCGS-WIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCST 82 (261)
Q Consensus 5 ~~v~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~ 82 (261)
..|.+++ |.. +.++++|+.|... .+|.++.+.... .......+|+..|.+++++..+ .+|++++
T Consensus 366 e~vlSL~~~~~----g~llat~sKD~sv------ilWr~~~~~~~~----~~~a~~~gH~~svgava~~~~~asffvsvS 431 (775)
T KOG0319|consen 366 EAVLSLDVWSS----GDLLATGSKDKSV------ILWRLNNNCSKS----LCVAQANGHTNSVGAVAGSKLGASFFVSVS 431 (775)
T ss_pred hheeeeeeccc----CcEEEEecCCceE------EEEEecCCcchh----hhhhhhcccccccceeeecccCccEEEEec
Confidence 3456666 332 4689999888833 566663333322 2234567899999999998754 5789999
Q ss_pred cCCcEEEEEEeCCccccc--eeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEE
Q 024868 83 TNGGCKLFEVYGGATDIN--LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~ 160 (261)
.|+++++|++...+.... .+........|...|++++.+|+.++|++|+.|.+.++|++++......+.+|...+.++
T Consensus 432 ~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V 511 (775)
T KOG0319|consen 432 QDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCV 511 (775)
T ss_pred CCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEE
Confidence 999999999987332111 111112334567899999999999999999999999999999888888888888899999
Q ss_pred EEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868 161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (261)
Q Consensus 161 ~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~ 240 (261)
.|+|..+.++++|.|++|+||.+.+..+++++.+|... |..+.|-.+|++ +++++.||.+++|++++++++.++
T Consensus 512 ~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~a-Vlra~F~~~~~q-----liS~~adGliKlWnikt~eC~~tl 585 (775)
T KOG0319|consen 512 SFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSA-VLRASFIRNGKQ-----LISAGADGLIKLWNIKTNECEMTL 585 (775)
T ss_pred EeccccceeEeccCCceEEEEEeccceeeeeecCccce-eEeeeeeeCCcE-----EEeccCCCcEEEEeccchhhhhhh
Confidence 99999999999999999999999999999999998874 999999999999 799999999999999999999999
Q ss_pred eccCcCeeEEEEeeCCCEEe
Q 024868 241 RLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 241 ~~~~~~v~~~~~s~dg~~la 260 (261)
..|...|++++.+|++.+++
T Consensus 586 D~H~DrvWaL~~~~~~~~~~ 605 (775)
T KOG0319|consen 586 DAHNDRVWALSVSPLLDMFV 605 (775)
T ss_pred hhccceeEEEeecCccceeE
Confidence 99999999999999888665
No 28
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=1.1e-30 Score=207.19 Aligned_cols=234 Identities=20% Similarity=0.314 Sum_probs=202.7
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
+-+.|..|.| +.+++++|...| ++..||.....+ ....+.|.+.+.+++.+||++.+++++.|
T Consensus 413 ~y~l~~~Fvp---gd~~Iv~G~k~G--------el~vfdlaS~~l------~Eti~AHdgaIWsi~~~pD~~g~vT~saD 475 (888)
T KOG0306|consen 413 GYILASKFVP---GDRYIVLGTKNG--------ELQVFDLASASL------VETIRAHDGAIWSISLSPDNKGFVTGSAD 475 (888)
T ss_pred ccEEEEEecC---CCceEEEeccCC--------ceEEEEeehhhh------hhhhhccccceeeeeecCCCCceEEecCC
Confidence 3566778888 478999999999 888899877665 45677999999999999999999999999
Q ss_pred CcEEEEEEeCCcc----ccc-eeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeE
Q 024868 85 GGCKLFEVYGGAT----DIN-LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLD 159 (261)
Q Consensus 85 g~i~i~~~~~~~~----~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~ 159 (261)
.+|++||..-... ..+ +-..+...+.-...|.++.+||||++++++--|.++++|-+++.+-...+.+|.-||.+
T Consensus 476 ktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~s 555 (888)
T KOG0306|consen 476 KTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLS 555 (888)
T ss_pred cEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeE
Confidence 9999999853221 011 11122334444678999999999999999999999999999999998899999999999
Q ss_pred EEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868 160 MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (261)
Q Consensus 160 ~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~ 239 (261)
+..|||++.+++|+.|..|+||-++-|.|-+.+..|.++ |.++.|.|.... .++++.|+.++-||-.+.+.+..
T Consensus 556 mDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDS-vm~V~F~P~~~~-----FFt~gKD~kvKqWDg~kFe~iq~ 629 (888)
T KOG0306|consen 556 MDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDS-VMSVQFLPKTHL-----FFTCGKDGKVKQWDGEKFEEIQK 629 (888)
T ss_pred EeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCc-eeEEEEccccee-----EEEecCcceEEeechhhhhhhee
Confidence 999999999999999999999999999999999988774 999999997665 58999999999999999999999
Q ss_pred eeccCcCeeEEEEeeCCCEEeC
Q 024868 240 KRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 240 ~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+..|...|++++.+|+|.++++
T Consensus 630 L~~H~~ev~cLav~~~G~~vvs 651 (888)
T KOG0306|consen 630 LDGHHSEVWCLAVSPNGSFVVS 651 (888)
T ss_pred eccchheeeeeEEcCCCCeEEe
Confidence 9999999999999999999874
No 29
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=1.9e-29 Score=202.82 Aligned_cols=202 Identities=14% Similarity=0.178 Sum_probs=156.7
Q ss_pred eecCCCCCceEEEECC-CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCCe
Q 024868 58 VFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGH 135 (261)
Q Consensus 58 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~ 135 (261)
.+.+|.+.|.+++|+| ++++|++++.|++|++||+..................|...|.+++|+|++ .+|++++.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4778999999999999 889999999999999999976532111000111223466889999999975 68999999999
Q ss_pred EEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEE
Q 024868 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (261)
Q Consensus 136 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~ 215 (261)
|++||+.+++....+..|...|.+++|+|+|++|++++.|+.|++||+++++.+..+..|.......+.|.+++..+ +.
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i-vt 228 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI-IT 228 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE-EE
Confidence 99999999888777777888999999999999999999999999999999999888887765545678899988762 21
Q ss_pred EEEeeCCCcEEEEEECCCCeE-Eeeeecc-CcCeeEEEEeeCCCEEe
Q 024868 216 CTVQRGDKALLAVYDISTWNK-IGHKRLL-RKPASVLSISLDGKYLA 260 (261)
Q Consensus 216 ~~~~~~~d~~i~~~d~~~~~~-~~~~~~~-~~~v~~~~~s~dg~~la 260 (261)
+..+.+.|+.|++||+++... +.....+ ...+..+.|++|+++|+
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~ 275 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLY 275 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEE
Confidence 112235689999999987653 3222222 24556677899998876
No 30
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.98 E-value=4.6e-31 Score=193.11 Aligned_cols=192 Identities=13% Similarity=0.205 Sum_probs=175.5
Q ss_pred EEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCC-CCCCeEEEEEeeCCcEEEEeccC
Q 024868 55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSVDGSRFAAGGVD 133 (261)
Q Consensus 55 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d 133 (261)
....+.+|.+.|.++++.|-..+|++|+.|++++|||+.+++. ...+. |...|..+++|+--.|+++++.|
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L--------kltltGhi~~vr~vavS~rHpYlFs~ged 214 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL--------KLTLTGHIETVRGVAVSKRHPYLFSAGED 214 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE--------EEeecchhheeeeeeecccCceEEEecCC
Confidence 3457889999999999999999999999999999999999985 22333 56789999999999999999999
Q ss_pred CeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcce
Q 024868 134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213 (261)
Q Consensus 134 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 213 (261)
+.|+-||+...+.++.+.+|-+.|++++.+|.-..|++++.|..+++||+++...+..+.+|.. +|.++.+.|-+.+
T Consensus 215 k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~-~V~~V~~~~~dpq-- 291 (460)
T KOG0285|consen 215 KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN-PVASVMCQPTDPQ-- 291 (460)
T ss_pred CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC-cceeEEeecCCCc--
Confidence 9999999999999999999999999999999999999999999999999999999999998877 6999999997777
Q ss_pred EEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 214 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
+++++.|++|++||++.|+....+..|...+.+++.+|....+|
T Consensus 292 ---vit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fA 335 (460)
T KOG0285|consen 292 ---VITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFA 335 (460)
T ss_pred ---eEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhh
Confidence 79999999999999999999988999999999999999877665
No 31
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=1.9e-29 Score=192.40 Aligned_cols=228 Identities=21% Similarity=0.259 Sum_probs=189.1
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
..++.++.|.|+ ...+++++.++ .+..|+..+... ...+..|...+.++.|+|+++++++++.
T Consensus 51 ~~~i~~~~~~~~---~~~l~~~~~~~--------~i~i~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 113 (289)
T cd00200 51 TGPVRDVAASAD---GTYLASGSSDK--------TIRLWDLETGEC------VRTLTGHTSYVSSVAFSPDGRILSSSSR 113 (289)
T ss_pred CcceeEEEECCC---CCEEEEEcCCC--------eEEEEEcCcccc------eEEEeccCCcEEEEEEcCCCCEEEEecC
Confidence 456778899885 45788888888 888888876543 4456678889999999999888888887
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
++.+++|++.+.+.... ...+...+.+++|+|+++++++++.++.+++||+++++....+..+...+.++.|+
T Consensus 114 ~~~i~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 186 (289)
T cd00200 114 DKTIKVWDVETGKCLTT-------LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS 186 (289)
T ss_pred CCeEEEEECCCcEEEEE-------eccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEEC
Confidence 99999999986543111 11356789999999999999988779999999998887776666666789999999
Q ss_pred CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc
Q 024868 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL 243 (261)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~ 243 (261)
|+++.+++++.++.+++||+++++.+..+..+.. .+.+++|+|++.+ +++++.++.+++||+.+++....+..+
T Consensus 187 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~-----~~~~~~~~~i~i~~~~~~~~~~~~~~~ 260 (289)
T cd00200 187 PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN-GVNSVAFSPDGYL-----LASGSEDGTIRVWDLRTGECVQTLSGH 260 (289)
T ss_pred CCcCEEEEecCCCcEEEEECCCCceecchhhcCC-ceEEEEEcCCCcE-----EEEEcCCCcEEEEEcCCceeEEEcccc
Confidence 9999999999999999999999888888765554 6999999999776 566777999999999988888778888
Q ss_pred CcCeeEEEEeeCCCEEeC
Q 024868 244 RKPASVLSISLDGKYLAM 261 (261)
Q Consensus 244 ~~~v~~~~~s~dg~~la~ 261 (261)
...+.+++|+|++++|++
T Consensus 261 ~~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 261 TNSVTSLAWSPDGKRLAS 278 (289)
T ss_pred CCcEEEEEECCCCCEEEE
Confidence 889999999999988864
No 32
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.98 E-value=2.1e-29 Score=192.62 Aligned_cols=237 Identities=15% Similarity=0.143 Sum_probs=184.6
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeec---CCCCCceEEEECCCCCeEE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD---ESEGDPMTIAVNPSGDDFV 79 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~ 79 (261)
.+--|.|+.|+|+ ...+++.+.|+ +++.||-.+++. ...+. +|.+.|.+++|+||+..++
T Consensus 189 HskFV~~VRysPD---G~~Fat~gsDg--------ki~iyDGktge~------vg~l~~~~aHkGsIfalsWsPDs~~~~ 251 (603)
T KOG0318|consen 189 HSKFVNCVRYSPD---GSRFATAGSDG--------KIYIYDGKTGEK------VGELEDSDAHKGSIFALSWSPDSTQFL 251 (603)
T ss_pred cccceeeEEECCC---CCeEEEecCCc--------cEEEEcCCCccE------EEEecCCCCccccEEEEEECCCCceEE
Confidence 3456899999997 67999999999 999999988876 44454 8999999999999999999
Q ss_pred EEecCCcEEEEEEeCCcccccee------------------------------------eeeCCCCCCCCCeEEEEEeeC
Q 024868 80 CSTTNGGCKLFEVYGGATDINLL------------------------------------AKKMPPLQDAGPQKCLSFSVD 123 (261)
Q Consensus 80 ~~~~dg~i~i~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~v~~~~~s~~ 123 (261)
+++.|.+++|||+.+.+...... ........|...|+++..+||
T Consensus 252 T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d 331 (603)
T KOG0318|consen 252 TVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD 331 (603)
T ss_pred EecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC
Confidence 99999999999998775411100 001112235678999999999
Q ss_pred CcEEEEeccCCeEEEEEccCceEE-------------------------------ee-----------------------
Q 024868 124 GSRFAAGGVDGHLRIMHWPSLRII-------------------------------LD----------------------- 149 (261)
Q Consensus 124 ~~~l~~~~~d~~i~~~d~~~~~~~-------------------------------~~----------------------- 149 (261)
+++|++|+.||.|.-|+..++..- +.
T Consensus 332 ~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~l 411 (603)
T KOG0318|consen 332 GKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGL 411 (603)
T ss_pred CCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeE
Confidence 999999999999999997332110 00
Q ss_pred -------------------ccccC--------CceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEE-EeecCCCceE
Q 024868 150 -------------------EPKAH--------KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF-LTRNSDEKIE 201 (261)
Q Consensus 150 -------------------~~~~~--------~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~ 201 (261)
+..+. -...+++++|++..++.|+.|+.|+||.+..++.... ....+.++++
T Consensus 412 av~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT 491 (603)
T KOG0318|consen 412 AVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAIT 491 (603)
T ss_pred EEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCce
Confidence 00000 1235788999999999999999999999987654332 2223445799
Q ss_pred EEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEE-eeeeccCcCeeEEEEeeCCCEEeC
Q 024868 202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI-GHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 202 ~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
.+++|||+.+ ++++...+.+.+||+.+.+.. .....|...|.+++|+|+.+++|+
T Consensus 492 ~vaySpd~~y-----la~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vAT 547 (603)
T KOG0318|consen 492 DVAYSPDGAY-----LAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVAT 547 (603)
T ss_pred EEEECCCCcE-----EEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEe
Confidence 9999999999 789999999999999988763 234568899999999999999985
No 33
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.6e-30 Score=190.37 Aligned_cols=226 Identities=15% Similarity=0.145 Sum_probs=191.0
Q ss_pred eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCc
Q 024868 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (261)
Q Consensus 7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 86 (261)
|..++|... ..++++++.|- .+..||.++.. .....+.+|...|.++.|-|.|.++++++.|.+
T Consensus 153 v~di~~~a~---Gk~l~tcSsDl--------~~~LWd~~~~~-----~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~t 216 (406)
T KOG0295|consen 153 VFDISFDAS---GKYLATCSSDL--------SAKLWDFDTFF-----RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNT 216 (406)
T ss_pred eeEEEEecC---ccEEEecCCcc--------chhheeHHHHH-----HHHHHhcCcccceeeEEEEecCCeeeecccccc
Confidence 777777664 56888888777 45555554421 113456789999999999999999999999999
Q ss_pred EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCC-
Q 024868 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD- 165 (261)
Q Consensus 87 i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~- 165 (261)
|+.|++.++-+... ...|...|..++.+.||..+++++.|.++++|-+.+++....+..|.-+|.+++|-|.
T Consensus 217 ik~We~~tg~cv~t-------~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~ 289 (406)
T KOG0295|consen 217 IKAWECDTGYCVKT-------FPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPES 289 (406)
T ss_pred eeEEecccceeEEe-------ccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccc
Confidence 99999999876222 2234568999999999999999999999999999999776677777778999999763
Q ss_pred --------------CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEEC
Q 024868 166 --------------SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231 (261)
Q Consensus 166 --------------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~ 231 (261)
++++.+++.|++|++||+.++.++.++.+|.+ .|+.++|+|.|+| ++++.+|+++++||+
T Consensus 290 ~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gky-----i~ScaDDktlrvwdl 363 (406)
T KOG0295|consen 290 SYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKY-----ILSCADDKTLRVWDL 363 (406)
T ss_pred cCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeE-----EEEEecCCcEEEEEe
Confidence 25899999999999999999999999998876 6999999999999 799999999999999
Q ss_pred CCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 232 STWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 232 ~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+++++++.+..|+..+.++.|+.+..|+++
T Consensus 364 ~~~~cmk~~~ah~hfvt~lDfh~~~p~VvT 393 (406)
T KOG0295|consen 364 KNLQCMKTLEAHEHFVTSLDFHKTAPYVVT 393 (406)
T ss_pred ccceeeeccCCCcceeEEEecCCCCceEEe
Confidence 999999999999999999999988877653
No 34
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.2e-31 Score=203.89 Aligned_cols=227 Identities=15% Similarity=0.163 Sum_probs=194.7
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
-||..++|..+ .+.+++|+.|. +|.+|+.++... ...+..|.+-|.+++.+|...+++++++|
T Consensus 56 ~PvRa~kfiaR---knWiv~GsDD~--------~IrVfnynt~ek------V~~FeAH~DyIR~iavHPt~P~vLtsSDD 118 (794)
T KOG0276|consen 56 VPVRAAKFIAR---KNWIVTGSDDM--------QIRVFNYNTGEK------VKTFEAHSDYIRSIAVHPTLPYVLTSSDD 118 (794)
T ss_pred cchhhheeeec---cceEEEecCCc--------eEEEEeccccee------eEEeeccccceeeeeecCCCCeEEecCCc
Confidence 57888888874 78999999999 777777777654 66899999999999999999999999999
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
-+|++||.+..-... +..-.|...|.+++|+| |.+.+++++-|++|++|.+.+..+...+.+|...|.++.+-
T Consensus 119 m~iKlW~we~~wa~~------qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy 192 (794)
T KOG0276|consen 119 MTIKLWDWENEWACE------QTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYY 192 (794)
T ss_pred cEEEEeeccCceeee------eEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEec
Confidence 999999998764322 22334567899999999 78899999999999999999888888888888999999997
Q ss_pred CC--CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868 164 LD--SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (261)
Q Consensus 164 ~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~ 241 (261)
+. ..+|++|++|..++|||.++..|++++.+|.. .|..+.|+|.-.. +++|++||+++||+..+-+...++.
T Consensus 193 ~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~-Nvs~v~fhp~lpi-----iisgsEDGTvriWhs~Ty~lE~tLn 266 (794)
T KOG0276|consen 193 TGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN-NVSFVFFHPELPI-----IISGSEDGTVRIWNSKTYKLEKTLN 266 (794)
T ss_pred cCCCcceEEecCCCceEEEeecchHHHHHHhhcccc-cceEEEecCCCcE-----EEEecCCccEEEecCcceehhhhhh
Confidence 74 46999999999999999999999999999887 4999999998876 7999999999999999888776666
Q ss_pred ccCcCeeEEEEeeCCCEEe
Q 024868 242 LLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 242 ~~~~~v~~~~~s~dg~~la 260 (261)
.....+++++-.+.++.++
T Consensus 267 ~gleRvW~I~~~k~~~~i~ 285 (794)
T KOG0276|consen 267 YGLERVWCIAAHKGDGKIA 285 (794)
T ss_pred cCCceEEEEeecCCCCeEE
Confidence 6667788887777665554
No 35
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=3e-29 Score=215.63 Aligned_cols=227 Identities=14% Similarity=0.148 Sum_probs=182.3
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC-CCCeEEEEe
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCST 82 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 82 (261)
..+|.+++|++.. ..++++++.++ .+..||..+... ...+.+|.+.|.+++|+| ++.+|++++
T Consensus 532 ~~~v~~l~~~~~~--~~~las~~~Dg--------~v~lWd~~~~~~------~~~~~~H~~~V~~l~~~p~~~~~L~Sgs 595 (793)
T PLN00181 532 RSKLSGICWNSYI--KSQVASSNFEG--------VVQVWDVARSQL------VTEMKEHEKRVWSIDYSSADPTLLASGS 595 (793)
T ss_pred cCceeeEEeccCC--CCEEEEEeCCC--------eEEEEECCCCeE------EEEecCCCCCEEEEEEcCCCCCEEEEEc
Confidence 4678899998752 56899999999 888999877654 456788999999999997 788999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCce-EEeeccccCCceeEE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDM 160 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~v~~~ 160 (261)
.|++|++||+.++... ..+.....+.++.|++ ++.+|++|+.|+.|++||+++.+ ....+..|...|.++
T Consensus 596 ~Dg~v~iWd~~~~~~~--------~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v 667 (793)
T PLN00181 596 DDGSVKLWSINQGVSI--------GTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYV 667 (793)
T ss_pred CCCEEEEEECCCCcEE--------EEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEE
Confidence 9999999999876541 1222345789999964 79999999999999999998765 344556677789999
Q ss_pred EEcCCCCEEEEecCCCcEEEEEccC------CcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868 161 DFSLDSEFLATTSTDGSARIWKTED------GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (261)
Q Consensus 161 ~~s~~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~ 234 (261)
.|. ++.+|++++.|+.|++||++. .+++..+.+|.. .+..++|+|++++ +++++.|+.|++|+....
T Consensus 668 ~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~-~i~~v~~s~~~~~-----lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 668 RFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN-VKNFVGLSVSDGY-----IATGSETNEVFVYHKAFP 740 (793)
T ss_pred EEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC-CeeEEEEcCCCCE-----EEEEeCCCEEEEEECCCC
Confidence 997 688999999999999999974 356777777655 5899999999997 799999999999998765
Q ss_pred eEEeee-------------eccCcCeeEEEEeeCCCEEeC
Q 024868 235 NKIGHK-------------RLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 235 ~~~~~~-------------~~~~~~v~~~~~s~dg~~la~ 261 (261)
..+... ..+...|.+++|+|+++.|++
T Consensus 741 ~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva 780 (793)
T PLN00181 741 MPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVA 780 (793)
T ss_pred CceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEE
Confidence 433211 123356899999999998863
No 36
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=8.1e-29 Score=199.26 Aligned_cols=229 Identities=9% Similarity=0.091 Sum_probs=171.2
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceec-CCeEEeeecCCCCCceEEEECCCC-CeEEEE
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT-SPLVTYVFDESEGDPMTIAVNPSG-DDFVCS 81 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 81 (261)
.++|++++|+|. +.+++++|+.|+ .|..||........ .......+.+|...|.+++|+|++ +.|+++
T Consensus 75 ~~~V~~v~fsP~--d~~~LaSgS~Dg--------tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSg 144 (493)
T PTZ00421 75 EGPIIDVAFNPF--DPQKLFTASEDG--------TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASA 144 (493)
T ss_pred CCCEEEEEEcCC--CCCEEEEEeCCC--------EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEE
Confidence 578999999983 245899999999 88888875543211 112244678999999999999975 689999
Q ss_pred ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCc-eeEE
Q 024868 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS-VLDM 160 (261)
Q Consensus 82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-v~~~ 160 (261)
+.|++|++||+.++.... ....|...|.+++|+|+|++|++++.|+.|++||+++++.+.....|.+. ...+
T Consensus 145 s~DgtVrIWDl~tg~~~~-------~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~ 217 (493)
T PTZ00421 145 GADMVVNVWDVERGKAVE-------VIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRC 217 (493)
T ss_pred eCCCEEEEEECCCCeEEE-------EEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEE
Confidence 999999999998765311 11235678999999999999999999999999999999887776666553 4567
Q ss_pred EEcCCCCEEEEec----CCCcEEEEEccCCc-EEEEEeecCCCceEEEEEecCCCcceEEEEEeeC-CCcEEEEEECCCC
Q 024868 161 DFSLDSEFLATTS----TDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG-DKALLAVYDISTW 234 (261)
Q Consensus 161 ~~s~~~~~l~~~~----~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~-~d~~i~~~d~~~~ 234 (261)
.|.+++..+++++ .|+.|++||+++.. +......+....+....|+++++. ++.++ .|+.|++||+.++
T Consensus 218 ~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~-----L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 218 LWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNL-----LYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCE-----EEEEEeCCCeEEEEEeeCC
Confidence 8999887777654 47899999998754 444333333334666789999997 34444 6999999999998
Q ss_pred eEEeeeec-cCcCeeEEEEee
Q 024868 235 NKIGHKRL-LRKPASVLSISL 254 (261)
Q Consensus 235 ~~~~~~~~-~~~~v~~~~~s~ 254 (261)
+.+..... ...+...++|.|
T Consensus 293 ~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 293 RLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred ceEEEeeccCCCCCcceEecc
Confidence 87654432 334566777766
No 37
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.2e-29 Score=175.96 Aligned_cols=196 Identities=14% Similarity=0.192 Sum_probs=165.2
Q ss_pred EeeecCCCCCceEEEECCC-CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC
Q 024868 56 TYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (261)
Q Consensus 56 ~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 134 (261)
...+++|.+.+..++|+|- |..|++++.|..|++|+...... . .......-.|+..|++++|+|.|++|++++.|.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-~--~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-W--TCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-E--EEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 5578899999999999997 88999999999999999985321 1 111122225678999999999999999999999
Q ss_pred eEEEEEccCc--eEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCC---cEEEEEeecCCCceEEEEEecCC
Q 024868 135 HLRIMHWPSL--RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG---VAWTFLTRNSDEKIELCRFSKDG 209 (261)
Q Consensus 135 ~i~~~d~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~p~~ 209 (261)
++.||.-..+ +.+..+.+|...|.+++|+++|++||+++.|++|.||....+ ++...++.|.. .|..+.|+|..
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq-DVK~V~WHPt~ 162 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ-DVKHVIWHPTE 162 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc-cccEEEEcCCc
Confidence 9999975543 456677788889999999999999999999999999998743 56778888776 49999999988
Q ss_pred CcceEEEEEeeCCCcEEEEEECC---CCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 210 TKPFLFCTVQRGDKALLAVYDIS---TWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 210 ~~~~~~~~~~~~~d~~i~~~d~~---~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
.. +++++.|++|++|+-. ..++..++..|...|.+++|++.|..|+
T Consensus 163 dl-----L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~ 211 (312)
T KOG0645|consen 163 DL-----LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLV 211 (312)
T ss_pred ce-----eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEE
Confidence 87 7999999999999876 4567788889999999999999997765
No 38
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=2.8e-31 Score=200.74 Aligned_cols=223 Identities=17% Similarity=0.248 Sum_probs=186.5
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCC-CceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKT-TSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
-|.++.|.|. ...++++++.|+ .|+.|+.-. ..+ ...+.+|..+|.+++|+++|..+++++.|
T Consensus 216 gvsai~~fp~--~~hLlLS~gmD~--------~vklW~vy~~~~~------lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD 279 (503)
T KOG0282|consen 216 GVSAIQWFPK--KGHLLLSGGMDG--------LVKLWNVYDDRRC------LRTFKGHRKPVRDASFNNCGTSFLSASFD 279 (503)
T ss_pred ccchhhhccc--eeeEEEecCCCc--------eEEEEEEecCcce------ehhhhcchhhhhhhhccccCCeeeeeecc
Confidence 4788889985 378999999999 777777654 333 66789999999999999999999999999
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
+.+++||.+++++ ...+.....++++.|.||+ +.+++|+.|+.|+.||+++++.++....|-+.|..+.|-
T Consensus 280 ~~lKlwDtETG~~--------~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~ 351 (503)
T KOG0282|consen 280 RFLKLWDTETGQV--------LSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFV 351 (503)
T ss_pred eeeeeeccccceE--------EEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEc
Confidence 9999999999987 3334445678999999988 889999999999999999999888777778899999999
Q ss_pred CCCCEEEEecCCCcEEEEEccCCcEEEE--------------------------------E--------------eecC-
Q 024868 164 LDSEFLATTSTDGSARIWKTEDGVAWTF--------------------------------L--------------TRNS- 196 (261)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~--------------------------------~--------------~~~~- 196 (261)
++|++++++++|++++||+.+.+-+++. + .+|.
T Consensus 352 ~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v 431 (503)
T KOG0282|consen 352 DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV 431 (503)
T ss_pred cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec
Confidence 9999999999999999999764322111 0 1111
Q ss_pred CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCC
Q 024868 197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK 257 (261)
Q Consensus 197 ~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~ 257 (261)
.+.-..+.|||||++ +++|..||.+.+||.++-+.+..+..|..++..+.|+|...
T Consensus 432 aGys~~v~fSpDG~~-----l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~ 487 (503)
T KOG0282|consen 432 AGYSCQVDFSPDGRT-----LCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEP 487 (503)
T ss_pred cCceeeEEEcCCCCe-----EEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCc
Confidence 112346899999998 79999999999999999999989999999999999999653
No 39
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.9e-28 Score=172.21 Aligned_cols=222 Identities=13% Similarity=0.155 Sum_probs=174.5
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCC-CceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKT-TSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
.+++..+||+|.. +.++|+++.+. .|..|+... ..+ ......-.+|+..|.+++|+|.|++|++++
T Consensus 14 ~~r~W~~awhp~~--g~ilAscg~Dk--------~vriw~~~~~~s~---~ck~vld~~hkrsVRsvAwsp~g~~La~aS 80 (312)
T KOG0645|consen 14 KDRVWSVAWHPGK--GVILASCGTDK--------AVRIWSTSSGDSW---TCKTVLDDGHKRSVRSVAWSPHGRYLASAS 80 (312)
T ss_pred CCcEEEEEeccCC--ceEEEeecCCc--------eEEEEecCCCCcE---EEEEeccccchheeeeeeecCCCcEEEEee
Confidence 4679999999952 56899999999 777777763 222 111223357999999999999999999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCce---EEeeccccCCceeE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR---IILDEPKAHKSVLD 159 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~v~~ 159 (261)
.|.++.||.-..+.... ....-.|...|.+++||++|++||+++.|..|.+|.+..+. ....+..|...|..
T Consensus 81 FD~t~~Iw~k~~~efec-----v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~ 155 (312)
T KOG0645|consen 81 FDATVVIWKKEDGEFEC-----VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKH 155 (312)
T ss_pred ccceEEEeecCCCceeE-----EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccE
Confidence 99999999887654211 12223456899999999999999999999999999987443 44456677778999
Q ss_pred EEEcCCCCEEEEecCCCcEEEEEcc---CCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868 160 MDFSLDSEFLATTSTDGSARIWKTE---DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (261)
Q Consensus 160 ~~~s~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~ 236 (261)
+.|+|...+|++++.|++|++|+-. ..++.+++.+|.. .|.+++|+|.|.. ++++++|++++||...+.-
T Consensus 156 V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~r-----l~s~sdD~tv~Iw~~~~~~- 228 (312)
T KOG0645|consen 156 VIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSR-----LVSCSDDGTVSIWRLYTDL- 228 (312)
T ss_pred EEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCce-----EEEecCCcceEeeeeccCc-
Confidence 9999999999999999999999876 3467888988877 5999999999987 7999999999999965321
Q ss_pred EeeeeccCcCeeEEEEe
Q 024868 237 IGHKRLLRKPASVLSIS 253 (261)
Q Consensus 237 ~~~~~~~~~~v~~~~~s 253 (261)
-..|...++.+.|.
T Consensus 229 ---~~~~sr~~Y~v~W~ 242 (312)
T KOG0645|consen 229 ---SGMHSRALYDVPWD 242 (312)
T ss_pred ---chhcccceEeeeec
Confidence 11234556666665
No 40
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=3.5e-29 Score=175.99 Aligned_cols=227 Identities=14% Similarity=0.265 Sum_probs=180.4
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC-CCCeEEEEe
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCST 82 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 82 (261)
..+|.+++|+-+ +..+++|+.+. .+..|+.+...+ .......+|.+.|-.++|+| ..+.+++++
T Consensus 20 ~~~v~Sv~wn~~---g~~lasgs~dk--------tv~v~n~e~~r~----~~~~~~~gh~~svdql~w~~~~~d~~atas 84 (313)
T KOG1407|consen 20 VQKVHSVAWNCD---GTKLASGSFDK--------TVSVWNLERDRF----RKELVYRGHTDSVDQLCWDPKHPDLFATAS 84 (313)
T ss_pred hhcceEEEEccc---CceeeecccCC--------ceEEEEecchhh----hhhhcccCCCcchhhheeCCCCCcceEEec
Confidence 578999999986 66899999888 455555444333 22456789999999999988 567889999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCc------------------
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL------------------ 144 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~------------------ 144 (261)
.|.+|++||++..++.... ...+.-.-+.|+|+|.++++++.|..|.+.|.++.
T Consensus 85 ~dk~ir~wd~r~~k~~~~i--------~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~ 156 (313)
T KOG1407|consen 85 GDKTIRIWDIRSGKCTARI--------ETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWN 156 (313)
T ss_pred CCceEEEEEeccCcEEEEe--------eccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeec
Confidence 9999999999988763222 22233345788888888888888777777776432
Q ss_pred -----------------------eEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceE
Q 024868 145 -----------------------RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIE 201 (261)
Q Consensus 145 -----------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 201 (261)
+++..+..|.....++.|+|+|+++|+|+.|..+.+||++.--+.+.+... +-||+
T Consensus 157 ~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl-dwpVR 235 (313)
T KOG1407|consen 157 NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL-DWPVR 235 (313)
T ss_pred CCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc-cCceE
Confidence 223334456667889999999999999999999999999988888888765 44899
Q ss_pred EEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 202 ~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
.+.||.||++ ++++++|..|-|=++++|..+..++ +.++...++|+|...+||
T Consensus 236 TlSFS~dg~~-----lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLA 288 (313)
T KOG1407|consen 236 TLSFSHDGRM-----LASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLA 288 (313)
T ss_pred EEEeccCcce-----eeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceee
Confidence 9999999999 7999999999999999999986655 668889999999988887
No 41
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.1e-29 Score=195.83 Aligned_cols=228 Identities=16% Similarity=0.173 Sum_probs=194.4
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecC-CCCCceEEEECCCCCeEEEEe
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE-SEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~ 82 (261)
...|+++.|+++ ...|++|..+| .+..||..+.+. ...+.+ |...|.+++|+ +..+.+|+
T Consensus 217 ~~~vtSv~ws~~---G~~LavG~~~g--------~v~iwD~~~~k~------~~~~~~~h~~rvg~laW~--~~~lssGs 277 (484)
T KOG0305|consen 217 EELVTSVKWSPD---GSHLAVGTSDG--------TVQIWDVKEQKK------TRTLRGSHASRVGSLAWN--SSVLSSGS 277 (484)
T ss_pred CCceEEEEECCC---CCEEEEeecCC--------eEEEEehhhccc------cccccCCcCceeEEEecc--CceEEEec
Confidence 578999999996 67999999999 899999876553 345566 89999999998 66789999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 162 (261)
.++.|..+|++..+.... ....|...|..++|++|++++|+|+.|+.+.|||....+....+..|...|..++|
T Consensus 278 r~~~I~~~dvR~~~~~~~------~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~aw 351 (484)
T KOG0305|consen 278 RDGKILNHDVRISQHVVS------TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAW 351 (484)
T ss_pred CCCcEEEEEEecchhhhh------hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeee
Confidence 999999999998765222 13346789999999999999999999999999999888888888899999999999
Q ss_pred cC-CCCEEEEec--CCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868 163 SL-DSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (261)
Q Consensus 163 s~-~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~ 239 (261)
+| ...+||+|+ .|+.|++||..+++.+..+... ..|.++.|++..+.+. ...|..++.|.||+..+.+.+..
T Consensus 352 cP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg--sQVcsL~Wsk~~kEi~---sthG~s~n~i~lw~~ps~~~~~~ 426 (484)
T KOG0305|consen 352 CPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG--SQVCSLIWSKKYKELL---STHGYSENQITLWKYPSMKLVAE 426 (484)
T ss_pred CCCccCceEEcCCCcccEEEEEEcCCCcEecccccC--CceeeEEEcCCCCEEE---EecCCCCCcEEEEeccccceeee
Confidence 99 566888865 5899999999999999888743 4599999999998731 34455677999999999999999
Q ss_pred eeccCcCeeEEEEeeCCCEEeC
Q 024868 240 KRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 240 ~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+.+|...|..+++||||..+++
T Consensus 427 l~gH~~RVl~la~SPdg~~i~t 448 (484)
T KOG0305|consen 427 LLGHTSRVLYLALSPDGETIVT 448 (484)
T ss_pred ecCCcceeEEEEECCCCCEEEE
Confidence 9999999999999999999874
No 42
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.8e-29 Score=190.16 Aligned_cols=225 Identities=14% Similarity=0.196 Sum_probs=183.2
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCC-CeEEEEe
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCST 82 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~ 82 (261)
+-.|+++.|-.+ +.++++|+..| .+..||..+... ...+.+|+.++..+.|+|++ ..+++|+
T Consensus 68 k~~v~s~~fR~D---G~LlaaGD~sG--------~V~vfD~k~r~i------LR~~~ah~apv~~~~f~~~d~t~l~s~s 130 (487)
T KOG0310|consen 68 KDVVYSVDFRSD---GRLLAAGDESG--------HVKVFDMKSRVI------LRQLYAHQAPVHVTKFSPQDNTMLVSGS 130 (487)
T ss_pred ccceeEEEeecC---CeEEEccCCcC--------cEEEeccccHHH------HHHHhhccCceeEEEecccCCeEEEecC
Confidence 346888889875 67999999999 889999554333 44688999999999999955 5567888
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~ 161 (261)
+|+.+++||+.+... ......|...|.+.+|+| ++..+++|+.||.|++||++..........|..+|..+.
T Consensus 131 Dd~v~k~~d~s~a~v-------~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl 203 (487)
T KOG0310|consen 131 DDKVVKYWDLSTAYV-------QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVL 203 (487)
T ss_pred CCceEEEEEcCCcEE-------EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEE
Confidence 889999999988762 133456789999999999 466899999999999999998744445567778999999
Q ss_pred EcCCCCEEEEecCCCcEEEEEccCCcEEE-EEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868 162 FSLDSEFLATTSTDGSARIWKTEDGVAWT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (261)
Q Consensus 162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~ 240 (261)
+-|.|..+++++. +.+++||+.+|.... .+..|+. .|+|+++..++.. +++++-|+.+++||+.+.+.+..+
T Consensus 204 ~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~K-tVTcL~l~s~~~r-----LlS~sLD~~VKVfd~t~~Kvv~s~ 276 (487)
T KOG0310|consen 204 ALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNK-TVTCLRLASDSTR-----LLSGSLDRHVKVFDTTNYKVVHSW 276 (487)
T ss_pred EcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccc-eEEEEEeecCCce-----EeecccccceEEEEccceEEEEee
Confidence 9999999999874 689999999665444 4444555 5999999999988 799999999999999888877655
Q ss_pred eccCcCeeEEEEeeCCCEEe
Q 024868 241 RLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 241 ~~~~~~v~~~~~s~dg~~la 260 (261)
. ..++|.+++.+||++.++
T Consensus 277 ~-~~~pvLsiavs~dd~t~v 295 (487)
T KOG0310|consen 277 K-YPGPVLSIAVSPDDQTVV 295 (487)
T ss_pred e-cccceeeEEecCCCceEE
Confidence 4 568999999999998776
No 43
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=1.4e-28 Score=188.15 Aligned_cols=230 Identities=18% Similarity=0.217 Sum_probs=189.7
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCC-eEEEE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCS 81 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~ 81 (261)
.+|||..++|.++ ..+++|+|.+.+ +..+++.||..+..- .+.+|...|.+++|-|... +++++
T Consensus 102 ~aG~I~Di~Wd~d--s~RI~avGEGre-----rfg~~F~~DSG~SvG--------ei~GhSr~ins~~~KpsRPfRi~T~ 166 (603)
T KOG0318|consen 102 LAGPIKDISWDFD--SKRIAAVGEGRE-----RFGHVFLWDSGNSVG--------EITGHSRRINSVDFKPSRPFRIATG 166 (603)
T ss_pred cccccccceeCCC--CcEEEEEecCcc-----ceeEEEEecCCCccc--------eeeccceeEeeeeccCCCceEEEec
Confidence 3689999999886 478888887655 234788888766432 5889999999999999766 58999
Q ss_pred ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecc---ccCCcee
Q 024868 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP---KAHKSVL 158 (261)
Q Consensus 82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---~~~~~v~ 158 (261)
++|+.+.+|+-...+. ....-.|..-|+++.|+|||+++++++.||++.+||-.+++.+..+. .|.+.|+
T Consensus 167 sdDn~v~ffeGPPFKF-------k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIf 239 (603)
T KOG0318|consen 167 SDDNTVAFFEGPPFKF-------KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIF 239 (603)
T ss_pred cCCCeEEEeeCCCeee-------eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEE
Confidence 9999999998654432 12333466789999999999999999999999999999999877766 6778999
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC--CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868 159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD--EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (261)
Q Consensus 159 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~ 236 (261)
+++|+||++.+++++.|.+++|||+.+.++++++..... ..-..+.|- +.. +++.+-+|+|.+++...++.
T Consensus 240 alsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~-----lItVSl~G~in~ln~~d~~~ 312 (603)
T KOG0318|consen 240 ALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDH-----LITVSLSGTINYLNPSDPSV 312 (603)
T ss_pred EEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCe-----EEEEEcCcEEEEecccCCCh
Confidence 999999999999999999999999999999998875432 122334464 333 57888899999999999998
Q ss_pred EeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 237 IGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 237 ~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+..+.+|...|+++..+||+++|.+
T Consensus 313 ~~~i~GHnK~ITaLtv~~d~~~i~S 337 (603)
T KOG0318|consen 313 LKVISGHNKSITALTVSPDGKTIYS 337 (603)
T ss_pred hheecccccceeEEEEcCCCCEEEe
Confidence 8899999999999999999998863
No 44
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.9e-28 Score=170.06 Aligned_cols=225 Identities=16% Similarity=0.214 Sum_probs=165.2
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
.+++|..+.|+.+ .++.+++|.+. .+..|++..+.+ .....+|...|..++.+.|...+++++
T Consensus 16 ~qgaV~avryN~d---GnY~ltcGsdr--------tvrLWNp~rg~l------iktYsghG~EVlD~~~s~Dnskf~s~G 78 (307)
T KOG0316|consen 16 AQGAVRAVRYNVD---GNYCLTCGSDR--------TVRLWNPLRGAL------IKTYSGHGHEVLDAALSSDNSKFASCG 78 (307)
T ss_pred cccceEEEEEccC---CCEEEEcCCCc--------eEEeecccccce------eeeecCCCceeeeccccccccccccCC
Confidence 4789999999986 77999999999 999999998887 778899999999999999999999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCc--eEEeeccccCCceeEE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL--RIILDEPKAHKSVLDM 160 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~v~~~ 160 (261)
.|..+.+||+.+++.. ...-.|...|+.++|+.+...+++|+.|.++++||.++. ++++.+......|.++
T Consensus 79 gDk~v~vwDV~TGkv~-------Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si 151 (307)
T KOG0316|consen 79 GDKAVQVWDVNTGKVD-------RRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSI 151 (307)
T ss_pred CCceEEEEEcccCeee-------eecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEE
Confidence 9999999999999862 223345689999999999999999999999999998754 3333333333444444
Q ss_pred EEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEE------------------------
Q 024868 161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC------------------------ 216 (261)
Q Consensus 161 ~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~------------------------ 216 (261)
..+ +..|++|+.||+++.||++.|+...-.. +.||++++|++|++..++-+
T Consensus 152 ~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~---g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn 226 (307)
T KOG0316|consen 152 DVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF---GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKN 226 (307)
T ss_pred Eec--ccEEEeeccCCcEEEEEeecceeehhhc---CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccc
Confidence 443 3345555555555555555544332222 22455555555544311110
Q ss_pred ---------------EEeeCCCcEEEEEECCCCeEEeeeeccCcC-eeEEEEeeCC
Q 024868 217 ---------------TVQRGDKALLAVYDISTWNKIGHKRLLRKP-ASVLSISLDG 256 (261)
Q Consensus 217 ---------------~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~s~dg 256 (261)
++++++||.+++||+.....+..+..+... +.+++++|.-
T Consensus 227 ~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~ 282 (307)
T KOG0316|consen 227 MEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTM 282 (307)
T ss_pred ceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCc
Confidence 467999999999999988887777766665 7888888854
No 45
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=2.2e-29 Score=181.40 Aligned_cols=221 Identities=14% Similarity=0.254 Sum_probs=180.1
Q ss_pred CCCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCC------------ceecCCeEEeeecCCCCCceEE
Q 024868 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTT------------SVYTSPLVTYVFDESEGDPMTI 69 (261)
Q Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~~~~~~~~v~~~ 69 (261)
+.++|+.+.+|+|+ +.++++|+.|. .|..+|.+.. ......-....+-.|.+.|+++
T Consensus 110 ~HK~~cR~aafs~D---G~lvATGsaD~--------SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l 178 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPD---GSLVATGSADA--------SIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDL 178 (430)
T ss_pred ecccceeeeeeCCC---CcEEEccCCcc--------eEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccce
Confidence 45789999999996 67999999988 6666665410 0001111234677899999999
Q ss_pred EECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee
Q 024868 70 AVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD 149 (261)
Q Consensus 70 ~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 149 (261)
.|+|....|++++.|++|++||+..... .+..+.+....+|.++.|+|.|.+|++|....++++||+++-++...
T Consensus 179 ~FHPre~ILiS~srD~tvKlFDfsK~sa-----KrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs 253 (430)
T KOG0640|consen 179 DFHPRETILISGSRDNTVKLFDFSKTSA-----KRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS 253 (430)
T ss_pred eecchhheEEeccCCCeEEEEecccHHH-----HHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee
Confidence 9999999999999999999999976542 11244555668999999999999999999999999999999877543
Q ss_pred cc---ccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee-cCCCceEEEEEecCCCcceEEEEEeeCCCcE
Q 024868 150 EP---KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225 (261)
Q Consensus 150 ~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~ 225 (261)
-. .|.+.|.++.+++.|++.++++.||.|++||--+++++.++.. |.+..|.+..|..+|++ +++++.|..
T Consensus 254 anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ky-----iLsSG~DS~ 328 (430)
T KOG0640|consen 254 ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKY-----ILSSGKDST 328 (430)
T ss_pred cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeE-----EeecCCcce
Confidence 32 3456899999999999999999999999999999999988864 44567999999999999 789999999
Q ss_pred EEEEECCCCeEEeeeecc
Q 024868 226 LAVYDISTWNKIGHKRLL 243 (261)
Q Consensus 226 i~~~d~~~~~~~~~~~~~ 243 (261)
+++|.+.+++.+....+.
T Consensus 329 vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 329 VKLWEISTGRMLKEYTGA 346 (430)
T ss_pred eeeeeecCCceEEEEecC
Confidence 999999999988766654
No 46
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-29 Score=177.84 Aligned_cols=229 Identities=18% Similarity=0.141 Sum_probs=180.6
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC-CCCeEEEEec
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTT 83 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 83 (261)
--++.++|++.. .+.++++.+|| .+..||..... .+.+.+++|...|.++.|++ ++..+++++-
T Consensus 61 D~LfdV~Wse~~--e~~~~~a~GDG--------SLrl~d~~~~s-----~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSW 125 (311)
T KOG0277|consen 61 DGLFDVAWSENH--ENQVIAASGDG--------SLRLFDLTMPS-----KPIHKFKEHKREVYSVDWNTVRRRIFLTSSW 125 (311)
T ss_pred cceeEeeecCCC--cceEEEEecCc--------eEEEeccCCCC-----cchhHHHhhhhheEEeccccccceeEEeecc
Confidence 346789999875 56777777888 77778843322 23557899999999999998 5667788899
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 162 (261)
|++|++|+...+... .....|...|+..+|+| ...++++++.|+++++||++.......+..|..++.++.|
T Consensus 126 D~TiKLW~~~r~~Sv-------~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw 198 (311)
T KOG0277|consen 126 DGTIKLWDPNRPNSV-------QTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDW 198 (311)
T ss_pred CCceEeecCCCCcce-------EeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecc
Confidence 999999998766541 11233567899999999 6789999999999999999876555557777779999999
Q ss_pred cC-CCCEEEEecCCCcEEEEEccCC-cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe-EEee
Q 024868 163 SL-DSEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGH 239 (261)
Q Consensus 163 s~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~ 239 (261)
+. +.+.+++++.|+.|++||+++- .++.++.+|.- .|+.+.|||...-+ +++++.|-++++||...+. .+.+
T Consensus 199 ~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~-AVRkvk~Sph~~~l----LaSasYDmT~riw~~~~~ds~~e~ 273 (311)
T KOG0277|consen 199 SKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGL-AVRKVKFSPHHASL----LASASYDMTVRIWDPERQDSAIET 273 (311)
T ss_pred cccCCcEEEecCCCceEEEEehhhccccceeecCCce-EEEEEecCcchhhH----hhhccccceEEecccccchhhhhh
Confidence 88 6778999999999999999974 56777876654 69999999987764 6899999999999998554 4445
Q ss_pred eeccCcCeeEEEEeeC-CCEEe
Q 024868 240 KRLLRKPASVLSISLD-GKYLA 260 (261)
Q Consensus 240 ~~~~~~~v~~~~~s~d-g~~la 260 (261)
...|...+..+.||+- ..++|
T Consensus 274 ~~~HtEFv~g~Dws~~~~~~vA 295 (311)
T KOG0277|consen 274 VDHHTEFVCGLDWSLFDPGQVA 295 (311)
T ss_pred hhccceEEeccccccccCceee
Confidence 5677788888888874 33444
No 47
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.6e-29 Score=201.55 Aligned_cols=236 Identities=13% Similarity=0.171 Sum_probs=184.4
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcC------C-----------------------C-C---c-
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDP------K-----------------------T-T---S- 48 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~------~-----------------------~-~---~- 48 (261)
..|.|.++.|+++ +.++|+||.|+-. +||..-. . . . .
T Consensus 266 h~gaIw~mKFS~D---GKyLAsaGeD~vi------rVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 266 HKGAIWAMKFSHD---GKYLASAGEDGVI------RVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred cCCcEEEEEeCCC---CceeeecCCCceE------EEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 4689999999996 7899999999922 4444322 0 0 0 0
Q ss_pred ------------------eecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCC
Q 024868 49 ------------------VYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ 110 (261)
Q Consensus 49 ------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 110 (261)
....+.+.+.+.+|.+.|.++.|+.++ +|++++.|.+|++|++....+ +..+.
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~C--------L~~F~ 407 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKEC--------LKVFS 407 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcce--------eeEEe
Confidence 000113345778999999999999765 788999999999999998887 77888
Q ss_pred CCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEE
Q 024868 111 DAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW 189 (261)
Q Consensus 111 ~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~ 189 (261)
|...|+|++|+| |.++|++|+-|+.++||++...+. ......+.-|++++|.|||++.+.|+.+|.+++|+....+..
T Consensus 408 HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~V-v~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 408 HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKV-VDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLV 486 (712)
T ss_pred cCCeeEEEEecccCCCcEeecccccceEEeecCcCee-EeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEE
Confidence 999999999999 889999999999999999987665 445556678999999999999999999999999999876655
Q ss_pred EEEeec-------CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccC--cCeeEEEEeeCCCEEe
Q 024868 190 TFLTRN-------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR--KPASVLSISLDGKYLA 260 (261)
Q Consensus 190 ~~~~~~-------~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~v~~~~~s~dg~~la 260 (261)
.....+ ....|+++.|.|...-- ++..+.|..|+|||.++.+++..+.+.. ..-....|++||++|+
T Consensus 487 ~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~----vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IV 562 (712)
T KOG0283|consen 487 SDFHIRLHNKKKKQGKRITGLQFFPGDPDE----VLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIV 562 (712)
T ss_pred EeeeEeeccCccccCceeeeeEecCCCCCe----EEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEE
Confidence 444321 12269999999865531 4667788999999998877776666544 2345688999999987
Q ss_pred C
Q 024868 261 M 261 (261)
Q Consensus 261 ~ 261 (261)
+
T Consensus 563 s 563 (712)
T KOG0283|consen 563 S 563 (712)
T ss_pred E
Confidence 3
No 48
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=5e-28 Score=208.12 Aligned_cols=232 Identities=14% Similarity=0.133 Sum_probs=180.1
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCcee--cCCeEEeeecCCCCCceEEEECC-CCCeEE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY--TSPLVTYVFDESEGDPMTIAVNP-SGDDFV 79 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 79 (261)
..++|++++|+|+ ..++++|+.++ .|..|+....... ........+. +...+.+++|+| ++.+|+
T Consensus 482 ~~~~V~~i~fs~d---g~~latgg~D~--------~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~la 549 (793)
T PLN00181 482 SSNLVCAIGFDRD---GEFFATAGVNK--------KIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVA 549 (793)
T ss_pred CCCcEEEEEECCC---CCEEEEEeCCC--------EEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEE
Confidence 3678999999985 56899999999 7777775431100 0001112233 346789999987 578899
Q ss_pred EEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeeccccCCcee
Q 024868 80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL 158 (261)
Q Consensus 80 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~ 158 (261)
+++.||+|++||+.++... .....|...|.+++|+| ++.+|++++.|+.|++||++++..+..+. ++..+.
T Consensus 550 s~~~Dg~v~lWd~~~~~~~-------~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-~~~~v~ 621 (793)
T PLN00181 550 SSNFEGVVQVWDVARSQLV-------TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-TKANIC 621 (793)
T ss_pred EEeCCCeEEEEECCCCeEE-------EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-cCCCeE
Confidence 9999999999999876531 11224668899999997 78999999999999999999887765544 446789
Q ss_pred EEEEc-CCCCEEEEecCCCcEEEEEccCCc-EEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC--
Q 024868 159 DMDFS-LDSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-- 234 (261)
Q Consensus 159 ~~~~s-~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~-- 234 (261)
++.|+ +++.+|++|+.|+.|++||+++++ ++..+..|.. .|.++.|. ++.+ +++++.|++|++||++.+
T Consensus 622 ~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~~~-----lvs~s~D~~ikiWd~~~~~~ 694 (793)
T PLN00181 622 CVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DSST-----LVSSSTDNTLKLWDLSMSIS 694 (793)
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CCCE-----EEEEECCCEEEEEeCCCCcc
Confidence 99995 579999999999999999998765 4556666654 69999997 5666 688999999999999743
Q ss_pred ----eEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 235 ----NKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 235 ----~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+.+..+..|...+..++|+|++++||+
T Consensus 695 ~~~~~~l~~~~gh~~~i~~v~~s~~~~~las 725 (793)
T PLN00181 695 GINETPLHSFMGHTNVKNFVGLSVSDGYIAT 725 (793)
T ss_pred ccCCcceEEEcCCCCCeeEEEEcCCCCEEEE
Confidence 456677788888999999999999874
No 49
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=8e-28 Score=194.66 Aligned_cols=229 Identities=9% Similarity=0.051 Sum_probs=167.0
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCce--ecCCeEEeeecCCCCCceEEEECCCCCeE-EE
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSV--YTSPLVTYVFDESEGDPMTIAVNPSGDDF-VC 80 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~ 80 (261)
.++|.+++|+|.. .+++++|+.|+ .|..||..+... .........+.+|...|.+++|+|++..+ ++
T Consensus 74 ~~~V~~lafsP~~--~~lLASgS~Dg--------tIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaS 143 (568)
T PTZ00420 74 TSSILDLQFNPCF--SEILASGSEDL--------TIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCS 143 (568)
T ss_pred CCCEEEEEEcCCC--CCEEEEEeCCC--------eEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEE
Confidence 5789999999852 56899999999 888888754321 00011234578899999999999998764 68
Q ss_pred EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCcee--
Q 024868 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL-- 158 (261)
Q Consensus 81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~-- 158 (261)
++.|++|++||+.++... ..+.+...|.+++|+|+|++|++++.|+.|++||+++++.+..+..|.+.+.
T Consensus 144 gS~DgtIrIWDl~tg~~~--------~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~ 215 (568)
T PTZ00420 144 SGFDSFVNIWDIENEKRA--------FQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTK 215 (568)
T ss_pred EeCCCeEEEEECCCCcEE--------EEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeE
Confidence 899999999999887641 1122356799999999999999999999999999999988777777765432
Q ss_pred ---EEEEcCCCCEEEEecCCC----cEEEEEccC-CcEEEEEeecCCCceEEEEEecC-CCcceEEEEEeeCCCcEEEEE
Q 024868 159 ---DMDFSLDSEFLATTSTDG----SARIWKTED-GVAWTFLTRNSDEKIELCRFSKD-GTKPFLFCTVQRGDKALLAVY 229 (261)
Q Consensus 159 ---~~~~s~~~~~l~~~~~d~----~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~p~-~~~~~~~~~~~~~~d~~i~~~ 229 (261)
...|++++.+|++++.|+ +|+|||+++ ++++..+..+....+....|.++ |.+ +++|..|++|++|
T Consensus 216 ~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l-----~lsGkGD~tIr~~ 290 (568)
T PTZ00420 216 NIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLI-----YLIGKGDGNCRYY 290 (568)
T ss_pred EEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCE-----EEEEECCCeEEEE
Confidence 234568999999877664 799999995 66666654333222222334444 554 5788899999999
Q ss_pred ECCCCeEEeeee--ccCcCeeEEEEeeCC
Q 024868 230 DISTWNKIGHKR--LLRKPASVLSISLDG 256 (261)
Q Consensus 230 d~~~~~~~~~~~--~~~~~v~~~~~s~dg 256 (261)
++..+... .+. .+..+...++|.|.-
T Consensus 291 e~~~~~~~-~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 291 QHSLGSIR-KVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EccCCcEE-eecccccCCCccceEEcccc
Confidence 99876532 222 244677888998853
No 50
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=1.2e-28 Score=184.55 Aligned_cols=225 Identities=15% Similarity=0.223 Sum_probs=190.8
Q ss_pred eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCc
Q 024868 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (261)
Q Consensus 7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 86 (261)
++.+...|. .+.+.+||.|. .+..||....++ ...+++|...|+.+.++|+...+++++.|..
T Consensus 222 i~ald~~~s---~~~ilTGG~d~--------~av~~d~~s~q~------l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~ 284 (506)
T KOG0289|consen 222 ITALDIIPS---SSKILTGGEDK--------TAVLFDKPSNQI------LATLKGHTKKITSVKFHKDLDTVITASADEI 284 (506)
T ss_pred eeEEeecCC---CCcceecCCCC--------ceEEEecchhhh------hhhccCcceEEEEEEeccchhheeecCCcce
Confidence 444444442 56888999988 778888887776 5679999999999999999999999999999
Q ss_pred EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC--CceeEEEEcC
Q 024868 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH--KSVLDMDFSL 164 (261)
Q Consensus 87 i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~v~~~~~s~ 164 (261)
|++|....... ......|.++|+.+..+|.|.||++++.|++..+.|++++..+....... -.+++.+|+|
T Consensus 285 i~vws~~~~s~-------~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp 357 (506)
T KOG0289|consen 285 IRVWSVPLSSE-------PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP 357 (506)
T ss_pred EEeeccccccC-------ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC
Confidence 99999977653 23344567899999999999999999999999999999998765544322 2689999999
Q ss_pred CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccC
Q 024868 165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244 (261)
Q Consensus 165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~ 244 (261)
||.+|.+|..|+.++|||+.++..+..|.+|.. +|..++|+.+|-+ ++++.+|+.|++||+|.-+..+++....
T Consensus 358 DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~-----Lat~add~~V~lwDLRKl~n~kt~~l~~ 431 (506)
T KOG0289|consen 358 DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYW-----LATAADDGSVKLWDLRKLKNFKTIQLDE 431 (506)
T ss_pred CceEEeccCCCceEEEEEcCCccccccCCCCCC-ceeEEEeccCceE-----EEEEecCCeEEEEEehhhcccceeeccc
Confidence 999999999999999999999999999998655 7999999999988 7999999999999999888776666443
Q ss_pred -cCeeEEEEeeCCCEEeC
Q 024868 245 -KPASVLSISLDGKYLAM 261 (261)
Q Consensus 245 -~~v~~~~~s~dg~~la~ 261 (261)
.++.++.|.+.|++|+.
T Consensus 432 ~~~v~s~~fD~SGt~L~~ 449 (506)
T KOG0289|consen 432 KKEVNSLSFDQSGTYLGI 449 (506)
T ss_pred cccceeEEEcCCCCeEEe
Confidence 47999999999999873
No 51
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4.7e-28 Score=191.86 Aligned_cols=231 Identities=16% Similarity=0.179 Sum_probs=190.8
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
..|+.++|--+ ..+.++++...+ ++..|+..+.. ...+.+|++.|.+++...+|.+|++++.|
T Consensus 324 dEI~Dm~~lG~--e~~~laVATNs~--------~lr~y~~~~~~-------c~ii~GH~e~vlSL~~~~~g~llat~sKD 386 (775)
T KOG0319|consen 324 DEILDMKFLGP--EESHLAVATNSP--------ELRLYTLPTSY-------CQIIPGHTEAVLSLDVWSSGDLLATGSKD 386 (775)
T ss_pred hhheeeeecCC--ccceEEEEeCCC--------ceEEEecCCCc-------eEEEeCchhheeeeeecccCcEEEEecCC
Confidence 45677777543 256777777777 77777777766 34789999999999977788999999999
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCCeEEEEEccCceEE-----e----eccccC
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRII-----L----DEPKAH 154 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~-----~----~~~~~~ 154 (261)
.++++|.++.+....... .....|.+.|.+++++..+ .+|++++.|.++++|++...+.. . ....|.
T Consensus 387 ~svilWr~~~~~~~~~~~---a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHd 463 (775)
T KOG0319|consen 387 KSVILWRLNNNCSKSLCV---AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHD 463 (775)
T ss_pred ceEEEEEecCCcchhhhh---hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhc
Confidence 999999995554322211 2334567889999998754 68999999999999999762211 1 123466
Q ss_pred CceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (261)
Q Consensus 155 ~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~ 234 (261)
..|.+++.+|+.+++|+||.|.+.+||++.+.+...++.+|..+ ++++.|+|..+. +++++.|.+|+||.+.+.
T Consensus 464 KdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RG-vw~V~Fs~~dq~-----laT~SgD~TvKIW~is~f 537 (775)
T KOG0319|consen 464 KDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRG-VWCVSFSKNDQL-----LATCSGDKTVKIWSISTF 537 (775)
T ss_pred ccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccc-eEEEEeccccce-----eEeccCCceEEEEEeccc
Confidence 78999999999999999999999999999999999999999875 999999999987 799999999999999999
Q ss_pred eEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 235 NKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 235 ~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
.+++++.+|...|..++|-.+|+.|++
T Consensus 538 SClkT~eGH~~aVlra~F~~~~~qliS 564 (775)
T KOG0319|consen 538 SCLKTFEGHTSAVLRASFIRNGKQLIS 564 (775)
T ss_pred eeeeeecCccceeEeeeeeeCCcEEEe
Confidence 999999999999999999999998863
No 52
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=4.6e-27 Score=190.29 Aligned_cols=199 Identities=9% Similarity=0.100 Sum_probs=143.9
Q ss_pred EeeecCCCCCceEEEECCC-CCeEEEEecCCcEEEEEEeCCcccccee-eeeCCCCCCCCCeEEEEEeeCCcE-EEEecc
Q 024868 56 TYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLL-AKKMPPLQDAGPQKCLSFSVDGSR-FAAGGV 132 (261)
Q Consensus 56 ~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~ 132 (261)
...+.+|.+.|.+++|+|+ +++|++|+.|++|++||+.......... ........|...|.+++|+|++.. +++++.
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~ 146 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF 146 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC
Confidence 4568899999999999996 7899999999999999997643211100 000112345688999999998876 468889
Q ss_pred CCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCc----eEEEEEecC
Q 024868 133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK----IELCRFSKD 208 (261)
Q Consensus 133 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----v~~~~~~p~ 208 (261)
|++|++||+++++....+. ++..|.+++|+|+|++|++++.|+.|+|||+++++.+..+..|.+.. +....|+++
T Consensus 147 DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d 225 (568)
T PTZ00420 147 DSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD 225 (568)
T ss_pred CCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence 9999999999888665543 55689999999999999999999999999999999998888776531 122335588
Q ss_pred CCcceEEEEEeeCCC----cEEEEEECCC-CeEEeeeeccC--cCeeEEEEeeCCCEEe
Q 024868 209 GTKPFLFCTVQRGDK----ALLAVYDIST-WNKIGHKRLLR--KPASVLSISLDGKYLA 260 (261)
Q Consensus 209 ~~~~~~~~~~~~~~d----~~i~~~d~~~-~~~~~~~~~~~--~~v~~~~~s~dg~~la 260 (261)
+.+ +++++.+ ++|++||+++ .+++....... +.+......++|.+++
T Consensus 226 ~~~-----IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~l 279 (568)
T PTZ00420 226 DNY-----ILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYL 279 (568)
T ss_pred CCE-----EEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEE
Confidence 887 4555444 4899999995 45554433222 2222232334466554
No 53
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=5.9e-28 Score=177.91 Aligned_cols=235 Identities=14% Similarity=0.172 Sum_probs=185.6
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
++||.+++|....+....+++++.|. .+.+|.|+........ ...-.+|...|.+++..++|.++++|+.
T Consensus 144 t~~ik~v~~v~~n~~~~~fvsas~Dq------tl~Lw~~~~~~~~~~~----~~~~~GHk~~V~sVsv~~sgtr~~SgS~ 213 (423)
T KOG0313|consen 144 TGPIKSVAWVIKNSSSCLFVSASMDQ------TLRLWKWNVGENKVKA----LKVCRGHKRSVDSVSVDSSGTRFCSGSW 213 (423)
T ss_pred CcceeeeEEEecCCccceEEEecCCc------eEEEEEecCchhhhhH----HhHhcccccceeEEEecCCCCeEEeecc
Confidence 68999999976554455788998887 3377888876655411 2233499999999999999999999999
Q ss_pred CCcEEEEEEeCCccc--------------c----ceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCce
Q 024868 84 NGGCKLFEVYGGATD--------------I----NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR 145 (261)
Q Consensus 84 dg~i~i~~~~~~~~~--------------~----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~ 145 (261)
|..|.+|+....... . ..-.+......|..+|.++.|++ ...+++++.|.+|+.||+.+++
T Consensus 214 D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~ 292 (423)
T KOG0313|consen 214 DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG 292 (423)
T ss_pred cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccc
Confidence 999999993321110 0 00001112234678999999998 6688999999999999999998
Q ss_pred EEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCc---EEEEEeecCCCceEEEEEecCCCcceEEEEEeeCC
Q 024868 146 IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV---AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD 222 (261)
Q Consensus 146 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~ 222 (261)
.+..+ .....+.+++.+|..++|++|+.|..+++||.+++. ..+++.+|.+ .|.++.|+|.+.+. +++++.
T Consensus 293 ~~~~~-~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~----~~S~S~ 366 (423)
T KOG0313|consen 293 LKSTL-TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQ----LVSGSY 366 (423)
T ss_pred ceeee-ecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceE----EEEEec
Confidence 86544 445689999999999999999999999999999753 4456777766 79999999999875 589999
Q ss_pred CcEEEEEECCCCe-EEeeeeccCcCeeEEEEeeC
Q 024868 223 KALLAVYDISTWN-KIGHKRLLRKPASVLSISLD 255 (261)
Q Consensus 223 d~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~s~d 255 (261)
|+++++||+++.+ ++..+..|...|.++.|+.-
T Consensus 367 D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~ 400 (423)
T KOG0313|consen 367 DNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG 400 (423)
T ss_pred CCeEEEEEeccCCCcceeeccCCceEEEEeccCC
Confidence 9999999999887 78888999999999999764
No 54
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=9.7e-28 Score=178.75 Aligned_cols=230 Identities=13% Similarity=0.123 Sum_probs=178.7
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
...|.-+.|+++ +.++|+++.|... -+|....+.. + .....+.+|..+|..+.||||.++|++++.
T Consensus 224 tdEVWfl~FS~n---GkyLAsaSkD~Ta------iiw~v~~d~~-~----kl~~tlvgh~~~V~yi~wSPDdryLlaCg~ 289 (519)
T KOG0293|consen 224 TDEVWFLQFSHN---GKYLASASKDSTA------IIWIVVYDVH-F----KLKKTLVGHSQPVSYIMWSPDDRYLLACGF 289 (519)
T ss_pred CCcEEEEEEcCC---CeeEeeccCCceE------EEEEEecCcc-e----eeeeeeecccCceEEEEECCCCCeEEecCc
Confidence 456888899885 7899999998833 4555544443 1 335678899999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC-CceeEEEE
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDMDF 162 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~ 162 (261)
+..+.+||..++...... ...+...+.+++|.|||..+++|+.|+++..||++ +.......+-. ..|.+++.
T Consensus 290 ~e~~~lwDv~tgd~~~~y------~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlai 362 (519)
T KOG0293|consen 290 DEVLSLWDVDTGDLRHLY------PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAI 362 (519)
T ss_pred hHheeeccCCcchhhhhc------ccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEE
Confidence 999999999998762221 11123678999999999999999999999999985 43333333333 36999999
Q ss_pred cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEE---------------------------
Q 024868 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF--------------------------- 215 (261)
Q Consensus 163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~--------------------------- 215 (261)
++||+++++.+.|..|++++..+.........+ .++++.+.|.|+++ +++
T Consensus 363 t~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~--~~its~~iS~d~k~-~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~ 439 (519)
T KOG0293|consen 363 TYDGKYVLLVTVDKKIRLYNREARVDRGLISEE--QPITSFSISKDGKL-ALVNLQDQEIHLWDLEENKLVRKYFGHKQG 439 (519)
T ss_pred cCCCcEEEEEecccceeeechhhhhhhcccccc--CceeEEEEcCCCcE-EEEEcccCeeEEeecchhhHHHHhhccccc
Confidence 999999999999999999998765544333322 24677777766665 222
Q ss_pred --------------EEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCC
Q 024868 216 --------------CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK 257 (261)
Q Consensus 216 --------------~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~ 257 (261)
.+++|++|+.|+||+..+++++..+.+|...|.+++|+|...
T Consensus 440 ~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p 495 (519)
T KOG0293|consen 440 HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADP 495 (519)
T ss_pred ceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCH
Confidence 246799999999999999999999999999999999999654
No 55
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.5e-29 Score=182.38 Aligned_cols=236 Identities=16% Similarity=0.183 Sum_probs=190.9
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCC--eEEeeecCCCCCceEEEECCCCCeEEEE
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSP--LVTYVFDESEGDPMTIAVNPSGDDFVCS 81 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 81 (261)
+.-+-|..|+|+ ..++++|+.|| .|-+||..++++.... .....+--+.++|.|+.|+.|...+++|
T Consensus 213 KSh~EcA~FSPD---gqyLvsgSvDG--------FiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsG 281 (508)
T KOG0275|consen 213 KSHVECARFSPD---GQYLVSGSVDG--------FIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASG 281 (508)
T ss_pred ccchhheeeCCC---CceEeeccccc--------eeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhcc
Confidence 456778999996 67999999999 6666666666543221 1222344567899999999999999999
Q ss_pred ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEE
Q 024868 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (261)
Q Consensus 82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~ 161 (261)
+.||.|++|.+.++.+..++. ..|...|+++.||.|+..+++++.|.++++--+++|+.+..+.+|.+.|....
T Consensus 282 sqDGkIKvWri~tG~ClRrFd------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ 355 (508)
T KOG0275|consen 282 SQDGKIKVWRIETGQCLRRFD------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEAT 355 (508)
T ss_pred CcCCcEEEEEEecchHHHHhh------hhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceE
Confidence 999999999999998844332 13567899999999999999999999999999999999988999999999999
Q ss_pred EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecC---------------------------------------------
Q 024868 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS--------------------------------------------- 196 (261)
Q Consensus 162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------------------------------------------- 196 (261)
|++||.++++++.||+|++|+.++.+++.+++...
T Consensus 356 ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkR 435 (508)
T KOG0275|consen 356 FTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKR 435 (508)
T ss_pred EcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCc
Confidence 99999999999999999999998776654443210
Q ss_pred -CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 197 -DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 197 -~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
++..-+++.+|.|.+ +...++|+.++.|...+|+...++..|+..+-.++-+|.-+.||+
T Consensus 436 EgGdFi~~~lSpkGew-----iYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAs 496 (508)
T KOG0275|consen 436 EGGDFINAILSPKGEW-----IYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLAS 496 (508)
T ss_pred cCCceEEEEecCCCcE-----EEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhh
Confidence 111235667888888 577889999999999999998888889888888888887776653
No 56
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.3e-28 Score=194.92 Aligned_cols=228 Identities=12% Similarity=0.153 Sum_probs=189.9
Q ss_pred CCCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE
Q 024868 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81 (261)
Q Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 81 (261)
+..|||..++|+|. +.++++||.|- +|.+|+.+...+ ...+.+|-+-|..+.|++.-.+++++
T Consensus 49 eHdGpVRgv~FH~~---qplFVSGGDDy--------kIkVWnYk~rrc------lftL~GHlDYVRt~~FHheyPWIlSA 111 (1202)
T KOG0292|consen 49 EHDGPVRGVDFHPT---QPLFVSGGDDY--------KIKVWNYKTRRC------LFTLLGHLDYVRTVFFHHEYPWILSA 111 (1202)
T ss_pred ccCCccceeeecCC---CCeEEecCCcc--------EEEEEeccccee------hhhhccccceeEEeeccCCCceEEEc
Confidence 46799999999995 67999998888 666676666665 66789999999999999999999999
Q ss_pred ecCCcEEEEEEeCCccccceeeeeCCCC-CCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCce---------------
Q 024868 82 TTNGGCKLFEVYGGATDINLLAKKMPPL-QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR--------------- 145 (261)
Q Consensus 82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~--------------- 145 (261)
++|.+|+||+..+..+ +..+ .|...|.|.+|+|....+++++-|.+|++||+.-.+
T Consensus 112 SDDQTIrIWNwqsr~~--------iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~ 183 (1202)
T KOG0292|consen 112 SDDQTIRIWNWQSRKC--------IAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRG 183 (1202)
T ss_pred cCCCeEEEEeccCCce--------EEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhc
Confidence 9999999999999876 2222 355789999999999999999999999999984110
Q ss_pred -------------EE-eeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcE--EEEEeecCCCceEEEEEecCC
Q 024868 146 -------------II-LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDG 209 (261)
Q Consensus 146 -------------~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~p~~ 209 (261)
.+ ..+.+|...|.-++|+|.-.++++|++|..|++|.+..-+. +.+..+|.+ .|.++-|+|..
T Consensus 184 ~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~q 262 (1202)
T KOG0292|consen 184 QQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPHQ 262 (1202)
T ss_pred cccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC-CcceEEecCcc
Confidence 01 12234556799999999999999999999999999975442 345566666 69999999988
Q ss_pred CcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 210 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
.. +++.++|++|++||+...+.+.++.......+.++-+|..+.+|
T Consensus 263 ~l-----IlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfA 308 (1202)
T KOG0292|consen 263 DL-----ILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFA 308 (1202)
T ss_pred ce-----eEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceee
Confidence 87 79999999999999999998888877778889999999888776
No 57
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=9e-29 Score=173.15 Aligned_cols=234 Identities=15% Similarity=0.206 Sum_probs=197.0
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
..||-.++|+|--....++++++.|+ +=..-+.+++.+ .-.+.+|.+.|.....+.+..+.++++.
T Consensus 14 trpvvdl~~s~itp~g~flisa~kd~--------~pmlr~g~tgdw------igtfeghkgavw~~~l~~na~~aasaaa 79 (334)
T KOG0278|consen 14 TRPVVDLAFSPITPDGYFLISASKDG--------KPMLRNGDTGDW------IGTFEGHKGAVWSATLNKNATRAASAAA 79 (334)
T ss_pred CcceeEEeccCCCCCceEEEEeccCC--------CchhccCCCCCc------EEeeeccCcceeeeecCchhhhhhhhcc
Confidence 57899999988766788899999988 555556777777 6679999999999999999988999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE-EeeccccCCceeEEEE
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-ILDEPKAHKSVLDMDF 162 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~ 162 (261)
|=+-++||.-++.. +..+.|+.-|..++|+.|.++|++|+.+.-+++||++..+. ...+.+|.+.|..+-|
T Consensus 80 dftakvw~a~tgde--------lhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~w 151 (334)
T KOG0278|consen 80 DFTAKVWDAVTGDE--------LHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLW 151 (334)
T ss_pred cchhhhhhhhhhhh--------hhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEE
Confidence 99999999998875 77788888999999999999999999999999999987653 3456677789999999
Q ss_pred cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEE---------------------------
Q 024868 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF--------------------------- 215 (261)
Q Consensus 163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~--------------------------- 215 (261)
....+.++++++|+.|++||.+++..++++... .+|+++..+++|+++.+.
T Consensus 152 c~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~--s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~S 229 (334)
T KOG0278|consen 152 CHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN--SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVES 229 (334)
T ss_pred eccCceEEeeccCCceEEEEeccCcEEEEEecC--CCCcceeeccCCCEEEEecCceeEEeccccccceeeccCcccccc
Confidence 998888999899999999999999999888743 347777777777752211
Q ss_pred --------EEEeeCCCcEEEEEECCCCeEEeee-eccCcCeeEEEEeeCCCEEeC
Q 024868 216 --------CTVQRGDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 216 --------~~~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~s~dg~~la~ 261 (261)
..+.|++|..++.||..+++.+... .+|.++|.++.|+|||...|+
T Consensus 230 ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAs 284 (334)
T KOG0278|consen 230 ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYAS 284 (334)
T ss_pred ccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeec
Confidence 1356889999999999999988774 788899999999999987653
No 58
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=2.2e-28 Score=181.93 Aligned_cols=224 Identities=14% Similarity=0.121 Sum_probs=183.3
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
.++|+.++|.++ +..+++++.++ .+..|+.+...+ ...+.+|++.|+++.|......+++|+.
T Consensus 219 ~g~it~~d~d~~---~~~~iAas~d~--------~~r~Wnvd~~r~------~~TLsGHtdkVt~ak~~~~~~~vVsgs~ 281 (459)
T KOG0288|consen 219 LGNITSIDFDSD---NKHVIAASNDK--------NLRLWNVDSLRL------RHTLSGHTDKVTAAKFKLSHSRVVSGSA 281 (459)
T ss_pred CCCcceeeecCC---CceEEeecCCC--------ceeeeeccchhh------hhhhcccccceeeehhhccccceeeccc
Confidence 378999999875 45666666777 677778777766 6789999999999999887777999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
|.+++.||+....+ ....-....+.++..+ ...++++..|++|++||+++......... ++.|+++..+
T Consensus 282 DRtiK~WDl~k~~C--------~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~-gg~vtSl~ls 350 (459)
T KOG0288|consen 282 DRTIKLWDLQKAYC--------SKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPL-GGRVTSLDLS 350 (459)
T ss_pred cchhhhhhhhhhhe--------eccccccccccceEec--ceeeeecccccceEEEeccCCceeeEeec-CcceeeEeec
Confidence 99999999998766 2222223456666665 55788888999999999999888766554 4599999999
Q ss_pred CCCCEEEEecCCCcEEEEEccCCcEEEEEeecC---CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS---DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (261)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~ 240 (261)
+++..+.+++.|..+.+.|+++.+....+.... ....+.+.|||++.| +++|+.||.|+||++.+++.....
T Consensus 351 ~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Y-----vaAGS~dgsv~iW~v~tgKlE~~l 425 (459)
T KOG0288|consen 351 MDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSY-----VAAGSADGSVYIWSVFTGKLEKVL 425 (459)
T ss_pred cCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCce-----eeeccCCCcEEEEEccCceEEEEe
Confidence 999999999999999999999988887775422 224788999999999 799999999999999999988776
Q ss_pred eccCc--CeeEEEEeeCCCEEe
Q 024868 241 RLLRK--PASVLSISLDGKYLA 260 (261)
Q Consensus 241 ~~~~~--~v~~~~~s~dg~~la 260 (261)
..... .|.+++|+|.|.+|+
T Consensus 426 ~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 426 SLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred ccCCCCcceEEEEEcCCCchhh
Confidence 65554 499999999999876
No 59
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=3.2e-28 Score=182.89 Aligned_cols=241 Identities=15% Similarity=0.162 Sum_probs=181.1
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCc--eec--CCeEEeeecCCCCCceEEEECCCC-CeEE
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS--VYT--SPLVTYVFDESEGDPMTIAVNPSG-DDFV 79 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~--~~~--~~~~~~~~~~~~~~v~~~~~~~~~-~~l~ 79 (261)
|.|..+..-|. +.++||+++..+ .+++||..... ... .......+.+|...-++++|++.. -.|+
T Consensus 125 gEVnRaRymPQ--np~iVAt~t~~~--------dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Ll 194 (422)
T KOG0264|consen 125 GEVNRARYMPQ--NPNIVATKTSSG--------DVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLL 194 (422)
T ss_pred ccchhhhhCCC--CCcEEEecCCCC--------CEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEe
Confidence 44555555553 467788777777 66777654321 110 223445788999888899999853 3688
Q ss_pred EEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccC--ceEEeeccccCCc
Q 024868 80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPS--LRIILDEPKAHKS 156 (261)
Q Consensus 80 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~ 156 (261)
+++.|+++.+||+.......+..........|...|..++|+| +..+|++++.|+.+.|||+++ .+.......|..+
T Consensus 195 s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~ 274 (422)
T KOG0264|consen 195 SGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAE 274 (422)
T ss_pred eccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCc
Confidence 9999999999999876653233333333445678999999999 567888999999999999994 4555556677789
Q ss_pred eeEEEEcC-CCCEEEEecCCCcEEEEEccCC-cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868 157 VLDMDFSL-DSEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (261)
Q Consensus 157 v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~ 234 (261)
+.+++|+| ++..||+++.|++|++||+++- +++.++..|.. .|..+.|+|....+ +++++.|+.+.+||+..-
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etv----LASSg~D~rl~vWDls~i 349 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETV----LASSGTDRRLNVWDLSRI 349 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCce----eEecccCCcEEEEecccc
Confidence 99999999 6678899999999999999974 46778887776 59999999998874 688999999999998642
Q ss_pred e--------------EEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 235 N--------------KIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 235 ~--------------~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
. ++..-.+|...|..+.|+|+..+++
T Consensus 350 g~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I 389 (422)
T KOG0264|consen 350 GEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTI 389 (422)
T ss_pred ccccChhhhccCCcceeEEecCcccccccccCCCCCCeEE
Confidence 1 1233446778999999999987764
No 60
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.6e-28 Score=194.47 Aligned_cols=227 Identities=15% Similarity=0.188 Sum_probs=192.9
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
+.+|..++|+|. +..+.++-..| .|..||-..+.+ ...+.+|.++|..++|+|.+.++++|++
T Consensus 9 SsRvKglsFHP~---rPwILtslHsG--------~IQlWDYRM~tl------i~rFdeHdGpVRgv~FH~~qplFVSGGD 71 (1202)
T KOG0292|consen 9 SSRVKGLSFHPK---RPWILTSLHSG--------VIQLWDYRMGTL------IDRFDEHDGPVRGVDFHPTQPLFVSGGD 71 (1202)
T ss_pred cccccceecCCC---CCEEEEeecCc--------eeeeehhhhhhH------HhhhhccCCccceeeecCCCCeEEecCC
Confidence 678999999996 55788887778 788888877776 5678899999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
|-+|++|+.+..++. .....|-..|+.+.|++.--+|++++.|.+|+||+..+++++..+.+|...|.|..|+
T Consensus 72 DykIkVWnYk~rrcl-------ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh 144 (1202)
T KOG0292|consen 72 DYKIKVWNYKTRRCL-------FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH 144 (1202)
T ss_pred ccEEEEEecccceeh-------hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC
Confidence 999999999988862 3344567899999999999999999999999999999999998888888899999999
Q ss_pred CCCCEEEEecCCCcEEEEEccC--------C--------------------c-EEEEEeecCCCceEEEEEecCCCcceE
Q 024868 164 LDSEFLATTSTDGSARIWKTED--------G--------------------V-AWTFLTRNSDEKIELCRFSKDGTKPFL 214 (261)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~--------~--------------------~-~~~~~~~~~~~~v~~~~~~p~~~~~~~ 214 (261)
|....++++|-|.+|++||+.. + - ..+.+.+|.. .|+-++|+|.-..
T Consensus 145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaAfhpTlpl--- 220 (1202)
T KOG0292|consen 145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-GVNWAAFHPTLPL--- 220 (1202)
T ss_pred CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-ccceEEecCCcce---
Confidence 9999999999999999999852 1 0 1123445544 5999999998887
Q ss_pred EEEEeeCCCcEEEEEECCCCeE--EeeeeccCcCeeEEEEeeCCCEEe
Q 024868 215 FCTVQRGDKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 215 ~~~~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
+++|++|+.|++|.+..-+. +.+..+|.+.|+++-|+|.-..++
T Consensus 221 --iVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIl 266 (1202)
T KOG0292|consen 221 --IVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLIL 266 (1202)
T ss_pred --EEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeE
Confidence 79999999999999976553 456778999999999999766554
No 61
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=3e-27 Score=177.05 Aligned_cols=230 Identities=17% Similarity=0.261 Sum_probs=188.9
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
-.|+.+.++|+ ...+++++.+. .|++|....... ......|..+|+.+..+|.|++|++++.|
T Consensus 262 kki~~v~~~~~---~~~v~~aSad~--------~i~vws~~~~s~------~~~~~~h~~~V~~ls~h~tgeYllsAs~d 324 (506)
T KOG0289|consen 262 KKITSVKFHKD---LDTVITASADE--------IIRVWSVPLSSE------PTSSRPHEEPVTGLSLHPTGEYLLSASND 324 (506)
T ss_pred eEEEEEEeccc---hhheeecCCcc--------eEEeeccccccC------ccccccccccceeeeeccCCcEEEEecCC
Confidence 46777788885 55777888887 788887655443 34577899999999999999999999999
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcC
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL 164 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~ 164 (261)
+.....|++++....... .. ...-.+++.+|+|||-.|.+|..|+.+++||+.++.....+.+|.++|..++|+.
T Consensus 325 ~~w~Fsd~~~g~~lt~vs----~~-~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsE 399 (506)
T KOG0289|consen 325 GTWAFSDISSGSQLTVVS----DE-TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSE 399 (506)
T ss_pred ceEEEEEccCCcEEEEEe----ec-cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEecc
Confidence 999999999887522211 11 1224589999999999999999999999999999988888999889999999999
Q ss_pred CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEEC--CCCeEEeeeec
Q 024868 165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI--STWNKIGHKRL 242 (261)
Q Consensus 165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~--~~~~~~~~~~~ 242 (261)
+|-+|+++++|+.|++||++.-+..+++.......+.++.|.+.|++ ++.++.+=+|++++- +++.++..+..
T Consensus 400 NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~-----L~~~g~~l~Vy~~~k~~k~W~~~~~~~~ 474 (506)
T KOG0289|consen 400 NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTY-----LGIAGSDLQVYICKKKTKSWTEIKELAD 474 (506)
T ss_pred CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCe-----EEeecceeEEEEEecccccceeeehhhh
Confidence 99999999999999999999988888887766667999999999998 566777756666653 36777777778
Q ss_pred cCcCeeEEEEeeCCCEEeC
Q 024868 243 LRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 243 ~~~~v~~~~~s~dg~~la~ 261 (261)
|.+....+.|..+-+++++
T Consensus 475 ~sg~st~v~Fg~~aq~l~s 493 (506)
T KOG0289|consen 475 HSGLSTGVRFGEHAQYLAS 493 (506)
T ss_pred cccccceeeecccceEEee
Confidence 8788889999988888763
No 62
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5e-26 Score=164.20 Aligned_cols=191 Identities=15% Similarity=0.192 Sum_probs=154.4
Q ss_pred EeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCe
Q 024868 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH 135 (261)
Q Consensus 56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 135 (261)
...+.+|...|.+++.+|-++.+++++.|++|++||++...+...+ . ...-..++|+|+|-++|++.....
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l--------~-~~~~pi~AfDp~GLifA~~~~~~~ 163 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL--------N-LSGRPIAAFDPEGLIFALANGSEL 163 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE--------e-cCCCcceeECCCCcEEEEecCCCe
Confidence 4567899999999999998899999999999999999977652221 1 112234789999999999987779
Q ss_pred EEEEEccCce--E--Eeecc-ccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCc--eEEEEEecC
Q 024868 136 LRIMHWPSLR--I--ILDEP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK--IELCRFSKD 208 (261)
Q Consensus 136 i~~~d~~~~~--~--~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--v~~~~~~p~ 208 (261)
|++||++.-. + ...+. ....+...+.|||||++++.++..+.+++.|.-+|..+.++..+.... .-+.+|.||
T Consensus 164 IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd 243 (311)
T KOG1446|consen 164 IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD 243 (311)
T ss_pred EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC
Confidence 9999998642 1 11222 234578999999999999999999999999999999988887665431 246789999
Q ss_pred CCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec-cCcCeeEEEEeeCCCEEe
Q 024868 209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-LRKPASVLSISLDGKYLA 260 (261)
Q Consensus 209 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~s~dg~~la 260 (261)
+++ ++++++||+|.+|++++++.+....+ +.+++.++.|+|.-..+|
T Consensus 244 s~F-----vl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~ 291 (311)
T KOG1446|consen 244 SKF-----VLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFV 291 (311)
T ss_pred CcE-----EEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeee
Confidence 998 78999999999999999999887776 578899999999766554
No 63
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=5.9e-27 Score=168.01 Aligned_cols=229 Identities=13% Similarity=0.154 Sum_probs=181.1
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCC-ceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTT-SVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
.-.|.+++|+|. ..+++++|+.|+ +|..|+.+.. .+ . ......|.++|.+++|+.||..+++|+
T Consensus 27 ~DsIS~l~FSP~--~~~~~~A~SWD~--------tVR~wevq~~g~~--~---~ka~~~~~~PvL~v~WsddgskVf~g~ 91 (347)
T KOG0647|consen 27 EDSISALAFSPQ--ADNLLAAGSWDG--------TVRIWEVQNSGQL--V---PKAQQSHDGPVLDVCWSDDGSKVFSGG 91 (347)
T ss_pred ccchheeEeccc--cCceEEecccCC--------ceEEEEEecCCcc--c---chhhhccCCCeEEEEEccCCceEEeec
Confidence 456889999994 478888999999 6666665542 22 1 234667899999999999999999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCc--EEEEeccCCeEEEEEccCceEEeecc---------
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS--RFAAGGVDGHLRIMHWPSLRIILDEP--------- 151 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~--------- 151 (261)
-|+.+++||+.+++. ...-.|..+|..+.|-+... .|++|+.|.+|+.||.+...++..+.
T Consensus 92 ~Dk~~k~wDL~S~Q~--------~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~D 163 (347)
T KOG0647|consen 92 CDKQAKLWDLASGQV--------SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAAD 163 (347)
T ss_pred cCCceEEEEccCCCe--------eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehh
Confidence 999999999999874 33445788999999987554 89999999999999997654331110
Q ss_pred ----------------------------cc----CCceeEEEEcCCCCEEEEecCCCcEEEEEccCC--cEEEEEeecCC
Q 024868 152 ----------------------------KA----HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG--VAWTFLTRNSD 197 (261)
Q Consensus 152 ----------------------------~~----~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~ 197 (261)
.+ +-.+++++..+|....+.|+-+|.+.|..+..+ +.-.+++.|..
T Consensus 164 v~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~ 243 (347)
T KOG0647|consen 164 VLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRS 243 (347)
T ss_pred ccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEecc
Confidence 11 124788888888888899999999999988876 33345555542
Q ss_pred --------CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 198 --------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 198 --------~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
..|++++|+|.... +++.+.||++.+||-.....++....+..+|++..|+.+|.++|
T Consensus 244 ~~~~~~~VYaVNsi~FhP~hgt-----lvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifa 309 (347)
T KOG0647|consen 244 TNSVNDDVYAVNSIAFHPVHGT-----LVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFA 309 (347)
T ss_pred CCCCCCceEEecceEeecccce-----EEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEE
Confidence 24788999997776 69999999999999988888888888999999999999999886
No 64
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1e-26 Score=163.12 Aligned_cols=234 Identities=13% Similarity=0.143 Sum_probs=173.3
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC-CCeEEEEecC
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCSTTN 84 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d 84 (261)
.=|++.|+|--++...+|++..-| ..+.-++++.+.....- +.+..--.-.+.+..++|+++ .+.+++++.|
T Consensus 10 ~GysvqfSPf~~nrLavAt~q~yG---l~G~G~L~ile~~~~~g----i~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GD 82 (311)
T KOG0277|consen 10 HGYSVQFSPFVENRLAVATAQHYG---LAGNGRLFILEVTDPKG----IQECQSYDTEDGLFDVAWSENHENQVIAASGD 82 (311)
T ss_pred ccceeEecccccchhheeehhhcc---cccCceEEEEecCCCCC----eEEEEeeecccceeEeeecCCCcceEEEEecC
Confidence 347888988764444444443211 11122666666642221 112222224578999999995 4567888999
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
|++++||+.....+. .....|...|.++.|++ +++.+++++-|++|++|+...++.+..+.+|...|+...|+
T Consensus 83 GSLrl~d~~~~s~Pi------~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~s 156 (311)
T KOG0277|consen 83 GSLRLFDLTMPSKPI------HKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFS 156 (311)
T ss_pred ceEEEeccCCCCcch------hHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecC
Confidence 999999965443211 22334678999999999 56678888999999999999888888888888899999999
Q ss_pred C-CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe-EEeeee
Q 024868 164 L-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKR 241 (261)
Q Consensus 164 ~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~ 241 (261)
| .++.+++++.|+.+++||++.......+..|.. .+.++.|+.-+..+ +++++.|+.|+.||+++.+ ++..+.
T Consensus 157 p~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~-Eil~cdw~ky~~~v----l~Tg~vd~~vr~wDir~~r~pl~eL~ 231 (311)
T KOG0277|consen 157 PHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNS-EILCCDWSKYNHNV----LATGGVDNLVRGWDIRNLRTPLFELN 231 (311)
T ss_pred CCCCCeEEEccCCceEEEEEecCCCceeEEEeccc-eeEeecccccCCcE----EEecCCCceEEEEehhhccccceeec
Confidence 9 678999999999999999986444444777764 59999999877763 7999999999999998755 566778
Q ss_pred ccCcCeeEEEEeeCCC
Q 024868 242 LLRKPASVLSISLDGK 257 (261)
Q Consensus 242 ~~~~~v~~~~~s~dg~ 257 (261)
+|+-.|..++|||.-.
T Consensus 232 gh~~AVRkvk~Sph~~ 247 (311)
T KOG0277|consen 232 GHGLAVRKVKFSPHHA 247 (311)
T ss_pred CCceEEEEEecCcchh
Confidence 8999999999999643
No 65
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.9e-26 Score=162.85 Aligned_cols=225 Identities=16% Similarity=0.174 Sum_probs=184.3
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
..|++-+.++.+ ..++.+++.|. ..-+|-..+++. .-.+.+|++.|.+++.+-+.+.+++|+.
T Consensus 10 ERplTqiKyN~e---GDLlFscaKD~--------~~~vw~s~nGer------lGty~GHtGavW~~Did~~s~~liTGSA 72 (327)
T KOG0643|consen 10 ERPLTQIKYNRE---GDLLFSCAKDS--------TPTVWYSLNGER------LGTYDGHTGAVWCCDIDWDSKHLITGSA 72 (327)
T ss_pred ccccceEEecCC---CcEEEEecCCC--------CceEEEecCCce------eeeecCCCceEEEEEecCCcceeeeccc
Confidence 578999999986 56888888888 444444433332 4468899999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-----CCeEEEEEcc-------CceEEeecc
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----DGHLRIMHWP-------SLRIILDEP 151 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----d~~i~~~d~~-------~~~~~~~~~ 151 (261)
|.++++||++++++ ........+|..+.|+++|++++.... .+.|.++|++ ..++...+.
T Consensus 73 D~t~kLWDv~tGk~--------la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~ 144 (327)
T KOG0643|consen 73 DQTAKLWDVETGKQ--------LATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP 144 (327)
T ss_pred cceeEEEEcCCCcE--------EEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence 99999999999986 444455678999999999998887753 4579999998 344566777
Q ss_pred ccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEE-eecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEE
Q 024868 152 KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL-TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD 230 (261)
Q Consensus 152 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d 230 (261)
.+.+.+...-|.|-++.|++|..||.|.+||+++|+..... ..|.. .|+.++++||..+ .++++.|.+-++||
T Consensus 145 t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~-----FiT~s~Dttakl~D 218 (327)
T KOG0643|consen 145 TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSS-KINDLQFSRDRTY-----FITGSKDTTAKLVD 218 (327)
T ss_pred CCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhcc-ccccccccCCcce-----EEecccCccceeee
Confidence 77788999999999999999999999999999998655444 44444 6999999999998 69999999999999
Q ss_pred CCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 231 ISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 231 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
+++-+.++++. -..+|++.+++|-..+++
T Consensus 219 ~~tl~v~Kty~-te~PvN~aaisP~~d~Vi 247 (327)
T KOG0643|consen 219 VRTLEVLKTYT-TERPVNTAAISPLLDHVI 247 (327)
T ss_pred ccceeeEEEee-ecccccceecccccceEE
Confidence 99998887665 457899999999766554
No 66
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=3.4e-27 Score=194.13 Aligned_cols=242 Identities=14% Similarity=0.136 Sum_probs=187.6
Q ss_pred CCceeeEEEEEeeCCcceEEEEec--CCCCCCCCCceEEEEEcCCCCc---eec-CCeEEeeecCCCCCceEEEECCCCC
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGK--SSRASSSPSVLEIFSFDPKTTS---VYT-SPLVTYVFDESEGDPMTIAVNPSGD 76 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~i~~~~~~~~~---~~~-~~~~~~~~~~~~~~v~~~~~~~~~~ 76 (261)
+...|++++.+|+ ...+++|| .|+.. .||.-++-... ... .+.....+..|.+.|.|+.|+|||+
T Consensus 12 ~~~~IfSIdv~pd---g~~~aTgGq~~d~~~------~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~ 82 (942)
T KOG0973|consen 12 NEKSIFSIDVHPD---GVKFATGGQVLDGGI------VIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS 82 (942)
T ss_pred CCeeEEEEEecCC---ceeEecCCccccccc------eeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC
Confidence 4567999999996 56788888 55533 46655442211 111 2344567788999999999999999
Q ss_pred eEEEEecCCcEEEEEEeCC-----------ccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCce
Q 024868 77 DFVCSTTNGGCKLFEVYGG-----------ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR 145 (261)
Q Consensus 77 ~l~~~~~dg~i~i~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~ 145 (261)
+||+|++|+.|.||+.... ...............|...|.+++|+|++.++++++.|++|.+|+..+.+
T Consensus 83 ~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~ 162 (942)
T KOG0973|consen 83 YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE 162 (942)
T ss_pred eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccce
Confidence 9999999999999999831 00111111222334577899999999999999999999999999999998
Q ss_pred EEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC-----CceEEEEEecCCCcceEEEEEee
Q 024868 146 IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-----EKIELCRFSKDGTKPFLFCTVQR 220 (261)
Q Consensus 146 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~v~~~~~~p~~~~~~~~~~~~~ 220 (261)
.+..+.+|++.|..+.|.|-|++||+-++|++|+||++.+....+.+..+.. ...+.+.|||||+++.. .-+..
T Consensus 163 ~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las-~nA~n 241 (942)
T KOG0973|consen 163 LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLAS-PNAVN 241 (942)
T ss_pred eeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecc-hhhcc
Confidence 8888899999999999999999999999999999999887777777655432 24788999999998321 11223
Q ss_pred CCCcEEEEEECCCCeEEeeeeccCcCeeEEEEee
Q 024868 221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISL 254 (261)
Q Consensus 221 ~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~ 254 (261)
+.-.++.|.+..+++.-..+.+|..++..+.|+|
T Consensus 242 ~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP 275 (942)
T KOG0973|consen 242 GGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNP 275 (942)
T ss_pred CCcceeEEEecCCceeeeeeecCCCceEEEEeCh
Confidence 3445899999999987778899999999999998
No 67
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.9e-27 Score=183.86 Aligned_cols=230 Identities=11% Similarity=0.129 Sum_probs=192.3
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
.+.+|.|+.++|. ...+.++-.+| .+..||.++..+ ...+.-..-+|.+..|-+-.+++++|+
T Consensus 12 rSdRVKsVd~HPt---ePw~la~LynG--------~V~IWnyetqtm------VksfeV~~~PvRa~kfiaRknWiv~Gs 74 (794)
T KOG0276|consen 12 RSDRVKSVDFHPT---EPWILAALYNG--------DVQIWNYETQTM------VKSFEVSEVPVRAAKFIARKNWIVTGS 74 (794)
T ss_pred cCCceeeeecCCC---CceEEEeeecC--------eeEEEeccccee------eeeeeecccchhhheeeeccceEEEec
Confidence 5678999999995 55777777777 566666666554 333444466899999999899999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCce-EEeeccccCCceeEEE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMD 161 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~v~~~~ 161 (261)
+|..|++|+..+.+.. .....|...|++++.+|.-.++++++.|-.|++||.+..= +.+.+.+|...|.+++
T Consensus 75 DD~~IrVfnynt~ekV-------~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~ 147 (794)
T KOG0276|consen 75 DDMQIRVFNYNTGEKV-------KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVA 147 (794)
T ss_pred CCceEEEEecccceee-------EEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEE
Confidence 9999999999998752 2223467899999999999999999999999999998653 4455566666899999
Q ss_pred EcC-CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868 162 FSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (261)
Q Consensus 162 ~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~ 240 (261)
|+| |.+.+++++-|++|++|.+.+..+..++.+|..+ |+++.+-+.|...+ ++++++|.++++||..+..++.++
T Consensus 148 fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekG-VN~Vdyy~~gdkpy---lIsgaDD~tiKvWDyQtk~CV~TL 223 (794)
T KOG0276|consen 148 FNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKG-VNCVDYYTGGDKPY---LISGADDLTIKVWDYQTKSCVQTL 223 (794)
T ss_pred ecCCCccceeeeeccccEEEEEcCCCCCceeeeccccC-cceEEeccCCCcce---EEecCCCceEEEeecchHHHHHHh
Confidence 999 7789999999999999999999999999988775 99999999886555 699999999999999999999999
Q ss_pred eccCcCeeEEEEeeCCCEEe
Q 024868 241 RLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 241 ~~~~~~v~~~~~s~dg~~la 260 (261)
.+|...|+.+.|+|.=..++
T Consensus 224 eGHt~Nvs~v~fhp~lpiii 243 (794)
T KOG0276|consen 224 EGHTNNVSFVFFHPELPIII 243 (794)
T ss_pred hcccccceEEEecCCCcEEE
Confidence 99999999999999766554
No 68
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.1e-27 Score=177.98 Aligned_cols=225 Identities=16% Similarity=0.201 Sum_probs=173.8
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
-.+|.+++|+|... ..+.++++. .+..|+..+... ...+....+.|.++.|..||++|++|+.
T Consensus 26 ~~~vssl~fsp~~P-~d~aVt~S~----------rvqly~~~~~~~------~k~~srFk~~v~s~~fR~DG~LlaaGD~ 88 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHP-YDFAVTSSV----------RVQLYSSVTRSV------RKTFSRFKDVVYSVDFRSDGRLLAAGDE 88 (487)
T ss_pred cCcceeEecCCCCC-CceEEeccc----------EEEEEecchhhh------hhhHHhhccceeEEEeecCCeEEEccCC
Confidence 46899999998542 334444443 577777665443 2234456688999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 162 (261)
.|.|++||+.+... . .....|..++....|+| ++..+++|+.|+.+++||+.+......+.+|...|++.+|
T Consensus 89 sG~V~vfD~k~r~i-L------R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~ 161 (487)
T KOG0310|consen 89 SGHVKVFDMKSRVI-L------RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDI 161 (487)
T ss_pred cCcEEEeccccHHH-H------HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeecc
Confidence 99999999655222 1 12234568899999999 5567788889999999999988876677888899999999
Q ss_pred cCC-CCEEEEecCCCcEEEEEccCC-cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe-EEee
Q 024868 163 SLD-SEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGH 239 (261)
Q Consensus 163 s~~-~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~ 239 (261)
+|. +.++++|+.||.|++||++.. ..+.++. ++.+|.++.+-|.|.. +++++. +.+++||+-+|. .+..
T Consensus 162 ~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln--hg~pVe~vl~lpsgs~-----iasAgG-n~vkVWDl~~G~qll~~ 233 (487)
T KOG0310|consen 162 SPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN--HGCPVESVLALPSGSL-----IASAGG-NSVKVWDLTTGGQLLTS 233 (487)
T ss_pred ccCCCeEEEecCCCceEEEEEeccCCceeEEec--CCCceeeEEEcCCCCE-----EEEcCC-CeEEEEEecCCceehhh
Confidence 994 568899999999999999976 5555554 5668999999999997 455554 479999998655 4444
Q ss_pred eeccCcCeeEEEEeeCCCEEe
Q 024868 240 KRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 240 ~~~~~~~v~~~~~s~dg~~la 260 (261)
+..|...|+|+.+..+++.|+
T Consensus 234 ~~~H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 234 MFNHNKTVTCLRLASDSTRLL 254 (487)
T ss_pred hhcccceEEEEEeecCCceEe
Confidence 455889999999999988775
No 69
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=9.2e-26 Score=156.25 Aligned_cols=242 Identities=15% Similarity=0.207 Sum_probs=185.6
Q ss_pred CCCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcC----CC-CceecCC--eEEeeecCCCCCceEEEECCC
Q 024868 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDP----KT-TSVYTSP--LVTYVFDESEGDPMTIAVNPS 74 (261)
Q Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~----~~-~~~~~~~--~~~~~~~~~~~~v~~~~~~~~ 74 (261)
+.+..|..++|+|. ..+.++|+.... ++|..|-. .. .+....| ......+.|.+.|+|.+|+|+
T Consensus 30 ~dsqairav~fhp~---g~lyavgsnskt------~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPA---GGLYAVGSNSKT------FRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred cchhheeeEEecCC---CceEEeccCCce------EEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 55678999999995 568888876652 25555532 11 1111122 223445678999999999999
Q ss_pred CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC----CcEEEEec-cCCeEEEEEccCceEEee
Q 024868 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD----GSRFAAGG-VDGHLRIMHWPSLRIILD 149 (261)
Q Consensus 75 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~-~d~~i~~~d~~~~~~~~~ 149 (261)
|+.+++|+.|.+|++..++...+ ..........-|.+.|..++|-.+ +..|++++ .|-.|++-|..+++....
T Consensus 101 geliatgsndk~ik~l~fn~dt~--~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a 178 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTC--NATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA 178 (350)
T ss_pred cCeEEecCCCceEEEEecccccc--cccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence 99999999999999987765442 112223334456789999999653 45677765 566788888888988888
Q ss_pred ccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecC------CCceEEEEEecCCCcceEEEEEeeCCC
Q 024868 150 EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS------DEKIELCRFSKDGTKPFLFCTVQRGDK 223 (261)
Q Consensus 150 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~p~~~~~~~~~~~~~~~d 223 (261)
+.+|.+.|.++ ++-+|-++++|+.|.+|++||++-..++.++.... ...|.+++..|.|+. ++++..|
T Consensus 179 ~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl-----l~sg~~d 252 (350)
T KOG0641|consen 179 LSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL-----LASGHAD 252 (350)
T ss_pred ecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce-----eeeccCC
Confidence 88888888776 34468899999999999999999888887764321 235899999999998 7999999
Q ss_pred cEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 224 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
....+||++.++.++.+..|...|.++.|||..-||.
T Consensus 253 ssc~lydirg~r~iq~f~phsadir~vrfsp~a~yll 289 (350)
T KOG0641|consen 253 SSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLL 289 (350)
T ss_pred CceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEE
Confidence 9999999999999999999999999999999888875
No 70
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.5e-27 Score=189.98 Aligned_cols=225 Identities=15% Similarity=0.157 Sum_probs=174.8
Q ss_pred eEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC-CCCeEEEEecCCc
Q 024868 8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTTNGG 86 (261)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~ 86 (261)
..++|..- ..++||++...| .|-.||.....- ......+..|+..++++.|++ ...+|++|+.||.
T Consensus 91 ~DVkW~~~--~~NlIAT~s~nG--------~i~vWdlnk~~r---nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~ 157 (839)
T KOG0269|consen 91 ADVKWGQL--YSNLIATCSTNG--------VISVWDLNKSIR---NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGT 157 (839)
T ss_pred hhcccccc--hhhhheeecCCC--------cEEEEecCcccc---chhhhHhhhhccceeeeeeccCCccEEEecCCCce
Confidence 34567632 478999999888 777777765210 011347889999999999998 5678899999999
Q ss_pred EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceE-EeeccccCCceeEEEEcC
Q 024868 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRI-ILDEPKAHKSVLDMDFSL 164 (261)
Q Consensus 87 i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~s~ 164 (261)
|+.||++..... .......+.|++++|+| .+.+|+++...|.+.+||++.... ..++..|.++|.++.|+|
T Consensus 158 vK~~DlR~~~S~-------~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP 230 (839)
T KOG0269|consen 158 VKCWDLRSKKSK-------STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP 230 (839)
T ss_pred EEEEeeeccccc-------ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC
Confidence 999999887641 22223457899999999 678899999999999999987654 345667888999999999
Q ss_pred CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe-EEeeeecc
Q 024868 165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLL 243 (261)
Q Consensus 165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~ 243 (261)
++.+||+|+.|+.|+|||+.+.+.......+...++.++.|-|+.++.+. ..+-..|-.|+|||++..- +...+..|
T Consensus 231 nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLA--tcsmv~dtsV~VWDvrRPYIP~~t~~eH 308 (839)
T KOG0269|consen 231 NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLA--TCSMVVDTSVHVWDVRRPYIPYATFLEH 308 (839)
T ss_pred CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhh--hhhccccceEEEEeeccccccceeeecc
Confidence 99999999999999999998776655555556778999999999987532 2233467789999998654 33456678
Q ss_pred CcCeeEEEEee
Q 024868 244 RKPASVLSISL 254 (261)
Q Consensus 244 ~~~v~~~~~s~ 254 (261)
...++.++|..
T Consensus 309 ~~~vt~i~W~~ 319 (839)
T KOG0269|consen 309 TDSVTGIAWDS 319 (839)
T ss_pred CccccceeccC
Confidence 78888888865
No 71
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.3e-27 Score=162.94 Aligned_cols=187 Identities=18% Similarity=0.232 Sum_probs=161.8
Q ss_pred EeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCC-CCCCCeEEEEEeeCCcEEEEeccCC
Q 024868 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL-QDAGPQKCLSFSVDGSRFAAGGVDG 134 (261)
Q Consensus 56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~ 134 (261)
...+..+.++|..+.|+-+|++.++++.|.++++|+...+.. +... .|...|..++.+.|+..|++++.|.
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~l--------iktYsghG~EVlD~~~s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGAL--------IKTYSGHGHEVLDAALSSDNSKFASCGGDK 81 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccce--------eeeecCCCceeeeccccccccccccCCCCc
Confidence 456788999999999999999999999999999999987765 3333 3456899999999999999999999
Q ss_pred eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccC--CcEEEEEeecCCCceEEEEEecCCCcc
Q 024868 135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED--GVAWTFLTRNSDEKIELCRFSKDGTKP 212 (261)
Q Consensus 135 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~~ 212 (261)
.+.+||+.+++..+++.+|...|..++|+.+...+++|+.|.++++||.++ .++++.+....+ .|.++..+. ..
T Consensus 82 ~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D-~V~Si~v~~--he- 157 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD-GVSSIDVAE--HE- 157 (307)
T ss_pred eEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC-ceeEEEecc--cE-
Confidence 999999999999999999999999999999999999999999999999985 567777776655 488887653 33
Q ss_pred eEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 213 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
+++|+.||+++.||++.|+.. ....+.+|+++.|++||+.+.
T Consensus 158 ----IvaGS~DGtvRtydiR~G~l~--sDy~g~pit~vs~s~d~nc~L 199 (307)
T KOG0316|consen 158 ----IVAGSVDGTVRTYDIRKGTLS--SDYFGHPITSVSFSKDGNCSL 199 (307)
T ss_pred ----EEeeccCCcEEEEEeecceee--hhhcCCcceeEEecCCCCEEE
Confidence 689999999999999999865 344567999999999998654
No 72
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=4.8e-28 Score=177.05 Aligned_cols=213 Identities=12% Similarity=0.200 Sum_probs=160.7
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
.|.|.|+.|... ++++|++|. .+.+||.++++. ...+-+|...|..+.|+ ..++++++.
T Consensus 237 tGSVLCLqyd~r-----viisGSSDs--------TvrvWDv~tge~------l~tlihHceaVLhlrf~--ng~mvtcSk 295 (499)
T KOG0281|consen 237 TGSVLCLQYDER-----VIVSGSSDS--------TVRVWDVNTGEP------LNTLIHHCEAVLHLRFS--NGYMVTCSK 295 (499)
T ss_pred CCcEEeeeccce-----EEEecCCCc--------eEEEEeccCCch------hhHHhhhcceeEEEEEe--CCEEEEecC
Confidence 567777777553 777777777 677777766664 34566677777777775 346777777
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
|.++.+||+...... . .......|...|+.+.|+ .++|++++.|++|++|++.+++.+..+.+|...|-|+.+
T Consensus 296 DrsiaVWdm~sps~i-t---~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY- 368 (499)
T KOG0281|consen 296 DRSIAVWDMASPTDI-T---LRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY- 368 (499)
T ss_pred CceeEEEeccCchHH-H---HHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc-
Confidence 777888877655420 0 011223456788888886 569999999999999999999999888888888888876
Q ss_pred CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEE------
Q 024868 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI------ 237 (261)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~------ 237 (261)
.|+++++|+.|.+|++||+..|.+++.+++|.+ -|+++.|. .+. +++|+.||+|++||+..+...
T Consensus 369 -r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe-LvRciRFd--~kr-----IVSGaYDGkikvWdl~aaldpra~~~~ 439 (499)
T KOG0281|consen 369 -RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-LVRCIRFD--NKR-----IVSGAYDGKIKVWDLQAALDPRAPAST 439 (499)
T ss_pred -cCeEEEecCCCceEEEEeccccHHHHHHhchHH-hhhheeec--Cce-----eeeccccceEEEEecccccCCcccccc
Confidence 599999999999999999999999999999877 49999995 455 699999999999999765422
Q ss_pred ---eeeeccCcCeeEEEEe
Q 024868 238 ---GHKRLLRKPASVLSIS 253 (261)
Q Consensus 238 ---~~~~~~~~~v~~~~~s 253 (261)
.+...|.+.|..+.|.
T Consensus 440 ~Cl~~lv~hsgRVFrLQFD 458 (499)
T KOG0281|consen 440 LCLRTLVEHSGRVFRLQFD 458 (499)
T ss_pred hHHHhhhhccceeEEEeec
Confidence 2333455566666653
No 73
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=3.7e-28 Score=177.65 Aligned_cols=212 Identities=13% Similarity=0.175 Sum_probs=177.1
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
.+-.|||+.+... .+++|..|+ .|..||.++..+ ...+.+|++.|.|+.| +.+.+++|+
T Consensus 196 ~skgVYClQYDD~-----kiVSGlrDn--------TikiWD~n~~~c------~~~L~GHtGSVLCLqy--d~rviisGS 254 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE-----KIVSGLRDN--------TIKIWDKNSLEC------LKILTGHTGSVLCLQY--DERVIVSGS 254 (499)
T ss_pred cCCceEEEEecch-----hhhcccccC--------ceEEeccccHHH------HHhhhcCCCcEEeeec--cceEEEecC
Confidence 4567999988643 789999998 888899887765 5678999999999999 456899999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE---eeccccCCceeE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII---LDEPKAHKSVLD 159 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~---~~~~~~~~~v~~ 159 (261)
.|.+|++||.+++++. ...+.|-+.|..+.|+ ..++++++.|.++.+||+.....+ ..+.+|...|..
T Consensus 255 SDsTvrvWDv~tge~l-------~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNv 325 (499)
T KOG0281|consen 255 SDSTVRVWDVNTGEPL-------NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 325 (499)
T ss_pred CCceEEEEeccCCchh-------hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheee
Confidence 9999999999999862 2234556889999997 458999999999999999765432 233466678999
Q ss_pred EEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868 160 MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (261)
Q Consensus 160 ~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~ 239 (261)
+.|+ .+++++++.|.+|++|++.+++.++++.+|..+ |.++.+ .|+. +++|+.|.+|++||++.|.++..
T Consensus 326 Vdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRG-IAClQY--r~rl-----vVSGSSDntIRlwdi~~G~cLRv 395 (499)
T KOG0281|consen 326 VDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRG-IACLQY--RDRL-----VVSGSSDNTIRLWDIECGACLRV 395 (499)
T ss_pred eccc--cceEEEecCCceEEEEeccceeeehhhhccccc-ceehhc--cCeE-----EEecCCCceEEEEeccccHHHHH
Confidence 9986 669999999999999999999999999988774 877765 5676 79999999999999999999988
Q ss_pred eeccCcCeeEEEEee
Q 024868 240 KRLLRKPASVLSISL 254 (261)
Q Consensus 240 ~~~~~~~v~~~~~s~ 254 (261)
+.+|+.-|.++.|..
T Consensus 396 LeGHEeLvRciRFd~ 410 (499)
T KOG0281|consen 396 LEGHEELVRCIRFDN 410 (499)
T ss_pred HhchHHhhhheeecC
Confidence 999998898888854
No 74
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=5.8e-26 Score=163.27 Aligned_cols=225 Identities=13% Similarity=0.172 Sum_probs=182.0
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
.+.|+.+++|.+ ...+++|+.++ .|..+|..++. ...+..|...+.++.+++....+++|+
T Consensus 53 ~~~plL~c~F~d----~~~~~~G~~dg--------~vr~~Dln~~~-------~~~igth~~~i~ci~~~~~~~~vIsgs 113 (323)
T KOG1036|consen 53 HGAPLLDCAFAD----ESTIVTGGLDG--------QVRRYDLNTGN-------EDQIGTHDEGIRCIEYSYEVGCVISGS 113 (323)
T ss_pred cCCceeeeeccC----CceEEEeccCc--------eEEEEEecCCc-------ceeeccCCCceEEEEeeccCCeEEEcc
Confidence 478999999988 45789999999 99999998877 556788999999999999888899999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecccc--CCceeEE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA--HKSVLDM 160 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~v~~~ 160 (261)
.|++|++||.+.... ...+...+.|.++..+ +..|++|+.+..+.+||+++.......... +-.++++
T Consensus 114 WD~~ik~wD~R~~~~--------~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v 183 (323)
T KOG1036|consen 114 WDKTIKFWDPRNKVV--------VGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCV 183 (323)
T ss_pred cCccEEEEecccccc--------ccccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEE
Confidence 999999999986432 2333334578877665 778999999999999999987764422222 2268999
Q ss_pred EEcCCCCEEEEecCCCcEEEEEccCC----cEEEEEeecC--------CCceEEEEEecCCCcceEEEEEeeCCCcEEEE
Q 024868 161 DFSLDSEFLATTSTDGSARIWKTEDG----VAWTFLTRNS--------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAV 228 (261)
Q Consensus 161 ~~s~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~--------~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~ 228 (261)
++-|++.-++.++-||.|.+=.++.. +....++.|. ..||++++|+|-... +++|+.||.|.+
T Consensus 184 ~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t-----faTgGsDG~V~~ 258 (323)
T KOG1036|consen 184 ALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT-----FATGGSDGIVNI 258 (323)
T ss_pred EEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce-----EEecCCCceEEE
Confidence 99998888999999999988766654 2333444432 237999999998776 699999999999
Q ss_pred EECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 229 YDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 229 ~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
||+.+.+.+..+...+..|.+++|+.||..||+
T Consensus 259 Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAi 291 (323)
T KOG1036|consen 259 WDLFNRKRLKQLAKYETSISSLSFSMDGSLLAI 291 (323)
T ss_pred ccCcchhhhhhccCCCCceEEEEeccCCCeEEE
Confidence 999999988888877788999999999999985
No 75
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=5.4e-27 Score=179.27 Aligned_cols=242 Identities=18% Similarity=0.203 Sum_probs=172.9
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
+.-.|..+++.|. +..+++|+-|- .+..||..+....... .....+.....|.++.|++.|..|++.+
T Consensus 166 gtk~Vsal~~Dp~---GaR~~sGs~Dy--------~v~~wDf~gMdas~~~-fr~l~P~E~h~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 166 GTKIVSALAVDPS---GARFVSGSLDY--------TVKFWDFQGMDASMRS-FRQLQPCETHQINSLQYSVTGDQILVVS 233 (641)
T ss_pred CceEEEEeeecCC---Cceeeeccccc--------eEEEEecccccccchh-hhccCcccccccceeeecCCCCeEEEEe
Confidence 3456888888885 56788998887 6667776554332222 2334445566899999999999998888
Q ss_pred cCCcEEEEEEeCCccccc-----eeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCCeEEEEEccCceEEeeccccC--
Q 024868 83 TNGGCKLFEVYGGATDIN-----LLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDEPKAH-- 154 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-- 154 (261)
.....+++|-.......- .+.....+-.|...+++.+|+|+. ..+++++.||++++||+.+.+.......+.
T Consensus 234 g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence 888899999876543111 111112333456788999999965 578899999999999998655433332221
Q ss_pred ----CceeEEEEcCCCCEEEEecCCCcEEEEEccCCc--EEEEEe-ecCC-CceEEEEEecCCCcceEEEEEeeCCCcEE
Q 024868 155 ----KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV--AWTFLT-RNSD-EKIELCRFSKDGTKPFLFCTVQRGDKALL 226 (261)
Q Consensus 155 ----~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~-~~~~-~~v~~~~~~p~~~~~~~~~~~~~~~d~~i 226 (261)
-++..++|+|||++||+|+.||+|++|+..... +...+. .|.. ..|+++.||+||++ +++.+.|+++
T Consensus 314 ~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~-----LlSRg~D~tL 388 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNY-----LLSRGFDDTL 388 (641)
T ss_pred CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccch-----hhhccCCCce
Confidence 268999999999999999999999999975432 222222 3332 25999999999999 7999999999
Q ss_pred EEEECCCCeE-EeeeeccC--cCeeEEEEeeCCCEEeC
Q 024868 227 AVYDISTWNK-IGHKRLLR--KPASVLSISLDGKYLAM 261 (261)
Q Consensus 227 ~~~d~~~~~~-~~~~~~~~--~~v~~~~~s~dg~~la~ 261 (261)
++||++..+. +....+.. .+-+.++||||.+.|++
T Consensus 389 KvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~T 426 (641)
T KOG0772|consen 389 KVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILT 426 (641)
T ss_pred eeeeccccccchhhhcCCCccCCCCccccCCCceEEEe
Confidence 9999997653 43333332 45678999999998864
No 76
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.8e-26 Score=178.64 Aligned_cols=220 Identities=15% Similarity=0.191 Sum_probs=176.9
Q ss_pred EEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEE
Q 024868 10 GSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKL 89 (261)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 89 (261)
++|+. .+++++|-+. .+|.|+..++.+ ......+.+.|+++.|+++|..|++|..+|.|.|
T Consensus 183 ldWss----~n~laValg~---------~vylW~~~s~~v------~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~i 243 (484)
T KOG0305|consen 183 LDWSS----ANVLAVALGQ---------SVYLWSASSGSV------TELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQI 243 (484)
T ss_pred hhccc----CCeEEEEecc---------eEEEEecCCCce------EEeEecCCCceEEEEECCCCCEEEEeecCCeEEE
Confidence 35654 4567766442 589999888774 3333334789999999999999999999999999
Q ss_pred EEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee-ccccCCceeEEEEcCCCCE
Q 024868 90 FEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMDFSLDSEF 168 (261)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~ 168 (261)
||....+..... ...|...|.+++|+ +..+.+|+.++.|..+|++..+.... +..|...|..+.|++|+++
T Consensus 244 wD~~~~k~~~~~------~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~ 315 (484)
T KOG0305|consen 244 WDVKEQKKTRTL------RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ 315 (484)
T ss_pred Eehhhccccccc------cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe
Confidence 999877652211 11257899999998 67889999999999999998877665 5556678999999999999
Q ss_pred EEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCee
Q 024868 169 LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPAS 248 (261)
Q Consensus 169 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~ 248 (261)
+|+|+.|+.+.|||....++...+..|.. .|..++|+|-..-++ +...|+.|++|++||..+++.+.... -...|+
T Consensus 316 lASGgnDN~~~Iwd~~~~~p~~~~~~H~a-AVKA~awcP~q~~lL--AsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVc 391 (484)
T KOG0305|consen 316 LASGGNDNVVFIWDGLSPEPKFTFTEHTA-AVKALAWCPWQSGLL--ATGGGSADRCIKFWNTNTGARIDSVD-TGSQVC 391 (484)
T ss_pred eccCCCccceEeccCCCccccEEEeccce-eeeEeeeCCCccCce--EEcCCCcccEEEEEEcCCCcEecccc-cCCcee
Confidence 99999999999999988888888888876 599999999877632 13445679999999999999886443 557899
Q ss_pred EEEEeeCCCEEe
Q 024868 249 VLSISLDGKYLA 260 (261)
Q Consensus 249 ~~~~s~dg~~la 260 (261)
++.|++..+-|+
T Consensus 392 sL~Wsk~~kEi~ 403 (484)
T KOG0305|consen 392 SLIWSKKYKELL 403 (484)
T ss_pred eEEEcCCCCEEE
Confidence 999999987665
No 77
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=4.8e-27 Score=164.57 Aligned_cols=203 Identities=14% Similarity=0.173 Sum_probs=167.7
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
.+.-|..++|+.+ .+.+++|+.+. .+.+||.+..+- ....+.+|++.|..+-|....+.+++++
T Consensus 99 hkhivk~~af~~d---s~~lltgg~ek--------llrvfdln~p~A-----pp~E~~ghtg~Ir~v~wc~eD~~iLSSa 162 (334)
T KOG0278|consen 99 HKHIVKAVAFSQD---SNYLLTGGQEK--------LLRVFDLNRPKA-----PPKEISGHTGGIRTVLWCHEDKCILSSA 162 (334)
T ss_pred hhheeeeEEeccc---chhhhccchHH--------HhhhhhccCCCC-----CchhhcCCCCcceeEEEeccCceEEeec
Confidence 4566889999986 56888898877 667777765442 2446889999999999999888899889
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 162 (261)
.|++|++||..++.. .+.+.-..+|+++.++++|++|.++ ..+.|.+||..+.+.+... .....|.+.++
T Consensus 163 dd~tVRLWD~rTgt~--------v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~-k~P~nV~SASL 232 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTE--------VQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSY-KMPCNVESASL 232 (334)
T ss_pred cCCceEEEEeccCcE--------EEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeec-cCccccccccc
Confidence 999999999999875 3344446789999999999988777 6678999999888776543 34557899999
Q ss_pred cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (261)
Q Consensus 163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~ 236 (261)
+|+...+++|+.|..++.||..+|+.+..+...+.++|.++.|+|+|.. .++|++||+|++|.+..++.
T Consensus 233 ~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~-----yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 233 HPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGEL-----YASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred cCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCce-----eeccCCCceEEEEEecCCCc
Confidence 9999999999999999999999999988863334448999999999997 59999999999999876654
No 78
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=5.8e-26 Score=186.99 Aligned_cols=241 Identities=18% Similarity=0.167 Sum_probs=183.4
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCC--CCcee--------cCCeEEeeecCCCCCceEEEEC
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPK--TTSVY--------TSPLVTYVFDESEGDPMTIAVN 72 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~~--------~~~~~~~~~~~~~~~v~~~~~~ 72 (261)
..++|.|+.|+|+ ..++|+|+.|+.+ .||.++.. ...+. ..-.....+.+|...|..++|+
T Consensus 68 h~~sv~CVR~S~d---G~~lAsGSDD~~v------~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 68 HDGSVNCVRFSPD---GSYLASGSDDRLV------MIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred ccCceeEEEECCC---CCeEeeccCcceE------EEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence 3589999999996 6799999999822 45555520 11110 0112456788999999999999
Q ss_pred CCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccc
Q 024868 73 PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK 152 (261)
Q Consensus 73 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 152 (261)
|++.+|++++.|++|.+|+..+... . .....|.+.|..+.|.|-|++||+-+.|++|++|.+.+-.....+.+
T Consensus 139 p~~~~lvS~s~DnsViiwn~~tF~~-~------~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~ 211 (942)
T KOG0973|consen 139 PDDSLLVSVSLDNSVIIWNAKTFEL-L------KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITK 211 (942)
T ss_pred CCccEEEEecccceEEEEcccccee-e------eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeecc
Confidence 9999999999999999999998853 1 22234578899999999999999999999999999776544444433
Q ss_pred cC------CceeEEEEcCCCCEEEEecC----CCcEEEEEccCCcEEEEEeecCCCceEEEEEecC--------CC---c
Q 024868 153 AH------KSVLDMDFSLDSEFLATTST----DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD--------GT---K 211 (261)
Q Consensus 153 ~~------~~v~~~~~s~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~--------~~---~ 211 (261)
+. ..+..+.|||||++|++... -..+.|.+-.+.+.-..+-+|.. ++.+++|+|. |. .
T Consensus 212 pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~ 290 (942)
T KOG0973|consen 212 PFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQP 290 (942)
T ss_pred chhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCC
Confidence 22 24789999999999998643 24688998888887788888877 7999999982 11 1
Q ss_pred -ceEEEEEeeCCCcEEEEEECCCCeEEeeee-ccCcCeeEEEEeeCCCEEe
Q 024868 212 -PFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 212 -~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~s~dg~~la 260 (261)
.+..++++|+.|++|.||.....+++.... .....|.+++|+|||..|.
T Consensus 291 ~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~Lf 341 (942)
T KOG0973|consen 291 NCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLF 341 (942)
T ss_pred CcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEE
Confidence 122347899999999999998877764332 3457899999999998664
No 79
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.3e-27 Score=173.82 Aligned_cols=209 Identities=14% Similarity=0.196 Sum_probs=165.2
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeec-CCCCCceEEEECCCCCeEEEE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD-ESEGDPMTIAVNPSGDDFVCS 81 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~ 81 (261)
...||.-+.|+|+ .+++++++.+. .++.||..++.+ ...++ +|...+.+.+|.|||..+++|
T Consensus 268 h~~~V~yi~wSPD---dryLlaCg~~e--------~~~lwDv~tgd~------~~~y~~~~~~S~~sc~W~pDg~~~V~G 330 (519)
T KOG0293|consen 268 HSQPVSYIMWSPD---DRYLLACGFDE--------VLSLWDVDTGDL------RHLYPSGLGFSVSSCAWCPDGFRFVTG 330 (519)
T ss_pred ccCceEEEEECCC---CCeEEecCchH--------heeeccCCcchh------hhhcccCcCCCcceeEEccCCceeEec
Confidence 3679999999997 56677776777 688999988875 22222 245789999999999999999
Q ss_pred ecCCcEEEEEEeCCccc-------cc-----------------------eee----eeCCCCCCCCCeEEEEEeeCCcEE
Q 024868 82 TTNGGCKLFEVYGGATD-------IN-----------------------LLA----KKMPPLQDAGPQKCLSFSVDGSRF 127 (261)
Q Consensus 82 ~~dg~i~i~~~~~~~~~-------~~-----------------------~~~----~~~~~~~~~~~v~~~~~s~~~~~l 127 (261)
+.|+++..||++..... .+ ... ..........+|+++..|.|++++
T Consensus 331 s~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~ 410 (519)
T KOG0293|consen 331 SPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLA 410 (519)
T ss_pred CCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEE
Confidence 99999999999765320 00 000 001122335688999999999999
Q ss_pred EEeccCCeEEEEEccCceEEeeccccCCc--eeEEEEcC-CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEE
Q 024868 128 AAGGVDGHLRIMHWPSLRIILDEPKAHKS--VLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCR 204 (261)
Q Consensus 128 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 204 (261)
++--.+..+++||++....+.++.+|... +..-+|-- +..++++|+.|+.|+||+..+|+++.++.+|.. .|++++
T Consensus 411 LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~-~vNcVs 489 (519)
T KOG0293|consen 411 LVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK-TVNCVS 489 (519)
T ss_pred EEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc-eeeEEe
Confidence 99889999999999988887788877753 55555654 558999999999999999999999999999887 599999
Q ss_pred EecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868 205 FSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (261)
Q Consensus 205 ~~p~~~~~~~~~~~~~~~d~~i~~~d~~~ 233 (261)
|+|..... ++++++||+|+||-...
T Consensus 490 wNP~~p~m----~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 490 WNPADPEM----FASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCCHHH----hhccCCCCeEEEecCCc
Confidence 99998874 59999999999998764
No 80
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.8e-26 Score=180.76 Aligned_cols=227 Identities=12% Similarity=0.159 Sum_probs=183.8
Q ss_pred eCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeC
Q 024868 15 RPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYG 94 (261)
Q Consensus 15 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~ 94 (261)
+....+++.+||.|| .|..|+.....-..+......++.|.+.|..++...+++.|++++.|-+|++|+...
T Consensus 33 da~~~ryLfTgGRDg--------~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~ 104 (735)
T KOG0308|consen 33 DAPNGRYLFTGGRDG--------IIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHK 104 (735)
T ss_pred cCCCCceEEecCCCc--------eEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeeccc
Confidence 334566899999999 666665533221111112456889999999999999999999999999999999976
Q ss_pred CccccceeeeeCCCCCCCCCeEEEEE-eeCCcEEEEeccCCeEEEEEccCceE--E--------eecc-ccCCceeEEEE
Q 024868 95 GATDINLLAKKMPPLQDAGPQKCLSF-SVDGSRFAAGGVDGHLRIMHWPSLRI--I--------LDEP-KAHKSVLDMDF 162 (261)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~d~~i~~~d~~~~~~--~--------~~~~-~~~~~v~~~~~ 162 (261)
..... ....-.|...|.+++. .++..++|+|+-|+.|.+||++++.. + .... ++...|++++.
T Consensus 105 ~~~~c-----~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~ 179 (735)
T KOG0308|consen 105 DNTFC-----MSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAM 179 (735)
T ss_pred Ccchh-----HhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeec
Confidence 63100 0122346789999999 78889999999999999999987632 1 1222 45568999999
Q ss_pred cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (261)
Q Consensus 163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~ 242 (261)
++.|..+++|+..+.+++||.++++.+..+.+|.+ .|+.+..++||+. +++++.||+|++||+...+++.++..
T Consensus 180 N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~-----~ls~sSDgtIrlWdLgqQrCl~T~~v 253 (735)
T KOG0308|consen 180 NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTR-----LLSASSDGTIRLWDLGQQRCLATYIV 253 (735)
T ss_pred CCcceEEEecCcccceEEeccccccceeeeecccc-ceEEEEEcCCCCe-----EeecCCCceEEeeeccccceeeeEEe
Confidence 99999999999999999999999999999998877 5999999999999 79999999999999999999999999
Q ss_pred cCcCeeEEEEeeCCCEEe
Q 024868 243 LRKPASVLSISLDGKYLA 260 (261)
Q Consensus 243 ~~~~v~~~~~s~dg~~la 260 (261)
|...|+++..+|+=+++.
T Consensus 254 H~e~VWaL~~~~sf~~vY 271 (735)
T KOG0308|consen 254 HKEGVWALQSSPSFTHVY 271 (735)
T ss_pred ccCceEEEeeCCCcceEE
Confidence 999999999988766553
No 81
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=4.1e-28 Score=176.09 Aligned_cols=187 Identities=18% Similarity=0.244 Sum_probs=157.9
Q ss_pred CCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeee-eCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEE
Q 024868 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAK-KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH 140 (261)
Q Consensus 62 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 140 (261)
....+.|..|+|||++|++|+.||.|-+|+..+++....+... ....+-+..+|.|+.||.|...+++|+.||.|++|.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 3456889999999999999999999999999988754332211 122334568999999999999999999999999999
Q ss_pred ccCceEEeecc-ccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEe
Q 024868 141 WPSLRIILDEP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (261)
Q Consensus 141 ~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 219 (261)
+++|.+++++. .|...|+++.||.|+..+++++.|.+++|.-+++|++++.+.+|.. .|+.+.|.+||.+ +++
T Consensus 292 i~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS-yvn~a~ft~dG~~-----iis 365 (508)
T KOG0275|consen 292 IETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS-YVNEATFTDDGHH-----IIS 365 (508)
T ss_pred EecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc-cccceEEcCCCCe-----EEE
Confidence 99999988877 4556899999999999999999999999999999999999999877 4999999999999 799
Q ss_pred eCCCcEEEEEECCCCeEEeeeeccC--cCeeEEEEee
Q 024868 220 RGDKALLAVYDISTWNKIGHKRLLR--KPASVLSISL 254 (261)
Q Consensus 220 ~~~d~~i~~~d~~~~~~~~~~~~~~--~~v~~~~~s~ 254 (261)
++.||+|++|+.++.+++.++...+ .+|.++..-|
T Consensus 366 aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~P 402 (508)
T KOG0275|consen 366 ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLP 402 (508)
T ss_pred ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcC
Confidence 9999999999999998877665443 3455554444
No 82
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=1.2e-25 Score=164.97 Aligned_cols=189 Identities=16% Similarity=0.251 Sum_probs=160.1
Q ss_pred EeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCe
Q 024868 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH 135 (261)
Q Consensus 56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 135 (261)
...+..|++.|.+++.+|+.+++++|+.|...++|++.++... .....|+..|.++.||.||.+||+|+.+|.
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~-------~eltgHKDSVt~~~FshdgtlLATGdmsG~ 129 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA-------GELTGHKDSVTCCSFSHDGTLLATGDMSGK 129 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce-------eEecCCCCceEEEEEccCceEEEecCCCcc
Confidence 4568899999999999999999999999999999999988741 233456789999999999999999999999
Q ss_pred EEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEE
Q 024868 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (261)
Q Consensus 136 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~ 215 (261)
|++|+..++.....+...-..+.-+.|+|-+..|++|+.||.+.+|.+.++...+.+.+|.. ++++-.|.|+|+.
T Consensus 130 v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr---- 204 (399)
T KOG0296|consen 130 VLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKR---- 204 (399)
T ss_pred EEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCC-CcccccccCCCce----
Confidence 99999999988777765556788899999999999999999999999999877888887654 7999999999999
Q ss_pred EEEeeCCCcEEEEEECCCCeEEeeeecc-CcCeeEEEEeeCCC
Q 024868 216 CTVQRGDKALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGK 257 (261)
Q Consensus 216 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~s~dg~ 257 (261)
++++..||+|++||..+++++..+... .....++.++.++.
T Consensus 205 -~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~ 246 (399)
T KOG0296|consen 205 -ILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGS 246 (399)
T ss_pred -EEEEecCceEEEEecCCCceeEEecccccCcCCccccccccc
Confidence 789999999999999999988666522 23344455544443
No 83
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=2.2e-26 Score=176.02 Aligned_cols=236 Identities=15% Similarity=0.188 Sum_probs=171.7
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecC------CeEEeeecCCCCCceEEEECCCC-C
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTS------PLVTYVFDESEGDPMTIAVNPSG-D 76 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~-~ 76 (261)
..+|.+++|++..+ .-++++|.. +...+|.++..+..- .......++|...+++.+|+|+. +
T Consensus 214 ~h~i~sl~ys~Tg~-~iLvvsg~a----------qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~ 282 (641)
T KOG0772|consen 214 THQINSLQYSVTGD-QILVVSGSA----------QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE 282 (641)
T ss_pred ccccceeeecCCCC-eEEEEecCc----------ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc
Confidence 46789999999642 333344444 556666665443211 12234678899999999999954 5
Q ss_pred eEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE--E-eecccc
Q 024868 77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI--I-LDEPKA 153 (261)
Q Consensus 77 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~--~-~~~~~~ 153 (261)
.+++++.||++++|++...+...+.+... ..-...-++..++|+|||++||+|..||.|.+|+...... . .....|
T Consensus 283 ~FlT~s~DgtlRiWdv~~~k~q~qVik~k-~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH 361 (641)
T KOG0772|consen 283 EFLTCSYDGTLRIWDVNNTKSQLQVIKTK-PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAH 361 (641)
T ss_pred ceEEecCCCcEEEEecCCchhheeEEeec-cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeecc
Confidence 68899999999999998776544333221 1122346789999999999999999999999999754321 1 122334
Q ss_pred CC--ceeEEEEcCCCCEEEEecCCCcEEEEEccCCc-EEEEEeec-CCCceEEEEEecCCCcceEEEEEee------CCC
Q 024868 154 HK--SVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-AWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQR------GDK 223 (261)
Q Consensus 154 ~~--~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~-~~~~v~~~~~~p~~~~~~~~~~~~~------~~d 223 (261)
.. .|+++.||+||++|++-+.|+++++||+++.+ ++.+..+- ...+-+.++|||+.+. +++| ...
T Consensus 362 ~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kl-----i~TGtS~~~~~~~ 436 (641)
T KOG0772|consen 362 LPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKL-----ILTGTSAPNGMTA 436 (641)
T ss_pred CCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceE-----EEecccccCCCCC
Confidence 44 79999999999999999999999999999754 44444321 2234678999999997 3443 345
Q ss_pred cEEEEEECCCCeEEeeeeccCcCeeEEEEeeCC
Q 024868 224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDG 256 (261)
Q Consensus 224 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg 256 (261)
|++.+||..+.+.+..+......|..+.|+|-=
T Consensus 437 g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkL 469 (641)
T KOG0772|consen 437 GTLFFFDRMTLDTVYKIDISTASVVRCLWHPKL 469 (641)
T ss_pred ceEEEEeccceeeEEEecCCCceEEEEeecchh
Confidence 789999999999888888888899999999953
No 84
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.7e-26 Score=183.59 Aligned_cols=192 Identities=17% Similarity=0.202 Sum_probs=151.3
Q ss_pred Eeeec-CCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCcc---------------------------c---------
Q 024868 56 TYVFD-ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT---------------------------D--------- 98 (261)
Q Consensus 56 ~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~---------------------------~--------- 98 (261)
.+.+. .|.+.|.++.|++||++||+|+.|+.|+||.+..... .
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34556 8999999999999999999999999999999976110 0
Q ss_pred --------ccee--------eee-CCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEE
Q 024868 99 --------INLL--------AKK-MPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (261)
Q Consensus 99 --------~~~~--------~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~ 161 (261)
...+ ..+ .....|.+.|.++.||.++ +|++++.|.+|+||++...+++ ..+.|...|+|++
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL-~~F~HndfVTcVa 416 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECL-KVFSHNDFVTCVA 416 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCccee-eEEecCCeeEEEE
Confidence 0000 000 1122356789999999755 8889999999999999877775 5678999999999
Q ss_pred EcC-CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868 162 FSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (261)
Q Consensus 162 ~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~ 240 (261)
|+| |.+|+++|+-|+.++||++...+.+.-...+ . -|++++|.|||++ ++.|+.+|.+++|+++..+.....
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~-lITAvcy~PdGk~-----avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-D-LITAVCYSPDGKG-----AVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehhhh-h-hheeEEeccCCce-----EEEEEeccEEEEEEccCCeEEEee
Confidence 999 8999999999999999999887766554433 3 5999999999998 788999999999999877765333
Q ss_pred ec--c------CcCeeEEEEeeCC
Q 024868 241 RL--L------RKPASVLSISLDG 256 (261)
Q Consensus 241 ~~--~------~~~v~~~~~s~dg 256 (261)
.. + ...|+.++|.|..
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~ 513 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGD 513 (712)
T ss_pred eEeeccCccccCceeeeeEecCCC
Confidence 21 1 2369999998754
No 85
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2.2e-27 Score=187.87 Aligned_cols=215 Identities=14% Similarity=0.180 Sum_probs=180.3
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccc
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD 98 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~ 98 (261)
...++.||.+. ++-.|...... ....+.+|..+|.++.|+++...|++|+.+|+|++||++..+..
T Consensus 40 ~r~~~~Gg~~~--------k~~L~~i~kp~------~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v 105 (825)
T KOG0267|consen 40 SRSLVTGGEDE--------KVNLWAIGKPN------AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV 105 (825)
T ss_pred ceeeccCCCce--------eeccccccCCc------hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh
Confidence 35666776666 44333332221 13348899999999999999999999999999999999977642
Q ss_pred cceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcE
Q 024868 99 INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSA 178 (261)
Q Consensus 99 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 178 (261)
. ....|...+..+.|+|-+.+++.++.|+.+.+||++...+...+..|...+..+.|+|+|++++.+++|..+
T Consensus 106 r-------tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tv 178 (825)
T KOG0267|consen 106 R-------TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTV 178 (825)
T ss_pred h-------hhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCccee
Confidence 2 223456788899999999999999999999999999888877777777789999999999999999999999
Q ss_pred EEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCE
Q 024868 179 RIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKY 258 (261)
Q Consensus 179 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 258 (261)
+|||+..|+....|..|.. .+..+.|+|..-. ++.|+.|+++++||+++.+.+.........|.+.+|+|+|+.
T Consensus 179 ki~d~~agk~~~ef~~~e~-~v~sle~hp~e~L-----la~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~ 252 (825)
T KOG0267|consen 179 KIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVL-----LAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKI 252 (825)
T ss_pred eeecccccccccccccccc-cccccccCchhhh-----hccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCcee
Confidence 9999999999999998776 5999999998776 799999999999999998888776666789999999999987
Q ss_pred Ee
Q 024868 259 LA 260 (261)
Q Consensus 259 la 260 (261)
++
T Consensus 253 ~~ 254 (825)
T KOG0267|consen 253 VL 254 (825)
T ss_pred ee
Confidence 65
No 86
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=5.6e-26 Score=159.96 Aligned_cols=193 Identities=16% Similarity=0.173 Sum_probs=158.5
Q ss_pred eeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCe
Q 024868 57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGH 135 (261)
Q Consensus 57 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~ 135 (261)
..+++|...+.+++|+.+|..|++|+.|+++.+|+++..+.. .......|.+.|-.++|+| +...+++++.|.+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~-----~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ 88 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR-----KELVYRGHTDSVDQLCWDPKHPDLFATASGDKT 88 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh-----hhhcccCCCcchhhheeCCCCCcceEEecCCce
Confidence 467789999999999999999999999999999999877431 1234445667889999998 5678999999999
Q ss_pred EEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcE---------------------------
Q 024868 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA--------------------------- 188 (261)
Q Consensus 136 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~--------------------------- 188 (261)
|++||++++++........+. .-+.|+|+|++++.++.|..|.+.|.++.+.
T Consensus 89 ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~G 167 (313)
T KOG1407|consen 89 IRIWDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNG 167 (313)
T ss_pred EEEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecC
Confidence 999999999987666544433 5578999999999999999998888764322
Q ss_pred --------------EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEee
Q 024868 189 --------------WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL 254 (261)
Q Consensus 189 --------------~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~ 254 (261)
+..++.|. ....++.|+|+|++ +++|+.|..+.+||+...-++..+..+.-+|..++||.
T Consensus 168 lG~v~ILsypsLkpv~si~AH~-snCicI~f~p~Gry-----fA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~ 241 (313)
T KOG1407|consen 168 LGCVEILSYPSLKPVQSIKAHP-SNCICIEFDPDGRY-----FATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH 241 (313)
T ss_pred CceEEEEeccccccccccccCC-cceEEEEECCCCce-----EeeccccceeeccChhHhhhheeeccccCceEEEEecc
Confidence 22233333 24678999999999 79999999999999998777778888899999999999
Q ss_pred CCCEEeC
Q 024868 255 DGKYLAM 261 (261)
Q Consensus 255 dg~~la~ 261 (261)
||++||+
T Consensus 242 dg~~lAS 248 (313)
T KOG1407|consen 242 DGRMLAS 248 (313)
T ss_pred Ccceeec
Confidence 9999985
No 87
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=2.6e-27 Score=179.43 Aligned_cols=193 Identities=17% Similarity=0.214 Sum_probs=164.6
Q ss_pred EEeeecCCCCCceEEEECC-CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC
Q 024868 55 VTYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD 133 (261)
Q Consensus 55 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 133 (261)
..+.+.+|+..|+++.|.| .+.+|++++.|+.|+||++...... ......|..+|.+++|+++|..+++++.|
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~------lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD 279 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRC------LRTFKGHRKPVRDASFNNCGTSFLSASFD 279 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcce------ehhhhcchhhhhhhhccccCCeeeeeecc
Confidence 3568899999999999999 8999999999999999999884321 13334567899999999999999999999
Q ss_pred CeEEEEEccCceEEeeccccCCceeEEEEcCCC-CEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcc
Q 024868 134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP 212 (261)
Q Consensus 134 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 212 (261)
+.+++||+++|+....+. ....+.++.|+|++ +.+++|+.|+.|+.||+++++.++.+..|.+ .|..+.|-++|++
T Consensus 280 ~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg-~i~~i~F~~~g~r- 356 (503)
T KOG0282|consen 280 RFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG-AILDITFVDEGRR- 356 (503)
T ss_pred eeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh-heeeeEEccCCce-
Confidence 999999999999876543 34578999999998 7889999999999999999999888887766 5999999999999
Q ss_pred eEEEEEeeCCCcEEEEEECCCCeEEeeee-ccCcCeeEEEEeeCCCEEe
Q 024868 213 FLFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 213 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~s~dg~~la 260 (261)
.+++++|+++++|+.+.+-.++... .......++..+|++++++
T Consensus 357 ----FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~ 401 (503)
T KOG0282|consen 357 ----FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFA 401 (503)
T ss_pred ----EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeeh
Confidence 5889999999999999887765443 2335677899999999876
No 88
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=5e-25 Score=166.20 Aligned_cols=224 Identities=13% Similarity=0.085 Sum_probs=182.7
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
..+.|++.+++ ..++|+|+.+. .+.+|+.++.+- ...+++|.+.|.+++|-.....|++++.|
T Consensus 203 keil~~avS~D---gkylatgg~d~--------~v~Iw~~~t~eh------v~~~~ghr~~V~~L~fr~gt~~lys~s~D 265 (479)
T KOG0299|consen 203 KEILTLAVSSD---GKYLATGGRDR--------HVQIWDCDTLEH------VKVFKGHRGAVSSLAFRKGTSELYSASAD 265 (479)
T ss_pred ceeEEEEEcCC---CcEEEecCCCc--------eEEEecCcccch------hhcccccccceeeeeeecCccceeeeecC
Confidence 46889999996 78999999999 888999888764 45689999999999999888889999999
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcC
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL 164 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~ 164 (261)
+.+++|+++.... ....+.|...|.++.-..-++.+-+|+.|+++++|++..... ..+.++.+.+.|++|-.
T Consensus 266 rsvkvw~~~~~s~-------vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifrg~~~sidcv~~In 337 (479)
T KOG0299|consen 266 RSVKVWSIDQLSY-------VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFRGGEGSIDCVAFIN 337 (479)
T ss_pred CceEEEehhHhHH-------HHHHhCCccceeeechhcccceEEeccccceeEEEeccccce-eeeeCCCCCeeeEEEec
Confidence 9999999987653 133456778888888877788888888999999999954443 34556666899999974
Q ss_pred CCCEEEEecCCCcEEEEEccCCcEEEEEeecCC-----------CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868 165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-----------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (261)
Q Consensus 165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----------~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~ 233 (261)
...+++|++||.|.+|++.+.+++.+....++ .+|++++..|.... +++++.+|.|++|-+..
T Consensus 338 -~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL-----~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 338 -DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDL-----LASGSWSGCVRLWKIED 411 (479)
T ss_pred -ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCce-----EEecCCCCceEEEEecC
Confidence 55799999999999999999998887654321 26889999998887 79999999999999988
Q ss_pred C----eEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 234 W----NKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 234 ~----~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
+ +++..+. ..+.|++++|+++|++|+
T Consensus 412 g~r~i~~l~~ls-~~GfVNsl~f~~sgk~iv 441 (479)
T KOG0299|consen 412 GLRAINLLYSLS-LVGFVNSLAFSNSGKRIV 441 (479)
T ss_pred Cccccceeeecc-cccEEEEEEEccCCCEEE
Confidence 7 2333333 558899999999999765
No 89
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.5e-25 Score=167.19 Aligned_cols=232 Identities=17% Similarity=0.214 Sum_probs=184.4
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCC-eEEEE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCS 81 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~ 81 (261)
..++|+|+.|+|. ..++.++|.++.. +|+..|...... .+.+.-..-+|.+..|.|+|. .++++
T Consensus 212 s~~~I~sv~FHp~---~plllvaG~d~~l------rifqvDGk~N~~------lqS~~l~~fPi~~a~f~p~G~~~i~~s 276 (514)
T KOG2055|consen 212 SHGGITSVQFHPT---APLLLVAGLDGTL------RIFQVDGKVNPK------LQSIHLEKFPIQKAEFAPNGHSVIFTS 276 (514)
T ss_pred CcCCceEEEecCC---CceEEEecCCCcE------EEEEecCccChh------heeeeeccCccceeeecCCCceEEEec
Confidence 3578999999995 5688888888843 777777665543 223333356899999999999 88888
Q ss_pred ecCCcEEEEEEeCCccccceeeeeCCCCCC--CCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeE
Q 024868 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQD--AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLD 159 (261)
Q Consensus 82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~ 159 (261)
+....++.||+.+.+... ...... ...+..+..||++++|+..+..|.|.+....+++.+..+ ...+.|..
T Consensus 277 ~rrky~ysyDle~ak~~k------~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~-KieG~v~~ 349 (514)
T KOG2055|consen 277 GRRKYLYSYDLETAKVTK------LKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF-KIEGVVSD 349 (514)
T ss_pred ccceEEEEeecccccccc------ccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee-eeccEEee
Confidence 899999999998876411 111111 235677889999999999999999999998888876543 45678999
Q ss_pred EEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC------
Q 024868 160 MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST------ 233 (261)
Q Consensus 160 ~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~------ 233 (261)
+.|+.|++.|++++.+|.|.+||+++..+++++.....-.-++++.++++.+ +++|++.|.|.|||..+
T Consensus 350 ~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~y-----lA~GS~~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 350 FTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSY-----LATGSDSGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCce-----EEeccCcceEEEeccchhhccCC
Confidence 9999999999999999999999999999999998655444567888899998 79999999999999653
Q ss_pred CeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 234 WNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 234 ~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
.+++..+......|++++|+||++.||+
T Consensus 425 PkPik~~dNLtt~Itsl~Fn~d~qiLAi 452 (514)
T KOG2055|consen 425 PKPIKTVDNLTTAITSLQFNHDAQILAI 452 (514)
T ss_pred CCchhhhhhhheeeeeeeeCcchhhhhh
Confidence 4556666667789999999999999874
No 90
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.6e-25 Score=155.26 Aligned_cols=225 Identities=12% Similarity=0.105 Sum_probs=168.4
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC--CCCeEEEEecCCcEEEEEEeCCc
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCSTTNGGCKLFEVYGGA 96 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~~~~~~~ 96 (261)
+..+|++++|+ .|.+|...+.. .......|.+|.++|..++|.. -|.+||+++.||+|.||.-.+++
T Consensus 23 gkrlATcsSD~--------tVkIf~v~~n~---~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~ 91 (299)
T KOG1332|consen 23 GKRLATCSSDG--------TVKIFEVRNNG---QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR 91 (299)
T ss_pred cceeeeecCCc--------cEEEEEEcCCC---CceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc
Confidence 45788998888 55555443322 1233678999999999999954 79999999999999999998874
Q ss_pred cccceeeeeCCCCCCCCCeEEEEEeeC--CcEEEEeccCCeEEEEEccCc-e--EEeeccccCCceeEEEEcCC---C--
Q 024868 97 TDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSL-R--IILDEPKAHKSVLDMDFSLD---S-- 166 (261)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~-~--~~~~~~~~~~~v~~~~~s~~---~-- 166 (261)
- . +......|...|++++|.|. |-.|++++.||.|.+.+.+.. . .......|.-.|.+++|.|. |
T Consensus 92 w-~----k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 92 W-T----KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred h-h----hhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 2 1 11233346789999999995 567889999999999998765 1 11223445568999999985 4
Q ss_pred ---------CEEEEecCCCcEEEEEccCCc--EEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC-
Q 024868 167 ---------EFLATTSTDGSARIWKTEDGV--AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW- 234 (261)
Q Consensus 167 ---------~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~- 234 (261)
+.|++|+.|+.|+||+..+++ ...++..|.+ .|+.++|.|.-.. -..++++++.||++.||-.+.-
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl-~~s~iAS~SqDg~viIwt~~~e~ 244 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGL-PKSTIASCSQDGTVIIWTKDEEY 244 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCC-CceeeEEecCCCcEEEEEecCcc
Confidence 579999999999999998764 3334666666 6999999998654 3445899999999999987632
Q ss_pred eE--EeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 235 NK--IGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 235 ~~--~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
++ ...+......+..+.||..|+.||+
T Consensus 245 e~wk~tll~~f~~~~w~vSWS~sGn~LaV 273 (299)
T KOG1332|consen 245 EPWKKTLLEEFPDVVWRVSWSLSGNILAV 273 (299)
T ss_pred CcccccccccCCcceEEEEEeccccEEEE
Confidence 11 1223345578999999999999985
No 91
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.3e-23 Score=145.60 Aligned_cols=229 Identities=15% Similarity=0.180 Sum_probs=173.0
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC----CCCeE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP----SGDDF 78 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l 78 (261)
..|.|||.+|+|. ..++++|+.+... ++..|+.++.+... ...++.-|.+.|..++|-. .+..|
T Consensus 88 hkgsiyc~~ws~~---geliatgsndk~i------k~l~fn~dt~~~~g---~dle~nmhdgtirdl~fld~~~s~~~il 155 (350)
T KOG0641|consen 88 HKGSIYCTAWSPC---GELIATGSNDKTI------KVLPFNADTCNATG---HDLEFNMHDGTIRDLAFLDDPESGGAIL 155 (350)
T ss_pred cCccEEEEEecCc---cCeEEecCCCceE------EEEecccccccccC---cceeeeecCCceeeeEEecCCCcCceEE
Confidence 4688999999996 5699999988844 88888887765422 2456788999999999953 24456
Q ss_pred EEEec-CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccc--c--
Q 024868 79 VCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK--A-- 153 (261)
Q Consensus 79 ~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~-- 153 (261)
++++. |.+|++-|...++. ......|.+-|..+ ++-++-.+++|+.|.+|++||++-...+..+.. +
T Consensus 156 ~s~gagdc~iy~tdc~~g~~-------~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~ 227 (350)
T KOG0641|consen 156 ASAGAGDCKIYITDCGRGQG-------FHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDG 227 (350)
T ss_pred EecCCCcceEEEeecCCCCc-------ceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCC
Confidence 65543 55666667666653 12223345666554 445688999999999999999987666544321 1
Q ss_pred ---CCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEE
Q 024868 154 ---HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD 230 (261)
Q Consensus 154 ---~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d 230 (261)
.+.|.+++..|.|++|++|-.|.+..+||++.++.++.+..|.. .|+++.|+|...+ +.+++.|..|++-|
T Consensus 228 glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~y-----llt~syd~~ikltd 301 (350)
T KOG0641|consen 228 GLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHY-----LLTCSYDMKIKLTD 301 (350)
T ss_pred CcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceE-----EEEecccceEEEee
Confidence 13689999999999999999999999999999999999998766 5999999998887 79999999999999
Q ss_pred CCCCe----EEeeeeccCcCeeEEEEeeCCC
Q 024868 231 ISTWN----KIGHKRLLRKPASVLSISLDGK 257 (261)
Q Consensus 231 ~~~~~----~~~~~~~~~~~v~~~~~s~dg~ 257 (261)
+...- ++.....|...+..+.|+|..-
T Consensus 302 lqgdla~el~~~vv~ehkdk~i~~rwh~~d~ 332 (350)
T KOG0641|consen 302 LQGDLAHELPIMVVAEHKDKAIQCRWHPQDF 332 (350)
T ss_pred cccchhhcCceEEEEeccCceEEEEecCccc
Confidence 86421 2334456777888888988653
No 92
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=8.1e-25 Score=154.69 Aligned_cols=191 Identities=14% Similarity=0.204 Sum_probs=162.6
Q ss_pred eeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeE
Q 024868 57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL 136 (261)
Q Consensus 57 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 136 (261)
..+++|..+++.+.++.+|.+|++++.|.+..+|-..+++. .-....|.+.|.++..+.+.+.+++|+.|.++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer-------lGty~GHtGavW~~Did~~s~~liTGSAD~t~ 76 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER-------LGTYDGHTGAVWCCDIDWDSKHLITGSADQTA 76 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce-------eeeecCCCceEEEEEecCCcceeeecccccee
Confidence 45789999999999999999999999999999998877664 12234567999999999999999999999999
Q ss_pred EEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCC-----CcEEEEEcc-------CCcEEEEEeecCCCceEEEE
Q 024868 137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTE-------DGVAWTFLTRNSDEKIELCR 204 (261)
Q Consensus 137 ~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~i~iwd~~-------~~~~~~~~~~~~~~~v~~~~ 204 (261)
++||+++|+.+... ....+|..+.|+++|++++...++ +.|.++|++ ..++...+..+.. .++.+-
T Consensus 77 kLWDv~tGk~la~~-k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s-kit~a~ 154 (327)
T KOG0643|consen 77 KLWDVETGKQLATW-KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS-KITSAL 154 (327)
T ss_pred EEEEcCCCcEEEEe-ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcc-ceeeee
Confidence 99999999987554 456789999999999988877653 579999998 4556777776654 589999
Q ss_pred EecCCCcceEEEEEeeCCCcEEEEEECCCCeE-EeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWNK-IGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 205 ~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
|.|-++. ++++.+||.|..||+++|+. +.....|...|++++++||..++++
T Consensus 155 Wg~l~~~-----ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT 207 (327)
T KOG0643|consen 155 WGPLGET-----IIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFIT 207 (327)
T ss_pred ecccCCE-----EEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEe
Confidence 9999998 79999999999999999865 4555678899999999999998764
No 93
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=3.6e-25 Score=166.59 Aligned_cols=205 Identities=14% Similarity=0.216 Sum_probs=156.9
Q ss_pred eEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCcee-cCCeEEeeecCCCCCceEEEECC-CCCeEEEEecCC
Q 024868 8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY-TSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTTNG 85 (261)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg 85 (261)
+.++|++.. .-.+++|+.++ .+..||....... ........+.+|...|..++|++ +...+++++.|+
T Consensus 181 ~glsWn~~~--~g~Lls~~~d~--------~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~ 250 (422)
T KOG0264|consen 181 YGLSWNRQQ--EGTLLSGSDDH--------TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG 250 (422)
T ss_pred ccccccccc--ceeEeeccCCC--------cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence 557887753 55677888888 7777877654431 22334567899999999999999 456778889999
Q ss_pred cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceE-EeeccccCCceeEEEEc
Q 024868 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRI-ILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~s 163 (261)
.+.|||++.... ........|...+.|++|+| ++..||+|+.|++|.+||+++... +..+..|...|..+.||
T Consensus 251 ~L~iwD~R~~~~-----~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WS 325 (422)
T KOG0264|consen 251 KLMIWDTRSNTS-----KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWS 325 (422)
T ss_pred eEEEEEcCCCCC-----CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeC
Confidence 999999996311 01133345678999999999 667889999999999999998654 45666777799999999
Q ss_pred CC-CCEEEEecCCCcEEEEEccCC--------------cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEE
Q 024868 164 LD-SEFLATTSTDGSARIWKTEDG--------------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAV 228 (261)
Q Consensus 164 ~~-~~~l~~~~~d~~i~iwd~~~~--------------~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~ 228 (261)
|+ ...||+++.|+.+.+||+..- +++..--+|.. .|..+.|+|...+. +++..+|+.+.|
T Consensus 326 Ph~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~----I~SvaeDN~LqI 400 (422)
T KOG0264|consen 326 PHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWT----IASVAEDNILQI 400 (422)
T ss_pred CCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeE----EEEecCCceEEE
Confidence 95 568889999999999999631 12233334444 69999999999984 688999999999
Q ss_pred EECC
Q 024868 229 YDIS 232 (261)
Q Consensus 229 ~d~~ 232 (261)
|++.
T Consensus 401 W~~s 404 (422)
T KOG0264|consen 401 WQMA 404 (422)
T ss_pred eecc
Confidence 9986
No 94
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.2e-24 Score=154.89 Aligned_cols=194 Identities=17% Similarity=0.230 Sum_probs=160.6
Q ss_pred EeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCc--EEEEeccC
Q 024868 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS--RFAAGGVD 133 (261)
Q Consensus 56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~d 133 (261)
...+..|.+.+++++. ++.++++|+.|.+|+|||+..... ....+.|.+.|+++.|.+.-. .|++|+.|
T Consensus 36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~q-------lg~ll~HagsitaL~F~~~~S~shLlS~sdD 106 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQ-------LGILLSHAGSITALKFYPPLSKSHLLSGSDD 106 (362)
T ss_pred cccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhh-------hcceeccccceEEEEecCCcchhheeeecCC
Confidence 4567889999999999 589999999999999999988764 133455679999999999764 89999999
Q ss_pred CeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcce
Q 024868 134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213 (261)
Q Consensus 134 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 213 (261)
|.|.+|+...-+.+..+..|.+.|+.++.+|.|++.++.+.|+.++.||+-+|+.-..+.-.+. .+.+.|+|.|.+++
T Consensus 107 G~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~--at~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 107 GHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK--ATLVSWSPQGDHFV 184 (362)
T ss_pred CcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc--ceeeEEcCCCCEEE
Confidence 9999999999988888888988999999999999999999999999999998887665554333 45578888888633
Q ss_pred EE----------------------------------EEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEE--eeCCC
Q 024868 214 LF----------------------------------CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI--SLDGK 257 (261)
Q Consensus 214 ~~----------------------------------~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--s~dg~ 257 (261)
+. .+++|++|+.|.+||..+..+...+..|...|.++.+ .|++.
T Consensus 185 v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~ 264 (362)
T KOG0294|consen 185 VSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHE 264 (362)
T ss_pred EEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCce
Confidence 22 1356889999999999998888888899999888874 24455
Q ss_pred EEe
Q 024868 258 YLA 260 (261)
Q Consensus 258 ~la 260 (261)
||+
T Consensus 265 ~lv 267 (362)
T KOG0294|consen 265 YLV 267 (362)
T ss_pred EEE
Confidence 654
No 95
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=9.6e-25 Score=164.91 Aligned_cols=228 Identities=12% Similarity=0.108 Sum_probs=181.8
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
-|||.|++-+|. +.+++.|+-.+ .+|.|...++.+ ...+..|-..|+++.|+-||..|++|+.
T Consensus 81 Pg~v~al~s~n~---G~~l~ag~i~g--------~lYlWelssG~L------L~v~~aHYQ~ITcL~fs~dgs~iiTgsk 143 (476)
T KOG0646|consen 81 PGPVHALASSNL---GYFLLAGTISG--------NLYLWELSSGIL------LNVLSAHYQSITCLKFSDDGSHIITGSK 143 (476)
T ss_pred ccceeeeecCCC---ceEEEeecccC--------cEEEEEeccccH------HHHHHhhccceeEEEEeCCCcEEEecCC
Confidence 478999998885 56777776888 899999999887 5567889999999999999999999999
Q ss_pred CCcEEEEEEeCCccccc--eeeeeCCCCCCCCCeEEEEEeeC--CcEEEEeccCCeEEEEEccCceEEeeccccCCceeE
Q 024868 84 NGGCKLFEVYGGATDIN--LLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLD 159 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~ 159 (261)
||.|.+|.+-+--.... ..........|.-+|+++...+. ..++++++.|.++++||+..+..+... .....+.+
T Consensus 144 Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti-~fp~si~a 222 (476)
T KOG0646|consen 144 DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI-TFPSSIKA 222 (476)
T ss_pred CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE-ecCCccee
Confidence 99999999854321110 11112223345678999888774 358999999999999999988776543 45568999
Q ss_pred EEEcCCCCEEEEecCCCcEEEEEccCC----------------cEEEEEeecCC-CceEEEEEecCCCcceEEEEEeeCC
Q 024868 160 MDFSLDSEFLATTSTDGSARIWKTEDG----------------VAWTFLTRNSD-EKIELCRFSKDGTKPFLFCTVQRGD 222 (261)
Q Consensus 160 ~~~s~~~~~l~~~~~d~~i~iwd~~~~----------------~~~~~~~~~~~-~~v~~~~~~p~~~~~~~~~~~~~~~ 222 (261)
++.+|.++.++.|+.+|.|.+.++.+- ..+..+.+|.+ ..|++++.+-||.. +++|+.
T Consensus 223 v~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgtl-----LlSGd~ 297 (476)
T KOG0646|consen 223 VALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTL-----LLSGDE 297 (476)
T ss_pred EEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccE-----EEeeCC
Confidence 999999999999999999999887532 23445556655 46999999999998 799999
Q ss_pred CcEEEEEECCCCeEEeeeeccCcCeeEEEEee
Q 024868 223 KALLAVYDISTWNKIGHKRLLRKPASVLSISL 254 (261)
Q Consensus 223 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~ 254 (261)
||.+.|||+.+.+.++++....++|+.+.+.|
T Consensus 298 dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 298 DGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred CCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence 99999999999888877776778888888854
No 96
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=3.1e-25 Score=160.10 Aligned_cols=233 Identities=16% Similarity=0.197 Sum_probs=180.5
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
..+|.++.|+|. ...+++|+.|+ .+..||...... ......-....+|.++.|+|.|.+|++|.+
T Consensus 172 ~devn~l~FHPr---e~ILiS~srD~--------tvKlFDfsK~sa----KrA~K~~qd~~~vrsiSfHPsGefllvgTd 236 (430)
T KOG0640|consen 172 VDEVNDLDFHPR---ETILISGSRDN--------TVKLFDFSKTSA----KRAFKVFQDTEPVRSISFHPSGEFLLVGTD 236 (430)
T ss_pred cCcccceeecch---hheEEeccCCC--------eEEEEecccHHH----HHHHHHhhccceeeeEeecCCCceEEEecC
Confidence 457999999995 66899999988 666666544322 001112234568999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCC--ceeEEE
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK--SVLDMD 161 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~v~~~~ 161 (261)
-.++++||+++.++-.. ......|.+.|+++.+|+.+++.++++.||.|++||--+++++..+...|+ .|.+..
T Consensus 237 Hp~~rlYdv~T~Qcfvs----anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~ 312 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQCFVS----ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAV 312 (430)
T ss_pred CCceeEEeccceeEeee----cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEE
Confidence 99999999999876322 234456789999999999999999999999999999888888777665554 699999
Q ss_pred EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC----CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEE
Q 024868 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD----EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI 237 (261)
Q Consensus 162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~ 237 (261)
|..+|+++++.+.|..+++|.+.+++++.++.+... ..-+...|+....+. ++.-...+.+.-||.++...+
T Consensus 313 Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyV----l~pDEas~slcsWdaRtadr~ 388 (430)
T KOG0640|consen 313 FTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYV----LFPDEASNSLCSWDARTADRV 388 (430)
T ss_pred EccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceE----EccccccCceeeccccchhhh
Confidence 999999999999999999999999999998875421 012345577777662 344445678999999988765
Q ss_pred eee-eccCcCeeEEEEeeCCCEE
Q 024868 238 GHK-RLLRKPASVLSISLDGKYL 259 (261)
Q Consensus 238 ~~~-~~~~~~v~~~~~s~dg~~l 259 (261)
... .+|.+.+..+.-||.+.-+
T Consensus 389 ~l~slgHn~a~R~i~HSP~~p~F 411 (430)
T KOG0640|consen 389 ALLSLGHNGAVRWIVHSPVEPAF 411 (430)
T ss_pred hhcccCCCCCceEEEeCCCCCce
Confidence 443 3678888888888877544
No 97
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=8.5e-24 Score=168.45 Aligned_cols=238 Identities=14% Similarity=0.141 Sum_probs=186.5
Q ss_pred CCCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCc-eecCCeEEeeecCCCCCceEEEECCCCCeEEE
Q 024868 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS-VYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC 80 (261)
Q Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 80 (261)
.....+.+++|.|.+...+.++.- .+|.+..+..+..... ..........+.+|...|.+++++.+...+++
T Consensus 318 r~~~kiks~dv~~~~~~~~~lv~l-------~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~S 390 (888)
T KOG0306|consen 318 RTSAKIKSFDVTPSGGTENTLVLL-------ANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLAS 390 (888)
T ss_pred echhheeEEEEEecCCcceeEEEe-------ecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeee
Confidence 345678999999988666455541 1234477777763222 11222345678899999999999998877777
Q ss_pred EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEE
Q 024868 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (261)
Q Consensus 81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~ 160 (261)
+ ..+.+++|+..+.++ +.++.. +.+.+..|-|.+++++.|...|.+.+||+.+...+.....|.+.|+++
T Consensus 391 g-a~~SikiWn~~t~kc--------iRTi~~-~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi 460 (888)
T KOG0306|consen 391 G-AGESIKIWNRDTLKC--------IRTITC-GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSI 460 (888)
T ss_pred c-CCCcEEEEEccCcce--------eEEecc-ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeee
Confidence 6 456799999998876 333322 378889999999999999999999999999988887788888999999
Q ss_pred EEcCCCCEEEEecCCCcEEEEEccC-----CcEEEEEeec------CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEE
Q 024868 161 DFSLDSEFLATTSTDGSARIWKTED-----GVAWTFLTRN------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY 229 (261)
Q Consensus 161 ~~s~~~~~l~~~~~d~~i~iwd~~~-----~~~~~~~~~~------~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~ 229 (261)
+.+||++.+++++.|.+|++||..- |...+.+.-+ ....|.++.+||||++ ++.+--|+++++|
T Consensus 461 ~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~-----LaVsLLdnTVkVy 535 (888)
T KOG0306|consen 461 SLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL-----LAVSLLDNTVKVY 535 (888)
T ss_pred eecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE-----EEEEeccCeEEEE
Confidence 9999999999999999999999751 2221111111 1234999999999998 6777789999999
Q ss_pred ECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 230 DISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 230 d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
-+.+.+..-.+.+|.-||.+|..|||++.+++
T Consensus 536 flDtlKFflsLYGHkLPV~smDIS~DSklivT 567 (888)
T KOG0306|consen 536 FLDTLKFFLSLYGHKLPVLSMDISPDSKLIVT 567 (888)
T ss_pred EecceeeeeeecccccceeEEeccCCcCeEEe
Confidence 99999988788999999999999999999874
No 98
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=4.1e-24 Score=157.82 Aligned_cols=216 Identities=16% Similarity=0.143 Sum_probs=176.2
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC---CCeEEEEecCCcEEEEEEeCC
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS---GDDFVCSTTNGGCKLFEVYGG 95 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~~~~~~ 95 (261)
...|.+|+.|| .+..||..+.. ...+.+|.+++.+++|... ...+++++.|.++++|..+.+
T Consensus 115 ~~~IltgsYDg--------~~riWd~~Gk~-------~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 115 SKWILTGSYDG--------TSRIWDLKGKS-------IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred CceEEEeecCC--------eeEEEecCCce-------EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 45788999999 88888887765 6678899999998888432 336999999999999999887
Q ss_pred ccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC-------------------------ceEEeec
Q 024868 96 ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-------------------------LRIILDE 150 (261)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~-------------------------~~~~~~~ 150 (261)
....... .....|...|.++...++|..+++|+.|..|.+|+..+ +.++..+
T Consensus 180 ~~~~~~~---~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl 256 (423)
T KOG0313|consen 180 ENKVKAL---KVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL 256 (423)
T ss_pred hhhhhHH---hHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence 6544332 22236788999999999999999999999999999321 1123344
Q ss_pred cccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEE
Q 024868 151 PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD 230 (261)
Q Consensus 151 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d 230 (261)
.+|.++|.++.|++ ...+++++.|.+|+.||+.+++.+.++.... ...++..+|..+. +++++.|..+++||
T Consensus 257 ~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k--sl~~i~~~~~~~L-----l~~gssdr~irl~D 328 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK--SLNCISYSPLSKL-----LASGSSDRHIRLWD 328 (423)
T ss_pred cccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc--ceeEeecccccce-----eeecCCCCceeecC
Confidence 56778999999998 6789999999999999999999988887543 5899999998887 79999999999999
Q ss_pred CCCCe---EEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 231 ISTWN---KIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 231 ~~~~~---~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
.+++. ...++.+|.+.|.++.|+|...++.
T Consensus 329 PR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~ 361 (423)
T KOG0313|consen 329 PRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQL 361 (423)
T ss_pred CCCCCCceeEEeeecchhhhhheecCCCCceEE
Confidence 98764 2356778999999999999877654
No 99
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.9e-25 Score=158.78 Aligned_cols=173 Identities=14% Similarity=0.223 Sum_probs=132.1
Q ss_pred CeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccc--------------------------------
Q 024868 53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN-------------------------------- 100 (261)
Q Consensus 53 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-------------------------------- 100 (261)
|.....+++|.+.|++++|+.||++|++++.|+.|++|++++......
T Consensus 76 pl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 76 PLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred chhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCC
Confidence 444567899999999999999999999999999999999986432000
Q ss_pred ------eeeeeCC--------------CCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEE
Q 024868 101 ------LLAKKMP--------------PLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (261)
Q Consensus 101 ------~~~~~~~--------------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~ 160 (261)
...+... .-.|.-.+..+-..-.+++|++++.|..|.+|+++ |+.+..+......-+..
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA 234 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence 0000000 00112234445555567889999999999999997 77766666555567888
Q ss_pred EEcCCCCEEEEecCCCcEEEEEcc---CC-----cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868 161 DFSLDSEFLATTSTDGSARIWKTE---DG-----VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (261)
Q Consensus 161 ~~s~~~~~l~~~~~d~~i~iwd~~---~~-----~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~ 232 (261)
+.||+|+++++++..--|++|..- .| ..+..+++|.. .|..++|+++.++ +++.+.||++++||+.
T Consensus 235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~s-aV~~~aFsn~S~r-----~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQS-AVLAAAFSNSSTR-----AVTVSKDGKWRIWDTD 308 (420)
T ss_pred eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchh-heeeeeeCCCcce-----eEEEecCCcEEEeecc
Confidence 999999999999998899999863 22 24556777766 5999999999999 7999999999999975
No 100
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=3.1e-24 Score=164.04 Aligned_cols=187 Identities=14% Similarity=0.140 Sum_probs=157.9
Q ss_pred CCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEc
Q 024868 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (261)
Q Consensus 62 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~ 141 (261)
...-+.++...|||+.|++|++-.++.|||+.......+. ......-.++.++.+||.+..+++..||.|.|||+
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprika-----eltssapaCyALa~spDakvcFsccsdGnI~vwDL 538 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKA-----ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDL 538 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhh-----hcCCcchhhhhhhcCCccceeeeeccCCcEEEEEc
Confidence 3457889999999999999999999999999876542221 11111245788999999999999999999999999
Q ss_pred cCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeC
Q 024868 142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG 221 (261)
Q Consensus 142 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~ 221 (261)
.+...++.+.+|...+.|+..++||..|-+|+-|++|+-||+++++.+..... ...|.++..+|.+.+ ++.|.
T Consensus 539 hnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF--~SQIfSLg~cP~~dW-----lavGM 611 (705)
T KOG0639|consen 539 HNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF--SSQIFSLGYCPTGDW-----LAVGM 611 (705)
T ss_pred ccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhh--hhhheecccCCCccc-----eeeec
Confidence 99999999999999999999999999999999999999999999987665442 335999999999999 68899
Q ss_pred CCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 222 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+++.+.+......+. ..+..|+..|.++.|++.|+++++
T Consensus 612 ens~vevlh~skp~k-yqlhlheScVLSlKFa~cGkwfvS 650 (705)
T KOG0639|consen 612 ENSNVEVLHTSKPEK-YQLHLHESCVLSLKFAYCGKWFVS 650 (705)
T ss_pred ccCcEEEEecCCccc-eeecccccEEEEEEecccCceeee
Confidence 999999988766554 357788899999999999999874
No 101
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=1.3e-22 Score=156.44 Aligned_cols=224 Identities=17% Similarity=0.143 Sum_probs=157.7
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE-ecC
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TTN 84 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d 84 (261)
.+.+++|+|+. ..++++++.++ .++.||..+.+. ...+..+. .+..++|+|+++.++++ ..+
T Consensus 32 ~~~~l~~~~dg--~~l~~~~~~~~--------~v~~~d~~~~~~------~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~ 94 (300)
T TIGR03866 32 RPRGITLSKDG--KLLYVCASDSD--------TIQVIDLATGEV------IGTLPSGP-DPELFALHPNGKILYIANEDD 94 (300)
T ss_pred CCCceEECCCC--CEEEEEECCCC--------eEEEEECCCCcE------EEeccCCC-CccEEEECCCCCEEEEEcCCC
Confidence 35678888753 34556676777 788899877654 22333333 35678999999977655 457
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC-eEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-HLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
+.+++||+.+.... ..+.....+.+++|+|++++++++..++ .+.+||.++++...... .......++|+
T Consensus 95 ~~l~~~d~~~~~~~--------~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s 165 (300)
T TIGR03866 95 NLVTVIDIETRKVL--------AEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFT 165 (300)
T ss_pred CeEEEEECCCCeEE--------eEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEEC
Confidence 89999999875431 1112223467899999999999887665 56778988776644332 23345789999
Q ss_pred CCCCEEEEe-cCCCcEEEEEccCCcEEEEEeecCC------CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868 164 LDSEFLATT-STDGSARIWKTEDGVAWTFLTRNSD------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (261)
Q Consensus 164 ~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~------~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~ 236 (261)
|++++++++ ..++.|++||+++++.+..+..+.. .....++|+|++++++ ++.+.++.+.+||+++++.
T Consensus 166 ~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~----~~~~~~~~i~v~d~~~~~~ 241 (300)
T TIGR03866 166 ADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAF----VALGPANRVAVVDAKTYEV 241 (300)
T ss_pred CCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEE----EEcCCCCeEEEEECCCCcE
Confidence 999988655 4689999999999987776643211 1234688999999732 3334566899999998887
Q ss_pred EeeeeccCcCeeEEEEeeCCCEEe
Q 024868 237 IGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 237 ~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
+.... +...+.+++|+|+|++|+
T Consensus 242 ~~~~~-~~~~~~~~~~~~~g~~l~ 264 (300)
T TIGR03866 242 LDYLL-VGQRVWQLAFTPDEKYLL 264 (300)
T ss_pred EEEEE-eCCCcceEEECCCCCEEE
Confidence 65443 445788999999999886
No 102
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.8e-23 Score=149.40 Aligned_cols=216 Identities=15% Similarity=0.129 Sum_probs=158.6
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCC--eEEE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD--DFVC 80 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~ 80 (261)
..++|+|+|.+.. ++|+|+.|. +|..||.....- ...+-.|.+.|+++.|.++.. .|++
T Consensus 42 H~~sitavAVs~~-----~~aSGssDe--------tI~IYDm~k~~q------lg~ll~HagsitaL~F~~~~S~shLlS 102 (362)
T KOG0294|consen 42 HAGSITALAVSGP-----YVASGSSDE--------TIHIYDMRKRKQ------LGILLSHAGSITALKFYPPLSKSHLLS 102 (362)
T ss_pred cccceeEEEecce-----eEeccCCCC--------cEEEEeccchhh------hcceeccccceEEEEecCCcchhheee
Confidence 3578899988653 899999999 999999876542 334667899999999998764 8999
Q ss_pred EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecccc-------
Q 024868 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA------- 153 (261)
Q Consensus 81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~------- 153 (261)
|+.||.|.+|+....... ...-.|.+.|+.++.+|.+++.++.+.|+.+++|++-+++......-.
T Consensus 103 ~sdDG~i~iw~~~~W~~~-------~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~ 175 (362)
T KOG0294|consen 103 GSDDGHIIIWRVGSWELL-------KSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVS 175 (362)
T ss_pred ecCCCcEEEEEcCCeEEe-------eeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeE
Confidence 999999999999877541 111235677999999999999999999999999998665432111100
Q ss_pred --------------------------------CCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceE
Q 024868 154 --------------------------------HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIE 201 (261)
Q Consensus 154 --------------------------------~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 201 (261)
...+.++.|- ++..|++|.+|+.|.+||.....+...+..|.. +|-
T Consensus 176 w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~-RVK 253 (362)
T KOG0294|consen 176 WSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN-RVK 253 (362)
T ss_pred EcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchh-hee
Confidence 0112233332 346788888899999999998899888888876 588
Q ss_pred EEEEe--cCCCcceEEEEEeeCCCcEEEEEECCCC-----eEEeeeeccCcCeeEEEE
Q 024868 202 LCRFS--KDGTKPFLFCTVQRGDKALLAVYDISTW-----NKIGHKRLLRKPASVLSI 252 (261)
Q Consensus 202 ~~~~~--p~~~~~~~~~~~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~~v~~~~~ 252 (261)
++.+- |++.+ +++++.||.|++||++.. +.+..... +..++|+..
T Consensus 254 ~i~~~~~~~~~~-----lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 254 DIASYTNPEHEY-----LVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred eeEEEecCCceE-----EEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence 88753 45555 799999999999999865 23333332 445555544
No 103
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=1e-23 Score=170.39 Aligned_cols=212 Identities=14% Similarity=0.174 Sum_probs=180.3
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
.+.|.++++.. ...++++|+.|. ++..||..++.+ .+.+.+|...+.++... ...+++|+.
T Consensus 249 ~g~V~~l~~~~---~~~~lvsgS~D~--------t~rvWd~~sg~C------~~~l~gh~stv~~~~~~--~~~~~sgs~ 309 (537)
T KOG0274|consen 249 FGGVWGLAFPS---GGDKLVSGSTDK--------TERVWDCSTGEC------THSLQGHTSSVRCLTID--PFLLVSGSR 309 (537)
T ss_pred CCCceeEEEec---CCCEEEEEecCC--------cEEeEecCCCcE------EEEecCCCceEEEEEcc--CceEeeccC
Confidence 57888888875 366999999999 899999888887 78899999999998874 446788899
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCC-CCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 162 (261)
|.+|++|++.++.. ...+. |.++|+++..+ +.++++|+.|++|.+||+.+++.+..+.+|...|+++.+
T Consensus 310 D~tVkVW~v~n~~~--------l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~ 379 (537)
T KOG0274|consen 310 DNTVKVWDVTNGAC--------LNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIV 379 (537)
T ss_pred CceEEEEeccCcce--------EEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEe
Confidence 99999999997765 33444 78999999987 789999999999999999999999999999999999988
Q ss_pred cCCCCEEEEecCCCcEEEEEccCC-cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868 163 SLDSEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (261)
Q Consensus 163 s~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~ 241 (261)
.+. ..+++|+.|+.|++||+++. +++.++..|... +..+ ...++. +++++.|++|++||..+++.+..+.
T Consensus 380 ~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~-v~~l--~~~~~~-----Lvs~~aD~~Ik~WD~~~~~~~~~~~ 450 (537)
T KOG0274|consen 380 DSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL-VSSL--LLRDNF-----LVSSSADGTIKLWDAEEGECLRTLE 450 (537)
T ss_pred cCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc-cccc--ccccce-----eEeccccccEEEeecccCceeeeec
Confidence 765 89999999999999999999 999999877653 5444 445566 6899999999999999999998887
Q ss_pred c-cCcCeeEEEEe
Q 024868 242 L-LRKPASVLSIS 253 (261)
Q Consensus 242 ~-~~~~v~~~~~s 253 (261)
. +...+..+++.
T Consensus 451 ~~~~~~v~~l~~~ 463 (537)
T KOG0274|consen 451 GRHVGGVSALALG 463 (537)
T ss_pred cCCcccEEEeecC
Confidence 7 55777777765
No 104
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=1.1e-23 Score=151.21 Aligned_cols=197 Identities=15% Similarity=0.174 Sum_probs=156.8
Q ss_pred ecCCCCCceEEEECC-CCCeEEEEecCCcEEEEEEeCCcc--ccceee------eeCCCCCCCCCeEEEEEee-CCcEEE
Q 024868 59 FDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGAT--DINLLA------KKMPPLQDAGPQKCLSFSV-DGSRFA 128 (261)
Q Consensus 59 ~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~--~~~~~~------~~~~~~~~~~~v~~~~~s~-~~~~l~ 128 (261)
...|.+.|.++.+.+ .|+++++|+.||.+.+||++.... ...+.. .....-.|+-.|.++.|-| |.-.+.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 456889999999987 799999999999999999987652 111111 1122334566899999999 666888
Q ss_pred EeccCCeEEEEEccCceEEeeccccCCceeEEEEcCC---CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEE
Q 024868 129 AGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD---SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF 205 (261)
Q Consensus 129 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 205 (261)
+++-|.++++||..+.+... .+...+.|++-+|||- --++|+|..|-+|++.|+.+|...+.+.+|.+. |.++.|
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~-~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~-vlaV~W 196 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAV-DFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG-VLAVEW 196 (397)
T ss_pred cccccceEEEeecccceeeE-EeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc-eEEEEe
Confidence 88999999999999887754 4456678999999994 347888889999999999999999999999875 999999
Q ss_pred ecCCCcceEEEEEeeCCCcEEEEEECCCC-eEE--------------eeeeccCcCeeEEEEeeCCCEEeC
Q 024868 206 SKDGTKPFLFCTVQRGDKALLAVYDISTW-NKI--------------GHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 206 ~p~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~~--------------~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+|...++ +++++.||.|++||++.- .+. +....|.+.+..++|+.||+++++
T Consensus 197 sp~~e~v----LatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~ 263 (397)
T KOG4283|consen 197 SPSSEWV----LATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLAS 263 (397)
T ss_pred ccCceeE----EEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhh
Confidence 9999984 799999999999999743 111 122345578899999999998863
No 105
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=8.9e-24 Score=159.65 Aligned_cols=232 Identities=15% Similarity=0.158 Sum_probs=180.7
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCC-CCCceEEEECCCCCeEEEEe
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-EGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~ 82 (261)
+.||.+++|.|.. ...+++++... .++.||..+.++.. ...+.++ ...+..+.++|++++|+..+
T Consensus 257 ~fPi~~a~f~p~G--~~~i~~s~rrk--------y~ysyDle~ak~~k----~~~~~g~e~~~~e~FeVShd~~fia~~G 322 (514)
T KOG2055|consen 257 KFPIQKAEFAPNG--HSVIFTSGRRK--------YLYSYDLETAKVTK----LKPPYGVEEKSMERFEVSHDSNFIAIAG 322 (514)
T ss_pred cCccceeeecCCC--ceEEEecccce--------EEEEeecccccccc----ccCCCCcccchhheeEecCCCCeEEEcc
Confidence 5799999999953 44677777777 78999998877522 1122333 34577899999999999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCC-ceeEEE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMD 161 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~ 161 (261)
..|.|.+....+++. +..+.-.+.|..++|+.|++.|++++.+|.|++||+++...+..+....+ .-++++
T Consensus 323 ~~G~I~lLhakT~el--------i~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~ 394 (514)
T KOG2055|consen 323 NNGHIHLLHAKTKEL--------ITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLC 394 (514)
T ss_pred cCceEEeehhhhhhh--------hheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeee
Confidence 999999999988875 55555678899999999999999999999999999999877665544333 346777
Q ss_pred EcCCCCEEEEecCCCcEEEEEccC------CcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868 162 FSLDSEFLATTSTDGSARIWKTED------GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (261)
Q Consensus 162 ~s~~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~ 235 (261)
.++++.+||+|+..|.|.|||.++ .++++.+..-.. .|+++.|+||.+.+. +++...+..+++-.+.+..
T Consensus 395 ~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt-~Itsl~Fn~d~qiLA---iaS~~~knalrLVHvPS~T 470 (514)
T KOG2055|consen 395 ISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTT-AITSLQFNHDAQILA---IASRVKKNALRLVHVPSCT 470 (514)
T ss_pred ecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhe-eeeeeeeCcchhhhh---hhhhccccceEEEecccee
Confidence 889999999999999999999753 455655544333 499999999999742 4566677889999998876
Q ss_pred EEeeeeccC---cCeeEEEEeeCCCEEeC
Q 024868 236 KIGHKRLLR---KPASVLSISLDGKYLAM 261 (261)
Q Consensus 236 ~~~~~~~~~---~~v~~~~~s~dg~~la~ 261 (261)
....+.... +.+++++|||.|-+||+
T Consensus 471 VFsNfP~~n~~vg~vtc~aFSP~sG~lAv 499 (514)
T KOG2055|consen 471 VFSNFPTSNTKVGHVTCMAFSPNSGYLAV 499 (514)
T ss_pred eeccCCCCCCcccceEEEEecCCCceEEe
Confidence 655444332 57899999999999985
No 106
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.4e-23 Score=164.73 Aligned_cols=198 Identities=12% Similarity=0.129 Sum_probs=164.0
Q ss_pred eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEE-CCCCCeEEEEecCCcEEEEEEeCCcc-
Q 024868 20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV-NPSGDDFVCSTTNGGCKLFEVYGGAT- 97 (261)
Q Consensus 20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~i~~~~~~~~- 97 (261)
+.+++++.|. .|..|+.....- .....+..|.+-|.|+++ .++...+|+|+-|+.|.+||+..+..
T Consensus 86 ~tlIS~SsDt--------TVK~W~~~~~~~----~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~ 153 (735)
T KOG0308|consen 86 KTLISASSDT--------TVKVWNAHKDNT----FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTAT 153 (735)
T ss_pred CceEEecCCc--------eEEEeecccCcc----hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchh
Confidence 3566666666 677777655431 124568889999999999 78888999999999999999997732
Q ss_pred -ccceeeeeCC--CCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC
Q 024868 98 -DINLLAKKMP--PLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST 174 (261)
Q Consensus 98 -~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 174 (261)
.......... ...+...|++++.++.|..|++|+..+.+++||.++++.+.++.+|...|..+..++||+.+++++.
T Consensus 154 l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS 233 (735)
T KOG0308|consen 154 LVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS 233 (735)
T ss_pred hhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC
Confidence 1111100111 1145688999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868 175 DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (261)
Q Consensus 175 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~ 235 (261)
||+|++||+...+++.++..|..+ |+++..+|+=+. +.+|+.||.|+.=|+++..
T Consensus 234 DgtIrlWdLgqQrCl~T~~vH~e~-VWaL~~~~sf~~-----vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 234 DGTIRLWDLGQQRCLATYIVHKEG-VWALQSSPSFTH-----VYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred CceEEeeeccccceeeeEEeccCc-eEEEeeCCCcce-----EEecCCCCcEEecccCCch
Confidence 999999999999999999998886 999999988887 7899999999999998853
No 107
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=1.6e-23 Score=158.15 Aligned_cols=235 Identities=17% Similarity=0.182 Sum_probs=171.0
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC-CCCeEEEEe
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCST 82 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 82 (261)
.++|+|++|+|.. ...++++|...| +|-.||..+..- .......+..|..+|.++.|+| +-..+++.+
T Consensus 186 ~~Rit~l~fHPt~-~~~lva~GdK~G--------~VG~Wn~~~~~~--d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 186 DRRITSLAFHPTE-NRKLVAVGDKGG--------QVGLWNFGTQEK--DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred ccceEEEEecccC-cceEEEEccCCC--------cEEEEecCCCCC--ccCceEEeccCCccccceEecCCChhheeeec
Confidence 4789999999975 468999999999 776777642221 1122457888999999999999 456788889
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE-EeeccccCCceeEEE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-ILDEPKAHKSVLDMD 161 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~ 161 (261)
.||+|+.-|++........ ..-.......++.|+.+...++++..-|...+||.++++. ...+.-|...|.+++
T Consensus 255 yDGtiR~~D~~~~i~e~v~-----s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~ 329 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVL-----SLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVA 329 (498)
T ss_pred cCceeeeeeecchhhHHHh-----hcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceee
Confidence 9999999999877531111 1111234567888998888888888888999999998765 344445566899999
Q ss_pred EcC-CCCEEEEecCCCcEEEEEccCCcEE----EEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC----
Q 024868 162 FSL-DSEFLATTSTDGSARIWKTEDGVAW----TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS---- 232 (261)
Q Consensus 162 ~s~-~~~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~---- 232 (261)
++| ...++++++.|++++|||++.-+.. -....|. ..|.++.|||++-. +++.+.|..|+|||..
T Consensus 330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hr-rsV~sAyFSPs~gt-----l~TT~~D~~IRv~dss~~sa 403 (498)
T KOG4328|consen 330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHR-RSVNSAYFSPSGGT-----LLTTCQDNEIRVFDSSCISA 403 (498)
T ss_pred cCCCCchheeecccCcceeeeehhhhcCCCCcceeccccc-ceeeeeEEcCCCCc-----eEeeccCCceEEeecccccc
Confidence 999 5668899999999999999853322 2223343 46999999999887 6899999999999983
Q ss_pred CCeEEeeeeccC----c--CeeEEEEeeCCCEEeC
Q 024868 233 TWNKIGHKRLLR----K--PASVLSISLDGKYLAM 261 (261)
Q Consensus 233 ~~~~~~~~~~~~----~--~v~~~~~s~dg~~la~ 261 (261)
.-++...+. |. . ......|.||..++++
T Consensus 404 ~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~v 437 (498)
T KOG4328|consen 404 KDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVV 437 (498)
T ss_pred cCCccceee-ccCcccccccchhheeCCCccEEEE
Confidence 223332222 22 1 2345679998888764
No 108
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.6e-24 Score=170.32 Aligned_cols=208 Identities=12% Similarity=0.143 Sum_probs=156.5
Q ss_pred EEEEEcCCCCceecCCeEEeeecCC---CCCceEEEECC-CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDES---EGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAG 113 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 113 (261)
.++.+++....... ....+.. .-.+..+.|+. +.++||+++..|.|.+||+........ ....-.|..
T Consensus 63 klyai~~~~~~~~~----~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~----l~~f~EH~R 134 (839)
T KOG0269|consen 63 KLYAINPNDFSEKC----NHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKL----LTVFNEHER 134 (839)
T ss_pred eeEeeCcccCCcce----eeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccccchh----hhHhhhhcc
Confidence 78888776554311 1111111 12466788875 578899999999999999976321000 012234677
Q ss_pred CeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcC-CCCEEEEecCCCcEEEEEccCC-cEEE
Q 024868 114 PQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDG-VAWT 190 (261)
Q Consensus 114 ~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~-~~~~ 190 (261)
.+.++.|++ ...+|++|+.||.|++||++..+....+......|+++.|+| .+.+++++.+.|.+++||++.. ++..
T Consensus 135 s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~ 214 (839)
T KOG0269|consen 135 SANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK 214 (839)
T ss_pred ceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH
Confidence 899999998 567899999999999999998887777777667899999999 5778999999999999999964 4555
Q ss_pred EEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee-eccCcCeeEEEEeeCCCEE
Q 024868 191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLDGKYL 259 (261)
Q Consensus 191 ~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l 259 (261)
.+..|.+ +|.++.|+|++.+ +++||.|+.|+|||+.+.+.-... ..-..++..++|-|+.++.
T Consensus 215 k~~AH~G-pV~c~nwhPnr~~-----lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~h 278 (839)
T KOG0269|consen 215 KLTAHNG-PVLCLNWHPNREW-----LATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYH 278 (839)
T ss_pred HhhcccC-ceEEEeecCCCce-----eeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccch
Confidence 6666654 8999999998888 799999999999999866543222 2234789999999987753
No 109
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.1e-23 Score=152.74 Aligned_cols=220 Identities=11% Similarity=0.154 Sum_probs=172.1
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCcc-
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT- 97 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~- 97 (261)
+.++.+++.|. ....|..+++.+ ...+.+|.+.|++++|++.+.++++++.|++..||...-.-.
T Consensus 160 qpi~gtASADh--------TA~iWs~Esg~C------L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~v 225 (481)
T KOG0300|consen 160 QPICGTASADH--------TARIWSLESGAC------LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEV 225 (481)
T ss_pred Ccceeeccccc--------ceeEEeeccccc------eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcC
Confidence 44666666676 666777777776 567899999999999999999999999999999998321100
Q ss_pred -----c---------------------------cceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCce
Q 024868 98 -----D---------------------------INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR 145 (261)
Q Consensus 98 -----~---------------------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~ 145 (261)
. ..+..+......|...|.+..|-..|+.+++++.|++..+||+++++
T Consensus 226 P~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge 305 (481)
T KOG0300|consen 226 PSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE 305 (481)
T ss_pred CCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc
Confidence 0 00000111222345678888899899999999999999999999999
Q ss_pred EEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCC-cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCc
Q 024868 146 IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA 224 (261)
Q Consensus 146 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~ 224 (261)
.+..+.+|....+.++-+|..+++++++.|.+.++||++.. +.+..|++|.+ .|+++.|.-+.+. +++++|.
T Consensus 306 ~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtd-tVTS~vF~~dd~v------VSgSDDr 378 (481)
T KOG0300|consen 306 VVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTD-TVTSVVFNTDDRV------VSGSDDR 378 (481)
T ss_pred eeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccccc-ceeEEEEecCCce------eecCCCc
Confidence 99888888889999999999999999999999999999843 45677888877 4999999998884 9999999
Q ss_pred EEEEEECCCCe-EEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 225 LLAVYDISTWN-KIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 225 ~i~~~d~~~~~-~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
+|++||+++.. ++.++. ...++..++.+..+..+|
T Consensus 379 TvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIA 414 (481)
T KOG0300|consen 379 TVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIA 414 (481)
T ss_pred eEEEeeeccccCcceeee-cCCccceeEeecCCceEE
Confidence 99999998765 344443 345667777776666655
No 110
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=2.7e-23 Score=167.93 Aligned_cols=211 Identities=14% Similarity=0.213 Sum_probs=172.7
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEee-ecCCCCCceEEEECCCCCeEEEEec
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYV-FDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
..+.|..|.. ..+..|..+. .|..|+..++.. ... +.+|.+.|.++++..-+.+|++|+.
T Consensus 209 ~~~~~~q~~~-----~~~~~~s~~~--------tl~~~~~~~~~~------i~~~l~GH~g~V~~l~~~~~~~~lvsgS~ 269 (537)
T KOG0274|consen 209 HVVLCLQLHD-----GFFKSGSDDS--------TLHLWDLNNGYL------ILTRLVGHFGGVWGLAFPSGGDKLVSGST 269 (537)
T ss_pred chhhhheeec-----CeEEecCCCc--------eeEEeecccceE------EEeeccCCCCCceeEEEecCCCEEEEEec
Confidence 3455566663 2677888877 788899888765 444 8999999999999877889999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
|.++++||..++.+...+ ..|.+.+.++... ...+++|+.|.+|++|++.++..+..+.+|..+|.++..+
T Consensus 270 D~t~rvWd~~sg~C~~~l-------~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~ 340 (537)
T KOG0274|consen 270 DKTERVWDCSTGECTHSL-------QGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD 340 (537)
T ss_pred CCcEEeEecCCCcEEEEe-------cCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec
Confidence 999999999998872221 2355667776554 4577888999999999999999887777788899999998
Q ss_pred CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC-eEEeeeec
Q 024868 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-NKIGHKRL 242 (261)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~~ 242 (261)
+.++++|+.|+.|++||..++++++.+.+|.. .|.++.+.+. .. +++++.|+.|++||+++. +++..+..
T Consensus 341 --~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~-~V~sl~~~~~-~~-----~~Sgs~D~~IkvWdl~~~~~c~~tl~~ 411 (537)
T KOG0274|consen 341 --EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG-RVYSLIVDSE-NR-----LLSGSLDTTIKVWDLRTKRKCIHTLQG 411 (537)
T ss_pred --CCEEEEEecCceEEEEEhhhceeeeeecCCcc-eEEEEEecCc-ce-----EEeeeeccceEeecCCchhhhhhhhcC
Confidence 88999999999999999999999999999776 6999977665 55 689999999999999999 88888888
Q ss_pred cCcCeeEEEE
Q 024868 243 LRKPASVLSI 252 (261)
Q Consensus 243 ~~~~v~~~~~ 252 (261)
|..-+..+.+
T Consensus 412 h~~~v~~l~~ 421 (537)
T KOG0274|consen 412 HTSLVSSLLL 421 (537)
T ss_pred Cccccccccc
Confidence 8777755543
No 111
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=6.6e-23 Score=154.84 Aligned_cols=231 Identities=15% Similarity=0.160 Sum_probs=183.3
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCcee----cC---------CeEEeeecCCCCCceEE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY----TS---------PLVTYVFDESEGDPMTI 69 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~----~~---------~~~~~~~~~~~~~v~~~ 69 (261)
..-+|+|+++.|+ ..++..++.++ .|..|+..++.-. .. +..... +.|...+.++
T Consensus 141 H~~s~~~vals~d---~~~~fsask~g--------~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~ 208 (479)
T KOG0299|consen 141 HQLSVTSVALSPD---DKRVFSASKDG--------TILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTL 208 (479)
T ss_pred ccCcceEEEeecc---ccceeecCCCc--------ceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeEEE
Confidence 3568999999996 55788888888 8888887655421 11 111111 3788899999
Q ss_pred EECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCC-CCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEe
Q 024868 70 AVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP-LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL 148 (261)
Q Consensus 70 ~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~ 148 (261)
+.++||++|++|+.|..|.||+.++... ... ..|.+.|.+++|-.....+++++.|+.+++|+++....+.
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t~eh--------v~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve 280 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDTLEH--------VKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVE 280 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCcccch--------hhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHH
Confidence 9999999999999999999999998875 333 4567899999999888899999999999999999988888
Q ss_pred eccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEE
Q 024868 149 DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAV 228 (261)
Q Consensus 149 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~ 228 (261)
.+++|++.|.++....-++.+-+|+.|+++++|++.... ...+.++.. .+.+++|-.+..+ ++|+++|.|.+
T Consensus 281 tlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlifrg~~~-sidcv~~In~~Hf------vsGSdnG~IaL 352 (479)
T KOG0299|consen 281 TLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIFRGGEG-SIDCVAFINDEHF------VSGSDNGSIAL 352 (479)
T ss_pred HHhCCccceeeechhcccceEEeccccceeEEEeccccc-eeeeeCCCC-CeeeEEEecccce------eeccCCceEEE
Confidence 899999999999988888888888899999999995333 234444444 5999999877764 99999999999
Q ss_pred EECCCCeEEeeee-ccC-----------cCeeEEEEeeCCCEEeC
Q 024868 229 YDISTWNKIGHKR-LLR-----------KPASVLSISLDGKYLAM 261 (261)
Q Consensus 229 ~d~~~~~~~~~~~-~~~-----------~~v~~~~~s~dg~~la~ 261 (261)
|++.+.+++.... .|+ ..|++++..|...++|+
T Consensus 353 Ws~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~as 397 (479)
T KOG0299|consen 353 WSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLAS 397 (479)
T ss_pred eeecccCceeEeeccccccCCccccccccceeeeEecccCceEEe
Confidence 9999888775443 221 26888999888887764
No 112
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=3.3e-23 Score=166.74 Aligned_cols=237 Identities=16% Similarity=0.203 Sum_probs=185.3
Q ss_pred ceeeEEEEEeeCCc--ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 5 GTVTCGSWIKRPEN--VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 5 ~~v~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
.||..+++...++. .+.+++--++. ..+.|+..+.....-.+....++.....+++++.++.|++.+.|.
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~--------~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~ 467 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKR--------SAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGY 467 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcc--------eEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEec
Confidence 46666666544322 35555544445 777777766554222222222333446789999999999999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 162 (261)
..|.|-+|+++++-..... .....|.++|++++...-++.+++++.+|.+.+||..+...+.. ..-...+..+..
T Consensus 468 S~G~Id~fNmQSGi~r~sf----~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~-l~l~~~~~~iv~ 542 (910)
T KOG1539|consen 468 SKGTIDRFNMQSGIHRKSF----GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKS-LRLGSSITGIVY 542 (910)
T ss_pred cCCeEEEEEcccCeeeccc----ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeee-eccCCCcceeee
Confidence 9999999999988642221 12335789999999998899999999999999999987765433 334456788888
Q ss_pred cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (261)
Q Consensus 163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~ 242 (261)
+.....++.+.+|-.|+++|..+.+.++.+.+|.+ .+++++|||||++ +++++.|++|++||+.++..+..+.
T Consensus 543 hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n-ritd~~FS~DgrW-----lisasmD~tIr~wDlpt~~lID~~~- 615 (910)
T KOG1539|consen 543 HRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGN-RITDMTFSPDGRW-----LISASMDSTIRTWDLPTGTLIDGLL- 615 (910)
T ss_pred eehhhhhhhhcCceeEEEEEchhhhhhHHhhcccc-ceeeeEeCCCCcE-----EEEeecCCcEEEEeccCcceeeeEe-
Confidence 88888999999999999999999999999998877 5999999999999 7999999999999999999886544
Q ss_pred cCcCeeEEEEeeCCCEEeC
Q 024868 243 LRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 243 ~~~~v~~~~~s~dg~~la~ 261 (261)
...++.++.|||+|.+||+
T Consensus 616 vd~~~~sls~SPngD~LAT 634 (910)
T KOG1539|consen 616 VDSPCTSLSFSPNGDFLAT 634 (910)
T ss_pred cCCcceeeEECCCCCEEEE
Confidence 4578899999999999985
No 113
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=8.2e-23 Score=150.97 Aligned_cols=170 Identities=17% Similarity=0.290 Sum_probs=137.6
Q ss_pred eEEeeecCCCCCceEEEECCC-CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC-CcEEEEec
Q 024868 54 LVTYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGG 131 (261)
Q Consensus 54 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~ 131 (261)
...+.+.+|.+.=+.++|||- -..|++|.--+.|++|...++.-... ......|...|..++|||. ...|++|+
T Consensus 202 ~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd----~~Pf~gH~~SVEDLqWSptE~~vfaScS 277 (440)
T KOG0302|consen 202 RPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD----QRPFTGHTKSVEDLQWSPTEDGVFASCS 277 (440)
T ss_pred CceEEecccCccceeeecccccccccccCccccceEeeeeccCceeec----CccccccccchhhhccCCccCceEEeee
Confidence 345678889999999999992 22477887778899999988653221 2344557889999999994 56889999
Q ss_pred cCCeEEEEEccCce--EEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccC---CcEEEEEeecCCCceEEEEEe
Q 024868 132 VDGHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED---GVAWTFLTRNSDEKIELCRFS 206 (261)
Q Consensus 132 ~d~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~ 206 (261)
.||+|+|||++.+. .......|.+.|..++|+.+..+||+|++||.++|||+++ ++++..++.|.. +|+++.|+
T Consensus 278 ~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~-pItsieW~ 356 (440)
T KOG0302|consen 278 CDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA-PITSIEWH 356 (440)
T ss_pred cCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC-CeeEEEec
Confidence 99999999999873 2234467777899999999888999999999999999985 678888987765 79999999
Q ss_pred cCCCcceEEEEEeeCCCcEEEEEECC
Q 024868 207 KDGTKPFLFCTVQRGDKALLAVYDIS 232 (261)
Q Consensus 207 p~~~~~~~~~~~~~~~d~~i~~~d~~ 232 (261)
|..... +++++.|.+|.+||+.
T Consensus 357 p~e~s~----iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 357 PHEDSV----IAASGEDNQITIWDLS 378 (440)
T ss_pred cccCce----EEeccCCCcEEEEEee
Confidence 987663 5788899999999985
No 114
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.2e-22 Score=165.06 Aligned_cols=225 Identities=21% Similarity=0.244 Sum_probs=176.6
Q ss_pred eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCc
Q 024868 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (261)
Q Consensus 7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 86 (261)
-+.++|.|+. ..+.+++.++ .|..|+..... ..|. .+..+...|.+++. ++..|++++.+++
T Consensus 16 ~t~i~~d~~g---efi~tcgsdg--------~ir~~~~~sd~--e~P~---ti~~~g~~v~~ia~--~s~~f~~~s~~~t 77 (933)
T KOG1274|consen 16 LTLICYDPDG---EFICTCGSDG--------DIRKWKTNSDE--EEPE---TIDISGELVSSIAC--YSNHFLTGSEQNT 77 (933)
T ss_pred eEEEEEcCCC---CEEEEecCCC--------ceEEeecCCcc--cCCc---hhhccCceeEEEee--cccceEEeeccce
Confidence 5678898874 4788888888 77777665441 0111 12226677777776 4558999999999
Q ss_pred EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCC
Q 024868 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS 166 (261)
Q Consensus 87 i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 166 (261)
|.+|.+..+.....+ . .-.-++++++|+.+|+++|.|+.|-.|++.++.+......+.+|..+|.++.|+|.+
T Consensus 78 v~~y~fps~~~~~iL-~------Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~ 150 (933)
T KOG1274|consen 78 VLRYKFPSGEEDTIL-A------RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKG 150 (933)
T ss_pred EEEeeCCCCCcccee-e------eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCC
Confidence 999999887752111 1 113578999999999999999999999999999888888889999999999999999
Q ss_pred CEEEEecCCCcEEEEEccCCcEEEEEeecC-------CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868 167 EFLATTSTDGSARIWKTEDGVAWTFLTRNS-------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (261)
Q Consensus 167 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~ 239 (261)
++||+.+.||.|++||+.++.+..++..-. ...+..++|+|+|.. ++....|+.|++|+..+++....
T Consensus 151 ~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~-----la~~~~d~~Vkvy~r~~we~~f~ 225 (933)
T KOG1274|consen 151 NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT-----LAVPPVDNTVKVYSRKGWELQFK 225 (933)
T ss_pred CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe-----EEeeccCCeEEEEccCCceehee
Confidence 999999999999999999988777664321 234678999999776 46677789999999999998765
Q ss_pred eec--cCcCeeEEEEeeCCCEEeC
Q 024868 240 KRL--LRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 240 ~~~--~~~~v~~~~~s~dg~~la~ 261 (261)
+.. +...+..++|+|+|+|||.
T Consensus 226 Lr~~~~ss~~~~~~wsPnG~YiAA 249 (933)
T KOG1274|consen 226 LRDKLSSSKFSDLQWSPNGKYIAA 249 (933)
T ss_pred ecccccccceEEEEEcCCCcEEee
Confidence 543 3345899999999999984
No 115
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4e-22 Score=157.15 Aligned_cols=226 Identities=14% Similarity=0.178 Sum_probs=179.5
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCC-CCCceEEEECCCCCeEEEEec
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-EGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~ 83 (261)
.+|.|+|++.+ .+.+|++..+| .|-.|++...- .....+.++ ...|.+++|++ +.+|++.+.
T Consensus 26 s~I~slA~s~k---S~~lAvsRt~g--------~IEiwN~~~~w-----~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~ 88 (691)
T KOG2048|consen 26 SEIVSLAYSHK---SNQLAVSRTDG--------NIEIWNLSNNW-----FLEPVIHGPEDRSIESLAWAE-GGRLFSSGL 88 (691)
T ss_pred cceEEEEEecc---CCceeeeccCC--------cEEEEccCCCc-----eeeEEEecCCCCceeeEEEcc-CCeEEeecC
Confidence 46888999885 45689998888 77777776643 234445555 45799999994 556888889
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee--ccccCCceeEEE
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD--EPKAHKSVLDMD 161 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~~~v~~~~ 161 (261)
+|.|.-||+.+.+.... .-...+.|.+++.+|.+..++.|+.||.+..++...++.... +....+.+.+++
T Consensus 89 sg~i~EwDl~~lk~~~~-------~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsls 161 (691)
T KOG2048|consen 89 SGSITEWDLHTLKQKYN-------IDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLS 161 (691)
T ss_pred CceEEEEecccCceeEE-------ecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEE
Confidence 99999999998775221 122357899999999999999999999888888877765432 334456899999
Q ss_pred EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeec-------CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN-------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (261)
Q Consensus 162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~ 234 (261)
|+|++..++.|+.||.|++||..+++.+.....+ ...-|+++.|-.++. +++|...|+|.+||...+
T Consensus 162 w~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t------I~sgDS~G~V~FWd~~~g 235 (691)
T KOG2048|consen 162 WNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST------IASGDSAGTVTFWDSIFG 235 (691)
T ss_pred ecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc------EEEecCCceEEEEcccCc
Confidence 9999999999999999999999998876632211 223478888888887 489999999999999999
Q ss_pred eEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 235 NKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 235 ~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
.+++....|.+.|.+++.++++.++.
T Consensus 236 TLiqS~~~h~adVl~Lav~~~~d~vf 261 (691)
T KOG2048|consen 236 TLIQSHSCHDADVLALAVADNEDRVF 261 (691)
T ss_pred chhhhhhhhhcceeEEEEcCCCCeEE
Confidence 99988999999999999999987764
No 116
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4e-23 Score=155.37 Aligned_cols=230 Identities=13% Similarity=0.152 Sum_probs=168.1
Q ss_pred eeEEEEEee----CCcceEEEEecCCCCCCCCCceEEEEEcCC--CCceecC-------------CeEEeeecCCCCCce
Q 024868 7 VTCGSWIKR----PENVNLVVLGKSSRASSSPSVLEIFSFDPK--TTSVYTS-------------PLVTYVFDESEGDPM 67 (261)
Q Consensus 7 v~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~~~~-------------~~~~~~~~~~~~~v~ 67 (261)
-.|++|..- .+..+++|+|.-+. .|-+||++ ...++.. ........+|++.|.
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp--------~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl 247 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDP--------EIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVL 247 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCc--------eeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHH
Confidence 357888433 24578999999988 55555553 3222110 011223447999999
Q ss_pred EEEECCC-CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCC-CCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCc
Q 024868 68 TIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSL 144 (261)
Q Consensus 68 ~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~ 144 (261)
+++|+.+ .+.||+|+.|.+|++||+.++++ ...+. |.+.|.++.|+| ....|++|+.|+++.+.|.+..
T Consensus 248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p--------~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKP--------KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred HHHhccccceeEEecCCCceEEEEEcCCCCc--------ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 9999874 56789999999999999999986 33333 568999999999 5788999999999999999864
Q ss_pred eEEeeccccCCceeEEEEcCCC-CEEEEecCCCcEEEEEccC-CcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCC
Q 024868 145 RIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD 222 (261)
Q Consensus 145 ~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~ 222 (261)
..........+.|..+.|.|.. ..+++++.||.++-+|+++ ++++.++..|.. +|.++++++.-..+ +++++.
T Consensus 320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~----l~t~s~ 394 (463)
T KOG0270|consen 320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGL----LSTAST 394 (463)
T ss_pred cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcc----eeeccc
Confidence 4433444556789999999954 5677788999999999996 489999998876 69999999988774 688999
Q ss_pred CcEEEEEECCCCeE--EeeeeccCcCeeEEEEeeCCC
Q 024868 223 KALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGK 257 (261)
Q Consensus 223 d~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~s~dg~ 257 (261)
|+.+++|++..... +......-+...|+++.|+-.
T Consensus 395 d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a 431 (463)
T KOG0270|consen 395 DKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVA 431 (463)
T ss_pred cceEEEEeecCCCCcccccccccccceeecccCCCcc
Confidence 99999999875433 211111113355666666543
No 117
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=2.9e-24 Score=157.87 Aligned_cols=220 Identities=14% Similarity=0.160 Sum_probs=176.8
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
.-|+|+|=+|. ....+++|+.|| .+..||.....+ ...+..|.+.|..+++.. ..+++++.|
T Consensus 67 dGV~~lakhp~--~ls~~aSGs~DG--------~VkiWnlsqR~~------~~~f~AH~G~V~Gi~v~~--~~~~tvgdD 128 (433)
T KOG0268|consen 67 DGVSCLAKHPN--KLSTVASGSCDG--------EVKIWNLSQREC------IRTFKAHEGLVRGICVTQ--TSFFTVGDD 128 (433)
T ss_pred cccchhhcCcc--hhhhhhccccCc--------eEEEEehhhhhh------hheeecccCceeeEEecc--cceEEecCC
Confidence 35778777775 357899999999 888899877665 567899999999999987 568888999
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcC
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL 164 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~ 164 (261)
.+|+.|.++... ...+.....+..+.-+..+..+++++. .|.|||.....++..+.-....|.++.|+|
T Consensus 129 KtvK~wk~~~~p---------~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNp 197 (433)
T KOG0268|consen 129 KTVKQWKIDGPP---------LHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNP 197 (433)
T ss_pred cceeeeeccCCc---------ceeeeccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCC
Confidence 999999988742 444445566777777766777888754 499999988878777776677899999999
Q ss_pred CCC-EEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe-EEeeeec
Q 024868 165 DSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRL 242 (261)
Q Consensus 165 ~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~ 242 (261)
... .|+++..|+.|.+||++++.+++.+.... ..+.++|+|.+-. ..++.+|..++.||++..+ ++.....
T Consensus 198 vETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m--RTN~IswnPeafn-----F~~a~ED~nlY~~DmR~l~~p~~v~~d 270 (433)
T KOG0268|consen 198 VETSILASCASDRSIVLYDLRQASPLKKVILTM--RTNTICWNPEAFN-----FVAANEDHNLYTYDMRNLSRPLNVHKD 270 (433)
T ss_pred CcchheeeeccCCceEEEecccCCccceeeeec--cccceecCccccc-----eeeccccccceehhhhhhcccchhhcc
Confidence 655 66777799999999999999998877543 4788999994443 4788999999999998755 4566778
Q ss_pred cCcCeeEEEEeeCCCEEe
Q 024868 243 LRKPASVLSISLDGKYLA 260 (261)
Q Consensus 243 ~~~~v~~~~~s~dg~~la 260 (261)
|.+.|.++.|||.|+-++
T Consensus 271 hvsAV~dVdfsptG~Efv 288 (433)
T KOG0268|consen 271 HVSAVMDVDFSPTGQEFV 288 (433)
T ss_pred cceeEEEeccCCCcchhc
Confidence 889999999999998765
No 118
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=2.4e-21 Score=149.43 Aligned_cols=211 Identities=17% Similarity=0.197 Sum_probs=151.4
Q ss_pred eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeE-EEEecCCcEEEEEEeCCccc
Q 024868 20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVYGGATD 98 (261)
Q Consensus 20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~~~~~~~~~ 98 (261)
+++++++.++ .+..||..+.+. ...+..+ ..+.+++|+|+++.+ +++..++.+++||..+++..
T Consensus 2 ~~~~s~~~d~--------~v~~~d~~t~~~------~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~ 66 (300)
T TIGR03866 2 KAYVSNEKDN--------TISVIDTATLEV------TRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI 66 (300)
T ss_pred cEEEEecCCC--------EEEEEECCCCce------EEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence 4678888888 889999877653 3344444 346789999999976 55667899999999876531
Q ss_pred cceeeeeCCCCCCCCCeEEEEEeeCCcEEEEe-ccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCC-
Q 024868 99 INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG- 176 (261)
Q Consensus 99 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~- 176 (261)
. .+.....+..++|+|+++.++++ ..++.+++||+.+.+.+..+. ....+.+++|+|+|+++++++.++
T Consensus 67 ~--------~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~ 137 (300)
T TIGR03866 67 G--------TLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTN 137 (300)
T ss_pred E--------eccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-CCCCcceEEECCCCCEEEEEecCCC
Confidence 1 11122335678999999877655 468999999998876654443 233568899999999999888765
Q ss_pred cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccC-------cCeeE
Q 024868 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-------KPASV 249 (261)
Q Consensus 177 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~-------~~v~~ 249 (261)
.+.+||.++++......... .+..++|+|+++++ ++++..++.|++||+++++.+..+..+. .....
T Consensus 138 ~~~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l----~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (300)
T TIGR03866 138 MAHFIDTKTYEIVDNVLVDQ--RPRFAEFTADGKEL----WVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVG 211 (300)
T ss_pred eEEEEeCCCCeEEEEEEcCC--CccEEEECCCCCEE----EEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccc
Confidence 57788998887766554322 36789999999973 2455568999999999988765543221 12346
Q ss_pred EEEeeCCCEEe
Q 024868 250 LSISLDGKYLA 260 (261)
Q Consensus 250 ~~~s~dg~~la 260 (261)
++|+|||++++
T Consensus 212 i~~s~dg~~~~ 222 (300)
T TIGR03866 212 IKLTKDGKTAF 222 (300)
T ss_pred eEECCCCCEEE
Confidence 88999999743
No 119
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1e-22 Score=152.42 Aligned_cols=141 Identities=35% Similarity=0.534 Sum_probs=118.2
Q ss_pred CeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEe
Q 024868 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT 193 (261)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 193 (261)
.-..++|+++|..+++++.||++++|+..+...+.....|+..|.++.|+|||++|++.+.| ..+||+.+++.++....
T Consensus 146 ~~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 146 QQKVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred cceEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 33789999999999999999999999998888888888999999999999999999999999 89999998772211110
Q ss_pred ----------------------------e-------------cC------------CCceEEEEEecCCCcceEEEEEee
Q 024868 194 ----------------------------R-------------NS------------DEKIELCRFSKDGTKPFLFCTVQR 220 (261)
Q Consensus 194 ----------------------------~-------------~~------------~~~v~~~~~~p~~~~~~~~~~~~~ 220 (261)
. +. ...+.+++.+++|++ ++.+
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf-----~AlG 299 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF-----LALG 299 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE-----EEEe
Confidence 0 00 114889999999998 7889
Q ss_pred CCCcEEEEEECCCCeEEeee-eccCcCeeEEEEeeCCCEEe
Q 024868 221 GDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 221 ~~d~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~s~dg~~la 260 (261)
+.||.|.+++..+.+.++.. ..|...|+.+.|+||.++++
T Consensus 300 T~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~ 340 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLA 340 (398)
T ss_pred ccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccc
Confidence 99999999999988876544 46888999999999999876
No 120
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.4e-23 Score=174.02 Aligned_cols=236 Identities=14% Similarity=0.168 Sum_probs=180.3
Q ss_pred CceeeEEEEEeeCCc-ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC-CCeEEEE
Q 024868 4 GGTVTCGSWIKRPEN-VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCS 81 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~ 81 (261)
..+-++++|.+.... .-+||.|..|| .|-.||+....-............|++.|..++|++. ++.||+|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG--------~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASG 135 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDG--------NIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASG 135 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCC--------ceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeecc
Confidence 456788999775422 23688888888 7888887653111112223456789999999999995 4599999
Q ss_pred ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeeccccCC--cee
Q 024868 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK--SVL 158 (261)
Q Consensus 82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~v~ 158 (261)
+.+|.|.|||+...+...... .....+.|.+++|+. ..+.|++++.+|.+.|||++..+.+..+..+.. .+.
T Consensus 136 a~~geI~iWDlnn~~tP~~~~-----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S 210 (1049)
T KOG0307|consen 136 ADDGEILIWDLNKPETPFTPG-----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCS 210 (1049)
T ss_pred CCCCcEEEeccCCcCCCCCCC-----CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcccee
Confidence 999999999998755322211 222357899999998 456788888999999999998887766655544 478
Q ss_pred EEEEcCCC-CEEEEecCCC---cEEEEEccC-CcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868 159 DMDFSLDS-EFLATTSTDG---SARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (261)
Q Consensus 159 ~~~~s~~~-~~l~~~~~d~---~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~ 233 (261)
.+.|+|+. ..+++++.|. .|.+||++. ..+++++..|.. .|.++.|++.+..+ +++++.|+.|.+|+.++
T Consensus 211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~l----llSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 211 VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRL----LLSSGKDNRIICWNPNT 285 (1049)
T ss_pred eeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchh----hhcccCCCCeeEecCCC
Confidence 99999975 3566666553 699999985 456777777766 49999999988553 68999999999999999
Q ss_pred CeEEeeeeccCcCeeEEEEeeCCC
Q 024868 234 WNKIGHKRLLRKPASVLSISLDGK 257 (261)
Q Consensus 234 ~~~~~~~~~~~~~v~~~~~s~dg~ 257 (261)
++.+..+...+..+..+.|+|..-
T Consensus 286 gEvl~~~p~~~nW~fdv~w~pr~P 309 (1049)
T KOG0307|consen 286 GEVLGELPAQGNWCFDVQWCPRNP 309 (1049)
T ss_pred ceEeeecCCCCcceeeeeecCCCc
Confidence 999998888888999999999765
No 121
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=6.5e-22 Score=143.07 Aligned_cols=189 Identities=16% Similarity=0.255 Sum_probs=148.6
Q ss_pred eecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc--CCe
Q 024868 58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGH 135 (261)
Q Consensus 58 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~ 135 (261)
.++...+.|.++.|+++|..+++++.|.++++||..++.....+. .++-.+..++|-.....++.++. |.+
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~-------skkyG~~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN-------SKKYGVDLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee-------cccccccEEEEecCCceEEEccCCCCCc
Confidence 455567889999999999999999999999999999887622211 12345677788776666666664 889
Q ss_pred EEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEE
Q 024868 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (261)
Q Consensus 136 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~ 215 (261)
|+..++.+.+.++.+.+|...|.+++.+|-+..+++++.|++|++||++..++...+.... -..++|+|+|-.
T Consensus 82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~---~pi~AfDp~GLi---- 154 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG---RPIAAFDPEGLI---- 154 (311)
T ss_pred eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC---CcceeECCCCcE----
Confidence 9999999999999999999999999999999999999999999999999888776665332 335789999976
Q ss_pred EEEeeCCCcEEEEEECCCCe--EEeeeec---cCcCeeEEEEeeCCCEEeC
Q 024868 216 CTVQRGDKALLAVYDISTWN--KIGHKRL---LRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 216 ~~~~~~~d~~i~~~d~~~~~--~~~~~~~---~~~~v~~~~~s~dg~~la~ 261 (261)
++.+.....|++||++... +...+.. .......+.|||||++|++
T Consensus 155 -fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLl 204 (311)
T KOG1446|consen 155 -FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILL 204 (311)
T ss_pred -EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEE
Confidence 3555555599999998652 3333332 2467889999999999863
No 122
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.8e-22 Score=162.19 Aligned_cols=221 Identities=12% Similarity=0.160 Sum_probs=170.1
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
+.+|++++-.. +.+++|+.++ .+..|....... .-.+...+-++.+++|+-+|+++|.|+.
T Consensus 56 g~~v~~ia~~s-----~~f~~~s~~~--------tv~~y~fps~~~------~~iL~Rftlp~r~~~v~g~g~~iaagsd 116 (933)
T KOG1274|consen 56 GELVSSIACYS-----NHFLTGSEQN--------TVLRYKFPSGEE------DTILARFTLPIRDLAVSGSGKMIAAGSD 116 (933)
T ss_pred CceeEEEeecc-----cceEEeeccc--------eEEEeeCCCCCc------cceeeeeeccceEEEEecCCcEEEeecC
Confidence 45566666543 3777887777 555555544432 1123344567999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecccc--------CC
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA--------HK 155 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--------~~ 155 (261)
|-.|++.+..+... ......|.++|.++.|+|++.+||+.+.||.|++||+.++.....+..- ..
T Consensus 117 D~~vK~~~~~D~s~-------~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~ 189 (933)
T KOG1274|consen 117 DTAVKLLNLDDSSQ-------EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSR 189 (933)
T ss_pred ceeEEEEeccccch-------heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccc
Confidence 99999999988764 2334456799999999999999999999999999999887654333211 12
Q ss_pred ceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCC-ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868 156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE-KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (261)
Q Consensus 156 ~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~ 234 (261)
.+..++|+|+|..++..+.|+.|++|+..+++....+...... .+..+.|+|.|+| +++++.+|.|.|||.++.
T Consensus 190 i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y-----iAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 190 ICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY-----IAASTLDGQILVWNVDTH 264 (933)
T ss_pred eeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE-----EeeeccCCcEEEEecccc
Confidence 4678999999888888888999999999999988877654332 3889999999999 799999999999999883
Q ss_pred eEEeeeeccCcCeeEEEEeeCCCEE
Q 024868 235 NKIGHKRLLRKPASVLSISLDGKYL 259 (261)
Q Consensus 235 ~~~~~~~~~~~~v~~~~~s~dg~~l 259 (261)
+. ......|++++|.|++.-+
T Consensus 265 ~~----~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 265 ER----HEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred hh----ccccceeEEEecCCCCCee
Confidence 22 3344688999999987654
No 123
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.4e-22 Score=141.68 Aligned_cols=207 Identities=14% Similarity=0.217 Sum_probs=160.1
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC--CCeEEEE
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVCS 81 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~ 81 (261)
+|||..++|.. |....++|+++.|+ ++.+|...++.+. ..+....|...|++++|.|. |-.|+++
T Consensus 56 ~GPVwqv~wah-Pk~G~iLAScsYDg--------kVIiWke~~g~w~----k~~e~~~h~~SVNsV~wapheygl~Laca 122 (299)
T KOG1332|consen 56 SGPVWKVAWAH-PKFGTILASCSYDG--------KVIIWKEENGRWT----KAYEHAAHSASVNSVAWAPHEYGLLLACA 122 (299)
T ss_pred CCCeeEEeecc-cccCcEeeEeecCc--------eEEEEecCCCchh----hhhhhhhhcccceeecccccccceEEEEe
Confidence 79999999953 22588999999999 9999988887762 24567789999999999984 6788999
Q ss_pred ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC---C-----------cEEEEeccCCeEEEEEccCce--
Q 024868 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---G-----------SRFAAGGVDGHLRIMHWPSLR-- 145 (261)
Q Consensus 82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~-----------~~l~~~~~d~~i~~~d~~~~~-- 145 (261)
+.||.|.+.+.+..... ........|.-.|+++.|.|- | +.|++|+.|..|++|+..++.
T Consensus 123 sSDG~vsvl~~~~~g~w----~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~ 198 (299)
T KOG1332|consen 123 SSDGKVSVLTYDSSGGW----TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK 198 (299)
T ss_pred eCCCcEEEEEEcCCCCc----cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchh
Confidence 99999999999876221 111223345677899999985 4 569999999999999988753
Q ss_pred EEeeccccCCceeEEEEcCCC----CEEEEecCCCcEEEEEccCC--cEEEEEeecCCCceEEEEEecCCCcceEEEEEe
Q 024868 146 IILDEPKAHKSVLDMDFSLDS----EFLATTSTDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (261)
Q Consensus 146 ~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 219 (261)
....+..|.+.|+.++|.|.- ..||+++.||.+.||..+.. +...++.......++.+.||+.|.. ++.
T Consensus 199 ~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~-----LaV 273 (299)
T KOG1332|consen 199 LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNI-----LAV 273 (299)
T ss_pred hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccE-----EEE
Confidence 223356777889999999953 47999999999999987632 1222232233456999999999998 688
Q ss_pred eCCCcEEEEEECC
Q 024868 220 RGDKALLAVYDIS 232 (261)
Q Consensus 220 ~~~d~~i~~~d~~ 232 (261)
++.|+.+.+|.-.
T Consensus 274 s~GdNkvtlwke~ 286 (299)
T KOG1332|consen 274 SGGDNKVTLWKEN 286 (299)
T ss_pred ecCCcEEEEEEeC
Confidence 8889999999854
No 124
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=2.5e-22 Score=144.27 Aligned_cols=211 Identities=18% Similarity=0.196 Sum_probs=161.0
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCc------eecCCe---EEeeecCCCCCceEEEECC
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS------VYTSPL---VTYVFDESEGDPMTIAVNP 73 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~---~~~~~~~~~~~v~~~~~~~ 73 (261)
.+|.|..+...+. ...++++|+.+| .+..||.++.. +..... ....-.+|.-.|..+.|-|
T Consensus 42 HgGsvNsL~id~t--egrymlSGgadg--------si~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP 111 (397)
T KOG4283|consen 42 HGGSVNSLQIDLT--EGRYMLSGGADG--------SIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYP 111 (397)
T ss_pred CCCccceeeeccc--cceEEeecCCCc--------cEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEee
Confidence 3566777777665 478999999999 77778876533 111111 1122345777899999999
Q ss_pred -CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC---CcEEEEeccCCeEEEEEccCceEEee
Q 024868 74 -SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGVDGHLRIMHWPSLRIILD 149 (261)
Q Consensus 74 -~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~~~d~~~~~~~~~ 149 (261)
|.-.+.+++.|.++++||..+-+. ...+.-.+.|++-+|||- -.+||+|..+-.|++.|+.+|.....
T Consensus 112 ~DtGmFtssSFDhtlKVWDtnTlQ~--------a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~ 183 (397)
T KOG4283|consen 112 IDTGMFTSSSFDHTLKVWDTNTLQE--------AVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT 183 (397)
T ss_pred ecCceeecccccceEEEeeccccee--------eEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee
Confidence 666788889999999999998765 334444678888899983 34677888888999999999999888
Q ss_pred ccccCCceeEEEEcCCCCE-EEEecCCCcEEEEEccCC-cEEEEEeec-------------CCCceEEEEEecCCCcceE
Q 024868 150 EPKAHKSVLDMDFSLDSEF-LATTSTDGSARIWKTEDG-VAWTFLTRN-------------SDEKIELCRFSKDGTKPFL 214 (261)
Q Consensus 150 ~~~~~~~v~~~~~s~~~~~-l~~~~~d~~i~iwd~~~~-~~~~~~~~~-------------~~~~v~~~~~~p~~~~~~~ 214 (261)
+.+|.+.|.++.|+|...+ |++|+.||.|++||++.. .+...+..| +.+.+.+++|..++.+
T Consensus 184 LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~--- 260 (397)
T KOG4283|consen 184 LSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY--- 260 (397)
T ss_pred eccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh---
Confidence 8999999999999997765 678999999999999853 333333222 2346899999999999
Q ss_pred EEEEeeCCCcEEEEEECCCCeE
Q 024868 215 FCTVQRGDKALLAVYDISTWNK 236 (261)
Q Consensus 215 ~~~~~~~~d~~i~~~d~~~~~~ 236 (261)
+++.+.|..+++|+..+|+.
T Consensus 261 --l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 261 --LASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred --hhhccCccceEEeecccCcc
Confidence 68889999999999988753
No 125
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=1.9e-23 Score=159.79 Aligned_cols=192 Identities=14% Similarity=0.193 Sum_probs=156.6
Q ss_pred cCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEE
Q 024868 60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (261)
Q Consensus 60 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~ 139 (261)
-.|..-|.++.++...+.+.+|+.. .|+|||+..... +.....+..+.....++++.+.|||+.|++|+.-.++.||
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGkg-cVKVWdis~pg~--k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGKG-CVKVWDISQPGN--KSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW 492 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCCC-eEEEeeccCCCC--CCccccccccCcccceeeeEecCCCceEEeccccceeeee
Confidence 3577778899999888889888654 599999976532 2222234445556889999999999999999999999999
Q ss_pred EccCceEEeec--cccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEE
Q 024868 140 HWPSLRIILDE--PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT 217 (261)
Q Consensus 140 d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~ 217 (261)
|+.......+. .......+.++.+||.+..+++..||.|.|||+.+...++.+++|.++ +.|+..++||.. +
T Consensus 493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDG-ascIdis~dGtk-----l 566 (705)
T KOG0639|consen 493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG-ASCIDISKDGTK-----L 566 (705)
T ss_pred eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCC-ceeEEecCCCce-----e
Confidence 99866543222 222235788999999999999999999999999999999999999885 999999999998 7
Q ss_pred EeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 218 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
.+|+-|++|+-||+++++.+.. ......|.++..+|++.+||+
T Consensus 567 WTGGlDntvRcWDlregrqlqq-hdF~SQIfSLg~cP~~dWlav 609 (705)
T KOG0639|consen 567 WTGGLDNTVRCWDLREGRQLQQ-HDFSSQIFSLGYCPTGDWLAV 609 (705)
T ss_pred ecCCCccceeehhhhhhhhhhh-hhhhhhheecccCCCccceee
Confidence 9999999999999999887643 334578899999999999985
No 126
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=3.3e-22 Score=152.88 Aligned_cols=208 Identities=13% Similarity=0.164 Sum_probs=169.8
Q ss_pred eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCcccc
Q 024868 20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI 99 (261)
Q Consensus 20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~ 99 (261)
.++++||..+ .+..||.....+ ...+++|...|+++.++-...+||+++..|.|.|..+.++..
T Consensus 92 ~y~~sgG~~~--------~Vkiwdl~~kl~------hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-- 155 (673)
T KOG4378|consen 92 LYEISGGQSG--------CVKIWDLRAKLI------HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-- 155 (673)
T ss_pred eeeeccCcCc--------eeeehhhHHHHH------hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc--
Confidence 4778888877 777788875544 556889999999999999999999999999999999988765
Q ss_pred ceeeeeCCCCCC--CCCeEEEEEeeCCcE-EEEeccCCeEEEEEccCceEEeeccccC-CceeEEEEcC-CCCEEEEecC
Q 024868 100 NLLAKKMPPLQD--AGPQKCLSFSVDGSR-FAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDMDFSL-DSEFLATTST 174 (261)
Q Consensus 100 ~~~~~~~~~~~~--~~~v~~~~~s~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~s~-~~~~l~~~~~ 174 (261)
...+.+ ...|+-+.|+|..+. |.+++.+|.|.+||+....++......| .+...++|+| +..+|++.+.
T Consensus 156 ------tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~ 229 (673)
T KOG4378|consen 156 ------TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGY 229 (673)
T ss_pred ------ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecc
Confidence 333333 245678999997664 5667899999999998777766665544 4789999999 5567889999
Q ss_pred CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe-EEeeeeccCcCeeEEEEe
Q 024868 175 DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSIS 253 (261)
Q Consensus 175 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~s 253 (261)
|..|.+||....+....+... .|...++|.++|.+ ++.|...|.|..||++..+ ++..+..|...|++++|-
T Consensus 230 Dkki~~yD~~s~~s~~~l~y~--~Plstvaf~~~G~~-----L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq 302 (673)
T KOG4378|consen 230 DKKINIYDIRSQASTDRLTYS--HPLSTVAFSECGTY-----LCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQ 302 (673)
T ss_pred cceEEEeecccccccceeeec--CCcceeeecCCceE-----EEeecCCceEEEEecccCCCCceEeeecccceeEEEee
Confidence 999999999977776666533 36899999999998 7899999999999998654 677788999999999998
Q ss_pred eCC
Q 024868 254 LDG 256 (261)
Q Consensus 254 ~dg 256 (261)
|.-
T Consensus 303 ~s~ 305 (673)
T KOG4378|consen 303 PSP 305 (673)
T ss_pred ecc
Confidence 864
No 127
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=2e-22 Score=148.92 Aligned_cols=201 Identities=13% Similarity=0.229 Sum_probs=144.4
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC-CCeEEEEecC
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCSTTN 84 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d 84 (261)
.=|.++|+|.. ...+++|...+ .|+.|.+.++.+... ...+.+|+..|..++|||. ...|++|+-|
T Consensus 213 EGy~LdWSp~~--~g~LlsGDc~~--------~I~lw~~~~g~W~vd---~~Pf~gH~~SVEDLqWSptE~~vfaScS~D 279 (440)
T KOG0302|consen 213 EGYGLDWSPIK--TGRLLSGDCVK--------GIHLWEPSTGSWKVD---QRPFTGHTKSVEDLQWSPTEDGVFASCSCD 279 (440)
T ss_pred cceeeeccccc--ccccccCcccc--------ceEeeeeccCceeec---CccccccccchhhhccCCccCceEEeeecC
Confidence 34678898842 33455565555 777787777766333 3346679999999999995 5578899999
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC---ceEEeeccccCCceeEEE
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS---LRIILDEPKAHKSVLDMD 161 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~---~~~~~~~~~~~~~v~~~~ 161 (261)
|+|+|||++.+....-. ..-.|.+.|+.+.|+.+-.+||+|+.||+++|||+++ ++++..+.-|..+|+++.
T Consensus 280 gsIrIWDiRs~~~~~~~-----~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsie 354 (440)
T KOG0302|consen 280 GSIRIWDIRSGPKKAAV-----STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIE 354 (440)
T ss_pred ceEEEEEecCCCcccee-----EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEE
Confidence 99999999988532222 1234567899999999878999999999999999986 445566777888999999
Q ss_pred EcCC-CCEEEEecCCCcEEEEEccCCc----------------EEEEEeecC-CCceEEEEEecCCCcceEEEEEeeCCC
Q 024868 162 FSLD-SEFLATTSTDGSARIWKTEDGV----------------AWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDK 223 (261)
Q Consensus 162 ~s~~-~~~l~~~~~d~~i~iwd~~~~~----------------~~~~~~~~~-~~~v~~~~~~p~~~~~~~~~~~~~~~d 223 (261)
|+|. ...|++++.|.+|.|||+.... +.+.+..|. ...+..+.|++.-.-+ +++.+.|
T Consensus 355 W~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~----lvsTa~d 430 (440)
T KOG0302|consen 355 WHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGL----LVSTAID 430 (440)
T ss_pred eccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCe----EEEeccc
Confidence 9994 5578888899999999986211 011111121 1237788899887763 4666677
Q ss_pred cEEEEE
Q 024868 224 ALLAVY 229 (261)
Q Consensus 224 ~~i~~~ 229 (261)
| +.||
T Consensus 431 G-fnVf 435 (440)
T KOG0302|consen 431 G-FNVF 435 (440)
T ss_pred c-eeEE
Confidence 6 4444
No 128
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.90 E-value=2.1e-22 Score=150.09 Aligned_cols=174 Identities=11% Similarity=0.097 Sum_probs=131.1
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCcee-cCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY-TSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
..||+.+.|.+.. .+.+++||+|... ++|..+.....-. ..-.....+..|...|+++.|+|+|+.|++|+
T Consensus 13 ~~pv~s~dfq~n~--~~~laT~G~D~~i------riW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~ 84 (434)
T KOG1009|consen 13 HEPVYSVDFQKNS--LNKLATAGGDKDI------RIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGG 84 (434)
T ss_pred CCceEEEEeccCc--ccceecccCccce------eeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecC
Confidence 5689999998864 4489999888832 5555443221110 11123457889999999999999999999999
Q ss_pred cCCcEEEEEEeCCcc-----c----cceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecccc
Q 024868 83 TNGGCKLFEVYGGAT-----D----INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~-----~----~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 153 (261)
.+|.+.+|....-.. . ............|...+..++|+|++.++++++.|..+++||+..++.......|
T Consensus 85 D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh 164 (434)
T KOG1009|consen 85 DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH 164 (434)
T ss_pred CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc
Confidence 999999998872111 0 0001111122235688999999999999999999999999999999998888888
Q ss_pred CCceeEEEEcCCCCEEEEecCCCcEEEEEccC
Q 024868 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTED 185 (261)
Q Consensus 154 ~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~ 185 (261)
...+..++|.|-++++++-+.|...+.+++..
T Consensus 165 ~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 165 EHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred ccccceeecchhhhhhhhhccCcccceeeeee
Confidence 88999999999999999999888777776653
No 129
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=7.5e-23 Score=152.70 Aligned_cols=226 Identities=15% Similarity=0.154 Sum_probs=178.8
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
.+.|-.+.|-++ ...++.||.|. .|..|+....+. .....+.+..+.|+.++|.++++.+++++.
T Consensus 175 ~gev~~v~~l~~---sdtlatgg~Dr--------~Ik~W~v~~~k~----~~~~tLaGs~g~it~~d~d~~~~~~iAas~ 239 (459)
T KOG0288|consen 175 EGEVHDVEFLRN---SDTLATGGSDR--------IIKLWNVLGEKS----ELISTLAGSLGNITSIDFDSDNKHVIAASN 239 (459)
T ss_pred ccccceeEEccC---cchhhhcchhh--------hhhhhhcccchh----hhhhhhhccCCCcceeeecCCCceEEeecC
Confidence 456777888774 35889999988 555565544432 114567778889999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
|+.+++|++...+.... ...|.+.|+++.|......+++|+.|.++++||+....+..... ..+.+..+..+
T Consensus 240 d~~~r~Wnvd~~r~~~T-------LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~ 311 (459)
T KOG0288|consen 240 DKNLRLWNVDSLRLRHT-------LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS 311 (459)
T ss_pred CCceeeeeccchhhhhh-------hcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec
Confidence 99999999998775221 22367899999998877669999999999999999877755443 33456666665
Q ss_pred CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc
Q 024868 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL 243 (261)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~ 243 (261)
+..++++..|+.|++||.++..+......+. .|+++..++++.. +.+++.|.++.+.|+++.+....+...
T Consensus 312 --~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~-----lLsssRDdtl~viDlRt~eI~~~~sA~ 382 (459)
T KOG0288|consen 312 --ISDVISGHFDKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLE-----LLSSSRDDTLKVIDLRTKEIRQTFSAE 382 (459)
T ss_pred --ceeeeecccccceEEEeccCCceeeEeecCc--ceeeEeeccCCeE-----EeeecCCCceeeeecccccEEEEeecc
Confidence 5668889999999999999999988887554 5999999999998 677799999999999998877666543
Q ss_pred C----cCeeEEEEeeCCCEEeC
Q 024868 244 R----KPASVLSISLDGKYLAM 261 (261)
Q Consensus 244 ~----~~v~~~~~s~dg~~la~ 261 (261)
. ...+.+.|||++.|+|.
T Consensus 383 g~k~asDwtrvvfSpd~~YvaA 404 (459)
T KOG0288|consen 383 GFKCASDWTRVVFSPDGSYVAA 404 (459)
T ss_pred ccccccccceeEECCCCceeee
Confidence 3 45788999999999984
No 130
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=2.5e-21 Score=153.20 Aligned_cols=212 Identities=12% Similarity=0.204 Sum_probs=173.2
Q ss_pred EEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEE
Q 024868 10 GSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKL 89 (261)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 89 (261)
+++.+. +...+++|+.|. .+..|....... ...+.+|...|.+++...++. +++|+.|.++++
T Consensus 64 i~y~e~--~~~~l~~g~~D~--------~i~v~~~~~~~P------~~~LkgH~snVC~ls~~~~~~-~iSgSWD~Takv 126 (745)
T KOG0301|consen 64 ICYAES--DKGRLVVGGMDT--------TIIVFKLSQAEP------LYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKV 126 (745)
T ss_pred ceeccc--cCcceEeecccc--------eEEEEecCCCCc------hhhhhccccceeeeecCCcCc-eEecccccceEE
Confidence 555541 244578888888 777887766553 567999999999999888887 999999999999
Q ss_pred EEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEE
Q 024868 90 FEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFL 169 (261)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 169 (261)
|...... .....|...|..++.-|++ .+++|+.|.+|++|.- ++.+..+.+|.+.|+.+++-+++ .+
T Consensus 127 W~~~~l~---------~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~f 193 (745)
T KOG0301|consen 127 WRIGELV---------YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HF 193 (745)
T ss_pred ecchhhh---------cccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-Ce
Confidence 9986543 2245577899999999988 8889999999999974 66667788888899999998765 47
Q ss_pred EEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeE
Q 024868 170 ATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASV 249 (261)
Q Consensus 170 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~ 249 (261)
++++.||.|++|++ +|+++.++.+|... ++++...+++.. ++++++|+++++|+.. ++.+.+......+++
T Consensus 194 lScsNDg~Ir~w~~-~ge~l~~~~ghtn~-vYsis~~~~~~~-----Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWs 264 (745)
T KOG0301|consen 194 LSCSNDGSIRLWDL-DGEVLLEMHGHTNF-VYSISMALSDGL-----IVSTGEDRTLRIWKKD--ECVQVITLPTTSIWS 264 (745)
T ss_pred EeecCCceEEEEec-cCceeeeeeccceE-EEEEEecCCCCe-----EEEecCCceEEEeecC--ceEEEEecCccceEE
Confidence 88899999999999 78999999988774 999997777776 6999999999999986 666666666678999
Q ss_pred EEEeeCCCEEe
Q 024868 250 LSISLDGKYLA 260 (261)
Q Consensus 250 ~~~s~dg~~la 260 (261)
+.+-++|..++
T Consensus 265 a~~L~NgDIvv 275 (745)
T KOG0301|consen 265 AKVLLNGDIVV 275 (745)
T ss_pred EEEeeCCCEEE
Confidence 99888887653
No 131
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.90 E-value=2.4e-22 Score=149.43 Aligned_cols=199 Identities=12% Similarity=0.094 Sum_probs=155.1
Q ss_pred eecCCCCCceEEEECC-CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC-CcEEEEeccCCe
Q 024868 58 VFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGH 135 (261)
Q Consensus 58 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~ 135 (261)
...+|+++|..++|+| +.+.||+|++|.+|.||++..+.....+.........|...|.-++|+|. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 5679999999999999 66789999999999999998776544443333334456788999999995 467888999999
Q ss_pred EEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEE
Q 024868 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (261)
Q Consensus 136 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~ 215 (261)
|.+|++.+++....+. |...|++++|+.||.+|++.+.|..|+|||.++++.+..-..|.+.....+.|-.+|.. +.
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i--~t 232 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKI--FT 232 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCce--ee
Confidence 9999999999876655 88899999999999999999999999999999999999888888777777889999983 33
Q ss_pred EEEeeCCCcEEEEEECCCCeEEeeee--ccCcCeeEEEEeeCCCEE
Q 024868 216 CTVQRGDKALLAVYDISTWNKIGHKR--LLRKPASVLSISLDGKYL 259 (261)
Q Consensus 216 ~~~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~s~dg~~l 259 (261)
+-++...+.++.+||...-+....+. ...+.|.-.-+.+|.+.|
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~iv 278 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIV 278 (472)
T ss_pred eccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEE
Confidence 34455678899999977544321111 122445555566665544
No 132
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=5.4e-21 Score=146.41 Aligned_cols=226 Identities=16% Similarity=0.224 Sum_probs=170.9
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
.-|.|++|.++. -+++|.++| .|.+|++.+..+ ......|.+.|.++..-.+|..| +|+.|
T Consensus 247 k~Vl~v~F~eng----dviTgDS~G--------~i~Iw~~~~~~~------~k~~~aH~ggv~~L~~lr~Gtll-SGgKD 307 (626)
T KOG2106|consen 247 KFVLCVTFLENG----DVITGDSGG--------NILIWSKGTNRI------SKQVHAHDGGVFSLCMLRDGTLL-SGGKD 307 (626)
T ss_pred eEEEEEEEcCCC----CEEeecCCc--------eEEEEeCCCceE------EeEeeecCCceEEEEEecCccEe-ecCcc
Confidence 568999999854 588999999 999999977765 33333899999999999999755 59999
Q ss_pred CcEEEEEEeCCcccc-c--------------------------eeee------eCCCCCCCCCeEEEEEeeCCcEEEEec
Q 024868 85 GGCKLFEVYGGATDI-N--------------------------LLAK------KMPPLQDAGPQKCLSFSVDGSRFAAGG 131 (261)
Q Consensus 85 g~i~i~~~~~~~~~~-~--------------------------~~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~ 131 (261)
+.|..||-.-.+... . ++.. .+..+.|......++..|+..++++++
T Consensus 308 Rki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~g 387 (626)
T KOG2106|consen 308 RKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCG 387 (626)
T ss_pred ceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeecc
Confidence 999999943221100 0 0000 011122345677888999999999999
Q ss_pred cCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868 132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (261)
Q Consensus 132 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 211 (261)
.|+.+++|+ ..+.+... .-..++.++.|+|.| .+|.|+..|...+.|.++...+..-. . +.+++.++|+|+|.+
T Consensus 388 qdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d-~~~ls~v~ysp~G~~ 461 (626)
T KOG2106|consen 388 QDKHVRLWN--DHKLEWTK-IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-D-NEQLSVVRYSPDGAF 461 (626)
T ss_pred CcceEEEcc--CCceeEEE-EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-c-CCceEEEEEcCCCCE
Confidence 999999999 44443332 234678999999999 99999999999999999865554444 3 557999999999998
Q ss_pred ceEEEEEeeCCCcEEEEEECCCCeE-Ee-eeeccCcCeeEEEEeeCCCEEe
Q 024868 212 PFLFCTVQRGDKALLAVYDISTWNK-IG-HKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 212 ~~~~~~~~~~~d~~i~~~d~~~~~~-~~-~~~~~~~~v~~~~~s~dg~~la 260 (261)
++.++.|+.|++|.+..... .. .-..+..++..+.||+|+++|.
T Consensus 462 -----lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~ 507 (626)
T KOG2106|consen 462 -----LAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLV 507 (626)
T ss_pred -----EEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEE
Confidence 79999999999999875443 22 2223448999999999999986
No 133
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=1.4e-21 Score=141.93 Aligned_cols=241 Identities=16% Similarity=0.211 Sum_probs=171.3
Q ss_pred CCCceeeEEEEEee----CCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCC---CceEEEECCC
Q 024868 2 EGGGTVTCGSWIKR----PENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG---DPMTIAVNPS 74 (261)
Q Consensus 2 ~~~~~v~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~ 74 (261)
..+..|+..+|.+. ....+++++.+.+. -|..||.-++++.. ....-.|.+ ...+++|+||
T Consensus 102 ~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~--------PIh~wdaftG~lra----Sy~~ydh~de~taAhsL~Fs~D 169 (406)
T KOG2919|consen 102 QEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ--------PIHLWDAFTGKLRA----SYRAYDHQDEYTAAHSLQFSPD 169 (406)
T ss_pred ccCCEEEEEEeeeccccCCCccceeeeccccC--------ceeeeecccccccc----chhhhhhHHhhhhheeEEecCC
Confidence 35678999999742 12356777777777 67777877776511 112222333 4578999999
Q ss_pred CCeEEEEecCCcEEEEEEeCCccccceee-eeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeeccc
Q 024868 75 GDDFVCSTTNGGCKLFEVYGGATDINLLA-KKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPK 152 (261)
Q Consensus 75 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 152 (261)
|..|++| ....|++||+........... .........+-+.+++|+| +.+.++.++....+-||.-..+.++..+.+
T Consensus 170 GeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg 248 (406)
T KOG2919|consen 170 GEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG 248 (406)
T ss_pred CCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc
Confidence 9999886 566799999943322111111 1111223357789999999 566899999888888988777888777778
Q ss_pred cCCceeEEEEcCCCCEEEEecC-CCcEEEEEccC-CcEEEEEeecCCCceEE--EEEecCCCcceEEEEEeeCCCcEEEE
Q 024868 153 AHKSVLDMDFSLDSEFLATTST-DGSARIWKTED-GVAWTFLTRNSDEKIEL--CRFSKDGTKPFLFCTVQRGDKALLAV 228 (261)
Q Consensus 153 ~~~~v~~~~~s~~~~~l~~~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~v~~--~~~~p~~~~~~~~~~~~~~~d~~i~~ 228 (261)
|.+.|+.++|.++|+.|++|+. |..|..||++. +.++..+..|....-.. ....|++++ +++|+.||.|++
T Consensus 249 h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~-----LasG~tdG~V~v 323 (406)
T KOG2919|consen 249 HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEI-----LASGDTDGSVRV 323 (406)
T ss_pred cCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCce-----eeccCCCccEEE
Confidence 8889999999999999999986 67899999985 44555555544321223 345688887 799999999999
Q ss_pred EECCC-CeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 229 YDIST-WNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 229 ~d~~~-~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
||+++ +..+..+..+...+..++++|-=..+|
T Consensus 324 wdlk~~gn~~sv~~~~sd~vNgvslnP~mpila 356 (406)
T KOG2919|consen 324 WDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILA 356 (406)
T ss_pred EecCCCCCcccccccccccccceecCcccceee
Confidence 99998 665666667777888888888654444
No 134
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.4e-23 Score=165.19 Aligned_cols=183 Identities=17% Similarity=0.244 Sum_probs=160.2
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
.+||-|+.|+++ ..+++.|..+| .|..||.+.... ...+.+|...+..+.|+|-+.+.+.|+.
T Consensus 70 espIeSl~f~~~---E~Llaagsasg--------tiK~wDleeAk~------vrtLtgh~~~~~sv~f~P~~~~~a~gSt 132 (825)
T KOG0267|consen 70 ESPIESLTFDTS---ERLLAAGSASG--------TIKVWDLEEAKI------VRTLTGHLLNITSVDFHPYGEFFASGST 132 (825)
T ss_pred CCcceeeecCcc---hhhhcccccCC--------ceeeeehhhhhh------hhhhhccccCcceeeeccceEEeccccc
Confidence 589999999985 67899999999 889999987765 5578999999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
|+.+++||.+...+... .-.|...+..++|+|+|++++.++.|.++++||...++....+..|.+.+..+.|+
T Consensus 133 dtd~~iwD~Rk~Gc~~~-------~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~h 205 (825)
T KOG0267|consen 133 DTDLKIWDIRKKGCSHT-------YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFH 205 (825)
T ss_pred cccceehhhhccCceee-------ecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccC
Confidence 99999999986665111 11255678999999999999999999999999999999888888888999999999
Q ss_pred CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (261)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 211 (261)
|..-++++|+.|+++++||+++.+.+-....... .|.+.+|+|+++.
T Consensus 206 p~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~-~v~~~~fn~~~~~ 252 (825)
T KOG0267|consen 206 PLEVLLAPGSSDRTVRFWDLETFEVISSGKPETD-GVRSLAFNPDGKI 252 (825)
T ss_pred chhhhhccCCCCceeeeeccceeEEeeccCCccC-CceeeeecCCcee
Confidence 9999999999999999999998888877665544 5999999999997
No 135
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.5e-21 Score=141.47 Aligned_cols=224 Identities=12% Similarity=0.172 Sum_probs=164.0
Q ss_pred eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCc
Q 024868 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (261)
Q Consensus 7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 86 (261)
-.|+.|++- +.++|+|..+| .+..||..+... ...+.+|..+|.+++||+||++|++++.|..
T Consensus 26 a~~~~Fs~~---G~~lAvGc~nG--------~vvI~D~~T~~i------ar~lsaH~~pi~sl~WS~dgr~LltsS~D~s 88 (405)
T KOG1273|consen 26 AECCQFSRW---GDYLAVGCANG--------RVVIYDFDTFRI------ARMLSAHVRPITSLCWSRDGRKLLTSSRDWS 88 (405)
T ss_pred cceEEeccC---cceeeeeccCC--------cEEEEEccccch------hhhhhccccceeEEEecCCCCEeeeecCCce
Confidence 578999984 67999999999 777777776554 4578899999999999999999999999999
Q ss_pred EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCCeEEEEEccCceEEeeccccCC----ceeEEE
Q 024868 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDEPKAHK----SVLDMD 161 (261)
Q Consensus 87 i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~v~~~~ 161 (261)
+.+||+..+.. ...+.-..+|....|+|.. +..++.-.+..-.+.++..+.....-....+ ...+..
T Consensus 89 i~lwDl~~gs~--------l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~ 160 (405)
T KOG1273|consen 89 IKLWDLLKGSP--------LKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGV 160 (405)
T ss_pred eEEEeccCCCc--------eeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccccc
Confidence 99999998875 2233346789999999943 3333333444455556554333211111111 233446
Q ss_pred EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC-------
Q 024868 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW------- 234 (261)
Q Consensus 162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~------- 234 (261)
|.+.|+++++|...|.+.++|..+-+++..+.......|..+.++..|+. ++....|+.|+.|+++.-
T Consensus 161 fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~-----liiNtsDRvIR~ye~~di~~~~r~~ 235 (405)
T KOG1273|consen 161 FDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRF-----LIINTSDRVIRTYEISDIDDEGRDG 235 (405)
T ss_pred ccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcE-----EEEecCCceEEEEehhhhcccCccC
Confidence 89999999999999999999999999998887665446999999999998 688889999999998621
Q ss_pred eEE--eeeec--cCcCeeEEEEeeCCCEEe
Q 024868 235 NKI--GHKRL--LRKPASVLSISLDGKYLA 260 (261)
Q Consensus 235 ~~~--~~~~~--~~~~v~~~~~s~dg~~la 260 (261)
+.. +.++. ....=.++.||.||.|++
T Consensus 236 e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~ 265 (405)
T KOG1273|consen 236 EVEPEHKLQDVVNKLQWKKCCFSGDGEYVC 265 (405)
T ss_pred CcChhHHHHHHHhhhhhhheeecCCccEEE
Confidence 111 11110 011224688999999885
No 136
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.89 E-value=2.8e-21 Score=138.55 Aligned_cols=242 Identities=12% Similarity=0.141 Sum_probs=177.4
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCC-----eE
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-----DF 78 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l 78 (261)
-.++|.++|+..++....+++|+-.. -..|.++|..+|.++.++...+ .-.|.-+++.+.|.|+.. +|
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~E--e~~Nkvqiv~ld~~s~e~~~~a-----~fd~~YP~tK~~wiPd~~g~~pdlL 116 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIE--EYNNKVQIVQLDEDSGELVEDA-----NFDHPYPVTKLMWIPDSKGVYPDLL 116 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeecc--ccCCeeEEEEEccCCCceeccC-----CCCCCCCccceEecCCccccCcchh
Confidence 35789999998787788999998766 4568899999997777652211 135788999999999763 45
Q ss_pred EEEecCCcEEEEEEeCCcccc--ceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCce---EEeeccc
Q 024868 79 VCSTTNGGCKLFEVYGGATDI--NLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLR---IILDEPK 152 (261)
Q Consensus 79 ~~~~~dg~i~i~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~ 152 (261)
|++ .| .+++|.+....... +......+......+++++.|+. |-++|.+.+-|.+..+||++++. ...++..
T Consensus 117 ATs-~D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA 194 (364)
T KOG0290|consen 117 ATS-SD-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA 194 (364)
T ss_pred hcc-cC-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe
Confidence 543 34 59999997432211 11111112223357899999998 78899999999999999999863 2456678
Q ss_pred cCCceeEEEEcCCCC-EEEEecCCCcEEEEEccCCcEEEEEee-cC-CCceEEEEEecCCCcceEEEEEeeCCCcEEEEE
Q 024868 153 AHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTR-NS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY 229 (261)
Q Consensus 153 ~~~~v~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~-~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~ 229 (261)
|.++|+.++|..++. .+|+.+.||++++||++.-+.-..+.. .. ..+...++|++.... |+. ..+.+...|.+.
T Consensus 195 HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpn-ymA--Tf~~dS~~V~iL 271 (364)
T KOG0290|consen 195 HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPN-YMA--TFAMDSNKVVIL 271 (364)
T ss_pred cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCch-HHh--hhhcCCceEEEE
Confidence 888999999998654 789999999999999997665444432 22 346888999987766 332 223344579999
Q ss_pred ECCCCe-EEeeeeccCcCeeEEEEeeCCC
Q 024868 230 DISTWN-KIGHKRLLRKPASVLSISLDGK 257 (261)
Q Consensus 230 d~~~~~-~~~~~~~~~~~v~~~~~s~dg~ 257 (261)
|++... ++..+..|++.|..++|.|..+
T Consensus 272 DiR~P~tpva~L~~H~a~VNgIaWaPhS~ 300 (364)
T KOG0290|consen 272 DIRVPCTPVARLRNHQASVNGIAWAPHSS 300 (364)
T ss_pred EecCCCcceehhhcCcccccceEecCCCC
Confidence 999754 5678889999999999999754
No 137
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=6.8e-23 Score=150.71 Aligned_cols=167 Identities=14% Similarity=0.199 Sum_probs=134.1
Q ss_pred eecCCCCCceEEEECCC-CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeE
Q 024868 58 VFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL 136 (261)
Q Consensus 58 ~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 136 (261)
.+.-..+.|.++.|+|- -..|+++..|+.|.+||++......+... .-.-+.++|+|.+-.+++++.|..+
T Consensus 182 smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~--------~mRTN~IswnPeafnF~~a~ED~nl 253 (433)
T KOG0268|consen 182 SMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL--------TMRTNTICWNPEAFNFVAANEDHNL 253 (433)
T ss_pred eeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee--------eccccceecCccccceeeccccccc
Confidence 34445678999999995 45677777999999999998876433322 2345779999988888999999999
Q ss_pred EEEEccCceEE-eeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEE
Q 024868 137 RIMHWPSLRII-LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (261)
Q Consensus 137 ~~~d~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~ 215 (261)
+.||++..+.. .....|.+.|.+++|||.|+-+++||.|.+|+||..+.+.....+.......|.++.||.|.++
T Consensus 254 Y~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsky---- 329 (433)
T KOG0268|consen 254 YTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKY---- 329 (433)
T ss_pred eehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccE----
Confidence 99999876543 3445666789999999999999999999999999999877655444334446999999999999
Q ss_pred EEEeeCCCcEEEEEECCCCeEE
Q 024868 216 CTVQRGDKALLAVYDISTWNKI 237 (261)
Q Consensus 216 ~~~~~~~d~~i~~~d~~~~~~~ 237 (261)
+++|++|+.|++|.....+.+
T Consensus 330 -i~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 330 -IISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred -EEecCCCcceeeeecchhhhc
Confidence 799999999999998765544
No 138
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.89 E-value=3e-21 Score=140.01 Aligned_cols=232 Identities=14% Similarity=0.201 Sum_probs=171.5
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
..||+|.||+++ ...+|++.... ++.+|...+..+ ....+.+..|...|+.++|+|..++|++++.
T Consensus 10 ~~pitchAwn~d---rt~iAv~~~~~--------evhiy~~~~~~~---w~~~htls~Hd~~vtgvdWap~snrIvtcs~ 75 (361)
T KOG1523|consen 10 LEPITCHAWNSD---RTQIAVSPNNH--------EVHIYSMLGADL---WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSH 75 (361)
T ss_pred cCceeeeeecCC---CceEEeccCCc--------eEEEEEecCCCC---ceeceehhhhCcceeEEeecCCCCceeEccC
Confidence 579999999996 56888887776 666665555441 2346789999999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEe----eccccCCceeE
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL----DEPKAHKSVLD 159 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~----~~~~~~~~v~~ 159 (261)
|..-++|....+.. ..+....+.+....+++.|+|.++.|++|+..+.|.+|-++....-. ......+.|.+
T Consensus 76 drnayVw~~~~~~~----WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~s 151 (361)
T KOG1523|consen 76 DRNAYVWTQPSGGT----WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTS 151 (361)
T ss_pred CCCccccccCCCCe----eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceee
Confidence 99999999954432 22224445567889999999999999999999999999876544311 12233457999
Q ss_pred EEEcCCCCEEEEecCCCcEEEEEccC------------------CcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeC
Q 024868 160 MDFSLDSEFLATTSTDGSARIWKTED------------------GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG 221 (261)
Q Consensus 160 ~~~s~~~~~l~~~~~d~~i~iwd~~~------------------~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~ 221 (261)
++|+|++-+|++|+.|+..++|...- |+.+.++. ...+.+..+.|+|+|.. ++-.+
T Consensus 152 ldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~-----lawv~ 225 (361)
T KOG1523|consen 152 LDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNR-----LAWVG 225 (361)
T ss_pred eeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCE-----eeEec
Confidence 99999999999999999999997531 22333332 23457999999999998 68888
Q ss_pred CCcEEEEEECCCCe-EEeeeeccCcCeeEEEEeeCCCEE
Q 024868 222 DKALLAVYDISTWN-KIGHKRLLRKPASVLSISLDGKYL 259 (261)
Q Consensus 222 ~d~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~s~dg~~l 259 (261)
.|..+.+-|..... .+.......-+..++.|-.+...+
T Consensus 226 Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv 264 (361)
T KOG1523|consen 226 HDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVV 264 (361)
T ss_pred CCCceEEeecCCCchhccchhhccCCceeeEeecCCcee
Confidence 99999999987664 232333333555666665554443
No 139
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.1e-19 Score=131.33 Aligned_cols=240 Identities=11% Similarity=0.128 Sum_probs=169.0
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC--CCCeEEEEe
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCST 82 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~ 82 (261)
--|.|+.|.+. ++.+|+++.|... +||.++..++.+ ......+.|.+.|..+.|.+ -|+.+|+++
T Consensus 14 DlihdVs~D~~---GRRmAtCSsDq~v------kI~d~~~~s~~W----~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS 80 (361)
T KOG2445|consen 14 DLIHDVSFDFY---GRRMATCSSDQTV------KIWDSTSDSGTW----SCTSSWRAHDGSIWRVVWAHPEFGQVVATCS 80 (361)
T ss_pred ceeeeeeeccc---CceeeeccCCCcE------EEEeccCCCCce----EEeeeEEecCCcEEEEEecCccccceEEEEe
Confidence 34889999885 5678889888822 444444444544 33567889999999999954 599999999
Q ss_pred cCCcEEEEEEeCCcc--ccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccCCeEEEEEccCceEEe------ecc-
Q 024868 83 TNGGCKLFEVYGGAT--DINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIIL------DEP- 151 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~------~~~- 151 (261)
.|+++.||.-..... ...............+.|+++.|.| -|-.+++++.||.++||+......+. .+.
T Consensus 81 ~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~ 160 (361)
T KOG2445|consen 81 YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN 160 (361)
T ss_pred cCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence 999999998743221 1112222223334468899999999 57789999999999999875432211 111
Q ss_pred ------ccCCceeEEEEcCC---CCEEEEecCC-----CcEEEEEccCCc----EEEEEeecCCCceEEEEEecCC-Ccc
Q 024868 152 ------KAHKSVLDMDFSLD---SEFLATTSTD-----GSARIWKTEDGV----AWTFLTRNSDEKIELCRFSKDG-TKP 212 (261)
Q Consensus 152 ------~~~~~v~~~~~s~~---~~~l~~~~~d-----~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~p~~-~~~ 212 (261)
.++.+..|+.|+|. ..+||.|+.+ +.++||....+. .+.++..+. .+|++++|.|+- +..
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~-dpI~di~wAPn~Gr~y 239 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT-DPIRDISWAPNIGRSY 239 (361)
T ss_pred ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC-CcceeeeeccccCCce
Confidence 23456889999983 5678888866 478899866432 344555444 489999999974 432
Q ss_pred eEEEEEeeCCCcEEEEEECCCC--------------------eEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 213 FLFCTVQRGDKALLAVYDISTW--------------------NKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 213 ~~~~~~~~~~d~~i~~~d~~~~--------------------~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
.+ +++++.|| |+||.++.. +.+..+..|.+.|..+.|+-.|..|++
T Consensus 240 ~~--lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsS 305 (361)
T KOG2445|consen 240 HL--LAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSS 305 (361)
T ss_pred ee--EEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEee
Confidence 33 68888999 999998731 224456678899999999999988863
No 140
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.2e-20 Score=142.96 Aligned_cols=185 Identities=20% Similarity=0.208 Sum_probs=151.6
Q ss_pred CCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEcc
Q 024868 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (261)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 142 (261)
.++|.+++-+|+|.+|+.|+..|.+++|.+.++..... ...|-..|+++.|+-||.+|++|+.||.|.+|++-
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v-------~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV-------LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHH-------HHhhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence 47799999999999999988999999999999986221 23455789999999999999999999999999873
Q ss_pred ---------CceEEeeccccCCceeEEEEcCC--CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868 143 ---------SLRIILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (261)
Q Consensus 143 ---------~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 211 (261)
+-++...+..|.-+|+++...+. ..++++++.|.++++||+..|..+.++... ..+.+++.+|.++.
T Consensus 154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp--~si~av~lDpae~~ 231 (476)
T KOG0646|consen 154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP--SSIKAVALDPAERV 231 (476)
T ss_pred eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC--CcceeEEEcccccE
Confidence 22344455555568999988765 458999999999999999999998888743 45999999999998
Q ss_pred ceEEEEEeeCCCcEEEEEECCCCe----------------EEeeeeccCc--CeeEEEEeeCCCEEeC
Q 024868 212 PFLFCTVQRGDKALLAVYDISTWN----------------KIGHKRLLRK--PASVLSISLDGKYLAM 261 (261)
Q Consensus 212 ~~~~~~~~~~~d~~i~~~d~~~~~----------------~~~~~~~~~~--~v~~~~~s~dg~~la~ 261 (261)
++.|+.+|.|.+.++.... .+..+.+|.+ .|++++.+-||..|++
T Consensus 232 -----~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlS 294 (476)
T KOG0646|consen 232 -----VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLS 294 (476)
T ss_pred -----EEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEe
Confidence 6889999999998875322 3345556666 8999999999999874
No 141
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=6.5e-21 Score=137.21 Aligned_cols=183 Identities=17% Similarity=0.224 Sum_probs=138.3
Q ss_pred CCCCCceEEEECCC-CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEE
Q 024868 61 ESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (261)
Q Consensus 61 ~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~ 139 (261)
...+.|.+++|||. ...+++++.|++|++|+++...... ......+.++|.+++|+.||..+++|+.|+.+++|
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~-----~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV-----PKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW 99 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCccc-----chhhhccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence 34678999999994 5556688999999999998743211 12334467899999999999999999999999999
Q ss_pred EccCceEEeeccccCCceeEEEEcCCCC--EEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEE
Q 024868 140 HWPSLRIILDEPKAHKSVLDMDFSLDSE--FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT 217 (261)
Q Consensus 140 d~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~ 217 (261)
|+.+++. ..+-.|..+|..+.|-+... .|++|+-|.+|+.||++..+++.++.... .++++.. .+.+ +
T Consensus 100 DL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe--RvYa~Dv----~~pm---~ 169 (347)
T KOG0647|consen 100 DLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE--RVYAADV----LYPM---A 169 (347)
T ss_pred EccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc--eeeehhc----cCce---e
Confidence 9999965 56777888999999987655 89999999999999999999998887543 3665533 2222 4
Q ss_pred EeeCCCcEEEEEECCCCeEEee--eeccCcCeeEEEEeeCCCE
Q 024868 218 VQRGDKALLAVYDISTWNKIGH--KRLLRKPASVLSISLDGKY 258 (261)
Q Consensus 218 ~~~~~d~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~s~dg~~ 258 (261)
+.+..++.|.+|+++.+..... .......+.+++.-+|+.-
T Consensus 170 vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~ 212 (347)
T KOG0647|consen 170 VVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG 212 (347)
T ss_pred EEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCc
Confidence 5566677899999987654321 1223355678887776553
No 142
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=2e-21 Score=148.61 Aligned_cols=185 Identities=15% Similarity=0.161 Sum_probs=150.0
Q ss_pred CceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCc
Q 024868 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL 144 (261)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 144 (261)
.-.|++......++++|+..+.|+|||++.+.. . ...-.|...|+++.++....+||+++..|.|.+..+.++
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~-h------r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~ 153 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLI-H------RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK 153 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHHHH-h------hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccC
Confidence 455666666678999999999999999986543 1 222345688999999999999999999999999999888
Q ss_pred eEEeeccccCC-ceeEEEEcCCCCE-EEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCC
Q 024868 145 RIILDEPKAHK-SVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD 222 (261)
Q Consensus 145 ~~~~~~~~~~~-~v~~~~~s~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~ 222 (261)
.....+....+ .++-+.++|..++ |.+++++|.|.+||+....++..+...+.+|...++|+|.+..+ +++.+.
T Consensus 154 ~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l----~vsVG~ 229 (673)
T KOG4378|consen 154 QKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL----LVSVGY 229 (673)
T ss_pred ccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce----EEEecc
Confidence 76544443323 5789999998775 55788999999999998888888877778899999999999875 588899
Q ss_pred CcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 223 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
|..|.+||.+..+....+ ....+.+.++|+++|.+|+.
T Consensus 230 Dkki~~yD~~s~~s~~~l-~y~~Plstvaf~~~G~~L~a 267 (673)
T KOG4378|consen 230 DKKINIYDIRSQASTDRL-TYSHPLSTVAFSECGTYLCA 267 (673)
T ss_pred cceEEEeeccccccccee-eecCCcceeeecCCceEEEe
Confidence 999999999976655433 35678999999999999873
No 143
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.88 E-value=5e-21 Score=154.34 Aligned_cols=197 Identities=17% Similarity=0.170 Sum_probs=164.8
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeee---cCCCCCceEEEECCCCCeEEEE
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF---DESEGDPMTIAVNPSGDDFVCS 81 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~ 81 (261)
..+++++.++ .++..+.|.+.| .|-.|+...+-. ...+ +.|.++|++++...-++.++++
T Consensus 449 ~~~~av~vs~---CGNF~~IG~S~G--------~Id~fNmQSGi~------r~sf~~~~ah~~~V~gla~D~~n~~~vsa 511 (910)
T KOG1539|consen 449 INATAVCVSF---CGNFVFIGYSKG--------TIDRFNMQSGIH------RKSFGDSPAHKGEVTGLAVDGTNRLLVSA 511 (910)
T ss_pred cceEEEEEec---cCceEEEeccCC--------eEEEEEcccCee------ecccccCccccCceeEEEecCCCceEEEc
Confidence 4466666666 578888898888 888898877654 3334 5799999999998888899999
Q ss_pred ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEE
Q 024868 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (261)
Q Consensus 82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~ 161 (261)
+.+|.++.||...... ...+.-...+.++..+.....++.+..|-.|+++|..+.+.++.+.+|...|++++
T Consensus 512 ~~~Gilkfw~f~~k~l--------~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~ 583 (910)
T KOG1539|consen 512 GADGILKFWDFKKKVL--------KKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMT 583 (910)
T ss_pred cCcceEEEEecCCcce--------eeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeE
Confidence 9999999999987763 33334456778888888888899999999999999999999888999999999999
Q ss_pred EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC-cEEEEEECCC
Q 024868 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-ALLAVYDIST 233 (261)
Q Consensus 162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d-~~i~~~d~~~ 233 (261)
|||||++|++++.|++|++||+.++.++-.+.. +.++.++.|+|+|.+ +++...| .-|++|--++
T Consensus 584 FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v--d~~~~sls~SPngD~-----LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 584 FSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV--DSPCTSLSFSPNGDF-----LATVHVDQNGIYLWSNKS 649 (910)
T ss_pred eCCCCcEEEEeecCCcEEEEeccCcceeeeEec--CCcceeeEECCCCCE-----EEEEEecCceEEEEEchh
Confidence 999999999999999999999999999988764 446899999999998 5666655 5699997543
No 144
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=7.1e-21 Score=138.33 Aligned_cols=227 Identities=11% Similarity=0.110 Sum_probs=171.8
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEc----CC--------------------CCcee--------c
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFD----PK--------------------TTSVY--------T 51 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~----~~--------------------~~~~~--------~ 51 (261)
.|.|.|++|++. ..+++++++|+.. +||.+- .. ..... .
T Consensus 190 ~GSVNsikfh~s---~~L~lTaSGD~ta------HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~t 260 (481)
T KOG0300|consen 190 TGSVNSIKFHNS---GLLLLTASGDETA------HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHT 260 (481)
T ss_pred ccceeeEEeccc---cceEEEccCCcch------HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCce
Confidence 578999999995 5678888888754 444311 00 00000 0
Q ss_pred CCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCC-CCCCCeEEEEEeeCCcEEEEe
Q 024868 52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL-QDAGPQKCLSFSVDGSRFAAG 130 (261)
Q Consensus 52 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~ 130 (261)
...+...+++|...|.+..|-..|+.+++++.|.+..+||++++.. ...+ .|....+.+.-+|..+++++.
T Consensus 261 iRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~--------v~~LtGHd~ELtHcstHptQrLVvTs 332 (481)
T KOG0300|consen 261 IRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEV--------VNILTGHDSELTHCSTHPTQRLVVTS 332 (481)
T ss_pred eeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCce--------eccccCcchhccccccCCcceEEEEe
Confidence 1123457889999999999999999999999999999999999875 3333 345667778889999999999
Q ss_pred ccCCeEEEEEccCceE-EeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCc-EEEEEeecCCCceEEEEEecC
Q 024868 131 GVDGHLRIMHWPSLRI-ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKD 208 (261)
Q Consensus 131 ~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~ 208 (261)
+.|.+.++||++..-. +..+.+|...|+++.|..+. .++++++|.+|++||+++.+ ++.++. .+.+++.++.+..
T Consensus 333 SrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR--tdS~~NRvavs~g 409 (481)
T KOG0300|consen 333 SRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR--TDSPANRVAVSKG 409 (481)
T ss_pred ccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee--cCCccceeEeecC
Confidence 9999999999985432 34456677789999998765 58899999999999999754 566665 3446999999988
Q ss_pred CCcceEEEEEeeCCCcEEEEEECCCCeEE----eeeeccCcCeeEEEEeeC
Q 024868 209 GTKPFLFCTVQRGDKALLAVYDISTWNKI----GHKRLLRKPASVLSISLD 255 (261)
Q Consensus 209 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~----~~~~~~~~~v~~~~~s~d 255 (261)
++. ++.-.++..|++||+...... ...++|...|++.+|..+
T Consensus 410 ~~i-----IAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ee 455 (481)
T KOG0300|consen 410 HPI-----IAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEE 455 (481)
T ss_pred Cce-----EEeccCCceEEEEecCCCccccCCcccccccceeeeeeecccc
Confidence 876 577788899999999755432 234577788999999865
No 145
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.88 E-value=1.3e-20 Score=135.07 Aligned_cols=246 Identities=16% Similarity=0.172 Sum_probs=165.9
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCC-CCCCCCceEEEEEcCCCCceecCC-eEEeeec-CCCCCceEEEECCCCCeEEE
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSR-ASSSPSVLEIFSFDPKTTSVYTSP-LVTYVFD-ESEGDPMTIAVNPSGDDFVC 80 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~l~~ 80 (261)
.|.|..++=+|. +..++++...+. ..+.-....||..-..-+.....+ .....+. .+-+.+.|+.|.|++..+++
T Consensus 63 agEvw~las~P~--d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klas 140 (370)
T KOG1007|consen 63 AGEVWDLASSPF--DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLAS 140 (370)
T ss_pred CcceehhhcCCC--CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEE
Confidence 456666666664 355666544322 112222334444322222110111 1112232 45578999999999999988
Q ss_pred EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccCCeEEEEEccCceEEeeccccCC-ce
Q 024868 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SV 157 (261)
Q Consensus 81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~v 157 (261)
-. |..|.+|++.........+. ......+....++-+|+| |++.+++. .|+++..||+++.+....+...|+ .+
T Consensus 141 m~-dn~i~l~~l~ess~~vaev~-ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~v 217 (370)
T KOG1007|consen 141 MD-DNNIVLWSLDESSKIVAEVL-SSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRV 217 (370)
T ss_pred ec-cCceEEEEcccCcchheeec-ccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhccee
Confidence 65 77899999987765221111 111222345678889999 78888887 789999999999888777766665 69
Q ss_pred eEEEEcCCCC-EEEEecCCCcEEEEEccC-CcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC-
Q 024868 158 LDMDFSLDSE-FLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW- 234 (261)
Q Consensus 158 ~~~~~s~~~~-~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~- 234 (261)
..+.|+|+.+ +|+++++||.|+|||.+. ..+++.+..|.. .|+++.|+|....+ +.+++.|..|.+|.+.+-
T Consensus 218 rdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH-WvW~VRfn~~hdqL----iLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 218 RDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH-WVWAVRFNPEHDQL----ILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred eeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce-EEEEEEecCccceE----EEecCCCceeEEEeccccc
Confidence 9999999876 578899999999999985 557777777654 89999999988875 688899999999976421
Q ss_pred ----------------------------eEEeeeeccCcCeeEEEEeeCCCEE
Q 024868 235 ----------------------------NKIGHKRLLRKPASVLSISLDGKYL 259 (261)
Q Consensus 235 ----------------------------~~~~~~~~~~~~v~~~~~s~dg~~l 259 (261)
..+.++..|+..|++++||.-..++
T Consensus 293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWi 345 (370)
T KOG1007|consen 293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWI 345 (370)
T ss_pred cccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCee
Confidence 0123455677889999998754443
No 146
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=5e-20 Score=132.98 Aligned_cols=223 Identities=12% Similarity=0.073 Sum_probs=164.0
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
+--|..+.|+|. .+.+++++.|| .+..|+.....+ .. .-.|..++.+.+|.++. .+++|+-
T Consensus 13 ~d~IS~v~f~~~---~~~LLvssWDg--------slrlYdv~~~~l------~~-~~~~~~plL~c~F~d~~-~~~~G~~ 73 (323)
T KOG1036|consen 13 EDGISSVKFSPS---SSDLLVSSWDG--------SLRLYDVPANSL------KL-KFKHGAPLLDCAFADES-TIVTGGL 73 (323)
T ss_pred hhceeeEEEcCc---CCcEEEEeccC--------cEEEEeccchhh------hh-heecCCceeeeeccCCc-eEEEecc
Confidence 345889999963 45566666999 777777665543 22 23478899999998754 5889999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
||.|+.+|+.++.. .....|..++.++.+++....+++|+.|++|++||.+...... .....+.|.++..+
T Consensus 74 dg~vr~~Dln~~~~--------~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~-~~d~~kkVy~~~v~ 144 (323)
T KOG1036|consen 74 DGQVRRYDLNTGNE--------DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVG-TFDQGKKVYCMDVS 144 (323)
T ss_pred CceEEEEEecCCcc--------eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccc-ccccCceEEEEecc
Confidence 99999999998874 4455678899999999988899999999999999988644332 23334478888765
Q ss_pred CCCCEEEEecCCCcEEEEEccCCcEEE-EEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC----eEEe
Q 024868 164 LDSEFLATTSTDGSARIWKTEDGVAWT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----NKIG 238 (261)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~----~~~~ 238 (261)
|+.|+.|+.|..+.+||+++..... .-.......++++++-|++.- .+.++-||.|.+=.+... +.-.
T Consensus 145 --g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG-----y~~sSieGRVavE~~d~s~~~~skky 217 (323)
T KOG1036|consen 145 --GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG-----YVVSSIEGRVAVEYFDDSEEAQSKKY 217 (323)
T ss_pred --CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCc-----eEEEeecceEEEEccCCchHHhhhce
Confidence 7789999999999999999765433 222233446999999997776 477888999888665543 1112
Q ss_pred eeeccC---------cCeeEEEEeeCCCEEeC
Q 024868 239 HKRLLR---------KPASVLSISLDGKYLAM 261 (261)
Q Consensus 239 ~~~~~~---------~~v~~~~~s~dg~~la~ 261 (261)
.+..|. .+|.+++|+|--..+|+
T Consensus 218 aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaT 249 (323)
T KOG1036|consen 218 AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFAT 249 (323)
T ss_pred eEEeeecccCCceEEEEeceeEeccccceEEe
Confidence 233332 47999999998666663
No 147
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.2e-20 Score=137.73 Aligned_cols=232 Identities=14% Similarity=0.176 Sum_probs=155.4
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeec-CCCCCceEEEECCC-CCeEEEEec
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD-ESEGDPMTIAVNPS-GDDFVCSTT 83 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~~~~~ 83 (261)
.+..++|++. -..++++..|. .|..||...... ..++ .....|++++|-|. +..|+.|..
T Consensus 100 dlr~~aWhqH---~~~fava~ndd--------vVriy~ksst~p-------t~Lks~sQrnvtclawRPlsaselavgCr 161 (445)
T KOG2139|consen 100 DLRGVAWHQH---IIAFAVATNDD--------VVRIYDKSSTCP-------TKLKSVSQRNVTCLAWRPLSASELAVGCR 161 (445)
T ss_pred ceeeEeechh---hhhhhhhccCc--------EEEEeccCCCCC-------ceecchhhcceeEEEeccCCcceeeeeec
Confidence 4567899984 55677888888 888888766321 1222 23467999999995 567888888
Q ss_pred CCcEEEEEEeCCccccce------eeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cCCeEEEEEccCceEEeeccccCCc
Q 024868 84 NGGCKLFEVYGGATDINL------LAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDEPKAHKS 156 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~ 156 (261)
.| |.+|........... ...+....+++.+|++++|++||..+++++ .|..|.+||..++..+.......+.
T Consensus 162 ~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg 240 (445)
T KOG2139|consen 162 AG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGG 240 (445)
T ss_pred ce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCc
Confidence 77 999988654321111 001112223457999999999999999987 5778999999998876555556668
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC---
Q 024868 157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST--- 233 (261)
Q Consensus 157 v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~--- 233 (261)
+.-+.|||||.+|.+++-|+..++|+.....-........+ .|...+|+|+|+.++ ++.+..-.++--....
T Consensus 241 ~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg-rvqtacWspcGsfLL----f~~sgsp~lysl~f~~~~~ 315 (445)
T KOG2139|consen 241 FSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG-RVQTACWSPCGSFLL----FACSGSPRLYSLTFDGEDS 315 (445)
T ss_pred eeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC-ceeeeeecCCCCEEE----EEEcCCceEEEEeecCCCc
Confidence 89999999999999999999999996554332222322333 699999999999842 3333322222111110
Q ss_pred ------C-eE---Eee---------eeccCcCeeEEEEeeCCCEEeC
Q 024868 234 ------W-NK---IGH---------KRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 234 ------~-~~---~~~---------~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+ +. +.. .....+++.+++|.|.|.|||+
T Consensus 316 ~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav 362 (445)
T KOG2139|consen 316 VFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAV 362 (445)
T ss_pred cccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEE
Confidence 0 00 000 0011367889999999999985
No 148
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.87 E-value=9.7e-21 Score=135.78 Aligned_cols=241 Identities=15% Similarity=0.186 Sum_probs=173.1
Q ss_pred CCCceeeEEEEEeeCCc--ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCC-eEEeeecCCCCCceEEEECC-CCCe
Q 024868 2 EGGGTVTCGSWIKRPEN--VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSP-LVTYVFDESEGDPMTIAVNP-SGDD 77 (261)
Q Consensus 2 ~~~~~v~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~ 77 (261)
+.-+|++.+.|.|++.+ ..++|+.+. .+++|..+.+...+..+. +....-..+..+++++.|+. +-++
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--------~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~ 165 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--------FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNL 165 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--------eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcce
Confidence 34589999999998743 345665544 237887776555432211 11222344567899999987 7788
Q ss_pred EEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCCeEEEEEccCceEEeeccc---c
Q 024868 78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDEPK---A 153 (261)
Q Consensus 78 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~ 153 (261)
+.+++-|.++.|||++.+.. .. -..+.+.|...|..++|...+ ..||+.+.||.++++|++..+....+.+ .
T Consensus 166 igtSSiDTTCTiWdie~~~~-~~---vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~ 241 (364)
T KOG0290|consen 166 IGTSSIDTTCTIWDIETGVS-GT---VKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP 241 (364)
T ss_pred eEeecccCeEEEEEEeeccc-cc---eeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCC
Confidence 88999999999999998732 00 013345678999999999865 4788899999999999987664332322 2
Q ss_pred CCceeEEEEcC-CCCEEEEecCC-CcEEEEEccC-CcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEE
Q 024868 154 HKSVLDMDFSL-DSEFLATTSTD-GSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD 230 (261)
Q Consensus 154 ~~~v~~~~~s~-~~~~l~~~~~d-~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d 230 (261)
+.+...++|++ |.+++|+-..| ..|.|.|++. ..++.++..|.. .|+.++|.|..... +.++++|.++-+||
T Consensus 242 ~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~h----ictaGDD~qaliWD 316 (364)
T KOG0290|consen 242 STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSH----ICTAGDDCQALIWD 316 (364)
T ss_pred CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCce----eeecCCcceEEEEe
Confidence 44788999988 56778876554 6799999985 567888888876 59999999987764 68999999999999
Q ss_pred CCCCeE------EeeeeccCcCeeEEEEee-CCCEEe
Q 024868 231 ISTWNK------IGHKRLLRKPASVLSISL-DGKYLA 260 (261)
Q Consensus 231 ~~~~~~------~~~~~~~~~~v~~~~~s~-dg~~la 260 (261)
+.+.-. +. ....++.|..++|++ .+.+++
T Consensus 317 l~q~~~~~~~dPil-ay~a~~EVNqi~Ws~~~~Dwia 352 (364)
T KOG0290|consen 317 LQQMPRENGEDPIL-AYTAGGEVNQIQWSSSQPDWIA 352 (364)
T ss_pred cccccccCCCCchh-hhhccceeeeeeecccCCCEEE
Confidence 975322 11 122557899999995 355554
No 149
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=6.6e-21 Score=138.69 Aligned_cols=230 Identities=14% Similarity=0.131 Sum_probs=166.7
Q ss_pred ceeeEEEEEeeCC-cceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCC-CeEEEEe
Q 024868 5 GTVTCGSWIKRPE-NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCST 82 (261)
Q Consensus 5 ~~v~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~ 82 (261)
..-|.++|.-+-. ...++|+||..| .|+++|+...++ ...+.+|.+.|..+.+.|+. +++++++
T Consensus 90 Esfytcsw~yd~~~~~p~la~~G~~G--------vIrVid~~~~~~------~~~~~ghG~sINeik~~p~~~qlvls~S 155 (385)
T KOG1034|consen 90 ESFYTCSWSYDSNTGNPFLAAGGYLG--------VIRVIDVVSGQC------SKNYRGHGGSINEIKFHPDRPQLVLSAS 155 (385)
T ss_pred cceEEEEEEecCCCCCeeEEeeccee--------EEEEEecchhhh------ccceeccCccchhhhcCCCCCcEEEEec
Confidence 4567889987765 367888898888 999999988877 55688999999999999964 6788999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEe--------------
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL-------------- 148 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~-------------- 148 (261)
.|..|++|++++..+..-+ -....|...|.++.|+++|.+|++++.|.++.+|++...+...
T Consensus 156 kD~svRlwnI~~~~Cv~Vf----GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~ 231 (385)
T KOG1034|consen 156 KDHSVRLWNIQTDVCVAVF----GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTT 231 (385)
T ss_pred CCceEEEEeccCCeEEEEe----cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCcc
Confidence 9999999999998763222 2334567899999999999999999999999999997322100
Q ss_pred --------------eccccCCceeEEEEcCCCCEEEEecCCCcEEEEEc-cCCcE-------------EEEEeecCCCce
Q 024868 149 --------------DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKT-EDGVA-------------WTFLTRNSDEKI 200 (261)
Q Consensus 149 --------------~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~-~~~~~-------------~~~~~~~~~~~v 200 (261)
....|...|.|+.|- |.++++-+-++.|..|.. +-++. +.++.-... .+
T Consensus 232 ~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c-~i 308 (385)
T KOG1034|consen 232 RPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC-DI 308 (385)
T ss_pred CcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCcc-ce
Confidence 001122345555554 678999888999999987 22222 111221111 24
Q ss_pred EEE--EEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEe--ee--eccCcCeeEEEEeeCCCEEe
Q 024868 201 ELC--RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG--HK--RLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 201 ~~~--~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~--~~--~~~~~~v~~~~~s~dg~~la 260 (261)
+-+ +|.|-++. ++.+...|.+++||++..++.. ++ ......|.+.+||.||..|+
T Consensus 309 Wfirf~~d~~~~~-----la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv 369 (385)
T KOG1034|consen 309 WFIRFAFDPWQKM-----LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILV 369 (385)
T ss_pred EEEEEeecHHHHH-----HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEE
Confidence 444 45566776 6889999999999999776531 11 12336789999999999876
No 150
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=7.3e-21 Score=151.53 Aligned_cols=229 Identities=11% Similarity=0.104 Sum_probs=182.7
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC---CCCeEEE
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP---SGDDFVC 80 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~ 80 (261)
..-+.|++.+|+ ...+|+|...| .+.+|+..+... ...+..|...|.|+.|+. ..++|++
T Consensus 459 r~G~R~~~vSp~---gqhLAsGDr~G--------nlrVy~Lq~l~~------~~~~eAHesEilcLeyS~p~~~~kLLAS 521 (1080)
T KOG1408|consen 459 RFGFRALAVSPD---GQHLASGDRGG--------NLRVYDLQELEY------TCFMEAHESEILCLEYSFPVLTNKLLAS 521 (1080)
T ss_pred ccceEEEEECCC---cceecccCccC--------ceEEEEehhhhh------hhheecccceeEEEeecCchhhhHhhhh
Confidence 456889999996 66899998888 888888877665 556889999999999985 3568899
Q ss_pred EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC--cEEEEeccCCeEEEEEccCceEEeecccc-----
Q 024868 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG--SRFAAGGVDGHLRIMHWPSLRIILDEPKA----- 153 (261)
Q Consensus 81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~d~~i~~~d~~~~~~~~~~~~~----- 153 (261)
++.|.-|.+||+...-... ...-.|...|+++.|...| ..+++++.|..|.+--.+....-..+..+
T Consensus 522 asrdRlIHV~Dv~rny~l~------qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ 595 (1080)
T KOG1408|consen 522 ASRDRLIHVYDVKRNYDLV------QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLS 595 (1080)
T ss_pred ccCCceEEEEecccccchh------hhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccc
Confidence 9999999999997553211 2223456899999999877 77889989987764332211111122222
Q ss_pred CCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC--CceEEEEEecCCCcceEEEEEeeCCCcEEEEEEC
Q 024868 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD--EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231 (261)
Q Consensus 154 ~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~ 231 (261)
+..++.|+..|..+++++++.|..|+|||+.+|+..+.+++.++ +..-.+...|.|-| +++...|.++.+||.
T Consensus 596 ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY-----~atScsdktl~~~Df 670 (1080)
T KOG1408|consen 596 KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIY-----LATSCSDKTLCFVDF 670 (1080)
T ss_pred cceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccE-----EEEeecCCceEEEEe
Confidence 23689999999999999999999999999999999999986442 24556788999998 799999999999999
Q ss_pred CCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 232 STWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 232 ~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
-+|+++..+.+|...|+.+.|.+|-+.|+
T Consensus 671 ~sgEcvA~m~GHsE~VTG~kF~nDCkHlI 699 (1080)
T KOG1408|consen 671 VSGECVAQMTGHSEAVTGVKFLNDCKHLI 699 (1080)
T ss_pred ccchhhhhhcCcchheeeeeecccchhhe
Confidence 99999999999999999999999998875
No 151
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.87 E-value=2.3e-20 Score=147.80 Aligned_cols=219 Identities=13% Similarity=0.149 Sum_probs=174.8
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceE-EEECC-CCCeEEEEe
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMT-IAVNP-SGDDFVCST 82 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~l~~~~ 82 (261)
..|..++..+ ...++.++.++ ++..|+...+.+ .....+.+|.+-|.. +++-+ ++-++++|+
T Consensus 15 ~DVr~v~~~~----~~~i~s~sRd~--------t~~vw~~~~~~~----l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~ 78 (745)
T KOG0301|consen 15 SDVRAVAVTD----GVCIISGSRDG--------TVKVWAKKGKQY----LETHAFEGPKGFIANSICYAESDKGRLVVGG 78 (745)
T ss_pred cchheeEecC----CeEEeecCCCC--------ceeeeeccCccc----ccceecccCcceeeccceeccccCcceEeec
Confidence 3455555544 33678888888 788888877664 223556777777766 88875 555699999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 162 (261)
.|+.+.+|......+ ......|...|.++....++. +++|+.|.++++|-. ++....+.+|...|+++..
T Consensus 79 ~D~~i~v~~~~~~~P-------~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~ 148 (745)
T KOG0301|consen 79 MDTTIIVFKLSQAEP-------LYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVAS 148 (745)
T ss_pred ccceEEEEecCCCCc-------hhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeee
Confidence 999999999988765 122334668899888777777 899999999999975 4444557888889999999
Q ss_pred cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (261)
Q Consensus 163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~ 242 (261)
-|++ .+++|+.|..|++|.- ++.++++.+|.+ -|+.+++-|++.+ +++++||.|++|++ +|+.+..+.+
T Consensus 149 l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD-~VRgL~vl~~~~f------lScsNDg~Ir~w~~-~ge~l~~~~g 217 (745)
T KOG0301|consen 149 LPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTD-CVRGLAVLDDSHF------LSCSNDGSIRLWDL-DGEVLLEMHG 217 (745)
T ss_pred cCCC-cEEeccCcceeeeccC--Cchhhhhccchh-heeeeEEecCCCe------EeecCCceEEEEec-cCceeeeeec
Confidence 9887 7899999999999985 788899999877 5999999999885 89999999999999 6788888999
Q ss_pred cCcCeeEEEEeeCCCEEe
Q 024868 243 LRKPASVLSISLDGKYLA 260 (261)
Q Consensus 243 ~~~~v~~~~~s~dg~~la 260 (261)
|...+.+++..+++..++
T Consensus 218 htn~vYsis~~~~~~~Iv 235 (745)
T KOG0301|consen 218 HTNFVYSISMALSDGLIV 235 (745)
T ss_pred cceEEEEEEecCCCCeEE
Confidence 999999999766666654
No 152
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=5.3e-20 Score=137.05 Aligned_cols=210 Identities=10% Similarity=0.153 Sum_probs=161.7
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecC-CeEEeeecCCCCCceEEEECCC-CCeEEEE
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTS-PLVTYVFDESEGDPMTIAVNPS-GDDFVCS 81 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~ 81 (261)
.+||..++|+|- +.+.||+|+.|. ++.+|......+... ......+.+|...|.-++|+|. .+.|+++
T Consensus 81 t~~vLDi~w~Pf--nD~vIASgSeD~--------~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa 150 (472)
T KOG0303|consen 81 TAPVLDIDWCPF--NDCVIASGSEDT--------KVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA 150 (472)
T ss_pred cccccccccCcc--CCceeecCCCCc--------eEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhc
Confidence 589999999997 488999999999 777777655443322 2345679999999999999995 5678899
Q ss_pred ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCC-ceeEE
Q 024868 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDM 160 (261)
Q Consensus 82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~ 160 (261)
+.|.+|.+|++.++.. ...+.|...|.++.|+.||.++++.+.|..|++||.++++.+..-..|.+ .-...
T Consensus 151 g~Dn~v~iWnv~tgea--------li~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Ra 222 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEA--------LITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARA 222 (472)
T ss_pred cCCceEEEEeccCCce--------eeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCccee
Confidence 9999999999999985 34455889999999999999999999999999999999998877766665 34556
Q ss_pred EEcCCCCEEEEec---CCCcEEEEEccCCc-EEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868 161 DFSLDSEFLATTS---TDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (261)
Q Consensus 161 ~~s~~~~~l~~~~---~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~ 235 (261)
.|-.+|.++-+|. .+.++-+||..+-+ ++..........|.-.-|.||.+.+| +.|-.|+.|+-|.+....
T Consensus 223 ifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivY----l~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 223 IFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVY----LCGKGDSSIRYFEITNEP 297 (472)
T ss_pred EEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEE----EEecCCcceEEEEecCCC
Confidence 6888888444443 26789999977533 22222222333476667888888754 567789999999997655
No 153
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=7.2e-20 Score=145.06 Aligned_cols=230 Identities=10% Similarity=0.139 Sum_probs=168.0
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
.-|+.++|.|+. ..+++.++. +++.||++.+.+ ...+++|.+.|++++|+.||+++++|+.|
T Consensus 13 hci~d~afkPDG--sqL~lAAg~----------rlliyD~ndG~l------lqtLKgHKDtVycVAys~dGkrFASG~aD 74 (1081)
T KOG1538|consen 13 HCINDIAFKPDG--TQLILAAGS----------RLLVYDTSDGTL------LQPLKGHKDTVYCVAYAKDGKRFASGSAD 74 (1081)
T ss_pred cchheeEECCCC--ceEEEecCC----------EEEEEeCCCccc------ccccccccceEEEEEEccCCceeccCCCc
Confidence 457889999874 556666655 899999998886 67899999999999999999999999999
Q ss_pred CcEEEEEEeCCcccc-----------------ce----------eeee---CCCCCCCCCeEEEEEeeCCcEEEEeccCC
Q 024868 85 GGCKLFEVYGGATDI-----------------NL----------LAKK---MPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (261)
Q Consensus 85 g~i~i~~~~~~~~~~-----------------~~----------~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 134 (261)
..+.+|+-.-..... .+ .... ........++.+++|..||++++.|-.+|
T Consensus 75 K~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nG 154 (1081)
T KOG1538|consen 75 KSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNG 154 (1081)
T ss_pred eeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCc
Confidence 999999875332100 00 0000 01111235788999999999999999999
Q ss_pred eEEEEEccCceEEeecc---ccCCceeEEEEcCCC-----CEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEe
Q 024868 135 HLRIMHWPSLRIILDEP---KAHKSVLDMDFSLDS-----EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS 206 (261)
Q Consensus 135 ~i~~~d~~~~~~~~~~~---~~~~~v~~~~~s~~~-----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 206 (261)
+|.+-+- +++....+. +.+++|++++|+|.. ..++...-..++.++.+. |+.+..-.. .+....++.+.
T Consensus 155 TIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~-L~FdP~CisYf 231 (1081)
T KOG1538|consen 155 TISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRA-LNFDPCCISYF 231 (1081)
T ss_pred eEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeeccccc-CCCCchhheec
Confidence 9999863 444322222 244589999999953 356666666777777764 444432221 12236788999
Q ss_pred cCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 207 p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
|+|.+ +..|+.|+.+++|-. .|-.+.+.......|+.++..|+++++++
T Consensus 232 ~NGEy-----~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~ 280 (1081)
T KOG1538|consen 232 TNGEY-----ILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVV 280 (1081)
T ss_pred cCCcE-----EEEccCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEE
Confidence 99998 678899999999974 46677777777789999999999998763
No 154
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.86 E-value=4.4e-19 Score=136.09 Aligned_cols=223 Identities=16% Similarity=0.193 Sum_probs=166.5
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCC-CCCceEEEECCCCCeEEEEec
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-EGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~ 83 (261)
..|..++|+|.. .+++++.| .+ +++.|++.++.+.. ..-.++++ ...|.|++|.++|+ +++|..
T Consensus 201 e~v~~a~FHPtd--~nliit~G-k~--------H~~Fw~~~~~~l~k---~~~~fek~ekk~Vl~v~F~engd-viTgDS 265 (626)
T KOG2106|consen 201 EVVFLATFHPTD--PNLIITCG-KG--------HLYFWTLRGGSLVK---RQGIFEKREKKFVLCVTFLENGD-VITGDS 265 (626)
T ss_pred ceEEEEEeccCC--CcEEEEeC-Cc--------eEEEEEccCCceEE---EeeccccccceEEEEEEEcCCCC-EEeecC
Confidence 456778899973 56666543 44 79999998877632 12233333 35799999999997 778999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE-----------E-----
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-----------I----- 147 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-----------~----- 147 (261)
+|.|.||+..+.+.. .....|.+.|.++..-.+|.++- |+.|+.|..||-.-.+. +
T Consensus 266 ~G~i~Iw~~~~~~~~-------k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e 337 (626)
T KOG2106|consen 266 GGNILIWSKGTNRIS-------KQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAE 337 (626)
T ss_pred CceEEEEeCCCceEE-------eEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEec
Confidence 999999999665531 11226789999999999997655 99999999998321100 0
Q ss_pred ------------------------eeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEE
Q 024868 148 ------------------------LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELC 203 (261)
Q Consensus 148 ------------------------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~ 203 (261)
.....|......++.+|+...+++++.|+.+++|+ ..+++.+.. ...++.++
T Consensus 338 ~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~--~~d~~~~~ 413 (626)
T KOG2106|consen 338 GKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI--IEDPAECA 413 (626)
T ss_pred CCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE--ecCceeEe
Confidence 11123445678899999999999999999999999 445554443 34468999
Q ss_pred EEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 204 ~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
.|+|.| . ++.+...|...+.|.++...+. +.....+++.++|+|||.+||+
T Consensus 414 ~fhpsg-~-----va~Gt~~G~w~V~d~e~~~lv~-~~~d~~~ls~v~ysp~G~~lAv 464 (626)
T KOG2106|consen 414 DFHPSG-V-----VAVGTATGRWFVLDTETQDLVT-IHTDNEQLSVVRYSPDGAFLAV 464 (626)
T ss_pred eccCcc-e-----EEEeeccceEEEEecccceeEE-EEecCCceEEEEEcCCCCEEEE
Confidence 999999 5 6889999999999999966664 4444889999999999999985
No 155
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=1.8e-20 Score=149.37 Aligned_cols=209 Identities=12% Similarity=0.151 Sum_probs=169.1
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCC--CeEEEE
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG--DDFVCS 81 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~ 81 (261)
...|.|+.|+...-...++|+++.++ .|.+||...... ....+.+|...|+++.|..+| ..++++
T Consensus 501 esEilcLeyS~p~~~~kLLASasrdR--------lIHV~Dv~rny~-----l~qtld~HSssITsvKFa~~gln~~Misc 567 (1080)
T KOG1408|consen 501 ESEILCLEYSFPVLTNKLLASASRDR--------LIHVYDVKRNYD-----LVQTLDGHSSSITSVKFACNGLNRKMISC 567 (1080)
T ss_pred cceeEEEeecCchhhhHhhhhccCCc--------eEEEEecccccc-----hhhhhcccccceeEEEEeecCCceEEEec
Confidence 56899999977655678999999999 889999866542 245788999999999998776 678898
Q ss_pred ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC---Ccee
Q 024868 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH---KSVL 158 (261)
Q Consensus 82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---~~v~ 158 (261)
+.|..+. |+...+.....+....... ..+..+++++..|..+++++++.|+.|+||++.+++....+++.+ +...
T Consensus 568 GADksim-Fr~~qk~~~g~~f~r~t~t-~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lI 645 (1080)
T KOG1408|consen 568 GADKSIM-FRVNQKASSGRLFPRHTQT-LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLI 645 (1080)
T ss_pred cCchhhh-eehhccccCceeccccccc-cccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceE
Confidence 8888554 4443322112222111111 235678999999999999999999999999999999887776544 4577
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868 159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (261)
Q Consensus 159 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~ 233 (261)
.+...|.|.|+++...|.++.++|..+|+++.++.+|.. .|+.+.|.+|-++ +++.+.||.|.+|.+..
T Consensus 646 Kv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE-~VTG~kF~nDCkH-----lISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 646 KVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE-AVTGVKFLNDCKH-----LISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch-heeeeeecccchh-----heeecCCceEEEEECch
Confidence 888999999999999999999999999999999999877 5999999999999 68899999999999863
No 156
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=2.6e-20 Score=138.98 Aligned_cols=193 Identities=15% Similarity=0.194 Sum_probs=145.7
Q ss_pred CCCceEEEECCCCC-eEEEEecCCcEEEEEEeCCccccc--eeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEE
Q 024868 63 EGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDIN--LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (261)
Q Consensus 63 ~~~v~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~ 139 (261)
..++..+.|.++.. ++++|+.|..|++|.+........ .+.-......|...|+.+.|+|+|..+++|+.+|.+.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 45799999998766 999999999999999987654331 222223334567899999999999999999999999999
Q ss_pred Ecc--------C-----c---eEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEE
Q 024868 140 HWP--------S-----L---RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELC 203 (261)
Q Consensus 140 d~~--------~-----~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~ 203 (261)
... + . ........|...+..++|+|+++++++++.|+.+++||+..|+....+..|.. .+..+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~-yvqgv 171 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH-YVQGV 171 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc-cccee
Confidence 765 2 1 11223345667899999999999999999999999999999999998887766 49999
Q ss_pred EEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee-------------------cc----CcCeeEEEEeeCCCEEe
Q 024868 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-------------------LL----RKPASVLSISLDGKYLA 260 (261)
Q Consensus 204 ~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~-------------------~~----~~~v~~~~~s~dg~~la 260 (261)
+|.|-+++ +++-+.|...+.+.+...+.+.... .| ......++|+|||..|+
T Consensus 172 awDpl~qy-----v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llv 246 (434)
T KOG1009|consen 172 AWDPLNQY-----VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLV 246 (434)
T ss_pred ecchhhhh-----hhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEE
Confidence 99999998 5666777766666655332221111 00 12345688999999886
Q ss_pred C
Q 024868 261 M 261 (261)
Q Consensus 261 ~ 261 (261)
+
T Consensus 247 t 247 (434)
T KOG1009|consen 247 T 247 (434)
T ss_pred c
Confidence 4
No 157
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=6.3e-19 Score=139.37 Aligned_cols=222 Identities=16% Similarity=0.228 Sum_probs=172.3
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
.+.|-.++|.+ ...+.+.+.+| .|..||+.+.+. ...+....+.|.+++.+|.+..++.|++
T Consensus 69 drsIE~L~W~e----~~RLFS~g~sg--------~i~EwDl~~lk~------~~~~d~~gg~IWsiai~p~~~~l~Igcd 130 (691)
T KOG2048|consen 69 DRSIESLAWAE----GGRLFSSGLSG--------SITEWDLHTLKQ------KYNIDSNGGAIWSIAINPENTILAIGCD 130 (691)
T ss_pred CCceeeEEEcc----CCeEEeecCCc--------eEEEEecccCce------eEEecCCCcceeEEEeCCccceEEeecC
Confidence 46688899995 33455566677 899999988764 5567777889999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee----cccc-C---C
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD----EPKA-H---K 155 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~----~~~~-~---~ 155 (261)
||.++.++...+..... .......+++.+++|+|++..|+.|+.||.|++||..++..... +.+. . .
T Consensus 131 dGvl~~~s~~p~~I~~~-----r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~ 205 (691)
T KOG2048|consen 131 DGVLYDFSIGPDKITYK-----RSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPT 205 (691)
T ss_pred CceEEEEecCCceEEEE-----eecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCce
Confidence 99777777766543221 22223368999999999999999999999999999998876541 1111 1 1
Q ss_pred ceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868 156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (261)
Q Consensus 156 ~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~ 235 (261)
-|+++.|-.++ .|++|...|.|++||...+..++.+..|.. .|.+++..+++.+ +++++-|+.|..|...+.+
T Consensus 206 iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a-dVl~Lav~~~~d~-----vfsaGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 206 IVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDA-DVLALAVADNEDR-----VFSAGVDPKIIQYSLTTNK 278 (691)
T ss_pred EEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhc-ceeEEEEcCCCCe-----EEEccCCCceEEEEecCCc
Confidence 37777777555 588898899999999999999999888766 5999999999888 6889999999999887653
Q ss_pred E----EeeeeccCcCeeEEEEeeC
Q 024868 236 K----IGHKRLLRKPASVLSISLD 255 (261)
Q Consensus 236 ~----~~~~~~~~~~v~~~~~s~d 255 (261)
. ......|...+.+++..++
T Consensus 279 ~~wv~~~~r~~h~hdvrs~av~~~ 302 (691)
T KOG2048|consen 279 SEWVINSRRDLHAHDVRSMAVIEN 302 (691)
T ss_pred cceeeeccccCCcccceeeeeecc
Confidence 3 2344567778888887665
No 158
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=5.3e-20 Score=138.75 Aligned_cols=204 Identities=15% Similarity=0.211 Sum_probs=157.8
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC-CCCeEEEEecC
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTTN 84 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d 84 (261)
.|..++|+.. ..+++|+|+.|. +|..||..+++. ...+..|.+.|.+++|+| ....|++|+.|
T Consensus 245 avl~Ls~n~~--~~nVLaSgsaD~--------TV~lWD~~~g~p------~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D 308 (463)
T KOG0270|consen 245 AVLALSWNRN--FRNVLASGSADK--------TVKLWDVDTGKP------KSSITHHGKKVQTLEWHPYEPSVLLSGSYD 308 (463)
T ss_pred HHHHHHhccc--cceeEEecCCCc--------eEEEEEcCCCCc------ceehhhcCCceeEEEecCCCceEEEecccc
Confidence 3456677664 478999999999 999999998876 567788999999999999 57789999999
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCCeEEEEEccCc-eEEeeccccCCceeEEEE
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSL-RIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~ 162 (261)
+++.+.|.+..... .....-.+.|..++|.|.. ..++++..||+++-+|+++. ++++....|.++|.++++
T Consensus 309 ~~V~l~D~R~~~~s-------~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~ 381 (463)
T KOG0270|consen 309 GTVALKDCRDPSNS-------GKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSV 381 (463)
T ss_pred ceEEeeeccCcccc-------CceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEe
Confidence 99999999853321 1122235788999999965 45677779999999999975 788888899999999999
Q ss_pred cCC-CCEEEEecCCCcEEEEEccCCcEEEEEe--ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEE
Q 024868 163 SLD-SEFLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI 237 (261)
Q Consensus 163 s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~ 237 (261)
++. ..++++++.|+.|++|++...++..... ...+ ...|+++.|+-... ++.|+..+.+++||+.+...+
T Consensus 382 n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~-rl~c~~~~~~~a~~----la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 382 NIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLG-RLHCFALDPDVAFT----LAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cCCCCcceeeccccceEEEEeecCCCCccccccccccc-ceeecccCCCcceE----EEecCccceEEEeecccChhH
Confidence 884 5578899999999999997544422221 1112 35677777776653 578888889999999877654
No 159
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=1.1e-19 Score=142.91 Aligned_cols=236 Identities=13% Similarity=0.111 Sum_probs=161.9
Q ss_pred eEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcE
Q 024868 8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGC 87 (261)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 87 (261)
+.+.|.+.+....+++.+..+| .|..||.....+..+...-.....|.+.|..+.|-|-...|++++.|.++
T Consensus 53 f~~sFs~~~n~eHiLavadE~G--------~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~ 124 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDG--------GIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTI 124 (720)
T ss_pred ccccccCCCCccceEEEecCCC--------ceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCcee
Confidence 4577888887788999999999 88888877665532212224566799999999999966678999999999
Q ss_pred EEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC-CcEEEEeccCCeEEEEEccCce---------------------
Q 024868 88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLR--------------------- 145 (261)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~--------------------- 145 (261)
+.||++....... ...+.|...+.+++|.|+ ...|++|+.||.+.|||++-..
T Consensus 125 r~Wdvk~s~l~G~-----~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp 199 (720)
T KOG0321|consen 125 RPWDVKTSRLVGG-----RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP 199 (720)
T ss_pred eeeeeccceeecc-----eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence 9999998775221 234667889999999994 5678899999999999985321
Q ss_pred ------EEeeccccCCceeE---EEEcCCCCEEEEecC-CCcEEEEEccCCcEEEEE--------eec--CCCceEEEEE
Q 024868 146 ------IILDEPKAHKSVLD---MDFSLDSEFLATTST-DGSARIWKTEDGVAWTFL--------TRN--SDEKIELCRF 205 (261)
Q Consensus 146 ------~~~~~~~~~~~v~~---~~~s~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~--------~~~--~~~~v~~~~~ 205 (261)
.+.....+...|.+ +.+..|...||+++. |+.|++||++........ ..+ ....+.++..
T Consensus 200 skp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l 279 (720)
T KOG0321|consen 200 SKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL 279 (720)
T ss_pred CchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe
Confidence 00111122234555 556678889998887 999999999865432221 111 1123667777
Q ss_pred ecCCCcceEEEEEeeCCCcEEEEEECCCCeE--EeeeeccC--cCeeEEEEeeCCCEEeC
Q 024868 206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKRLLR--KPASVLSISLDGKYLAM 261 (261)
Q Consensus 206 ~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~--~~~~~~~~--~~v~~~~~s~dg~~la~ 261 (261)
...|.+ +++.+.|+.|++||+.+-.. +..+.++. ..-..-..+||+.+|+.
T Consensus 280 DssGt~-----L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~S 334 (720)
T KOG0321|consen 280 DSSGTY-----LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLS 334 (720)
T ss_pred cCCCCe-----EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEec
Confidence 778888 45566699999999986432 22222221 11122346788888763
No 160
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=1.4e-19 Score=129.88 Aligned_cols=217 Identities=13% Similarity=0.201 Sum_probs=161.5
Q ss_pred CCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC-CCeEEEEecC-------CcEEEEEEeCCccccceee
Q 024868 32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCSTTN-------GGCKLFEVYGGATDINLLA 103 (261)
Q Consensus 32 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d-------g~i~i~~~~~~~~~~~~~~ 103 (261)
..+|.+++..+|.+...+. ...+..|.+.|..++-+|- .+.|+++..+ ..+.||.+...........
T Consensus 37 K~dNqVhll~~d~e~s~l~-----skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~t 111 (370)
T KOG1007|consen 37 KEDNQVHLLRLDSEGSELL-----SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSST 111 (370)
T ss_pred CCcceeEEEEecCccchhh-----hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccch
Confidence 4568889999998877652 3456778899999999995 4555555432 2478999875543211000
Q ss_pred -eeCCCC--CCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE-eecc-----ccCCceeEEEEcC--CCCEEEEe
Q 024868 104 -KKMPPL--QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-LDEP-----KAHKSVLDMDFSL--DSEFLATT 172 (261)
Q Consensus 104 -~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~-----~~~~~v~~~~~s~--~~~~l~~~ 172 (261)
.....+ .+.+.+.|+.|.|++..+++. .|..|.+|++..+..+ ..+. .+....++-+|+| +|+.+++.
T Consensus 112 lE~v~~Ldteavg~i~cvew~Pns~klasm-~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt 190 (370)
T KOG1007|consen 112 LECVASLDTEAVGKINCVEWEPNSDKLASM-DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT 190 (370)
T ss_pred hhHhhcCCHHHhCceeeEEEcCCCCeeEEe-ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe
Confidence 001111 234689999999999999888 5889999999877652 2221 1233578889999 78888877
Q ss_pred cCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe-EEeeeeccCcCeeEEE
Q 024868 173 STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLS 251 (261)
Q Consensus 173 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~v~~~~ 251 (261)
+ |++++.||+++.++...+...++..|+.+.|+|+-+++ ++++++||.|++||.+..+ ++..+..|...|+++.
T Consensus 191 ~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~----lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VR 265 (370)
T KOG1007|consen 191 S-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHI----LVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVR 265 (370)
T ss_pred C-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEE----EEEcCCCccEEEEeccCCCccccccCCCceEEEEEE
Confidence 5 79999999999988888877777789999999998874 6999999999999998655 6778889999999999
Q ss_pred EeeCCCEE
Q 024868 252 ISLDGKYL 259 (261)
Q Consensus 252 ~s~dg~~l 259 (261)
|+|.-..|
T Consensus 266 fn~~hdqL 273 (370)
T KOG1007|consen 266 FNPEHDQL 273 (370)
T ss_pred ecCccceE
Confidence 99965444
No 161
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.8e-20 Score=155.78 Aligned_cols=209 Identities=11% Similarity=0.144 Sum_probs=161.1
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC-CCeEEEE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCS 81 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~ 81 (261)
..|+|..+.|++. ..+++|+|+.+| +|+.||....+....+- -....+.|.+++|+.. .+.|+++
T Consensus 115 h~G~V~gLDfN~~--q~nlLASGa~~g--------eI~iWDlnn~~tP~~~~----~~~~~~eI~~lsWNrkvqhILAS~ 180 (1049)
T KOG0307|consen 115 HTGPVLGLDFNPF--QGNLLASGADDG--------EILIWDLNKPETPFTPG----SQAPPSEIKCLSWNRKVSHILASG 180 (1049)
T ss_pred cCCceeeeecccc--CCceeeccCCCC--------cEEEeccCCcCCCCCCC----CCCCcccceEeccchhhhHHhhcc
Confidence 4689999999997 478999999999 99999998755322211 2224578999999874 5678899
Q ss_pred ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCC---eEEEEEccCceEEeec-cccCCc
Q 024868 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDG---HLRIMHWPSLRIILDE-PKAHKS 156 (261)
Q Consensus 82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~---~i~~~d~~~~~~~~~~-~~~~~~ 156 (261)
+.+|++.|||++..+.... .........+..++|+|+. ..+++++.|. .|.+||++.-....+. ..|...
T Consensus 181 s~sg~~~iWDlr~~~pii~-----ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~G 255 (1049)
T KOG0307|consen 181 SPSGRAVIWDLRKKKPIIK-----LSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRG 255 (1049)
T ss_pred CCCCCceeccccCCCcccc-----cccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccc
Confidence 9999999999998764222 1122223458899999965 5566665443 5999999865543334 466668
Q ss_pred eeEEEEcCCC-CEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868 157 VLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (261)
Q Consensus 157 v~~~~~s~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~ 235 (261)
|.++.|++.+ +++++++.|+.|.+|+.++++.+..+... +.++..+.|+|...-+ ++.++-||.|.||.+....
T Consensus 256 ilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~-~nW~fdv~w~pr~P~~----~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 256 ILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ-GNWCFDVQWCPRNPSV----MAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC-CcceeeeeecCCCcch----hhhheeccceeeeeeecCC
Confidence 9999999955 89999999999999999999999999874 4479999999988753 4778889999999997654
No 162
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.84 E-value=2.3e-19 Score=144.44 Aligned_cols=217 Identities=13% Similarity=0.098 Sum_probs=139.3
Q ss_pred CceeeEEEEEeeCCcceEEEEecCC-CCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSS-RASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
..++...+|+|+. ..++..+.+ +.. +|+.||..++.. ..+....+....++|+|||+.|+.+.
T Consensus 203 ~~~v~~p~wSPDG---~~la~~s~~~~~~------~i~i~dl~tg~~-------~~l~~~~g~~~~~~wSPDG~~La~~~ 266 (429)
T PRK01742 203 SQPLMSPAWSPDG---SKLAYVSFENKKS------QLVVHDLRSGAR-------KVVASFRGHNGAPAFSPDGSRLAFAS 266 (429)
T ss_pred CCccccceEcCCC---CEEEEEEecCCCc------EEEEEeCCCCce-------EEEecCCCccCceeECCCCCEEEEEE
Confidence 4578899999973 344544322 212 788899876542 11222223344789999999988764
Q ss_pred -cCCcEEEEEEe--CCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cCCeEEEEEccCceEEeeccccCCcee
Q 024868 83 -TNGGCKLFEVY--GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDEPKAHKSVL 158 (261)
Q Consensus 83 -~dg~i~i~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~v~ 158 (261)
.+|...||.++ ++.. . ....+...+..+.|+|||+.|+..+ .++...+|+++..........+.. .
T Consensus 267 ~~~g~~~Iy~~d~~~~~~--~------~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~ 336 (429)
T PRK01742 267 SKDGVLNIYVMGANGGTP--S------QLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--Y 336 (429)
T ss_pred ecCCcEEEEEEECCCCCe--E------eeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--C
Confidence 57776666544 3331 1 1112334567899999999877654 567778887653221112222222 4
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEEC--CCCeE
Q 024868 159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI--STWNK 236 (261)
Q Consensus 159 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~--~~~~~ 236 (261)
...|+|||++|+..+.++ +.+||+.+++...... .. ....+.|+|||++ ++.++.++...+|++ .+++.
T Consensus 337 ~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~~--~~~~~~~sPdG~~-----i~~~s~~g~~~~l~~~~~~G~~ 407 (429)
T PRK01742 337 SAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS-TF--LDESPSISPNGIM-----IIYSSTQGLGKVLQLVSADGRF 407 (429)
T ss_pred CccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-CC--CCCCceECCCCCE-----EEEEEcCCCceEEEEEECCCCc
Confidence 678999999998887754 6669999887643322 21 2456789999998 455555676666664 34666
Q ss_pred EeeeeccCcCeeEEEEeeC
Q 024868 237 IGHKRLLRKPASVLSISLD 255 (261)
Q Consensus 237 ~~~~~~~~~~v~~~~~s~d 255 (261)
+..+..+.+.+..++|||-
T Consensus 408 ~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 408 KARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred eEEccCCCCCCCCcccCCC
Confidence 6667777788899999984
No 163
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.84 E-value=9.5e-20 Score=140.83 Aligned_cols=176 Identities=15% Similarity=0.195 Sum_probs=138.4
Q ss_pred EeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCe
Q 024868 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH 135 (261)
Q Consensus 56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 135 (261)
+.....|.+.+.+-.|+|||.-|+++++||.|++|.-...-. ........+|+|++|.|+.+.++.+ ..+.
T Consensus 97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLR--------Stl~Q~~~~v~c~~W~p~S~~vl~c-~g~h 167 (737)
T KOG1524|consen 97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLR--------STVVQNEESIRCARWAPNSNSIVFC-QGGH 167 (737)
T ss_pred hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHH--------HHHhhcCceeEEEEECCCCCceEEe-cCCe
Confidence 556788999999999999999999999999999998765432 1122335789999999999888887 5667
Q ss_pred EEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEE
Q 024868 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (261)
Q Consensus 136 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~ 215 (261)
+.+-.+.....+.+...|.+-|.+++|+|...++++|+.|-..+|||.. |+.+..-..| +.+|++++|+|+ +. |
T Consensus 168 ~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~-ey~ITSva~npd-~~-~-- 241 (737)
T KOG1524|consen 168 ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAE-EYAITSVAFNPE-KD-Y-- 241 (737)
T ss_pred EEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChh-ccceeeeeeccc-cc-e--
Confidence 8888887777777888899999999999999999999999999999964 6666655544 457999999999 43 1
Q ss_pred EEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 216 CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 216 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
+.++. ++++ ......+.|..++||+||..++
T Consensus 242 --~v~S~-nt~R-----------~~~p~~GSifnlsWS~DGTQ~a 272 (737)
T KOG1524|consen 242 --LLWSY-NTAR-----------FSSPRVGSIFNLSWSADGTQAT 272 (737)
T ss_pred --eeeee-eeee-----------ecCCCccceEEEEEcCCCceee
Confidence 33332 2333 1223346788999999999876
No 164
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3.4e-19 Score=129.32 Aligned_cols=182 Identities=15% Similarity=0.184 Sum_probs=138.8
Q ss_pred ceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCce
Q 024868 66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR 145 (261)
Q Consensus 66 v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~ 145 (261)
..++.|++.|.+||+|..+|.+.|||+.+.... .....|..+|.+++||+||++|++++.|..+.+||+..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia-------r~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA-------RMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchh-------hhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC
Confidence 789999999999999999999999999987641 1222456799999999999999999999999999999998
Q ss_pred EEeeccccCCceeEEEEcCCCC-EEEEecCCCcEEEEEccCCcEEEEEeecC----CCceEEEEEecCCCcceEEEEEee
Q 024868 146 IILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNS----DEKIELCRFSKDGTKPFLFCTVQR 220 (261)
Q Consensus 146 ~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~v~~~~~~p~~~~~~~~~~~~~ 220 (261)
... .....++|....|+|..+ ..++.-.+..-.+-++..++.. .+.... +....+..|.+.|++ +++|
T Consensus 99 ~l~-rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~y-----IitG 171 (405)
T KOG1273|consen 99 PLK-RIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKY-----IITG 171 (405)
T ss_pred cee-EEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCE-----EEEe
Confidence 654 445678999999999543 3333334445566666543221 121111 112233458999999 7899
Q ss_pred CCCcEEEEEECCCCeEEeeeeccC-cCeeEEEEeeCCCEEeC
Q 024868 221 GDKALLAVYDISTWNKIGHKRLLR-KPASVLSISLDGKYLAM 261 (261)
Q Consensus 221 ~~d~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~s~dg~~la~ 261 (261)
...|.+.+||..+.+.+..+.... ..|.++.++..|++|++
T Consensus 172 tsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~lii 213 (405)
T KOG1273|consen 172 TSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLII 213 (405)
T ss_pred cCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEE
Confidence 999999999999999887766555 78899999999998863
No 165
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.84 E-value=9.3e-20 Score=144.43 Aligned_cols=244 Identities=14% Similarity=0.131 Sum_probs=175.1
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCc-----------eecCCe------E------EeeecCC
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS-----------VYTSPL------V------TYVFDES 62 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-----------~~~~~~------~------~~~~~~~ 62 (261)
-|.+++|.....+..++|+++.|.+. +||..-+.+.. +...+. . ...+.+|
T Consensus 193 WIrsl~f~~~~~~~~~laS~SQD~yI------RiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH 266 (764)
T KOG1063|consen 193 WIRSLAFARLGGDDLLLASSSQDRYI------RIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH 266 (764)
T ss_pred hhhhhhhhccCCCcEEEEecCCceEE------EEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence 46677787655457788999999844 66665443310 000110 0 1234599
Q ss_pred CCCceEEEECCCCCeEEEEecCCcEEEEEEeCCcc-------------------------------------cccee---
Q 024868 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT-------------------------------------DINLL--- 102 (261)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~-------------------------------------~~~~~--- 102 (261)
.+.|+++.|+|.+..|++++.|.++.+|.-....- ...+.
T Consensus 267 eDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~ 346 (764)
T KOG1063|consen 267 EDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTK 346 (764)
T ss_pred ccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEecc
Confidence 99999999999999999999999999998765421 00001
Q ss_pred -----eeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEc------------------------------------
Q 024868 103 -----AKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW------------------------------------ 141 (261)
Q Consensus 103 -----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~------------------------------------ 141 (261)
........|...|.+++|+|.|.+|++.+.|.+-+++--
T Consensus 347 d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgA 426 (764)
T KOG1063|consen 347 DKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGA 426 (764)
T ss_pred CccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecc
Confidence 111223345688999999999999999998877666521
Q ss_pred -----------------------------------------------------cCceE----------------------
Q 024868 142 -----------------------------------------------------PSLRI---------------------- 146 (261)
Q Consensus 142 -----------------------------------------------------~~~~~---------------------- 146 (261)
.++..
T Consensus 427 dEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~E 506 (764)
T KOG1063|consen 427 DEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTE 506 (764)
T ss_pred cceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChH
Confidence 00000
Q ss_pred -----------EeeccccCCceeEEEEcCCCCEEEEecCCC-----cEEEEEccCCcEEEEEeecCCCceEEEEEecCCC
Q 024868 147 -----------ILDEPKAHKSVLDMDFSLDSEFLATTSTDG-----SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210 (261)
Q Consensus 147 -----------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 210 (261)
+.++.+|.-.|++++.+|+++++|+++... .|++|+..+...+..+..|.- .|+.++|||||+
T Consensus 507 dqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsL-TVT~l~FSpdg~ 585 (764)
T KOG1063|consen 507 DQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSL-TVTRLAFSPDGR 585 (764)
T ss_pred HHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccce-EEEEEEECCCCc
Confidence 012234555899999999999999988653 599999998888888887765 599999999999
Q ss_pred cceEEEEEeeCCCcEEEEEECCCCeEE----eeeeccCcCeeEEEEeeCCCEEeC
Q 024868 211 KPFLFCTVQRGDKALLAVYDISTWNKI----GHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 211 ~~~~~~~~~~~~d~~i~~~d~~~~~~~----~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+ +++.+.|+++.+|........ .....|..-|++..|+||+.++|+
T Consensus 586 ~-----LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaT 635 (764)
T KOG1063|consen 586 Y-----LLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFAT 635 (764)
T ss_pred E-----EEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEE
Confidence 9 789999999999998544322 235567788999999999998874
No 166
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.1e-18 Score=121.10 Aligned_cols=227 Identities=12% Similarity=0.081 Sum_probs=154.6
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCc----eecCCeEEeeecCCCCCceEEEECCCCCeEEEE
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS----VYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 81 (261)
.|+.-+|+|. ..++++|...| .|..+...... ...........++|.++++.++|. ..+|+++
T Consensus 12 tvf~qa~sp~---~~~l~agn~~G--------~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~ 78 (325)
T KOG0649|consen 12 TVFAQAISPS---KQYLFAGNLFG--------DIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG 78 (325)
T ss_pred HHHHHhhCCc---ceEEEEecCCC--------eEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeec
Confidence 3556678885 66888998888 66666543211 111122344558999999999998 3456665
Q ss_pred ecCCcEEEEEEeCCccc---cceee---eeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCC
Q 024868 82 TTNGGCKLFEVYGGATD---INLLA---KKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK 155 (261)
Q Consensus 82 ~~dg~i~i~~~~~~~~~---~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 155 (261)
+ ||.|+-|........ ..++. +.......-..|+.+-..|...-+++++.|+.++-||+++++..+.+.+|.+
T Consensus 79 g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD 157 (325)
T KOG0649|consen 79 G-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD 157 (325)
T ss_pred c-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc
Confidence 4 599999988654321 11111 1111111234688999999776677777999999999999999889999999
Q ss_pred ceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC---------CceEEEEEecCCCcceEEEEEeeCCCcEE
Q 024868 156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD---------EKIELCRFSKDGTKPFLFCTVQRGDKALL 226 (261)
Q Consensus 156 ~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------~~v~~~~~~p~~~~~~~~~~~~~~~d~~i 226 (261)
.+.++.--.....+++|+.||++++||+++++++..+..... ..|.++ .-+..+ ++ ++....+
T Consensus 158 YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal--a~~edW-----lv-CGgGp~l 229 (325)
T KOG0649|consen 158 YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL--AVNEDW-----LV-CGGGPKL 229 (325)
T ss_pred eeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEE--eccCce-----EE-ecCCCce
Confidence 999998855555789999999999999999999888764332 123333 344555 23 4444579
Q ss_pred EEEECCCCeEEeeeeccCcCeeEEEEeeC
Q 024868 227 AVYDISTWNKIGHKRLLRKPASVLSISLD 255 (261)
Q Consensus 227 ~~~d~~~~~~~~~~~~~~~~v~~~~~s~d 255 (261)
.+|.+++.+....+. .+.++..+.|-.|
T Consensus 230 slwhLrsse~t~vfp-ipa~v~~v~F~~d 257 (325)
T KOG0649|consen 230 SLWHLRSSESTCVFP-IPARVHLVDFVDD 257 (325)
T ss_pred eEEeccCCCceEEEe-cccceeEeeeecc
Confidence 999999988775544 3456666666543
No 167
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.83 E-value=5.3e-19 Score=142.34 Aligned_cols=197 Identities=18% Similarity=0.209 Sum_probs=131.6
Q ss_pred eEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC---CcEEEEEEeCCccccceeeeeCCCCCCCC
Q 024868 37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAG 113 (261)
Q Consensus 37 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 113 (261)
.+++.+|.++.. ...+..|...+..++|+|||+.|+..+.+ ..|++||+.++.... .... .+
T Consensus 184 ~~i~i~d~dg~~-------~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~------l~~~--~g 248 (429)
T PRK01742 184 YEVRVADYDGFN-------QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV------VASF--RG 248 (429)
T ss_pred EEEEEECCCCCC-------ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE------EecC--CC
Confidence 378888877654 23456677889999999999999887654 369999998764311 1111 12
Q ss_pred CeEEEEEeeCCcEEEEec-cCCeEE--EEEccCceEEeeccccCCceeEEEEcCCCCEEEEec-CCCcEEEEEccCC-cE
Q 024868 114 PQKCLSFSVDGSRFAAGG-VDGHLR--IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDG-VA 188 (261)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~-~d~~i~--~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~-~~ 188 (261)
....++|+|||+.|+++. .+|... +||+.+++. ..+..+...+..+.|+|||+.|+..+ .++..+||++... ..
T Consensus 249 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~ 327 (429)
T PRK01742 249 HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG 327 (429)
T ss_pred ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 334689999999888764 577655 456655554 34444555678899999999877655 5688888887532 22
Q ss_pred EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 189 ~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
...+ .+.. ..+.|+|||++ ++..+.++ +.+||+.+++....... ....++.|+|||++|++
T Consensus 328 ~~~l-~~~~---~~~~~SpDG~~-----ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~ 388 (429)
T PRK01742 328 ASLV-GGRG---YSAQISADGKT-----LVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIY 388 (429)
T ss_pred eEEe-cCCC---CCccCCCCCCE-----EEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEE
Confidence 2223 2221 45789999998 34444454 66799998875422222 23457889999999873
No 168
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=3.8e-20 Score=145.82 Aligned_cols=170 Identities=12% Similarity=0.171 Sum_probs=133.3
Q ss_pred CCCceEEEECC-CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEE
Q 024868 63 EGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMH 140 (261)
Q Consensus 63 ~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d 140 (261)
...|+.+.|.| |.++|+++++||.|++|.+..+.........+.....|...|+++.|+| -...|++++.|-+|++||
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 45699999999 8889999999999999999887654444333333444678999999999 456889999999999999
Q ss_pred ccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCc-EEEEEeecCCCceEEEEEecCCCcceEEEEEe
Q 024868 141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (261)
Q Consensus 141 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 219 (261)
+++++...++.+|.+.|.+++|||||+.+++.+.||.+++|..++++ ++..-.+..+..-..+.|.-||+++ +.+-+.
T Consensus 707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~v-iv~Gfd 785 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIV-IVVGFD 785 (1012)
T ss_pred hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEE-EEeccc
Confidence 99999888889999999999999999999999999999999998764 3433333333334567899999983 222233
Q ss_pred eCCCcEEEEEECCC
Q 024868 220 RGDKALLAVYDIST 233 (261)
Q Consensus 220 ~~~d~~i~~~d~~~ 233 (261)
.....+|.+||..+
T Consensus 786 k~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 786 KSSERQVQMYDAQT 799 (1012)
T ss_pred ccchhhhhhhhhhh
Confidence 34456788888764
No 169
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.83 E-value=2.4e-18 Score=138.97 Aligned_cols=202 Identities=12% Similarity=0.093 Sum_probs=137.3
Q ss_pred eEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec---CCcEEEEEEeCCccccceeeeeCCCCCCCC
Q 024868 37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT---NGGCKLFEVYGGATDINLLAKKMPPLQDAG 113 (261)
Q Consensus 37 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 113 (261)
.+||.+|.++.. ...+..|...+...+|+|||+.|+..+. +..|++||+.++... . . ....+
T Consensus 182 ~~l~~~d~dg~~-------~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~--~----l--~~~~g 246 (435)
T PRK05137 182 KRLAIMDQDGAN-------VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE--L----V--GNFPG 246 (435)
T ss_pred eEEEEECCCCCC-------cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--E----e--ecCCC
Confidence 378888886655 3345667788999999999999988764 367999999876531 1 1 11234
Q ss_pred CeEEEEEeeCCcEEEEe-ccCC--eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC-CC--cEEEEEccCCc
Q 024868 114 PQKCLSFSVDGSRFAAG-GVDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGV 187 (261)
Q Consensus 114 ~v~~~~~s~~~~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~iwd~~~~~ 187 (261)
.+...+|+|||+.|+.. +.++ .|++||+.+++. ..+..+........|+|||+.|+..+. ++ .|+++|+.+++
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~ 325 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN 325 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence 56788999999887644 4444 488889877765 344444445677999999998887764 33 68888887665
Q ss_pred EEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 188 AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 188 ~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
.. .+..... .+..+.|+|||+++++ ......+..|.+||+.++... .+. ....+..+.|+|||++|+
T Consensus 326 ~~-~lt~~~~-~~~~~~~SpdG~~ia~--~~~~~~~~~i~~~d~~~~~~~-~lt-~~~~~~~p~~spDG~~i~ 392 (435)
T PRK05137 326 PR-RISFGGG-RYSTPVWSPRGDLIAF--TKQGGGQFSIGVMKPDGSGER-ILT-SGFLVEGPTWAPNGRVIM 392 (435)
T ss_pred eE-EeecCCC-cccCeEECCCCCEEEE--EEcCCCceEEEEEECCCCceE-ecc-CCCCCCCCeECCCCCEEE
Confidence 54 3333322 3667889999998421 111223357899998665432 232 233567899999999886
No 170
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.83 E-value=3.2e-18 Score=137.61 Aligned_cols=218 Identities=12% Similarity=0.064 Sum_probs=138.9
Q ss_pred CCceeeEEEEEeeCCcceEEEEec-CCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGK-SSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 81 (261)
+..++.+.+|+|+. ..++..+ ..+.. .++.++..+++. ..+....+.+..++|+|||+.|+..
T Consensus 197 ~~~~~~~p~wSPDG---~~la~~s~~~g~~------~i~i~dl~~G~~-------~~l~~~~~~~~~~~~SPDG~~La~~ 260 (429)
T PRK03629 197 SPQPLMSPAWSPDG---SKLAYVTFESGRS------ALVIQTLANGAV-------RQVASFPRHNGAPAFSPDGSKLAFA 260 (429)
T ss_pred CCCceeeeEEcCCC---CEEEEEEecCCCc------EEEEEECCCCCe-------EEccCCCCCcCCeEECCCCCEEEEE
Confidence 34578899999974 3444322 22211 788888876552 1222333445578999999988865
Q ss_pred -ecCC--cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC-C--eEEEEEccCceEEeeccccCC
Q 024868 82 -TTNG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-G--HLRIMHWPSLRIILDEPKAHK 155 (261)
Q Consensus 82 -~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~--~i~~~d~~~~~~~~~~~~~~~ 155 (261)
+.+| .|++||+.++... ....+...+....|+|||+.|+..+.+ + .|+++|+.+++.. .+.....
T Consensus 261 ~~~~g~~~I~~~d~~tg~~~--------~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~ 331 (429)
T PRK03629 261 LSKTGSLNLYVMDLASGQIR--------QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGS 331 (429)
T ss_pred EcCCCCcEEEEEECCCCCEE--------EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCC
Confidence 3344 5888898776531 111223456789999999988877643 3 4555576665442 2322333
Q ss_pred ceeEEEEcCCCCEEEEecCC---CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCC---CcEEEEE
Q 024868 156 SVLDMDFSLDSEFLATTSTD---GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD---KALLAVY 229 (261)
Q Consensus 156 ~v~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~---d~~i~~~ 229 (261)
......|+|||++|+..+.+ ..|.+||+.+++.. .+.... ......|+|||+++ +..+. ...++++
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~--~~~~p~~SpDG~~i-----~~~s~~~~~~~l~~~ 403 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTF--LDETPSIAPNGTMV-----IYSSSQGMGSVLNLV 403 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCC--CCCCceECCCCCEE-----EEEEcCCCceEEEEE
Confidence 45678999999998876543 35888999888754 333221 24567899999983 22222 2357888
Q ss_pred ECCCCeEEeeeeccCcCeeEEEEee
Q 024868 230 DISTWNKIGHKRLLRKPASVLSISL 254 (261)
Q Consensus 230 d~~~~~~~~~~~~~~~~v~~~~~s~ 254 (261)
++.. +....+..+.+.+..++|+|
T Consensus 404 ~~~G-~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 404 STDG-RFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred ECCC-CCeEECccCCCCcCCcccCC
Confidence 8854 44445666777889999997
No 171
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.83 E-value=4.8e-18 Score=136.57 Aligned_cols=202 Identities=20% Similarity=0.193 Sum_probs=133.4
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec---CCcEEEEEEeCCccccceeeeeCCCCCCCCC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT---NGGCKLFEVYGGATDINLLAKKMPPLQDAGP 114 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (261)
+||.+|.++... ..+..+...+...+|+|||+.|+..+. +..+++|++.+++.. ..... .+.
T Consensus 180 ~l~~~d~dg~~~-------~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~------~l~~~--~~~ 244 (429)
T PRK03629 180 ELRVSDYDGYNQ-------FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR------QVASF--PRH 244 (429)
T ss_pred eEEEEcCCCCCC-------EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE------EccCC--CCC
Confidence 788888776552 234456678999999999999987543 356899998776531 11111 233
Q ss_pred eEEEEEeeCCcEEEEe-ccCC--eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCC-C--cEEEEEccCCcE
Q 024868 115 QKCLSFSVDGSRFAAG-GVDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-G--SARIWKTEDGVA 188 (261)
Q Consensus 115 v~~~~~s~~~~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~--~i~iwd~~~~~~ 188 (261)
...++|+|||+.|+.. ..++ .|++||+++++.. .+..+...+....|+|||+.|+..+.+ + .|+++|+.+++.
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 4568999999988865 3344 5999999877654 344444567889999999988877654 4 455556666654
Q ss_pred EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 189 ~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
. .+..... ......|+|||++++. .........|++||+.+++.. .+.. ........|+|||++|++
T Consensus 324 ~-~lt~~~~-~~~~~~~SpDG~~Ia~--~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 324 Q-RITWEGS-QNQDADVSSDGKFMVM--VSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIY 390 (429)
T ss_pred E-EeecCCC-CccCEEECCCCCEEEE--EEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEE
Confidence 3 3332222 3567889999998321 111122356899999887654 2332 223457899999998873
No 172
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.83 E-value=1.9e-18 Score=135.98 Aligned_cols=232 Identities=12% Similarity=0.115 Sum_probs=162.6
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC-CCeEEEE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCS 81 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~ 81 (261)
..+.|+.++|.| ....++.+.+|. .+..||..+..+.. ...+.+|.+.|.+++|.|. ...|++|
T Consensus 99 H~nAifDl~wap---ge~~lVsasGDs--------T~r~Wdvk~s~l~G----~~~~~GH~~SvkS~cf~~~n~~vF~tG 163 (720)
T KOG0321|consen 99 HKNAIFDLKWAP---GESLLVSASGDS--------TIRPWDVKTSRLVG----GRLNLGHTGSVKSECFMPTNPAVFCTG 163 (720)
T ss_pred ccceeEeeccCC---CceeEEEccCCc--------eeeeeeeccceeec----ceeecccccccchhhhccCCCcceeec
Confidence 457899999999 467888888888 88999998877622 2357899999999999994 5577899
Q ss_pred ecCCcEEEEEEeCCcccc-------------------ceee-eeCCCCCCCCCeEE---EEEeeCCcEEEEecc-CCeEE
Q 024868 82 TTNGGCKLFEVYGGATDI-------------------NLLA-KKMPPLQDAGPQKC---LSFSVDGSRFAAGGV-DGHLR 137 (261)
Q Consensus 82 ~~dg~i~i~~~~~~~~~~-------------------~~~~-~~~~~~~~~~~v~~---~~~s~~~~~l~~~~~-d~~i~ 137 (261)
+.||.+.|||+.-..... +... .......+...+.+ +.+..|...||+++. |+.|+
T Consensus 164 gRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iK 243 (720)
T KOG0321|consen 164 GRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIK 243 (720)
T ss_pred cCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceE
Confidence 999999999997554100 0000 00111122334444 566788889999886 99999
Q ss_pred EEEccCceEEeec--------cccC---CceeEEEEcCCCCEEEEecCCCcEEEEEccCC--cEEEEEeecCCC--ceEE
Q 024868 138 IMHWPSLRIILDE--------PKAH---KSVLDMDFSLDSEFLATTSTDGSARIWKTEDG--VAWTFLTRNSDE--KIEL 202 (261)
Q Consensus 138 ~~d~~~~~~~~~~--------~~~~---~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~--~v~~ 202 (261)
+||+++....... ..+. -.+.++.....|.+|++.+.|+.|+.|++.+- .++..+.++... .+.
T Consensus 244 VWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vk- 322 (720)
T KOG0321|consen 244 VWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVK- 322 (720)
T ss_pred EEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeee-
Confidence 9999875543221 1221 14667777777888888888999999999853 233333332221 122
Q ss_pred EEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE-EeeeeccCcCeeEEEEeeC
Q 024868 203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK-IGHKRLLRKPASVLSISLD 255 (261)
Q Consensus 203 ~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~s~d 255 (261)
-..+||+.+ +++++.|...++|.+.+.+. ...+.+|...|.+++|.|.
T Consensus 323 s~lSpd~~~-----l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS 371 (720)
T KOG0321|consen 323 SELSPDDCS-----LLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS 371 (720)
T ss_pred eecCCCCce-----EeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence 246899998 79999999999999987664 3345677788888888774
No 173
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.83 E-value=7.9e-19 Score=135.67 Aligned_cols=206 Identities=18% Similarity=0.273 Sum_probs=146.5
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEE-----CCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV-----NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA 112 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 112 (261)
++|.|+.....-...++....+++.. ..|=+| .|.+--++.|-.-|.+.+.|...... .+++... ....+
T Consensus 145 ~lyv~~~~g~~~~~~pi~k~~y~gt~--P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~-sklfne~--r~i~k 219 (636)
T KOG2394|consen 145 ELYVYSYRGAADLSKPIDKREYKGTS--PTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEV-SKLFNEE--RLINK 219 (636)
T ss_pred eEEEEEccCcchhccchhhhcccCCC--CceecccccccCCCCcceEEeeccCceEEecchhhHH-HHhhhhc--ccccc
Confidence 45555554332223344444444332 233333 34566788888889899988866332 2212111 11224
Q ss_pred CCeEEEEEee-CCcEEEEeccCCeEEEEEccC--------------ce--------------EEeeccccCCceeEEEEc
Q 024868 113 GPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPS--------------LR--------------IILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 113 ~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~--------------~~--------------~~~~~~~~~~~v~~~~~s 163 (261)
..++++.|-| +...++++-.+|.+++||... +. ++..+....+.|...+|+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 7899999999 445666777899999997521 10 011111223468899999
Q ss_pred CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc
Q 024868 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL 243 (261)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~ 243 (261)
|||++||+.+.||.++|||..+.+.+..++...++ ..|++|||||++ +++|++|..|.||.+..++.+..-++|
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG-LLCvcWSPDGKy-----IvtGGEDDLVtVwSf~erRVVARGqGH 373 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGG-LLCVCWSPDGKY-----IVTGGEDDLVTVWSFEERRVVARGQGH 373 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHHHHHHHHhhccc-eEEEEEcCCccE-----EEecCCcceEEEEEeccceEEEecccc
Confidence 99999999999999999999998887777766664 999999999999 799999999999999999999888899
Q ss_pred CcCeeEEEEee
Q 024868 244 RKPASVLSISL 254 (261)
Q Consensus 244 ~~~v~~~~~s~ 254 (261)
...|+.++|.|
T Consensus 374 kSWVs~VaFDp 384 (636)
T KOG2394|consen 374 KSWVSVVAFDP 384 (636)
T ss_pred ccceeeEeecc
Confidence 99999999996
No 174
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.83 E-value=1.9e-17 Score=129.48 Aligned_cols=189 Identities=13% Similarity=0.202 Sum_probs=124.2
Q ss_pred CCceEEEECCCCCeEEEEec-CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cCCeEEEEEc
Q 024868 64 GDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHW 141 (261)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~ 141 (261)
+.+..++++|++++|++++. ++.+.+|+++........ .....+......++++|+++++++++ .++.|.+||+
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~----~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP----IQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTL 155 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc----eeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEE
Confidence 45778999999999887764 788999999743221111 11122234467789999999886655 6689999999
Q ss_pred cCceEEee------ccccCCceeEEEEcCCCCEEEEecC-CCcEEEEEccC--Cc--EEEEEeecC-----CCceEEEEE
Q 024868 142 PSLRIILD------EPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKTED--GV--AWTFLTRNS-----DEKIELCRF 205 (261)
Q Consensus 142 ~~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~iwd~~~--~~--~~~~~~~~~-----~~~v~~~~~ 205 (261)
.+...+.. ..........+.|+|+|++++++.. ++.|.+||++. ++ .+..+.... ......+.+
T Consensus 156 ~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~ 235 (330)
T PRK11028 156 SDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHI 235 (330)
T ss_pred CCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEE
Confidence 76432211 1112235678999999999988775 89999999973 33 233332110 112336889
Q ss_pred ecCCCcceEEEEEeeCCCcEEEEEECCCCe----EEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 206 SKDGTKPFLFCTVQRGDKALLAVYDISTWN----KIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 206 ~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+|+|+++| ++...++.|.+|++.... .+..... ......+.++|||++|++
T Consensus 236 ~pdg~~ly----v~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~v 290 (330)
T PRK11028 236 TPDGRHLY----ACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIA 290 (330)
T ss_pred CCCCCEEE----EecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEE
Confidence 99999832 333557899999986432 2222222 234568999999999874
No 175
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.83 E-value=2.4e-18 Score=138.72 Aligned_cols=244 Identities=14% Similarity=0.079 Sum_probs=173.5
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCC--CeEEE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG--DDFVC 80 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~ 80 (261)
-..+|+|++|+|.. .++++.|..+| +|..||..................|..++..+.|..+. ..+++
T Consensus 241 ~~s~v~~~~f~p~~--p~ll~gG~y~G--------qV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s 310 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFD--PNLLAGGCYNG--------QVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFS 310 (555)
T ss_pred cCCceeEEEeccCC--cceEEeeccCc--------eEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEE
Confidence 35789999999974 78999999999 99999987765421112233455688999999996643 45999
Q ss_pred EecCCcEEEEEEeCCccccceeeeeCC-----CCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEcc---Cce-----E
Q 024868 81 STTNGGCKLFEVYGGATDINLLAKKMP-----PLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWP---SLR-----I 146 (261)
Q Consensus 81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~---~~~-----~ 146 (261)
++.||.|..|+++.-..+......... .......+++++|.+ +-..+++|+.+|.|.--.-. ... .
T Consensus 311 ~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~ 390 (555)
T KOG1587|consen 311 LSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKG 390 (555)
T ss_pred EecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccc
Confidence 999999999988766543322221111 112245778999988 56789999999988873322 111 1
Q ss_pred EeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEcc-CCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcE
Q 024868 147 ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225 (261)
Q Consensus 147 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~ 225 (261)
......|.++|..+.++|=+..++..+.|..++||... ...++..+..+.. .+++++|||-..-+ ++++..||.
T Consensus 391 ~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpav----F~~~d~~G~ 465 (555)
T KOG1587|consen 391 HSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAV----FATVDGDGN 465 (555)
T ss_pred cccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceE----EEEEcCCCc
Confidence 22344566789999999966655544449999999988 6677776665555 49999999987763 477888999
Q ss_pred EEEEECCCCe--EEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 226 LAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 226 i~~~d~~~~~--~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
|.+||+.... ++............+.|+++|+.|++
T Consensus 466 l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lav 503 (555)
T KOG1587|consen 466 LDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAV 503 (555)
T ss_pred eehhhhhccccCCcccccccccccceeecCCCCcEEEE
Confidence 9999997543 34444444556677889999998874
No 176
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=8.4e-19 Score=131.62 Aligned_cols=197 Identities=16% Similarity=0.179 Sum_probs=146.9
Q ss_pred eEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEc-CCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCc
Q 024868 8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFD-PKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (261)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 86 (261)
.+++|+.+ +..+++|+.|| .+.+|+ |.... ......|...|.++.|+|||++|++.+.| .
T Consensus 148 k~vaf~~~---gs~latgg~dg--------~lRv~~~Ps~~t-------~l~e~~~~~eV~DL~FS~dgk~lasig~d-~ 208 (398)
T KOG0771|consen 148 KVVAFNGD---GSKLATGGTDG--------TLRVWEWPSMLT-------ILEEIAHHAEVKDLDFSPDGKFLASIGAD-S 208 (398)
T ss_pred eEEEEcCC---CCEeeeccccc--------eEEEEecCcchh-------hhhhHhhcCccccceeCCCCcEEEEecCC-c
Confidence 57888885 56999999999 777777 44333 33567788999999999999999999999 7
Q ss_pred EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC---c--EEEEeccCCeEEEEEccCceE-----EeeccccCCc
Q 024868 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG---S--RFAAGGVDGHLRIMHWPSLRI-----ILDEPKAHKS 156 (261)
Q Consensus 87 i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~--~l~~~~~d~~i~~~d~~~~~~-----~~~~~~~~~~ 156 (261)
.+||+.+++..... ............+.|+.|+ . .++.....+.|+.||+..... ..+....+..
T Consensus 209 ~~VW~~~~g~~~a~-----~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~s 283 (398)
T KOG0771|consen 209 ARVWSVNTGAALAR-----KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKS 283 (398)
T ss_pred eEEEEeccCchhhh-----cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCc
Confidence 99999999854221 1112334566778898877 3 333333455677766543221 1222334557
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868 157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (261)
Q Consensus 157 v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~ 233 (261)
|.+++.++||++++.|+.||.|.|++..+-+.++..+..|..-|+.+.|+||.++ +.+.+.+.+..+..+.-
T Consensus 284 iSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~-----~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 284 ISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRY-----LASVSSDNEAAVTKLAV 355 (398)
T ss_pred ceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCc-----ccccccCCceeEEEEee
Confidence 9999999999999999999999999999988888777666667999999999998 56677777787777654
No 177
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.82 E-value=1.5e-18 Score=137.62 Aligned_cols=140 Identities=14% Similarity=0.183 Sum_probs=110.2
Q ss_pred CCCCCCeEEEEEeeCCcEEEEeccC-----CeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEc
Q 024868 109 LQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKT 183 (261)
Q Consensus 109 ~~~~~~v~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~ 183 (261)
+.|.-.|++++.+|+++++|+++.. ..|++|+..+-.....+..|.-.|+.++|||||++|++.+.|.++.+|..
T Consensus 522 YGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~ 601 (764)
T KOG1063|consen 522 YGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEV 601 (764)
T ss_pred ccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeee
Confidence 3455679999999999999998744 35999998887777667777779999999999999999999999999987
Q ss_pred cCCcE----EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC--eEEee--eeccCcCeeEEEEee
Q 024868 184 EDGVA----WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW--NKIGH--KRLLRKPASVLSISL 254 (261)
Q Consensus 184 ~~~~~----~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~--~~~~~--~~~~~~~v~~~~~s~ 254 (261)
..... ....+.|.. -|+++.|+|++.+ +++++.|.+|++|..... +.+.. ...+...|+.+++.|
T Consensus 602 ~~~~~~e~~fa~~k~HtR-IIWdcsW~pde~~-----FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~ 674 (764)
T KOG1063|consen 602 QEDIKDEFRFACLKAHTR-IIWDCSWSPDEKY-----FATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLP 674 (764)
T ss_pred ecccchhhhhccccccce-EEEEcccCcccce-----eEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeec
Confidence 54321 112344444 6999999999998 699999999999999876 43332 224557788888776
No 178
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=2.7e-19 Score=135.53 Aligned_cols=195 Identities=15% Similarity=0.133 Sum_probs=147.8
Q ss_pred eecCCCCCceEEEECCCC--CeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCC
Q 024868 58 VFDESEGDPMTIAVNPSG--DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDG 134 (261)
Q Consensus 58 ~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~ 134 (261)
...-+.++|++++|+|.. +.+++|+..|+|-+||+.+.+.... .......|..+|.++.|+| +...+++.+.||
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d---~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKD---GVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccC---ceEEeccCCccccceEecCCChhheeeeccCc
Confidence 455678899999999954 5778888899999999974432111 1123345678999999999 557888999999
Q ss_pred eEEEEEccCceEE--eeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcE-EEEEeecCCCceEEEEEecCCCc
Q 024868 135 HLRIMHWPSLRII--LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTK 211 (261)
Q Consensus 135 ~i~~~d~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~ 211 (261)
+|++-|++..... .........+.++.|+.+...++++..=|...+||+++++. ...+..|.. .|.+++++|-..+
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k-KI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK-KITSVALNPVCPW 336 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc-ccceeecCCCCch
Confidence 9999999865432 22222233678899999888888888878999999997664 444555555 6999999999988
Q ss_pred ceEEEEEeeCCCcEEEEEECCCCeE----EeeeeccCcCeeEEEEeeCCCEEe
Q 024868 212 PFLFCTVQRGDKALLAVYDISTWNK----IGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 212 ~~~~~~~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
+ +++++.|++.+|||++.-.. +-....|...|.+..|||+|-.|+
T Consensus 337 ~----laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~ 385 (498)
T KOG4328|consen 337 F----LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLL 385 (498)
T ss_pred h----eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceE
Confidence 4 69999999999999985332 223456888999999999876565
No 179
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=2.2e-17 Score=119.60 Aligned_cols=214 Identities=16% Similarity=0.286 Sum_probs=150.2
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceec---CCeEEeeecCCCCCceEEEECC--CCCe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT---SPLVTYVFDESEGDPMTIAVNP--SGDD 77 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~--~~~~ 77 (261)
+++.|..+.|.+. +-+..+|+.+.|+ .+.+|......... .-.....+......|+.+.|.| -|-.
T Consensus 58 h~~Si~rV~WAhP-EfGqvvA~cS~Dr--------tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLk 128 (361)
T KOG2445|consen 58 HDGSIWRVVWAHP-EFGQVVATCSYDR--------TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLK 128 (361)
T ss_pred cCCcEEEEEecCc-cccceEEEEecCC--------ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceE
Confidence 4678899999764 4688999999999 44445442222111 1133456667788999999999 4778
Q ss_pred EEEEecCCcEEEEEEeCCccccc-eeeeeC-----CCCCCCCCeEEEEEeeC---CcEEEEeccC-----CeEEEEEccC
Q 024868 78 FVCSTTNGGCKLFEVYGGATDIN-LLAKKM-----PPLQDAGPQKCLSFSVD---GSRFAAGGVD-----GHLRIMHWPS 143 (261)
Q Consensus 78 l~~~~~dg~i~i~~~~~~~~~~~-~~~~~~-----~~~~~~~~v~~~~~s~~---~~~l~~~~~d-----~~i~~~d~~~ 143 (261)
|++++.||.++||+......... .+..++ ..-.+..+..|+.|+|. ..+|++|+.+ +.++||....
T Consensus 129 lA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e 208 (361)
T KOG2445|consen 129 LAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE 208 (361)
T ss_pred EEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC
Confidence 99999999999999865432110 011111 11224567899999983 4578888655 4788887654
Q ss_pred ce----EEeeccccCCceeEEEEcCC-C---CEEEEecCCCcEEEEEccCC--------------------cEEEEEeec
Q 024868 144 LR----IILDEPKAHKSVLDMDFSLD-S---EFLATTSTDGSARIWKTEDG--------------------VAWTFLTRN 195 (261)
Q Consensus 144 ~~----~~~~~~~~~~~v~~~~~s~~-~---~~l~~~~~d~~i~iwd~~~~--------------------~~~~~~~~~ 195 (261)
.. .+..+..+..+|++++|.|+ | ..||+++.|| |+||.++.. +.+..+..|
T Consensus 209 ~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H 287 (361)
T KOG2445|consen 209 NGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH 287 (361)
T ss_pred CcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC
Confidence 43 34455677789999999995 3 4789999999 999998731 123334445
Q ss_pred CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868 196 SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (261)
Q Consensus 196 ~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~ 232 (261)
.. .|+.+.|+-.|.. +++.+.||.+++|...
T Consensus 288 ~~-~VWrv~wNmtGti-----LsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 288 NG-EVWRVRWNMTGTI-----LSSTGDDGCVRLWKAN 318 (361)
T ss_pred CC-ceEEEEEeeeeeE-----EeecCCCceeeehhhh
Confidence 44 6999999999997 7999999999999864
No 180
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=9.1e-18 Score=135.08 Aligned_cols=200 Identities=18% Similarity=0.129 Sum_probs=129.1
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC---CcEEEEEEeCCccccceeeeeCCCCCCCCC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGP 114 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (261)
++|.+|.++.. ...+..+...+.+.+|+|||+.|+..+.+ ..|++||+.++... . .. ...+.
T Consensus 177 ~L~~~D~dG~~-------~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~-----l~--~~~g~ 241 (427)
T PRK02889 177 QLQISDADGQN-------AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-V-----VA--NFKGS 241 (427)
T ss_pred EEEEECCCCCC-------ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-E-----ee--cCCCC
Confidence 78888876544 22344567789999999999999877643 35999999877531 1 11 11234
Q ss_pred eEEEEEeeCCcEEEE-eccCCeEEEE--EccCceEEeeccccCCceeEEEEcCCCCEEEEecC-CCcEEEEEc--cCCcE
Q 024868 115 QKCLSFSVDGSRFAA-GGVDGHLRIM--HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKT--EDGVA 188 (261)
Q Consensus 115 v~~~~~s~~~~~l~~-~~~d~~i~~~--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~iwd~--~~~~~ 188 (261)
....+|+|||+.|+. .+.++...+| |+..+.. ..+..+........|+|||+.|+..+. ++...||.+ .+++.
T Consensus 242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~ 320 (427)
T PRK02889 242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGL-RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA 320 (427)
T ss_pred ccceEECCCCCEEEEEEccCCCceEEEEECCCCCc-EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce
Confidence 567899999998875 5667765555 4444443 344444444567889999998886654 456666654 44443
Q ss_pred EEEEeecCCCceEEEEEecCCCcceEEEEEeeCC--CcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD--KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 189 ~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
. .+..... ......|+|||++++ +.... +..|++||+.+++... +.. ......+.|+|||++|+.
T Consensus 321 ~-~lt~~g~-~~~~~~~SpDG~~Ia----~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~ 387 (427)
T PRK02889 321 Q-RVTFTGS-YNTSPRISPDGKLLA----YISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILY 387 (427)
T ss_pred E-EEecCCC-CcCceEECCCCCEEE----EEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEE
Confidence 2 2222222 244678999999832 22222 2379999998877543 322 233467899999998863
No 181
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=1.3e-17 Score=134.68 Aligned_cols=199 Identities=19% Similarity=0.163 Sum_probs=133.0
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC---CcEEEEEEeCCccccceeeeeCCCCCCCCC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGP 114 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (261)
+|+.+|.++.. ...+..+...+.+.+|+|||+.|+..+.+ ..|++|++.++... .... ..+.
T Consensus 185 ~l~i~D~~g~~-------~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~------~l~~--~~g~ 249 (433)
T PRK04922 185 ALQVADSDGYN-------PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE------LVAS--FRGI 249 (433)
T ss_pred EEEEECCCCCC-------ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE------Eecc--CCCC
Confidence 68888876544 22355567789999999999999987643 46999999776531 1111 1233
Q ss_pred eEEEEEeeCCcEEEEe-ccCC--eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC-CCc--EEEEEccCCcE
Q 024868 115 QKCLSFSVDGSRFAAG-GVDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGS--ARIWKTEDGVA 188 (261)
Q Consensus 115 v~~~~~s~~~~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~--i~iwd~~~~~~ 188 (261)
...++|+|||+.|+.. +.++ .|++||+.+++.. .+..+......++|+|||+.|+..+. ++. |+++|+.+++.
T Consensus 250 ~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 250 NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred ccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 4578999999987643 4444 6999999877653 34444344567899999998887664 444 66777777664
Q ss_pred EEEEeecCCCceEEEEEecCCCcceEEEEEeeCC--CcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD--KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 189 ~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
.. +..... ....++|+|||++++ +.... ...|.+||+.+++.. .+. +......+.|+|||++|+
T Consensus 329 ~~-lt~~g~-~~~~~~~SpDG~~Ia----~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~ 394 (433)
T PRK04922 329 ER-LTFQGN-YNARASVSPDGKKIA----MVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVL 394 (433)
T ss_pred EE-eecCCC-CccCEEECCCCCEEE----EEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEE
Confidence 33 322222 345789999999842 22222 337999999887754 233 223455789999999876
No 182
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.80 E-value=4.6e-18 Score=131.51 Aligned_cols=144 Identities=17% Similarity=0.226 Sum_probs=111.2
Q ss_pred CCCceEEEECCC-CCeEEEEecCCcEEEEEEeCCccc----cc---------eee--------eeCCCCCCCCCeEEEEE
Q 024868 63 EGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATD----IN---------LLA--------KKMPPLQDAGPQKCLSF 120 (261)
Q Consensus 63 ~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~----~~---------~~~--------~~~~~~~~~~~v~~~~~ 120 (261)
...|+++.|-|. ...++++-.+|.+++||..-.... .. +.. +........+.|..++|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 368999999884 345566678999999987422110 00 000 00111112467899999
Q ss_pred eeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCce
Q 024868 121 SVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKI 200 (261)
Q Consensus 121 s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v 200 (261)
+|||++||+.+.||.++|+|..+.+.+..+..-.+...|++|||||++|++|+.|.-|.||.+..++.+..-.+|.. +|
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkS-WV 377 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKS-WV 377 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccc-ce
Confidence 99999999999999999999998877655555567899999999999999999999999999999999988887765 89
Q ss_pred EEEEEec
Q 024868 201 ELCRFSK 207 (261)
Q Consensus 201 ~~~~~~p 207 (261)
..++|.|
T Consensus 378 s~VaFDp 384 (636)
T KOG2394|consen 378 SVVAFDP 384 (636)
T ss_pred eeEeecc
Confidence 9999983
No 183
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=3.1e-17 Score=132.41 Aligned_cols=222 Identities=12% Similarity=0.067 Sum_probs=140.1
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEE-E
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC-S 81 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~ 81 (261)
+..++.+.+|+|+. ..++..+..+ +.-.++.+|..++.. ..+....+....++|+|||+.|+. .
T Consensus 202 ~~~~v~~p~wSpDg---~~la~~s~~~-----~~~~l~~~dl~~g~~-------~~l~~~~g~~~~~~~SpDG~~l~~~~ 266 (433)
T PRK04922 202 SAEPILSPAWSPDG---KKLAYVSFER-----GRSAIYVQDLATGQR-------ELVASFRGINGAPSFSPDGRRLALTL 266 (433)
T ss_pred CCCccccccCCCCC---CEEEEEecCC-----CCcEEEEEECCCCCE-------EEeccCCCCccCceECCCCCEEEEEE
Confidence 34578888999863 3455443221 012788888876652 223334445568899999998864 3
Q ss_pred ecCC--cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-CC--eEEEEEccCceEEeeccccCCc
Q 024868 82 TTNG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DG--HLRIMHWPSLRIILDEPKAHKS 156 (261)
Q Consensus 82 ~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~ 156 (261)
+.+| .|++||+.++... ....+......++|+|||++|++.+. ++ .|+++++.+++... +......
T Consensus 267 s~~g~~~Iy~~d~~~g~~~--------~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~ 337 (433)
T PRK04922 267 SRDGNPEIYVMDLGSRQLT--------RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNY 337 (433)
T ss_pred eCCCCceEEEEECCCCCeE--------ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCC
Confidence 4454 5899998876531 11112233467899999998887753 44 37777776665432 2222234
Q ss_pred eeEEEEcCCCCEEEEecCCC---cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868 157 VLDMDFSLDSEFLATTSTDG---SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (261)
Q Consensus 157 v~~~~~s~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~ 233 (261)
...++|+|||++|+..+.++ .|.+||+.+++.. .+... . ....+.|+|||++++. ....+..+.|+++++..
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~-~-~~~~p~~spdG~~i~~--~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPG-S-LDESPSFAPNGSMVLY--ATREGGRGVLAAVSTDG 412 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCC-C-CCCCceECCCCCEEEE--EEecCCceEEEEEECCC
Confidence 45789999999998765432 6999999887765 33322 2 2456789999998421 12223345799999865
Q ss_pred CeEEeeeeccCcCeeEEEEee
Q 024868 234 WNKIGHKRLLRKPASVLSISL 254 (261)
Q Consensus 234 ~~~~~~~~~~~~~v~~~~~s~ 254 (261)
+ ....+..+.+.+..++|+|
T Consensus 413 ~-~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 413 R-VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred C-ceEEcccCCCCCCCCccCC
Confidence 4 3344555556778888987
No 184
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.80 E-value=3.9e-17 Score=116.84 Aligned_cols=159 Identities=15% Similarity=0.227 Sum_probs=110.6
Q ss_pred eEEEECCCCCeEEEEec----------CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEe--ccCC
Q 024868 67 MTIAVNPSGDDFVCSTT----------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG--GVDG 134 (261)
Q Consensus 67 ~~~~~~~~~~~l~~~~~----------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~d~ 134 (261)
..+.|+|+|++|++-.. -+...+|.++....... ...+...++|.+++|+|+|+.|++. ..++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~-----~i~l~~~~~I~~~~WsP~g~~favi~g~~~~ 83 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVE-----SIELKKEGPIHDVAWSPNGNEFAVIYGSMPA 83 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccc-----eeeccCCCceEEEEECcCCCEEEEEEccCCc
Confidence 35789999988765433 24566776654432111 2223345679999999999987654 3567
Q ss_pred eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC---CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868 135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (261)
Q Consensus 135 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 211 (261)
.+.+||++ ++.+..+. ...+..+.|+|+|+++++++. .|.+.+||.++.+.+.... +. .+..++|+|||++
T Consensus 84 ~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~-~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 84 KVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HS-DATDVEWSPDGRY 157 (194)
T ss_pred ccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cC-cEEEEEEcCCCCE
Confidence 89999996 55554443 456788999999999999874 3679999999888877665 23 3789999999998
Q ss_pred ceEEEEEe---eCCCcEEEEEECCCCeEEee
Q 024868 212 PFLFCTVQ---RGDKALLAVYDISTWNKIGH 239 (261)
Q Consensus 212 ~~~~~~~~---~~~d~~i~~~d~~~~~~~~~ 239 (261)
+.. ..+ -..|+.++||+.. |+.+..
T Consensus 158 ~~t--a~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 158 LAT--ATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEE--EEeccceeccccEEEEEec-CeEeEe
Confidence 321 111 1247889999985 665543
No 185
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=7.7e-17 Score=129.76 Aligned_cols=224 Identities=16% Similarity=0.133 Sum_probs=138.5
Q ss_pred CCceeeEEEEEeeCCcceEEEEecC-CCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEE-
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKS-SRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC- 80 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~- 80 (261)
...++.+.+|+|+. ..++..+. ++.. .||.+|..++.. ..+....+.+...+|+|||+.|+.
T Consensus 194 ~~~~v~~p~wSPDG---~~la~~s~~~~~~------~I~~~dl~~g~~-------~~l~~~~g~~~~~~~SPDG~~la~~ 257 (427)
T PRK02889 194 SPEPIISPAWSPDG---TKLAYVSFESKKP------VVYVHDLATGRR-------RVVANFKGSNSAPAWSPDGRTLAVA 257 (427)
T ss_pred CCCCcccceEcCCC---CEEEEEEccCCCc------EEEEEECCCCCE-------EEeecCCCCccceEECCCCCEEEEE
Confidence 35678899999963 44554432 2222 789999877653 223333455678999999998874
Q ss_pred EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-CCeEEEEEc--cCceEEeeccccCCce
Q 024868 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHW--PSLRIILDEPKAHKSV 157 (261)
Q Consensus 81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~d~--~~~~~~~~~~~~~~~v 157 (261)
.+.+|...+|.++........ ...+........|+|||+.|+..+. ++...+|.+ .+++... +.......
T Consensus 258 ~~~~g~~~Iy~~d~~~~~~~~------lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~ 330 (427)
T PRK02889 258 LSRDGNSQIYTVNADGSGLRR------LTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYN 330 (427)
T ss_pred EccCCCceEEEEECCCCCcEE------CCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCc
Confidence 566777777766432211111 1112234466889999998887653 455555544 4444322 22122334
Q ss_pred eEEEEcCCCCEEEEecCCC---cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868 158 LDMDFSLDSEFLATTSTDG---SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (261)
Q Consensus 158 ~~~~~s~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~ 234 (261)
...+|+|||++|+..+.++ .|.+||+.+++... +... . ....+.|+|||+.++. ....+....+++.++. +
T Consensus 331 ~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~-~~~~p~~spdg~~l~~--~~~~~g~~~l~~~~~~-g 404 (427)
T PRK02889 331 TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-T-RDESPSFAPNGRYILY--ATQQGGRSVLAAVSSD-G 404 (427)
T ss_pred CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-C-CccCceECCCCCEEEE--EEecCCCEEEEEEECC-C
Confidence 5688999999998776554 69999998887543 3322 2 2467899999998422 1212223457777874 5
Q ss_pred eEEeeeeccCcCeeEEEEeeC
Q 024868 235 NKIGHKRLLRKPASVLSISLD 255 (261)
Q Consensus 235 ~~~~~~~~~~~~v~~~~~s~d 255 (261)
+....+..+.+.+..++|+|-
T Consensus 405 ~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 405 RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CceEEeecCCCCCCCCccCCC
Confidence 544455556677888999873
No 186
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=3.3e-16 Score=122.44 Aligned_cols=190 Identities=9% Similarity=0.108 Sum_probs=123.1
Q ss_pred CCCceEEEECCCCCeEEEEe-cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cCCeEEEEE
Q 024868 63 EGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMH 140 (261)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d 140 (261)
.+.+..++++|++++|++++ .++.|.+|++..... .... ......+....++|+|+++++++++ .++.+.+|+
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~-l~~~----~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~ 108 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA-LTFA----AESPLPGSPTHISTDHQGRFLFSASYNANCVSVSP 108 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-eEEe----eeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEE
Confidence 45677899999999987664 468899999973221 1111 1111223457899999999888876 478999999
Q ss_pred ccCceEE---eeccccCCceeEEEEcCCCCEEEEec-CCCcEEEEEccCCcEEE-----EEeecCCCceEEEEEecCCCc
Q 024868 141 WPSLRII---LDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWT-----FLTRNSDEKIELCRFSKDGTK 211 (261)
Q Consensus 141 ~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~~~~-----~~~~~~~~~v~~~~~~p~~~~ 211 (261)
+.+.... .....+......++++|+++++++++ .++.|.+||+++...+. ......+...+.++|+|+|++
T Consensus 109 ~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~ 188 (330)
T PRK11028 109 LDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQY 188 (330)
T ss_pred ECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCE
Confidence 8643211 11122233567889999999886554 56999999998633221 111122334788999999998
Q ss_pred ceEEEEEeeCCCcEEEEEECCC--Ce--EEeeeeccC------cCeeEEEEeeCCCEEeC
Q 024868 212 PFLFCTVQRGDKALLAVYDIST--WN--KIGHKRLLR------KPASVLSISLDGKYLAM 261 (261)
Q Consensus 212 ~~~~~~~~~~~d~~i~~~d~~~--~~--~~~~~~~~~------~~v~~~~~s~dg~~la~ 261 (261)
+| ++...+++|.+||+.. ++ .+..+...+ .....+.++|||++|++
T Consensus 189 ly----v~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv 244 (330)
T PRK11028 189 AY----CVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYA 244 (330)
T ss_pred EE----EEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEE
Confidence 42 3344578999999973 32 232222211 12346889999998864
No 187
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=1.1e-17 Score=129.99 Aligned_cols=218 Identities=10% Similarity=0.097 Sum_probs=159.9
Q ss_pred EEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCC--ceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCc
Q 024868 9 CGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTT--SVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (261)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 86 (261)
.++|.|. ...+++++.++ .+-.|+.... .-.....+...+.+|.++|.|+++.++++.+++|+.||+
T Consensus 299 ~l~~~~s---ep~lit~sed~--------~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 299 ALAFHPS---EPVLITASEDG--------TLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred hhhcCCC---CCeEEEecccc--------chhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 3445443 45788888888 5544554221 111233456789999999999999999999999999999
Q ss_pred EEEEEEeCCcccccee---eeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE----------------
Q 024868 87 CKLFEVYGGATDINLL---AKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII---------------- 147 (261)
Q Consensus 87 i~i~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~---------------- 147 (261)
|+.|++.......... .-.-....|.+.+..+++|+....|++++.||++++|+.......
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDR 447 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEee
Confidence 9999876433211111 011223456788999999998889999999999999986432220
Q ss_pred ---------------------------eecc-----c---cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEE
Q 024868 148 ---------------------------LDEP-----K---AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL 192 (261)
Q Consensus 148 ---------------------------~~~~-----~---~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 192 (261)
..+. . ....+..+.++|.+.+.+++..|+.|+++|..+++++...
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~ 527 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM 527 (577)
T ss_pred ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe
Confidence 0000 0 0123566888898899999999999999999999999999
Q ss_pred eecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc
Q 024868 193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL 243 (261)
Q Consensus 193 ~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~ 243 (261)
..|... ++++++.|+|.+ +++++.|+.+++|.+.....+.....|
T Consensus 528 ~a~~~s-vtslai~~ng~~-----l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 528 VAHKDS-VTSLAIDPNGPY-----LMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred eeccce-ecceeecCCCce-----EEeecCCceeehhhccchheeeccccc
Confidence 888774 999999999998 799999999999999776655444333
No 188
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=1.3e-16 Score=128.98 Aligned_cols=222 Identities=16% Similarity=0.119 Sum_probs=141.3
Q ss_pred CCceeeEEEEEeeCCcceEEEEecC-CCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEE-E
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKS-SRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV-C 80 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~ 80 (261)
+..++.+.+|+|+. ..++..+. ++.. .|+.||..++.. ..+..+.+.+...+|+|||+.|+ +
T Consensus 200 ~~~~v~~p~wSpDG---~~lay~s~~~g~~------~i~~~dl~~g~~-------~~l~~~~g~~~~~~~SPDG~~la~~ 263 (435)
T PRK05137 200 GSSLVLTPRFSPNR---QEITYMSYANGRP------RVYLLDLETGQR-------ELVGNFPGMTFAPRFSPDGRKVVMS 263 (435)
T ss_pred CCCCeEeeEECCCC---CEEEEEEecCCCC------EEEEEECCCCcE-------EEeecCCCcccCcEECCCCCEEEEE
Confidence 35688999999974 34444332 2212 899999877652 23455666778899999999876 4
Q ss_pred EecCCc--EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-C--CeEEEEEccCceEEeeccccCC
Q 024868 81 STTNGG--CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-D--GHLRIMHWPSLRIILDEPKAHK 155 (261)
Q Consensus 81 ~~~dg~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d--~~i~~~d~~~~~~~~~~~~~~~ 155 (261)
.+.++. |++||+.++.. .....+........|+|||+.|+..+. + ..|+++|+..++.. .+.....
T Consensus 264 ~~~~g~~~Iy~~d~~~~~~--------~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~ 334 (435)
T PRK05137 264 LSQGGNTDIYTMDLRSGTT--------TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGG 334 (435)
T ss_pred EecCCCceEEEEECCCCce--------EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCC
Confidence 445554 66777766543 111122334567899999999887763 3 36888887765543 3333344
Q ss_pred ceeEEEEcCCCCEEEEecCC---CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC--cEEEEEE
Q 024868 156 SVLDMDFSLDSEFLATTSTD---GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK--ALLAVYD 230 (261)
Q Consensus 156 ~v~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d--~~i~~~d 230 (261)
.+....|+|||+.|+....+ ..|.+||+.++.. ..+... . .+..+.|+|||+.++.. ....+.. ..++++|
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~-~-~~~~p~~spDG~~i~~~-~~~~~~~~~~~L~~~d 410 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSG-F-LVEGPTWAPNGRVIMFF-RQTPGSGGAPKLYTVD 410 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCC-C-CCCCCeECCCCCEEEEE-EccCCCCCcceEEEEE
Confidence 56778999999999876543 3688888765543 334322 2 36788999999984211 1111211 4789999
Q ss_pred CCCCeEEeeeeccCcCeeEEEEeeC
Q 024868 231 ISTWNKIGHKRLLRKPASVLSISLD 255 (261)
Q Consensus 231 ~~~~~~~~~~~~~~~~v~~~~~s~d 255 (261)
+..++.. .+. ..+.+...+|+|-
T Consensus 411 l~g~~~~-~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 411 LTGRNER-EVP-TPGDASDPAWSPL 433 (435)
T ss_pred CCCCceE-Ecc-CCCCccCcccCCC
Confidence 8766543 333 3445778889873
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.78 E-value=9.8e-16 Score=113.63 Aligned_cols=159 Identities=14% Similarity=0.191 Sum_probs=124.8
Q ss_pred CCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec--cCCeEEEEE
Q 024868 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMH 140 (261)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~~~d 140 (261)
...|.++.++ .++|+++-++. |+|||+++.+....+.. ..++...+..+.+++.+.+++.-+ ..|.|.+||
T Consensus 87 pt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t----~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d 159 (391)
T KOG2110|consen 87 PTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIET----TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFD 159 (391)
T ss_pred CCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhc----cCCCccceEeeccCCCCceEEecCCCCCceEEEEE
Confidence 3568888885 45677765555 99999999876333211 112334456666666677888754 578999999
Q ss_pred ccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCc-EEEEEccCCcEEEEEeecC-CCceEEEEEecCCCcceEEEEE
Q 024868 141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGS-ARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTV 218 (261)
Q Consensus 141 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~~~~~ 218 (261)
..+-+....+..|.+.+-+++|+++|.+||++++.|+ ||||.+.+|+.+.++.... ...|.+++|+|++++ +.
T Consensus 160 ~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~-----L~ 234 (391)
T KOG2110|consen 160 TINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF-----LA 234 (391)
T ss_pred cccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe-----EE
Confidence 9999988888889999999999999999999999886 8999999999999887543 235889999999998 68
Q ss_pred eeCCCcEEEEEECCC
Q 024868 219 QRGDKALLAVYDIST 233 (261)
Q Consensus 219 ~~~~d~~i~~~d~~~ 233 (261)
..++.++|++|.+++
T Consensus 235 ~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 235 ASSNTETVHIFKLEK 249 (391)
T ss_pred EecCCCeEEEEEecc
Confidence 888889999999875
No 190
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=2.7e-17 Score=127.52 Aligned_cols=167 Identities=12% Similarity=0.126 Sum_probs=132.4
Q ss_pred CeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCC
Q 024868 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK 155 (261)
Q Consensus 76 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 155 (261)
..++.++.||.+.+.+-...-. .....|.+.+.+-.|+|||.-|++++.||.|++|. ++|.....+.....
T Consensus 76 d~~~i~s~DGkf~il~k~~rVE--------~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~ 146 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARVE--------RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEE 146 (737)
T ss_pred ceEEEEcCCceEEEecccchhh--------hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCc
Confidence 4678888999998887654332 23334678899999999999999999999999998 56655434444456
Q ss_pred ceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868 156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (261)
Q Consensus 156 ~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~ 235 (261)
+|+|++|.|+.+.++.+- .+.+.|=.+.....+-.+..|.+ -|.++.|+|.+.. ++++++|-..++||.. |.
T Consensus 147 ~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~l-----I~sgGED~kfKvWD~~-G~ 218 (737)
T KOG1524|consen 147 SIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNI-----IASGGEDFRFKIWDAQ-GA 218 (737)
T ss_pred eeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCc-EEEEeecCccccc-----eeecCCceeEEeeccc-Cc
Confidence 899999999887666653 46788878776666677777765 6999999999998 7999999999999975 56
Q ss_pred EEeeeeccCcCeeEEEEeeCCCEE
Q 024868 236 KIGHKRLLRKPASVLSISLDGKYL 259 (261)
Q Consensus 236 ~~~~~~~~~~~v~~~~~s~dg~~l 259 (261)
.+..-..|+.+|++++|.||..|+
T Consensus 219 ~Lf~S~~~ey~ITSva~npd~~~~ 242 (737)
T KOG1524|consen 219 NLFTSAAEEYAITSVAFNPEKDYL 242 (737)
T ss_pred ccccCChhccceeeeeecccccee
Confidence 666677899999999999995554
No 191
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.77 E-value=2e-17 Score=130.78 Aligned_cols=203 Identities=13% Similarity=0.166 Sum_probs=147.5
Q ss_pred EeeecCCCCCceEEEECC-CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC
Q 024868 56 TYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (261)
Q Consensus 56 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 134 (261)
.-.+.+|.+.|+.+.|+| +..+|++++.|..++||.+..+.. ..+...+...-...-.+.++.|+|...-|+..+..|
T Consensus 72 i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~-q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g 150 (1012)
T KOG1445|consen 72 IGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHS-QKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG 150 (1012)
T ss_pred cceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcc-cccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence 446788999999999999 555789999999999999984432 221111122222245678999999766666666899
Q ss_pred eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccC-CcEEEEEeecCCCceEEEEEecCCCcce
Q 024868 135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPF 213 (261)
Q Consensus 135 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 213 (261)
.+++||+.+++.+....+|...|.+..|+.||.+|++++.|.+|+|||.+. +++++....|.+..-..+.|--+-..+
T Consensus 151 ~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl- 229 (1012)
T KOG1445|consen 151 SVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL- 229 (1012)
T ss_pred eEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh-
Confidence 999999999999988888889999999999999999999999999999984 678888887776555567776554441
Q ss_pred EEEEEeeCCCcEEEEEECCCCe-EEeeeec-cCcCeeEEEEeeCCCEEe
Q 024868 214 LFCTVQRGDKALLAVYDISTWN-KIGHKRL-LRKPASVLSISLDGKYLA 260 (261)
Q Consensus 214 ~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~-~~~~v~~~~~s~dg~~la 260 (261)
+.+-+....-..+++||.+... .++++.. ....+.-.-+.||.++|.
T Consensus 230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llf 278 (1012)
T KOG1445|consen 230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLF 278 (1012)
T ss_pred hhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEE
Confidence 1112222344689999998654 3333332 223455566778777654
No 192
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.6e-17 Score=119.96 Aligned_cols=194 Identities=15% Similarity=0.239 Sum_probs=142.0
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC--CCCeEEEEecCCcEEEEEEeCCc
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCSTTNGGCKLFEVYGGA 96 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~~~~~~~ 96 (261)
...+|++-+.+ .+..||..++.. ...++++...+..+.|.. ..+.+.+++.||+|++||++...
T Consensus 40 e~~vav~lSng--------sv~lyd~~tg~~------l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~ 105 (376)
T KOG1188|consen 40 ETAVAVSLSNG--------SVRLYDKGTGQL------LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQA 105 (376)
T ss_pred ceeEEEEecCC--------eEEEEeccchhh------hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecch
Confidence 35688888888 788888887665 456888888999999976 46678999999999999999876
Q ss_pred cccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec----cCCeEEEEEccCceE-Eeecc-ccCCceeEEEEcC-CCCEE
Q 024868 97 TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG----VDGHLRIMHWPSLRI-ILDEP-KAHKSVLDMDFSL-DSEFL 169 (261)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~d~~i~~~d~~~~~~-~~~~~-~~~~~v~~~~~s~-~~~~l 169 (261)
......... ....+..+++.+..++.+++|. .+-.+.+||++..+. +..+. .|+..|++++|+| +.++|
T Consensus 106 e~a~~~~~~----~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlL 181 (376)
T KOG1188|consen 106 ESARISWTQ----QSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLL 181 (376)
T ss_pred hhhheeccC----CCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeE
Confidence 533322111 1124667777777778888875 466799999998776 44333 4667899999999 67899
Q ss_pred EEecCCCcEEEEEccCCc----EEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868 170 ATTSTDGSARIWKTEDGV----AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (261)
Q Consensus 170 ~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~ 236 (261)
++|+.||-|.+||++... +..++. + ...|..+.|..++-.. +..-+...+..+|+++.+..
T Consensus 182 lSGSvDGLvnlfD~~~d~EeDaL~~viN-~-~sSI~~igw~~~~ykr----I~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 182 LSGSVDGLVNLFDTKKDNEEDALLHVIN-H-GSSIHLIGWLSKKYKR----IMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred EeecccceEEeeecCCCcchhhHHHhhc-c-cceeeeeeeecCCcce----EEEEEccCceeEEEccCCCh
Confidence 999999999999997542 222222 2 3359999999888211 24445667899999987764
No 193
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=4e-16 Score=125.13 Aligned_cols=229 Identities=16% Similarity=0.117 Sum_probs=139.1
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
.+++..-+|+|+.....++.+...++.. .||..+..++.. ..+....+.....+|+|||+.|+..+.
T Consensus 184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~------~I~~~~l~~g~~-------~~lt~~~g~~~~p~wSPDG~~Laf~s~ 250 (428)
T PRK01029 184 HSLSITPTWMHIGSGFPYLYVSYKLGVP------KIFLGSLENPAG-------KKILALQGNQLMPTFSPRKKLLAFISD 250 (428)
T ss_pred CCCcccceEccCCCceEEEEEEccCCCc------eEEEEECCCCCc-------eEeecCCCCccceEECCCCCEEEEEEC
Confidence 3456667899985333333333333323 889998877652 223334455667899999999887653
Q ss_pred -CC--cEEE--EEEeCCc--cccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cCCe--EEEEEccC-ceEEeeccc
Q 024868 84 -NG--GCKL--FEVYGGA--TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGH--LRIMHWPS-LRIILDEPK 152 (261)
Q Consensus 84 -dg--~i~i--~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~--i~~~d~~~-~~~~~~~~~ 152 (261)
+| .+++ |++..+. ....+.. ..........|+|||+.|+..+ .+|. |+++++.. +.....+..
T Consensus 251 ~~g~~di~~~~~~~~~g~~g~~~~lt~------~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~ 324 (428)
T PRK01029 251 RYGNPDLFIQSFSLETGAIGKPRRLLN------EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK 324 (428)
T ss_pred CCCCcceeEEEeecccCCCCcceEeec------CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc
Confidence 23 3333 5655431 1111110 0112345689999999888765 4564 44445432 222233333
Q ss_pred cCCceeEEEEcCCCCEEEEecCC---CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEE
Q 024868 153 AHKSVLDMDFSLDSEFLATTSTD---GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY 229 (261)
Q Consensus 153 ~~~~v~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~ 229 (261)
....+....|||||+.|+..+.+ ..|.+||+.+++.... ... ...+..+.|+|||+.++. .........|+++
T Consensus 325 ~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~-~~~~~~p~wSpDG~~L~f--~~~~~g~~~L~~v 400 (428)
T PRK01029 325 KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL-TTS-PENKESPSWAIDSLHLVY--SAGNSNESELYLI 400 (428)
T ss_pred CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc-cCC-CCCccceEECCCCCEEEE--EECCCCCceEEEE
Confidence 34467789999999998876543 4699999998876443 322 224678999999997421 2223345689999
Q ss_pred ECCCCeEEeeeeccCcCeeEEEEeeCC
Q 024868 230 DISTWNKIGHKRLLRKPASVLSISLDG 256 (261)
Q Consensus 230 d~~~~~~~~~~~~~~~~v~~~~~s~dg 256 (261)
|+.+++... +....+.+...+|+|-.
T Consensus 401 dl~~g~~~~-Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 401 SLITKKTRK-IVIGSGEKRFPSWGAFP 426 (428)
T ss_pred ECCCCCEEE-eecCCCcccCceecCCC
Confidence 998876543 33345567889999854
No 194
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.77 E-value=2.7e-17 Score=119.70 Aligned_cols=190 Identities=11% Similarity=0.050 Sum_probs=146.3
Q ss_pred CCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEc
Q 024868 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (261)
Q Consensus 62 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~ 141 (261)
-..+|+|.+|++|+..+|.+-....|.||.......... ......|...|+.++|+|..+.|++++.|..-++|..
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~----~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEP----AHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCcee----ceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 347899999999999999999999999999987763111 1223345688999999999999999999999999998
Q ss_pred cCc---eEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEE---EEEeecCCCceEEEEEecCCCcceEE
Q 024868 142 PSL---RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW---TFLTRNSDEKIELCRFSKDGTKPFLF 215 (261)
Q Consensus 142 ~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~p~~~~~~~~ 215 (261)
..+ ++...+..++...+++.|+|.++.+|+|+....|.||-++..+-- +.+.......|.++.|+|++-.
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL---- 160 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL---- 160 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce----
Confidence 443 334456677889999999999999999999999999988654322 1122223345899999999987
Q ss_pred EEEeeCCCcEEEEEECC-----C-------------CeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 216 CTVQRGDKALLAVYDIS-----T-------------WNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 216 ~~~~~~~d~~i~~~d~~-----~-------------~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
+++|+.|+..++|..- . |+++.+.....+.+..+.|+|+|..||
T Consensus 161 -laaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~la 222 (361)
T KOG1523|consen 161 -LAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLA 222 (361)
T ss_pred -ecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEee
Confidence 7999999999998742 1 112222334457899999999999886
No 195
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=3e-18 Score=138.83 Aligned_cols=223 Identities=16% Similarity=0.170 Sum_probs=164.3
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
..|||+.|... ..++++|+.+. .+.+|..++..+ .....+|.+.++.++.+.+..++++++.|
T Consensus 191 naVyca~fDrt---g~~Iitgsdd~--------lvKiwS~et~~~------lAs~rGhs~ditdlavs~~n~~iaaaS~D 253 (1113)
T KOG0644|consen 191 NAVYCAIFDRT---GRYIITGSDDR--------LVKIWSMETARC------LASCRGHSGDITDLAVSSNNTMIAAASND 253 (1113)
T ss_pred hheeeeeeccc---cceEeecCccc--------eeeeeeccchhh------hccCCCCccccchhccchhhhhhhhcccC
Confidence 46999999884 77899999988 666666666665 55789999999999999999999999999
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee----ccccCC-----
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD----EPKAHK----- 155 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~----~~~~~~----- 155 (261)
..|++|.+..+... .....|.+.|++++|+|-. +.+.||++++||.+-...+.. ......
T Consensus 254 ~vIrvWrl~~~~pv-------svLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~ 322 (1113)
T KOG0644|consen 254 KVIRVWRLPDGAPV-------SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSI 322 (1113)
T ss_pred ceEEEEecCCCchH-------HHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeee
Confidence 99999999988751 2234567999999999954 667999999999861111000 000001
Q ss_pred ---------------------ceeEEEEcCCCCEEEEec-----------CCCcEEEEEccCCcEEEEEeecCCCceEEE
Q 024868 156 ---------------------SVLDMDFSLDSEFLATTS-----------TDGSARIWKTEDGVAWTFLTRNSDEKIELC 203 (261)
Q Consensus 156 ---------------------~v~~~~~s~~~~~l~~~~-----------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~ 203 (261)
....++|....-.+++.+ .+-.+++|++.+|+..+.+.+|.. .+..+
T Consensus 323 ~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd-~~yvL 401 (1113)
T KOG0644|consen 323 LFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD-EVYVL 401 (1113)
T ss_pred eccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc-ceeee
Confidence 122233332222333332 234577888888888888777766 58999
Q ss_pred EEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 204 ~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
.++|-+..+ ..+++.||...|||+-.|.+++........+..-+||+||+.++
T Consensus 402 d~Hpfn~ri----~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~ 454 (1113)
T KOG0644|consen 402 DVHPFNPRI----AMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIA 454 (1113)
T ss_pred eecCCCcHh----hhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEe
Confidence 999988874 57889999999999999888776665567788899999998776
No 196
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=4e-16 Score=126.26 Aligned_cols=201 Identities=15% Similarity=0.088 Sum_probs=131.7
Q ss_pred ceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC---CcEEEEEEeCCccccceeeeeCCCCCCC
Q 024868 36 VLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDA 112 (261)
Q Consensus 36 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~ 112 (261)
..+++..|.++.. ...+..+...+...+|+|||+.|+..+.+ ..|++|++.++.... .. ...
T Consensus 178 ~~~l~~~d~~g~~-------~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~------l~--~~~ 242 (430)
T PRK00178 178 RYTLQRSDYDGAR-------AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ------IT--NFE 242 (430)
T ss_pred ceEEEEECCCCCC-------ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE------cc--CCC
Confidence 3478888887654 22344566788999999999999876543 368889998765311 11 112
Q ss_pred CCeEEEEEeeCCcEEEEe-ccCC--eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC-CC--cEEEEEccCC
Q 024868 113 GPQKCLSFSVDGSRFAAG-GVDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDG 186 (261)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~iwd~~~~ 186 (261)
+......|+|||+.|+.. ..++ .|+++|+.+++.. .+..+........|+|||+.++..+. ++ .|+++|+.++
T Consensus 243 g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 243 GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 344568999999988754 3444 6888899877653 34444445667899999998876654 33 5777888777
Q ss_pred cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCC--CcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 187 VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD--KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 187 ~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
+...... ... ......|+|||++++ +.... ...|.+||+.+++... +.. ........|+|||++|+
T Consensus 322 ~~~~lt~-~~~-~~~~~~~Spdg~~i~----~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~ 389 (430)
T PRK00178 322 RAERVTF-VGN-YNARPRLSADGKTLV----MVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLI 389 (430)
T ss_pred CEEEeec-CCC-CccceEECCCCCEEE----EEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEE
Confidence 7543322 222 244678999999842 22222 2368999998876532 222 22334678999999886
No 197
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.77 E-value=3.7e-15 Score=119.92 Aligned_cols=219 Identities=21% Similarity=0.333 Sum_probs=158.0
Q ss_pred eeeEEEEEeeCCcceEEEE-ecCCCCCCCCCceEEEEEcCCC-CceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 6 TVTCGSWIKRPENVNLVVL-GKSSRASSSPSVLEIFSFDPKT-TSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
++..+.+. .+....+++. +..++ .+..|+... ... ...+..|...|..++|+|+++.++.++.
T Consensus 111 ~~~~~~~~-~~~~~~~~~~~~~~d~--------~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 175 (466)
T COG2319 111 SVSKLALS-SPDGNSILLASSSLDG--------TVKLWDLSTPGKL------IRTLEGHSESVTSLAFSPDGKLLASGSS 175 (466)
T ss_pred ceeeEEEE-CCCcceEEeccCCCCc--------cEEEEEecCCCeE------EEEEecCcccEEEEEECCCCCEEEecCC
Confidence 45555553 3333323333 33355 666777665 222 5568889999999999999998888875
Q ss_pred -CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCc-EEEEeccCCeEEEEEccCceEEe-eccccCCceeEE
Q 024868 84 -NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPSLRIIL-DEPKAHKSVLDM 160 (261)
Q Consensus 84 -dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~v~~~ 160 (261)
++.+++|+....... .....|...+.+++|+|++. .+++++.|+.+++||...+.... ....+.... ..
T Consensus 176 ~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~ 247 (466)
T COG2319 176 LDGTIKLWDLRTGKPL-------STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VS 247 (466)
T ss_pred CCCceEEEEcCCCceE-------EeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eE
Confidence 999999999874321 11112578899999999998 55555899999999988776665 355555554 33
Q ss_pred EEcCCCCEEEEecCCCcEEEEEccCCcE-EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868 161 DFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (261)
Q Consensus 161 ~~s~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~ 239 (261)
.|+|++.++++++.|+.+++|+...... ...+..| ...+.++.|+|++.. +++++.|+.+.+||..+......
T Consensus 248 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-----~~~~~~d~~~~~~~~~~~~~~~~ 321 (466)
T COG2319 248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH-SSSVLSVAFSPDGKL-----LASGSSDGTVRLWDLETGKLLSS 321 (466)
T ss_pred eECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC-CccEEEEEECCCCCE-----EEEeeCCCcEEEEEcCCCceEEE
Confidence 8999998899999999999999987664 4444334 457999999997776 35577778899999988876655
Q ss_pred ee--ccCcCeeEEEEe
Q 024868 240 KR--LLRKPASVLSIS 253 (261)
Q Consensus 240 ~~--~~~~~v~~~~~s 253 (261)
.. .+...+..+.|.
T Consensus 322 ~~~~~~~~~~~~~~~~ 337 (466)
T COG2319 322 LTLKGHEGPVSSLSFS 337 (466)
T ss_pred eeecccCCceEEEEEC
Confidence 54 566668888883
No 198
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.77 E-value=1.7e-15 Score=121.88 Aligned_cols=227 Identities=21% Similarity=0.341 Sum_probs=165.2
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCC-CCceEEEE-CCCCC-eEEE
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAV-NPSGD-DFVC 80 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~~~-~l~~ 80 (261)
...+.++.+.+. ...++.++.++ .+..|+..... .....+..+. ..+..+.+ ++++. .++.
T Consensus 65 ~~~i~~~~~~~~---~~~~~~~~~d~--------~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (466)
T COG2319 65 EDSITSIAFSPD---GELLLSGSSDG--------TIKLWDLDNGE-----KLIKSLEGLHDSSVSKLALSSPDGNSILLA 128 (466)
T ss_pred cceEEEEEECCC---CcEEEEecCCC--------cEEEEEcCCCc-----eeEEEEeccCCCceeeEEEECCCcceEEec
Confidence 456777777764 45666666666 66666665543 0122343322 36777777 88887 4554
Q ss_pred Eec-CCcEEEEEEeC-CccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-CCeEEEEEccCceEEeeccccCCce
Q 024868 81 STT-NGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILDEPKAHKSV 157 (261)
Q Consensus 81 ~~~-dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~v 157 (261)
.+. |+.+.+|+... ... ......|...+..++|+|+++.++.++. ++.+++|++..+........|...+
T Consensus 129 ~~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 201 (466)
T COG2319 129 SSSLDGTVKLWDLSTPGKL-------IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV 201 (466)
T ss_pred cCCCCccEEEEEecCCCeE-------EEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCce
Confidence 444 89999999987 222 1223345678889999999998888875 9999999998877766666677899
Q ss_pred eEEEEcCCCC-EEEEecCCCcEEEEEccCCcEEE-EEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868 158 LDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (261)
Q Consensus 158 ~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~ 235 (261)
.+++|+|++. .+++++.|+.+++||...+.... .+..+... . -..|+|++.. +++++.|+.+++||++...
T Consensus 202 ~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~-----~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS-V-VSSFSPDGSL-----LASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred EEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc-e-eEeECCCCCE-----EEEecCCCcEEEeeecCCC
Confidence 9999999998 55555899999999998888777 56655543 3 2279999955 4689999999999998766
Q ss_pred E-EeeeeccCcCeeEEEEeeCCCEEe
Q 024868 236 K-IGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 236 ~-~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
. +.....|...+.++.|+|++..++
T Consensus 275 ~~~~~~~~~~~~v~~~~~~~~~~~~~ 300 (466)
T COG2319 275 SLLRTLSGHSSSVLSVAFSPDGKLLA 300 (466)
T ss_pred cEEEEEecCCccEEEEEECCCCCEEE
Confidence 4 433456678999999999887765
No 199
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.5e-16 Score=115.96 Aligned_cols=190 Identities=17% Similarity=0.212 Sum_probs=136.3
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCcc-
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT- 97 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~- 97 (261)
..++++++.+. .|..|+..+..+ ..+......-+..+.||+|+++++++..-.+++|..--.+.
T Consensus 199 ~k~imsas~dt--------~i~lw~lkGq~L-------~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG 263 (420)
T KOG2096|consen 199 AKYIMSASLDT--------KICLWDLKGQLL-------QSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG 263 (420)
T ss_pred ceEEEEecCCC--------cEEEEecCCcee-------eeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCc
Confidence 55777777777 888899885543 12222333456788999999999999988899999843221
Q ss_pred ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE-------Eeec--c--ccCCceeEEEEcCCC
Q 024868 98 DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-------ILDE--P--KAHKSVLDMDFSLDS 166 (261)
Q Consensus 98 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-------~~~~--~--~~~~~v~~~~~s~~~ 166 (261)
..+-.......-.|...|..++||++.+.+++.+.||+.++||++-.-. +... + ...+....++++|+|
T Consensus 264 ~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g 343 (420)
T KOG2096|consen 264 TFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG 343 (420)
T ss_pred chhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC
Confidence 1122222234445678999999999999999999999999999752211 1111 1 112234589999999
Q ss_pred CEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEE
Q 024868 167 EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD 230 (261)
Q Consensus 167 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d 230 (261)
+.|+.+. ...+++|..++|+....++.-+...|.+++|+++|++ +++++ |..++++.
T Consensus 344 ~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~-----~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 344 DSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKY-----IATCG-DRYVRVIR 400 (420)
T ss_pred cEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcE-----Eeeec-ceeeeeec
Confidence 9888765 4679999999998887777656667999999999998 45555 56777776
No 200
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.1e-17 Score=130.91 Aligned_cols=199 Identities=15% Similarity=0.170 Sum_probs=153.9
Q ss_pred EEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCcccccee--------------------------------
Q 024868 55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLL-------------------------------- 102 (261)
Q Consensus 55 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-------------------------------- 102 (261)
....+.+|++.|.++...|.|.+|++|+.||+|+||.+.++.+.....
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 346789999999999999999999999999999999999987611000
Q ss_pred -------------------------------e---------eeCCCCCCCCCeEEEEEeeCCcEEEEecc---CCeEEEE
Q 024868 103 -------------------------------A---------KKMPPLQDAGPQKCLSFSVDGSRFAAGGV---DGHLRIM 139 (261)
Q Consensus 103 -------------------------------~---------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~~~ 139 (261)
. .....+.+...|..+.|+..|.+|++... ...|.|.
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence 0 00012234567889999999999998764 3468888
Q ss_pred EccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEe
Q 024868 140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (261)
Q Consensus 140 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 219 (261)
++.......-+...++.+.++.|+|...+|+.++. ..|+|||+...+.++.+..... .+..++.+|.|.. ++.
T Consensus 552 QLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~k-wiS~msihp~GDn-----li~ 624 (733)
T KOG0650|consen 552 QLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSK-WISSMSIHPNGDN-----LIL 624 (733)
T ss_pred ecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCe-eeeeeeecCCCCe-----EEE
Confidence 88776655445556678999999999888888765 7799999998877777665444 6999999999998 688
Q ss_pred eCCCcEEEEEECCCC-eEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 220 RGDKALLAVYDISTW-NKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 220 ~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
++.|+.+..||+.-. ++.+.+..|...+.+++|++.-.++|
T Consensus 625 gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfa 666 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFA 666 (733)
T ss_pred ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceee
Confidence 999999999999754 45556677877888888776555444
No 201
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.76 E-value=1.5e-18 Score=132.00 Aligned_cols=216 Identities=13% Similarity=0.161 Sum_probs=177.6
Q ss_pred eEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcE
Q 024868 8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGC 87 (261)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 87 (261)
|.+.+.. ++..++.||..| ++-.+|..+..+ ...+. -...|.++.|-.+.+++|++ ....+
T Consensus 133 Y~~~ytr---nGrhlllgGrKG--------HlAa~Dw~t~~L------~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~ 193 (545)
T KOG1272|consen 133 YHLDYTR---NGRHLLLGGRKG--------HLAAFDWVTKKL------HFEIN-VMETVRDVTFLHNEQFFAVA-QKKYV 193 (545)
T ss_pred eeeeecC---CccEEEecCCcc--------ceeeeeccccee------eeeee-hhhhhhhhhhhcchHHHHhh-hhceE
Confidence 4455655 367888999999 899999888876 22222 23578999999888888876 56679
Q ss_pred EEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCC
Q 024868 88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE 167 (261)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 167 (261)
+|||-..-+ +..+.....|..+.|-|---+|++++..|.+..-|+.+|+.+..+....+.+..+.-+|-+.
T Consensus 194 yvYD~~GtE---------lHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na 264 (545)
T KOG1272|consen 194 YVYDNNGTE---------LHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA 264 (545)
T ss_pred EEecCCCcE---------EeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc
Confidence 999987654 44555567889999999888889999999999999999999888888888899999999999
Q ss_pred EEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCe
Q 024868 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPA 247 (261)
Q Consensus 168 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v 247 (261)
.+-+|..+|+|.+|.....+++..+..|.+ +|.++++.++|+| +++.+.|..++|||++....+.+... ..+.
T Consensus 265 Vih~GhsnGtVSlWSP~skePLvKiLcH~g-~V~siAv~~~G~Y-----MaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a 337 (545)
T KOG1272|consen 265 VIHLGHSNGTVSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRY-----MATTGLDRKVKIWDLRNFYQLHTYRT-PHPA 337 (545)
T ss_pred eEEEcCCCceEEecCCCCcchHHHHHhcCC-CcceEEECCCCcE-----EeecccccceeEeeeccccccceeec-CCCc
Confidence 999999999999999999998888887766 6999999999999 79999999999999998876655554 4566
Q ss_pred eEEEEeeCCCE
Q 024868 248 SVLSISLDGKY 258 (261)
Q Consensus 248 ~~~~~s~dg~~ 258 (261)
..+++|..|-.
T Consensus 338 ~~ls~SqkglL 348 (545)
T KOG1272|consen 338 SNLSLSQKGLL 348 (545)
T ss_pred cccccccccce
Confidence 77888776643
No 202
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.76 E-value=3.6e-16 Score=126.23 Aligned_cols=199 Identities=17% Similarity=0.148 Sum_probs=131.5
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC---CcEEEEEEeCCccccceeeeeCCCCCCCCC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGP 114 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (261)
.|+.+|.++.. ...+..+...+...+|+|||++|+.+..+ ..|++||+.++.... .....+.
T Consensus 171 ~l~~~d~~g~~-------~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------~~~~~~~ 235 (417)
T TIGR02800 171 ELQVADYDGAN-------PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------VASFPGM 235 (417)
T ss_pred eEEEEcCCCCC-------CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------eecCCCC
Confidence 67888776544 22344566678899999999999887654 479999998764311 1112345
Q ss_pred eEEEEEeeCCcEEEEe-ccCC--eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC-CC--cEEEEEccCCcE
Q 024868 115 QKCLSFSVDGSRFAAG-GVDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVA 188 (261)
Q Consensus 115 v~~~~~s~~~~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~iwd~~~~~~ 188 (261)
+..++|+|||+.|+.. +.++ .|++||+.+++.. .+..+........|+|||+.|+..+. ++ .|+++|+.+++.
T Consensus 236 ~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~ 314 (417)
T TIGR02800 236 NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV 314 (417)
T ss_pred ccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 5678999999877654 3333 5889998876543 33334444557899999998876654 33 588888877765
Q ss_pred EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC---cEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK---ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 189 ~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
. .+..+.. ....+.|+|+|+++ +....+ ..|.+||+.++... .+.. ......+.|+|||++|++
T Consensus 315 ~-~l~~~~~-~~~~~~~spdg~~i-----~~~~~~~~~~~i~~~d~~~~~~~-~l~~-~~~~~~p~~spdg~~l~~ 381 (417)
T TIGR02800 315 R-RLTFRGG-YNASPSWSPDGDLI-----AFVHREGGGFNIAVMDLDGGGER-VLTD-TGLDESPSFAPNGRMILY 381 (417)
T ss_pred E-EeecCCC-CccCeEECCCCCEE-----EEEEccCCceEEEEEeCCCCCeE-EccC-CCCCCCceECCCCCEEEE
Confidence 3 3332323 46788999999973 322333 37999999876543 2222 223456789999998863
No 203
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=3.8e-17 Score=127.03 Aligned_cols=200 Identities=17% Similarity=0.274 Sum_probs=154.4
Q ss_pred EeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCcc-ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC
Q 024868 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT-DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (261)
Q Consensus 56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 134 (261)
...+..|.+.+..++|.|....|++++.||++++|+++.... ....+.+......|.++|.|++++++++.+++|+.||
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence 346778899999999999988999999999999999944221 1111222334456789999999999999999999999
Q ss_pred eEEEEEccCce----------EEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee----------
Q 024868 135 HLRIMHWPSLR----------IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR---------- 194 (261)
Q Consensus 135 ~i~~~d~~~~~----------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---------- 194 (261)
+|+.|++.... ....+.+|.+.++.+++|+....|++++.||++++|+.....+ .++..
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsv 445 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSV 445 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceE
Confidence 99999664211 1223456778999999999999999999999999998764333 00000
Q ss_pred -----------------------------------cC------CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868 195 -----------------------------------NS------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (261)
Q Consensus 195 -----------------------------------~~------~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~ 233 (261)
.. ...+.-+.++|.+.. .+++.+|+.|+++|..+
T Consensus 446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~-----~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADI-----TFTAHEDRSIRFFDNKT 520 (577)
T ss_pred eeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCe-----eEecccCCceecccccc
Confidence 00 012445667777766 68899999999999999
Q ss_pred CeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 234 WNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 234 ~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
++.+.....|...++++++.|+|-+|++
T Consensus 521 ~~~l~s~~a~~~svtslai~~ng~~l~s 548 (577)
T KOG0642|consen 521 GKILHSMVAHKDSVTSLAIDPNGPYLMS 548 (577)
T ss_pred cccchheeeccceecceeecCCCceEEe
Confidence 9999888999999999999999998863
No 204
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.75 E-value=6.4e-16 Score=110.60 Aligned_cols=163 Identities=23% Similarity=0.379 Sum_probs=108.7
Q ss_pred EEEEEeeCCcceEEEEecC--CCCC-CCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE--ec
Q 024868 9 CGSWIKRPENVNLVVLGKS--SRAS-SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS--TT 83 (261)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~--~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~ 83 (261)
.+.|+|.. ..+++.... +... .--+...++.++..+... ....+. ..++|.+++|+|+|+.+++. ..
T Consensus 10 ~~~W~~~G--~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~-----~~i~l~-~~~~I~~~~WsP~g~~favi~g~~ 81 (194)
T PF08662_consen 10 KLHWQPSG--DYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPV-----ESIELK-KEGPIHDVAWSPNGNEFAVIYGSM 81 (194)
T ss_pred EEEecccC--CEEEEEEEEeeccCcceEEeeEEEEEEecCCCcc-----ceeecc-CCCceEEEEECcCCCEEEEEEccC
Confidence 46788864 444443331 1111 112234666665554432 122232 34569999999999987654 35
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc---CCeEEEEEccCceEEeeccccCCceeEE
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---DGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~v~~~ 160 (261)
++.+.+||++... ...+ +...+..+.|||+|+++++++. .|.+.+||.++.+.+... .+..+..+
T Consensus 82 ~~~v~lyd~~~~~---------i~~~-~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~--~~~~~t~~ 149 (194)
T PF08662_consen 82 PAKVTLYDVKGKK---------IFSF-GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF--EHSDATDV 149 (194)
T ss_pred CcccEEEcCcccE---------eEee-cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc--ccCcEEEE
Confidence 6789999996322 1222 2356788999999999999863 467999999987776443 23457899
Q ss_pred EEcCCCCEEEEecC------CCcEEEEEccCCcEEEEE
Q 024868 161 DFSLDSEFLATTST------DGSARIWKTEDGVAWTFL 192 (261)
Q Consensus 161 ~~s~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~ 192 (261)
+|+|||+++++++. |+.++||+.. |+.+...
T Consensus 150 ~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 150 EWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 99999999998764 6889999984 6665544
No 205
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.74 E-value=2.7e-16 Score=114.96 Aligned_cols=169 Identities=20% Similarity=0.287 Sum_probs=131.8
Q ss_pred eeecCCCCCceEEEECC----C-CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC----cEE
Q 024868 57 YVFDESEGDPMTIAVNP----S-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG----SRF 127 (261)
Q Consensus 57 ~~~~~~~~~v~~~~~~~----~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l 127 (261)
.....|..++..++|++ + -..+++. ....+.+|....... ..++.. .....+.+....++|+-|. -++
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatv-G~~rvtiy~c~~d~~-ir~lq~-y~D~d~~Esfytcsw~yd~~~~~p~l 108 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATV-GGNRVTIYECPGDGG-IRLLQS-YADEDHDESFYTCSWSYDSNTGNPFL 108 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEe-CCcEEEEEEECCccc-eeeeee-ccCCCCCcceEEEEEEecCCCCCeeE
Confidence 34567888999999985 2 2334444 455689998876542 122221 1222455677888898753 378
Q ss_pred EEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCC-CCEEEEecCCCcEEEEEccCCcEEEEEee---cCCCceEEE
Q 024868 128 AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTR---NSDEKIELC 203 (261)
Q Consensus 128 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~v~~~ 203 (261)
|+++.-|.|++.|+.+++....+.+|...|..+.++|+ .+++++++.|..|++|++++..++..+-+ |.+ .|.++
T Consensus 109 a~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd-eVLSv 187 (385)
T KOG1034|consen 109 AAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD-EVLSV 187 (385)
T ss_pred EeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC-cEEEE
Confidence 88889999999999999988888888889999999995 57899999999999999999999988753 444 59999
Q ss_pred EEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (261)
Q Consensus 204 ~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~ 234 (261)
.|+++|.+ +++++.|.+|++|++...
T Consensus 188 D~~~~gd~-----i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 188 DFSLDGDR-----IASCGMDHSLKLWRLNVK 213 (385)
T ss_pred EEcCCCCe-----eeccCCcceEEEEecChh
Confidence 99999998 799999999999999853
No 206
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2e-16 Score=117.10 Aligned_cols=182 Identities=19% Similarity=0.241 Sum_probs=131.8
Q ss_pred CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC-CcEEEEeccCCeEEEEEcc
Q 024868 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWP 142 (261)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~ 142 (261)
-.+..++|++.-..++++..|-.|++|+-..... ..+ .......|.+++|-|. ++.|++|+..| |.+|...
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~p-t~L------ks~sQrnvtclawRPlsaselavgCr~g-IciW~~s 170 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP-TKL------KSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDS 170 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCC-cee------cchhhcceeEEEeccCCcceeeeeecce-eEEEEcC
Confidence 3578899999666788889999999999877331 111 1112467999999995 46677776555 8999764
Q ss_pred CceEE-----------eecc--ccCCceeEEEEcCCCCEEEEecC-CCcEEEEEccCCcEEEEEeecCCCceEEEEEecC
Q 024868 143 SLRII-----------LDEP--KAHKSVLDMDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD 208 (261)
Q Consensus 143 ~~~~~-----------~~~~--~~~~~v~~~~~s~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~ 208 (261)
..... ..+. ..+.+|+++.|.+||..+++++. |..|.|||..++..+.......+ .+.-+.||||
T Consensus 171 ~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg-g~slLkwSPd 249 (445)
T KOG2139|consen 171 RTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG-GFSLLKWSPD 249 (445)
T ss_pred cccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC-ceeeEEEcCC
Confidence 21110 0111 22357999999999999999885 67899999999887665533334 4889999999
Q ss_pred CCcceEEEEEeeCCCcEEEEEEC-CCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 209 GTKPFLFCTVQRGDKALLAVYDI-STWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 209 ~~~~~~~~~~~~~~d~~i~~~d~-~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
|.+ ++++.-|+..++|+. +++.... .....+.|....|+|+|++|.
T Consensus 250 gd~-----lfaAt~davfrlw~e~q~wt~er-w~lgsgrvqtacWspcGsfLL 296 (445)
T KOG2139|consen 250 GDV-----LFAATCDAVFRLWQENQSWTKER-WILGSGRVQTACWSPCGSFLL 296 (445)
T ss_pred CCE-----EEEecccceeeeehhcccceecc-eeccCCceeeeeecCCCCEEE
Confidence 999 577788999999954 4444443 333446999999999999885
No 207
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=6.8e-17 Score=120.95 Aligned_cols=202 Identities=10% Similarity=0.043 Sum_probs=146.9
Q ss_pred eEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC
Q 024868 54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD 133 (261)
Q Consensus 54 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 133 (261)
+....+.+|.+-|.++.|+.++++|++|+.|..+++|.++..-.......-......|...|.+++|+...+++++|..+
T Consensus 47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 33456778999999999999999999999999999999864321111001112333455889999999999999999999
Q ss_pred CeEEEEEccCceEEeeccccC---CceeEEEEcCCCCEEEEecCCCcEEEEEccCCc-EEEEE-eecCCCceEEEEEecC
Q 024868 134 GHLRIMHWPSLRIILDEPKAH---KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-AWTFL-TRNSDEKIELCRFSKD 208 (261)
Q Consensus 134 ~~i~~~d~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~-~~~~~~~v~~~~~~p~ 208 (261)
++|.+-|+.+.+.+... .+. +.|+.+..+|-.+.|++.+.++.|.+||.+..+ ++..+ ....+.....+.|+|.
T Consensus 127 ~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred ceeEeeecccceeeeee-cccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 99999999998876443 333 379999999999999999999999999998655 32222 2223335788999998
Q ss_pred CCcceEEEEEeeCCCcEEEEEECCCCeE-Eeee---eccCc---CeeEEEEeeCCCEEe
Q 024868 209 GTKPFLFCTVQRGDKALLAVYDISTWNK-IGHK---RLLRK---PASVLSISLDGKYLA 260 (261)
Q Consensus 209 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~-~~~~---~~~~~---~v~~~~~s~dg~~la 260 (261)
...+ +++.+..+-+.+||.+.... +... ...+. .-.++.|+|+|+.+.
T Consensus 206 ~P~L----i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~m 260 (609)
T KOG4227|consen 206 TPAL----ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFM 260 (609)
T ss_pred Ccee----EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeeh
Confidence 8874 46666667799999986543 1111 11111 124678999987653
No 208
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=5.6e-15 Score=109.69 Aligned_cols=220 Identities=15% Similarity=0.150 Sum_probs=151.8
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
..+....|+.+ ...+..|+.+| ++++.-++.+.-. ........|-.+-|+. .++|..+.+
T Consensus 6 ~ti~~~~~Nqd---~~~lsvGs~~G-------yk~~~~~~~~k~~--------~~~~~~~~IvEmLFSS--SLvaiV~~~ 65 (391)
T KOG2110|consen 6 PTINFIGFNQD---STLLSVGSKDG-------YKIFSCSPFEKCF--------SKDTEGVSIVEMLFSS--SLVAIVSIK 65 (391)
T ss_pred cceeeeeeccc---eeEEEccCCCc-------eeEEecCchHHhh--------cccCCCeEEEEeeccc--ceeEEEecC
Confidence 44566667664 55777787777 3566655543311 0111112344455553 345544443
Q ss_pred --CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecccc---CCceeE
Q 024868 85 --GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA---HKSVLD 159 (261)
Q Consensus 85 --g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~---~~~v~~ 159 (261)
+.+++++.+.+.. +-.+.-..+|.++.++. +.|+++-. ..|+|||+++.+.+..+... ...+..
T Consensus 66 qpr~Lkv~~~Kk~~~--------ICe~~fpt~IL~VrmNr--~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~A 134 (391)
T KOG2110|consen 66 QPRKLKVVHFKKKTT--------ICEIFFPTSILAVRMNR--KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCA 134 (391)
T ss_pred CCceEEEEEcccCce--------EEEEecCCceEEEEEcc--ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEe
Confidence 4588888876653 22222346788888875 35555534 44999999999887665443 235667
Q ss_pred EEEcCCCCEEEEec--CCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcE-EEEEECCCCeE
Q 024868 160 MDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL-LAVYDISTWNK 236 (261)
Q Consensus 160 ~~~s~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~-i~~~d~~~~~~ 236 (261)
+++++.+.+++.-+ ..|.|.+||+.+-+++..+..|.+ ++.+++|+|+|.+ ++++++.|+ ||||.+.+|+.
T Consensus 135 lS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~l-----lATASeKGTVIRVf~v~~G~k 208 (391)
T KOG2110|consen 135 LSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTL-----LATASEKGTVIRVFSVPEGQK 208 (391)
T ss_pred eccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCE-----EEEeccCceEEEEEEcCCccE
Confidence 77777777888633 358999999999999999998766 6999999999998 799998886 79999999999
Q ss_pred Eeeeecc--CcCeeEEEEeeCCCEEeC
Q 024868 237 IGHKRLL--RKPASVLSISLDGKYLAM 261 (261)
Q Consensus 237 ~~~~~~~--~~~v~~~~~s~dg~~la~ 261 (261)
+.++.-. ...|.+++|+||+++|+.
T Consensus 209 l~eFRRG~~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 209 LYEFRRGTYPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred eeeeeCCceeeEEEEEEECCCCCeEEE
Confidence 8776633 356889999999999873
No 209
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=1.6e-15 Score=121.62 Aligned_cols=204 Identities=19% Similarity=0.121 Sum_probs=123.5
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEE---EEecCC--cEEEEEEeCCccccceeeeeCCCCCCC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV---CSTTNG--GCKLFEVYGGATDINLLAKKMPPLQDA 112 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~~~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~ 112 (261)
.||..|.++... ..+..........+|+|||+.++ +...+| .|++.++.++.. .. +.. ..
T Consensus 166 ~l~~~d~dG~~~-------~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-~~-----lt~--~~ 230 (428)
T PRK01029 166 ELWSVDYDGQNL-------RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-KK-----ILA--LQ 230 (428)
T ss_pred eEEEEcCCCCCc-------eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-eE-----eec--CC
Confidence 788888877652 23444556678899999997532 333333 577778776653 11 111 12
Q ss_pred CCeEEEEEeeCCcEEEEecc-CC----eEEEEEccCc--eEEeeccccC-CceeEEEEcCCCCEEEEec-CCCcEEEE--
Q 024868 113 GPQKCLSFSVDGSRFAAGGV-DG----HLRIMHWPSL--RIILDEPKAH-KSVLDMDFSLDSEFLATTS-TDGSARIW-- 181 (261)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~-d~----~i~~~d~~~~--~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~-~d~~i~iw-- 181 (261)
+.....+|||||+.|+..+. +| .+..|++..+ .....+.... ......+|+|||+.|+..+ .++...+|
T Consensus 231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 34456899999998887642 22 3444666542 1222222222 3346789999999887665 45654555
Q ss_pred EccC-CcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 182 KTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 182 d~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
++.. +.....+..... .+....|+|||++++. .........|++||+.+++... +......+..+.|+|||++|+
T Consensus 311 ~~~~~g~~~~~lt~~~~-~~~~p~wSPDG~~Laf--~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~ 386 (428)
T PRK01029 311 QIDPEGQSPRLLTKKYR-NSSCPAWSPDGKKIAF--CSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLV 386 (428)
T ss_pred ECcccccceEEeccCCC-CccceeECCCCCEEEE--EEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEE
Confidence 4432 233344443322 4678899999998321 1111223579999999887643 333334567899999999886
No 210
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=2.4e-15 Score=121.55 Aligned_cols=220 Identities=15% Similarity=0.076 Sum_probs=132.8
Q ss_pred CceeeEEEEEeeCCcceEEEEec-CCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEE-E
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGK-SSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC-S 81 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~ 81 (261)
..++.+.+|+|+. ..++... .++. .+||.+|..++.. ..+....+.....+|+|||+.|+. .
T Consensus 217 ~~~~~~p~wSPDG---~~La~~s~~~g~------~~L~~~dl~tg~~-------~~lt~~~g~~~~~~wSPDG~~La~~~ 280 (448)
T PRK04792 217 PEPLMSPAWSPDG---RKLAYVSFENRK------AEIFVQDIYTQVR-------EKVTSFPGINGAPRFSPDGKKLALVL 280 (448)
T ss_pred CCcccCceECCCC---CEEEEEEecCCC------cEEEEEECCCCCe-------EEecCCCCCcCCeeECCCCCEEEEEE
Confidence 4567788999873 3444332 2332 2799999877652 112222334457899999998875 4
Q ss_pred ecCCc--EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-CC--eEEEEEccCceEEeeccccCCc
Q 024868 82 TTNGG--CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DG--HLRIMHWPSLRIILDEPKAHKS 156 (261)
Q Consensus 82 ~~dg~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~ 156 (261)
+.++. |+++|+.++.. .....+........|+|||+.|+..+. ++ .|+++|+.+++...... ....
T Consensus 281 ~~~g~~~Iy~~dl~tg~~--------~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~-~g~~ 351 (448)
T PRK04792 281 SKDGQPEIYVVDIATKAL--------TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF-EGEQ 351 (448)
T ss_pred eCCCCeEEEEEECCCCCe--------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec-CCCC
Confidence 55664 67777766542 111112234567899999998877653 33 57777877666433222 2223
Q ss_pred eeEEEEcCCCCEEEEecCC-C--cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868 157 VLDMDFSLDSEFLATTSTD-G--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (261)
Q Consensus 157 v~~~~~s~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~ 233 (261)
....+|+|||++|+..+.+ + .|.++|+.+++... +.... ......|+|||+.++. ....+....+++++..
T Consensus 352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~--~d~~ps~spdG~~I~~--~~~~~g~~~l~~~~~~- 425 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR--LDESPSVAPNGTMVIY--STTYQGKQVLAAVSID- 425 (448)
T ss_pred CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC--CCCCceECCCCCEEEE--EEecCCceEEEEEECC-
Confidence 3457899999998876543 3 46667887776533 33221 1335689999998421 1112223458888874
Q ss_pred CeEEeeeeccCcCeeEEEEee
Q 024868 234 WNKIGHKRLLRKPASVLSISL 254 (261)
Q Consensus 234 ~~~~~~~~~~~~~v~~~~~s~ 254 (261)
++....+....+.+..++|+|
T Consensus 426 G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 426 GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCceEECcCCCCCcCCCccCC
Confidence 444444555556778889987
No 211
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.73 E-value=2e-16 Score=112.43 Aligned_cols=232 Identities=16% Similarity=0.139 Sum_probs=156.2
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeec-CCCCCceEEEECCCCCeEEEEe
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD-ESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
.+.|+|+.|... ..+..|...| .+..|+..+..- ...+. .|...|+.+..-|++ .+.+-+
T Consensus 14 ~~~v~s~~fqa~----~rL~sg~~~G--------~V~~w~lqt~r~------~~~~r~~g~~~it~lq~~p~d-~l~tqg 74 (323)
T KOG0322|consen 14 SSSVTSVLFQAN----ERLMSGLSVG--------IVKMWVLQTERD------LPLIRLFGRLFITNLQSIPND-SLDTQG 74 (323)
T ss_pred cchheehhhccc----hhhhcccccc--------eEEEEEeecCcc------chhhhhhccceeeceeecCCc-chhhcC
Confidence 345666666542 2466777767 555555554432 22344 466788888888874 577778
Q ss_pred cCCcEEEEEEeCCcc--------------ccceee--------------------------------eeCCCCCCCCCeE
Q 024868 83 TNGGCKLFEVYGGAT--------------DINLLA--------------------------------KKMPPLQDAGPQK 116 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~--------------~~~~~~--------------------------------~~~~~~~~~~~v~ 116 (261)
.|+.+.+|++..... ...+.. .........+.+.
T Consensus 75 Rd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvm 154 (323)
T KOG0322|consen 75 RDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVM 154 (323)
T ss_pred CCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCcee
Confidence 899999999875211 000000 0000111124555
Q ss_pred EEEEee-CCc--EEEEeccCCeEEEEEccCceEEee----------ccccCCceeEEEEcCCCCEEEEecCCCcEEEEEc
Q 024868 117 CLSFSV-DGS--RFAAGGVDGHLRIMHWPSLRIILD----------EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKT 183 (261)
Q Consensus 117 ~~~~s~-~~~--~l~~~~~d~~i~~~d~~~~~~~~~----------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~ 183 (261)
+..+.. +++ ++++|.++|.+.+||+.++..+.. ...|.++|.++.+.+.-..=++++.+..+..|++
T Consensus 155 c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl 234 (323)
T KOG0322|consen 155 CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSL 234 (323)
T ss_pred eeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeee
Confidence 555433 233 456677999999999998744332 3356678999999875555577888888999988
Q ss_pred cC--CcE--EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEE
Q 024868 184 ED--GVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL 259 (261)
Q Consensus 184 ~~--~~~--~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 259 (261)
+. +.+ .......+. .+..+..-||++. +++++.|+.|++|..++..++..+..|...|.+++|+||...+
T Consensus 235 ~~s~gslq~~~e~~lknp-Gv~gvrIRpD~KI-----lATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lm 308 (323)
T KOG0322|consen 235 NHSTGSLQIRKEITLKNP-GVSGVRIRPDGKI-----LATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELM 308 (323)
T ss_pred ccccCcccccceEEecCC-CccceEEccCCcE-----EeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchh
Confidence 63 222 122222333 4889999999998 7999999999999999999999999999999999999997766
Q ss_pred e
Q 024868 260 A 260 (261)
Q Consensus 260 a 260 (261)
|
T Consensus 309 A 309 (323)
T KOG0322|consen 309 A 309 (323)
T ss_pred h
Confidence 5
No 212
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=3.1e-15 Score=122.00 Aligned_cols=163 Identities=12% Similarity=0.155 Sum_probs=121.3
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
..+++|.+++|. .+++|+|..+| +|.+|..-...- .......+.-|.+.|.+++|+++|.+|++|+.
T Consensus 205 tf~~t~~~~spn---~~~~Aa~d~dG--------rI~vw~d~~~~~--~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~ 271 (792)
T KOG1963|consen 205 TFNITCVALSPN---ERYLAAGDSDG--------RILVWRDFGSSD--DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGR 271 (792)
T ss_pred cccceeEEeccc---cceEEEeccCC--------cEEEEecccccc--ccccceEEEecccccceeEEecCCceEeeccc
Confidence 456899999994 78999999999 888876544111 12234568889999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecc---c--------
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP---K-------- 152 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---~-------- 152 (261)
.+.+.+|.+.+++. +++. .-.++|..+.+|||+.+.+....|+.|.+....+......+. .
T Consensus 272 E~VLv~Wq~~T~~k--qfLP------RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~ 343 (792)
T KOG1963|consen 272 EGVLVLWQLETGKK--QFLP------RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTR 343 (792)
T ss_pred ceEEEEEeecCCCc--cccc------ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccc
Confidence 99999999998872 2211 125789999999999999999899999998775543321111 1
Q ss_pred cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCc
Q 024868 153 AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV 187 (261)
Q Consensus 153 ~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~ 187 (261)
..+-.+.++++|.-+.++..+..+.|++||+.+.+
T Consensus 344 ~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~ 378 (792)
T KOG1963|consen 344 PQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDS 378 (792)
T ss_pred ccccceeEEEcCCCCceeecCCCceEEEEeccccc
Confidence 12235677888866677777788888888876543
No 213
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=2.3e-15 Score=121.63 Aligned_cols=201 Identities=15% Similarity=0.144 Sum_probs=126.6
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-C--cEEEEEEeCCccccceeeeeCCCCCCCCC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-G--GCKLFEVYGGATDINLLAKKMPPLQDAGP 114 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (261)
+++..|.++.. ...+..+...+....|+|||+.|+..+.+ + .|++||+.+++.. . .... .+.
T Consensus 199 ~l~i~d~dG~~-------~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~--~----lt~~--~g~ 263 (448)
T PRK04792 199 QLMIADYDGYN-------EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE--K----VTSF--PGI 263 (448)
T ss_pred EEEEEeCCCCC-------ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE--E----ecCC--CCC
Confidence 66777766554 22344556788899999999999876543 3 5888888766531 1 1111 223
Q ss_pred eEEEEEeeCCcEEEEe-ccCC--eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC-CC--cEEEEEccCCcE
Q 024868 115 QKCLSFSVDGSRFAAG-GVDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVA 188 (261)
Q Consensus 115 v~~~~~s~~~~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~iwd~~~~~~ 188 (261)
....+|+|||+.|+.. +.++ .|+++|+.+++.. .+..+.......+|+|||+.|+..+. ++ .|+++|+.+++.
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 3468999999988764 4555 4888888777653 34444445678899999998876654 33 567778877765
Q ss_pred EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 189 ~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
.. +..... .....+|+|||+++++ .........|.++|+.+++... +... .......|+|||++|+
T Consensus 343 ~~-Lt~~g~-~~~~~~~SpDG~~l~~--~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~ 408 (448)
T PRK04792 343 SR-LTFEGE-QNLGGSITPDGRSMIM--VNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVI 408 (448)
T ss_pred EE-EecCCC-CCcCeeECCCCCEEEE--EEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEE
Confidence 43 322222 2345789999998422 1111222367778988876532 2222 2233568999999886
No 214
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=4.6e-16 Score=109.47 Aligned_cols=169 Identities=15% Similarity=0.161 Sum_probs=125.3
Q ss_pred CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccc---eeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEE
Q 024868 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN---LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH 140 (261)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 140 (261)
..|.+-+|+|.+++|++|+.+|.|.++.+.+-..... -.........|.++++.++|. ..+|+++ .||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~-gdG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG-GDGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeec-cCceEEEee
Confidence 4577788999999999999999999999865321100 000112224567999999998 4467777 469999998
Q ss_pred ccCceE------Eeec--cccC-----CceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEec
Q 024868 141 WPSLRI------ILDE--PKAH-----KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK 207 (261)
Q Consensus 141 ~~~~~~------~~~~--~~~~-----~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p 207 (261)
.+.... .... +.+. ..|.++...|..+-+++++.|+.++-||+++|+..+++.+|.+. +.++.--.
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY-vH~vv~R~ 166 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY-VHSVVGRN 166 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce-eeeeeecc
Confidence 754322 1111 1111 25889999998888888889999999999999999999999885 99988733
Q ss_pred CCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868 208 DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (261)
Q Consensus 208 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~ 241 (261)
.... +++|++||++++||.++++.+..+.
T Consensus 167 ~~~q-----ilsG~EDGtvRvWd~kt~k~v~~ie 195 (325)
T KOG0649|consen 167 ANGQ-----ILSGAEDGTVRVWDTKTQKHVSMIE 195 (325)
T ss_pred cCcc-----eeecCCCccEEEEeccccceeEEec
Confidence 3344 5999999999999999998876554
No 215
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=6.4e-15 Score=119.25 Aligned_cols=222 Identities=13% Similarity=0.070 Sum_probs=136.4
Q ss_pred CCceeeEEEEEeeCCcceEEEEec-CCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGK-SSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 81 (261)
...++...+|+|+. ..++..+ .++.. +||.++..++.. ..+....+.+...+|+|||+.|+..
T Consensus 197 ~~~~~~~p~wSpDG---~~la~~s~~~~~~------~l~~~~l~~g~~-------~~l~~~~g~~~~~~~SpDG~~la~~ 260 (430)
T PRK00178 197 SREPILSPRWSPDG---KRIAYVSFEQKRP------RIFVQNLDTGRR-------EQITNFEGLNGAPAWSPDGSKLAFV 260 (430)
T ss_pred CCCceeeeeECCCC---CEEEEEEcCCCCC------EEEEEECCCCCE-------EEccCCCCCcCCeEECCCCCEEEEE
Confidence 34577888999873 3444333 22222 789999877653 2233334455679999999988744
Q ss_pred -ecCC--cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-CC--eEEEEEccCceEEeeccccCC
Q 024868 82 -TTNG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DG--HLRIMHWPSLRIILDEPKAHK 155 (261)
Q Consensus 82 -~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~ 155 (261)
..+| .|++||+.++... . ...+........|+|||+.|+..+. ++ .|+++++.+++...... ...
T Consensus 261 ~~~~g~~~Iy~~d~~~~~~~-~-------lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~ 331 (430)
T PRK00178 261 LSKDGNPEIYVMDLASRQLS-R-------VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGN 331 (430)
T ss_pred EccCCCceEEEEECCCCCeE-E-------cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCC
Confidence 4444 5788888776531 1 1112234556789999998877653 33 57788887766432222 222
Q ss_pred ceeEEEEcCCCCEEEEecCC-C--cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868 156 SVLDMDFSLDSEFLATTSTD-G--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (261)
Q Consensus 156 ~v~~~~~s~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~ 232 (261)
......|+|||++++..+.+ + .|.++|+.+++... +... . ......|+|||+.++. ....+....|+++++.
T Consensus 332 ~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~-~-~~~~p~~spdg~~i~~--~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 332 YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDT-S-LDESPSVAPNGTMLIY--ATRQQGRGVLMLVSIN 406 (430)
T ss_pred CccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCC-C-CCCCceECCCCCEEEE--EEecCCceEEEEEECC
Confidence 34567899999999876643 3 58889998876533 3321 1 2335689999998421 1112223468888886
Q ss_pred CCeEEeeeeccCcCeeEEEEeeC
Q 024868 233 TWNKIGHKRLLRKPASVLSISLD 255 (261)
Q Consensus 233 ~~~~~~~~~~~~~~v~~~~~s~d 255 (261)
.... ..+....+.+..++|+|-
T Consensus 407 g~~~-~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 407 GRVR-LPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CCce-EECcCCCCCcCCCccCCC
Confidence 4433 334445566788888873
No 216
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.71 E-value=1.4e-15 Score=111.11 Aligned_cols=192 Identities=13% Similarity=0.050 Sum_probs=140.8
Q ss_pred CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccc----eeee--eCCCCCCCCCeEEEEEe-------eCCcEEEEe
Q 024868 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN----LLAK--KMPPLQDAGPQKCLSFS-------VDGSRFAAG 130 (261)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~----~~~~--~~~~~~~~~~v~~~~~s-------~~~~~l~~~ 130 (261)
.-.....|+|||..|++-+.|..+.+|++........ .... ..........|...+|- |+..++++.
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 3456789999999999999999999999854321111 0000 00111123567777774 567789999
Q ss_pred ccCCeEEEEEccCceEEeecc--ccCC---ceeEEEEcCCCCEEEEecCCCcEEEEEc-cCCcEEEEE---e---ecCCC
Q 024868 131 GVDGHLRIMHWPSLRIILDEP--KAHK---SVLDMDFSLDSEFLATTSTDGSARIWKT-EDGVAWTFL---T---RNSDE 198 (261)
Q Consensus 131 ~~d~~i~~~d~~~~~~~~~~~--~~~~---~v~~~~~s~~~~~l~~~~~d~~i~iwd~-~~~~~~~~~---~---~~~~~ 198 (261)
+.+.-|++||.-+++....+. .|.. ...+++|+|||.+|++| ....|++||+ +.|+-.... . ....+
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 999999999999988755443 2332 46799999999999987 4688999999 555422211 1 11233
Q ss_pred ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 199 ~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
-+.+++|+|..... ++.++....+-||.-..+.++..+.+|++.|+.+.|.+||+.|.
T Consensus 209 iisc~a~sP~~~~~----~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lf 266 (406)
T KOG2919|consen 209 IISCFAFSPMDSKT----LAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLF 266 (406)
T ss_pred eeeeeeccCCCCcc----eeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeec
Confidence 58899999977642 58888888999999888889888889999999999999999775
No 217
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=1.8e-14 Score=105.14 Aligned_cols=191 Identities=18% Similarity=0.262 Sum_probs=130.8
Q ss_pred eEEE-EecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccc
Q 024868 20 NLVV-LGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD 98 (261)
Q Consensus 20 ~~~~-~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~ 98 (261)
++++ +||++..--++|. +.+||...... ..+ + ....+|.++.+.++ +|++. ..+.|++|...+....
T Consensus 59 N~laLVGGg~~pky~pNk--viIWDD~k~~~----i~e--l-~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~ 126 (346)
T KOG2111|consen 59 NYLALVGGGSRPKYPPNK--VIIWDDLKERC----IIE--L-SFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKL 126 (346)
T ss_pred ceEEEecCCCCCCCCCce--EEEEecccCcE----EEE--E-EeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhh
Confidence 4444 5655543345664 45556433332 112 2 23578999999765 46554 4667999999855332
Q ss_pred cceeeeeCCCCCCCCCeEEEEEee--CCcEEEEec-cCCeEEEEEccCceE--EeeccccCCceeEEEEcCCCCEEEEec
Q 024868 99 INLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGG-VDGHLRIMHWPSLRI--ILDEPKAHKSVLDMDFSLDSEFLATTS 173 (261)
Q Consensus 99 ~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~-~d~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~ 173 (261)
... .......... ++..| +..+||.-+ .-|.|.+-|+...+. ...+..|.+.|.+++.+-+|..+|++|
T Consensus 127 l~~----~et~~NPkGl--C~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS 200 (346)
T KOG2111|consen 127 LHV----IETRSNPKGL--CSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS 200 (346)
T ss_pred eee----eecccCCCce--EeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec
Confidence 221 1111212223 33444 334555433 568999999876554 345677888999999999999999999
Q ss_pred CCCc-EEEEEccCCcEEEEEeecC-CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868 174 TDGS-ARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (261)
Q Consensus 174 ~d~~-i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~ 233 (261)
..|+ |+|||..+|+.+.++.... .+.+.+++|||+..+ ++.+++.|++++|.++.
T Consensus 201 tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~-----LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 201 TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW-----LAVSSDKGTLHIFSLRD 257 (346)
T ss_pred cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccE-----EEEEcCCCeEEEEEeec
Confidence 9886 8999999999999887543 346999999999998 78899999999999875
No 218
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.70 E-value=3.2e-16 Score=111.34 Aligned_cols=169 Identities=18% Similarity=0.236 Sum_probs=128.2
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCce----ecCCeEEeeecCCCCCceEEEECCCCCeEE
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSV----YTSPLVTYVFDESEGDPMTIAVNPSGDDFV 79 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 79 (261)
-+.++|..|...-+...++++|..+| ++..||..++.. ............|..+|.++.|.+.-+.=+
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsg--------hvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGi 221 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESG--------HVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGI 221 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCC--------eEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCc
Confidence 46788888766555566777888888 778888766421 111222445667899999999987655567
Q ss_pred EEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeE
Q 024868 80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLD 159 (261)
Q Consensus 80 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~ 159 (261)
+|+.+..+..|+++......+... ...+ .+-.+..+..-||++.+|+++.|+.|++|..++..++..+.-|...|.+
T Consensus 222 sgga~dkl~~~Sl~~s~gslq~~~--e~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~ 298 (323)
T KOG0322|consen 222 SGGADDKLVMYSLNHSTGSLQIRK--EITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNA 298 (323)
T ss_pred CCCccccceeeeeccccCcccccc--eEEe-cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeE
Confidence 788888899999976532111110 0111 1345778899999999999999999999999999998777778889999
Q ss_pred EEEcCCCCEEEEecCCCcEEEEEc
Q 024868 160 MDFSLDSEFLATTSTDGSARIWKT 183 (261)
Q Consensus 160 ~~~s~~~~~l~~~~~d~~i~iwd~ 183 (261)
++|+|+...+|+++.|.+|.+|++
T Consensus 299 vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 299 VAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999986
No 219
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.69 E-value=1e-12 Score=103.12 Aligned_cols=220 Identities=16% Similarity=0.214 Sum_probs=137.0
Q ss_pred CCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec-CCcEEEEEEeCCccccceeee-------e
Q 024868 34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGATDINLLAK-------K 105 (261)
Q Consensus 34 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~-------~ 105 (261)
.+.+..+.++.+++.+.. .............++++|++++|+++.. +|.+.++++............ .
T Consensus 61 ~g~v~~~~i~~~~g~L~~----~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~ 136 (345)
T PF10282_consen 61 SGGVSSYRIDPDTGTLTL----LNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGP 136 (345)
T ss_dssp TTEEEEEEEETTTTEEEE----EEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEES
T ss_pred CCCEEEEEECCCcceeEE----eeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCC
Confidence 344566666666555411 1112213345678999999999998875 799999999875322211100 0
Q ss_pred CCCCCCCCCeEEEEEeeCCcEEEEec-cCCeEEEEEccCce--EE--ee-ccccCCceeEEEEcCCCCEEEEec-CCCcE
Q 024868 106 MPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLR--II--LD-EPKAHKSVLDMDFSLDSEFLATTS-TDGSA 178 (261)
Q Consensus 106 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~--~~--~~-~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i 178 (261)
....+......++.|+|+++++++.. ....|++|++.... .. .. ........+.+.|+|++++++... .++.|
T Consensus 137 ~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v 216 (345)
T PF10282_consen 137 NPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTV 216 (345)
T ss_dssp STTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEE
T ss_pred cccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcE
Confidence 00112235578899999999888764 34479999987654 21 11 123334679999999999887654 57889
Q ss_pred EEEEcc--CCcE--EEEEeec-----CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC--CCe--EEeeeeccCc
Q 024868 179 RIWKTE--DGVA--WTFLTRN-----SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TWN--KIGHKRLLRK 245 (261)
Q Consensus 179 ~iwd~~--~~~~--~~~~~~~-----~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~--~~~--~~~~~~~~~~ 245 (261)
.++++. +++. +..+... .......++++|||+++| ++....+.|.+|++. +++ .+........
T Consensus 217 ~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~ly----vsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~ 292 (345)
T PF10282_consen 217 SVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLY----VSNRGSNSISVFDLDPATGTLTLVQTVPTGGK 292 (345)
T ss_dssp EEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEE----EEECTTTEEEEEEECTTTTTEEEEEEEEESSS
T ss_pred EEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEE----EEeccCCEEEEEEEecCCCceEEEEEEeCCCC
Confidence 999998 4432 2222211 111477899999999853 555567789999993 333 3344444455
Q ss_pred CeeEEEEeeCCCEEeC
Q 024868 246 PASVLSISLDGKYLAM 261 (261)
Q Consensus 246 ~v~~~~~s~dg~~la~ 261 (261)
....++++|+|++|++
T Consensus 293 ~Pr~~~~s~~g~~l~V 308 (345)
T PF10282_consen 293 FPRHFAFSPDGRYLYV 308 (345)
T ss_dssp SEEEEEE-TTSSEEEE
T ss_pred CccEEEEeCCCCEEEE
Confidence 6899999999999874
No 220
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.4e-16 Score=123.90 Aligned_cols=166 Identities=10% Similarity=0.073 Sum_probs=127.1
Q ss_pred EeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccC
Q 024868 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVD 133 (261)
Q Consensus 56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d 133 (261)
+.++.+|++-|.+++|+.+|.+|++|+.|-.+.|||.-..+... .....|...|.++.|-| +.+.+++|..|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllh------sI~TgHtaNIFsvKFvP~tnnriv~sgAgD 116 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLH------SISTGHTANIFSVKFVPYTNNRIVLSGAGD 116 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceee------eeecccccceeEEeeeccCCCeEEEeccCc
Confidence 56789999999999999999999999999999999997555311 22234668899999999 56789999999
Q ss_pred CeEEEEEccCce----------EEeeccccCCceeEEEEcCCC-CEEEEecCCCcEEEEEccCCcEEE-------E---E
Q 024868 134 GHLRIMHWPSLR----------IILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWT-------F---L 192 (261)
Q Consensus 134 ~~i~~~d~~~~~----------~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~iwd~~~~~~~~-------~---~ 192 (261)
..|+++|+...+ .......|...|..++-.|++ +.+.+++.||.++-+|++...... . +
T Consensus 117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny 196 (758)
T KOG1310|consen 117 KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY 196 (758)
T ss_pred ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHh
Confidence 999999997421 222233455678889999987 788899999999999998632111 0 1
Q ss_pred eecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868 193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (261)
Q Consensus 193 ~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~ 232 (261)
....- ...++..+|...+. ++.|+.|-..++||.+
T Consensus 197 ~~~li-elk~ltisp~rp~~----laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 197 NPQLI-ELKCLTISPSRPYY----LAVGGSDPFARLYDRR 231 (758)
T ss_pred chhhh-eeeeeeecCCCCce----EEecCCCchhhhhhhh
Confidence 11111 25688999998873 5888999999999943
No 221
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=4.6e-15 Score=110.88 Aligned_cols=218 Identities=11% Similarity=0.051 Sum_probs=149.1
Q ss_pred EEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCe-EEEEecC--CcEEEEEEeCCcc
Q 024868 21 LVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDD-FVCSTTN--GGCKLFEVYGGAT 97 (261)
Q Consensus 21 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d--g~i~i~~~~~~~~ 97 (261)
.++++-++| .+..|....+.....+... +..+ ..+..+.-++.... +++|+.. ..+.+||++....
T Consensus 117 ~Litc~~sG--------~l~~~~~k~~d~hss~l~~--la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q 185 (412)
T KOG3881|consen 117 TLITCVSSG--------NLQVRHDKSGDLHSSKLIK--LATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ 185 (412)
T ss_pred EEEEEecCC--------cEEEEeccCCcccccccee--eecC-CceeeeccCCCCCceEecCchhcccceeeeeccccee
Confidence 344445555 5666665544432222222 2222 45666666775544 5568887 7899999987743
Q ss_pred cccee--eeeCCCCCCCCCeEEEEEeeC--CcEEEEeccCCeEEEEEccCceEE-eeccccCCceeEEEEcCCCCEEEEe
Q 024868 98 DINLL--AKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRII-LDEPKAHKSVLDMDFSLDSEFLATT 172 (261)
Q Consensus 98 ~~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~ 172 (261)
....- ....-.+.-.-.++++.|-+. ...|++++.-+.+++||.+.+... ..+.-...++.++...|++++++++
T Consensus 186 iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~g 265 (412)
T KOG3881|consen 186 IWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTG 265 (412)
T ss_pred eeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEe
Confidence 22110 000111111235578889886 789999999999999999876543 3344445689999999999999999
Q ss_pred cCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEE
Q 024868 173 STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI 252 (261)
Q Consensus 173 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 252 (261)
..-+.+..||++.++..........+.++++..+|.+++ +++++-|+.++|+|+.+.+.+... .....++.+-+
T Consensus 266 n~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~-----las~GLDRyvRIhD~ktrkll~kv-YvKs~lt~il~ 339 (412)
T KOG3881|consen 266 NTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPV-----LASCGLDRYVRIHDIKTRKLLHKV-YVKSRLTFILL 339 (412)
T ss_pred cccchhheecccCceeeccccCCccCCcceEEEcCCCce-----EEeeccceeEEEeecccchhhhhh-hhhccccEEEe
Confidence 999999999999999887733333446999999999998 799999999999999997665432 23355566666
Q ss_pred eeC
Q 024868 253 SLD 255 (261)
Q Consensus 253 s~d 255 (261)
.++
T Consensus 340 ~~~ 342 (412)
T KOG3881|consen 340 RDD 342 (412)
T ss_pred cCC
Confidence 554
No 222
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=3.9e-15 Score=111.69 Aligned_cols=166 Identities=7% Similarity=0.061 Sum_probs=122.5
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecC-CCCCceEEEECCCCCeEEEEe
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE-SEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~ 82 (261)
-|-|..+.|+.. ...+|+||.+. ++..|+.+.......|........ |...|.|++|.....++.+|.
T Consensus 56 ~GCiNAlqFS~N---~~~L~SGGDD~--------~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~ 124 (609)
T KOG4227|consen 56 TGCINALQFSHN---DRFLASGGDDM--------HGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE 124 (609)
T ss_pred ccccceeeeccC---CeEEeecCCcc--------eeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC
Confidence 456778888874 67899999998 777777655443333444434433 457899999999999999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCce-EEe--eccccCCceeE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IIL--DEPKAHKSVLD 159 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~-~~~--~~~~~~~~v~~ 159 (261)
.+++|...|+++.+.... ...-...+.|+.+..+|..+.+++.+.++.|.+||.+... ... .........+.
T Consensus 125 ~~~~VI~HDiEt~qsi~V-----~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t 199 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIYV-----ANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYT 199 (609)
T ss_pred CcceeEeeecccceeeee-----ecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCcccee
Confidence 999999999998764111 1112234689999999988889999999999999998655 211 11222346888
Q ss_pred EEEcCC-CCEEEEecCCCcEEEEEccC
Q 024868 160 MDFSLD-SEFLATTSTDGSARIWKTED 185 (261)
Q Consensus 160 ~~~s~~-~~~l~~~~~d~~i~iwd~~~ 185 (261)
+.|+|. ..+|++.+..+-+.+||.+.
T Consensus 200 ~~F~P~~P~Li~~~~~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 200 AEFHPETPALILVNSETGGPNVFDRRM 226 (609)
T ss_pred eeecCCCceeEEeccccCCCCceeecc
Confidence 999994 56788888888899999864
No 223
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.3e-15 Score=111.92 Aligned_cols=170 Identities=13% Similarity=0.167 Sum_probs=124.4
Q ss_pred CeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccCCeEEEEEccCceEEee--cc
Q 024868 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILD--EP 151 (261)
Q Consensus 76 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~ 151 (261)
..++++-..|.|++||..+++.... .-.+...++.++|.. ....+.+++.||+|++||++....... ..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~-------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~ 113 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEE-------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT 113 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhe-------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc
Confidence 4688888899999999998654111 111234566788876 457899999999999999997654332 22
Q ss_pred ccC-CceeEEEEcCCCCEEEEecC----CCcEEEEEccCCcE-EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcE
Q 024868 152 KAH-KSVLDMDFSLDSEFLATTST----DGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225 (261)
Q Consensus 152 ~~~-~~v~~~~~s~~~~~l~~~~~----d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~ 225 (261)
.+. .+..+++..-.++.+++|+. +-.+.+||.+..+. +..+...+...|++++|+|...-+ +++|+-||.
T Consensus 114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnl----LlSGSvDGL 189 (376)
T KOG1188|consen 114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNL----LLSGSVDGL 189 (376)
T ss_pred CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCe----EEeecccce
Confidence 222 25667766667888888764 56899999998765 666655444469999999988774 699999999
Q ss_pred EEEEECCCCeE---EeeeeccCcCeeEEEEeeCC
Q 024868 226 LAVYDISTWNK---IGHKRLLRKPASVLSISLDG 256 (261)
Q Consensus 226 i~~~d~~~~~~---~~~~~~~~~~v~~~~~s~dg 256 (261)
+.+||++.... +.....+...|..+.|..++
T Consensus 190 vnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 190 VNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKK 223 (376)
T ss_pred EEeeecCCCcchhhHHHhhcccceeeeeeeecCC
Confidence 99999976532 33344566789999999887
No 224
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.69 E-value=1.4e-14 Score=106.31 Aligned_cols=226 Identities=15% Similarity=0.171 Sum_probs=147.0
Q ss_pred CCCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE
Q 024868 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81 (261)
Q Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 81 (261)
+++.++..++|+|+. +.++....-+- +|-+|...+.+ ...++.....+..++|+|||++.+..
T Consensus 89 eg~agls~~~WSPdg--rhiL~tseF~l--------riTVWSL~t~~-------~~~~~~pK~~~kg~~f~~dg~f~ai~ 151 (447)
T KOG4497|consen 89 EGQAGLSSISWSPDG--RHILLTSEFDL--------RITVWSLNTQK-------GYLLPHPKTNVKGYAFHPDGQFCAIL 151 (447)
T ss_pred cCCCcceeeeECCCc--ceEeeeeccee--------EEEEEEeccce-------eEEecccccCceeEEECCCCceeeee
Confidence 577889999999973 56666666666 66666665554 22344444566788888888887765
Q ss_pred ecC------------------------------------CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCc
Q 024868 82 TTN------------------------------------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS 125 (261)
Q Consensus 82 ~~d------------------------------------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 125 (261)
+.. ..+.+||---. .+ .......-.+..++|+|.++
T Consensus 152 sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le---yk-----v~aYe~~lG~k~v~wsP~~q 223 (447)
T KOG4497|consen 152 SRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE---YK-----VYAYERGLGLKFVEWSPCNQ 223 (447)
T ss_pred ecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh---he-----eeeeeeccceeEEEeccccc
Confidence 432 11222221100 00 00111124578899999999
Q ss_pred EEEEeccCCeEEEEEccCce------------------------------------------------------------
Q 024868 126 RFAAGGVDGHLRIMHWPSLR------------------------------------------------------------ 145 (261)
Q Consensus 126 ~l~~~~~d~~i~~~d~~~~~------------------------------------------------------------ 145 (261)
++++|+.|+.+++.+--+-+
T Consensus 224 flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv 303 (447)
T KOG4497|consen 224 FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPV 303 (447)
T ss_pred eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcce
Confidence 99999999988776530000
Q ss_pred EEee------ccccCCceeEEEEcCCCCEEEEecCC--CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEE
Q 024868 146 IILD------EPKAHKSVLDMDFSLDSEFLATTSTD--GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT 217 (261)
Q Consensus 146 ~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~ 217 (261)
.... .......+..++|++|..++++-.+. +.+.+||++.-+.-..+.. ..+|+...|+|.... +
T Consensus 304 ~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ--k~piraf~WdP~~pr-----L 376 (447)
T KOG4497|consen 304 KVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ--KHPIRAFEWDPGRPR-----L 376 (447)
T ss_pred eeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh--ccceeEEEeCCCCce-----E
Confidence 0000 01112246789999999999987653 6799999998776555542 236999999999888 3
Q ss_pred EeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 218 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
+.......+++|.......+ .....+-.|..+.|.-+|..++
T Consensus 377 ~vctg~srLY~W~psg~~~V-~vP~~GF~i~~l~W~~~g~~i~ 418 (447)
T KOG4497|consen 377 VVCTGKSRLYFWAPSGPRVV-GVPKKGFNIQKLQWLQPGEFIV 418 (447)
T ss_pred EEEcCCceEEEEcCCCceEE-ecCCCCceeeeEEecCCCcEEE
Confidence 44444557999998764444 3455557899999999998876
No 225
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.68 E-value=2.8e-14 Score=115.30 Aligned_cols=219 Identities=16% Similarity=0.152 Sum_probs=134.2
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE-ec
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TT 83 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~ 83 (261)
.++...+|+|+. ..++.....+ +...++.||..++.. ..+..+.+.+.+++|+|||+.|+.. +.
T Consensus 190 ~~~~~p~~Spdg---~~la~~~~~~-----~~~~i~v~d~~~g~~-------~~~~~~~~~~~~~~~spDg~~l~~~~~~ 254 (417)
T TIGR02800 190 EPILSPAWSPDG---QKLAYVSFES-----GKPEIYVQDLATGQR-------EKVASFPGMNGAPAFSPDGSKLAVSLSK 254 (417)
T ss_pred CceecccCCCCC---CEEEEEEcCC-----CCcEEEEEECCCCCE-------EEeecCCCCccceEECCCCCEEEEEECC
Confidence 457778888863 3445443221 112788888877652 1233455667789999999988654 33
Q ss_pred CC--cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-CC--eEEEEEccCceEEeeccccCCcee
Q 024868 84 NG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DG--HLRIMHWPSLRIILDEPKAHKSVL 158 (261)
Q Consensus 84 dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~v~ 158 (261)
++ .|++|++.++.. . ....+........|+|||+.|+..+. ++ .|+++|+.+++.. .+........
T Consensus 255 ~~~~~i~~~d~~~~~~-~-------~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 255 DGNPDIYVMDLDGKQL-T-------RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred CCCccEEEEECCCCCE-E-------ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 43 588888876542 1 11112233456789999998877653 33 5888888766543 3333344567
Q ss_pred EEEEcCCCCEEEEecCCC---cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868 159 DMDFSLDSEFLATTSTDG---SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (261)
Q Consensus 159 ~~~~s~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~ 235 (261)
.+.|+|+|++++.++.++ .|.+||+.++... .+... . ......|+|||+++++ .........+++.+... +
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~-~~~~p~~spdg~~l~~--~~~~~~~~~l~~~~~~g-~ 399 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-G-LDESPSFAPNGRMILY--ATTRGGRGVLGLVSTDG-R 399 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-C-CCCCceECCCCCEEEE--EEeCCCcEEEEEEECCC-c
Confidence 889999999999887765 7899998876543 33222 1 2456689999997421 12222234677777554 4
Q ss_pred EEeeeeccCcCeeEEEEe
Q 024868 236 KIGHKRLLRKPASVLSIS 253 (261)
Q Consensus 236 ~~~~~~~~~~~v~~~~~s 253 (261)
....+....+.+..++|+
T Consensus 400 ~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 400 FRARLPLGNGDVREPAWS 417 (417)
T ss_pred eeeECCCCCCCcCCCCCC
Confidence 444444444556666653
No 226
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=8.5e-15 Score=118.44 Aligned_cols=216 Identities=16% Similarity=0.121 Sum_probs=150.2
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeec------CCCCCceEEEECC-CC
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD------ESEGDPMTIAVNP-SG 75 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~-~~ 75 (261)
...||..+.|..+..+ .-+++++.|| .|..|+.+....+.......... .....+++++|.+ +-
T Consensus 290 h~~~v~~vvW~~~~~~-~~f~s~ssDG--------~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p 360 (555)
T KOG1587|consen 290 HSEPVTAVVWLQNEHN-TEFFSLSSDG--------SICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP 360 (555)
T ss_pred CCcCeEEEEEeccCCC-CceEEEecCC--------cEeeeeccccccchhhcccccccccccccccccceeeEeeccCCC
Confidence 4578888999887655 5677777899 78888766544322211111111 1234688999988 56
Q ss_pred CeEEEEecCCcEEEEEEeCCcccc-ceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEcc-CceEEeecccc
Q 024868 76 DDFVCSTTNGGCKLFEVYGGATDI-NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP-SLRIILDEPKA 153 (261)
Q Consensus 76 ~~l~~~~~dg~i~i~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~ 153 (261)
..++.|+++|.|+.=+..+..... ...........|.++|+.+.++|=+..++..+.|.++++|... ...++..+..+
T Consensus 361 ~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~ 440 (555)
T KOG1587|consen 361 NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSS 440 (555)
T ss_pred ceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhc
Confidence 678899999988774443333212 2222233555678999999999966554444459999999977 55555556666
Q ss_pred CCceeEEEEcCC-CCEEEEecCCCcEEEEEccCC--cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEE
Q 024868 154 HKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD 230 (261)
Q Consensus 154 ~~~v~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d 230 (261)
...+++++|||. ...++++..||.+.+||+... +++.+.... ....+.+.|++.|+. ++.|...|++++|+
T Consensus 441 ~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~-----lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 441 PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKL-----LAVGDANGTTHILK 514 (555)
T ss_pred cceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc-ccccceeecCCCCcE-----EEEecCCCcEEEEE
Confidence 667999999995 457888888999999999754 344444433 335778889999998 79999999999999
Q ss_pred CCC
Q 024868 231 IST 233 (261)
Q Consensus 231 ~~~ 233 (261)
+..
T Consensus 515 l~~ 517 (555)
T KOG1587|consen 515 LSE 517 (555)
T ss_pred cCc
Confidence 963
No 227
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.1e-14 Score=117.24 Aligned_cols=193 Identities=17% Similarity=0.186 Sum_probs=143.6
Q ss_pred cCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEE
Q 024868 60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (261)
Q Consensus 60 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~ 139 (261)
..|.-.+++.++||++++++++..||+|.+|.--....... ......-|+..|.++.|+++|.+|++|+..+.+.+|
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~---t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~W 278 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE---TCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLW 278 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc---cceEEEecccccceeEEecCCceEeecccceEEEEE
Confidence 34666689999999999999999999999996544111000 001122357899999999999999999999999999
Q ss_pred EccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeec----------CCCceEEEEEecCC
Q 024868 140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN----------SDEKIELCRFSKDG 209 (261)
Q Consensus 140 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----------~~~~v~~~~~~p~~ 209 (261)
.+.++++ +-++.-.++|..+.+|||+.+.+....|++|.+....+.+...++.+- ...-.+.++++|.-
T Consensus 279 q~~T~~k-qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~ 357 (792)
T KOG1963|consen 279 QLETGKK-QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRT 357 (792)
T ss_pred eecCCCc-ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCC
Confidence 9999884 456666779999999999999999999999999987655443333211 12236678899955
Q ss_pred CcceEEEEEeeCCCcEEEEEECCCCeEEeeeec-----cC------cCeeEEEEeeCCCEEeC
Q 024868 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-----LR------KPASVLSISLDGKYLAM 261 (261)
Q Consensus 210 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~-----~~------~~v~~~~~s~dg~~la~ 261 (261)
+. ++..+..|.|.+||+-+.+.+..+.. +. -.+..++.+-.|.++++
T Consensus 358 ~~-----~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT 415 (792)
T KOG1963|consen 358 NS-----LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMAT 415 (792)
T ss_pred Cc-----eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEE
Confidence 54 57788999999999988776544332 11 24567777777888764
No 228
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.65 E-value=1.5e-14 Score=115.45 Aligned_cols=185 Identities=19% Similarity=0.278 Sum_probs=133.8
Q ss_pred CceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCC-CCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC
Q 024868 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL-QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (261)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 143 (261)
.|..++|-|||..|+.+..+ .+.+||...+.. ..++ .|+..|++++|+.||+.+++|+.|..|.+|.-.-
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~l--------lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTL--------LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL 84 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCccc--------ccccccccceEEEEEEccCCceeccCCCceeEEEecccc
Confidence 68999999999999887544 599999998875 3333 4578999999999999999999999999998532
Q ss_pred ceEE--------ee---------------------------ccccC--CceeEEEEcCCCCEEEEecCCCcEEEEEccCC
Q 024868 144 LRII--------LD---------------------------EPKAH--KSVLDMDFSLDSEFLATTSTDGSARIWKTEDG 186 (261)
Q Consensus 144 ~~~~--------~~---------------------------~~~~~--~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~ 186 (261)
...+ +- ...+. ..+.+++|..||++++.|-.||+|.|-+- ++
T Consensus 85 EG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~g 163 (1081)
T KOG1538|consen 85 EGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NG 163 (1081)
T ss_pred cceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CC
Confidence 1111 00 00111 25778999999999999999999998864 44
Q ss_pred cEEEEEe--ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 187 VAWTFLT--RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 187 ~~~~~~~--~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
++.-.+. +..+.+|++++|+|....-..-.++......++.+|.+. |+.+..-...+....++++-++|.|+.
T Consensus 164 Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~L 238 (1081)
T KOG1538|consen 164 EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYIL 238 (1081)
T ss_pred CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEE
Confidence 4444443 334568999999996432011114556667778888774 566654555566778899999999875
No 229
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.65 E-value=3.7e-16 Score=119.12 Aligned_cols=218 Identities=12% Similarity=0.100 Sum_probs=161.6
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG 85 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 85 (261)
.|..+.|... ..++|++. .. .+++||..+.++ +.++.| ..|..+.|-|..-+|++++..|
T Consensus 172 tv~Dv~~LHn---eq~~AVAQ-K~--------y~yvYD~~GtEl-------HClk~~-~~v~rLeFLPyHfLL~~~~~~G 231 (545)
T KOG1272|consen 172 TVRDVTFLHN---EQFFAVAQ-KK--------YVYVYDNNGTEL-------HCLKRH-IRVARLEFLPYHFLLVAASEAG 231 (545)
T ss_pred hhhhhhhhcc---hHHHHhhh-hc--------eEEEecCCCcEE-------eehhhc-CchhhhcccchhheeeecccCC
Confidence 3445555443 34566653 33 688999888774 345544 5688999999988889999999
Q ss_pred cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCC
Q 024868 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD 165 (261)
Q Consensus 86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~ 165 (261)
.++--|+..++.... .....+.+..++-+|-+..+-+|...|+|.+|.....+++..+..|.++|.++++.++
T Consensus 232 ~L~Y~DVS~GklVa~-------~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~ 304 (545)
T KOG1272|consen 232 FLKYQDVSTGKLVAS-------IRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRG 304 (545)
T ss_pred ceEEEeechhhhhHH-------HHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCC
Confidence 999999999875222 1223567788888998889999999999999999988988899999999999999999
Q ss_pred CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEEC-CCC----eEEeee
Q 024868 166 SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI-STW----NKIGHK 240 (261)
Q Consensus 166 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~-~~~----~~~~~~ 240 (261)
|+|+++++.|..++|||+++...+.++... .+...+++|..|-. + .+....+.+|.= -.+ +...-.
T Consensus 305 G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp--~~a~~ls~SqkglL------A-~~~G~~v~iw~d~~~~s~~~~~pYm~ 375 (545)
T KOG1272|consen 305 GRYMATTGLDRKVKIWDLRNFYQLHTYRTP--HPASNLSLSQKGLL------A-LSYGDHVQIWKDALKGSGHGETPYMN 375 (545)
T ss_pred CcEEeecccccceeEeeeccccccceeecC--CCccccccccccce------e-eecCCeeeeehhhhcCCCCCCcchhh
Confidence 999999999999999999988877776643 34788899987753 3 333446899962 221 111111
Q ss_pred eccCcCeeEEEEeeCCCEE
Q 024868 241 RLLRKPASVLSISLDGKYL 259 (261)
Q Consensus 241 ~~~~~~v~~~~~s~dg~~l 259 (261)
....++|..+.|.|-...|
T Consensus 376 H~~~~~V~~l~FcP~EDvL 394 (545)
T KOG1272|consen 376 HRCGGPVEDLRFCPYEDVL 394 (545)
T ss_pred hccCcccccceeccHHHee
Confidence 2233578888888855443
No 230
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=5.1e-15 Score=116.34 Aligned_cols=198 Identities=12% Similarity=0.149 Sum_probs=144.2
Q ss_pred CceeeEEEEEeeCCcceEEEEecC-CCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKS-SRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
..+|..+.|+.+. .++++-.. ++.- .+.+++...... ...+....+.|.++.|+|...+|++++
T Consensus 521 ~k~i~~vtWHrkG---DYlatV~~~~~~~------~VliHQLSK~~s------Q~PF~kskG~vq~v~FHPs~p~lfVaT 585 (733)
T KOG0650|consen 521 PKSIRQVTWHRKG---DYLATVMPDSGNK------SVLIHQLSKRKS------QSPFRKSKGLVQRVKFHPSKPYLFVAT 585 (733)
T ss_pred CCccceeeeecCC---ceEEEeccCCCcc------eEEEEecccccc------cCchhhcCCceeEEEecCCCceEEEEe
Confidence 3578888999864 35553322 2211 566666654442 234555668899999999999998876
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecc-ccCCceeEEE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP-KAHKSVLDMD 161 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~ 161 (261)
.. .|++||+..+....+ .+.....|..++.+|.|..|+.++.|+.+..+|+.-.....+.. -|...+++++
T Consensus 586 q~-~vRiYdL~kqelvKk-------L~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va 657 (733)
T KOG0650|consen 586 QR-SVRIYDLSKQELVKK-------LLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVA 657 (733)
T ss_pred cc-ceEEEehhHHHHHHH-------HhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhh
Confidence 54 599999987654222 22334678899999999999999999999999998665444444 4455899999
Q ss_pred EcCCCCEEEEecCCCcEEEEEcc------CC---cEEEEEeecCC---CceEEEEEecCCCcceEEEEEeeCCCcEEEEE
Q 024868 162 FSLDSEFLATTSTDGSARIWKTE------DG---VAWTFLTRNSD---EKIELCRFSKDGTKPFLFCTVQRGDKALLAVY 229 (261)
Q Consensus 162 ~s~~~~~l~~~~~d~~i~iwd~~------~~---~~~~~~~~~~~---~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~ 229 (261)
|++.=.++++++.||.+.||--. .. -+++.+.+|.. ..|..+.|+|...+ +++++.||+|++|
T Consensus 658 ~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpW-----LfsAGAd~tirlf 732 (733)
T KOG0650|consen 658 FHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPW-----LFSAGADGTIRLF 732 (733)
T ss_pred hccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCce-----EEecCCCceEEee
Confidence 99999999999999999998532 22 23455555432 24778889999999 7899999999998
No 231
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.65 E-value=2.8e-12 Score=100.71 Aligned_cols=218 Identities=16% Similarity=0.229 Sum_probs=142.2
Q ss_pred CCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec----CCcEEEEEEeCCccccceeeeeCC
Q 024868 32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT----NGGCKLFEVYGGATDINLLAKKMP 107 (261)
Q Consensus 32 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~~~~~~~~~~~~~~~~~~ 107 (261)
+..+.|.++.+|..++.+.. .... ........++++|++++|.+..+ ++.|..|++.........+...
T Consensus 10 ~~~~gI~~~~~d~~~g~l~~----~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~-- 82 (345)
T PF10282_consen 10 GKGGGIYVFRFDEETGTLTL----VQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV-- 82 (345)
T ss_dssp SSSTEEEEEEEETTTTEEEE----EEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE--
T ss_pred CCCCcEEEEEEcCCCCCceE----eeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee--
Confidence 34466788889888887622 1111 13456778999999999988876 4789999998752212221111
Q ss_pred CCCCCCCeEEEEEeeCCcEEEEec-cCCeEEEEEccCc-eEEee--cc-----------ccCCceeEEEEcCCCCEEEEe
Q 024868 108 PLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSL-RIILD--EP-----------KAHKSVLDMDFSLDSEFLATT 172 (261)
Q Consensus 108 ~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~-~~~~~--~~-----------~~~~~v~~~~~s~~~~~l~~~ 172 (261)
.........++++|++++|+++. .+|.+.++++... ..... .. .......++.++|+|+++++.
T Consensus 83 -~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 83 -PSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp -EESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred -ccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 11234556799999999998886 5899999999763 22111 11 112357899999999988775
Q ss_pred cC-CCcEEEEEccCCc--E--EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC--CCeE--Eeeeecc
Q 024868 173 ST-DGSARIWKTEDGV--A--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TWNK--IGHKRLL 243 (261)
Q Consensus 173 ~~-d~~i~iwd~~~~~--~--~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~--~~~~--~~~~~~~ 243 (261)
.. ...|++|++.... . ...+....+...+.++|+|+++++| +....+++|.+|++. +++. +......
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Y----v~~e~s~~v~v~~~~~~~g~~~~~~~~~~~ 237 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAY----VVNELSNTVSVFDYDPSDGSLTEIQTISTL 237 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEE----EEETTTTEEEEEEEETTTTEEEEEEEEESC
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEE----EecCCCCcEEEEeecccCCceeEEEEeeec
Confidence 43 4679999997654 3 2233444555689999999999854 556778899999988 4432 2222222
Q ss_pred ------CcCeeEEEEeeCCCEEeC
Q 024868 244 ------RKPASVLSISLDGKYLAM 261 (261)
Q Consensus 244 ------~~~v~~~~~s~dg~~la~ 261 (261)
......++++|||++|.+
T Consensus 238 ~~~~~~~~~~~~i~ispdg~~lyv 261 (345)
T PF10282_consen 238 PEGFTGENAPAEIAISPDGRFLYV 261 (345)
T ss_dssp ETTSCSSSSEEEEEE-TTSSEEEE
T ss_pred cccccccCCceeEEEecCCCEEEE
Confidence 125778999999999863
No 232
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.8e-13 Score=109.30 Aligned_cols=197 Identities=12% Similarity=0.048 Sum_probs=124.8
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCe-EEEEecC---CcEEEEEEeCCccccceeeeeCCCCCCCC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDD-FVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAG 113 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 113 (261)
+|+.-|.+.... ...+. . +......|+|||+. ++..+.+ ..|+++|+.+++.. . . ....+
T Consensus 170 ~l~~~d~dg~~~------~~~~~-~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-~-----l--t~~~g 233 (419)
T PRK04043 170 NIVLADYTLTYQ------KVIVK-G-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-K-----I--ASSQG 233 (419)
T ss_pred eEEEECCCCCce------eEEcc-C-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-E-----E--ecCCC
Confidence 777777766542 22233 2 36788999999985 5544433 46888888776531 1 1 11234
Q ss_pred CeEEEEEeeCCcEEEEec-c--CCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCC-C--cEEEEEccCCc
Q 024868 114 PQKCLSFSVDGSRFAAGG-V--DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-G--SARIWKTEDGV 187 (261)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~-~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~--~i~iwd~~~~~ 187 (261)
......|+|||+.++... . +..|+++|+.+++.. .+...........|+|||+.|+..+.. + .|++.|+.+++
T Consensus 234 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~ 312 (419)
T PRK04043 234 MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS 312 (419)
T ss_pred cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 556788999998776543 2 356888898777643 333333334456899999988776642 3 68888888777
Q ss_pred EEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC--------cEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEE
Q 024868 188 AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK--------ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL 259 (261)
Q Consensus 188 ~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d--------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 259 (261)
..+..... . ....|+|||+++. ++.... ..|.+.|+.+++.. .+... .......|+|||+.|
T Consensus 313 ~~rlt~~g-~---~~~~~SPDG~~Ia----~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I 382 (419)
T PRK04043 313 VEQVVFHG-K---NNSSVSTYKNYIV----YSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSI 382 (419)
T ss_pred eEeCccCC-C---cCceECCCCCEEE----EEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEE
Confidence 64433221 1 2348999999842 222221 47999999887654 23322 233468999999988
Q ss_pred eC
Q 024868 260 AM 261 (261)
Q Consensus 260 a~ 261 (261)
++
T Consensus 383 ~f 384 (419)
T PRK04043 383 MF 384 (419)
T ss_pred EE
Confidence 63
No 233
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.64 E-value=5.1e-13 Score=104.91 Aligned_cols=196 Identities=16% Similarity=0.162 Sum_probs=128.8
Q ss_pred ceEE-EEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCcc
Q 024868 19 VNLV-VLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT 97 (261)
Q Consensus 19 ~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~ 97 (261)
.+++ ++-..++ ++..+|..+.+. ...+......-..+.++|||+++++++.||.|.++|+.+.+.
T Consensus 5 ~~l~~V~~~~~~--------~v~viD~~t~~~------~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~ 70 (369)
T PF02239_consen 5 GNLFYVVERGSG--------SVAVIDGATNKV------VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV 70 (369)
T ss_dssp GGEEEEEEGGGT--------EEEEEETTT-SE------EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE
T ss_pred ccEEEEEecCCC--------EEEEEECCCCeE------EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE
Confidence 3444 4555667 899999988765 334543333344578999999999999999999999998875
Q ss_pred ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cCCeEEEEEccCceEEeecccc-------CCceeEEEEcCCCCEE
Q 024868 98 DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDEPKA-------HKSVLDMDFSLDSEFL 169 (261)
Q Consensus 98 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l 169 (261)
. ..+.......++++|+||+++++++ ..+.+.++|.++.+.+..+... ...+..+..+|....+
T Consensus 71 v--------~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~f 142 (369)
T PF02239_consen 71 V--------ATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEF 142 (369)
T ss_dssp E--------EEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEE
T ss_pred E--------EEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEE
Confidence 2 2222234568899999999998876 6889999999998877655432 2357788888888755
Q ss_pred EE-ecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868 170 AT-TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (261)
Q Consensus 170 ~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~ 240 (261)
+. .-+.+.|.+.|....+.+..-....+.......|+|+++++ +++...++.|.++|.++++.+..+
T Consensus 143 Vv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~----~va~~~sn~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 143 VVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYF----LVAANGSNKIAVIDTKTGKLVALI 210 (369)
T ss_dssp EEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEE----EEEEGGGTEEEEEETTTTEEEEEE
T ss_pred EEEEccCCeEEEEEeccccccceeeecccccccccccCccccee----eecccccceeEEEeeccceEEEEe
Confidence 54 44558888889876654433222233358889999999983 244455668999999998876544
No 234
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=1.7e-13 Score=100.11 Aligned_cols=223 Identities=12% Similarity=0.164 Sum_probs=144.3
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEE-EEe
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV-CST 82 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~ 82 (261)
..+...++|+.+ ..-+++|...| .+||..||-.... ........-.+..+-| -.++|+ +|+
T Consensus 5 ~~~~lsvs~NQD---~ScFava~~~G-------friyn~~P~ke~~------~r~~~~~G~~~veMLf--R~N~laLVGG 66 (346)
T KOG2111|consen 5 EPKTLSVSFNQD---HSCFAVATDTG-------FRIYNCDPFKESA------SRQFIDGGFKIVEMLF--RSNYLALVGG 66 (346)
T ss_pred cCceeEEEEccC---CceEEEEecCc-------eEEEecCchhhhh------hhccccCchhhhhHhh--hhceEEEecC
Confidence 345667899886 44677776655 4788888743321 1111111112222222 234444 333
Q ss_pred cC------CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC-ceEEeecccc--
Q 024868 83 TN------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-LRIILDEPKA-- 153 (261)
Q Consensus 83 ~d------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~-- 153 (261)
.+ .++.|||-....+ ...+.-..+|.++.++++ .|++. ..+.|++|...+ .+.+..+...
T Consensus 67 g~~pky~pNkviIWDD~k~~~--------i~el~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~N 135 (346)
T KOG2111|consen 67 GSRPKYPPNKVIIWDDLKERC--------IIELSFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSN 135 (346)
T ss_pred CCCCCCCCceEEEEecccCcE--------EEEEEeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccC
Confidence 32 5799999433332 333444678999999875 55555 577899999873 3333333222
Q ss_pred CCceeEEEEcCCCCEEEEec-CCCcEEEEEccCCcE--EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcE-EEEE
Q 024868 154 HKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL-LAVY 229 (261)
Q Consensus 154 ~~~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~-i~~~ 229 (261)
.....+++-+.+..+||.-+ .-|+|+|-|+...+. ...+..|.. .|.+++.+.+|.. +++++..|+ |+||
T Consensus 136 PkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~-----vATaStkGTLIRIF 209 (346)
T KOG2111|consen 136 PKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTL-----VATASTKGTLIRIF 209 (346)
T ss_pred CCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccE-----EEEeccCcEEEEEE
Confidence 22355554444555666644 469999999986554 355666655 6999999999998 789988886 8999
Q ss_pred ECCCCeEEeeeec--cCcCeeEEEEeeCCCEEeC
Q 024868 230 DISTWNKIGHKRL--LRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 230 d~~~~~~~~~~~~--~~~~v~~~~~s~dg~~la~ 261 (261)
|..+|+++.++.- ....+.+++||||+.+||+
T Consensus 210 dt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lav 243 (346)
T KOG2111|consen 210 DTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAV 243 (346)
T ss_pred EcCCCcEeeeeecCCchheEEEEEeCCCccEEEE
Confidence 9999999877653 3468999999999999985
No 235
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.63 E-value=1.9e-13 Score=105.16 Aligned_cols=209 Identities=13% Similarity=0.114 Sum_probs=145.9
Q ss_pred EEEEEcCCCCceecCCeE-----EeeecCCCCCceEEE-ECC-CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCC
Q 024868 38 EIFSFDPKTTSVYTSPLV-----TYVFDESEGDPMTIA-VNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ 110 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~-~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 110 (261)
.||.||+.+..+....+. .........+..-+. |++ +|++++..+ .|+..+.+...+- ...+.
T Consensus 288 dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~---------~iqv~ 357 (668)
T COG4946 288 DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGY---------SIQVG 357 (668)
T ss_pred cEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCe---------eEEcC
Confidence 799999988765321111 001111111122222 444 678777765 5667777765543 22344
Q ss_pred CCCCeEEEEEeeCCcEEEEeccCC-eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEE
Q 024868 111 DAGPQKCLSFSVDGSRFAAGGVDG-HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW 189 (261)
Q Consensus 111 ~~~~v~~~~~s~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~ 189 (261)
+.+.|.-..+.-+++-++.|..|| .+-++|.++++. ......-+.|.++..+|+|++++.+.+...+.+.|+.+|+..
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~ 436 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR 436 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee
Confidence 566788888888888899999998 899999888775 445566678999999999999999999999999999999875
Q ss_pred EEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 190 ~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
..-+ ...+-|+.+.|+|++++ +.+..-.+-....|++||+.+++... .....+.-.+.+|.|||++|.
T Consensus 437 ~idk-S~~~lItdf~~~~nsr~-iAYafP~gy~tq~Iklydm~~~Kiy~-vTT~ta~DfsPaFD~d~ryLY 504 (668)
T COG4946 437 LIDK-SEYGLITDFDWHPNSRW-IAYAFPEGYYTQSIKLYDMDGGKIYD-VTTPTAYDFSPAFDPDGRYLY 504 (668)
T ss_pred Eecc-cccceeEEEEEcCCcee-EEEecCcceeeeeEEEEecCCCeEEE-ecCCcccccCcccCCCCcEEE
Confidence 4333 33446999999999998 33323334445689999999888664 344445557899999999885
No 236
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.63 E-value=6.6e-16 Score=113.20 Aligned_cols=133 Identities=9% Similarity=0.096 Sum_probs=100.9
Q ss_pred EEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEe-ccCCeEEEEEccCceE
Q 024868 68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRI 146 (261)
Q Consensus 68 ~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~ 146 (261)
-.+|||+|+++|+.+.. .+.|-|..+-+... .+.--..|..+.|..|..+++.+ ..++.|.+|++...+-
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q--------lf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew 83 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQ--------LFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW 83 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHH--------HHHHHHHhhheeeeccceeeeeeeeccceEEEEEeeccee
Confidence 36799999999998766 68888887765311 11112456778999988776655 5788999999988887
Q ss_pred EeeccccCCceeEEEEcCCCCEEE-EecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868 147 ILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (261)
Q Consensus 147 ~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 211 (261)
..++.....++.+++|||||+.++ +...+-.|.+|.+.+.+....-. ....+..++|+|||++
T Consensus 84 ~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~--pK~~~kg~~f~~dg~f 147 (447)
T KOG4497|consen 84 YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH--PKTNVKGYAFHPDGQF 147 (447)
T ss_pred EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc--cccCceeEEECCCCce
Confidence 777777778899999999997655 55568999999999877654332 2234788999999997
No 237
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.6e-14 Score=112.68 Aligned_cols=213 Identities=15% Similarity=0.205 Sum_probs=146.9
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC--CCCeEEEE
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCS 81 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~ 81 (261)
+|=|.|++|+.+ +.++++|+.|- ++.+||+-..++ ....-++|...|.++.|-| +.+.+++|
T Consensus 50 ~GCVN~LeWn~d---G~lL~SGSDD~--------r~ivWd~~~~Kl-----lhsI~TgHtaNIFsvKFvP~tnnriv~sg 113 (758)
T KOG1310|consen 50 TGCVNCLEWNAD---GELLASGSDDT--------RLIVWDPFEYKL-----LHSISTGHTANIFSVKFVPYTNNRIVLSG 113 (758)
T ss_pred cceecceeecCC---CCEEeecCCcc--------eEEeecchhcce-----eeeeecccccceeEEeeeccCCCeEEEec
Confidence 578999999986 56999999998 999999876553 1334578999999999988 45678899
Q ss_pred ecCCcEEEEEEeCCccc---cceeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCCeEEEEEccCceEE-------eec
Q 024868 82 TTNGGCKLFEVYGGATD---INLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRII-------LDE 150 (261)
Q Consensus 82 ~~dg~i~i~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~-------~~~ 150 (261)
..|..|+++|+...+.. ............|...|..++-.|++ +.+.+++.||+++-+|++..... ..+
T Consensus 114 AgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l 193 (758)
T KOG1310|consen 114 AGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSIL 193 (758)
T ss_pred cCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHH
Confidence 99999999999853221 11111112223355778888989987 78999999999999999753211 001
Q ss_pred cc---cCCceeEEEEcC-CCCEEEEecCCCcEEEEEccC--------Cc----------EEEEEeecCC-----------
Q 024868 151 PK---AHKSVLDMDFSL-DSEFLATTSTDGSARIWKTED--------GV----------AWTFLTRNSD----------- 197 (261)
Q Consensus 151 ~~---~~~~v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~--------~~----------~~~~~~~~~~----------- 197 (261)
.. .--...++..+| +..+|+.|+.|-..++||.+. +. ++..+...+-
T Consensus 194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~ 273 (758)
T KOG1310|consen 194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYI 273 (758)
T ss_pred HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccce
Confidence 11 112467899999 466889999999999999431 11 2222221110
Q ss_pred CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEE
Q 024868 198 EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI 237 (261)
Q Consensus 198 ~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~ 237 (261)
..++-+.|+|+|..+ +++-+. -.|+++|+..++..
T Consensus 274 ~~~t~vtfnpNGtEl----Lvs~~g-EhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 274 TCCTYVTFNPNGTEL----LVSWGG-EHVYLFDVNEDKSP 308 (758)
T ss_pred eeeEEEEECCCCcEE----EEeeCC-eEEEEEeecCCCCc
Confidence 014567899999983 233333 36999999877654
No 238
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.61 E-value=2.2e-13 Score=107.01 Aligned_cols=176 Identities=17% Similarity=0.155 Sum_probs=138.4
Q ss_pred CCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEe--------------------eCCcEEEEecc
Q 024868 73 PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFS--------------------VDGSRFAAGGV 132 (261)
Q Consensus 73 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--------------------~~~~~l~~~~~ 132 (261)
|...++|....||.+++|+...++....+. +...-.+...+..|. -|...++-|..
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~----p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~ 78 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFA----PIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP 78 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeec----cchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC
Confidence 456789999999999999998877533221 111123444444442 12235777778
Q ss_pred CCeEEEEEccCceEEeecc--ccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCC
Q 024868 133 DGHLRIMHWPSLRIILDEP--KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210 (261)
Q Consensus 133 d~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 210 (261)
.|.|.+|++..++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+....+.++.+..... .+.+++.+|||+
T Consensus 79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~-~~~sl~is~D~~ 157 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP-LVSSLCISPDGK 157 (541)
T ss_pred CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC-ccceEEEcCCCC
Confidence 8999999999888766554 4556899999999999999999999999999999999998887766 489999999999
Q ss_pred cceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeC-----CCEEe
Q 024868 211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD-----GKYLA 260 (261)
Q Consensus 211 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~d-----g~~la 260 (261)
. +++++ ++|++||+++++.+.++.+|.++|++++|..+ |.++.
T Consensus 158 ~-----l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vL 205 (541)
T KOG4547|consen 158 I-----LLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVL 205 (541)
T ss_pred E-----EEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceee
Confidence 7 45555 47999999999999999999999999999887 66653
No 239
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=1.1e-13 Score=115.67 Aligned_cols=233 Identities=13% Similarity=0.147 Sum_probs=150.1
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEE-------eeecCCCCCceEEEECCCCCe
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVT-------YVFDESEGDPMTIAVNPSGDD 77 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~ 77 (261)
..|+.+.+.... +..++.+|+.|| .|.+|+.-..... .+... -.+.+..+.=.-++|......
T Consensus 1110 t~Vs~l~liNe~-D~aLlLtas~dG--------vIRIwk~y~~~~~-~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~ 1179 (1387)
T KOG1517|consen 1110 TRVSDLELINEQ-DDALLLTASSDG--------VIRIWKDYADKWK-KPELVTAWSSLSDQLPGARGTGLVVDWQQQSGH 1179 (1387)
T ss_pred Cccceeeeeccc-chhheeeeccCc--------eEEEecccccccC-CceeEEeeccccccCccCCCCCeeeehhhhCCe
Confidence 356677776544 467888899999 6666655332210 11111 111222222355778876666
Q ss_pred EEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceE---Eeecccc
Q 024868 78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRI---ILDEPKA 153 (261)
Q Consensus 78 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~ 153 (261)
|+++++-..|+|||........... ......++++.-+. .|+.|++|..||.|++||.+.... +.....|
T Consensus 1180 Ll~tGd~r~IRIWDa~~E~~~~diP------~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h 1253 (1387)
T KOG1517|consen 1180 LLVTGDVRSIRIWDAHKEQVVADIP------YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREH 1253 (1387)
T ss_pred EEecCCeeEEEEEecccceeEeecc------cCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeeccc
Confidence 7766678899999998765422211 11234556655443 478999999999999999875432 3444555
Q ss_pred CCc--eeEEEEcCCCC-EEEEecCCCcEEEEEccCCcEEEEE--eecC--CCceEEEEEecCCCcceEEEEEeeCCCcEE
Q 024868 154 HKS--VLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFL--TRNS--DEKIELCRFSKDGTKPFLFCTVQRGDKALL 226 (261)
Q Consensus 154 ~~~--v~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~--~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i 226 (261)
... |..+.+.+.|- .|++++.||.|++||++.......+ ..+- ++..+++..+++... +++|+. +.|
T Consensus 1254 ~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapi-----iAsGs~-q~i 1327 (1387)
T KOG1517|consen 1254 NDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPI-----IASGSA-QLI 1327 (1387)
T ss_pred CCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCe-----eeecCc-ceE
Confidence 554 99999988665 4999999999999999974222222 2222 324899999999886 566666 899
Q ss_pred EEEECCCCeEEeeeecc-------CcCeeEEEEeeCCCEEe
Q 024868 227 AVYDISTWNKIGHKRLL-------RKPASVLSISLDGKYLA 260 (261)
Q Consensus 227 ~~~d~~~~~~~~~~~~~-------~~~v~~~~~s~dg~~la 260 (261)
+||++.. +.+..+... .+.+.+++|+|---.||
T Consensus 1328 kIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llA 1367 (1387)
T KOG1517|consen 1328 KIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLA 1367 (1387)
T ss_pred EEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhh
Confidence 9999864 443333322 25678999999655444
No 240
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=2e-13 Score=107.09 Aligned_cols=169 Identities=14% Similarity=0.146 Sum_probs=126.4
Q ss_pred EEEEecCCcEEEEEEeCCccccceeeeeCCCCCC-CCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecc-----
Q 024868 78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD-AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP----- 151 (261)
Q Consensus 78 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~----- 151 (261)
|.+++....|+-++++.+.. +.++.. .+.++++..++-..+|++|+.+|.|..||.++...+..+.
T Consensus 148 ly~~gsg~evYRlNLEqGrf--------L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v 219 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRF--------LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSV 219 (703)
T ss_pred EEEeecCcceEEEEcccccc--------ccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccccc
Confidence 44444555688888887764 333333 3788999999988899999999999999988765432221
Q ss_pred -ccCC-----ceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcE
Q 024868 152 -KAHK-----SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225 (261)
Q Consensus 152 -~~~~-----~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~ 225 (261)
.+.+ .|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-......+|..+.|.+.+..- .+...+...
T Consensus 220 ~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~----~v~S~Dk~~ 295 (703)
T KOG2321|consen 220 NSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQN----KVVSMDKRI 295 (703)
T ss_pred CCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCc----eEEecchHH
Confidence 1222 499999999999999999999999999999998876654455689999998874432 244556678
Q ss_pred EEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEE
Q 024868 226 LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL 259 (261)
Q Consensus 226 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 259 (261)
++|||-.+|+....+. ....+..+++-|++-++
T Consensus 296 ~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sGm~ 328 (703)
T KOG2321|consen 296 LKIWDECTGKPMASIE-PTSDLNDFCFVPGSGMF 328 (703)
T ss_pred hhhcccccCCceeecc-ccCCcCceeeecCCceE
Confidence 9999999999875444 34568888888876554
No 241
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.61 E-value=4.8e-13 Score=113.29 Aligned_cols=230 Identities=11% Similarity=0.081 Sum_probs=160.0
Q ss_pred CCCCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCcee-cCCeEEeeecCCCCCceEEEECCCCCeEE
Q 024868 1 MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY-TSPLVTYVFDESEGDPMTIAVNPSGDDFV 79 (261)
Q Consensus 1 ~~~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 79 (261)
+|+++.|..++.++. ...++++|+.|| .|..|+....... ........+.....++.++...+.++.+|
T Consensus 1045 ~Ehs~~v~k~a~s~~--~~s~FvsgS~DG--------tVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSE--HTSLFVSGSDDG--------TVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred hhccccccceeecCC--CCceEEEecCCc--------eEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence 366777777777664 257999999999 8888887543321 11122233333467899999999999999
Q ss_pred EEecCCcEEEEEEeCCccccc-eeeeeCCCCCCCCCeEEE-EEee-CCc-EEEEeccCCeEEEEEccCceEEeec--ccc
Q 024868 80 CSTTNGGCKLFEVYGGATDIN-LLAKKMPPLQDAGPQKCL-SFSV-DGS-RFAAGGVDGHLRIMHWPSLRIILDE--PKA 153 (261)
Q Consensus 80 ~~~~dg~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~-~~s~-~~~-~l~~~~~d~~i~~~d~~~~~~~~~~--~~~ 153 (261)
+++.||.|.+.+++-...... ............+.+.++ +|.. ++. .++.+..-+.|..||+++....+.. ...
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence 999999999999976322111 111112222333444433 3433 333 6777778889999999877654433 334
Q ss_pred CCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeC-CCcEEEEEECC
Q 024868 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG-DKALLAVYDIS 232 (261)
Q Consensus 154 ~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~-~d~~i~~~d~~ 232 (261)
++.|++++.+|.+.+++.|+..|.+.+||++-+.++..+......+++.+..+|--+.-- ..+.+++ ..+.|.+|++.
T Consensus 1195 hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S-~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQES-VSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCc-eEEEecccCCCceeeeecc
Confidence 578999999999999999999999999999999999888776667889888887655210 1134444 67889999999
Q ss_pred CCeEEeeee
Q 024868 233 TWNKIGHKR 241 (261)
Q Consensus 233 ~~~~~~~~~ 241 (261)
+|.....+.
T Consensus 1274 ~g~~~~vl~ 1282 (1431)
T KOG1240|consen 1274 TGLRQTVLW 1282 (1431)
T ss_pred cCcceEEEE
Confidence 886554443
No 242
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=2.6e-13 Score=101.65 Aligned_cols=188 Identities=14% Similarity=0.129 Sum_probs=139.7
Q ss_pred CCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccC--CeEEE
Q 024868 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVD--GHLRI 138 (261)
Q Consensus 62 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d--~~i~~ 138 (261)
.+..|-.++.. |+ .|++|..+|.+.+|..+.+..... ....+.....+..+.-++.. ..+++|+.. ..+.+
T Consensus 104 ~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss----~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lki 177 (412)
T KOG3881|consen 104 GTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSS----KLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKI 177 (412)
T ss_pred ccccccchhhc-CC-EEEEEecCCcEEEEeccCCccccc----cceeeecCCceeeeccCCCCCceEecCchhcccceee
Confidence 34555555543 33 677888999999999986543111 11122223456666666644 456668887 78999
Q ss_pred EEccCceEEeeccccC---------CceeEEEEcCC--CCEEEEecCCCcEEEEEccCC-cEEEEEeecCCCceEEEEEe
Q 024868 139 MHWPSLRIILDEPKAH---------KSVLDMDFSLD--SEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFS 206 (261)
Q Consensus 139 ~d~~~~~~~~~~~~~~---------~~v~~~~~s~~--~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~ 206 (261)
||+.+.+.++.-..-. -.++++.|-|. ...|++++.-+++++||.+.+ +++..+..... +++++...
T Consensus 178 wdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~-~is~~~l~ 256 (412)
T KOG3881|consen 178 WDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLEN-PISSTGLT 256 (412)
T ss_pred eecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccC-cceeeeec
Confidence 9999887766544322 13568889887 789999999999999999865 46666665444 69999999
Q ss_pred cCCCcceEEEEEeeCCCcEEEEEECCCCeEEee-eeccCcCeeEEEEeeCCCEEeC
Q 024868 207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 207 p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s~dg~~la~ 261 (261)
|+++. ++++..-+.+..||+++++.+.. +.+..+.++++..+|.+++||.
T Consensus 257 p~gn~-----Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las 307 (412)
T KOG3881|consen 257 PSGNF-----IYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLAS 307 (412)
T ss_pred CCCcE-----EEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEe
Confidence 99998 68888899999999999998765 7778899999999999999874
No 243
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=2.2e-12 Score=103.18 Aligned_cols=216 Identities=13% Similarity=0.123 Sum_probs=130.8
Q ss_pred ceeeEEEEEeeCCcceEEEEecCC-CCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSS-RASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST- 82 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 82 (261)
++.....|+|++ ..+++..+.+ +.. .||.+|..+++. ..+....+......|+|||+.++...
T Consensus 188 ~~~~~p~wSpDG--~~~i~y~s~~~~~~------~Iyv~dl~tg~~-------~~lt~~~g~~~~~~~SPDG~~la~~~~ 252 (419)
T PRK04043 188 GLNIFPKWANKE--QTAFYYTSYGERKP------TLYKYNLYTGKK-------EKIASSQGMLVVSDVSKDGSKLLLTMA 252 (419)
T ss_pred CCeEeEEECCCC--CcEEEEEEccCCCC------EEEEEECCCCcE-------EEEecCCCcEEeeEECCCCCEEEEEEc
Confidence 367788999975 3334443333 222 899999877663 23333455667788999999876543
Q ss_pred cC--CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-CC--eEEEEEccCceEEeeccccCCce
Q 024868 83 TN--GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DG--HLRIMHWPSLRIILDEPKAHKSV 157 (261)
Q Consensus 83 ~d--g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~v 157 (261)
.+ ..|+++++.++.. .. + ..+........|+|||+.|+..+. .+ .|++.|+.+++.........
T Consensus 253 ~~g~~~Iy~~dl~~g~~-~~-----L--T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--- 321 (419)
T PRK04043 253 PKGQPDIYLYDTNTKTL-TQ-----I--TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--- 321 (419)
T ss_pred cCCCcEEEEEECCCCcE-EE-----c--ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC---
Confidence 23 4677777766542 11 1 111122345689999998877753 22 68888888776633332211
Q ss_pred eEEEEcCCCCEEEEecCC---------CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEE
Q 024868 158 LDMDFSLDSEFLATTSTD---------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAV 228 (261)
Q Consensus 158 ~~~~~s~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~ 228 (261)
....|+|||++|+..+.. ..|.+.|+.+++.. .+... . ......|+|||+.++. ....+....+.+
T Consensus 322 ~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~-~~~~p~~SPDG~~I~f--~~~~~~~~~L~~ 396 (419)
T PRK04043 322 NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-G-VNQFPRFSSDGGSIMF--IKYLGNQSALGI 396 (419)
T ss_pred cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-C-CcCCeEECCCCCEEEE--EEccCCcEEEEE
Confidence 124899999988876543 36888898887653 34332 1 2346889999997432 222234456888
Q ss_pred EECCCCeEEeeeeccCcCeeEEEE
Q 024868 229 YDISTWNKIGHKRLLRKPASVLSI 252 (261)
Q Consensus 229 ~d~~~~~~~~~~~~~~~~v~~~~~ 252 (261)
.++...... .+....+.+...+|
T Consensus 397 ~~l~g~~~~-~l~~~~g~~~~p~W 419 (419)
T PRK04043 397 IRLNYNKSF-LFPLKVGKIQSIDW 419 (419)
T ss_pred EecCCCeeE-EeecCCCccCCCCC
Confidence 888654443 34444455555444
No 244
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=6.7e-12 Score=93.63 Aligned_cols=216 Identities=17% Similarity=0.236 Sum_probs=142.6
Q ss_pred CCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC---CcEEEEEEeCCccccceeeeeCCCCC
Q 024868 34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQ 110 (261)
Q Consensus 34 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~ 110 (261)
...|.+|.+|..++.+. ...+-.+.+.++-++|+|+++.|.++..+ |.+..|.++...-...++.. ....
T Consensus 15 s~gI~v~~ld~~~g~l~-----~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~--~~~~ 87 (346)
T COG2706 15 SQGIYVFNLDTKTGELS-----LLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR--QTLP 87 (346)
T ss_pred CCceEEEEEeCcccccc-----hhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec--cccC
Confidence 34456777776665542 22334566789999999999999887654 77888888764222222221 1222
Q ss_pred CCCCeEEEEEeeCCcEEEEec-cCCeEEEEEccCceEEe---eccccCC----------ceeEEEEcCCCCEEEEecC-C
Q 024868 111 DAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIIL---DEPKAHK----------SVLDMDFSLDSEFLATTST-D 175 (261)
Q Consensus 111 ~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~---~~~~~~~----------~v~~~~~s~~~~~l~~~~~-d 175 (261)
. .+...++++++|++++++. ..|.|.++.++....+. ....|.+ .+....+.|++++|++... -
T Consensus 88 g-~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~ 166 (346)
T COG2706 88 G-SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT 166 (346)
T ss_pred C-CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC
Confidence 2 3337899999999999987 56789999886532211 1122222 2788999999999988764 3
Q ss_pred CcEEEEEccCCcEEEEE--eecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC-eEEeeeec---------c
Q 024868 176 GSARIWKTEDGVAWTFL--TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-NKIGHKRL---------L 243 (261)
Q Consensus 176 ~~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~~---------~ 243 (261)
..|.+|++..|+....- ....+...+.+.|+|++++.| +...-+++|.+|..... ..+..++. .
T Consensus 167 Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY----~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g 242 (346)
T COG2706 167 DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAY----LVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTG 242 (346)
T ss_pred ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEE----EEeccCCEEEEEEEcCCCceEEEeeeeccCccccCC
Confidence 57999999977653322 113344589999999999854 34455788999998763 22222221 1
Q ss_pred CcCeeEEEEeeCCCEEeC
Q 024868 244 RKPASVLSISLDGKYLAM 261 (261)
Q Consensus 244 ~~~v~~~~~s~dg~~la~ 261 (261)
......+.++|||++|.+
T Consensus 243 ~~~~aaIhis~dGrFLYa 260 (346)
T COG2706 243 TNWAAAIHISPDGRFLYA 260 (346)
T ss_pred CCceeEEEECCCCCEEEE
Confidence 246778999999999863
No 245
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=8.2e-12 Score=93.17 Aligned_cols=238 Identities=11% Similarity=0.153 Sum_probs=150.0
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN- 84 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d- 84 (261)
.++-++|+|+. ..+.++. ..+ ..+.+..+.+|.+.+.+.. +....+.++ +...++++++|++++++...
T Consensus 41 nptyl~~~~~~--~~LY~v~-~~~---~~ggvaay~iD~~~G~Lt~--ln~~~~~g~--~p~yvsvd~~g~~vf~AnY~~ 110 (346)
T COG2706 41 NPTYLAVNPDQ--RHLYVVN-EPG---EEGGVAAYRIDPDDGRLTF--LNRQTLPGS--PPCYVSVDEDGRFVFVANYHS 110 (346)
T ss_pred CCceEEECCCC--CEEEEEE-ecC---CcCcEEEEEEcCCCCeEEE--eeccccCCC--CCeEEEECCCCCEEEEEEccC
Confidence 34557777752 2333333 221 1345688889988777622 122223322 34789999999999988764
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCC----------CCeEEEEEeeCCcEEEEec-cCCeEEEEEccCceEEeec---
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDA----------GPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDE--- 150 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~----------~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~--- 150 (261)
|.|.++-++........ .....|. .-+....+.|++++|++.. .--.|.+|++..++.....
T Consensus 111 g~v~v~p~~~dG~l~~~----v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~ 186 (346)
T COG2706 111 GSVSVYPLQADGSLQPV----VQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE 186 (346)
T ss_pred ceEEEEEcccCCccccc----eeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccc
Confidence 88999999664322211 1111121 2278889999999998875 2235999999876543211
Q ss_pred cccCCceeEEEEcCCCCEEEEec-CCCcEEEEEccCC-cEEEEEee--------cCCCceEEEEEecCCCcceEEEEEee
Q 024868 151 PKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDG-VAWTFLTR--------NSDEKIELCRFSKDGTKPFLFCTVQR 220 (261)
Q Consensus 151 ~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~-~~~~~~~~--------~~~~~v~~~~~~p~~~~~~~~~~~~~ 220 (261)
.......+.|.|+|++++.+..+ -+++|-+|..+.. .....++. ........+..+|||+++| ++.
T Consensus 187 v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLY----asN 262 (346)
T COG2706 187 VKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLY----ASN 262 (346)
T ss_pred cCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEE----Eec
Confidence 12233579999999999988766 4899999998863 22222221 1122467888999999853 344
Q ss_pred CCCcEEEEEECCC--CeE--EeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 221 GDKALLAVYDIST--WNK--IGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 221 ~~d~~i~~~d~~~--~~~--~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
.....|.+|.+.. +++ +.....+........|+|+|++|++
T Consensus 263 Rg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Lia 307 (346)
T COG2706 263 RGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIA 307 (346)
T ss_pred CCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEE
Confidence 4444788888753 332 2223344455789999999999874
No 246
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=1.1e-12 Score=109.80 Aligned_cols=237 Identities=12% Similarity=0.142 Sum_probs=150.0
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeee-cCCCCCceEEEECC--CCCeEEEEe
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF-DESEGDPMTIAVNP--SGDDFVCST 82 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~ 82 (261)
+-..+.|+|- ...++++..+. .|.+||-+.+..-. .... ......|+.+.+-. |...+++++
T Consensus 1066 ~pk~~~~hpf---~p~i~~ad~r~--------~i~vwd~e~~~~l~----~F~n~~~~~t~Vs~l~liNe~D~aLlLtas 1130 (1387)
T KOG1517|consen 1066 PPKTLKFHPF---EPQIAAADDRE--------RIRVWDWEKGRLLN----GFDNGAFPDTRVSDLELINEQDDALLLTAS 1130 (1387)
T ss_pred CCceeeecCC---CceeEEcCCcc--------eEEEEecccCceec----cccCCCCCCCccceeeeecccchhheeeec
Confidence 3455666663 34667776555 66677766554310 1011 11234688888854 556789999
Q ss_pred cCCcEEEEEEeCCc-cccceeeeeCC---CCCC-CCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCC-c
Q 024868 83 TNGGCKLFEVYGGA-TDINLLAKKMP---PLQD-AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-S 156 (261)
Q Consensus 83 ~dg~i~i~~~~~~~-~~~~~~~~~~~---~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~ 156 (261)
.||.|+||+-.... ...++...-.. .... .+.-.-+.|.....+|++++.-..|+|||.........+....+ .
T Consensus 1131 ~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~ 1210 (1387)
T KOG1517|consen 1131 SDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTL 1210 (1387)
T ss_pred cCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCcc
Confidence 99999999764432 22222211110 0111 11224467877665666666788999999988777666654443 5
Q ss_pred eeEEEEcC-CCCEEEEecCCCcEEEEEccCCc---EEEEEeecCC-CceEEEEEecCCCcceEEEEEeeCCCcEEEEEEC
Q 024868 157 VLDMDFSL-DSEFLATTSTDGSARIWKTEDGV---AWTFLTRNSD-EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231 (261)
Q Consensus 157 v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~-~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~ 231 (261)
++++.-+- .|+.+++|..||.|++||.+... .+.....|.. .+|..+.+.+.|-.. +++++.+|.|++||+
T Consensus 1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~e----lvSgs~~G~I~~~Dl 1286 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGE----LVSGSQDGDIQLLDL 1286 (1387)
T ss_pred ceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcc----eeeeccCCeEEEEec
Confidence 77776543 47999999999999999998643 3444554443 138889998866542 589999999999999
Q ss_pred CCCeEEeee--ecc---CcCeeEEEEeeCCCEEeC
Q 024868 232 STWNKIGHK--RLL---RKPASVLSISLDGKYLAM 261 (261)
Q Consensus 232 ~~~~~~~~~--~~~---~~~v~~~~~s~dg~~la~ 261 (261)
+........ ..+ ++.++++..+++...+|+
T Consensus 1287 R~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAs 1321 (1387)
T KOG1517|consen 1287 RMSSKETFLTIVAHWEYGSALTALTVHEHAPIIAS 1321 (1387)
T ss_pred ccCcccccceeeeccccCccceeeeeccCCCeeee
Confidence 974322211 122 234888888888877763
No 247
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.57 E-value=2e-12 Score=99.61 Aligned_cols=159 Identities=16% Similarity=0.228 Sum_probs=121.8
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC-cEEEEEEeCCccccceeeeeCCCCCCCCCeE
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG-GCKLFEVYGGATDINLLAKKMPPLQDAGPQK 116 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~ 116 (261)
+.+..++..+.. ..+ +|.+.|.-..+..+++-++.|..|| .+-++|..+++. ......-+.|.
T Consensus 342 kaFi~~~~~~~~-------iqv-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~--------kr~e~~lg~I~ 405 (668)
T COG4946 342 KAFIMRPWDGYS-------IQV-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV--------KRIEKDLGNIE 405 (668)
T ss_pred cEEEECCCCCee-------EEc-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE--------EEeeCCccceE
Confidence 566666655542 122 4667788888888888899999998 899999998874 22223457899
Q ss_pred EEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCC----cEEEEEccCCcEEEEE
Q 024868 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG----SARIWKTEDGVAWTFL 192 (261)
Q Consensus 117 ~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~ 192 (261)
.+..+|+|++++++.....+.++|+.++.....-....+-|....|||+++++|-+--+| .|+++|+.+++.....
T Consensus 406 av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 406 AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence 999999999999998888999999999987554444456799999999999999887665 6999999988876654
Q ss_pred eecCCCceEEEEEecCCCcceE
Q 024868 193 TRNSDEKIELCRFSKDGTKPFL 214 (261)
Q Consensus 193 ~~~~~~~v~~~~~~p~~~~~~~ 214 (261)
.... .-.+.+|.||++++|.
T Consensus 486 T~ta--~DfsPaFD~d~ryLYf 505 (668)
T COG4946 486 TPTA--YDFSPAFDPDGRYLYF 505 (668)
T ss_pred CCcc--cccCcccCCCCcEEEE
Confidence 4322 2456788888887654
No 248
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=2.8e-13 Score=109.21 Aligned_cols=239 Identities=14% Similarity=0.134 Sum_probs=164.5
Q ss_pred CCCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCC-------eEEeeecCCCCCceEEEECCC
Q 024868 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSP-------LVTYVFDESEGDPMTIAVNPS 74 (261)
Q Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~ 74 (261)
++.....|++|+.. ..++++||.+|.. ++...+.++......+ ...+.+.+|...|.-+.|+.+
T Consensus 12 PnnvkL~c~~WNke---~gyIAcgG~dGlL------KVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~ 82 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKE---SGYIACGGADGLL------KVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN 82 (1189)
T ss_pred CCCceEEEEEEccc---CCeEEecccccee------EEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc
Confidence 45678899999985 6799999999933 6666666554433322 234678999999999999999
Q ss_pred CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC
Q 024868 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH 154 (261)
Q Consensus 75 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 154 (261)
.+.|.+...+|-|.+|-+..+.-... ...-..++-|.++.|+.||..|+....||.|.+=.++ |..++...-..
T Consensus 83 ~QKLTtSDt~GlIiVWmlykgsW~EE-----MiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg 156 (1189)
T KOG2041|consen 83 NQKLTTSDTSGLIIVWMLYKGSWCEE-----MINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGKELKG 156 (1189)
T ss_pred cccccccCCCceEEEEeeecccHHHH-----HhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecchhcch
Confidence 99999999999999999988763221 2222345678999999999999999999998887664 44433322222
Q ss_pred CceeEEEEcCCCCEEEEecCCCcEEEEEccCC-------cEEEEEee---cCCCceEEEEEe--------cCCCcceEEE
Q 024868 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-------VAWTFLTR---NSDEKIELCRFS--------KDGTKPFLFC 216 (261)
Q Consensus 155 ~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~---~~~~~v~~~~~~--------p~~~~~~~~~ 216 (261)
.....+.|++|.+.++.+-.+|.++++|.+.. .+.....+ ..+..+..+.|. ||-..
T Consensus 157 ~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~----- 231 (1189)
T KOG2041|consen 157 QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPR----- 231 (1189)
T ss_pred heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCE-----
Confidence 24568899999999998888999999997531 11111111 111124455554 34444
Q ss_pred EEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 217 TVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 217 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
++.+-.+|.+.+..-.+......+. .+..+....|+++|..||+
T Consensus 232 lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAv 275 (1189)
T KOG2041|consen 232 LAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAV 275 (1189)
T ss_pred EEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEE
Confidence 4666677777776654433222222 3367788999999999985
No 249
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=3.8e-13 Score=105.60 Aligned_cols=180 Identities=15% Similarity=0.231 Sum_probs=135.2
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCC-----C
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD-----A 112 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~-----~ 112 (261)
.||.++.+.+.+ ...+.-..+.++++..++...+|++|+.+|.+-.||.+.......+... .....+ .
T Consensus 156 evYRlNLEqGrf------L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~-~~v~s~pg~~~~ 228 (703)
T KOG2321|consen 156 EVYRLNLEQGRF------LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA-SSVNSHPGGDAA 228 (703)
T ss_pred ceEEEEcccccc------ccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecc-cccCCCcccccc
Confidence 799999998886 2234444578999999999999999999999999999887653332211 111111 2
Q ss_pred CCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCC--ceeEEEEcCC--CCEEEEecCCCcEEEEEccCCcE
Q 024868 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK--SVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVA 188 (261)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~v~~~~~s~~--~~~l~~~~~d~~i~iwd~~~~~~ 188 (261)
..|+++.|+-+|-.+++|..+|.+.+||+++.+++.. ..|.. +|..+.|.+. ...+++. +...++|||-.+|+.
T Consensus 229 ~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 229 PSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKP 306 (703)
T ss_pred CcceEEEecCCceeEEeeccCCcEEEEEcccCCceee-cccCCccceeeecccccCCCceEEec-chHHhhhcccccCCc
Confidence 4589999999999999999999999999999888644 33333 7999999775 3344443 557899999999999
Q ss_pred EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868 189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (261)
Q Consensus 189 ~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~ 233 (261)
...+.... .+..+|+-|++-. ++++.++..+..|=+..
T Consensus 307 ~asiEpt~--~lND~C~~p~sGm-----~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 307 MASIEPTS--DLNDFCFVPGSGM-----FFTANESSKMHTYYIPS 344 (703)
T ss_pred eeeccccC--CcCceeeecCCce-----EEEecCCCcceeEEccc
Confidence 88887544 3899999999887 46666666666665543
No 250
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.55 E-value=3e-13 Score=112.55 Aligned_cols=185 Identities=16% Similarity=0.178 Sum_probs=142.5
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCC-----ceEEEECCCCCeEEEEecCCcEEEEEEe
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD-----PMTIAVNPSGDDFVCSTTNGGCKLFEVY 93 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~dg~i~i~~~~ 93 (261)
...++.+..+. .++.+|.....+.. ..+ +... ..-+.++++.-++++|+.-+.|.+|+..
T Consensus 99 ~k~i~l~~~~n--------s~~i~d~~~~~~~~------~i~-~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~ 163 (967)
T KOG0974|consen 99 NKKIALVTSRN--------SLLIRDSKNSSVLS------KIQ-SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH 163 (967)
T ss_pred cceEEEEEcCc--------eEEEEecccCceeh------hcC-CCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc
Confidence 34566666666 67777776655411 111 1111 2223346666788999999999999997
Q ss_pred CCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEe-eccccCCceeEEEEcCCCCEEEEe
Q 024868 94 GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL-DEPKAHKSVLDMDFSLDSEFLATT 172 (261)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~ 172 (261)
.... ......|.+.+..+.|+-||+++++.+.|+++++|++++.+... ..++|...+..+.|+|+ .++++
T Consensus 164 ~dn~-------p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~ 234 (967)
T KOG0974|consen 164 EDNK-------PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITV 234 (967)
T ss_pred ccCC-------cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEe
Confidence 3332 12345678999999999999999999999999999999988755 56678889999999998 89999
Q ss_pred cCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868 173 STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (261)
Q Consensus 173 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~ 233 (261)
+.|.+.++|+.+ ++.+..+..|....++.++..++... .++++.|+.+++||+..
T Consensus 235 gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~-----~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 235 GEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVII-----KVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceE-----EEeeccCcchhhhhhhc
Confidence 999999999764 55556888888778999999887776 79999999999999864
No 251
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.54 E-value=6.7e-13 Score=112.47 Aligned_cols=195 Identities=13% Similarity=0.106 Sum_probs=135.7
Q ss_pred eEEeeecCCCCCceEEEECCC-CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc
Q 024868 54 LVTYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV 132 (261)
Q Consensus 54 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 132 (261)
.....+..|...+..++.++. +.++++|+.||+|++|+...-.................+++..+.+.+.+..+|+++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 335677889999999998775 4999999999999999997654322222222222224678899999999999999999
Q ss_pred CCeEEEEEccCc--e-----EEeecccc-CCc-eeEEEEcC-CCC-EEEEecCCCcEEEEEccCCcEEEEEee--cCCCc
Q 024868 133 DGHLRIMHWPSL--R-----IILDEPKA-HKS-VLDMDFSL-DSE-FLATTSTDGSARIWKTEDGVAWTFLTR--NSDEK 199 (261)
Q Consensus 133 d~~i~~~d~~~~--~-----~~~~~~~~-~~~-v~~~~~s~-~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~ 199 (261)
||.|++.+++.. + ..+....+ .+. +..-++.. ... .++.+...+.|..||+++.....+++. .++ .
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG-~ 1197 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG-L 1197 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc-c
Confidence 999999998752 1 11111111 123 33344433 233 677888889999999997765554432 234 5
Q ss_pred eEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee-ccCcCeeEEEEee
Q 024868 200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISL 254 (261)
Q Consensus 200 v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~s~ 254 (261)
|++++.+|.+.+ ++.|...|.+.+||++=+.++.... .+..++..+..+|
T Consensus 1198 vTSi~idp~~~W-----lviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1198 VTSIVIDPWCNW-----LVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCP 1248 (1431)
T ss_pred eeEEEecCCceE-----EEEecCCceEEEEEeecCceeecccCcccCCcceEEeec
Confidence 999999999998 6889999999999999777664433 2335555555554
No 252
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.50 E-value=2.5e-10 Score=88.12 Aligned_cols=213 Identities=13% Similarity=0.118 Sum_probs=130.8
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec----------CCcEEEEEEeCCccccceeeeeCC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT----------NGGCKLFEVYGGATDINLLAKKMP 107 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~~~~~~~~~~~~~~~~~~ 107 (261)
.+..+|..+.++ ...+..-. ....+ ++||++.|+++.. +..|.+||..+.+....+......
T Consensus 28 ~v~ViD~~~~~v------~g~i~~G~-~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p 99 (352)
T TIGR02658 28 QVYTIDGEAGRV------LGMTDGGF-LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP 99 (352)
T ss_pred eEEEEECCCCEE------EEEEEccC-CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence 788889888765 22222111 22234 9999998877665 678999999998764333221111
Q ss_pred CCCCCCCeEEEEEeeCCcEEEEec-c-CCeEEEEEccCceEEeeccccC------------------C------------
Q 024868 108 PLQDAGPQKCLSFSVDGSRFAAGG-V-DGHLRIMHWPSLRIILDEPKAH------------------K------------ 155 (261)
Q Consensus 108 ~~~~~~~v~~~~~s~~~~~l~~~~-~-d~~i~~~d~~~~~~~~~~~~~~------------------~------------ 155 (261)
..........++++|||+++++.. . +..|.+.|+.+++.+..+.... +
T Consensus 100 ~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN 179 (352)
T ss_pred hhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCc
Confidence 111122345789999999999876 3 6889999987766543221100 0
Q ss_pred -ceeEE--------------EEcC-CCCEEEEecCCCcEEEEEccCC-----cEEEEEeec------CCCceEEEEEecC
Q 024868 156 -SVLDM--------------DFSL-DSEFLATTSTDGSARIWKTEDG-----VAWTFLTRN------SDEKIELCRFSKD 208 (261)
Q Consensus 156 -~v~~~--------------~~s~-~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~------~~~~v~~~~~~p~ 208 (261)
..... .|.+ +|+++..... |.|.+.|+... +....+... ......-++++|+
T Consensus 180 ~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d 258 (352)
T TIGR02658 180 PKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRA 258 (352)
T ss_pred eEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCC
Confidence 00010 2234 7777766655 99999996432 222222211 1112445999999
Q ss_pred CCcceEEEEEee-----CCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCC-EEe
Q 024868 209 GTKPFLFCTVQR-----GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK-YLA 260 (261)
Q Consensus 209 ~~~~~~~~~~~~-----~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~-~la 260 (261)
++++|+.+.-.+ ...+.|.++|..+++.+..+.. +..+..++++|||+ +|.
T Consensus 259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~ly 315 (352)
T TIGR02658 259 RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLY 315 (352)
T ss_pred CCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEE
Confidence 998653211000 1225899999999998876664 56889999999999 554
No 253
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.50 E-value=1.9e-11 Score=88.68 Aligned_cols=227 Identities=11% Similarity=0.082 Sum_probs=143.1
Q ss_pred ceEEEEecCCCCCC--CC--CceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC---CCC-eEEEEecCCcEEEE
Q 024868 19 VNLVVLGKSSRASS--SP--SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP---SGD-DFVCSTTNGGCKLF 90 (261)
Q Consensus 19 ~~~~~~g~~~~~~~--~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~-~l~~~~~dg~i~i~ 90 (261)
.+++|+|+..-.-+ +. ..-+++.|+....++.. .....-. .+..+..+.|.. +|. .++-+..+|.|.+|
T Consensus 24 ~~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~--l~~~q~~-dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~ 100 (339)
T KOG0280|consen 24 RNVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSP--LDTLQCT-DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLY 100 (339)
T ss_pred cceEEEeeEEecCCCCchheeccceEEEeecccccCc--cceeeee-cccccceeeeeeccCCccceeeeccccceEEEE
Confidence 34888886422111 11 12256666666655422 2222222 234567777753 555 45666778999999
Q ss_pred EEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE--EeeccccCCceeEEEEcC-CCC
Q 024868 91 EVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKSVLDMDFSL-DSE 167 (261)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~s~-~~~ 167 (261)
..........+..-....+. .....++.|++.+..++++..+|.+.+-+...... .+....|.-+.+-..|+. +.+
T Consensus 101 r~~~~~ss~~L~~ls~~ki~-~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pn 179 (339)
T KOG0280|consen 101 RNDEDESSVHLRGLSSKKIS-VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPN 179 (339)
T ss_pred eeccceeeeeecccchhhhh-heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCc
Confidence 88655432211110000000 01346788999999999999999998665443332 224556666788888876 567
Q ss_pred EEEEecCCCcEEEEEcc-CCcEEEE-EeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC-CeEEeeeeccC
Q 024868 168 FLATTSTDGSARIWKTE-DGVAWTF-LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHKRLLR 244 (261)
Q Consensus 168 ~l~~~~~d~~i~iwd~~-~~~~~~~-~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~ 244 (261)
.+++|++|+.+..||++ .++.+.. .+.|.. .|.++.-+|..... +++|+.|-.|++||.++ ++++. -....
T Consensus 180 lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~-GV~SI~ss~~~~~~----I~TGsYDe~i~~~DtRnm~kPl~-~~~v~ 253 (339)
T KOG0280|consen 180 LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS-GVVSIYSSPPKPTY----IATGSYDECIRVLDTRNMGKPLF-KAKVG 253 (339)
T ss_pred eEEecCCCceEEEEEecCCcceeeecceeeec-ceEEEecCCCCCce----EEEeccccceeeeehhcccCccc-cCccc
Confidence 89999999999999999 4444444 334444 48888877754431 79999999999999994 55553 33345
Q ss_pred cCeeEEEEeeC
Q 024868 245 KPASVLSISLD 255 (261)
Q Consensus 245 ~~v~~~~~s~d 255 (261)
+.|+.+.++|.
T Consensus 254 GGVWRi~~~p~ 264 (339)
T KOG0280|consen 254 GGVWRIKHHPE 264 (339)
T ss_pred cceEEEEecch
Confidence 88999998885
No 254
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.49 E-value=6.6e-12 Score=98.68 Aligned_cols=172 Identities=15% Similarity=0.202 Sum_probs=115.4
Q ss_pred CeE-EEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCC-eEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecccc
Q 024868 76 DDF-VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGP-QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153 (261)
Q Consensus 76 ~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 153 (261)
+++ ++-..++.|.+.|..+.+... .+..... ...+.|+|||+++++++.||.|.++|+.+++.+......
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~--------~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G 77 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVA--------RIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG 77 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEE--------EEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S
T ss_pred cEEEEEecCCCEEEEEECCCCeEEE--------EEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC
Confidence 344 344567999999988776422 2222222 345789999999999999999999999999987666543
Q ss_pred CCceeEEEEcCCCCEEEEec-CCCcEEEEEccCCcEEEEEeecC------CCceEEEEEecCCCcceEEEEEeeCCCcEE
Q 024868 154 HKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLTRNS------DEKIELCRFSKDGTKPFLFCTVQRGDKALL 226 (261)
Q Consensus 154 ~~~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i 226 (261)
....++++|+||++++++. ..+.+.++|.++.++++.+.... ...+..+..+|.... | +++--+.+.|
T Consensus 78 -~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~-f---Vv~lkd~~~I 152 (369)
T PF02239_consen 78 -GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE-F---VVNLKDTGEI 152 (369)
T ss_dssp -SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE-E---EEEETTTTEE
T ss_pred -CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCE-E---EEEEccCCeE
Confidence 3568899999999998776 57999999999999998876431 234677877888875 2 4555667899
Q ss_pred EEEECCCCeEEe-eeeccCcCeeEEEEeeCCCEEe
Q 024868 227 AVYDISTWNKIG-HKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 227 ~~~d~~~~~~~~-~~~~~~~~v~~~~~s~dg~~la 260 (261)
.+.|....+.+. ..........+..|+|+|+|++
T Consensus 153 ~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~ 187 (369)
T PF02239_consen 153 WVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFL 187 (369)
T ss_dssp EEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEE
T ss_pred EEEEeccccccceeeecccccccccccCcccceee
Confidence 999987765442 2233446778999999999875
No 255
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.47 E-value=8e-14 Score=113.73 Aligned_cols=190 Identities=14% Similarity=0.130 Sum_probs=137.9
Q ss_pred eecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEE
Q 024868 58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR 137 (261)
Q Consensus 58 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 137 (261)
.+.+|...|+|+.|...|.++++|++|..++||..++..+. ...-.|.+.++.++.+.+..++++++.|..|+
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l-------As~rGhs~ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL-------ASCRGHSGDITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh-------ccCCCCccccchhccchhhhhhhhcccCceEE
Confidence 46689999999999999999999999999999998887751 22334568899999999999999999999999
Q ss_pred EEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccC--------------CcEEEEEeecC-------
Q 024868 138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED--------------GVAWTFLTRNS------- 196 (261)
Q Consensus 138 ~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~--------------~~~~~~~~~~~------- 196 (261)
+|-+..+..+..+.+|.+.|++++|+|-. +.+.||++++||.+- +.....+....
T Consensus 258 vWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred EEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence 99999999988888999999999999954 778899999999871 00110000000
Q ss_pred -----CC---ceEEEEEecCCCcceEE-------EEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEE
Q 024868 197 -----DE---KIELCRFSKDGTKPFLF-------CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL 259 (261)
Q Consensus 197 -----~~---~v~~~~~~p~~~~~~~~-------~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 259 (261)
.+ ....++|....- .|+. ..+++-.+-.+.+|++.+|...+....|...+..+.++|-+..+
T Consensus 334 gs~d~ea~n~e~~~l~~~~~~l-if~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri 410 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQLAWRSNLL-IFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRI 410 (1113)
T ss_pred ccCCcccccchhhHhhhhccce-EEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHh
Confidence 00 011111211110 0000 02334456678899999998887778888888888888855443
No 256
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.46 E-value=3.3e-11 Score=95.02 Aligned_cols=192 Identities=14% Similarity=0.109 Sum_probs=144.1
Q ss_pred cceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEE------CC--------------CCCe
Q 024868 18 NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV------NP--------------SGDD 77 (261)
Q Consensus 18 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~--------------~~~~ 77 (261)
...++|...++| .+..|+....++..+-.+...+ ++...+..| +| +-..
T Consensus 4 ~~~~~A~~~~~g--------~l~iw~t~~~~~~~e~~p~~~~---s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~ 72 (541)
T KOG4547|consen 4 ALDYFALSTGDG--------RLRIWDTAKNQLQQEFAPIASL---SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSM 72 (541)
T ss_pred hhheEeecCCCC--------eEEEEEccCceeeeeeccchhc---cCcceeEEEEEEeccchHHHHhHHHHhhccCCceE
Confidence 366888888888 8999998877763322222222 233444444 22 2234
Q ss_pred EEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCce
Q 024868 78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV 157 (261)
Q Consensus 78 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v 157 (261)
++-|...|.|.+|+...++...+ ...-.|.+.|.++.++.+-..|.+++.|..+..|+......+.........+
T Consensus 73 lvlgt~~g~v~~ys~~~g~it~~-----~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~ 147 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYSVAGGEITAK-----LSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLV 147 (541)
T ss_pred EEeecCCccEEEEEecCCeEEEE-----EecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCcc
Confidence 66777789999999998875333 3334567899999999999999999999999999999988888877777789
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecC-----CCcceEEEEEeeCCCcEEEEEECC
Q 024868 158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD-----GTKPFLFCTVQRGDKALLAVYDIS 232 (261)
Q Consensus 158 ~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~-----~~~~~~~~~~~~~~d~~i~~~d~~ 232 (261)
.+++.+|||..+++++ ++|++||+++++.+..+.+|.. +|+++.|-.+ |.++ +.+...+.-+.+|-++
T Consensus 148 ~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~v----Lssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 148 SSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYV----LSSAAAERGITVWVVE 220 (541)
T ss_pred ceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCc-ceEEEEEEEecccccccee----eeccccccceeEEEEE
Confidence 9999999999999986 7999999999999999998765 7999999887 6662 3444444456666654
No 257
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.45 E-value=8.5e-12 Score=104.16 Aligned_cols=175 Identities=12% Similarity=0.132 Sum_probs=123.6
Q ss_pred ECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeec
Q 024868 71 VNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE 150 (261)
Q Consensus 71 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 150 (261)
+.-+.++++....+..+.+||........+....+... -....-+.++++.-++++|+.-+.|.+|+....+....+
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~---l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l 171 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCT---LYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRL 171 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecccCceehhcCCCceEE---EEeEEEEeccCcEEEEEeccccccEEEEeccccCCccee
Confidence 33445677777888889999987765422211111000 012233445667778999999999999998744443457
Q ss_pred cccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEE-EEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEE
Q 024868 151 PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY 229 (261)
Q Consensus 151 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~ 229 (261)
.+|.+.+.++.|+.||+++++.|+|.++++|++.+.+... ..-+| .+.++.++|+|+ . ++++++|.+.++|
T Consensus 172 ~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH-saRvw~~~~~~n--~-----i~t~gedctcrvW 243 (967)
T KOG0974|consen 172 KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGH-SARVWACCFLPN--R-----IITVGEDCTCRVW 243 (967)
T ss_pred cccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccc-cceeEEEEeccc--e-----eEEeccceEEEEE
Confidence 7888999999999999999999999999999999988766 44444 447999999998 4 6999999999999
Q ss_pred ECCCCeEEeeeeccC-cCeeEEEEeeCCC
Q 024868 230 DISTWNKIGHKRLLR-KPASVLSISLDGK 257 (261)
Q Consensus 230 d~~~~~~~~~~~~~~-~~v~~~~~s~dg~ 257 (261)
+... +.+..+..|. ..+..++..++.-
T Consensus 244 ~~~~-~~l~~y~~h~g~~iw~~~~~~~~~ 271 (967)
T KOG0974|consen 244 GVNG-TQLEVYDEHSGKGIWKIAVPIGVI 271 (967)
T ss_pred eccc-ceehhhhhhhhcceeEEEEcCCce
Confidence 7653 3333444443 4566666655443
No 258
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=4e-11 Score=94.12 Aligned_cols=224 Identities=15% Similarity=0.225 Sum_probs=140.5
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEE-EEe-
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV-CST- 82 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~- 82 (261)
..|..++++|.|+...+.+.--..+ |.+..++||.+-..... .+.....+ ....=-.+.|++-|.-|+ .++
T Consensus 166 ~~i~~f~lSpgp~~~~vAvyvPe~k--GaPa~vri~~~~~~~~~---~~~a~ksF--Fkadkvqm~WN~~gt~LLvLast 238 (566)
T KOG2315|consen 166 SGITMLSLSPGPEPPFVAVYVPEKK--GAPASVRIYKYPEEGQH---QPVANKSF--FKADKVQMKWNKLGTALLVLAST 238 (566)
T ss_pred cceeeEEecCCCCCceEEEEccCCC--CCCcEEEEecccccccc---chhhhccc--cccceeEEEeccCCceEEEEEEE
Confidence 3466677777764333333333333 56777778777622211 11111111 112223577888766332 222
Q ss_pred -cC---------CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEe--ccCCeEEEEEccCceEEeec
Q 024868 83 -TN---------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG--GVDGHLRIMHWPSLRIILDE 150 (261)
Q Consensus 83 -~d---------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~d~~i~~~d~~~~~~~~~~ 150 (261)
-| .++++.++++... ...+...++|.++.|+|+++.++++ -.--.+.++|++ ++.+..+
T Consensus 239 dVDktn~SYYGEq~Lyll~t~g~s~--------~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df 309 (566)
T KOG2315|consen 239 DVDKTNASYYGEQTLYLLATQGESV--------SVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF 309 (566)
T ss_pred eecCCCccccccceEEEEEecCceE--------EEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC
Confidence 12 3688888874443 3345567999999999999887765 355679999974 5655544
Q ss_pred cccCCceeEEEEcCCCCEEEEecCC---CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeC----CC
Q 024868 151 PKAHKSVLDMDFSLDSEFLATTSTD---GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG----DK 223 (261)
Q Consensus 151 ~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~----~d 223 (261)
. .++-..+-|+|.|++++.++-+ |.+-|||+.+.+++..+... ..+-+.|+|||+++ + .++.+ .|
T Consensus 310 ~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~---~tt~~eW~PdGe~f-l--TATTaPRlrvd 381 (566)
T KOG2315|consen 310 P--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA---NTTVFEWSPDGEYF-L--TATTAPRLRVD 381 (566)
T ss_pred C--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC---CceEEEEcCCCcEE-E--EEeccccEEec
Confidence 3 4566788999999999887754 78999999998888877643 25668999999983 2 22322 47
Q ss_pred cEEEEEECCCCeEEeeeeccCcCeeEEEEee
Q 024868 224 ALLAVYDISTWNKIGHKRLLRKPASVLSISL 254 (261)
Q Consensus 224 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~ 254 (261)
+.++||+.. |..+...... .....+.|-|
T Consensus 382 Ng~Kiwhyt-G~~l~~~~f~-sEL~qv~W~P 410 (566)
T KOG2315|consen 382 NGIKIWHYT-GSLLHEKMFK-SELLQVEWRP 410 (566)
T ss_pred CCeEEEEec-Cceeehhhhh-HhHhheeeee
Confidence 789999985 5554322221 2566777765
No 259
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.43 E-value=7.9e-11 Score=87.42 Aligned_cols=238 Identities=13% Similarity=0.169 Sum_probs=148.0
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCC------------CCceEEEE
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE------------GDPMTIAV 71 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~ 71 (261)
..-|.++.|... +.++++|..+| ++-.|......-. +-.....++.|. ..|..+.|
T Consensus 25 adiis~vef~~~---Ge~LatGdkgG--------RVv~f~r~~~~~~-ey~~~t~fqshepEFDYLkSleieEKinkIrw 92 (433)
T KOG1354|consen 25 ADIISAVEFDHY---GERLATGDKGG--------RVVLFEREKLYKG-EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRW 92 (433)
T ss_pred hcceeeEEeecc---cceEeecCCCC--------eEEEeeccccccc-ceeeeeeeeccCcccchhhhhhhhhhhhhcee
Confidence 345778888875 66999999999 6666654332210 111122233333 34889999
Q ss_pred CCCCC--eEEEEecCCcEEEEEEeCCccccc-------------------eee----------eeCCCCCCCCCeEEEEE
Q 024868 72 NPSGD--DFVCSTTNGGCKLFEVYGGATDIN-------------------LLA----------KKMPPLQDAGPQKCLSF 120 (261)
Q Consensus 72 ~~~~~--~l~~~~~dg~i~i~~~~~~~~~~~-------------------~~~----------~~~~~~~~~~~v~~~~~ 120 (261)
.++++ .++..+.|.+|++|.+........ .+. .....-.|.--|+++.+
T Consensus 93 ~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~ 172 (433)
T KOG1354|consen 93 LDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISV 172 (433)
T ss_pred cCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeee
Confidence 88654 455667899999999976543110 000 00111123445789999
Q ss_pred eeCCcEEEEeccCCeEEEEEccCceE---EeeccccC-----CceeEEEEcCC-CCEEEEecCCCcEEEEEccCCcEE--
Q 024868 121 SVDGSRFAAGGVDGHLRIMHWPSLRI---ILDEPKAH-----KSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAW-- 189 (261)
Q Consensus 121 s~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~-----~~v~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~-- 189 (261)
+.|+..++++ .|=.|.+|.++-... +..+..+. .-|++..|+|. -+.++-.+..|+|++-|++.....
T Consensus 173 NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~ 251 (433)
T KOG1354|consen 173 NSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA 251 (433)
T ss_pred cCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcc
Confidence 9999999888 677899998864322 22333332 24788999994 567777778899999999843211
Q ss_pred --EEEeecC-----------CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC-CCeEEeeeeccCc----------
Q 024868 190 --TFLTRNS-----------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRK---------- 245 (261)
Q Consensus 190 --~~~~~~~-----------~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~-~~~~~~~~~~~~~---------- 245 (261)
+.+.... -..|..+.|+++|++ +++... -+|++||+. ..+++.+.+.|..
T Consensus 252 hsKlfEepedp~~rsffseiIsSISDvKFs~sGry-----ilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYE 325 (433)
T KOG1354|consen 252 HSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRY-----ILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYE 325 (433)
T ss_pred hhhhhccccCCcchhhHHHHhhhhhceEEccCCcE-----EEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhh
Confidence 1111111 124788999999998 454443 589999994 4556666665531
Q ss_pred -----CeeEEEEeeCCCEEe
Q 024868 246 -----PASVLSISLDGKYLA 260 (261)
Q Consensus 246 -----~v~~~~~s~dg~~la 260 (261)
.-..++|+-++.+++
T Consensus 326 nD~IfdKFec~~sg~~~~v~ 345 (433)
T KOG1354|consen 326 NDAIFDKFECSWSGNDSYVM 345 (433)
T ss_pred ccchhheeEEEEcCCcceEe
Confidence 113477887776654
No 260
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.42 E-value=2.9e-09 Score=79.86 Aligned_cols=221 Identities=16% Similarity=0.145 Sum_probs=137.5
Q ss_pred EEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEEC-CCCCeEEEEecCCcE
Q 024868 9 CGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVN-PSGDDFVCSTTNGGC 87 (261)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i 87 (261)
+..|.+. .+.++++.-..+ +|+.+++.+... ..+... ....+++. +++ .|+.+...+ +
T Consensus 4 gp~~d~~--~g~l~~~D~~~~--------~i~~~~~~~~~~-------~~~~~~--~~~G~~~~~~~g-~l~v~~~~~-~ 62 (246)
T PF08450_consen 4 GPVWDPR--DGRLYWVDIPGG--------RIYRVDPDTGEV-------EVIDLP--GPNGMAFDRPDG-RLYVADSGG-I 62 (246)
T ss_dssp EEEEETT--TTEEEEEETTTT--------EEEEEETTTTEE-------EEEESS--SEEEEEEECTTS-EEEEEETTC-E
T ss_pred ceEEECC--CCEEEEEEcCCC--------EEEEEECCCCeE-------EEEecC--CCceEEEEccCC-EEEEEEcCc-e
Confidence 3566653 366777776677 999999988763 112211 26777887 565 455555555 6
Q ss_pred EEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC--------CeEEEEEccCceEEeeccccCCceeE
Q 024868 88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--------GHLRIMHWPSLRIILDEPKAHKSVLD 159 (261)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~~~~~~~~v~~ 159 (261)
.++|..+++.... ... ..........+++++.|+|++.++.... |.+..++.. ++. ......-.....
T Consensus 63 ~~~d~~~g~~~~~-~~~-~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNG 138 (246)
T PF08450_consen 63 AVVDPDTGKVTVL-ADL-PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNG 138 (246)
T ss_dssp EEEETTTTEEEEE-EEE-ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEE
T ss_pred EEEecCCCcEEEE-eec-cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccc
Confidence 6668777643111 111 1111124567899999999977665432 557777765 443 333333445789
Q ss_pred EEEcCCCCEEE-EecCCCcEEEEEccCCcE----EEEEeecCC--CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868 160 MDFSLDSEFLA-TTSTDGSARIWKTEDGVA----WTFLTRNSD--EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (261)
Q Consensus 160 ~~~s~~~~~l~-~~~~d~~i~iwd~~~~~~----~~~~~~~~~--~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~ 232 (261)
++|+|+++.|+ +-+..+.|..+++..... ...+..... ...-.+++..+|+. .++....+.|.++|.+
T Consensus 139 i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l-----~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 139 IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL-----WVADWGGGRIVVFDPD 213 (246)
T ss_dssp EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E-----EEEEETTTEEEEEETT
T ss_pred eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE-----EEEEcCCCEEEEECCC
Confidence 99999998775 556778899999863221 122211111 13778999999986 2444456789999987
Q ss_pred CCeEEeeeeccCcCeeEEEEe-eCCCEEe
Q 024868 233 TWNKIGHKRLLRKPASVLSIS-LDGKYLA 260 (261)
Q Consensus 233 ~~~~~~~~~~~~~~v~~~~~s-~dg~~la 260 (261)
|+.+..+......+++++|. ++.+.|.
T Consensus 214 -G~~~~~i~~p~~~~t~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 214 -GKLLREIELPVPRPTNCAFGGPDGKTLY 241 (246)
T ss_dssp -SCEEEEEE-SSSSEEEEEEESTTSSEEE
T ss_pred -ccEEEEEcCCCCCEEEEEEECCCCCEEE
Confidence 88887777665689999995 6766654
No 261
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.42 E-value=2.3e-10 Score=82.32 Aligned_cols=198 Identities=16% Similarity=0.082 Sum_probs=128.5
Q ss_pred eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC-CCeEEEEecCCcEEEEEEeCCccc
Q 024868 20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATD 98 (261)
Q Consensus 20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~ 98 (261)
.+++.||..| +.-.|.+.+.+. ..+....|...|+-+.=..+ .-.+..++.|.++++.+++.+...
T Consensus 85 ~~la~gG~~g--------~fd~~~~~tn~~-----h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 85 VTLADGGASG--------QFDLFACNTNDG-----HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred cEEEeccccc--------eeeeecccCccc-----ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 4677887777 666666654432 12233334443332221112 224566788999999999876531
Q ss_pred cceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE-Eee-c-cccCCceeEEEEcCCCCEEEEecCC
Q 024868 99 INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-ILD-E-PKAHKSVLDMDFSLDSEFLATTSTD 175 (261)
Q Consensus 99 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-~~~-~-~~~~~~v~~~~~s~~~~~l~~~~~d 175 (261)
...- .+ .-.+.++.+++|++++++.+....|..|.+..... +.. . ......-.+.+|+.....+|++..|
T Consensus 152 ~~~h------~~-~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qd 224 (344)
T KOG4532|consen 152 FAVH------NQ-NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQD 224 (344)
T ss_pred ceee------cc-ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecC
Confidence 1110 00 12378899999999999999999999999875432 222 1 1222345788999999999999999
Q ss_pred CcEEEEEccCCcEEE----EEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868 176 GSARIWKTEDGVAWT----FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (261)
Q Consensus 176 ~~i~iwd~~~~~~~~----~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~ 240 (261)
|.+.|||++...... ....++.+.++.+.|+|-|..-+ ++-...-+.+.+.|+++++..+.+
T Consensus 225 g~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDL---Lf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 225 GTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDL---LFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred CcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceE---EEEecCcceEEEEEcccCceeeEE
Confidence 999999998643222 22345566799999999776532 344555678999999988765433
No 262
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.39 E-value=1.3e-11 Score=93.12 Aligned_cols=166 Identities=15% Similarity=0.155 Sum_probs=117.3
Q ss_pred CceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC---eEEEEEc
Q 024868 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG---HLRIMHW 141 (261)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~~~d~ 141 (261)
....+..+++++++|++..+....++++.......++. .........+.+.|..+...+..+..-| .+.+|..
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~----~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLL----DVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceee----eEeecccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 34556678889999998888888888887665422221 1112233445566666555555554444 4555554
Q ss_pred cCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeC
Q 024868 142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG 221 (261)
Q Consensus 142 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~ 221 (261)
..+.. ..+.+|-+.+..++|+||+++|+++..|..|++-....--.+..+...+..-|..++.-++-. +++++
T Consensus 140 ~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~------LlS~s 212 (390)
T KOG3914|consen 140 DSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL------LLSGS 212 (390)
T ss_pred cccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce------eeecC
Confidence 44433 456677789999999999999999999999999888777777777664444699998876543 58999
Q ss_pred CCcEEEEEECCCCeEEeeee
Q 024868 222 DKALLAVYDISTWNKIGHKR 241 (261)
Q Consensus 222 ~d~~i~~~d~~~~~~~~~~~ 241 (261)
.|+++++||+++|+.+.++.
T Consensus 213 GD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 213 GDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CCCcEEEEecccCCcccccc
Confidence 99999999999999875443
No 263
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.38 E-value=9.2e-11 Score=85.24 Aligned_cols=209 Identities=15% Similarity=0.089 Sum_probs=130.7
Q ss_pred eeeEEEEEeeCCcce-EEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 6 TVTCGSWIKRPENVN-LVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
.++.+.|...+.... .++.+...| .+.++..+.........++....+. .....++.|++.+..++++..+
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G------~i~~~r~~~~~ss~~L~~ls~~ki~--~~~~lslD~~~~~~~i~vs~s~ 142 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARG------QIQLYRNDEDESSVHLRGLSSKKIS--VVEALSLDISTSGTKIFVSDSR 142 (339)
T ss_pred ccceeeeeeccCCccceeeeccccc------eEEEEeeccceeeeeecccchhhhh--heeeeEEEeeccCceEEEEcCC
Confidence 355666766554333 444555555 2244444443333211221111111 1135678899999999999888
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEcc-CceEEee-ccccCCceeEEE
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWP-SLRIILD-EPKAHKSVLDMD 161 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~-~~~~~~~-~~~~~~~v~~~~ 161 (261)
|.+.+-+...... ...+..-.|.-+.....|+- +.+.+.+|+.|+.+.-||++ .++.+.. ...|...|.++.
T Consensus 143 G~~~~v~~t~~~l-----e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ 217 (339)
T KOG0280|consen 143 GSISGVYETEMVL-----EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIY 217 (339)
T ss_pred CcEEEEecceeee-----eecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEe
Confidence 9888544433321 11122233455667777876 45789999999999999998 3444444 345666899998
Q ss_pred EcC-CCCEEEEecCCCcEEEEEcc-CCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868 162 FSL-DSEFLATTSTDGSARIWKTE-DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (261)
Q Consensus 162 ~s~-~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~ 233 (261)
-+| .+.++++|+.|..|++||.+ .++++..-.. .+.|+.+.++|.-...+ ++++..+| .+|-+...
T Consensus 218 ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v--~GGVWRi~~~p~~~~~l---L~~CMh~G-~ki~~~~~ 285 (339)
T KOG0280|consen 218 SSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV--GGGVWRIKHHPEIFHRL---LAACMHNG-AKILDSSD 285 (339)
T ss_pred cCCCCCceEEEeccccceeeeehhcccCccccCcc--ccceEEEEecchhhhHH---HHHHHhcC-ceEEEecc
Confidence 877 68899999999999999999 5777765443 34599999999765321 24444444 56666554
No 264
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=2.1e-10 Score=90.19 Aligned_cols=204 Identities=13% Similarity=0.118 Sum_probs=128.7
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCC--CeEEE-----EecCCcEEEEEEeCCccccceeeeeCCCCC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG--DDFVC-----STTNGGCKLFEVYGGATDINLLAKKMPPLQ 110 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~-----~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 110 (261)
+++.|+..+-. ...-+-|...+..+.++|.+ ..+++ .+.-+.|+||....... .... ....+-
T Consensus 147 ev~f~~~~~f~-------~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~-~~~~--a~ksFF 216 (566)
T KOG2315|consen 147 EVQFYDLGSFK-------TIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ-HQPV--ANKSFF 216 (566)
T ss_pred eEEEEecCCcc-------ceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc-cchh--hhcccc
Confidence 66777766533 11223346778899998863 34443 23346899998863221 1100 011111
Q ss_pred CCCCeEEEEEeeCCcEE-EEec--cC---------CeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEe--cCCC
Q 024868 111 DAGPQKCLSFSVDGSRF-AAGG--VD---------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT--STDG 176 (261)
Q Consensus 111 ~~~~v~~~~~s~~~~~l-~~~~--~d---------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~d~ 176 (261)
..+. ..+.|++-|.-| +.++ .| .+++++++. +.....-....++|+++.|+|+++-++++ -.=.
T Consensus 217 kadk-vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPA 294 (566)
T KOG2315|consen 217 KADK-VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPA 294 (566)
T ss_pred ccce-eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCCceEEEECCCCCEEEEEEecccc
Confidence 1222 457899876532 2222 22 368888877 44333344557899999999999877654 3456
Q ss_pred cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCC
Q 024868 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG 256 (261)
Q Consensus 177 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg 256 (261)
.+.|||++ +.++..+.. ++-+++-|+|.|+++.+ .--|.-.|.+-+||+.+.+++..+... ..+-+.|+|||
T Consensus 295 kvtifnlr-~~~v~df~e---gpRN~~~fnp~g~ii~l--AGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdG 366 (566)
T KOG2315|consen 295 KVTIFNLR-GKPVFDFPE---GPRNTAFFNPHGNIILL--AGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDG 366 (566)
T ss_pred eEEEEcCC-CCEeEeCCC---CCccceEECCCCCEEEE--eecCCCCCceEEEeccchhhccccccC--CceEEEEcCCC
Confidence 89999986 677766642 35678899999998321 223445789999999998877655443 34568999999
Q ss_pred CEEeC
Q 024868 257 KYLAM 261 (261)
Q Consensus 257 ~~la~ 261 (261)
+++++
T Consensus 367 e~flT 371 (566)
T KOG2315|consen 367 EYFLT 371 (566)
T ss_pred cEEEE
Confidence 99864
No 265
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=4e-12 Score=98.07 Aligned_cols=213 Identities=15% Similarity=0.156 Sum_probs=149.3
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCC---CceEEEECCCC-CeE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG---DPMTIAVNPSG-DDF 78 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~-~~l 78 (261)
..+||..++..|.. ...+.+++.++ .+..+|.......... . .-..+.. ....++..|.. ..+
T Consensus 231 h~g~vhklav~p~s--p~~f~S~geD~--------~v~~~Dlr~~~pa~~~--~-cr~~~~~~~v~L~~Ia~~P~nt~~f 297 (559)
T KOG1334|consen 231 HEGPVHKLAVEPDS--PKPFLSCGEDA--------VVFHIDLRQDVPAEKF--V-CREADEKERVGLYTIAVDPRNTNEF 297 (559)
T ss_pred ccCccceeeecCCC--CCccccccccc--------ceeeeeeccCCcccee--e-eeccCCccceeeeeEecCCCCcccc
Confidence 46788888887763 56677888888 8888887655421111 1 1122222 46788899954 478
Q ss_pred EEEecCCcEEEEEEeCCccc------cceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC--c------
Q 024868 79 VCSTTNGGCKLFEVYGGATD------INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS--L------ 144 (261)
Q Consensus 79 ~~~~~dg~i~i~~~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~--~------ 144 (261)
++++.|..+++||...-... .+........ .....|++++|+.++.-++++..|-.|+++.-.. +
T Consensus 298 aVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~-d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~ 376 (559)
T KOG1334|consen 298 AVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE-DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPS 376 (559)
T ss_pred ccCChhhhhhhhcccchhhccccchhhhcCCccccc-cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCC
Confidence 99999999999998765432 1111111111 2345789999999888777777888899985322 1
Q ss_pred ----eEEee-ccccCC--ceeEEEE-cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEE
Q 024868 145 ----RIILD-EPKAHK--SVLDMDF-SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC 216 (261)
Q Consensus 145 ----~~~~~-~~~~~~--~v~~~~~-s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~ 216 (261)
..... +++|.. .|..+-| -|...++++|++-|.|.||+-.+++.++.+.+... -|+|+.=+|--..
T Consensus 377 s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~-VVNCLEpHP~~Pv----- 450 (559)
T KOG1334|consen 377 SPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-VVNCLEPHPHLPV----- 450 (559)
T ss_pred cchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc-eEeccCCCCCCch-----
Confidence 11122 344443 4788876 67889999999999999999999999988887655 6889888886665
Q ss_pred EEeeCCCcEEEEEECCCCe
Q 024868 217 TVQRGDKALLAVYDISTWN 235 (261)
Q Consensus 217 ~~~~~~d~~i~~~d~~~~~ 235 (261)
+++++-|..|+||-..+.+
T Consensus 451 LAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 451 LASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred hhccCCccceeeecCCccc
Confidence 7999999999999975433
No 266
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.36 E-value=5.2e-09 Score=80.99 Aligned_cols=192 Identities=11% Similarity=0.067 Sum_probs=122.3
Q ss_pred EEEEEcCCCCceecCCeEEeeecCC-----CCCceEEEECCCCCeEEEEec--CCcEEEEEEeCCccccceee-------
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDES-----EGDPMTIAVNPSGDDFVCSTT--NGGCKLFEVYGGATDINLLA------- 103 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~--dg~i~i~~~~~~~~~~~~~~------- 103 (261)
.|..||..+.+. .....+... ......++++|||++|++... +..+.+.|+.+++.......
T Consensus 78 ~V~v~D~~t~~~----~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy 153 (352)
T TIGR02658 78 YVEVIDPQTHLP----IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIF 153 (352)
T ss_pred EEEEEECccCcE----EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEE
Confidence 788889888775 112222111 123457899999999987763 57899999987754111000
Q ss_pred -----------------------------eeCCCCCC-CCCe-EEEEEee-CCcEEEEeccCCeEEEEEccCce-----E
Q 024868 104 -----------------------------KKMPPLQD-AGPQ-KCLSFSV-DGSRFAAGGVDGHLRIMHWPSLR-----I 146 (261)
Q Consensus 104 -----------------------------~~~~~~~~-~~~v-~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~-----~ 146 (261)
.....+.. ..++ ....|++ +|+++.+... |+|++.|+...+ .
T Consensus 154 ~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~ 232 (352)
T TIGR02658 154 PTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPA 232 (352)
T ss_pred EecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecce
Confidence 00000000 0000 0013455 7877777755 999999964322 2
Q ss_pred Eeeccc-------cCCceeEEEEcCCCCEEEEec----------CCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCC
Q 024868 147 ILDEPK-------AHKSVLDMDFSLDSEFLATTS----------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209 (261)
Q Consensus 147 ~~~~~~-------~~~~v~~~~~s~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~ 209 (261)
...... ..+...-++++|+++.++... ..+.|.++|..+++.+..+.... .+..++++||+
T Consensus 233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~--~~~~iavS~Dg 310 (352)
T TIGR02658 233 IEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH--EIDSINVSQDA 310 (352)
T ss_pred eeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC--ceeeEEECCCC
Confidence 111110 112344599999999888742 12579999999999999887543 58999999999
Q ss_pred C-cceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868 210 T-KPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (261)
Q Consensus 210 ~-~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~ 240 (261)
+ ++ ..+...++.|.++|..+++.++.+
T Consensus 311 kp~l----yvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 311 KPLL----YALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CeEE----EEeCCCCCcEEEEECcCCeEEeee
Confidence 9 52 245556788999999999998876
No 267
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.33 E-value=4.2e-09 Score=93.35 Aligned_cols=167 Identities=10% Similarity=0.065 Sum_probs=109.8
Q ss_pred CceEEEECC-CCCeEEEEecCCcEEEEEEeCCccccceeeee-------CCCCCCCCCeEEEEEeeCCcEEEEe-ccCCe
Q 024868 65 DPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKK-------MPPLQDAGPQKCLSFSVDGSRFAAG-GVDGH 135 (261)
Q Consensus 65 ~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~ 135 (261)
....++++| ++..+++...++.|++||..++......-... ............++++|+++.|+++ ..++.
T Consensus 684 ~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 684 SPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 356899999 45555666677889999987654311000000 0000112345789999999855544 56789
Q ss_pred EEEEEccCceEEeecc------------c-c--------CCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee
Q 024868 136 LRIMHWPSLRIILDEP------------K-A--------HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR 194 (261)
Q Consensus 136 i~~~d~~~~~~~~~~~------------~-~--------~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 194 (261)
|++||+.++....... . . ......++++++|+++++-+.++.|++||..++........
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~ 843 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT 843 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc
Confidence 9999988765321100 0 0 01246899999999888888899999999987765533211
Q ss_pred cC------------CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868 195 NS------------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (261)
Q Consensus 195 ~~------------~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~ 236 (261)
.. -.....++++++|+. +++...++.|++||+++++.
T Consensus 844 G~~G~~dG~~~~a~l~~P~GIavd~dG~l-----yVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 844 GKAGFKDGKALKAQLSEPAGLALGENGRL-----FVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCcCCCCCcccccccCCceEEEEeCCCCE-----EEEECCCCEEEEEECCCCcc
Confidence 10 013678999999985 46778889999999988764
No 268
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.31 E-value=9.1e-09 Score=91.32 Aligned_cols=235 Identities=12% Similarity=0.005 Sum_probs=137.5
Q ss_pred EEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCe-EEee------ecCCCCCceEEEECCCCCeEEEE
Q 024868 9 CGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPL-VTYV------FDESEGDPMTIAVNPSGDDFVCS 81 (261)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~------~~~~~~~v~~~~~~~~~~~l~~~ 81 (261)
.+++.+. +..+.++-...+ +|..+|..+........ ...- -...-.....+++.++++.|+++
T Consensus 572 gvavd~~--~g~lyVaDs~n~--------rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVa 641 (1057)
T PLN02919 572 KLAIDLL--NNRLFISDSNHN--------RIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVA 641 (1057)
T ss_pred eEEEECC--CCeEEEEECCCC--------eEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEE
Confidence 3555543 244556555555 78888876543210000 0000 00112346889999988877665
Q ss_pred ec-CCcEEEEEEeCCccccceeeeeCC--CC--------CCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEee
Q 024868 82 TT-NGGCKLFEVYGGATDINLLAKKMP--PL--------QDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILD 149 (261)
Q Consensus 82 ~~-dg~i~i~~~~~~~~~~~~~~~~~~--~~--------~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~ 149 (261)
.. .+.|+++|..++... .+...-.. .. ........++++| ++..+++...++.|++||..++.....
T Consensus 642 Dt~n~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~ 720 (1057)
T PLN02919 642 DTENHALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVF 720 (1057)
T ss_pred eCCCceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 54 467888888665421 11000000 00 0012346899999 566666666788999999876643211
Q ss_pred c--------cc------cCCceeEEEEcCCCCEE-EEecCCCcEEEEEccCCcEEEEEeec------------C------
Q 024868 150 E--------PK------AHKSVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAWTFLTRN------------S------ 196 (261)
Q Consensus 150 ~--------~~------~~~~v~~~~~s~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~------------~------ 196 (261)
. .. .......++++|+++.| ++-+.++.|++||+.++.......+. .
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 0 00 01235679999999854 45566789999999876532111000 0
Q ss_pred --CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc--------------CcCeeEEEEeeCCCEEe
Q 024868 197 --DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL--------------RKPASVLSISLDGKYLA 260 (261)
Q Consensus 197 --~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~--------------~~~v~~~~~s~dg~~la 260 (261)
-.....++++++|.. .++...++.|++||..++.... +.+. -.....++++++|+.++
T Consensus 801 ~~l~~P~Gvavd~dG~L-----YVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyV 874 (1057)
T PLN02919 801 VLLQHPLGVLCAKDGQI-----YVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFV 874 (1057)
T ss_pred hhccCCceeeEeCCCcE-----EEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccccCCceEEEEeCCCCEEE
Confidence 012468899999985 4667788999999998876542 2211 12467899999998654
No 269
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=3.1e-10 Score=89.34 Aligned_cols=184 Identities=14% Similarity=0.118 Sum_probs=131.7
Q ss_pred ceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-----------CC
Q 024868 66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----------DG 134 (261)
Q Consensus 66 v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------d~ 134 (261)
-+-+.|||-|.+|++-...| |.+|--.+... ...+. +..|.-+.|||..++|++-+. ..
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r--------~~RF~-Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDR--------IQRFY-HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHH--------HHhcc-CCCceeeecCCccceEEEecCCccccCcccCCCc
Confidence 45789999999999998888 99997766543 22222 346788999999999998541 24
Q ss_pred eEEEEEccCceEEeeccccCC--c-eeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868 135 HLRIMHWPSLRIILDEPKAHK--S-VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (261)
Q Consensus 135 ~i~~~d~~~~~~~~~~~~~~~--~-v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 211 (261)
.+.|||+++|.....+....+ . -.-..||.|++++|--.. .+|.||+..+..++..-..... .|....|+|.+..
T Consensus 283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~-gIr~FswsP~~~l 360 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKIS-GIRDFSWSPTSNL 360 (698)
T ss_pred eEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCc-cccCcccCCCcce
Confidence 699999999987666554222 2 234789999999998765 6699999776444332222223 4899999999886
Q ss_pred ceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 212 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+...+--+...-..+.+..+.+++.+++...+.-.-..+.|-.+|.||++
T Consensus 361 lAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcv 410 (698)
T KOG2314|consen 361 LAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCV 410 (698)
T ss_pred EEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEE
Confidence 32222222333457888888888888777766666677899999999974
No 270
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=3.2e-11 Score=95.05 Aligned_cols=181 Identities=13% Similarity=0.133 Sum_probs=132.2
Q ss_pred CCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec
Q 024868 52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131 (261)
Q Consensus 52 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 131 (261)
..+..+.+.+|+..|..++--.+.+.+++++.|.++++|.++...........+.....|+.+|.++.|-.+-++++++
T Consensus 724 ~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc- 802 (1034)
T KOG4190|consen 724 DHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC- 802 (1034)
T ss_pred ceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec-
Confidence 3455567889999999888777778899999999999999987654333333344555678899999999998888775
Q ss_pred cCCeEEEEEccCceEEeeccc--cCCceeEEEEcC--CCCEEEEe-cCCCcEEEEEccCCcEEEEEeec----CCCceEE
Q 024868 132 VDGHLRIMHWPSLRIILDEPK--AHKSVLDMDFSL--DSEFLATT-STDGSARIWKTEDGVAWTFLTRN----SDEKIEL 202 (261)
Q Consensus 132 ~d~~i~~~d~~~~~~~~~~~~--~~~~v~~~~~s~--~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~----~~~~v~~ 202 (261)
||-|++||.--+..+..+.. .++.+..+..-| +...+..+ +...+|+++|.+.++....++.. .++-+++
T Consensus 803 -D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ 881 (1034)
T KOG4190|consen 803 -DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA 881 (1034)
T ss_pred -cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence 78899999766655433322 223333343334 34445444 67889999999988766665432 2235889
Q ss_pred EEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868 203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (261)
Q Consensus 203 ~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~ 239 (261)
++..|.|++ ++.+-.+|+|.+.|.++|+.+..
T Consensus 882 iaVa~~GN~-----lAa~LSnGci~~LDaR~G~vINs 913 (1034)
T KOG4190|consen 882 IAVADKGNK-----LAAALSNGCIAILDARNGKVINS 913 (1034)
T ss_pred EEeccCcch-----hhHHhcCCcEEEEecCCCceecc
Confidence 999999999 57788889999999999987653
No 271
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.28 E-value=1.2e-10 Score=86.50 Aligned_cols=168 Identities=13% Similarity=0.216 Sum_probs=116.5
Q ss_pred cCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCC-CCCCeEEEEEee-CCcEEEEeccCCeEE
Q 024868 60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSV-DGSRFAAGGVDGHLR 137 (261)
Q Consensus 60 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~~d~~i~ 137 (261)
..|+--|.++.++.|+..++++ .|=.|.+|+++-......+..-....+. -..-|++..|+| ....++..+..|+|+
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred ccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 3577779999999999988886 5777999999765432322211100000 024578889999 457788888999999
Q ss_pred EEEccCceEE------eecc----------ccCCceeEEEEcCCCCEEEEecCCCcEEEEEcc-CCcEEEEEeecCCC--
Q 024868 138 IMHWPSLRII------LDEP----------KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-DGVAWTFLTRNSDE-- 198 (261)
Q Consensus 138 ~~d~~~~~~~------~~~~----------~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~-- 198 (261)
+.|++..... ...+ +--..|..+.|+++|+++++-.. -+|++||+. ..+++.+++.|...
T Consensus 240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~ 318 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRS 318 (433)
T ss_pred EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHH
Confidence 9999843211 1111 01135788999999999998643 789999994 56777777654311
Q ss_pred ------------ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868 199 ------------KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (261)
Q Consensus 199 ------------~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~ 234 (261)
.-..++|+.++.+ +++|+..+.+++|++..|
T Consensus 319 kLc~lYEnD~IfdKFec~~sg~~~~-----v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 319 KLCSLYENDAIFDKFECSWSGNDSY-----VMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHHHHhhccchhheeEEEEcCCcce-----EecccccceEEEecCCCC
Confidence 1235789999888 799999999999996544
No 272
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.27 E-value=1.5e-10 Score=87.46 Aligned_cols=156 Identities=17% Similarity=0.235 Sum_probs=104.2
Q ss_pred cceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeC---
Q 024868 18 NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYG--- 94 (261)
Q Consensus 18 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~--- 94 (261)
...++|++...... .++.|+.... ........... ...+++.|..+......+...|.++-+|+-.
T Consensus 73 ~~~llAv~~~~K~~------~~f~~~~~~~--~~kl~~~~~v~---~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 73 SGRLVAVATSSKQR------AVFDYRENPK--GAKLLDVSCVP---KRPTAISFIREDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred CceEEEEEeCCCce------EEEEEecCCC--cceeeeEeecc---cCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence 46788888766621 3555554433 11222222333 3344555555555555555555555555543
Q ss_pred CccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecc-ccCCceeEEEEcCCCCEEEEec
Q 024868 95 GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP-KAHKSVLDMDFSLDSEFLATTS 173 (261)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~ 173 (261)
+.. ...+.|-..+..++|+||+++|+++..|..|++-.....-.+..+. +|..-|..++.-+ ++.|++++
T Consensus 142 ~~~--------~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~s 212 (390)
T KOG3914|consen 142 GRC--------EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGS 212 (390)
T ss_pred cCc--------chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecC
Confidence 332 5566777899999999999999999999999998776554444444 4666799998875 55699999
Q ss_pred CCCcEEEEEccCCcEEEEEe
Q 024868 174 TDGSARIWKTEDGVAWTFLT 193 (261)
Q Consensus 174 ~d~~i~iwd~~~~~~~~~~~ 193 (261)
.|+++++||+.+|+++.++.
T Consensus 213 GD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 213 GDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CCCcEEEEecccCCcccccc
Confidence 99999999999999876553
No 273
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=7.8e-11 Score=91.09 Aligned_cols=192 Identities=13% Similarity=0.098 Sum_probs=140.0
Q ss_pred EeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccC
Q 024868 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVD 133 (261)
Q Consensus 56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d 133 (261)
...|..|.+.|..+.|+..|..|++++.|..+.+||.......... .-.|...|....|-| +.+.+++++.|
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f------~SGH~~NvfQaKFiP~s~d~ti~~~s~d 208 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF------ESGHCNNVFQAKFIPFSGDRTIVTSSRD 208 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc------ccccccchhhhhccCCCCCcCceecccc
Confidence 3467889999999999999999999999999999999887652222 123345566667777 44678999999
Q ss_pred CeEEEEEccCceE---EeeccccCCceeEEEEcCCC-CEEEEecCCCcEEEEEccCCcEEEEEeec---CC--CceEEEE
Q 024868 134 GHLRIMHWPSLRI---ILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRN---SD--EKIELCR 204 (261)
Q Consensus 134 ~~i~~~d~~~~~~---~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~--~~v~~~~ 204 (261)
|.+++=.+...+. ...+..|+++|..++.-|+. .-|.+++.|+.+.-+|++++.+...+... .. -....++
T Consensus 209 gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia 288 (559)
T KOG1334|consen 209 GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA 288 (559)
T ss_pred CceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence 9999876643322 23455677899999999954 56889999999999999987765544321 11 1356788
Q ss_pred EecCCCcceEEEEEeeCCCcEEEEEECCCCeE------Eeeee------ccCcCeeEEEEeeCCC
Q 024868 205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWNK------IGHKR------LLRKPASVLSISLDGK 257 (261)
Q Consensus 205 ~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~------~~~~~------~~~~~v~~~~~s~dg~ 257 (261)
..|.+.+. ++.++.|..+++||.+.-.. +..+. .....|++++++.++.
T Consensus 289 ~~P~nt~~----faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s 349 (559)
T KOG1334|consen 289 VDPRNTNE----FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS 349 (559)
T ss_pred cCCCCccc----cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc
Confidence 89988864 48889999999999875322 11111 2235689999997654
No 274
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.21 E-value=5.9e-11 Score=104.55 Aligned_cols=184 Identities=9% Similarity=0.099 Sum_probs=132.6
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccc
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD 98 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~ 98 (261)
..+.++|+++|.. ++|.|....... .....+. ..|+.+.|+.+|+.+..+..||.+.+|.......
T Consensus 2220 ~~~Yltgs~dgsv------~~~~w~~~~~v~------~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~- 2285 (2439)
T KOG1064|consen 2220 DPYYLTGSQDGSV------RMFEWGHGQQVV------CFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPY- 2285 (2439)
T ss_pred CceEEecCCCceE------EEEeccCCCeEE------EeeccCc-chhhhhhhcccCCceeeeccCCceeecccCCcce-
Confidence 4467788888844 777776544332 2233333 7899999999999999999999999999873321
Q ss_pred cceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec---cCCeEEEEEccCceE-EeeccccCCceeEEEEcCCCCEEEEecC
Q 024868 99 INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG---VDGHLRIMHWPSLRI-ILDEPKAHKSVLDMDFSLDSEFLATTST 174 (261)
Q Consensus 99 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 174 (261)
.....|.....++.|-. ..+++++ .++.+.+||..-... -.....|.+.++++++-|.-+.|++|+.
T Consensus 2286 -------~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2286 -------TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred -------eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCC
Confidence 22333455666777754 5666664 567899999653221 1122567778999999999999999999
Q ss_pred CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868 175 DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (261)
Q Consensus 175 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~ 241 (261)
+|.|++||++..+.++.++. +. ...+ +++++..|.++||++.....++++.
T Consensus 2357 ~G~v~l~D~rqrql~h~~~~----------~~-~~~~-----f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQA----------LD-TREY-----FVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred cCcEEEeehHHHHHHHHhhh----------hh-hhhe-----eeccCcccceEEEEccccchhhcCc
Confidence 99999999998888776653 33 2333 5888999999999998876665443
No 275
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.21 E-value=3.8e-10 Score=80.83 Aligned_cols=202 Identities=12% Similarity=0.128 Sum_probs=121.6
Q ss_pred eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCcccc
Q 024868 20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI 99 (261)
Q Consensus 20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~ 99 (261)
..++.+..++...+-+..+....++........++.. +..|+++-.+-+.+--++.++++..||.+.+++.+.-....
T Consensus 48 ~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~--~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~ 125 (319)
T KOG4714|consen 48 YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKV--LAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALM 125 (319)
T ss_pred heeecccchhheeeeccceEEEechhhcccCcCceee--eeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhh
Confidence 3555666666555555556666665544433334333 33455443344444456779999999999999987632111
Q ss_pred ceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-----cCCeEEEEEccCceEEeeccccCCceeEEEEcCC-CCEEEEec
Q 024868 100 NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-----VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD-SEFLATTS 173 (261)
Q Consensus 100 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~ 173 (261)
.. +.. .+ ..-.+.+.-..++.+.++. .-+..+.|+++..+...........|.+++-+|. .+.+++|+
T Consensus 126 ~~----i~~-~~-~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt 199 (319)
T KOG4714|consen 126 SR----IPS-IH-SGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGT 199 (319)
T ss_pred hh----ccc-cc-ccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEec
Confidence 10 000 01 1112222333455555442 2234667777655443222223345899999995 45667888
Q ss_pred CCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868 174 TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (261)
Q Consensus 174 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~ 233 (261)
.||.+-+||.++......+...+..+++.+-|+|..... ++++++||.+..||..+
T Consensus 200 ~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~----Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 200 DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH----LFTCSEDGSLWHWDAST 255 (319)
T ss_pred CCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh----eeEecCCCcEEEEcCCC
Confidence 999999999998754444433344579999999976543 68999999999999874
No 276
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.20 E-value=1.2e-08 Score=88.98 Aligned_cols=139 Identities=14% Similarity=0.185 Sum_probs=88.4
Q ss_pred CCCceEEEECCCCCeEEEEec---C---CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc---C
Q 024868 63 EGDPMTIAVNPSGDDFVCSTT---N---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---D 133 (261)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~---d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d 133 (261)
.+.-..++|..||+++|+.+- . ..++||+-+..-. .. .. .-.+--..++|.|.|++||+... .
T Consensus 209 dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~---st---SE--~v~gLe~~l~WrPsG~lIA~~q~~~~~ 280 (928)
T PF04762_consen 209 DDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQ---ST---SE--PVDGLEGALSWRPSGNLIASSQRLPDR 280 (928)
T ss_pred CCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEE---ec---cc--cCCCccCCccCCCCCCEEEEEEEcCCC
Confidence 335567999999999998764 2 4688887763211 00 11 11223356899999999998863 3
Q ss_pred CeEEEEEccCceEEeec--c--ccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcE--EEEEeecCCCceEEEEEec
Q 024868 134 GHLRIMHWPSLRIILDE--P--KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSK 207 (261)
Q Consensus 134 ~~i~~~d~~~~~~~~~~--~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~p 207 (261)
..|.+|. ++|-.-..+ . .....|..+.|++|+..||....|. |++|-..+..- .+.+.......+..+.|+|
T Consensus 281 ~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdp 358 (928)
T PF04762_consen 281 HDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDP 358 (928)
T ss_pred cEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECC
Confidence 4566666 344322221 1 2334799999999999999977655 99999877542 2233322232355588998
Q ss_pred CCCc
Q 024868 208 DGTK 211 (261)
Q Consensus 208 ~~~~ 211 (261)
....
T Consensus 359 e~p~ 362 (928)
T PF04762_consen 359 EKPL 362 (928)
T ss_pred CCCC
Confidence 7654
No 277
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.20 E-value=2e-09 Score=85.85 Aligned_cols=187 Identities=19% Similarity=0.179 Sum_probs=117.0
Q ss_pred eecCCCCCceEEEECCCCCeEEEEec---C-CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-c
Q 024868 58 VFDESEGDPMTIAVNPSGDDFVCSTT---N-GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-V 132 (261)
Q Consensus 58 ~~~~~~~~v~~~~~~~~~~~l~~~~~---d-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~ 132 (261)
.+......+..-+|+|+++.++.... . ..++++++..+..... ....+.-...+|+|||++|+... .
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i--------~~~~g~~~~P~fspDG~~l~f~~~r 258 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI--------LNFNGNNGAPAFSPDGSKLAFSSSR 258 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee--------eccCCccCCccCCCCCCEEEEEECC
Confidence 44444566788899999998775532 2 3588899988765221 12234445678999999887764 4
Q ss_pred CC--eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC-CC--cEEEEEccCCcEEEEEeecCCCceEEEEEec
Q 024868 133 DG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSK 207 (261)
Q Consensus 133 d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p 207 (261)
|| .|+++|+..+.. .++....+.-..-.|+|||++++..++ .| .|.+.|.+.+.. ..+...... -....|+|
T Consensus 259 dg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~-~~~p~~Sp 335 (425)
T COG0823 259 DGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGG-NSNPVWSP 335 (425)
T ss_pred CCCccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCC-CcCccCCC
Confidence 55 477778776663 334444444458889999999887664 34 466667665555 344333332 23778999
Q ss_pred CCCcceEEEEEeeCCCc--EEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 208 DGTKPFLFCTVQRGDKA--LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 208 ~~~~~~~~~~~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
||+++. +....+| .|.++|+.++..+. ............|.|+|+.+.
T Consensus 336 dG~~i~----~~~~~~g~~~i~~~~~~~~~~~~-~lt~~~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 336 DGDKIV----FESSSGGQWDIDKNDLASGGKIR-ILTSTYLNESPSWAPNGRMIM 385 (425)
T ss_pred CCCEEE----EEeccCCceeeEEeccCCCCcEE-EccccccCCCCCcCCCCceEE
Confidence 999842 2222234 37777777666432 222333445677788887664
No 278
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.20 E-value=2.4e-08 Score=87.26 Aligned_cols=227 Identities=11% Similarity=0.142 Sum_probs=135.9
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEE----cCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEE
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSF----DPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV 79 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 79 (261)
...|.++.+.++ ...++++-.+| .|..+ ++....+ .....-...|.+++||||+..|+
T Consensus 75 ~~~ivs~~yl~d---~~~l~~~~~~G--------di~~~~~~~~~~~~~~-------E~VG~vd~GI~a~~WSPD~Ella 136 (928)
T PF04762_consen 75 NDKIVSFQYLAD---SESLCIALASG--------DIILVREDPDPDEDEI-------EIVGSVDSGILAASWSPDEELLA 136 (928)
T ss_pred CCcEEEEEeccC---CCcEEEEECCc--------eEEEEEccCCCCCcee-------EEEEEEcCcEEEEEECCCcCEEE
Confidence 467778888775 33445555555 66666 4444432 22333457899999999999999
Q ss_pred EEecCCcEEEEEEeCC----c-------------------cccce------------eeeeC-----CCCCCCCCeEEEE
Q 024868 80 CSTTNGGCKLFEVYGG----A-------------------TDINL------------LAKKM-----PPLQDAGPQKCLS 119 (261)
Q Consensus 80 ~~~~dg~i~i~~~~~~----~-------------------~~~~~------------~~~~~-----~~~~~~~~v~~~~ 119 (261)
..+.++++.+.+..=. . ...++ ..... ..+.....-..++
T Consensus 137 ~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~IS 216 (928)
T PF04762_consen 137 LVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRIS 216 (928)
T ss_pred EEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEE
Confidence 9988888877643200 0 00000 00000 0111223446789
Q ss_pred EeeCCcEEEEecc------CCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC---CCcEEEEEccCCcEEE
Q 024868 120 FSVDGSRFAAGGV------DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGVAWT 190 (261)
Q Consensus 120 ~s~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~iwd~~~~~~~~ 190 (261)
|-.||+++|+.+. -+.+++|+ +.|.....-..-.+--..++|-|.|++||+.-. ...|.+|. ++|..-.
T Consensus 217 WRGDG~yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhg 294 (928)
T PF04762_consen 217 WRGDGEYFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHG 294 (928)
T ss_pred ECCCCcEEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEee
Confidence 9999999998763 25799998 446543322222233467999999999998754 23466665 4454444
Q ss_pred EEee---cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE--Eeeeec-cCcCeeEEEEeeCC
Q 024868 191 FLTR---NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKRL-LRKPASVLSISLDG 256 (261)
Q Consensus 191 ~~~~---~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~--~~~~~~-~~~~v~~~~~s~dg 256 (261)
.+.. .....|..+.|++|+..+ +..-.| .|.+|-..+..- .+.+.. ....+..+.|+|..
T Consensus 295 eF~l~~~~~~~~v~~l~Wn~ds~iL-----Av~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~ 360 (928)
T PF04762_consen 295 EFTLRFDPEEEKVIELAWNSDSEIL-----AVWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEK 360 (928)
T ss_pred eEecCCCCCCceeeEEEECCCCCEE-----EEEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCC
Confidence 4432 234469999999999973 333344 399999887552 112221 12334458888854
No 279
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=2e-10 Score=85.34 Aligned_cols=161 Identities=9% Similarity=0.074 Sum_probs=116.8
Q ss_pred EEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCc----eEEeeccccCC
Q 024868 80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL----RIILDEPKAHK 155 (261)
Q Consensus 80 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~----~~~~~~~~~~~ 155 (261)
+.+.+..+-+-+++++. ...+...+.|.++.|...+.++..|...|.|..+|++.+ .......-|.+
T Consensus 229 s~G~sqqv~L~nvetg~---------~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~S 299 (425)
T KOG2695|consen 229 SVGLSQQVLLTNVETGH---------QQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDS 299 (425)
T ss_pred cccccceeEEEEeeccc---------ccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCc
Confidence 34455568888888776 344455678999999988899999999999999999865 22223344667
Q ss_pred ceeEEEEcC-CCCEEEEecCCCcEEEEEccCCcE---EEEEeecCCCce-EEEEEecCCCcceEEEEEeeCCCcEEEEEE
Q 024868 156 SVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVA---WTFLTRNSDEKI-ELCRFSKDGTKPFLFCTVQRGDKALLAVYD 230 (261)
Q Consensus 156 ~v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v-~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d 230 (261)
.|+++..-. ++++|++.+.+|.|++||++.-++ +.++.+|.+... .-+-..+.... ++++++|...++|.
T Consensus 300 svtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~-----I~s~GdDcytRiWs 374 (425)
T KOG2695|consen 300 SVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGS-----IFSVGDDCYTRIWS 374 (425)
T ss_pred chhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccce-----EEEccCeeEEEEEe
Confidence 888887766 788999999999999999997666 777877754311 11223444554 57799999999999
Q ss_pred CCCCeEEeeeeccC----cCeeEEEEee
Q 024868 231 ISTWNKIGHKRLLR----KPASVLSISL 254 (261)
Q Consensus 231 ~~~~~~~~~~~~~~----~~v~~~~~s~ 254 (261)
++.+..+.++.... ..+.+++|+.
T Consensus 375 l~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 375 LDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred cccCceeeccCCCCccccccccceehhc
Confidence 99999887665432 2445566543
No 280
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=7.7e-10 Score=87.17 Aligned_cols=136 Identities=20% Similarity=0.216 Sum_probs=102.4
Q ss_pred EEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC-----------CCcEEEEEcc
Q 024868 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-----------DGSARIWKTE 184 (261)
Q Consensus 116 ~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------d~~i~iwd~~ 184 (261)
+-+.|||.|.+|++-...| |.+|--.+-..++++ .|..|.-+.|||+.+||++=+. ...+.|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF--~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF--YHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhc--cCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 5689999999999986666 889976555554443 2456899999999999998543 1479999999
Q ss_pred CCcEEEEEeecC--CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 185 DGVAWTFLTRNS--DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 185 ~~~~~~~~~~~~--~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
+|...+.+.... ...-.-+.||.|+++ ++.-. ...|.||+..+..++.........|....|+|.++.||
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy-----~Arm~-~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llA 362 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKY-----FARMT-GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLA 362 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCce-----eEEec-cceEEEEecCceeeecccccCCccccCcccCCCcceEE
Confidence 999988886522 111234689999998 23222 25799999988777655555667899999999999887
No 281
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=2.1e-08 Score=82.38 Aligned_cols=218 Identities=13% Similarity=0.107 Sum_probs=148.8
Q ss_pred eEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCC------------
Q 024868 8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG------------ 75 (261)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------ 75 (261)
..+.|+|. .++|.|+.. .|...|....+. ...+..|...|+.+.|.|..
T Consensus 19 ~A~Dw~~~----GLiAygshs---------lV~VVDs~s~q~------iqsie~h~s~V~~VrWap~~~p~~llS~~~~~ 79 (1062)
T KOG1912|consen 19 NAADWSPS----GLIAYGSHS---------LVSVVDSRSLQL------IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQ 79 (1062)
T ss_pred cccccCcc----ceEEEecCc---------eEEEEehhhhhh------hhccccCccceeEEEeccCCCchhccCccccc
Confidence 34668774 488888653 467778776655 55677889999999998732
Q ss_pred CeEEEEecCCcEEEEEEeCCccccceeeeeCCCCC-CCCCeEEEEEee---CC-cEEEEeccCCeEEEEEccCceEEeec
Q 024868 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSV---DG-SRFAAGGVDGHLRIMHWPSLRIILDE 150 (261)
Q Consensus 76 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~---~~-~~l~~~~~d~~i~~~d~~~~~~~~~~ 150 (261)
-.||++...|.|.+||...... +..+. +..++..++|-| +. ..+++-....++.+|+..+|+..++.
T Consensus 80 lliAsaD~~GrIil~d~~~~s~--------~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~ 151 (1062)
T KOG1912|consen 80 LLIASADISGRIILVDFVLASV--------INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY 151 (1062)
T ss_pred eeEEeccccCcEEEEEehhhhh--------hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc
Confidence 1466777779999999987764 33333 346778888876 34 35666667789999999999998887
Q ss_pred cccCCceeEEEEcC-CCCEEEEecCCCcEEEEEccC-------CcEEEEEeecCC----------------Cc-------
Q 024868 151 PKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTED-------GVAWTFLTRNSD----------------EK------- 199 (261)
Q Consensus 151 ~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~-------~~~~~~~~~~~~----------------~~------- 199 (261)
.-.+....++.+.| |.+.+...+..|.+.+-+.-. ++..+....|.+ .+
T Consensus 152 ~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fit 231 (1062)
T KOG1912|consen 152 DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFIT 231 (1062)
T ss_pred ccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHH
Confidence 77777888899999 777777777778777766531 222222111111 00
Q ss_pred -eEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCC
Q 024868 200 -IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK 257 (261)
Q Consensus 200 -v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~ 257 (261)
...++|+|.-+.+ ........+.++|++-...+.......+.+.-+.|-|+++
T Consensus 232 y~a~faf~p~~rn~-----lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~ 285 (1062)
T KOG1912|consen 232 YCAQFAFSPHWRNI-----LFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPR 285 (1062)
T ss_pred HHHhhhcChhhhce-----EEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCC
Confidence 1135678876663 2222356799999988777777776667667777777765
No 282
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.12 E-value=3.3e-09 Score=78.11 Aligned_cols=223 Identities=14% Similarity=0.173 Sum_probs=135.5
Q ss_pred CCCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCC------------CCceEE
Q 024868 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE------------GDPMTI 69 (261)
Q Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~ 69 (261)
+....|+++.|... +.++++|...| ++..|...... ..+...-..+++|. ..|..+
T Consensus 24 tead~ItaVefd~t---g~YlatGDkgG--------RVvlfer~~s~-~ceykf~teFQshe~EFDYLkSleieEKin~I 91 (460)
T COG5170 24 TEADKITAVEFDET---GLYLATGDKGG--------RVVLFEREKSY-GCEYKFFTEFQSHELEFDYLKSLEIEEKINAI 91 (460)
T ss_pred cccceeeEEEeccc---cceEeecCCCc--------eEEEeeccccc-ccchhhhhhhcccccchhhhhhccHHHHhhhe
Confidence 34567888888763 67999998888 77777654433 11111111234443 247888
Q ss_pred EECCCCC--eEEEEecCCcEEEEEEeCCcccc----------------------ceee--------------eeCCCCCC
Q 024868 70 AVNPSGD--DFVCSTTNGGCKLFEVYGGATDI----------------------NLLA--------------KKMPPLQD 111 (261)
Q Consensus 70 ~~~~~~~--~l~~~~~dg~i~i~~~~~~~~~~----------------------~~~~--------------~~~~~~~~ 111 (261)
.|..++. .++..+.|.+|++|.+....... .+.. .....-.|
T Consensus 92 ~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH 171 (460)
T COG5170 92 EWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAH 171 (460)
T ss_pred eeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccc
Confidence 8876543 35555689999999997652100 0000 00011123
Q ss_pred CCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE---EeeccccC-----CceeEEEEcCC-CCEEEEecCCCcEEEEE
Q 024868 112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI---ILDEPKAH-----KSVLDMDFSLD-SEFLATTSTDGSARIWK 182 (261)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~-----~~v~~~~~s~~-~~~l~~~~~d~~i~iwd 182 (261)
.--+.++.|+.|...++++ .|=.|.+|.+.-... +..+..+. .-|++..|+|. ...+...+..|.|++-|
T Consensus 172 ~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~D 250 (460)
T COG5170 172 PYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLND 250 (460)
T ss_pred eeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehh
Confidence 3456788999988888887 677899998764322 22333333 24788999994 45566667789999999
Q ss_pred ccCCcE------EEEEee---------cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe-EEeeeecc
Q 024868 183 TEDGVA------WTFLTR---------NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLL 243 (261)
Q Consensus 183 ~~~~~~------~~~~~~---------~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~ 243 (261)
+++... +..... ..-..|..+.|+++|++ +++.. --++++||.+..+ ++.++..|
T Consensus 251 lRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngry-----IlsRd-yltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 251 LRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRY-----ILSRD-YLTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred hhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcE-----EEEec-cceEEEEecccccCCceeechH
Confidence 984321 111110 01124788999999998 34444 4589999998644 45555433
No 283
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.10 E-value=1.4e-07 Score=69.01 Aligned_cols=172 Identities=12% Similarity=0.109 Sum_probs=108.7
Q ss_pred CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC------CcEEEEeccCCeEE
Q 024868 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD------GSRFAAGGVDGHLR 137 (261)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------~~~l~~~~~d~~i~ 137 (261)
..=..++||||+..||.+...|+|++||+.+.... .+.........-...|..+.|-+- ...|++-..+|.++
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred chheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 34678999999999999999999999999865431 111111111112356777777542 22455666788877
Q ss_pred EEEccCc--e---E--Eeecccc-CCceeEEEEcCCCCEEEEecCC-C----------cEEEEEccCCcEE---------
Q 024868 138 IMHWPSL--R---I--ILDEPKA-HKSVLDMDFSLDSEFLATTSTD-G----------SARIWKTEDGVAW--------- 189 (261)
Q Consensus 138 ~~d~~~~--~---~--~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-~----------~i~iwd~~~~~~~--------- 189 (261)
-|-+..+ + . ...+..+ ...|.++.++|..++|+.|+.. . -+.-|.+-++.+-
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~ 202 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSED 202 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCc
Confidence 7765322 1 1 1222223 2479999999998888776541 1 2556655332110
Q ss_pred ------------E-----EE--eecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868 190 ------------T-----FL--TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (261)
Q Consensus 190 ------------~-----~~--~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~ 241 (261)
+ .+ .......|..|..||||+. +++...+|.|.+|++.+-+......
T Consensus 203 ~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~-----La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 203 DITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSL-----LACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred cccccccccceeeccceeeeeccccCCCceEEEEECCCCCE-----EEEEEcCCeEEEEecCcchhhcccc
Confidence 0 00 1112335889999999998 6888899999999998876654443
No 284
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.08 E-value=7.9e-08 Score=75.32 Aligned_cols=152 Identities=11% Similarity=0.135 Sum_probs=102.7
Q ss_pred eEEEECCCCCeEEEEec-----------CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec--cC
Q 024868 67 MTIAVNPSGDDFVCSTT-----------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--VD 133 (261)
Q Consensus 67 ~~~~~~~~~~~l~~~~~-----------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d 133 (261)
..+.|++.|++|.+-.. ..+++++++....... ...-.++|...+|+|+++.+++.+ .+
T Consensus 226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V--------~~~~~~pVhdf~W~p~S~~F~vi~g~~p 297 (561)
T COG5354 226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPV--------EKDLKDPVHDFTWEPLSSRFAVISGYMP 297 (561)
T ss_pred cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccce--------eccccccceeeeecccCCceeEEecccc
Confidence 36889999987764211 2468888887554311 113368999999999988776654 67
Q ss_pred CeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCC---CcEEEEEccCCcEEE-EEeecCCCceEEEEEecCC
Q 024868 134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD---GSARIWKTEDGVAWT-FLTRNSDEKIELCRFSKDG 209 (261)
Q Consensus 134 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~p~~ 209 (261)
-.+.++|++.. ..... ....=..+.|+|.+++++.++-| |.+-+||......+. .+.+. ..+-+.|+||+
T Consensus 298 a~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~---n~s~~~wspd~ 371 (561)
T COG5354 298 ASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL---NTSYCDWSPDG 371 (561)
T ss_pred cceeecccccc-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC---CceEeeccCCc
Confidence 78999998755 33322 33344567899999999987765 689999987654443 44322 25667899999
Q ss_pred CcceEEEEEee---CCCcEEEEEECCCC
Q 024868 210 TKPFLFCTVQR---GDKALLAVYDISTW 234 (261)
Q Consensus 210 ~~~~~~~~~~~---~~d~~i~~~d~~~~ 234 (261)
+++.+ ..++ ..|..+.|||+...
T Consensus 372 qF~~~--~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 372 QFYDT--DTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred eEEEe--cCCCcccccCcceEEEEecCc
Confidence 97321 2222 24788999998643
No 285
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.07 E-value=7.6e-08 Score=76.93 Aligned_cols=159 Identities=11% Similarity=0.011 Sum_probs=95.7
Q ss_pred CeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccCCeEEEEEccCceEEeecccc
Q 024868 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153 (261)
Q Consensus 76 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 153 (261)
..++.+..++.+..+|..+++.....................+.-+| .+..+++++.+|.++.+|..+++.+.....
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~- 269 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA- 269 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-
Confidence 35677777888999998877643221100000000000000010111 245677777899999999999987765542
Q ss_pred CCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (261)
Q Consensus 154 ~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~ 233 (261)
.....+. .++..++.++.+|.++.+|..+|+.+............+... .+.. ++.++.+|.++++|..+
T Consensus 270 -~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~-----l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 270 -SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGY-----LVVGDFEGYLHWLSRED 339 (377)
T ss_pred -CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCE-----EEEEeCCCEEEEEECCC
Confidence 1111222 246678888889999999999998876553211211222222 3444 46778899999999999
Q ss_pred CeEEeeeeccCc
Q 024868 234 WNKIGHKRLLRK 245 (261)
Q Consensus 234 ~~~~~~~~~~~~ 245 (261)
++.+.....+..
T Consensus 340 G~~~~~~~~~~~ 351 (377)
T TIGR03300 340 GSFVARLKTDGS 351 (377)
T ss_pred CCEEEEEEcCCC
Confidence 998877665543
No 286
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.06 E-value=2.9e-08 Score=79.40 Aligned_cols=182 Identities=16% Similarity=0.195 Sum_probs=106.3
Q ss_pred ceeeEEEEEeeCCcceEEEEecCC-CCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSS-RASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST- 82 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 82 (261)
.++..-+|+|+.....++..-... . +++.++.+++.. ...+. ..+.-...+|+|||++|+...
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~--------~i~~~~l~~g~~------~~i~~-~~g~~~~P~fspDG~~l~f~~~ 257 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCP--------RIYYLDLNTGKR------PVILN-FNGNNGAPAFSPDGSKLAFSSS 257 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCc--------eEEEEeccCCcc------ceeec-cCCccCCccCCCCCCEEEEEEC
Confidence 445555677765433333332222 2 677777766553 11111 234455688999999887554
Q ss_pred cCCc--EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-CC--eEEEEEccCceEEeeccccCCce
Q 024868 83 TNGG--CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DG--HLRIMHWPSLRIILDEPKAHKSV 157 (261)
Q Consensus 83 ~dg~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~v 157 (261)
.||. |+++|+.++.. .+ .....+.-..-.|+|||++|+..+. .| .|.+++.+.....+........
T Consensus 258 rdg~~~iy~~dl~~~~~-~~-------Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~- 328 (425)
T COG0823 258 RDGSPDIYLMDLDGKNL-PR-------LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN- 328 (425)
T ss_pred CCCCccEEEEcCCCCcc-ee-------cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC-
Confidence 4554 55666666552 11 1111222346789999999888753 33 4777777666553333322222
Q ss_pred eEEEEcCCCCEEEEecCC-Cc--EEEEEccCCcEEEEEeecCCCceEEEEEecCCCcc
Q 024868 158 LDMDFSLDSEFLATTSTD-GS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP 212 (261)
Q Consensus 158 ~~~~~s~~~~~l~~~~~d-~~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 212 (261)
....|+|||++++..+.. |. |.+.|+.++...+.+.... ......|.|+|+.+
T Consensus 329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~--~~e~ps~~~ng~~i 384 (425)
T COG0823 329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTY--LNESPSWAPNGRMI 384 (425)
T ss_pred cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccc--cCCCCCcCCCCceE
Confidence 378899999999877643 44 6667776665444444222 24567789999973
No 287
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=9.9e-09 Score=84.39 Aligned_cols=179 Identities=12% Similarity=0.219 Sum_probs=123.6
Q ss_pred eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCc
Q 024868 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (261)
Q Consensus 7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 86 (261)
++|++++. ..++.|..+| .++.++.....- ....|+.. ..+|.++++|+.||+
T Consensus 42 is~~av~~-----~~~~~GtH~g--------~v~~~~~~~~~~--------~~~~~s~~------~~~Gey~asCS~DGk 94 (846)
T KOG2066|consen 42 ISCCAVHD-----KFFALGTHRG--------AVYLTTCQGNPK--------TNFDHSSS------ILEGEYVASCSDDGK 94 (846)
T ss_pred HHHHHhhc-----ceeeeccccc--------eEEEEecCCccc--------cccccccc------ccCCceEEEecCCCc
Confidence 34455543 3788888888 777776654320 11223222 568999999999999
Q ss_pred EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC-----CcEEEEeccCCeEEEEEcc---CceEEeeccccCCcee
Q 024868 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-----GSRFAAGGVDGHLRIMHWP---SLRIILDEPKAHKSVL 158 (261)
Q Consensus 87 i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~d~~i~~~d~~---~~~~~~~~~~~~~~v~ 158 (261)
+.|-.+.+.+. .....-+.++.+++++|+ .+.+++|+..| +.++.-+ .... .......++|.
T Consensus 95 v~I~sl~~~~~--------~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~-v~l~~~eG~I~ 164 (846)
T KOG2066|consen 95 VVIGSLFTDDE--------ITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS-VVLSEGEGPIH 164 (846)
T ss_pred EEEeeccCCcc--------ceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccc-eeeecCccceE
Confidence 99999988764 333444678999999998 56899998888 7776532 1122 13345567899
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCC-----ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868 159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE-----KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (261)
Q Consensus 159 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~ 232 (261)
++.|. |+++|-++++| |++||..+++.+..++..... -...+.|.++.+. +. |...+|++..++
T Consensus 165 ~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~L------VI-GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 165 SIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRL------VI-GWGDSVKICSIK 233 (846)
T ss_pred EEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeE------EE-ecCCeEEEEEEe
Confidence 99996 88999988766 899999999888777654432 1335788887774 22 333468888877
No 288
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.05 E-value=1.2e-06 Score=65.95 Aligned_cols=212 Identities=16% Similarity=0.122 Sum_probs=128.8
Q ss_pred cceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCC--ceEEEECCCCCeEEEEec-----CCcEEEE
Q 024868 18 NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD--PMTIAVNPSGDDFVCSTT-----NGGCKLF 90 (261)
Q Consensus 18 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~-----dg~i~i~ 90 (261)
....++++..-|. ....||..++.. ...+....+. .-.-.|++||++|++.-. .|.|-||
T Consensus 16 ~~~avafaRRPG~-------~~~v~D~~~g~~------~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 16 RPEAVAFARRPGT-------FALVFDCRTGQL------LQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred CCeEEEEEeCCCc-------EEEEEEcCCCce------eeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence 3556667655441 577888887764 2222222221 124679999999998754 3889999
Q ss_pred EEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc------------------CCeEEEEEccCceEEeecc-
Q 024868 91 EVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV------------------DGHLRIMHWPSLRIILDEP- 151 (261)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------------------d~~i~~~d~~~~~~~~~~~- 151 (261)
|....-. +. -....+.-....+.+.|||+.|+++.. +..+.+.|..+++.+.+..
T Consensus 83 d~~~~~~--ri----~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L 156 (305)
T PF07433_consen 83 DAARGYR--RI----GEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL 156 (305)
T ss_pred ECcCCcE--EE----eEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec
Confidence 9983221 10 111112223356889999988777631 1235566677777655422
Q ss_pred ---ccCCceeEEEEcCCCCEEEEecCCC-------cEEEEEccCCcEEEEEeec------CCCceEEEEEecCCCcceEE
Q 024868 152 ---KAHKSVLDMDFSLDSEFLATTSTDG-------SARIWKTEDGVAWTFLTRN------SDEKIELCRFSKDGTKPFLF 215 (261)
Q Consensus 152 ---~~~~~v~~~~~s~~~~~l~~~~~d~-------~i~iwd~~~~~~~~~~~~~------~~~~v~~~~~~p~~~~~~~~ 215 (261)
.+.-.++.+++.++|..++..-..+ -+.+++ .++.+..+... ....+-++++++++..+
T Consensus 157 p~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~i--- 231 (305)
T PF07433_consen 157 PPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLI--- 231 (305)
T ss_pred CccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEE---
Confidence 1334799999999987665543322 133443 33333333221 12358899999999873
Q ss_pred EEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCC
Q 024868 216 CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG 256 (261)
Q Consensus 216 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg 256 (261)
++++-..+.+.+||..+++.+..... ..++.++-.+++
T Consensus 232 -a~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~ 269 (305)
T PF07433_consen 232 -AVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG 269 (305)
T ss_pred -EEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc
Confidence 46777888999999999998754433 344556655555
No 289
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.05 E-value=2.2e-08 Score=72.33 Aligned_cols=180 Identities=11% Similarity=0.038 Sum_probs=113.4
Q ss_pred EEEECC-----CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEcc
Q 024868 68 TIAVNP-----SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (261)
Q Consensus 68 ~~~~~~-----~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 142 (261)
.+.|.| .-.+|+.|+..|.+.+|...+.+...++.........-...+... ...+..++.|.++++.++.
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~-----~~~~~i~sndht~k~~~~~ 146 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDL-----KFPLNIASNDHTGKTMVVS 146 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccc-----ccceeeccCCcceeEEEEe
Confidence 455555 334788998999999999987664222221111111001111111 1235566788888888875
Q ss_pred CceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccC-CcEE-EEEeecCCCceEEEEEecCCCcceEEEEEee
Q 024868 143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-GVAW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (261)
Q Consensus 143 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~-~~~~-~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~ 220 (261)
-+..........-.+.++..++|++++++.++...|..|.+.. ++.+ +.........-.+..|+..... .+.+
T Consensus 147 ~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~-----FAv~ 221 (344)
T KOG4532|consen 147 GDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQ-----FAVV 221 (344)
T ss_pred cCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcce-----EEEE
Confidence 4432211111112378899999999999999999999998874 3322 2222222223457788888777 5889
Q ss_pred CCCcEEEEEECCCCeEE-----eeeeccCcCeeEEEEeeCCC
Q 024868 221 GDKALLAVYDISTWNKI-----GHKRLLRKPASVLSISLDGK 257 (261)
Q Consensus 221 ~~d~~i~~~d~~~~~~~-----~~~~~~~~~v~~~~~s~dg~ 257 (261)
..||++.|||++..... .+...|.+.+..+.|++-|.
T Consensus 222 ~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 222 FQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred ecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence 99999999999865432 23345778899999998553
No 290
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.05 E-value=2.3e-08 Score=78.21 Aligned_cols=185 Identities=16% Similarity=0.171 Sum_probs=132.4
Q ss_pred CCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC--------
Q 024868 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-------- 133 (261)
Q Consensus 62 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-------- 133 (261)
..-++..+.|||.|.+|++....+ |.+|.-....... .+. +..|..+.|||.+++|.+-...
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~--------~~~-~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e 100 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLV--------RFR-HPDVKYLDFSPNEKYLVTWSREPIIEPEIE 100 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhhee--------eee-cCCceecccCcccceeeeeccCCccChhhc
Confidence 455788999999999999877666 9999887665311 111 3568889999999999986432
Q ss_pred -------CeEEEEEccCceEEeeccccCCc--ee-EEEEcCCCCEEEEecCCCcEEEEEccCCcE----EEEEeecCCCc
Q 024868 134 -------GHLRIMHWPSLRIILDEPKAHKS--VL-DMDFSLDSEFLATTSTDGSARIWKTEDGVA----WTFLTRNSDEK 199 (261)
Q Consensus 134 -------~~i~~~d~~~~~~~~~~~~~~~~--v~-~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~ 199 (261)
..+.+||+.++..+..+.....+ .+ -+.|+-+.+++|=. -...++|+++ ++.. .+.+. ...
T Consensus 101 ~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr---~~g 175 (561)
T COG5354 101 ISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLR---PVG 175 (561)
T ss_pred cCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhcc---ccc
Confidence 34999999999988777655554 44 68899888877655 3467999997 3332 22222 224
Q ss_pred eEEEEEecCCCcceEE--EEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 200 IELCRFSKDGTKPFLF--CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 200 v~~~~~~p~~~~~~~~--~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+....|+|.+..--+. +--..+.++++++|.+..+..+.+.......-..+.|.+.|++|.+
T Consensus 176 i~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~ 239 (561)
T COG5354 176 ILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLV 239 (561)
T ss_pred eeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEE
Confidence 8899999986652211 1123567889999999988877666666656678999999998863
No 291
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.03 E-value=1e-09 Score=97.08 Aligned_cols=165 Identities=15% Similarity=0.205 Sum_probs=124.8
Q ss_pred ecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEE
Q 024868 59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI 138 (261)
Q Consensus 59 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~ 138 (261)
++.+-..|.++.=+|...+.++|+.||.+++|....+....- .... +...|+.+.|+.+|..+..+..||.+.+
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~-----~rt~-g~s~vtr~~f~~qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVC-----FRTA-GNSRVTRSRFNHQGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEE-----eecc-CcchhhhhhhcccCCceeeeccCCceee
Confidence 334445677888888888999999999999999877664221 1112 2377889999999999999999999999
Q ss_pred EEccCceEEeeccccCCceeEEEEcCCCCEEEEec---CCCcEEEEEccCC---cEEEEEeecCCCceEEEEEecCCCcc
Q 024868 139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS---TDGSARIWKTEDG---VAWTFLTRNSDEKIELCRFSKDGTKP 212 (261)
Q Consensus 139 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~d~~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~p~~~~~ 212 (261)
|.+. .+.......|.....+.+|-. ..+++++ +++.+.+||..-. ..+. ..|.. .++++++-|..+.
T Consensus 2278 ~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~-gaT~l~~~P~~ql- 2350 (2439)
T KOG1064|consen 2278 WQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDG-GATVLAYAPKHQL- 2350 (2439)
T ss_pred cccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCC-CceEEEEcCcceE-
Confidence 9976 555556667777888888864 5667654 4688999997532 2333 44544 5999999999987
Q ss_pred eEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868 213 FLFCTVQRGDKALLAVYDISTWNKIGHK 240 (261)
Q Consensus 213 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~ 240 (261)
+++|+.+|.|++||++..+.++++
T Consensus 2351 ----lisggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2351 ----LISGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred ----EEecCCcCcEEEeehHHHHHHHHh
Confidence 799999999999999876655433
No 292
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.01 E-value=2.3e-10 Score=94.96 Aligned_cols=209 Identities=14% Similarity=0.159 Sum_probs=146.4
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
.--+|++|+-+ .+.+++|...| +|..|+..++.. ......|..+|+-+.-+.||..+++.+..
T Consensus 1102 ~~fTc~afs~~---~~hL~vG~~~G--------eik~~nv~sG~~------e~s~ncH~SavT~vePs~dgs~~Ltsss~ 1164 (1516)
T KOG1832|consen 1102 ALFTCIAFSGG---TNHLAVGSHAG--------EIKIFNVSSGSM------EESVNCHQSAVTLVEPSVDGSTQLTSSSS 1164 (1516)
T ss_pred cceeeEEeecC---CceEEeeeccc--------eEEEEEccCccc------cccccccccccccccccCCcceeeeeccc
Confidence 34689999884 67899999999 888888877765 55678899999999999999987766543
Q ss_pred C--cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC----Ccee
Q 024868 85 G--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH----KSVL 158 (261)
Q Consensus 85 g--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~----~~v~ 158 (261)
. -..+|++...... ... ...-.++.|+.....-+.|.......+||+.++.....+.... -.-.
T Consensus 1165 S~PlsaLW~~~s~~~~-------~Hs---f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n 1234 (1516)
T KOG1832|consen 1165 SSPLSALWDASSTGGP-------RHS---FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNN 1234 (1516)
T ss_pred cCchHHHhccccccCc-------ccc---ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcc
Confidence 2 4678998763321 111 2344678888765555566556678999999988765543322 1236
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEe
Q 024868 159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG 238 (261)
Q Consensus 159 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~ 238 (261)
...|+|+..+++ .|| .+||.+..+.++.+..-.. --.-.|+|.|.. ++..+ .|||+++.+.+.
T Consensus 1235 ~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~--~~~G~FHP~g~e-----VIINS-----EIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1235 LAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTD--YGGGGFHPSGNE-----VIINS-----EIWDMRTFKLLH 1297 (1516)
T ss_pred ccccCCCcceEe---eCc--eeeeeccHHHHhhhhhhee--cccccccCCCce-----EEeec-----hhhhhHHHHHHh
Confidence 788999988776 355 5899998888877754332 223359999998 34433 499999988776
Q ss_pred eeeccCcCeeEEEEeeCCCEE
Q 024868 239 HKRLLRKPASVLSISLDGKYL 259 (261)
Q Consensus 239 ~~~~~~~~v~~~~~s~dg~~l 259 (261)
..... .-+.+.|+..|..+
T Consensus 1298 ~VP~L--dqc~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1298 SVPSL--DQCAVTFNSTGDVM 1316 (1516)
T ss_pred cCccc--cceEEEeccCccch
Confidence 55433 23568888887754
No 293
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.99 E-value=1.2e-08 Score=76.05 Aligned_cols=80 Identities=11% Similarity=0.235 Sum_probs=66.0
Q ss_pred EeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCe
Q 024868 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH 135 (261)
Q Consensus 56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 135 (261)
...+.+|.+.+.+++|.|....|.+|..|..+.+||+....... .....|...|..+..-+..+.+.+++.||.
T Consensus 190 i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~------~el~gh~~kV~~l~~~~~t~~l~S~~edg~ 263 (404)
T KOG1409|consen 190 ITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA------YELQGHNDKVQALSYAQHTRQLISCGEDGG 263 (404)
T ss_pred EEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee------eeeccchhhhhhhhhhhhheeeeeccCCCe
Confidence 45788999999999999999999999999999999998765311 223345667777777777888999999999
Q ss_pred EEEEEc
Q 024868 136 LRIMHW 141 (261)
Q Consensus 136 i~~~d~ 141 (261)
|.+|++
T Consensus 264 i~~w~m 269 (404)
T KOG1409|consen 264 IVVWNM 269 (404)
T ss_pred EEEEec
Confidence 999998
No 294
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.98 E-value=2.6e-07 Score=67.58 Aligned_cols=176 Identities=15% Similarity=0.158 Sum_probs=109.3
Q ss_pred eEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC------CCeEEEE
Q 024868 8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS------GDDFVCS 81 (261)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~ 81 (261)
..++|+|+ ..++|.+.+.| .|..||..+..+-.-+........-...|..+.|-+. ...|++-
T Consensus 47 Rkl~WSpD---~tlLa~a~S~G--------~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi 115 (282)
T PF15492_consen 47 RKLAWSPD---CTLLAYAESTG--------TIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVI 115 (282)
T ss_pred eEEEECCC---CcEEEEEcCCC--------eEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEE
Confidence 46789985 67999999999 8999998766542211111111122356777777542 2246666
Q ss_pred ecCCcEEEEEEeCCccccceeeeeCCCCC-CCCCeEEEEEeeCCcEEEEecc----CC-------eEEEEEccCceE---
Q 024868 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSVDGSRFAAGGV----DG-------HLRIMHWPSLRI--- 146 (261)
Q Consensus 82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~----d~-------~i~~~d~~~~~~--- 146 (261)
..+|.++-|-+..+....-.......... ....|.++.++|.-++|++|+. ++ -+.-|.+-++.+
T Consensus 116 ~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk 195 (282)
T PF15492_consen 116 NYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK 195 (282)
T ss_pred eccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEE
Confidence 78888888887543211111111111111 2467999999999888888762 11 145565422110
Q ss_pred -----------------Eeecc---------ccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee
Q 024868 147 -----------------ILDEP---------KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR 194 (261)
Q Consensus 147 -----------------~~~~~---------~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 194 (261)
..++. .....|..|..||||+.||+...+|.|.+|++.+-++...+..
T Consensus 196 ~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 196 QVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred EccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 00111 1234699999999999999999999999999988776666543
No 295
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=3.2e-09 Score=79.11 Aligned_cols=131 Identities=11% Similarity=0.147 Sum_probs=99.7
Q ss_pred CCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEE
Q 024868 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMH 140 (261)
Q Consensus 62 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d 140 (261)
....|.++.|...++.+..|..+|.|..+|++....... .....+-|...|+++..-. ++.+|.+.+.+|+|.+||
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~---~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD 327 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG---WCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYD 327 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC---cceEEEEcCcchhhhhhhccccceEeeccCcCceeEee
Confidence 456799999999899999999999999999987632111 1123344667888887766 678888888999999999
Q ss_pred ccCceE---EeeccccCCc--eeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeec
Q 024868 141 WPSLRI---ILDEPKAHKS--VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN 195 (261)
Q Consensus 141 ~~~~~~---~~~~~~~~~~--v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 195 (261)
.+--+. +....+|-.. -.-+-..+....++++++|...+||.++.|..+.+++..
T Consensus 328 ~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 328 LRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 986655 6666665542 223345677778899999999999999999998887644
No 296
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.94 E-value=1.8e-07 Score=69.96 Aligned_cols=202 Identities=10% Similarity=0.140 Sum_probs=130.6
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
.|++++++.+. ...+++|-..| .+..|.....- . .-........|...+..+-|+...+++++.+.|
T Consensus 69 ~~~~~~~y~~e---~~~L~vg~~ng--------tvtefs~sedf-n-km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~d 135 (404)
T KOG1409|consen 69 SPCSAMEYVSE---SRRLYVGQDNG--------TVTEFALSEDF-N-KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKD 135 (404)
T ss_pred CCceEeeeecc---ceEEEEEEecc--------eEEEEEhhhhh-h-hcchhhhhhhhhcceeeEEecCCceeEEEeccc
Confidence 35566666663 45666776666 66666543210 0 001133456789999999999988999998888
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEc--cCceEEeeccccCCceeEEEE
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW--PSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~--~~~~~~~~~~~~~~~v~~~~~ 162 (261)
..+.---.+.+..... ..-.....++.+.-. +...|...|.+.+..+ ..-..+..+.+|.+.+.+++|
T Consensus 136 k~~~~hc~e~~~~lg~--------Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~W 205 (404)
T KOG1409|consen 136 KQFAWHCTESGNRLGG--------YNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKW 205 (404)
T ss_pred cceEEEeeccCCcccc--------eEeeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEE
Confidence 7554333343332110 000111122222222 4555666666655544 344556677788889999999
Q ss_pred cCCCCEEEEecCCCcEEEEEccCCcEE-EEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868 163 SLDSEFLATTSTDGSARIWKTEDGVAW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (261)
Q Consensus 163 s~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~ 235 (261)
.|..+.|.++..|..+.+||+--++-+ ..+.+|.. .|..+...+--+. +.+++.||.|.+||++...
T Consensus 206 d~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~-kV~~l~~~~~t~~-----l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 206 DPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHND-KVQALSYAQHTRQ-----LISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred cCCCcEEEeccccCceEEEeccCCcceeeeeccchh-hhhhhhhhhhhee-----eeeccCCCeEEEEecccee
Confidence 999999999999999999999754433 34455544 5888877777776 6899999999999997543
No 297
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.92 E-value=1.6e-08 Score=74.66 Aligned_cols=194 Identities=13% Similarity=0.158 Sum_probs=122.4
Q ss_pred CCCceEEEECCCCCeEEEEecCCcEEEEEEeCCc-cccceeee---------eCCCCCCCCCeEEEEEeeCC--cEEEEe
Q 024868 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA-TDINLLAK---------KMPPLQDAGPQKCLSFSVDG--SRFAAG 130 (261)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~-~~~~~~~~---------~~~~~~~~~~v~~~~~s~~~--~~l~~~ 130 (261)
.+.|+++.|...|.+|++|...|.|.+|.-.... +..+.+.. ....+.-...|..+.|-.++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4578999999999999999999999999765432 22222111 11112223567888887654 245555
Q ss_pred ccCCeEEEEEccCce-------------------EE------------------e----e-c-cccCCceeEEEEcCCCC
Q 024868 131 GVDGHLRIMHWPSLR-------------------II------------------L----D-E-PKAHKSVLDMDFSLDSE 167 (261)
Q Consensus 131 ~~d~~i~~~d~~~~~-------------------~~------------------~----~-~-~~~~~~v~~~~~s~~~~ 167 (261)
+.|.+|++|.+.... ++ . + . ..|.-.+.+++|+.|.+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 689999999874320 00 0 0 0 11223477899988888
Q ss_pred EEEEecCCCcEEEEEccCCcE---EEEEeecC----CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE----
Q 024868 168 FLATTSTDGSARIWKTEDGVA---WTFLTRNS----DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---- 236 (261)
Q Consensus 168 ~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~----~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~---- 236 (261)
.++++ +|-.|.+|++.-... +..++.+. ...|++..|+|....+| .-++..|.|++-|++....
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~f----mYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVF----MYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceE----EEecCCCcEEehhhhhhhhccCc
Confidence 77766 578899999874322 12222222 12478899999877643 3345678999999984221
Q ss_pred --Eee----------eeccCcCeeEEEEeeCCCEEeC
Q 024868 237 --IGH----------KRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 237 --~~~----------~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+.. +......|+++.|+++|+|++.
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls 297 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS 297 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE
Confidence 111 1111257889999999999873
No 298
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.92 E-value=1.2e-08 Score=83.41 Aligned_cols=222 Identities=11% Similarity=0.102 Sum_probs=141.2
Q ss_pred eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCC-CeEEEEecCC
Q 024868 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCSTTNG 85 (261)
Q Consensus 7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg 85 (261)
|-.+.|+|.+.....++..+... ...|+.... .....+..+.+|+..|+.+.|+|.. ..+++++.|.
T Consensus 70 vad~qws~h~a~~~wiVsts~qk---------aiiwnlA~s---s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt 137 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQK---------AIIWNLAKS---SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDT 137 (1081)
T ss_pred hcceecccCCCCceeEEecCcch---------hhhhhhhcC---CccceEEEEecCccceeccccCCCCCcceeeccccc
Confidence 44567888876555566554332 233443221 1223467889999999999999854 5678999999
Q ss_pred cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE-EeeccccCCceeEEEEcC
Q 024868 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-ILDEPKAHKSVLDMDFSL 164 (261)
Q Consensus 86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~s~ 164 (261)
.+..||+++....... ...-+..-..++|+-..-.+++.+..+.+++||.+.+.. +....++-..+..++|..
T Consensus 138 ~vh~wd~rSp~~p~ys------~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr 211 (1081)
T KOG0309|consen 138 YVHAWDMRSPHRPFYS------TSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNR 211 (1081)
T ss_pred cceeeeccCCCcceee------eecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhh
Confidence 9999999887642221 112245567789987443444445777899999987764 344555556788888865
Q ss_pred -CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC----------
Q 024868 165 -DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST---------- 233 (261)
Q Consensus 165 -~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~---------- 233 (261)
-...+.+.+.|++|+.||................+++..++.|-|+-.++ ....+ +..+.+++.+.
T Consensus 212 ~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~--mp~~G-~n~v~~~~c~n~d~e~n~~~~ 288 (1081)
T KOG0309|consen 212 FKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI--MPMVG-GNMVPQLRCENSDLEWNVFDL 288 (1081)
T ss_pred hhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEe--ccccC-CeeeeeccccchhhhhccccC
Confidence 33467888899999999987543322222334567888889998876322 11222 22555555432
Q ss_pred CeEEeeeeccCcCeeE
Q 024868 234 WNKIGHKRLLRKPASV 249 (261)
Q Consensus 234 ~~~~~~~~~~~~~v~~ 249 (261)
.+++..+.+|...|..
T Consensus 289 ~~pVh~F~GH~D~V~e 304 (1081)
T KOG0309|consen 289 NTPVHTFVGHDDVVLE 304 (1081)
T ss_pred CcceeeecCcchHHHH
Confidence 2456667777654433
No 299
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.90 E-value=8.1e-06 Score=60.52 Aligned_cols=201 Identities=12% Similarity=0.100 Sum_probs=113.9
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG 85 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 85 (261)
.+..++|+|+. ..++++....+ .|+.++.++.. +....+.+ .+....+++..++.++++.-.++
T Consensus 23 e~SGLTy~pd~--~tLfaV~d~~~--------~i~els~~G~v-----lr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~ 86 (248)
T PF06977_consen 23 ELSGLTYNPDT--GTLFAVQDEPG--------EIYELSLDGKV-----LRRIPLDG-FGDYEGITYLGNGRYVLSEERDQ 86 (248)
T ss_dssp -EEEEEEETTT--TEEEEEETTTT--------EEEEEETT--E-----EEEEE-SS--SSEEEEEE-STTEEEEEETTTT
T ss_pred CccccEEcCCC--CeEEEEECCCC--------EEEEEcCCCCE-----EEEEeCCC-CCCceeEEEECCCEEEEEEcCCC
Confidence 48889999863 67888888888 89999986433 23444554 35788999988887776655589
Q ss_pred cEEEEEEeCCcccccee--eee-CCC-CCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC---ceEE--eec---c--
Q 024868 86 GCKLFEVYGGATDINLL--AKK-MPP-LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS---LRII--LDE---P-- 151 (261)
Q Consensus 86 ~i~i~~~~~~~~~~~~~--~~~-~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~---~~~~--~~~---~-- 151 (261)
.+.++++.......... ... ... ..+...+..++|+|.++.|+++-......+|.++. .... ... .
T Consensus 87 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~ 166 (248)
T PF06977_consen 87 RLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDD 166 (248)
T ss_dssp EEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-H
T ss_pred cEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccc
Confidence 99999995543211111 111 111 12345689999999877777776666666666643 1111 111 1
Q ss_pred -ccCCceeEEEEcCC-CCEEEEecCCCcEEEEEccCCcEEEEEeecCC--------CceEEEEEecCCCcceEEEEEeeC
Q 024868 152 -KAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSD--------EKIELCRFSKDGTKPFLFCTVQRG 221 (261)
Q Consensus 152 -~~~~~v~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------~~v~~~~~~p~~~~~~~~~~~~~~ 221 (261)
.....+.++.++|. +++++.+..+..+.++| .+|+++..+.-..+ .....++|.++|+. ...+
T Consensus 167 ~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L------YIvs 239 (248)
T PF06977_consen 167 KLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL------YIVS 239 (248)
T ss_dssp T--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--E------EEEE
T ss_pred cceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCE------EEEc
Confidence 11235788999995 56667777788899999 67887776653321 13778999999985 4444
Q ss_pred CCcEEEEE
Q 024868 222 DKALLAVY 229 (261)
Q Consensus 222 ~d~~i~~~ 229 (261)
+.+..++|
T Consensus 240 EpNlfy~f 247 (248)
T PF06977_consen 240 EPNLFYRF 247 (248)
T ss_dssp TTTEEEEE
T ss_pred CCceEEEe
Confidence 56666655
No 300
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=1.8e-08 Score=82.21 Aligned_cols=162 Identities=12% Similarity=0.161 Sum_probs=119.8
Q ss_pred CCceEEEECCCCCeEEEEecCCcEEEEEEeCCcccccee--------eeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCe
Q 024868 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLL--------AKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH 135 (261)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 135 (261)
....+++|+.+..++++|+.||.+++..+.+.....+.. .-.+..-.|...|.-+.|+.+.+.|-+...+|-
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 457899999999999999999999999987654322111 111223345688999999999999999999999
Q ss_pred EEEEEccCceEEeeccc--cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEE-EEEeecCCCceEEEEEecCCCcc
Q 024868 136 LRIMHWPSLRIILDEPK--AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW-TFLTRNSDEKIELCRFSKDGTKP 212 (261)
Q Consensus 136 i~~~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~ 212 (261)
|.+|-+-.+.-...+.. ..+-|.+++|+.||..++..-.||.|.+=.+...+.- +.+++. ....+.|++|.+.
T Consensus 95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~---~l~hv~ws~D~~~- 170 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ---LLAHVLWSEDLEQ- 170 (1189)
T ss_pred EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh---eccceeecccHHH-
Confidence 99999877764433332 2346899999999999999999998888776533221 122221 2557889999998
Q ss_pred eEEEEEeeCCCcEEEEEECCC
Q 024868 213 FLFCTVQRGDKALLAVYDIST 233 (261)
Q Consensus 213 ~~~~~~~~~~d~~i~~~d~~~ 233 (261)
+..+-.+|.+.+||...
T Consensus 171 ----~Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 171 ----ALFKKANGETHLYDNQG 187 (1189)
T ss_pred ----HHhhhcCCcEEEecccc
Confidence 45666778999999763
No 301
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.89 E-value=8.7e-09 Score=53.34 Aligned_cols=38 Identities=29% Similarity=0.546 Sum_probs=34.5
Q ss_pred eEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEE
Q 024868 145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK 182 (261)
Q Consensus 145 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd 182 (261)
+.+..+..|.+.|.+++|+|++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45667778888999999999999999999999999997
No 302
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.87 E-value=1.2e-08 Score=52.82 Aligned_cols=36 Identities=17% Similarity=0.388 Sum_probs=34.1
Q ss_pred EeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEE
Q 024868 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFE 91 (261)
Q Consensus 56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~ 91 (261)
...+.+|.+.|.+++|+|+++.|++++.|+.|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 567899999999999999999999999999999997
No 303
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.87 E-value=2.3e-06 Score=64.21 Aligned_cols=175 Identities=14% Similarity=0.145 Sum_probs=105.3
Q ss_pred eEEEECC-CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEe-eCCcEEEEeccCCeEEEEEccCc
Q 024868 67 MTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFS-VDGSRFAAGGVDGHLRIMHWPSL 144 (261)
Q Consensus 67 ~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d~~i~~~d~~~~ 144 (261)
.++.|.+ ++.++++-...+.|+.|+..++.... ... .....+++. ++++++++. ..+ +.++|..++
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~---------~~~-~~~~G~~~~~~~g~l~v~~-~~~-~~~~d~~~g 70 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV---------IDL-PGPNGMAFDRPDGRLYVAD-SGG-IAVVDPDTG 70 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE---------EES-SSEEEEEEECTTSEEEEEE-TTC-EEEEETTTT
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE---------Eec-CCCceEEEEccCCEEEEEE-cCc-eEEEecCCC
Confidence 3678888 56666665567889999988765311 111 126778888 666555544 444 566698887
Q ss_pred eEEeeccc-----cCCceeEEEEcCCCCEEEEecCC--------CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868 145 RIILDEPK-----AHKSVLDMDFSLDSEFLATTSTD--------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (261)
Q Consensus 145 ~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 211 (261)
+....... .......+++.|+|++.++.... +.+..++.. ++...... ... ..+.++|+|+++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~-~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLG-FPNGIAFSPDGKT 147 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EES-SEEEEEEETTSSE
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-Ccc-cccceEECCcchh
Confidence 54322221 12357899999999977775543 446666665 45433333 333 4789999999997
Q ss_pred ceEEEEEeeCCCcEEEEEECCCC-e-E--Eeee-eccC--cCeeEEEEeeCCCEEe
Q 024868 212 PFLFCTVQRGDKALLAVYDISTW-N-K--IGHK-RLLR--KPASVLSISLDGKYLA 260 (261)
Q Consensus 212 ~~~~~~~~~~~d~~i~~~d~~~~-~-~--~~~~-~~~~--~~v~~~~~s~dg~~la 260 (261)
+| ++-+..+.|..|++... . . ...+ .... +..-.+++..+|+..+
T Consensus 148 ly----v~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~v 199 (246)
T PF08450_consen 148 LY----VADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWV 199 (246)
T ss_dssp EE----EEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEE
T ss_pred ee----ecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEE
Confidence 42 56677788999998532 2 1 1111 1122 2356788888887543
No 304
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.86 E-value=7.9e-07 Score=71.37 Aligned_cols=116 Identities=12% Similarity=0.147 Sum_probs=80.6
Q ss_pred CCceEEEECC-CCCeEEEE----ecCCc----EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC
Q 024868 64 GDPMTIAVNP-SGDDFVCS----TTNGG----CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (261)
Q Consensus 64 ~~v~~~~~~~-~~~~l~~~----~~dg~----i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 134 (261)
....++.|+. +...+.+. +.+|. -.+|++...+... .....++....+.+++++|+...++.|+.||
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqr----vsvtsipL~s~v~~ca~sp~E~kLvlGC~Dg 281 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQR----VSVTSIPLPSQVICCARSPSEDKLVLGCEDG 281 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeE----EEEEEEecCCcceEEecCcccceEEEEecCC
Confidence 3456777775 33334332 22332 3456665443211 1233344567899999999999999999999
Q ss_pred eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccC
Q 024868 135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED 185 (261)
Q Consensus 135 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~ 185 (261)
.|.+||...+... .....-....++|+|+|..+++++..|.+++||+.-
T Consensus 282 SiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 282 SIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred eEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 9999998766432 222333578899999999999999999999999863
No 305
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=1.9e-07 Score=77.12 Aligned_cols=170 Identities=15% Similarity=0.160 Sum_probs=117.2
Q ss_pred CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC
Q 024868 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (261)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 143 (261)
+.+++.+++ ++.|+.|..+|.+++++...... ..+.+... ..+|.++++|+.||++.+-.+-+
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~---------~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~ 102 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNPK---------TNFDHSSS------ILEGEYVASCSDDGKVVIGSLFT 102 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCccc---------cccccccc------ccCCceEEEecCCCcEEEeeccC
Confidence 456666664 67899999999999999876531 11111111 55899999999999999988877
Q ss_pred ceEEeeccccCCceeEEEEcCC-----CCEEEEecCCCcEEEEEccC-CcEEEEEeecCCCceEEEEEecCCCcceEEEE
Q 024868 144 LRIILDEPKAHKSVLDMDFSLD-----SEFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT 217 (261)
Q Consensus 144 ~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~ 217 (261)
.+... ....+.++.+++++|+ .+.+++|+..| +.++.-+= |...........++|.++.|. |.+ +
T Consensus 103 ~~~~~-~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~l-----I 173 (846)
T KOG2066|consen 103 DDEIT-QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNL-----I 173 (846)
T ss_pred Cccce-eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcE-----E
Confidence 76643 3345668999999998 56899999888 77765431 222222222334579999995 565 5
Q ss_pred EeeCCCcEEEEEECCCCeEEeeeeccCc------CeeEEEEeeCCCEEe
Q 024868 218 VQRGDKALLAVYDISTWNKIGHKRLLRK------PASVLSISLDGKYLA 260 (261)
Q Consensus 218 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~------~v~~~~~s~dg~~la 260 (261)
+.++++| |++||+.+++.+..+..... ....+.|.++.+.++
T Consensus 174 AWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI 221 (846)
T KOG2066|consen 174 AWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI 221 (846)
T ss_pred EEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE
Confidence 7777777 99999998887755543322 235678887776653
No 306
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=7.4e-08 Score=76.60 Aligned_cols=196 Identities=11% Similarity=0.138 Sum_probs=126.6
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccc
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD 98 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~ 98 (261)
.+-+++++.|. .+++|...++..... ........+.|+.+|.++.|-.+-++++++ ||.+.+||---++..
T Consensus 747 ENSFiSASkDK------TVKLWSik~EgD~~~-tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~L 817 (1034)
T KOG4190|consen 747 ENSFISASKDK------TVKLWSIKPEGDEIG-TSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLL 817 (1034)
T ss_pred ccceeeccCCc------eEEEEEeccccCccc-cceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchh
Confidence 34556666666 347777777654432 223466788999999999999888888764 777999998766542
Q ss_pred cceeeeeCCCCCCCCCeEEEEEee--CCcEEEEe-ccCCeEEEEEccCceEEeecc-----ccCCceeEEEEcCCCCEEE
Q 024868 99 INLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAG-GVDGHLRIMHWPSLRIILDEP-----KAHKSVLDMDFSLDSEFLA 170 (261)
Q Consensus 99 ~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~ 170 (261)
.+.. .-..++.+..+..-| +...+..+ +...+++++|.+..+-...+. ..+.-+++++..|.|++++
T Consensus 818 aq~~-----dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lA 892 (1034)
T KOG4190|consen 818 AQME-----DAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLA 892 (1034)
T ss_pred Hhhh-----cCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhh
Confidence 2211 111223333333334 34444444 678899999998876443332 2234589999999999999
Q ss_pred EecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEE-EECCCCe
Q 024868 171 TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAV-YDISTWN 235 (261)
Q Consensus 171 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~-~d~~~~~ 235 (261)
.+-.+|.|.+.|.++|+.+..+..-... ...++ .|..+. ++....|.++.+ |..-.+.
T Consensus 893 a~LSnGci~~LDaR~G~vINswrpmecd-llqla-apsdq~-----L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 893 AALSNGCIAILDARNGKVINSWRPMECD-LLQLA-APSDQA-----LAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred HHhcCCcEEEEecCCCceeccCCcccch-hhhhc-CchhHH-----HHhhcccceeEeeehhcCCe
Confidence 9999999999999999988876543221 22222 244444 355555666666 6655444
No 307
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.85 E-value=4.5e-06 Score=62.27 Aligned_cols=187 Identities=19% Similarity=0.199 Sum_probs=110.1
Q ss_pred EEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccc
Q 024868 21 LVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN 100 (261)
Q Consensus 21 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 100 (261)
.+.++..++ .++.+|..+++... ...+.+..... . ..++..++++..++.++.+|..+++....
T Consensus 38 ~v~~~~~~~--------~l~~~d~~tG~~~W----~~~~~~~~~~~--~--~~~~~~v~v~~~~~~l~~~d~~tG~~~W~ 101 (238)
T PF13360_consen 38 RVYVASGDG--------NLYALDAKTGKVLW----RFDLPGPISGA--P--VVDGGRVYVGTSDGSLYALDAKTGKVLWS 101 (238)
T ss_dssp EEEEEETTS--------EEEEEETTTSEEEE----EEECSSCGGSG--E--EEETTEEEEEETTSEEEEEETTTSCEEEE
T ss_pred EEEEEcCCC--------EEEEEECCCCCEEE----Eeeccccccce--e--eecccccccccceeeeEecccCCcceeee
Confidence 344445666 89999988877511 22222111111 1 22455666677888899999888876444
Q ss_pred eeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCc----e-------eEEEEcCCCCEE
Q 024868 101 LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS----V-------LDMDFSLDSEFL 169 (261)
Q Consensus 101 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~----v-------~~~~~s~~~~~l 169 (261)
........ ...........++..++++..++.+..+|.++|+.+......... + ..+.+. ++ .+
T Consensus 102 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v 176 (238)
T PF13360_consen 102 IYLTSSPP---AGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RV 176 (238)
T ss_dssp EEE-SSCT---CSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EE
T ss_pred eccccccc---cccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EE
Confidence 21111111 111222333334778888878999999999999987766543321 1 222233 44 66
Q ss_pred EEecCCCc-EEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEe
Q 024868 170 ATTSTDGS-ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG 238 (261)
Q Consensus 170 ~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~ 238 (261)
+.++.++. +.+ |+.+++.+.... .. .+... ..+++.. ++..+.++.+..||+++|+.+-
T Consensus 177 ~~~~~~g~~~~~-d~~tg~~~w~~~--~~-~~~~~-~~~~~~~-----l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 177 YVSSGDGRVVAV-DLATGEKLWSKP--IS-GIYSL-PSVDGGT-----LYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EEECCTSSEEEE-ETTTTEEEEEEC--SS--ECEC-EECCCTE-----EEEEETTTEEEEEETTTTEEEE
T ss_pred EEEcCCCeEEEE-ECCCCCEEEEec--CC-CccCC-ceeeCCE-----EEEEeCCCEEEEEECCCCCEEe
Confidence 66666775 555 999999664222 22 23331 4566666 3444478999999999998763
No 308
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=3.6e-06 Score=70.39 Aligned_cols=197 Identities=11% Similarity=0.104 Sum_probs=123.7
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCC-ceEEEECCCCCeEEEEecCC-----cEEEEEE
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD-PMTIAVNPSGDDFVCSTTNG-----GCKLFEV 92 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~i~~~ 92 (261)
...+|.|..+| .|+.++..-.. ...++.+... |..+-...+.++|++.+.|+ .+++|++
T Consensus 35 ~~~vvigt~~G--------~V~~Ln~s~~~-------~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~l 99 (933)
T KOG2114|consen 35 TGSVVIGTADG--------RVVILNSSFQL-------IRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDL 99 (933)
T ss_pred CceEEEeeccc--------cEEEeccccee-------eehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecc
Confidence 45788888888 88877754322 2345556555 44444444446777777764 4899999
Q ss_pred eCCcccc--ceee-eeC---CCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEcc----CceEEeeccccCCceeEEEE
Q 024868 93 YGGATDI--NLLA-KKM---PPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP----SLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 93 ~~~~~~~--~~~~-~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~----~~~~~~~~~~~~~~v~~~~~ 162 (261)
+....-. .... ..+ .......++.+++.+.+-+.+|+|-.+|.|..+.-+ .+..........++|+.+.+
T Consensus 100 ek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~ 179 (933)
T KOG2114|consen 100 EKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL 179 (933)
T ss_pred cccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence 7653211 1110 001 111235678999999999999999999999988522 11222222234458999999
Q ss_pred cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (261)
Q Consensus 163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~ 236 (261)
..+++.++....-.+|.+|.+....+......+++....|..|++.... ++.++ +..+.+||....++
T Consensus 180 ~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~q-----fIca~-~e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 180 RSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQ-----FICAG-SEFLYFYDSDGRGP 247 (933)
T ss_pred ecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCcc-----EEEec-CceEEEEcCCCcce
Confidence 9888874444455789999998444344433445557888888876664 23333 34699999875443
No 309
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.83 E-value=2.1e-08 Score=72.11 Aligned_cols=162 Identities=13% Similarity=0.136 Sum_probs=97.1
Q ss_pred CceeeEEEEEeeCCc-------ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCC
Q 024868 4 GGTVTCGSWIKRPEN-------VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD 76 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~-------~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 76 (261)
.+|-.|++.+..|+. .+-+++|+.++ .+..++.+. .+.. ......-...-.+.++...++
T Consensus 79 i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg--------~~~v~s~~~-~~~~----~~~i~~~~~~~as~~~~~~~~ 145 (319)
T KOG4714|consen 79 IDPFKVLAKNSEIDPNDACTMTDNRVCIGYADG--------SLAVFSTDK-DLAL----MSRIPSIHSGSASRKICRHGN 145 (319)
T ss_pred cCceeeeeccCCCCCcccccccCCceEecCCCc--------eEEEEechH-HHhh----hhhcccccccccccceeeccc
Confidence 455566665433321 34567777777 555565544 2100 111111111122333334455
Q ss_pred eEEEEe-----cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeec
Q 024868 77 DFVCST-----TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDE 150 (261)
Q Consensus 77 ~l~~~~-----~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 150 (261)
.+.++. .-+..+.|+++..+. + .........|.+++-+| +.+.+++|+.||.+-+||.++......+
T Consensus 146 ~i~s~~~g~~n~~d~~~a~~~~p~~t----~---~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~ 218 (319)
T KOG4714|consen 146 SILSGGCGNWNAQDNFYANTLDPIKT----L---IPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL 218 (319)
T ss_pred EEecCCcceEeeccceeeeccccccc----c---cccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH
Confidence 554432 224466666654432 1 11111234588888888 4567778889999999999987655444
Q ss_pred -cccCCceeEEEEcC-CCCEEEEecCCCcEEEEEccC
Q 024868 151 -PKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTED 185 (261)
Q Consensus 151 -~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~ 185 (261)
..|+.++..+-|+| ++..|++++.||.+.-||..+
T Consensus 219 l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 219 LKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred HHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 45666899999999 788999999999999999764
No 310
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.82 E-value=3.1e-07 Score=72.65 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=93.2
Q ss_pred CCCCCeEEEEe---------cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEcc
Q 024868 72 NPSGDDFVCST---------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (261)
Q Consensus 72 ~~~~~~l~~~~---------~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 142 (261)
|||+++++... ..+.+.+||+.++.... .......+....|||+|+.++.. .++.|++++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------l~~~~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~ 71 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------LTPPPPKLQDAKWSPDGKYIAFV-RDNNLYLRDLA 71 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------SS-EETTBSEEEE-SSSTEEEEE-ETTEEEEESST
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------CcCCccccccceeecCCCeeEEE-ecCceEEEECC
Confidence 57888777642 23678999998865311 11114577889999999999998 67889999987
Q ss_pred CceEEeecccc-----------------CCceeEEEEcCCCCEEEEecCC-Cc---------------------------
Q 024868 143 SLRIILDEPKA-----------------HKSVLDMDFSLDSEFLATTSTD-GS--------------------------- 177 (261)
Q Consensus 143 ~~~~~~~~~~~-----------------~~~v~~~~~s~~~~~l~~~~~d-~~--------------------------- 177 (261)
+++..+..... -+.-..+.||||+++|+....| ..
T Consensus 72 ~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~ 151 (353)
T PF00930_consen 72 TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKA 151 (353)
T ss_dssp TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BT
T ss_pred CCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCC
Confidence 77554333322 1123568899999998865432 22
Q ss_pred --------EEEEEccCCcEEEE-Ee---ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868 178 --------ARIWKTEDGVAWTF-LT---RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (261)
Q Consensus 178 --------i~iwd~~~~~~~~~-~~---~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~ 236 (261)
+.|+|+.+++.... .. ......+..+.|.++++.+++..+--....-.+.++|..+++.
T Consensus 152 G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~ 222 (353)
T PF00930_consen 152 GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET 222 (353)
T ss_dssp TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC
T ss_pred CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce
Confidence 33344444433211 11 1123347789999999854433233334445677888877654
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.77 E-value=7.2e-06 Score=61.85 Aligned_cols=186 Identities=16% Similarity=0.112 Sum_probs=116.2
Q ss_pred CCceEEEECC-CCCeEEEEecCC-cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-----cCCeE
Q 024868 64 GDPMTIAVNP-SGDDFVCSTTNG-GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-----VDGHL 136 (261)
Q Consensus 64 ~~v~~~~~~~-~~~~l~~~~~dg-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~d~~i 136 (261)
.....++.+| .+..++.+-.-| .+.+||..++.....+.... ...-.-.-.||+||++|++.- ..|.|
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~-----gRHFyGHg~fs~dG~~LytTEnd~~~g~G~I 79 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPP-----GRHFYGHGVFSPDGRLLYTTENDYETGRGVI 79 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCC-----CCEEecCEEEcCCCCEEEEeccccCCCcEEE
Confidence 3455788889 445555665554 56789998887643322211 111223468999999999864 34789
Q ss_pred EEEEcc-CceEEeeccccCCceeEEEEcCCCCEEEEecC------------------CCcEEEEEccCCcEEEEEee---
Q 024868 137 RIMHWP-SLRIILDEPKAHKSVLDMDFSLDSEFLATTST------------------DGSARIWKTEDGVAWTFLTR--- 194 (261)
Q Consensus 137 ~~~d~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------------------d~~i~iwd~~~~~~~~~~~~--- 194 (261)
-+||.. +-+.+..+..+.-....+.+.|||+.|+.+.. +-++...|..+|+.+.+...
T Consensus 80 gVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~ 159 (305)
T PF07433_consen 80 GVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD 159 (305)
T ss_pred EEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc
Confidence 999998 44555555544445678889999977766422 12466777888888776432
Q ss_pred cCCCceEEEEEecCCCcceEEEEEeeCCCc-------EEEEEECCCCeEEeeee-------ccCcCeeEEEEeeCCCEEe
Q 024868 195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKA-------LLAVYDISTWNKIGHKR-------LLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 195 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~-------~i~~~d~~~~~~~~~~~-------~~~~~v~~~~~s~dg~~la 260 (261)
.+...++.+++.++|.. ++.....| .+.+++... .+..+. ...+.+-+++++++|.++|
T Consensus 160 ~~~lSiRHLa~~~~G~V-----~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia 232 (305)
T PF07433_consen 160 LHQLSIRHLAVDGDGTV-----AFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIA 232 (305)
T ss_pred ccccceeeEEecCCCcE-----EEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEE
Confidence 22235999999999985 22222222 344444332 221121 2346788999999998876
Q ss_pred C
Q 024868 261 M 261 (261)
Q Consensus 261 ~ 261 (261)
+
T Consensus 233 ~ 233 (305)
T PF07433_consen 233 V 233 (305)
T ss_pred E
Confidence 3
No 312
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=1.5e-05 Score=63.66 Aligned_cols=184 Identities=12% Similarity=0.124 Sum_probs=124.9
Q ss_pred CceEEEECCCCCeEEEEe-cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc---CCeEEEEE
Q 024868 65 DPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---DGHLRIMH 140 (261)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~~~d 140 (261)
....+++++.++.+.... .+..+.+.|......... ..-......++++|+++.+.++.. ++++.+.|
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~--------~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid 146 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS--------IPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVID 146 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE--------eeeccCCceEEECCCCCEEEEEecccCCceEEEEe
Confidence 355788889888655444 458899999665543111 111124577999999988877754 68899999
Q ss_pred ccCceEEeeccccCCceeEEEEcCCCCEEEEec-CCCcEEEEEccCCcEEEEEe----ecCCCceEEEEEecCCCcceEE
Q 024868 141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLT----RNSDEKIELCRFSKDGTKPFLF 215 (261)
Q Consensus 141 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~~~~~ 215 (261)
-.+.+..........+ ..++++|+|+.++... .++.+.+.|.......+ -. .........+.++|+|++.|+
T Consensus 147 ~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV- 223 (381)
T COG3391 147 AATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYV- 223 (381)
T ss_pred CCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEE-
Confidence 8888877665444445 8999999999766554 68899999977665553 11 011223567899999997543
Q ss_pred EEEeeCCCcEEEEEECCCCeEEeeeeccCc-CeeEEEEeeCCCEEe
Q 024868 216 CTVQRGDKALLAVYDISTWNKIGHKRLLRK-PASVLSISLDGKYLA 260 (261)
Q Consensus 216 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~dg~~la 260 (261)
....+.++.+...|..++........... ....+..+|+|+++.
T Consensus 224 -~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~y 268 (381)
T COG3391 224 -ANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAY 268 (381)
T ss_pred -EeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEE
Confidence 33344457999999998877654222222 456788999998764
No 313
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.75 E-value=7.6e-06 Score=65.90 Aligned_cols=156 Identities=12% Similarity=0.044 Sum_probs=90.8
Q ss_pred eEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccCCeEEEEEccCceEEeeccccC
Q 024868 77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH 154 (261)
Q Consensus 77 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 154 (261)
.++.+..+|.+..+|..+++.....................+.-+| .+..+++++.+|.+..+|..+++.+.+....
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~- 285 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG- 285 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC-
Confidence 4566677888888888877653321100000000000011111122 2445666668899999999999887654321
Q ss_pred CceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (261)
Q Consensus 155 ~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~ 234 (261)
....+. .++..++.++.++.+..+|..+|+.+............+... -++. ++.++.+|.++..|..+|
T Consensus 286 -~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v-~~g~------l~v~~~~G~l~~ld~~tG 355 (394)
T PRK11138 286 -SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL-YNGY------LVVGDSEGYLHWINREDG 355 (394)
T ss_pred -CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE-ECCE------EEEEeCCCEEEEEECCCC
Confidence 111222 246677788889999999999998765443211111222222 2343 466788999999999999
Q ss_pred eEEeeeecc
Q 024868 235 NKIGHKRLL 243 (261)
Q Consensus 235 ~~~~~~~~~ 243 (261)
+.+......
T Consensus 356 ~~~~~~~~~ 364 (394)
T PRK11138 356 RFVAQQKVD 364 (394)
T ss_pred CEEEEEEcC
Confidence 987665543
No 314
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.71 E-value=3.8e-06 Score=72.75 Aligned_cols=231 Identities=11% Similarity=0.119 Sum_probs=125.2
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
|...|.++.|.-+ .+-++++...| .|...|+.+..+ .....-.+.|.+++|+||.+.++..+
T Consensus 67 gd~~i~s~~fl~d---~~~i~v~~~~G--------~iilvd~et~~~-------eivg~vd~GI~aaswS~Dee~l~liT 128 (1265)
T KOG1920|consen 67 GDDEIVSVQFLAD---TNSICVITALG--------DIILVDPETLEL-------EIVGNVDNGISAASWSPDEELLALIT 128 (1265)
T ss_pred CCcceEEEEEecc---cceEEEEecCC--------cEEEEcccccce-------eeeeeccCceEEEeecCCCcEEEEEe
Confidence 3456777777765 34555555566 666678877664 23333457899999999999999888
Q ss_pred cCCcEEEEEEeCCcc-ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEE
Q 024868 83 TNGGCKLFEVYGGAT-DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~ 161 (261)
..+++.+.+.. ... ..+.+ .......+..-.+-|-...+.+ -| ..|.....+....+........++.=..+.
T Consensus 129 ~~~tll~mT~~-f~~i~E~~L---~~d~~~~sk~v~VGwGrkeTqf-rg-s~gr~~~~~~~~~ek~~~~~~~~~~~~~Is 202 (1265)
T KOG1920|consen 129 GRQTLLFMTKD-FEPIAEKPL---DADDERKSKFVNVGWGRKETQF-RG-SEGRQAARQKIEKEKALEQIEQDDHKTSIS 202 (1265)
T ss_pred CCcEEEEEecc-ccchhcccc---ccccccccccceecccccceee-ec-chhhhcccccccccccccchhhccCCceEE
Confidence 88877665432 111 00000 0000111222223332221111 11 112222111111111011111223346799
Q ss_pred EcCCCCEEEEe-----cCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC--
Q 024868 162 FSLDSEFLATT-----STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-- 234 (261)
Q Consensus 162 ~s~~~~~l~~~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~-- 234 (261)
|--||+++|+. .....+++||-+ |..-. .......--.+++|-|.|..+ .++-....|+.|.+|....-
T Consensus 203 WRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns-~se~~~~l~~~LsWkPsgs~i--A~iq~~~sd~~IvffErNGL~h 278 (1265)
T KOG1920|consen 203 WRGDGEYFAVSFVESETGTRKIRVYDRE-GALNS-TSEPVEGLQHSLSWKPSGSLI--AAIQCKTSDSDIVFFERNGLRH 278 (1265)
T ss_pred EccCCcEEEEEEEeccCCceeEEEeccc-chhhc-ccCcccccccceeecCCCCeE--eeeeecCCCCcEEEEecCCccc
Confidence 99999999883 223789999976 44322 222222235679999999872 22333455668999985432
Q ss_pred -eEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 235 -NKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 235 -~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+..-.......++..++|+.++..||+
T Consensus 279 g~f~l~~p~de~~ve~L~Wns~sdiLAv 306 (1265)
T KOG1920|consen 279 GEFVLPFPLDEKEVEELAWNSNSDILAV 306 (1265)
T ss_pred cccccCCcccccchheeeecCCCCceee
Confidence 211112233345899999999999885
No 315
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.70 E-value=8.9e-07 Score=72.70 Aligned_cols=93 Identities=6% Similarity=-0.028 Sum_probs=62.4
Q ss_pred CeEEEEEccC----ceEEeeccccCCceeEEEEcCCCCEEEEec-CCCcEEEEEccCCcE------------EEEEeecC
Q 024868 134 GHLRIMHWPS----LRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVA------------WTFLTRNS 196 (261)
Q Consensus 134 ~~i~~~d~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~~------------~~~~~~~~ 196 (261)
+.|.+.|..+ +..+.....-......+.++|||+++++++ .+..+.|.|+.+.+. ..+....
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG- 374 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG- 374 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC-
Confidence 4577777766 222333333344668899999999988766 489999999987542 3333322
Q ss_pred CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868 197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (261)
Q Consensus 197 ~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~ 233 (261)
......+|.++|.. ..+-.-|.+|..||+.+
T Consensus 375 -lGPLHTaFDg~G~a-----ytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 375 -LGPLHTAFDGRGNA-----YTTLFLDSQIVKWNIEA 405 (635)
T ss_pred -CCcceEEECCCCCE-----EEeEeecceeEEEehHH
Confidence 23556789998874 23444577899999875
No 316
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.69 E-value=3.2e-05 Score=57.42 Aligned_cols=191 Identities=13% Similarity=0.146 Sum_probs=105.4
Q ss_pred eecCCCCCceEEEECCCCCeE-EEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeE
Q 024868 58 VFDESEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL 136 (261)
Q Consensus 58 ~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 136 (261)
.+++-...+..++|+|+.+.| ++....+.|..++.. ++. .+ ...+...+....+++.-++.++++.-.++.+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~v-lr-----~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L 88 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKV-LR-----RIPLDGFGDYEGITYLGNGRYVLSEERDQRL 88 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---E-EE-----EEE-SS-SSEEEEEE-STTEEEEEETTTTEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCE-EE-----EEeCCCCCCceeEEEECCCEEEEEEcCCCcE
Confidence 455666679999999986655 455556777666653 222 11 1123345667889998888887777678999
Q ss_pred EEEEccCce----E--Ee--e--cc-ccCCceeEEEEcCCCCEEEEecCCCcEEEEEccC---CcEEEEEee-------c
Q 024868 137 RIMHWPSLR----I--IL--D--EP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED---GVAWTFLTR-------N 195 (261)
Q Consensus 137 ~~~d~~~~~----~--~~--~--~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~-------~ 195 (261)
.++++.... . .. . .. .++..+..++|+|.++.|+.+-...-..+|.++. ...+..... .
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence 999883321 1 01 1 11 2334689999999877776666665666666653 222221110 1
Q ss_pred CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccC---------cCeeEEEEeeCCCEEe
Q 024868 196 SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR---------KPASVLSISLDGKYLA 260 (261)
Q Consensus 196 ~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~---------~~v~~~~~s~dg~~la 260 (261)
....+.+++++|....+ ++.+.....|..+| .+|+.+..+.... ...-.++|.++|+..+
T Consensus 169 ~~~d~S~l~~~p~t~~l----liLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHL----LILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp -SS---EEEEETTTTEE----EEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred eeccccceEEcCCCCeE----EEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 11247889999987764 35577888999999 5677766555433 2467899999998654
No 317
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.66 E-value=1.4e-06 Score=69.90 Aligned_cols=74 Identities=20% Similarity=0.307 Sum_probs=60.7
Q ss_pred CCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEc
Q 024868 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (261)
Q Consensus 62 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~ 141 (261)
....|.+.+++|+.+.++.|..||.|.+||...+.... ....-.+..++|+|+|..+++|+..|.+.+||+
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~---------~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL---------AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee---------eeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 45789999999999999999999999999997664211 111234578999999999999999999999998
Q ss_pred cCc
Q 024868 142 PSL 144 (261)
Q Consensus 142 ~~~ 144 (261)
.-.
T Consensus 329 ALs 331 (545)
T PF11768_consen 329 ALS 331 (545)
T ss_pred ecC
Confidence 643
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.66 E-value=4.3e-07 Score=76.21 Aligned_cols=140 Identities=16% Similarity=0.264 Sum_probs=103.6
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec---------CCcEEE
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT---------NGGCKL 89 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i 89 (261)
..++.+|...| +|..-|+.+-+. .+.+..|++.+.+++. .|+.|++++. |..|+|
T Consensus 187 nr~lf~G~t~G--------~V~LrD~~s~~~------iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkV 250 (1118)
T KOG1275|consen 187 NRNLFCGDTRG--------TVFLRDPNSFET------IHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKV 250 (1118)
T ss_pred CcEEEeecccc--------eEEeecCCcCce------eeeeeccccceeeeec--cCCeEEEeecccccccccccchhhh
Confidence 45788888888 899999888765 7789999999988766 6888988875 567899
Q ss_pred EEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC-CcEEEEeccCCeEEEEEc---cCceE-EeeccccCCceeEEEEcC
Q 024868 90 FEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHW---PSLRI-ILDEPKAHKSVLDMDFSL 164 (261)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~---~~~~~-~~~~~~~~~~v~~~~~s~ 164 (261)
||++..+. +.++.-.....-+.|.|. ...+++++..|...+-|. .+... ..........+..+++|+
T Consensus 251 YDLRmmra--------l~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSs 322 (1118)
T KOG1275|consen 251 YDLRMMRA--------LSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISS 322 (1118)
T ss_pred hhhhhhhc--------cCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecC
Confidence 99988764 333322222355778884 457788889999999883 32211 122222234599999999
Q ss_pred CCCEEEEecCCCcEEEEE
Q 024868 165 DSEFLATTSTDGSARIWK 182 (261)
Q Consensus 165 ~~~~l~~~~~d~~i~iwd 182 (261)
+++.++.+..+|.|.+|-
T Consensus 323 n~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 323 NGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCceEEEecccCcEeeec
Confidence 999999999999999997
No 319
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.66 E-value=1.5e-05 Score=63.82 Aligned_cols=145 Identities=10% Similarity=0.021 Sum_probs=87.4
Q ss_pred EEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccc
Q 024868 21 LVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN 100 (261)
Q Consensus 21 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 100 (261)
.+.+++.++ .++.+|..+++... ...+.. .....+.. ++..+++++.++.++.+|..+++...+
T Consensus 67 ~v~v~~~~g--------~v~a~d~~tG~~~W----~~~~~~--~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 130 (377)
T TIGR03300 67 KVYAADADG--------TVVALDAETGKRLW----RVDLDE--RLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWR 130 (377)
T ss_pred EEEEECCCC--------eEEEEEccCCcEee----eecCCC--CcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeee
Confidence 556666667 89999987776422 111221 11112222 466788888899999999988775332
Q ss_pred eeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCce-----eEEEEcCCCCEEEEecCC
Q 024868 101 LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV-----LDMDFSLDSEFLATTSTD 175 (261)
Q Consensus 101 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~d 175 (261)
... ...+.+...- .+..++.+..++.++.+|.++++.+.......... .+... .+..++.+..+
T Consensus 131 ~~~--------~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~ 199 (377)
T TIGR03300 131 AKL--------SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAG 199 (377)
T ss_pred ecc--------CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCC
Confidence 110 1111111111 24466677789999999999998876654332211 11112 13467778888
Q ss_pred CcEEEEEccCCcEEEEE
Q 024868 176 GSARIWKTEDGVAWTFL 192 (261)
Q Consensus 176 ~~i~iwd~~~~~~~~~~ 192 (261)
+.+..+|.++|+.+...
T Consensus 200 g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 200 GKLVALDLQTGQPLWEQ 216 (377)
T ss_pred CEEEEEEccCCCEeeee
Confidence 99999999999876543
No 320
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.66 E-value=8.7e-09 Score=82.82 Aligned_cols=207 Identities=14% Similarity=0.165 Sum_probs=128.1
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC-CCCeEEEEec-
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTT- 83 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~- 83 (261)
-+.|++|.-+.+ +-++++|..+| .|-.-......-. .....+++....++++|++ |.+.||+|-.
T Consensus 58 y~kcva~~y~~d-~cIlavG~atG--------~I~l~s~r~~hdS----s~E~tp~~ar~Ct~lAwneLDtn~LAagldk 124 (783)
T KOG1008|consen 58 YVKCVASFYGND-RCILAVGSATG--------NISLLSVRHPHDS----SAEVTPGYARPCTSLAWNELDTNHLAAGLDK 124 (783)
T ss_pred CceeehhhcCCc-hhhhhhccccC--------ceEEeecCCcccc----cceecccccccccccccccccHHHHHhhhhh
Confidence 367888866542 46788888877 4433322221110 1335677888999999998 6777877733
Q ss_pred ---CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEE
Q 024868 84 ---NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (261)
Q Consensus 84 ---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~ 160 (261)
|..+.|||+.+.-...+ ....... .......+++|-.+.+++++|...+.+.++|++..... ...-....+..+
T Consensus 125 hrnds~~~Iwdi~s~ltvPk-e~~~fs~-~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~-~~svnTk~vqG~ 201 (783)
T KOG1008|consen 125 HRNDSSLKIWDINSLLTVPK-ESPLFSS-STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS-VSSVNTKYVQGI 201 (783)
T ss_pred hcccCCccceecccccCCCc-ccccccc-ccccCccccccccCcchhhcccccchhhhhhhhhhhhh-hhhhhhhhcccc
Confidence 56799999987632000 0000111 11234457888888899999988989999998743221 111223357778
Q ss_pred EEcC-CCCEEEEecCCCcEEEEE-ccCC-cEEEEEeec---CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868 161 DFSL-DSEFLATTSTDGSARIWK-TEDG-VAWTFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (261)
Q Consensus 161 ~~s~-~~~~l~~~~~d~~i~iwd-~~~~-~~~~~~~~~---~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~ 232 (261)
..+| .+.++++-. |+.|.+|| .++- +++..+... ....+..++|+|...-+. +....+.++|++||+.
T Consensus 202 tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtgll---a~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 202 TVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLL---AVLSRDSITIRLYDIC 275 (783)
T ss_pred eecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchh---hhhccCcceEEEeccc
Confidence 8888 777887766 89999999 3322 222222111 112388899999765531 2334456789999986
No 321
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.65 E-value=8.6e-05 Score=57.09 Aligned_cols=214 Identities=15% Similarity=0.076 Sum_probs=119.5
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccc
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD 98 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~ 98 (261)
..++.+.-..+ +++.|++.++. ...+... +.+.++..-..+..|+++ ..| +.+++.+.+...
T Consensus 37 ~~L~w~DI~~~--------~i~r~~~~~g~-------~~~~~~p-~~~~~~~~~d~~g~Lv~~-~~g-~~~~~~~~~~~~ 98 (307)
T COG3386 37 GALLWVDILGG--------RIHRLDPETGK-------KRVFPSP-GGFSSGALIDAGGRLIAC-EHG-VRLLDPDTGGKI 98 (307)
T ss_pred CEEEEEeCCCC--------eEEEecCCcCc-------eEEEECC-CCcccceeecCCCeEEEE-ccc-cEEEeccCCcee
Confidence 44555655566 88889887654 2233322 334444443344445543 444 677777544321
Q ss_pred cceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-----------CCeEEEEEccCceEEeeccccCCceeEEEEcCCCC
Q 024868 99 INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----------DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE 167 (261)
Q Consensus 99 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 167 (261)
.... . ...-......+.....|+|++.+.... -|.++.+|. .+..+.....+-..-..++||||++
T Consensus 99 t~~~-~-~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~ 175 (307)
T COG3386 99 TLLA-E-PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGK 175 (307)
T ss_pred EEec-c-ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCC
Confidence 1111 1 111111256678889999987665433 133444443 3444333333344567899999998
Q ss_pred EEEEecC-CCcEEEEEccC--C----cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC-cEEEEEECCCCeEEee
Q 024868 168 FLATTST-DGSARIWKTED--G----VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-ALLAVYDISTWNKIGH 239 (261)
Q Consensus 168 ~l~~~~~-d~~i~iwd~~~--~----~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d-~~i~~~d~~~~~~~~~ 239 (261)
.++.+.. .+.|+-|++.. + +..........+..-.++...+|.+ + +.+..+ +.|.+|+.. |+++..
T Consensus 176 tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~l-w----~~a~~~g~~v~~~~pd-G~l~~~ 249 (307)
T COG3386 176 TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNL-W----VAAVWGGGRVVRFNPD-GKLLGE 249 (307)
T ss_pred EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCE-E----EecccCCceEEEECCC-CcEEEE
Confidence 7776654 47888887752 1 2112222122234567788888886 2 233333 389999998 888877
Q ss_pred eeccCcCeeEEEEe-eCCCEE
Q 024868 240 KRLLRKPASVLSIS-LDGKYL 259 (261)
Q Consensus 240 ~~~~~~~v~~~~~s-~dg~~l 259 (261)
+......+++++|- |+.+.|
T Consensus 250 i~lP~~~~t~~~FgG~~~~~L 270 (307)
T COG3386 250 IKLPVKRPTNPAFGGPDLNTL 270 (307)
T ss_pred EECCCCCCccceEeCCCcCEE
Confidence 77665666777775 334433
No 322
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=9.4e-07 Score=67.59 Aligned_cols=81 Identities=9% Similarity=0.061 Sum_probs=64.4
Q ss_pred eecCCCCCceEEEECCCCC-eEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCCe
Q 024868 58 VFDESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGH 135 (261)
Q Consensus 58 ~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~ 135 (261)
.+..|...|..++|+|..+ .+..++.+.+|+|.|+++... .........+.+++|.-|. ++|..|...|.
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~--------vssy~a~~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV--------VSSYIAYNQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEeccccee--------eeheeccCCceeeeeccCCcceeEEeccCce
Confidence 5677788899999999776 677888999999999998764 2223334789999999865 56777778999
Q ss_pred EEEEEccCceE
Q 024868 136 LRIMHWPSLRI 146 (261)
Q Consensus 136 i~~~d~~~~~~ 146 (261)
|.+||++..+.
T Consensus 260 VlvyD~R~~~~ 270 (463)
T KOG1645|consen 260 VLVYDMRQPEG 270 (463)
T ss_pred EEEEEccCCCc
Confidence 99999986553
No 323
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.64 E-value=5.6e-07 Score=75.55 Aligned_cols=170 Identities=13% Similarity=0.089 Sum_probs=117.7
Q ss_pred CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC
Q 024868 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH 154 (261)
Q Consensus 75 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 154 (261)
+..++.|+-...+..+|+.+.+.... .... .+.+.-+ -.+++.+.+|...|+|.+-|.++.+.+..+..|.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~------~~v~-a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs 217 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRT------TNVS-ASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS 217 (1118)
T ss_pred Ccceeecchhhheeeeecccceeeee------eecc-CCceEEE--EecCcEEEeecccceEEeecCCcCceeeeeeccc
Confidence 44566666777788888887653111 0111 1224433 3468999999999999999999999999999998
Q ss_pred CceeEEEEcCCCCEEEEecC---------CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcE
Q 024868 155 KSVLDMDFSLDSEFLATTST---------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225 (261)
Q Consensus 155 ~~v~~~~~s~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~ 225 (261)
+.+.++.. .|+.|++++. |.-|+|||+++.+.+.-+..+.+ ..-+.|+|.=... ++..+..|.
T Consensus 218 ~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~--P~flrf~Psl~t~----~~V~S~sGq 289 (1118)
T KOG1275|consen 218 GSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG--PQFLRFHPSLTTR----LAVTSQSGQ 289 (1118)
T ss_pred cceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC--chhhhhcccccce----EEEEecccc
Confidence 88877665 5889998876 44689999998887666554443 3456788865432 466667788
Q ss_pred EEEEECC---CCe-EEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 226 LAVYDIS---TWN-KIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 226 i~~~d~~---~~~-~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
..+-|.. +.. .+......+..+..+.+|++|+.||+
T Consensus 290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alaf 329 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAF 329 (1118)
T ss_pred eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEE
Confidence 8888833 221 12233344456899999999999884
No 324
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=3.5e-08 Score=82.48 Aligned_cols=182 Identities=14% Similarity=0.113 Sum_probs=127.7
Q ss_pred eeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC--
Q 024868 57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-- 134 (261)
Q Consensus 57 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-- 134 (261)
..+..|+...+|++|+-+.+.|+.|+..|.|++|++.++.. +...-.|..+++-+.=+.||..+++.+.-.
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-------e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-------EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc-------cccccccccccccccccCCcceeeeeccccCc
Confidence 35667888899999999999999999999999999999875 233344667888888888998877765333
Q ss_pred eEEEEEccCc-eEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecC---CCceEEEEEecCCC
Q 024868 135 HLRIMHWPSL-RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS---DEKIELCRFSKDGT 210 (261)
Q Consensus 135 ~i~~~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~p~~~ 210 (261)
-..+|++..- ..... ...-.++.|+..-+.-+.|+......+||++++.++.++.... ...-+.+.|+|+.+
T Consensus 1168 lsaLW~~~s~~~~~Hs----f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHS----FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred hHHHhccccccCcccc----ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc
Confidence 4678987541 11111 1245678898766655666666789999999998776643221 11235678999999
Q ss_pred cceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 211 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
. ++ +|| .+||++..+.+..+.... .-..-.|+|.|.-++
T Consensus 1244 L-----Il---ndG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVI 1282 (1516)
T KOG1832|consen 1244 L-----IL---NDG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVI 1282 (1516)
T ss_pred e-----Ee---eCc--eeeeeccHHHHhhhhhhe-ecccccccCCCceEE
Confidence 7 23 455 489999887765554333 223446888887665
No 325
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=1.4e-05 Score=66.41 Aligned_cols=205 Identities=13% Similarity=0.079 Sum_probs=140.0
Q ss_pred CceeeEEEEEeeCCc---------ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC-
Q 024868 4 GGTVTCGSWIKRPEN---------VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP- 73 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~---------~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 73 (261)
+..|+.+.|.|.|.. ..++|++.-.| +|..+|...... ...+..|.+++..+.|-+
T Consensus 55 ~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G--------rIil~d~~~~s~------~~~l~~~~~~~qdl~W~~~ 120 (1062)
T KOG1912|consen 55 QSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG--------RIILVDFVLASV------INWLSHSNDSVQDLCWVPA 120 (1062)
T ss_pred ccceeEEEeccCCCchhccCccccceeEEeccccC--------cEEEEEehhhhh------hhhhcCCCcchhheeeeec
Confidence 567999999886632 34566777777 888888766554 456778888999999965
Q ss_pred --CC-CeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccC------
Q 024868 74 --SG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPS------ 143 (261)
Q Consensus 74 --~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~------ 143 (261)
+. ..|++......+.+|+..+++...+ ....+....|+.+.| |.+.+...+..|.+.+-+.-.
T Consensus 121 rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk-------~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~ 193 (1062)
T KOG1912|consen 121 RDDSRDVLLAIHGSSTLVLWNTDTGEKFWK-------YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDV 193 (1062)
T ss_pred cCcchheeEEecCCcEEEEEEccCCceeec-------cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCC
Confidence 34 4667777788999999998875222 112245667789999 777777777778777665421
Q ss_pred -ceEEeeccccCC-------------------c------eeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC
Q 024868 144 -LRIILDEPKAHK-------------------S------VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD 197 (261)
Q Consensus 144 -~~~~~~~~~~~~-------------------~------v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 197 (261)
++..+....|.+ . .-.++|+|.-+.++.......+.++|++-..++.+.....+
T Consensus 194 pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~ 273 (1062)
T KOG1912|consen 194 PGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERG 273 (1062)
T ss_pred CceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccC
Confidence 111111111100 0 12356788766666666778899999998888887776555
Q ss_pred CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868 198 EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (261)
Q Consensus 198 ~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~ 233 (261)
+ +.-+.|-|+++.-++ +....||.+.+|-.+.
T Consensus 274 ~-akfv~vlP~~~rd~L---fclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 274 G-AKFVDVLPDPRRDAL---FCLHSNGRLTIRVRKE 305 (1062)
T ss_pred C-cceeEeccCCCcceE---EEEecCCeEEEEEeec
Confidence 3 667888999887654 5556789999998764
No 326
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.58 E-value=5.9e-05 Score=59.79 Aligned_cols=144 Identities=17% Similarity=0.122 Sum_probs=79.7
Q ss_pred CCCeEEEEEeeCCcEEEEec--cC---CeEEEEEccCceEEeecccc-CC---ceeEEEEc-CCCC-EEEEecCCCc--E
Q 024868 112 AGPQKCLSFSVDGSRFAAGG--VD---GHLRIMHWPSLRIILDEPKA-HK---SVLDMDFS-LDSE-FLATTSTDGS--A 178 (261)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~~--~d---~~i~~~d~~~~~~~~~~~~~-~~---~v~~~~~s-~~~~-~l~~~~~d~~--i 178 (261)
...+..+.|.++++.|+..- .+ ..+.++|..++......... .. .-....|. +++. ++.....+|. |
T Consensus 183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl 262 (353)
T PF00930_consen 183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL 262 (353)
T ss_dssp SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence 34578899999998444432 22 24677787765543222211 12 22355554 6555 4444556664 5
Q ss_pred EEEEccCCcEEEEEeecCCCceE-EEEEecCCCcceEEEEEee--CCCcEEEEEECC-CCeEEeeeeccCcCeeEEEEee
Q 024868 179 RIWKTEDGVAWTFLTRNSDEKIE-LCRFSKDGTKPFLFCTVQR--GDKALLAVYDIS-TWNKIGHKRLLRKPASVLSISL 254 (261)
Q Consensus 179 ~iwd~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~~~~~~~~~--~~d~~i~~~d~~-~~~~~~~~~~~~~~v~~~~~s~ 254 (261)
.+++...+.. +.+....- .|. -+.|+++++.+|. .+.. .....|+.-++. .++.. .+......-..+.|||
T Consensus 263 y~~~~~~~~~-~~lT~G~~-~V~~i~~~d~~~~~iyf--~a~~~~p~~r~lY~v~~~~~~~~~-~LT~~~~~~~~~~~Sp 337 (353)
T PF00930_consen 263 YLYDLDGGKP-RQLTSGDW-EVTSILGWDEDNNRIYF--TANGDNPGERHLYRVSLDSGGEPK-CLTCEDGDHYSASFSP 337 (353)
T ss_dssp EEEETTSSEE-EESS-SSS--EEEEEEEECTSSEEEE--EESSGGTTSBEEEEEETTETTEEE-ESSTTSSTTEEEEE-T
T ss_pred EEEcccccce-eccccCce-eecccceEcCCCCEEEE--EecCCCCCceEEEEEEeCCCCCeE-eccCCCCCceEEEECC
Confidence 5556655553 34443332 364 4778899887542 2333 234567777777 55543 3443333336999999
Q ss_pred CCCEEe
Q 024868 255 DGKYLA 260 (261)
Q Consensus 255 dg~~la 260 (261)
||++++
T Consensus 338 dg~y~v 343 (353)
T PF00930_consen 338 DGKYYV 343 (353)
T ss_dssp TSSEEE
T ss_pred CCCEEE
Confidence 999986
No 327
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.55 E-value=9.9e-05 Score=55.02 Aligned_cols=148 Identities=17% Similarity=0.181 Sum_probs=91.3
Q ss_pred CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeec-cc
Q 024868 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE-PK 152 (261)
Q Consensus 74 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~ 152 (261)
++..+++++.++.|+.||..+++....... .+.+.... ..++..++++..++.++.+|..+++.+... ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--------~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~ 105 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL--------PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLT 105 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC--------SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec--------ccccccee-eecccccccccceeeeEecccCCcceeeeeccc
Confidence 566777778899999999988875333221 01111111 223445566667889999999999988773 32
Q ss_pred cCC---ceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCc---------e-EEEEEecCCCcceEEEEEe
Q 024868 153 AHK---SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK---------I-ELCRFSKDGTKPFLFCTVQ 219 (261)
Q Consensus 153 ~~~---~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------v-~~~~~~p~~~~~~~~~~~~ 219 (261)
... .........++..++.+..++.+..+|.++|+.+.......... . ..+.+ .++ . +..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~-----v~~ 178 (238)
T PF13360_consen 106 SSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI-SDG-R-----VYV 178 (238)
T ss_dssp SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC-CTT-E-----EEE
T ss_pred cccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE-ECC-E-----EEE
Confidence 211 12223333347788888889999999999999988876533210 1 22222 244 4 355
Q ss_pred eCCCcE-EEEEECCCCeEEe
Q 024868 220 RGDKAL-LAVYDISTWNKIG 238 (261)
Q Consensus 220 ~~~d~~-i~~~d~~~~~~~~ 238 (261)
+..++. +.+ |+++++.+.
T Consensus 179 ~~~~g~~~~~-d~~tg~~~w 197 (238)
T PF13360_consen 179 SSGDGRVVAV-DLATGEKLW 197 (238)
T ss_dssp ECCTSSEEEE-ETTTTEEEE
T ss_pred EcCCCeEEEE-ECCCCCEEE
Confidence 555664 555 999998663
No 328
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.55 E-value=9.4e-05 Score=57.73 Aligned_cols=221 Identities=13% Similarity=0.116 Sum_probs=109.9
Q ss_pred cceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCcc
Q 024868 18 NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT 97 (261)
Q Consensus 18 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~ 97 (261)
+..++..+..++.. +++..|..+.+. .+...+.........++|+.+.++.......|+..|+.+.+.
T Consensus 47 G~kllF~s~~dg~~------nly~lDL~t~~i------~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 47 GRKLLFASDFDGNR------NLYLLDLATGEI------TQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp S-EEEEEE-TTSS-------EEEEEETTT-EE------EE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E
T ss_pred CCEEEEEeccCCCc------ceEEEEcccCEE------EECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE
Confidence 35666666656655 899999999874 333332223344566788888887665666788888877653
Q ss_pred ccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEec---c-------------------CCeEEEEEccCceEEeecccc
Q 024868 98 DINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGG---V-------------------DGHLRIMHWPSLRIILDEPKA 153 (261)
Q Consensus 98 ~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~---~-------------------d~~i~~~d~~~~~~~~~~~~~ 153 (261)
. .+.. . ....+-...|.. |++.++..- . ...|.-.|+.+++. ..+...
T Consensus 115 ~-~vy~-----~-p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~-~~v~~~ 186 (386)
T PF14583_consen 115 R-VVYE-----V-PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER-KVVFED 186 (386)
T ss_dssp E-EEEE--------TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E-EEEEEE
T ss_pred E-EEEE-----C-CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce-eEEEec
Confidence 1 1111 1 122333355543 566554321 1 12355667777765 334445
Q ss_pred CCceeEEEEcC-CCCEEEEecC---CC-cEEEEEccC-CcEEEEEeecC-CCceEEEEEecCCCcceEEEEEeeCCCcEE
Q 024868 154 HKSVLDMDFSL-DSEFLATTST---DG-SARIWKTED-GVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALL 226 (261)
Q Consensus 154 ~~~v~~~~~s~-~~~~l~~~~~---d~-~i~iwd~~~-~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i 226 (261)
...+..+.|+| |...|+.|-. +. .-+||-+++ +...+.+..+. ...+..=-|.|||..++......++.+..|
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i 266 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWI 266 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEE
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEE
Confidence 55788899999 4556666543 22 135666553 33333332222 224556679999998544333355667789
Q ss_pred EEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 227 AVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 227 ~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
.-+|..+++....... .....+--++||+++|
T Consensus 267 ~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~v 298 (386)
T PF14583_consen 267 AGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFV 298 (386)
T ss_dssp EEE-TTT--EEEEEEE---SEEEEEE-TTSSEEE
T ss_pred EeeCCCCCCceEEEeC--CceeeeEEcCCCCEEE
Confidence 9999998875432221 2344566678888875
No 329
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.54 E-value=9.4e-07 Score=72.72 Aligned_cols=182 Identities=9% Similarity=0.093 Sum_probs=119.8
Q ss_pred CceEEEECCC--CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCCeEEEEEc
Q 024868 65 DPMTIAVNPS--GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHW 141 (261)
Q Consensus 65 ~v~~~~~~~~--~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~ 141 (261)
.|..+.|+|. -.+-++......-.+|++....... -+.....|...++++.|+|+. ..+++++.|..+..||+
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~a----Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~ 144 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNA----IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDM 144 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccc----eEEEEecCccceeccccCCCCCcceeeccccccceeeec
Confidence 4677888774 3344555556667889986543211 113334566889999999954 57888999999999999
Q ss_pred cCceE-EeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCC-cEEEEEeecCCCceEEEEEecCCCcceEEEEEe
Q 024868 142 PSLRI-ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (261)
Q Consensus 142 ~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 219 (261)
++... +.....-+.....+.|+.....+.+.+..+.|.+||++.| .++..++++.. .++.++|+.--... +.+
T Consensus 145 rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs-~vn~~~fnr~~~s~----~~s 219 (1081)
T KOG0309|consen 145 RSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVS-SVNSIDFNRFKYSE----IMS 219 (1081)
T ss_pred cCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccce-eeehHHHhhhhhhh----hcc
Confidence 87653 3344444556788999885555555567788999999865 46667776544 57788776532221 478
Q ss_pred eCCCcEEEEEECCCCeEE-eeeeccCcCeeEEEEeeC
Q 024868 220 RGDKALLAVYDISTWNKI-GHKRLLRKPASVLSISLD 255 (261)
Q Consensus 220 ~~~d~~i~~~d~~~~~~~-~~~~~~~~~v~~~~~s~d 255 (261)
.+.|++|+.||....... .....-..++....+-|=
T Consensus 220 ~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pf 256 (1081)
T KOG0309|consen 220 SSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPF 256 (1081)
T ss_pred cCCCCceeeecccccccccceeccccCcceecccccc
Confidence 899999999998754332 122223345555555553
No 330
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.54 E-value=3.5e-06 Score=68.97 Aligned_cols=151 Identities=14% Similarity=0.182 Sum_probs=98.1
Q ss_pred cceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCcc
Q 024868 18 NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT 97 (261)
Q Consensus 18 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~ 97 (261)
...+++.|.+.| .+|.|+..++... .....+..+.+.....+++..++|.|+..|.|.++.+.....
T Consensus 44 t~~~l~~GsS~G--------~lyl~~R~~~~~~-----~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 44 TEEYLAMGSSAG--------SVYLYNRHTGEMR-----KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CCceEEEecccc--------eEEEEecCchhhh-----cccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 356899999999 8999998877641 112222445566777899888899999999999999887543
Q ss_pred ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCce----EEeeccccCCceeEEEEcCCCCEEEEec
Q 024868 98 DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR----IILDEPKAHKSVLDMDFSLDSEFLATTS 173 (261)
Q Consensus 98 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 173 (261)
....... .....|...|++++|++++..+++|...|+|.+-.+.+.. ..+.+....+.|-.++.. ++.+|++..
T Consensus 111 ~~~~~~t-~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl 188 (726)
T KOG3621|consen 111 RDLDYVT-PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTL 188 (726)
T ss_pred Ccceeec-cccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhh
Confidence 2222211 1122357899999999999999999999999988776621 111222233455555544 344444443
Q ss_pred CCCcEEEEEccC
Q 024868 174 TDGSARIWKTED 185 (261)
Q Consensus 174 ~d~~i~iwd~~~ 185 (261)
.. ..+++++.
T Consensus 189 ~r--~~Lc~tE~ 198 (726)
T KOG3621|consen 189 TR--CILCQTEA 198 (726)
T ss_pred hh--hheeecch
Confidence 32 34555543
No 331
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=0.00023 Score=56.99 Aligned_cols=178 Identities=12% Similarity=0.114 Sum_probs=117.1
Q ss_pred CceEEEECCCCCeEEEEec---CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cCCeEEEEE
Q 024868 65 DPMTIAVNPSGDDFVCSTT---NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMH 140 (261)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d 140 (261)
....++++|+++.+..+.. ++++.+.|-.+...... ......+ ..++++|+|..++... .++.+.+.|
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-------~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~ 188 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-------IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVID 188 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-------EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEe
Confidence 6778999999988877665 56777777766654221 1111123 7899999999777765 688999999
Q ss_pred ccCceEEe-e---ccccCCceeEEEEcCCCCEEEEecCC---CcEEEEEccCCcEEEE-EeecCCCceEEEEEecCCCcc
Q 024868 141 WPSLRIIL-D---EPKAHKSVLDMDFSLDSEFLATTSTD---GSARIWKTEDGVAWTF-LTRNSDEKIELCRFSKDGTKP 212 (261)
Q Consensus 141 ~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~ 212 (261)
........ . ..........+.++|+|++++..... +.+...|..++..... ...... ....+..+|+|+..
T Consensus 189 ~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~ 267 (381)
T COG3391 189 TSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAA 267 (381)
T ss_pred CCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEE
Confidence 76555432 1 11222345789999999977765543 5899999988877665 332232 35678899999984
Q ss_pred eEEEEEeeCCCcEEEEEECCCCeEEeeeeccC---cCeeEEEEeeC
Q 024868 213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLR---KPASVLSISLD 255 (261)
Q Consensus 213 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~---~~v~~~~~s~d 255 (261)
+ +.-...+.+.+-|..+........... ..+..+++.+.
T Consensus 268 y----v~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 268 Y----VANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred E----EEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 3 222346789999998877665444332 23455555553
No 332
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=3.6e-06 Score=65.44 Aligned_cols=196 Identities=13% Similarity=0.069 Sum_probs=128.2
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec-CCcEEEEEEeCCcc
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGAT 97 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~~~ 97 (261)
..++..++-++ .+..|.+..... ......+..|-..+.+++.+-++..+.+.+. |..++++|+.+...
T Consensus 20 a~fiiqASlDG--------h~KFWkKs~isG---vEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dm 88 (558)
T KOG0882|consen 20 AKFIIQASLDG--------HKKFWKKSRISG---VEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDM 88 (558)
T ss_pred hheEEeeecch--------hhhhcCCCCccc---eeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccch
Confidence 45677787788 566665544111 0113346677888999999999998888777 99999999987654
Q ss_pred ccceeeeeCCCCCCCCCeEEEEEee-CC---cEEEEe-ccCCeEEEEEccCce--EEeeccccCCceeEEEEcCCCCEEE
Q 024868 98 DINLLAKKMPPLQDAGPQKCLSFSV-DG---SRFAAG-GVDGHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLDSEFLA 170 (261)
Q Consensus 98 ~~~~~~~~~~~~~~~~~v~~~~~s~-~~---~~l~~~-~~d~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~ 170 (261)
...+- ...+ ...+.|.. .| ..|+++ -.++.+.++|-.... ......-|..+|..+.++|-+..++
T Consensus 89 inmiK---L~~l-----Pg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v 160 (558)
T KOG0882|consen 89 INMIK---LVDL-----PGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV 160 (558)
T ss_pred hhhcc---cccC-----CCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccccee
Confidence 21100 1111 11223322 22 134443 367899999965433 2222334557999999999999999
Q ss_pred EecCCCcEEEEEccC------CcEEEEEee--------cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868 171 TTSTDGSARIWKTED------GVAWTFLTR--------NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (261)
Q Consensus 171 ~~~~d~~i~iwd~~~------~~~~~~~~~--------~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~ 236 (261)
+....|.|.-|.... .+....++. .......++.|+|+|.. +.+-+.|..|++++.++++.
T Consensus 161 SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q-----istl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 161 SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ-----ISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc-----ccccCcccEEEEEEeccchh
Confidence 998899999998762 111111111 11224678999999998 57778999999999998876
Q ss_pred Ee
Q 024868 237 IG 238 (261)
Q Consensus 237 ~~ 238 (261)
++
T Consensus 236 vq 237 (558)
T KOG0882|consen 236 VQ 237 (558)
T ss_pred hh
Confidence 53
No 333
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.43 E-value=7.4e-05 Score=65.21 Aligned_cols=197 Identities=18% Similarity=0.203 Sum_probs=113.8
Q ss_pred CCCCCceEEEECCCCCeEEEEecCC--cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEE
Q 024868 61 ESEGDPMTIAVNPSGDDFVCSTTNG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI 138 (261)
Q Consensus 61 ~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~ 138 (261)
.|.+...+...+|.-..++++...+ .+..+.+..... ..+.......-.+...|.++.|-.+...++.+...|.|.+
T Consensus 16 ~~~~~~~~f~l~~~~~~~ass~~~~~~~~~~~ei~~~~k-v~~~~~s~~~~~gd~~i~s~~fl~d~~~i~v~~~~G~iil 94 (1265)
T KOG1920|consen 16 AGPGNAQAFILSPELVTVASSTINELLGLKIFEIESVGK-VRLVAESFLPEDGDDEIVSVQFLADTNSICVITALGDIIL 94 (1265)
T ss_pred CCCCchhheeeccccceeeeceeeecccccceeeecccc-ccceeecccCcCCCcceEEEEEecccceEEEEecCCcEEE
Confidence 3444445555566554555542221 133444433221 1111112222234568999999999999999999999999
Q ss_pred EEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEcc----C-------------------CcEEEEEeec
Q 024868 139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE----D-------------------GVAWTFLTRN 195 (261)
Q Consensus 139 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~----~-------------------~~~~~~~~~~ 195 (261)
-|..+.... ..-.-...|.+++||||++.++..+...++.+-+-. . |+....+.+.
T Consensus 95 vd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs 173 (1265)
T KOG1920|consen 95 VDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGS 173 (1265)
T ss_pred Eccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecc
Confidence 987766542 223334589999999999999988877766654320 0 1111111110
Q ss_pred C--------------------CCceEEEEEecCCCcceEEEEEeeCCC-cEEEEEECCCCeEEeeeeccCcCeeEEEEee
Q 024868 196 S--------------------DEKIELCRFSKDGTKPFLFCTVQRGDK-ALLAVYDISTWNKIGHKRLLRKPASVLSISL 254 (261)
Q Consensus 196 ~--------------------~~~v~~~~~~p~~~~~~~~~~~~~~~d-~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~ 254 (261)
. ...-..+.|--||++ |.+..+....+ ..|++||.+ |..-..-....+--.+++|-|
T Consensus 174 ~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~-fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP 251 (1265)
T KOG1920|consen 174 EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEY-FAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP 251 (1265)
T ss_pred hhhhcccccccccccccchhhccCCceEEEccCCcE-EEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC
Confidence 0 011235899999998 33333333444 899999987 433211112223346789999
Q ss_pred CCCEEeC
Q 024868 255 DGKYLAM 261 (261)
Q Consensus 255 dg~~la~ 261 (261)
.|..+|+
T Consensus 252 sgs~iA~ 258 (1265)
T KOG1920|consen 252 SGSLIAA 258 (1265)
T ss_pred CCCeEee
Confidence 9888874
No 334
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=6.6e-06 Score=69.07 Aligned_cols=71 Identities=13% Similarity=0.069 Sum_probs=53.5
Q ss_pred eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCc
Q 024868 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (261)
Q Consensus 7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 86 (261)
+++++|+|. ..+++.|-.-| .+..|...+.+. ......|+.+|..+.|||+|..|+++..-|.
T Consensus 62 atSLCWHpe---~~vLa~gwe~g--------~~~v~~~~~~e~------htv~~th~a~i~~l~wS~~G~~l~t~d~~g~ 124 (1416)
T KOG3617|consen 62 ATSLCWHPE---EFVLAQGWEMG--------VSDVQKTNTTET------HTVVETHPAPIQGLDWSHDGTVLMTLDNPGS 124 (1416)
T ss_pred hhhhccChH---HHHHhhccccc--------eeEEEecCCcee------eeeccCCCCCceeEEecCCCCeEEEcCCCce
Confidence 456778774 55666666666 666666665553 3344568899999999999999999999999
Q ss_pred EEEEEEeC
Q 024868 87 CKLFEVYG 94 (261)
Q Consensus 87 i~i~~~~~ 94 (261)
+.+|...-
T Consensus 125 v~lwr~d~ 132 (1416)
T KOG3617|consen 125 VHLWRYDV 132 (1416)
T ss_pred eEEEEeee
Confidence 99998873
No 335
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.41 E-value=9.9e-06 Score=65.36 Aligned_cols=170 Identities=12% Similarity=0.110 Sum_probs=89.8
Q ss_pred eecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEE
Q 024868 58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR 137 (261)
Q Consensus 58 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 137 (261)
.+....-.+..+.++|+|+++++ ..+|...++.....+. ...+......|.+.++ +|+-...++|.
T Consensus 27 ~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~------------k~~G~g~~~vw~~~n~-yAv~~~~~~I~ 92 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN------------KAFGSGLSFVWSSRNR-YAVLESSSTIK 92 (443)
T ss_dssp EEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEE------------EEEEE-SEEEE-TSSE-EEEE-TTS-EE
T ss_pred cCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcc------------cccCceeEEEEecCcc-EEEEECCCeEE
Confidence 34444556889999999999888 4677788887322221 0123446688998665 55555688899
Q ss_pred EEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEE
Q 024868 138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT 217 (261)
Q Consensus 138 ~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~ 217 (261)
++.--+.+....+. ....+..+-. |.+|...+.+ .|.+||..+++.++++... +|..+.|+++|++ +
T Consensus 93 I~kn~~~~~~k~i~-~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~-----v 159 (443)
T PF04053_consen 93 IYKNFKNEVVKSIK-LPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS---AVKYVIWSDDGEL-----V 159 (443)
T ss_dssp EEETTEE-TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSE-----E
T ss_pred EEEcCccccceEEc-CCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC---CCcEEEEECCCCE-----E
Confidence 96322222111121 1122333422 8878777654 8999999999999988732 3899999999998 3
Q ss_pred EeeCCCcEEEEEECCCC-----------eEEeeeeccCcCeeEEEEeeC
Q 024868 218 VQRGDKALLAVYDISTW-----------NKIGHKRLLRKPASVLSISLD 255 (261)
Q Consensus 218 ~~~~~d~~i~~~d~~~~-----------~~~~~~~~~~~~v~~~~~s~d 255 (261)
+..+.+ .+.+++.... ..+.........|.+..|..|
T Consensus 160 al~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 160 ALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED 207 (443)
T ss_dssp EEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred EEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence 444443 5777765432 022223322456777777765
No 336
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.40 E-value=0.0001 Score=61.94 Aligned_cols=153 Identities=13% Similarity=0.109 Sum_probs=87.6
Q ss_pred CCceEEEECCCCCeEEEEe------cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC----
Q 024868 64 GDPMTIAVNPSGDDFVCST------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---- 133 (261)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~------~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---- 133 (261)
..+...+++|+|+.++... .|..-.+|-...+.....+ .. ........|+|||+.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l-------t~-g~~~t~PsWspDG~~lw~v~dg~~~~ 421 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV-------LE-GHSLTRPSWSLDADAVWVVVDGNTVV 421 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee-------ec-CCCCCCceECCCCCceEEEecCcceE
Confidence 4678999999999987765 2443444544322221111 11 1236778999998877776422
Q ss_pred --------CeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEE---EEccCCcE-E---EEEeecCCC
Q 024868 134 --------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI---WKTEDGVA-W---TFLTRNSDE 198 (261)
Q Consensus 134 --------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i---wd~~~~~~-~---~~~~~~~~~ 198 (261)
+.+.+.+++.++... ...+.|..+.|||||..++... +++|++ -....|+. + ..+......
T Consensus 422 ~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~ 497 (591)
T PRK13616 422 RVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGD 497 (591)
T ss_pred EEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCC
Confidence 233333443333211 2345799999999999888765 477776 44344541 1 112222232
Q ss_pred ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868 199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (261)
Q Consensus 199 ~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~ 232 (261)
.+.++.|.+++.. + +...+.+..++..++.
T Consensus 498 ~~~~l~W~~~~~L-~---V~~~~~~~~v~~v~vD 527 (591)
T PRK13616 498 TAVSLDWRTGDSL-V---VGRSDPEHPVWYVNLD 527 (591)
T ss_pred ccccceEecCCEE-E---EEecCCCCceEEEecC
Confidence 3578999999985 2 2233344445555555
No 337
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.38 E-value=6.3e-05 Score=62.25 Aligned_cols=132 Identities=9% Similarity=0.082 Sum_probs=84.8
Q ss_pred EEeeCCcEEEEec-cCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC-----------------------
Q 024868 119 SFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST----------------------- 174 (261)
Q Consensus 119 ~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------------------- 174 (261)
-++|||+.+...+ ..+.+.+.|..+.+...++.-.. ....++++|+|+++++.+.
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn 277 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN 277 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence 3455666553332 34567778887776655544322 4466788888888877651
Q ss_pred -----------------CCcEEEEEccC-----CcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868 175 -----------------DGSARIWKTED-----GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (261)
Q Consensus 175 -----------------d~~i~iwd~~~-----~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~ 232 (261)
++.|.+.|.++ .+.+..+... ...+.+.++|||+++ .+++..+.++.++|+.
T Consensus 278 i~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVG--KsPHGV~vSPDGkyl----yVanklS~tVSVIDv~ 351 (635)
T PRK02888 278 IARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVP--KNPHGVNTSPDGKYF----IANGKLSPTVTVIDVR 351 (635)
T ss_pred hHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECC--CCccceEECCCCCEE----EEeCCCCCcEEEEECh
Confidence 24477777776 3444444433 247899999999984 4677789999999998
Q ss_pred CCeE------------EeeeeccCcCeeEEEEeeCCCE
Q 024868 233 TWNK------------IGHKRLLRKPASVLSISLDGKY 258 (261)
Q Consensus 233 ~~~~------------~~~~~~~~~~v~~~~~s~dg~~ 258 (261)
+.+. ..+... +......+|+++|+.
T Consensus 352 k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~a 388 (635)
T PRK02888 352 KLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNA 388 (635)
T ss_pred hhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCE
Confidence 7553 222222 334456788888763
No 338
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2.9e-06 Score=68.60 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=76.1
Q ss_pred CCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCcee-EEEEcCCCCEEEEecCCCcEEEEEccCCcEEEE
Q 024868 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL-DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF 191 (261)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 191 (261)
..+.-+.|+|.-.+||.+..+|.+.+..+. .+.++.+..+...+. +++|.|||+.||.|-.||+|++.|..++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 457789999999999999999999999887 667777776666666 999999999999999999999999999887776
Q ss_pred EeecCCCceEEEEEe
Q 024868 192 LTRNSDEKIELCRFS 206 (261)
Q Consensus 192 ~~~~~~~~v~~~~~~ 206 (261)
.......+|..+-|+
T Consensus 100 ~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 100 FLFSVETDISKGIWD 114 (665)
T ss_pred cccccccchheeecc
Confidence 332233346777775
No 339
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=5.1e-05 Score=59.32 Aligned_cols=146 Identities=14% Similarity=0.128 Sum_probs=100.2
Q ss_pred ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC------ceEE--------
Q 024868 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS------LRII-------- 147 (261)
Q Consensus 82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~------~~~~-------- 147 (261)
-.++.+.++|-....++... ..--|..+|..+.++|-+..+++....|.|.-|.... .+..
T Consensus 119 ~~sg~i~VvD~~~d~~q~~~-----fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTd 193 (558)
T KOG0882|consen 119 FKSGKIFVVDGFGDFCQDGY-----FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETD 193 (558)
T ss_pred ccCCCcEEECCcCCcCccce-----ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccch
Confidence 34688999998766542221 1112568999999999999999998899999998752 1111
Q ss_pred -eeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee--------------------------------
Q 024868 148 -LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-------------------------------- 194 (261)
Q Consensus 148 -~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------------------------------- 194 (261)
..+........++.|+|+|..+.+-+.|..|+++++++|+.++.+..
T Consensus 194 Ly~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek 273 (558)
T KOG0882|consen 194 LYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEK 273 (558)
T ss_pred hhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhh
Confidence 11223344578999999999999999999999999998876554421
Q ss_pred cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEe
Q 024868 195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG 238 (261)
Q Consensus 195 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~ 238 (261)
+....-..+.|...|+++ +-+.-=| |++.++.+++..+
T Consensus 274 ~~~~~~~~~~fdes~~fl-----ly~t~~g-ikvin~~tn~v~r 311 (558)
T KOG0882|consen 274 HGSTVGTNAVFDESGNFL-----LYGTILG-IKVINLDTNTVVR 311 (558)
T ss_pred hcCcccceeEEcCCCCEE-----Eeeccee-EEEEEeecCeEEE
Confidence 111123456788888872 3333333 7888888777653
No 340
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.28 E-value=0.00065 Score=49.76 Aligned_cols=140 Identities=17% Similarity=0.173 Sum_probs=92.1
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccc
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD 98 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~ 98 (261)
..+++.|+..+ .+...|+.++++..+... ..++.+-+.- -|++++.|...|.+++.+.+++...
T Consensus 23 kT~v~igSHs~--------~~~avd~~sG~~~We~il-------g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~ 86 (354)
T KOG4649|consen 23 KTLVVIGSHSG--------IVIAVDPQSGNLIWEAIL-------GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQI 86 (354)
T ss_pred ceEEEEecCCc--------eEEEecCCCCcEEeehhh-------CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhhe
Confidence 56788888888 888999998886332221 1223322221 4778999999999999999998653
Q ss_pred cceeeeeCCCCCCCCCe-EEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCc
Q 024868 99 INLLAKKMPPLQDAGPQ-KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGS 177 (261)
Q Consensus 99 ~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 177 (261)
...... +.| ......+++..|..++.|++.+..|.++...+.+.+...+-..+.+..|....|+.+...|.
T Consensus 87 w~f~~~--------~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~ 158 (354)
T KOG4649|consen 87 WNFVIL--------ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGA 158 (354)
T ss_pred eeeeeh--------hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccce
Confidence 332211 112 22445678999999999999999999998888776555544556666773333444444454
Q ss_pred EEEEE
Q 024868 178 ARIWK 182 (261)
Q Consensus 178 i~iwd 182 (261)
+.--.
T Consensus 159 vlavt 163 (354)
T KOG4649|consen 159 VLAVT 163 (354)
T ss_pred EEEEc
Confidence 43333
No 341
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.26 E-value=9.8e-05 Score=63.23 Aligned_cols=135 Identities=13% Similarity=0.200 Sum_probs=89.5
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCC-ceEEEECC-----CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGD-PMTIAVNP-----SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD 111 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 111 (261)
.++..|.+.+++ ...+..|... |..++-.. +...-+.|-.+..+..||.+-.. .++.......+..
T Consensus 505 ~ly~mDLe~GKV------V~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~--~k~v~~~~k~Y~~ 576 (794)
T PF08553_consen 505 KLYKMDLERGKV------VEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG--NKLVDSQSKQYSS 576 (794)
T ss_pred ceEEEecCCCcE------EEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC--Cceeecccccccc
Confidence 788999988886 5566666543 44443221 12234556677789999998644 1222222333444
Q ss_pred CCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee-ccccCCceeEEEEcCCCCEEEEecCCCcEEEEEc
Q 024868 112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKT 183 (261)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~ 183 (261)
.....|++-+.+| +||+|+.+|.|++||- .++.... +++...+|.+|..+.||+++++.+. ..+.+++.
T Consensus 577 ~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 577 KNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred CCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 5667788777777 7889999999999993 4443333 3344569999999999999887764 56777775
No 342
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.0001 Score=62.07 Aligned_cols=177 Identities=14% Similarity=0.092 Sum_probs=107.9
Q ss_pred EEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC-----eEEEEEccC
Q 024868 69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-----HLRIMHWPS 143 (261)
Q Consensus 69 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-----~i~~~d~~~ 143 (261)
-+|++.+..++.|+.+|.|.+++-.-... .......+ +.+..+....+..+|++.+.|+ .+++|+++.
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s~~~~------~~fqa~~~-siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSSFQLI------RGFQAYEQ-SIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecccceee------ehheecch-hhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence 34678888999999999888876543220 00111111 1233333233335666655543 489999864
Q ss_pred ce------EE--eeccc-----cCCceeEEEEcCCCCEEEEecCCCcEEEEEcc---CCcEEEEEeecCCCceEEEEEec
Q 024868 144 LR------II--LDEPK-----AHKSVLDMDFSLDSEFLATTSTDGSARIWKTE---DGVAWTFLTRNSDEKIELCRFSK 207 (261)
Q Consensus 144 ~~------~~--~~~~~-----~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~~~~v~~~~~~p 207 (261)
.+ .. .+... ...++.+++.+.+-+.+|+|-.+|.|..+.-+ .......+......+|+++++..
T Consensus 102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS 181 (933)
T ss_pred cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence 31 11 12222 23468899999999999999999999988643 11112233333455899999999
Q ss_pred CCCcceEEEEEeeCCCcEEEEEECCCCeE-EeeeeccCcCeeEEEEeeCCC
Q 024868 208 DGTKPFLFCTVQRGDKALLAVYDISTWNK-IGHKRLLRKPASVLSISLDGK 257 (261)
Q Consensus 208 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~s~dg~ 257 (261)
+++.. ++ +++ ...|.+|.+....+ ......++.++.+.++++...
T Consensus 182 d~~s~-lF-v~T---t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~ 227 (933)
T KOG2114|consen 182 DGKSV-LF-VAT---TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTY 227 (933)
T ss_pred CCcee-EE-EEe---cceeEEEEecCCCcceeeeccCCccceeeecCCCCc
Confidence 99873 11 222 34699999984442 334566777888888876544
No 343
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.25 E-value=0.00029 Score=56.81 Aligned_cols=137 Identities=11% Similarity=0.051 Sum_probs=86.6
Q ss_pred CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC
Q 024868 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH 154 (261)
Q Consensus 75 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 154 (261)
+..++.++.+|.+..+|..+++...+.. +. ....+ ..++..++.++.+|.+..+|..+++.+.......
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~------~~---~~~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~ 324 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKRE------YG---SVNDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLL 324 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeec------CC---CccCc--EEECCEEEEEcCCCeEEEEECCCCcEEEcccccC
Confidence 4567777788999999998876533211 11 11112 2245567777789999999999998776543222
Q ss_pred C-ceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEEC
Q 024868 155 K-SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231 (261)
Q Consensus 155 ~-~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~ 231 (261)
. ...+... .+..++.++.+|.++.+|..+|+.+...............+ .+++ ++.++.||.|+.++.
T Consensus 325 ~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~~------l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 325 HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADDK------LLIQARDGTVYAITR 393 (394)
T ss_pred CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECCE------EEEEeCCceEEEEeC
Confidence 1 2222222 25567888899999999999999887775432221222222 2444 466788888888764
No 344
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.25 E-value=0.0014 Score=52.44 Aligned_cols=201 Identities=14% Similarity=0.155 Sum_probs=103.0
Q ss_pred eeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeee-CCCCCCCCCeEEEEEee-----CC---cEE
Q 024868 57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKK-MPPLQDAGPQKCLSFSV-----DG---SRF 127 (261)
Q Consensus 57 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~-----~~---~~l 127 (261)
..+....++|++++.|. =-+++.|.++|.+.|.|++............ .........++++.|+. |+ -.+
T Consensus 80 ~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 80 TLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp EEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred hheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 34555578999999974 4489999999999999997765422211111 01112245788888874 22 367
Q ss_pred EEeccCCeEEEEEccC---ceE----EeeccccCCceeEEE-EcCC-C--------------------CEEEEecCCCcE
Q 024868 128 AAGGVDGHLRIMHWPS---LRI----ILDEPKAHKSVLDMD-FSLD-S--------------------EFLATTSTDGSA 178 (261)
Q Consensus 128 ~~~~~d~~i~~~d~~~---~~~----~~~~~~~~~~v~~~~-~s~~-~--------------------~~l~~~~~d~~i 178 (261)
++|...|.+.+|.+.. +.- ......+.+++..+. ++.+ | .+++.+ .+..+
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~i 237 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDI 237 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccce
Confidence 8888899999998752 111 111123344554444 3221 1 134444 46789
Q ss_pred EEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccC----cCeeEEEEee
Q 024868 179 RIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR----KPASVLSISL 254 (261)
Q Consensus 179 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~----~~v~~~~~s~ 254 (261)
+++...+.+...... ........+.+-+-....--.+++.-..+|.+++|.+..-+.+....... ..+....+++
T Consensus 238 rv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~ 316 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR 316 (395)
T ss_dssp EEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred EEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence 999998887766554 22222444555321100011124555678999999999988887666532 3455677888
Q ss_pred CCCEEe
Q 024868 255 DGKYLA 260 (261)
Q Consensus 255 dg~~la 260 (261)
+|..++
T Consensus 317 ~Gdi~~ 322 (395)
T PF08596_consen 317 NGDIFY 322 (395)
T ss_dssp TS-EEE
T ss_pred CCCEEE
Confidence 888664
No 345
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=5.6e-06 Score=63.50 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=74.3
Q ss_pred EEEEEccCceEEeeccccCCceeEEEEcCCCC-EEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceE
Q 024868 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (261)
Q Consensus 136 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 214 (261)
+++.+-.+.+.......+...|.+++|||..+ ++..++.+..|+|.|+++...+..+..+ ..+++++|.-|....
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~h~-- 250 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDERHV-- 250 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCCcce--
Confidence 55555555554443444455799999999877 7788999999999999999888888766 359999999998763
Q ss_pred EEEEeeCCCcEEEEEECCCCe
Q 024868 215 FCTVQRGDKALLAVYDISTWN 235 (261)
Q Consensus 215 ~~~~~~~~d~~i~~~d~~~~~ 235 (261)
+..|-.+|.|.+||++..+
T Consensus 251 --IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 251 --IYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred --eEEeccCceEEEEEccCCC
Confidence 5788899999999998654
No 346
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.22 E-value=3.4e-07 Score=74.02 Aligned_cols=180 Identities=13% Similarity=0.060 Sum_probs=114.8
Q ss_pred CCCceEEEECCC--CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEec----cCCe
Q 024868 63 EGDPMTIAVNPS--GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGG----VDGH 135 (261)
Q Consensus 63 ~~~v~~~~~~~~--~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~----~d~~ 135 (261)
...+.|++++-+ ...+++|..+|.|.+-.++..... .......+..++++++|++ |...||+|- .|..
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~ 130 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS 130 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----cceecccccccccccccccccHHHHHhhhhhhcccCC
Confidence 345777777553 346788889999999888765431 0112223457889999999 667777774 4567
Q ss_pred EEEEEccCce----EEeeccc-cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcE-EEEEeecCCCceEEEEEec-C
Q 024868 136 LRIMHWPSLR----IILDEPK-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSK-D 208 (261)
Q Consensus 136 i~~~d~~~~~----~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~p-~ 208 (261)
+.|||+.++- ....+.. ......+++|-.+.+.+.+|.....++++|++.... ...+. .. .+..+..+| .
T Consensus 131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn--Tk-~vqG~tVdp~~ 207 (783)
T KOG1008|consen 131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN--TK-YVQGITVDPFS 207 (783)
T ss_pred ccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh--hh-hcccceecCCC
Confidence 9999998761 1112222 122456888988889999999999999999984322 11221 12 366677788 6
Q ss_pred CCcceEEEEEeeCCCcEEEEEE-CCCCeE-EeeeeccC----cCeeEEEEeeCC
Q 024868 209 GTKPFLFCTVQRGDKALLAVYD-ISTWNK-IGHKRLLR----KPASVLSISLDG 256 (261)
Q Consensus 209 ~~~~~~~~~~~~~~d~~i~~~d-~~~~~~-~~~~~~~~----~~v~~~~~s~dg 256 (261)
+.+ +....||.|.+|| .++-+. +..+...+ ..+..++|.|..
T Consensus 208 ~nY------~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr 255 (783)
T KOG1008|consen 208 PNY------FCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR 255 (783)
T ss_pred CCc------eeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence 676 4455599999999 433332 21111111 247788888854
No 347
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.21 E-value=0.0013 Score=53.24 Aligned_cols=199 Identities=12% Similarity=0.091 Sum_probs=98.2
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCC-CCCeE
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD-AGPQK 116 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~v~ 116 (261)
.|..|+..+..+ ....+.. +.+.++.|+.+.+ |++-..||.+++||+.+.. ... .........- ...+.
T Consensus 62 ~I~iys~sG~ll-----~~i~w~~--~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~-~fs-l~~~i~~~~v~e~~i~ 131 (410)
T PF04841_consen 62 SIQIYSSSGKLL-----SSIPWDS--GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEF-QFS-LGEEIEEEKVLECRIF 131 (410)
T ss_pred EEEEECCCCCEe-----EEEEECC--CCEEEEEECCCCe-EEEEEcCCEEEEEeCCCce-eec-hhhhccccCccccccc
Confidence 466677666543 2233443 7899999988655 5566799999999986543 111 1111111000 11122
Q ss_pred EEEEeeCCcEEEEeccCCeEEEEEccCceEE-eeccccCC---------ceeE-EEEcCCCCEEEEecCCCcEEEEEccC
Q 024868 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-LDEPKAHK---------SVLD-MDFSLDSEFLATTSTDGSARIWKTED 185 (261)
Q Consensus 117 ~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~---------~v~~-~~~s~~~~~l~~~~~d~~i~iwd~~~ 185 (261)
...+..+| ++.-..++.+.+..--..... ........ .... ..++.+....+....++.+.+.+-..
T Consensus 132 ~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~ 209 (410)
T PF04841_consen 132 AIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS 209 (410)
T ss_pred ccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc
Confidence 22333345 333334555544432221111 11110000 0000 22333444444444445555443222
Q ss_pred CcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc-CcCeeEEEEeeCCCE
Q 024868 186 GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGKY 258 (261)
Q Consensus 186 ~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~s~dg~~ 258 (261)
.+. +. ..+++..++.||+|++ ++.-..+|.+.+....-.+.+..+... ......+.|.-+...
T Consensus 210 ~~~---i~--~~~~i~~iavSpng~~-----iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav 273 (410)
T PF04841_consen 210 FKQ---ID--SDGPIIKIAVSPNGKF-----IALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV 273 (410)
T ss_pred ccc---cc--CCCCeEEEEECCCCCE-----EEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE
Confidence 111 11 2246999999999998 344456788888886655554444433 345567777766543
No 348
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1e-05 Score=65.57 Aligned_cols=92 Identities=15% Similarity=0.080 Sum_probs=71.3
Q ss_pred CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCC-CCCCe-EEEEEeeCCcEEEEeccCCeEEEEEc
Q 024868 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQ-KCLSFSVDGSRFAAGGVDGHLRIMHW 141 (261)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~v-~~~~~s~~~~~l~~~~~d~~i~~~d~ 141 (261)
-.+.-+.|+|.-..+|.+..+|.+.+..+.-.+. -.++ +...+ .+++|.|||+.|++|-.||+|++.|+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRl---------wtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dv 91 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQRL---------WTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDV 91 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecccee---------EeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEc
Confidence 4577899999999999999999999998873331 1222 23344 49999999999999999999999999
Q ss_pred cCceEEeeccc-cCCceeEEEEcC
Q 024868 142 PSLRIILDEPK-AHKSVLDMDFSL 164 (261)
Q Consensus 142 ~~~~~~~~~~~-~~~~v~~~~~s~ 164 (261)
.++..+..... ....|.++-|++
T Consensus 92 e~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 92 EKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred cCCCceeccccccccchheeeccc
Confidence 99887765432 234688888874
No 349
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.17 E-value=6.3e-05 Score=63.17 Aligned_cols=135 Identities=14% Similarity=0.090 Sum_probs=79.6
Q ss_pred CCeEEEEEeeCCcEEEEec------cCC--eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCC---------
Q 024868 113 GPQKCLSFSVDGSRFAAGG------VDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD--------- 175 (261)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~------~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------- 175 (261)
..+.+.+++|||+.++... .|. .|.+++.. +.. ..+... .......|+|||+.+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC-CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999999887765 243 45555542 222 222222 247889999998877776532
Q ss_pred ---CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEE---EECCCCeE-E---eeee-ccC
Q 024868 176 ---GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAV---YDISTWNK-I---GHKR-LLR 244 (261)
Q Consensus 176 ---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~---~d~~~~~~-~---~~~~-~~~ 244 (261)
+.+.+.++..++... .....|..+.|||||+++.+ ++ +++|++ -....|+. + ..+. ...
T Consensus 427 ~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~--i~----~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~ 496 (591)
T PRK13616 427 PATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAM--II----GGKVYLAVVEQTEDGQYALTNPREVGPGLG 496 (591)
T ss_pred CCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEE--EE----CCEEEEEEEEeCCCCceeecccEEeecccC
Confidence 233333444333322 12335999999999998432 11 367777 44445541 1 0111 222
Q ss_pred cCeeEEEEeeCCCEEe
Q 024868 245 KPASVLSISLDGKYLA 260 (261)
Q Consensus 245 ~~v~~~~~s~dg~~la 260 (261)
..+.++.|.++++.++
T Consensus 497 ~~~~~l~W~~~~~L~V 512 (591)
T PRK13616 497 DTAVSLDWRTGDSLVV 512 (591)
T ss_pred CccccceEecCCEEEE
Confidence 3468899999998653
No 350
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.15 E-value=0.003 Score=52.50 Aligned_cols=163 Identities=11% Similarity=0.113 Sum_probs=93.9
Q ss_pred EEECCCCCeEEEEecCC------------------cEEEEEEeCCccccceeeeeCCC--CCCCC-Ce-EEEEEeeCCc-
Q 024868 69 IAVNPSGDDFVCSTTNG------------------GCKLFEVYGGATDINLLAKKMPP--LQDAG-PQ-KCLSFSVDGS- 125 (261)
Q Consensus 69 ~~~~~~~~~l~~~~~dg------------------~i~i~~~~~~~~~~~~~~~~~~~--~~~~~-~v-~~~~~s~~~~- 125 (261)
.++.+.+..++.++.++ .+.-+|..+++...+........ ..... ++ ..+. .-++.
T Consensus 222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~ 300 (488)
T cd00216 222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKP 300 (488)
T ss_pred eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCCe
Confidence 44555566777776554 68888988887644432110000 00111 11 1110 11343
Q ss_pred --EEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEe------------------cCCCcEEEEEccC
Q 024868 126 --RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT------------------STDGSARIWKTED 185 (261)
Q Consensus 126 --~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~------------------~~d~~i~iwd~~~ 185 (261)
.++.++.+|.+..+|.++++.+....... ..++.+| ..++.+ ..+|.+.-.|+.+
T Consensus 301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t 375 (488)
T cd00216 301 VPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT 375 (488)
T ss_pred eEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence 57778889999999999999877653221 1233344 223322 2357888999999
Q ss_pred CcEEEEEeecCC-------CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868 186 GVAWTFLTRNSD-------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (261)
Q Consensus 186 ~~~~~~~~~~~~-------~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~ 242 (261)
|+.+.+...... .+...-.....+.. ++.++.||.++.+|.++|+.+.....
T Consensus 376 G~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~-----v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 376 GKVVWEKREGTIRDSWNIGFPHWGGSLATAGNL-----VFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CcEeeEeeCCccccccccCCcccCcceEecCCe-----EEEECCCCeEEEEECCCCceeeEEEC
Confidence 998777654310 11111011123444 46777899999999999998876654
No 351
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.14 E-value=4.8e-05 Score=62.63 Aligned_cols=117 Identities=10% Similarity=0.135 Sum_probs=87.4
Q ss_pred CCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccc-cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEE
Q 024868 112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT 190 (261)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~ 190 (261)
...+.--+++..+++++.|+..|.+++|.-..++....... .++.+.....|++..++|+|+..|.|.++-++.+.+..
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 34555556777889999999999999999666554322221 34456777889999999999999999999987644322
Q ss_pred E---Eeec--CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868 191 F---LTRN--SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (261)
Q Consensus 191 ~---~~~~--~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~ 233 (261)
. -..+ +...|++++|++++.. +++|...|+|..-.+.+
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k-----~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMK-----LYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccE-----EeecCCCceEEEEEech
Confidence 1 1112 2446999999999999 68999999999888876
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.14 E-value=0.00019 Score=58.07 Aligned_cols=128 Identities=19% Similarity=0.173 Sum_probs=72.2
Q ss_pred CeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEe
Q 024868 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT 193 (261)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 193 (261)
....+.++|+|++++++ .+|.-.++......... .+.-....|.+.++ +|+-..++.|.|+.--+.+....+.
T Consensus 34 ~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~ 106 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIK 106 (443)
T ss_dssp --SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT----
T ss_pred CCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEc
Confidence 46789999999999996 68888888743333211 23456788998655 5555557889997432222223343
Q ss_pred ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 194 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
... .+..+ |. |.. +...+. +.|.+||..+++.+..+... +|..+.|+++|+++|.
T Consensus 107 ~~~--~~~~I-f~--G~L-----L~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val 161 (443)
T PF04053_consen 107 LPF--SVEKI-FG--GNL-----LGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVAL 161 (443)
T ss_dssp -SS---EEEE-E---SSS-----EEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEE
T ss_pred CCc--ccceE-Ec--CcE-----EEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEE
Confidence 222 24444 32 776 343433 37999999999988766543 4899999999999873
No 353
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.11 E-value=0.0012 Score=52.80 Aligned_cols=189 Identities=14% Similarity=0.171 Sum_probs=103.8
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecC------CCCCceEEEECC----
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE------SEGDPMTIAVNP---- 73 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~---- 73 (261)
+++|++++.+. --++|+|..+| .+.++|..+..+.. ...+.. ....++++.|+.
T Consensus 86 ~g~vtal~~S~----iGFvaigy~~G--------~l~viD~RGPavI~----~~~i~~~~~~~~~~~~vt~ieF~vm~~~ 149 (395)
T PF08596_consen 86 QGPVTALKNSD----IGFVAIGYESG--------SLVVIDLRGPAVIY----NENIRESFLSKSSSSYVTSIEFSVMTLG 149 (395)
T ss_dssp S-SEEEEEE-B----TSEEEEEETTS--------EEEEEETTTTEEEE----EEEGGG--T-SS----EEEEEEEEEE-T
T ss_pred CCcEeEEecCC----CcEEEEEecCC--------cEEEEECCCCeEEe----eccccccccccccccCeeEEEEEEEecC
Confidence 78999999975 45899999999 99999998776522 222222 234577888852
Q ss_pred -CC---CeEEEEecCCcEEEEEEeCCc-c--ccceeeeeCCCCCCCCCeEEEE-EeeC-C-------------------c
Q 024868 74 -SG---DDFVCSTTNGGCKLFEVYGGA-T--DINLLAKKMPPLQDAGPQKCLS-FSVD-G-------------------S 125 (261)
Q Consensus 74 -~~---~~l~~~~~dg~i~i~~~~~~~-~--~~~~~~~~~~~~~~~~~v~~~~-~s~~-~-------------------~ 125 (261)
|+ -.|++|...|.+.+|.+.... . ....... ...+.+++..+. ++.+ | .
T Consensus 150 ~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~---~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~ 226 (395)
T PF08596_consen 150 GDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGA---TTNHDSPILSIIPINADTGESALATISAMQGLSKGISIP 226 (395)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEE---E--SS----EEEEEETTT--B-B-BHHHHHGGGGT----
T ss_pred CCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeec---cccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcC
Confidence 33 368889999999999986321 1 1111111 123344554443 3222 1 1
Q ss_pred EEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc-----CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC---
Q 024868 126 RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS-----LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD--- 197 (261)
Q Consensus 126 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--- 197 (261)
.+++...+..++++...+.+...+.....-....+.+- ..+..|++-..+|.+++|.+..-+.+........
T Consensus 227 g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~ 306 (395)
T PF08596_consen 227 GYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDS 306 (395)
T ss_dssp EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---H
T ss_pred cEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccc
Confidence 13333357789999988877766555322233344442 3566788888999999999998888877765321
Q ss_pred CceEEEEEecCCCc
Q 024868 198 EKIELCRFSKDGTK 211 (261)
Q Consensus 198 ~~v~~~~~~p~~~~ 211 (261)
..+....++++|..
T Consensus 307 ~~~~~ssis~~Gdi 320 (395)
T PF08596_consen 307 RRLSSSSISRNGDI 320 (395)
T ss_dssp HHHTT-EE-TTS-E
T ss_pred ccccccEECCCCCE
Confidence 12445677899986
No 354
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=2.6e-05 Score=65.71 Aligned_cols=111 Identities=16% Similarity=0.200 Sum_probs=84.0
Q ss_pred CceEEEECCCCCeEEEEec----CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEE
Q 024868 65 DPMTIAVNPSGDDFVCSTT----NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH 140 (261)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 140 (261)
..+-.+|+|...++++++. .|.|.||- +++++ .....-.-.+.+++|+|..-.|+.|-.-|.+.+|.
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEP--------qr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~ 87 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEP--------QRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQK 87 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCC--------CcccccceehhhhccChHHHHHhhccccceeEEEe
Confidence 3345679999998887764 47888883 34443 11111223457799999888888888889999999
Q ss_pred ccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEcc
Q 024868 141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184 (261)
Q Consensus 141 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~ 184 (261)
..+.+.-.....|..+|..+.|||+|..++++..-|.+.+|...
T Consensus 88 ~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 88 TNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 87776654555667799999999999999999999999999876
No 355
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=98.03 E-value=0.0041 Score=49.45 Aligned_cols=213 Identities=18% Similarity=0.171 Sum_probs=95.4
Q ss_pred EEEEEcCCCCceecCCeEEeeecC---CC----CCceEEEECCCCCeEEEEec------CCcEEEEEEeCCccccceeee
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDE---SE----GDPMTIAVNPSGDDFVCSTT------NGGCKLFEVYGGATDINLLAK 104 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~---~~----~~v~~~~~~~~~~~l~~~~~------dg~i~i~~~~~~~~~~~~~~~ 104 (261)
+|+++|..+... .|.....+.. +. .....+..-|+|+.++++-. -|-+.++|-++...... .
T Consensus 99 rIyviD~~~dPr--~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~-W-- 173 (461)
T PF05694_consen 99 RIYVIDTKTDPR--KPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGR-W-- 173 (461)
T ss_dssp -EEEEE--S-TT--S-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE----
T ss_pred cEEEEECCCCCC--CCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccce-e--
Confidence 899999875432 2333333322 11 23445556689988887532 24577777665443111 1
Q ss_pred eCCCCCCCCCeEEEEEeeCCcEEEEec--------------------cCCeEEEEEccCceEEeeccccCC--ceeEEEE
Q 024868 105 KMPPLQDAGPQKCLSFSVDGSRFAAGG--------------------VDGHLRIMHWPSLRIILDEPKAHK--SVLDMDF 162 (261)
Q Consensus 105 ~~~~~~~~~~v~~~~~s~~~~~l~~~~--------------------~d~~i~~~d~~~~~~~~~~~~~~~--~v~~~~~ 162 (261)
.........-+.+-|.|..+.+++.. ...++.+||+.+.+.++.+.-... ....+.|
T Consensus 174 -e~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRf 252 (461)
T PF05694_consen 174 -EKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRF 252 (461)
T ss_dssp --SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE
T ss_pred -ccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEe
Confidence 11111123346777888777777653 135799999999988776654433 4667887
Q ss_pred cCC--CCEEEE-ecCCCcEEEEEc-cCCcE----EEEEeec---------C-------CCceEEEEEecCCCcceEEEEE
Q 024868 163 SLD--SEFLAT-TSTDGSARIWKT-EDGVA----WTFLTRN---------S-------DEKIELCRFSKDGTKPFLFCTV 218 (261)
Q Consensus 163 s~~--~~~l~~-~~~d~~i~iwd~-~~~~~----~~~~~~~---------~-------~~~v~~~~~~p~~~~~~~~~~~ 218 (261)
..+ ..+=++ +....+|..|-- ..++- +..+... . ..-++.+..|.|.+++| +
T Consensus 253 lH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLY----v 328 (461)
T PF05694_consen 253 LHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLY----V 328 (461)
T ss_dssp -SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEE----E
T ss_pred cCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEE----E
Confidence 554 333222 223445554443 34431 1122110 0 12378899999999864 5
Q ss_pred eeCCCcEEEEEECCCCe---EEeeeecc----------------CcCeeEEEEeeCCCEEe
Q 024868 219 QRGDKALLAVYDISTWN---KIGHKRLL----------------RKPASVLSISLDGKYLA 260 (261)
Q Consensus 219 ~~~~d~~i~~~d~~~~~---~~~~~~~~----------------~~~v~~~~~s~dg~~la 260 (261)
++=.+|.|+.||+.... +..+.... .+...-++.|-||+.|.
T Consensus 329 s~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlY 389 (461)
T PF05694_consen 329 SNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLY 389 (461)
T ss_dssp EETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEE
T ss_pred EcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEE
Confidence 56678999999997543 33322211 12346788999999875
No 356
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.02 E-value=0.0022 Score=50.23 Aligned_cols=178 Identities=13% Similarity=0.217 Sum_probs=101.4
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCce---EEEECCC----CCeEEEEec---------C-CcEEEEEEeCC-cccc
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPM---TIAVNPS----GDDFVCSTT---------N-GGCKLFEVYGG-ATDI 99 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~~~~~----~~~l~~~~~---------d-g~i~i~~~~~~-~~~~ 99 (261)
.+..+|+.+... .....+... ..+. .+.+..+ ..++++|.. . |.+.++++... ....
T Consensus 3 ~i~l~d~~~~~~----~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~ 77 (321)
T PF03178_consen 3 SIRLVDPTTFEV----LDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNF 77 (321)
T ss_dssp EEEEEETTTSSE----EEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----
T ss_pred EEEEEeCCCCeE----EEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccce
Confidence 456667765543 223444432 2233 3444432 456776643 2 88999999884 1101
Q ss_pred ceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCC--ceeEEEEcCCCCEEEEecCCCc
Q 024868 100 NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK--SVLDMDFSLDSEFLATTSTDGS 177 (261)
Q Consensus 100 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~d~~ 177 (261)
++. ........++|++++-- +++ |+++ ..+.|.+|++...+.+......+. .+.++... +++++.|.....
T Consensus 78 ~l~--~i~~~~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~s 150 (321)
T PF03178_consen 78 KLK--LIHSTEVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKS 150 (321)
T ss_dssp EEE--EEEEEEESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSS
T ss_pred EEE--EEEEEeecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccC
Confidence 111 11112235788888765 454 5444 468899999987772222222222 45555444 668999988888
Q ss_pred EEEEEccC-CcEEEEEe-ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868 178 ARIWKTED-GVAWTFLT-RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (261)
Q Consensus 178 i~iwd~~~-~~~~~~~~-~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~ 232 (261)
+.++..+. ++.+..+. ......+.++.|-++++. ++.+..+|.+.++...
T Consensus 151 v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~-----~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 151 VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDT-----IIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSE-----EEEEETTSEEEEEEE-
T ss_pred EEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcE-----EEEEcCCCeEEEEEEC
Confidence 88886553 33233332 233445888999877764 5788889999999876
No 357
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.01 E-value=0.00095 Score=54.28 Aligned_cols=116 Identities=19% Similarity=0.162 Sum_probs=73.1
Q ss_pred EEEEEeeCCcEEEEec-cCC----eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCC-----------CcEE
Q 024868 116 KCLSFSVDGSRFAAGG-VDG----HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-----------GSAR 179 (261)
Q Consensus 116 ~~~~~s~~~~~l~~~~-~d~----~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------~~i~ 179 (261)
..+.+||||+++|.+- ..| .++++|+++++.+....... ....+.|.+|++.|+....+ ..|+
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 4678899999988762 333 59999999997754332211 12349999998876654432 2377
Q ss_pred EEEccCCcEE--EEEeecCCCc-eEEEEEecCCCcceEEEEEeeCCC-cEEEEEECCCC
Q 024868 180 IWKTEDGVAW--TFLTRNSDEK-IELCRFSKDGTKPFLFCTVQRGDK-ALLAVYDISTW 234 (261)
Q Consensus 180 iwd~~~~~~~--~~~~~~~~~~-v~~~~~~p~~~~~~~~~~~~~~~d-~~i~~~d~~~~ 234 (261)
.|.+.+.... ..+....... ...+..++|++++++ ....+.+ ..+++.|+..+
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i--~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFI--SSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEE--EEESSSSEEEEEEEECCCT
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEE--EEEccccCCeEEEEecccc
Confidence 8887765432 3344333322 567889999998443 2334444 78999999875
No 358
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.98 E-value=0.0031 Score=52.37 Aligned_cols=159 Identities=13% Similarity=0.116 Sum_probs=91.7
Q ss_pred CeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCe-EEEEEeeCCcEEEEec---------cCCeEEEEEccCce
Q 024868 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQ-KCLSFSVDGSRFAAGG---------VDGHLRIMHWPSLR 145 (261)
Q Consensus 76 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~---------~d~~i~~~d~~~~~ 145 (261)
..++.++.++.|+-+|.++++...+....... .....+ ....+. +..++.++ .++.+.-+|..+++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~--~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~ 186 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQV--PPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGK 186 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCc--CcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCc
Confidence 57777888999999999988764432211000 000000 111111 23444443 36789999999999
Q ss_pred EEeeccccCC--------------------ce-eEEEEcCCCCEEEEecCCC------------------cEEEEEccCC
Q 024868 146 IILDEPKAHK--------------------SV-LDMDFSLDSEFLATTSTDG------------------SARIWKTEDG 186 (261)
Q Consensus 146 ~~~~~~~~~~--------------------~v-~~~~~s~~~~~l~~~~~d~------------------~i~iwd~~~~ 186 (261)
.+........ .+ ...+..+.+..++.++.++ .+.-+|.++|
T Consensus 187 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG 266 (488)
T cd00216 187 LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG 266 (488)
T ss_pred eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC
Confidence 8776543211 01 1244455566777776554 7999999999
Q ss_pred cEEEEEeecCCC-----ceEEEEEe----cCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868 187 VAWTFLTRNSDE-----KIELCRFS----KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (261)
Q Consensus 187 ~~~~~~~~~~~~-----~v~~~~~~----p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~ 240 (261)
+....+...... ......+. -+|... ..++.++.+|.++..|.++|+.+-..
T Consensus 267 ~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~--~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 267 KVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPV--PAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred CEEEEeeCCCCCCcccccCCCCeEEeccccCCCee--EEEEEECCCceEEEEECCCCcEeeEe
Confidence 998876532110 00111111 133311 11567788999999999999987544
No 359
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.00045 Score=55.47 Aligned_cols=136 Identities=10% Similarity=0.155 Sum_probs=87.9
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCe-------EEEEecCCcEEEEEEeCCccccceeeeeCCCCC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDD-------FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ 110 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 110 (261)
.++..|.+.+++ ...+.-|.+ |.-+.+.|+.+. -+.|-.+..|.-||.+-... ..+...+...+.
T Consensus 357 ~l~klDIE~GKI------VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-~kl~~~q~kqy~ 428 (644)
T KOG2395|consen 357 KLYKLDIERGKI------VEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-NKLAVVQSKQYS 428 (644)
T ss_pred cceeeeccccee------eeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc-ceeeeeeccccc
Confidence 678888888776 445555554 777788886542 23455677799999874432 122222223333
Q ss_pred CCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE-eeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEcc
Q 024868 111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184 (261)
Q Consensus 111 ~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~ 184 (261)
......|.+-..+| +|++|+.+|.|++||- .+... ..+++...+|..+..+.||++|+..+ +..+.+.++.
T Consensus 429 ~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 429 TKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred cccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 34445555555455 7889999999999995 44433 33455556899999999999888765 4566666653
No 360
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.94 E-value=0.0086 Score=52.00 Aligned_cols=240 Identities=14% Similarity=0.126 Sum_probs=129.1
Q ss_pred CceeeEEEEEeeCCcce---EEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEE
Q 024868 4 GGTVTCGSWIKRPENVN---LVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC 80 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 80 (261)
.+.|.|+.++|-++..+ ++++|-....+ .+..+.++....... ....+.-...|.-..+--|..+|.+
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~------~~l~~~pd~~~~~~~---~l~~~~iPRSIl~~~~e~d~~yLlv 600 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDIS------MILTFLPDLILITHE---QLSGEIIPRSILLTTFEGDIHYLLV 600 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceE------EEEEECCCcceeeee---ccCCCccchheeeEEeeccceEEEE
Confidence 56899999999887777 89999887743 555666655432110 0011111234555556567889999
Q ss_pred EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeE-
Q 024868 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLD- 159 (261)
Q Consensus 81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~- 159 (261)
+..||.+.-|.++....... ...+..-+..|+.--.|+..++.-+.+..|+-..+|. .+++....-..-. .+..
T Consensus 601 algdG~l~~fv~d~~tg~ls---d~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~-~n~kLv~spls~k-ev~~~ 675 (1096)
T KOG1897|consen 601 ALGDGALLYFVLDINTGQLS---DRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYS-SNGKLVYSPLSLK-EVNHM 675 (1096)
T ss_pred EcCCceEEEEEEEcccceEc---cccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEe-cCCcEEEeccchH-Hhhhh
Confidence 99999998877765432111 1111122345666667777665555555677666665 3455433322211 2222
Q ss_pred EEEcCC--CCEEEEecCCCcEEEEEccCCcE--EEEEeecCCCceEEEEEecCCCcceEEEE----EeeC---CC---cE
Q 024868 160 MDFSLD--SEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCT----VQRG---DK---AL 225 (261)
Q Consensus 160 ~~~s~~--~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~~~~~~----~~~~---~d---~~ 225 (261)
..|+.+ +..++++. .+.+.+.-++.-+. ++++. ....++.+++.+.... |.+.. ..+. .. ..
T Consensus 676 c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvp--l~~~prrI~~q~~sl~-~~v~s~r~e~~~~~~~ee~~~s~ 751 (1096)
T KOG1897|consen 676 CPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVP--LGESPRRICYQESSLT-FGVLSNRIESSAEYYGEEYEVSF 751 (1096)
T ss_pred cccccccCCceEEEec-CCceEEEEecchhhcceeeec--CCCChhheEecccceE-EEEEecccccchhhcCCcceEEE
Confidence 223322 33455553 46677777664332 23333 3334777888773332 21100 0111 11 25
Q ss_pred EEEEECCCCeEEeeeeccC----cCeeEEEEeeC-CCEEeC
Q 024868 226 LAVYDISTWNKIGHKRLLR----KPASVLSISLD-GKYLAM 261 (261)
Q Consensus 226 i~~~d~~~~~~~~~~~~~~----~~v~~~~~s~d-g~~la~ 261 (261)
++++|-++.+.+....... ..+.+..|..| ++++++
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vV 792 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVV 792 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEE
Confidence 7888888777654333222 24555668877 666653
No 361
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.92 E-value=0.001 Score=50.11 Aligned_cols=142 Identities=18% Similarity=0.103 Sum_probs=87.3
Q ss_pred CeEEEEEeeCCcEEEEec---cCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEE-ccCCcEE
Q 024868 114 PQKCLSFSVDGSRFAAGG---VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK-TEDGVAW 189 (261)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd-~~~~~~~ 189 (261)
.+.+.+++++++.+++.. ....++++.. +....... ....+...+|++++...+....+...+++. ..+++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 678899999999887765 2334555543 33322222 223788899999988777766666666663 3333322
Q ss_pred E-EEeecCC-CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC---CC--eE----EeeeeccCcCeeEEEEeeCCCE
Q 024868 190 T-FLTRNSD-EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS---TW--NK----IGHKRLLRKPASVLSISLDGKY 258 (261)
Q Consensus 190 ~-~~~~~~~-~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~---~~--~~----~~~~~~~~~~v~~~~~s~dg~~ 258 (261)
. ....... ..|..+.+||||..+.+ +.....++.|.+--+. .+ .. +.........+.+++|.+++++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~--v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAV--VVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEE--EEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 2 2221211 16999999999998433 4445556788877643 22 11 1111123467889999999987
Q ss_pred Ee
Q 024868 259 LA 260 (261)
Q Consensus 259 la 260 (261)
++
T Consensus 180 ~V 181 (253)
T PF10647_consen 180 VV 181 (253)
T ss_pred EE
Confidence 65
No 362
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.91 E-value=0.0013 Score=56.62 Aligned_cols=130 Identities=15% Similarity=0.100 Sum_probs=87.3
Q ss_pred CCcEEEEe-ccCCeEEEEEccCceEEeeccccCC-ceeEEEEcCC-------CCEEEEecCCCcEEEEEccCCc--EEEE
Q 024868 123 DGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLD-------SEFLATTSTDGSARIWKTEDGV--AWTF 191 (261)
Q Consensus 123 ~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~-------~~~l~~~~~d~~i~iwd~~~~~--~~~~ 191 (261)
+.++|+.- .....|+-.|+..|+.+..+..+.. +|..+ .|+ ....+.|-.++.+..||.+-.. ++..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~ 569 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS 569 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeec
Confidence 33444443 3457799999999999877766554 34444 443 2345666678899999998532 2211
Q ss_pred Ee--ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 192 LT--RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 192 ~~--~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
-. -.......|++-+.+|. ++.|+.+|.||+||--..+.-..+.+.+.+|..+..+.||+||+
T Consensus 570 ~~k~Y~~~~~Fs~~aTt~~G~------iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwil 634 (794)
T PF08553_consen 570 QSKQYSSKNNFSCFATTEDGY------IAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWIL 634 (794)
T ss_pred cccccccCCCceEEEecCCce------EEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEE
Confidence 10 01222477888888887 48999999999999533222233556789999999999999986
No 363
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.88 E-value=0.0013 Score=48.24 Aligned_cols=123 Identities=11% Similarity=0.008 Sum_probs=87.3
Q ss_pred CcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEE
Q 024868 124 GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELC 203 (261)
Q Consensus 124 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~ 203 (261)
..+++.|+..+.+.-.|..+++..++..-. ..+.+-+.- -|.+++.|...|.+++.+.++|.....+..-..-.++ .
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~-a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR-A 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc-e
Confidence 356778888899999999999887654422 233333222 4778999999999999999999888777654432233 4
Q ss_pred EEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEee
Q 024868 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL 254 (261)
Q Consensus 204 ~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~ 254 (261)
...+++.. +..++.|++.+..|.++...+...+..++.-.+.+..|
T Consensus 100 ~~d~~~gl-----Iycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 100 QCDFDGGL-----IYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP 145 (354)
T ss_pred EEcCCCce-----EEEecCCCcEEEecccccceEEecccCCceeccceecC
Confidence 46788887 68899999999999998887765554443333344444
No 364
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.88 E-value=0.0045 Score=44.87 Aligned_cols=135 Identities=10% Similarity=-0.013 Sum_probs=80.3
Q ss_pred CCCeEEEEEeeCCcEEEEeccC---------CeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEE-EecCCCcEEEE
Q 024868 112 AGPQKCLSFSVDGSRFAAGGVD---------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIW 181 (261)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~~~d---------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~i~iw 181 (261)
..+.++-..+|+|++++-.-.| |.++.|-.. ..+......-.--..++|+.+.+.++ +-+.+-.|.-|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 4567778889999985433222 334444321 11111221122235688988777655 44556677777
Q ss_pred E--ccCCcE-----EEEEeec---CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEE
Q 024868 182 K--TEDGVA-----WTFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLS 251 (261)
Q Consensus 182 d--~~~~~~-----~~~~~~~---~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~ 251 (261)
| +.+|.. +..+... .....-.++...+|.. .++.-..++|...|..+|+.+.++......+++++
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L-----~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitscc 260 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNL-----YVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCC 260 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcE-----EEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEE
Confidence 7 555532 2222211 1111334556667765 24555667899999999999988888888899998
Q ss_pred Ee
Q 024868 252 IS 253 (261)
Q Consensus 252 ~s 253 (261)
|-
T Consensus 261 Fg 262 (310)
T KOG4499|consen 261 FG 262 (310)
T ss_pred ec
Confidence 85
No 365
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.87 E-value=0.0013 Score=41.80 Aligned_cols=100 Identities=12% Similarity=0.158 Sum_probs=64.3
Q ss_pred ceEEEECC---CC-CeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEc
Q 024868 66 PMTIAVNP---SG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (261)
Q Consensus 66 v~~~~~~~---~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~ 141 (261)
|+++++.. || +.|++|+.|..|++|+-..- ...+...+.|..+.-... ..++.+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~----------~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI----------VAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE----------EEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 45566543 33 57999999999999986542 222333567777776665 56888889999999974
Q ss_pred cCceEEeeccccCCceeEEEEcC-C--CC-EEEEecCCCcEE
Q 024868 142 PSLRIILDEPKAHKSVLDMDFSL-D--SE-FLATTSTDGSAR 179 (261)
Q Consensus 142 ~~~~~~~~~~~~~~~v~~~~~s~-~--~~-~l~~~~~d~~i~ 179 (261)
....++....+. +.++.+.. + |. -|++|=.+|.|-
T Consensus 71 --~~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 --SQRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred --cceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 444455554443 55555433 3 32 577777777653
No 366
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.83 E-value=0.0087 Score=46.91 Aligned_cols=194 Identities=14% Similarity=0.139 Sum_probs=99.0
Q ss_pred CceeeEEEEEeeCC----cceEEEEecCCCCC--CCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCe
Q 024868 4 GGTVTCGSWIKRPE----NVNLVVLGKSSRAS--SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDD 77 (261)
Q Consensus 4 ~~~v~~~~~~~~~~----~~~~~~~g~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 77 (261)
...++|++...-+. ...++++|..-... .....-+++.|+...............-....++|++++-- ++ +
T Consensus 23 ~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~ 100 (321)
T PF03178_consen 23 NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-R 100 (321)
T ss_dssp TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-E
T ss_pred CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-E
Confidence 34556665543221 25678877652211 10110255555554420000001111122346788888876 34 4
Q ss_pred EEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC-ceEEeeccc--cC
Q 024868 78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-LRIILDEPK--AH 154 (261)
Q Consensus 78 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~--~~ 154 (261)
|+++ ..+.|++|++..... +.. .........+.++.. .+.++++|.....+.++..+. ......... ..
T Consensus 101 lv~~-~g~~l~v~~l~~~~~---l~~--~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~ 172 (321)
T PF03178_consen 101 LVVA-VGNKLYVYDLDNSKT---LLK--KAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQP 172 (321)
T ss_dssp EEEE-ETTEEEEEEEETTSS---EEE--EEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-
T ss_pred EEEe-ecCEEEEEEccCccc---chh--hheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCC
Confidence 5554 457799999998771 111 111111224555544 466999998777788775543 222222222 22
Q ss_pred CceeEEEEcCCCCEEEEecCCCcEEEEEccC-------C--cEEEEEeecCCCceEEE---EEec
Q 024868 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTED-------G--VAWTFLTRNSDEKIELC---RFSK 207 (261)
Q Consensus 155 ~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~-------~--~~~~~~~~~~~~~v~~~---~~~p 207 (261)
..+.++.+-++++.++.+..+|.+.++.... + +.......|.+..|+++ ++.|
T Consensus 173 ~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~ 237 (321)
T PF03178_consen 173 RWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIP 237 (321)
T ss_dssp BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS-
T ss_pred ccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeee
Confidence 3588888887767889999999999998762 2 23333444555567777 5555
No 367
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.82 E-value=8.2e-05 Score=37.29 Aligned_cols=36 Identities=19% Similarity=0.434 Sum_probs=31.4
Q ss_pred EeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEE
Q 024868 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFE 91 (261)
Q Consensus 56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~ 91 (261)
...+..|...|.++.|+++++.+++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345567888999999999999999999999999996
No 368
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.81 E-value=7.5e-05 Score=37.43 Aligned_cols=35 Identities=29% Similarity=0.541 Sum_probs=29.6
Q ss_pred eeccccCCceeEEEEcCCCCEEEEecCCCcEEEEE
Q 024868 148 LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK 182 (261)
Q Consensus 148 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd 182 (261)
..+..+...+.++.|+++++++++++.|+.+++|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 33445566899999999999999999999999996
No 369
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.78 E-value=0.014 Score=47.52 Aligned_cols=209 Identities=14% Similarity=0.117 Sum_probs=103.6
Q ss_pred eEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC-----------cEEEEEEeCCccccceeeee
Q 024868 37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG-----------GCKLFEVYGGATDINLLAKK 105 (261)
Q Consensus 37 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------~i~i~~~~~~~~~~~~~~~~ 105 (261)
..++.+|..+++.... .+.. .....+.|.++++.|+....+. .|+.|.+.+......++-..
T Consensus 150 ~~l~v~Dl~tg~~l~d-----~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~ 222 (414)
T PF02897_consen 150 YTLRVFDLETGKFLPD-----GIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEE 222 (414)
T ss_dssp EEEEEEETTTTEEEEE-----EEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-
T ss_pred EEEEEEECCCCcCcCC-----cccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEee
Confidence 4799999988864211 1111 1123499999998887665433 25566665544321121111
Q ss_pred CCCCCCCCCeEEEEEeeCCcEEEEec---cC-CeEEEEEccCc----eEEeeccccCCce-eEEEEcCCCCEEEEecC--
Q 024868 106 MPPLQDAGPQKCLSFSVDGSRFAAGG---VD-GHLRIMHWPSL----RIILDEPKAHKSV-LDMDFSLDSEFLATTST-- 174 (261)
Q Consensus 106 ~~~~~~~~~v~~~~~s~~~~~l~~~~---~d-~~i~~~d~~~~----~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~-- 174 (261)
.........+..++|+++++... .+ ..+++.++..+ .....+......+ ..+... .+.+++....
T Consensus 223 ---~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a 298 (414)
T PF02897_consen 223 ---PDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDA 298 (414)
T ss_dssp ---TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-
T ss_pred ---cCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCC
Confidence 11111256788999999887643 23 45888888764 1222233333333 334333 4444444332
Q ss_pred -CCcEEEEEccCCcE---EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc-CcCeeE
Q 024868 175 -DGSARIWKTEDGVA---WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-RKPASV 249 (261)
Q Consensus 175 -d~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~v~~ 249 (261)
++.|.-.++.+... ...+..+... +.-..+...+.++++ ...-.....|+++|+..+......... .+.+..
T Consensus 299 ~~~~l~~~~l~~~~~~~~~~~l~~~~~~-~~l~~~~~~~~~Lvl--~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~ 375 (414)
T PF02897_consen 299 PNGRLVAVDLADPSPAEWWTVLIPEDED-VSLEDVSLFKDYLVL--SYRENGSSRLRVYDLDDGKESREIPLPEAGSVSG 375 (414)
T ss_dssp TT-EEEEEETTSTSGGGEEEEEE--SSS-EEEEEEEEETTEEEE--EEEETTEEEEEEEETT-TEEEEEEESSSSSEEEE
T ss_pred CCcEEEEecccccccccceeEEcCCCCc-eeEEEEEEECCEEEE--EEEECCccEEEEEECCCCcEEeeecCCcceEEec
Confidence 35677778776552 2234333332 333344555666332 233344558999999833433334333 234555
Q ss_pred EEEeeCCCEE
Q 024868 250 LSISLDGKYL 259 (261)
Q Consensus 250 ~~~s~dg~~l 259 (261)
+...+++..+
T Consensus 376 ~~~~~~~~~~ 385 (414)
T PF02897_consen 376 VSGDFDSDEL 385 (414)
T ss_dssp EES-TT-SEE
T ss_pred cCCCCCCCEE
Confidence 5555555443
No 370
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.75 E-value=0.011 Score=45.27 Aligned_cols=144 Identities=15% Similarity=0.111 Sum_probs=85.9
Q ss_pred CCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee---
Q 024868 73 PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD--- 149 (261)
Q Consensus 73 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~--- 149 (261)
..++.|+.|.++| +++++...... .........|..+...|+-+.+++- .|+.++++++........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~--------~~~i~~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~ 74 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK--------PTRILKLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAP 74 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc--------ceeEeecceEEEEEEecccCEEEEE-cCCccEEEEchhhcccccccc
Confidence 3578899998888 99999933322 1111223348999999977776666 469999999875443221
Q ss_pred -----------ccccCCceeEEE--EcCCC-CEEEEecCCCcEEEEEccCC-----cEEEEEeecCCCceEEEEEecCCC
Q 024868 150 -----------EPKAHKSVLDMD--FSLDS-EFLATTSTDGSARIWKTEDG-----VAWTFLTRNSDEKIELCRFSKDGT 210 (261)
Q Consensus 150 -----------~~~~~~~v~~~~--~s~~~-~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~p~~~ 210 (261)
.......+...+ -.+.+ ..|+.+ ....|.+|..... +..+.+... ..+..++|. ++
T Consensus 75 ~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~--~~ 149 (275)
T PF00780_consen 75 LAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFL--GN 149 (275)
T ss_pred ccccccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEe--CC
Confidence 011112333333 11233 344444 4558888887653 455555543 358899998 34
Q ss_pred cceEEEEEeeCCCcEEEEEECCCCeEE
Q 024868 211 KPFLFCTVQRGDKALLAVYDISTWNKI 237 (261)
Q Consensus 211 ~~~~~~~~~~~~d~~i~~~d~~~~~~~ 237 (261)
. ++.+.. ....+.|+.++...
T Consensus 150 ~-----i~v~~~-~~f~~idl~~~~~~ 170 (275)
T PF00780_consen 150 K-----ICVGTS-KGFYLIDLNTGSPS 170 (275)
T ss_pred E-----EEEEeC-CceEEEecCCCCce
Confidence 3 233333 34888898876543
No 371
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.74 E-value=0.0037 Score=39.82 Aligned_cols=101 Identities=12% Similarity=0.140 Sum_probs=62.7
Q ss_pred eEEEEEee---CC-cEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEE
Q 024868 115 QKCLSFSV---DG-SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT 190 (261)
Q Consensus 115 v~~~~~s~---~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~ 190 (261)
|+++++.. || +.|++|+.|..|++|+- .+.+..+ ...+.|.++.-... ..++.+..+|+|-+|+- .+.+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei-~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEI-TETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEE-ecccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 45566554 33 57999999999999973 3443333 33456777776655 56888889999999985 34444
Q ss_pred EEeecCCCceEEEEEec-C--CCcceEEEEEeeCCCcEEE
Q 024868 191 FLTRNSDEKIELCRFSK-D--GTKPFLFCTVQRGDKALLA 227 (261)
Q Consensus 191 ~~~~~~~~~v~~~~~~p-~--~~~~~~~~~~~~~~d~~i~ 227 (261)
..+..+. +.++++.. + |..- ++++-.+|.|-
T Consensus 76 RiKSK~~--~~~~~~~D~~gdG~~e----LI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSKNQ--VTSMAFYDINGDGVPE----LIVGWSNGKVE 109 (111)
T ss_pred eeccCCC--eEEEEEEcCCCCCceE----EEEEecCCeEE
Confidence 4443332 55555443 3 2221 46666666653
No 372
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.72 E-value=0.0032 Score=51.58 Aligned_cols=117 Identities=10% Similarity=0.095 Sum_probs=70.8
Q ss_pred CCCeEEEEEeeCC-----cEEEEeccCCeEEEEEccC-----ceEEeeccccC-C--c--eeEEEEcCCCCEEEEecCCC
Q 024868 112 AGPQKCLSFSVDG-----SRFAAGGVDGHLRIMHWPS-----LRIILDEPKAH-K--S--VLDMDFSLDSEFLATTSTDG 176 (261)
Q Consensus 112 ~~~v~~~~~s~~~-----~~l~~~~~d~~i~~~d~~~-----~~~~~~~~~~~-~--~--v~~~~~s~~~~~l~~~~~d~ 176 (261)
.+.|..+.|.|-+ .+||+ .....|.+|.+.. .+........- . + ...+.|+|....|+.-....
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d 134 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD 134 (671)
T ss_pred cceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence 3568999999942 34444 4777899998752 22221111111 1 1 35688999998888766655
Q ss_pred cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (261)
Q Consensus 177 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~ 233 (261)
.-.+++++.....-.......+.|.+.+|.+||+++ +++.+..=.-++||-..
T Consensus 135 vSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL----VVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL----VVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred eeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE----EEEeCCeEEEEEecCch
Confidence 545666654332222222334469999999999984 23333344578898543
No 373
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.71 E-value=0.0086 Score=46.29 Aligned_cols=151 Identities=13% Similarity=0.174 Sum_probs=84.5
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCc-eEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCC------
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDP-MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ------ 110 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~------ 110 (261)
....+|.+++.. ......+....+++ ..-++...+..++..+.+|.|+-.|+.......... ...+.
T Consensus 160 ~~v~Ld~~Gk~~---~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~---~~~~t~~e~~~ 233 (342)
T PF06433_consen 160 LTVTLDADGKEA---QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKP---WSLLTDAEKAD 233 (342)
T ss_dssp EEEEETSTSSEE---EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEE---EESS-HHHHHT
T ss_pred EEEEECCCCCEe---EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCc---ccccCcccccc
Confidence 445556555442 11122333333333 344555555566667899999999997765321110 11110
Q ss_pred --CCCCeEEEEEeeCCcEEEEec---c-----C--CeEEEEEccCceEEeeccccCCceeEEEEcCCCC-EEEEe-cCCC
Q 024868 111 --DAGPQKCLSFSVDGSRFAAGG---V-----D--GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE-FLATT-STDG 176 (261)
Q Consensus 111 --~~~~v~~~~~s~~~~~l~~~~---~-----d--~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~-~~d~ 176 (261)
..+...-+++++....|++.- . | ..|.++|+.+++.+.++.- ..++.++..+.+.+ +|++. ..++
T Consensus 234 ~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~ 312 (342)
T PF06433_consen 234 GWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDG 312 (342)
T ss_dssp TEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTT
T ss_pred CcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCC
Confidence 013345577777554444432 1 1 2488889999998776553 34688999999776 55544 4578
Q ss_pred cEEEEEccCCcEEEEEeec
Q 024868 177 SARIWKTEDGVAWTFLTRN 195 (261)
Q Consensus 177 ~i~iwd~~~~~~~~~~~~~ 195 (261)
.+.+||..+|+.++++..-
T Consensus 313 ~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 313 TLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EEEEEETTT--EEEEE---
T ss_pred eEEEEeCcCCcEEeehhcc
Confidence 9999999999999888743
No 374
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.71 E-value=0.018 Score=46.77 Aligned_cols=87 Identities=10% Similarity=0.101 Sum_probs=58.1
Q ss_pred EeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCc
Q 024868 120 FSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK 199 (261)
Q Consensus 120 ~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 199 (261)
++.+....+....++.+.+.+-...+. ....+++..++.||+++++|.-..+|.+.+.+..-.+....+.......
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~ 261 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSP 261 (410)
T ss_pred eecCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCC
Confidence 444555545544556666544322211 2234689999999999999999999999998876666666665554445
Q ss_pred eEEEEEecCCC
Q 024868 200 IELCRFSKDGT 210 (261)
Q Consensus 200 v~~~~~~p~~~ 210 (261)
...+.|+-+..
T Consensus 262 p~~~~WCG~da 272 (410)
T PF04841_consen 262 PKQMAWCGNDA 272 (410)
T ss_pred CcEEEEECCCc
Confidence 77888887654
No 375
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.70 E-value=0.014 Score=45.24 Aligned_cols=162 Identities=14% Similarity=0.098 Sum_probs=96.3
Q ss_pred CeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCe-EEEEEeeCCcEEEEeccCCeEEEEEccCceEE----eec
Q 024868 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQ-KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII----LDE 150 (261)
Q Consensus 76 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~----~~~ 150 (261)
+.+.+.+.||.+....+............ .......++ ..-+++..+..++..+.+|.|+-.|+...... ..+
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~--~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~ 225 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTK--VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL 225 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEE--ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred CceEEEecCCceEEEEECCCCCEeEeecc--ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccc
Confidence 45777789999999999855433322211 112222333 34455655555666678999999888654321 111
Q ss_pred cc-----c---CCceeEEEEcCCCCEEEEecC---CC-------cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcc
Q 024868 151 PK-----A---HKSVLDMDFSLDSEFLATTST---DG-------SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP 212 (261)
Q Consensus 151 ~~-----~---~~~v~~~~~s~~~~~l~~~~~---d~-------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 212 (261)
.. . .+.-.-+++++..+.|+..-. ++ .|.++|+.+++.+.++.... ++.++..+.+.+=+
T Consensus 226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~--~~~Si~Vsqd~~P~ 303 (342)
T PF06433_consen 226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH--PIDSIAVSQDDKPL 303 (342)
T ss_dssp S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE--EESEEEEESSSS-E
T ss_pred cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC--ccceEEEccCCCcE
Confidence 11 0 122345788876655554222 22 48899999999999988543 47899999988742
Q ss_pred eEEEEEeeCCCcEEEEEECCCCeEEeeeeccC
Q 024868 213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244 (261)
Q Consensus 213 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~ 244 (261)
| ......++.+.+||..+|+.+..+...+
T Consensus 304 -L--~~~~~~~~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 304 -L--YALSAGDGTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp -E--EEEETTTTEEEEEETTT--EEEEE---S
T ss_pred -E--EEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence 2 2344567899999999999987776544
No 376
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.67 E-value=0.01 Score=43.06 Aligned_cols=136 Identities=14% Similarity=0.150 Sum_probs=85.0
Q ss_pred CCCceEEEECCCCCeEEEEec---------CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEe-cc
Q 024868 63 EGDPMTIAVNPSGDDFVCSTT---------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GV 132 (261)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~ 132 (261)
..+...-..+|+|++++-.-. .|.++.|-....-. .....-.--+.++|+.+.+.+... +.
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~---------~i~~~v~IsNgl~Wd~d~K~fY~iDsl 178 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVE---------LIWNCVGISNGLAWDSDAKKFYYIDSL 178 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCce---------eeehhccCCccccccccCcEEEEEccC
Confidence 345667778999998442211 24555554432211 000111233678999887766655 45
Q ss_pred CCeEEEEE--ccCceE-----Eeeccc----cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceE
Q 024868 133 DGHLRIMH--WPSLRI-----ILDEPK----AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIE 201 (261)
Q Consensus 133 d~~i~~~d--~~~~~~-----~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 201 (261)
+-+|.-|| ..++.. +..+.. .+.....++...+|++.++.-..++|...|..+|+.+.++..... .++
T Consensus 179 n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~-qit 257 (310)
T KOG4499|consen 179 NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTP-QIT 257 (310)
T ss_pred ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCC-ceE
Confidence 66776677 444432 222222 111234566677888888888889999999999999999988766 599
Q ss_pred EEEEecC
Q 024868 202 LCRFSKD 208 (261)
Q Consensus 202 ~~~~~p~ 208 (261)
+++|--.
T Consensus 258 sccFgGk 264 (310)
T KOG4499|consen 258 SCCFGGK 264 (310)
T ss_pred EEEecCC
Confidence 9999644
No 377
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.00092 Score=53.79 Aligned_cols=134 Identities=15% Similarity=0.143 Sum_probs=88.3
Q ss_pred EeeCCcEEEE-eccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCE-------EEEecCCCcEEEEEccC-Cc-EE
Q 024868 120 FSVDGSRFAA-GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEF-------LATTSTDGSARIWKTED-GV-AW 189 (261)
Q Consensus 120 ~s~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~-------l~~~~~d~~i~iwd~~~-~~-~~ 189 (261)
...+.++|+. +.....++-.|++.|+.+....-+.. |.-+.+.|+.+. -+.|-.|+.|.-||.+- ++ .+
T Consensus 341 ~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 341 HRADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred hccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 3344555444 44556688899999998766554444 777888886542 23455688899999883 32 22
Q ss_pred EEEeecC---CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 190 TFLTRNS---DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 190 ~~~~~~~---~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
...+.+. .....|.+-..+|. ++.++.+|.|++||.-....-..+++.+.+|..+..+.||++|+
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~sG~------IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil 487 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTESGY------IVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWIL 487 (644)
T ss_pred eeeeccccccccccceeeecCCce------EEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEE
Confidence 2222221 11245555555665 58899999999999733223334677889999999999999875
No 378
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.63 E-value=0.026 Score=47.81 Aligned_cols=194 Identities=15% Similarity=0.175 Sum_probs=100.6
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC-----cEEEEEEe
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG-----GCKLFEVY 93 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~~~~ 93 (261)
+.+.++||.+. +....-.++.||+....+...+ .+........... -+|...++|+.|| ++-.||..
T Consensus 333 ~~lYv~GG~~~--~~~~l~~ve~YD~~~~~W~~~a----~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~ 404 (571)
T KOG4441|consen 333 GKLYVVGGYDS--GSDRLSSVERYDPRTNQWTPVA----PMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPV 404 (571)
T ss_pred CEEEEEccccC--CCcccceEEEecCCCCceeccC----CccCccccceeEE--ECCEEEEEeccccccccccEEEecCC
Confidence 45777888774 2333447899999988873311 1221222222222 2677888888885 35556665
Q ss_pred CCccccceeeeeCCCCCCCCCeEEEEE-eeCCcEEEEeccCC------eEEEEEccCceEEeeccccCCc-eeEEEEcCC
Q 024868 94 GGATDINLLAKKMPPLQDAGPQKCLSF-SVDGSRFAAGGVDG------HLRIMHWPSLRIILDEPKAHKS-VLDMDFSLD 165 (261)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~d~------~i~~~d~~~~~~~~~~~~~~~~-v~~~~~s~~ 165 (261)
+.+- .. ...+. .+...... .-+|+..++|+.++ ++..||..+..-.....-.... -..++ .-+
T Consensus 405 ~~~W--~~----va~m~--~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~ 475 (571)
T KOG4441|consen 405 TNKW--TP----VAPML--TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLN 475 (571)
T ss_pred CCcc--cc----cCCCC--cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEE-EEC
Confidence 5442 10 11111 12222222 33788888888554 4778887765532211111111 11222 236
Q ss_pred CCEEEEecCCC-----cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCc-----EEEEEECCCCe
Q 024868 166 SEFLATTSTDG-----SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA-----LLAVYDISTWN 235 (261)
Q Consensus 166 ~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~-----~i~~~d~~~~~ 235 (261)
+.+.+.|+.|+ +|..||..+.+....-.... +...+.....+..+| +.++.|| +|..||..+.+
T Consensus 476 ~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~--~rs~~g~~~~~~~ly----~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 476 GKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS--PRSAVGVVVLGGKLY----AVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred CEEEEECCccCCCccceEEEEcCCCCceeEcccCcc--ccccccEEEECCEEE----EEecccCccccceeEEcCCCCCc
Confidence 77788888776 37778888766544321111 122222333333333 5555554 67788876654
No 379
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.56 E-value=0.012 Score=45.56 Aligned_cols=127 Identities=16% Similarity=0.181 Sum_probs=78.3
Q ss_pred eEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-CcEEEEEEeC--CccccceeeeeCCCCCCCC
Q 024868 37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-GGCKLFEVYG--GATDINLLAKKMPPLQDAG 113 (261)
Q Consensus 37 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~~~~~--~~~~~~~~~~~~~~~~~~~ 113 (261)
-.+|.+++.... ...+..+-...+.++||||++.|..+... +.|..|++.. ...... ......-...+
T Consensus 143 G~lyr~~p~g~~-------~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~--~~~~~~~~~~G 213 (307)
T COG3386 143 GSLYRVDPDGGV-------VRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGR--RGFVDFDEEPG 213 (307)
T ss_pred ceEEEEcCCCCE-------EEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCc--ceEEEccCCCC
Confidence 378888875433 33455555567899999999988776554 7788887763 111010 00011111235
Q ss_pred CeEEEEEeeCCcEEEEeccCC-eEEEEEccCceEEeeccccCCceeEEEE-cCCCCEEEEec
Q 024868 114 PQKCLSFSVDGSRFAAGGVDG-HLRIMHWPSLRIILDEPKAHKSVLDMDF-SLDSEFLATTS 173 (261)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~ 173 (261)
..-.++...+|.+-+++...| .|..|+.. ++.+....-....+.+++| .|+.+.|+..+
T Consensus 214 ~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 214 LPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 556677888888775554444 89999976 7777666655567888888 44555554443
No 380
>PHA02713 hypothetical protein; Provisional
Probab=97.56 E-value=0.014 Score=49.43 Aligned_cols=194 Identities=9% Similarity=0.032 Sum_probs=92.8
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC-----cEEEEEEe
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG-----GCKLFEVY 93 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~~~~ 93 (261)
+.+.++||.+... ...-.++.||+.+..+...+ .+.........+. -+|+..+.|+.++ .+..||..
T Consensus 304 ~~IYviGG~~~~~--~~~~~v~~Yd~~~n~W~~~~----~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~ 375 (557)
T PHA02713 304 NEIIIAGGYNFNN--PSLNKVYKINIENKIHVELP----PMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMG 375 (557)
T ss_pred CEEEEEcCCCCCC--CccceEEEEECCCCeEeeCC----CCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECC
Confidence 3466666643211 11225788998887652211 1111111122222 2677777777653 46778876
Q ss_pred CCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC-----------------------eEEEEEccCceEEeec
Q 024868 94 GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-----------------------HLRIMHWPSLRIILDE 150 (261)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-----------------------~i~~~d~~~~~~~~~~ 150 (261)
+..- .. ...+.....-.++ ..-+++..+.|+.++ .+..||..+.+-....
T Consensus 376 ~~~W--~~----~~~mp~~r~~~~~-~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~ 448 (557)
T PHA02713 376 DDKW--KM----LPDMPIALSSYGM-CVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP 448 (557)
T ss_pred CCeE--EE----CCCCCcccccccE-EEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC
Confidence 5532 11 1122211111111 123688888887542 4677887665432111
Q ss_pred cccCCceeEEEEcCCCCEEEEecCC------CcEEEEEccC-CcEE--EEEeecCCCceEEEEEecCCCcceEEEEEeeC
Q 024868 151 PKAHKSVLDMDFSLDSEFLATTSTD------GSARIWKTED-GVAW--TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG 221 (261)
Q Consensus 151 ~~~~~~v~~~~~s~~~~~l~~~~~d------~~i~iwd~~~-~~~~--~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~ 221 (261)
.-.......-...-++++.+.|+.+ ..+..||..+ .+-. ..+..... ..+++. -+|+. .+.|+
T Consensus 449 ~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~--~~~~~~-~~~~i-----yv~Gg 520 (557)
T PHA02713 449 NFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS--ALHTIL-HDNTI-----MMLHC 520 (557)
T ss_pred CCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc--cceeEE-ECCEE-----EEEee
Confidence 1111111111122356777777654 2467899887 4433 22221111 112222 25554 35677
Q ss_pred CCc--EEEEEECCCCe
Q 024868 222 DKA--LLAVYDISTWN 235 (261)
Q Consensus 222 ~d~--~i~~~d~~~~~ 235 (261)
.++ .+..||..+.+
T Consensus 521 ~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 521 YESYMLQDTFNVYTYE 536 (557)
T ss_pred ecceeehhhcCccccc
Confidence 676 78888887655
No 381
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.50 E-value=0.006 Score=45.54 Aligned_cols=142 Identities=17% Similarity=0.131 Sum_probs=90.9
Q ss_pred eEEEEEeeC-CcEEEEeccCCe-EEEEEccCceEEeeccccCCc--eeEEEEcCCCCEEEEecCC-----CcEEEEEccC
Q 024868 115 QKCLSFSVD-GSRFAAGGVDGH-LRIMHWPSLRIILDEPKAHKS--VLDMDFSLDSEFLATTSTD-----GSARIWKTED 185 (261)
Q Consensus 115 v~~~~~s~~-~~~l~~~~~d~~-i~~~d~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~d-----~~i~iwd~~~ 185 (261)
...++++|. .+-++.+-.-|+ ..++|....+....+....+. .-.=.|||||++|+..-.| |.|-|||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 345788884 455666665554 667888776665444433331 2345699999999986554 6799999985
Q ss_pred C-cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeC----------------CCcEEEEEECCCCeEEeeee----ccC
Q 024868 186 G-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG----------------DKALLAVYDISTWNKIGHKR----LLR 244 (261)
Q Consensus 186 ~-~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~----------------~d~~i~~~d~~~~~~~~~~~----~~~ 244 (261)
+ +.+-++..+.- ....+.|.+||+.+. ++.++ ..-.+.+.|..+|+.+.+.. .+.
T Consensus 150 ~fqrvgE~~t~Gi-GpHev~lm~DGrtlv---vanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~ 225 (366)
T COG3490 150 GFQRVGEFSTHGI-GPHEVTLMADGRTLV---VANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ 225 (366)
T ss_pred ccceecccccCCc-CcceeEEecCCcEEE---EeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh
Confidence 3 34555665544 377899999999731 22221 12246677777777654332 234
Q ss_pred cCeeEEEEeeCCCEEe
Q 024868 245 KPASVLSISLDGKYLA 260 (261)
Q Consensus 245 ~~v~~~~~s~dg~~la 260 (261)
..+..++..+||+.++
T Consensus 226 lSiRHld~g~dgtvwf 241 (366)
T COG3490 226 LSIRHLDIGRDGTVWF 241 (366)
T ss_pred cceeeeeeCCCCcEEE
Confidence 5788899999988653
No 382
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.49 E-value=0.027 Score=43.36 Aligned_cols=170 Identities=16% Similarity=0.201 Sum_probs=86.3
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEE
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC 117 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 117 (261)
.|+.=......+ ........+.+..+.-++||++++++.....+.-|+-.... .. ........++..
T Consensus 125 ~iy~T~DgG~tW------~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~--w~-----~~~r~~~~riq~ 191 (302)
T PF14870_consen 125 AIYRTTDGGKTW------QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT--WQ-----PHNRNSSRRIQS 191 (302)
T ss_dssp -EEEESSTTSSE------EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS---E-----EEE--SSS-EEE
T ss_pred cEEEeCCCCCCe------eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc--ce-----EEccCccceehh
Confidence 566555455554 33445556788899999999988887544434455543211 11 111112468999
Q ss_pred EEEeeCCcEEEEeccCCeEEEEEccCceEEeec--cc--cCC-ceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEE
Q 024868 118 LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE--PK--AHK-SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL 192 (261)
Q Consensus 118 ~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--~~--~~~-~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 192 (261)
|.|+|++.+.+.+ ..|.|+.=+.......... .. ..+ .+..++|.+++...++++. |. .+...+.|+.-+..
T Consensus 192 ~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~-l~~S~DgGktW~~~ 268 (302)
T PF14870_consen 192 MGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GT-LLVSTDGGKTWQKD 268 (302)
T ss_dssp EEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T--EEEESSTTSS-EE-
T ss_pred ceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-cc-EEEeCCCCccceEC
Confidence 9999998877766 8888888762222211111 11 122 4899999999888887764 43 34455566655444
Q ss_pred ee--cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEE
Q 024868 193 TR--NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY 229 (261)
Q Consensus 193 ~~--~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~ 229 (261)
.. ......+.+.|.++.+- +.-+.+|.|--|
T Consensus 269 ~~~~~~~~n~~~i~f~~~~~g------f~lG~~G~ll~~ 301 (302)
T PF14870_consen 269 RVGENVPSNLYRIVFVNPDKG------FVLGQDGVLLRY 301 (302)
T ss_dssp GGGTTSSS---EEEEEETTEE------EEE-STTEEEEE
T ss_pred ccccCCCCceEEEEEcCCCce------EEECCCcEEEEe
Confidence 33 22334788999877664 556677776544
No 383
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.48 E-value=0.004 Score=46.43 Aligned_cols=106 Identities=15% Similarity=0.172 Sum_probs=69.0
Q ss_pred ceeEEEEcCC-CCEEEEecCCC-cEEEEEccCCcEEEEEeecCCCc-eEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868 156 SVLDMDFSLD-SEFLATTSTDG-SARIWKTEDGVAWTFLTRNSDEK-IELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (261)
Q Consensus 156 ~v~~~~~s~~-~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~ 232 (261)
.-..++++|. .+-++.+-.-| ...++|..+.+...++....+.. .-.-.|||||+++|..---....-|.|-+||.+
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 3456788884 44455555444 46789998887766665433221 223469999998432100011234789999998
Q ss_pred CC-eEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 233 TW-NKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 233 ~~-~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
.+ +.+.++..++-....+.|.+||+.|++
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvv 178 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVV 178 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEE
Confidence 54 356677788878899999999999874
No 384
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.0017 Score=56.51 Aligned_cols=102 Identities=25% Similarity=0.300 Sum_probs=73.3
Q ss_pred CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecccc
Q 024868 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153 (261)
Q Consensus 74 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 153 (261)
.+..++.|+..|.+-..|....-.+ ........++|.+++|+.+|+.++.|-.+|.|.+||+.+++....+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~------~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGP------LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH 171 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccch------hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec
Confidence 4556888888898988888764221 1112223579999999999999999999999999999988876666555
Q ss_pred CC---ceeEEEEcCCCCEEEEecCCCcEEEEEc
Q 024868 154 HK---SVLDMDFSLDSEFLATTSTDGSARIWKT 183 (261)
Q Consensus 154 ~~---~v~~~~~s~~~~~l~~~~~d~~i~iwd~ 183 (261)
.. .+..+.+..++..++++...|. +|.+
T Consensus 172 ~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 172 GAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 44 3445555556667788777675 4543
No 385
>PHA03098 kelch-like protein; Provisional
Probab=97.42 E-value=0.06 Score=45.53 Aligned_cols=196 Identities=14% Similarity=0.119 Sum_probs=91.4
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-----CcEEEEEEe
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-----GGCKLFEVY 93 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~~ 93 (261)
..+++.||.++.... .-.++.||+.+..+...+. +.........+.+ +++.++.|+.+ ..+..||..
T Consensus 295 ~~lyv~GG~~~~~~~--~~~v~~yd~~~~~W~~~~~----~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~ 366 (534)
T PHA03098 295 NVIYFIGGMNKNNLS--VNSVVSYDTKTKSWNKVPE----LIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPG 366 (534)
T ss_pred CEEEEECCCcCCCCe--eccEEEEeCCCCeeeECCC----CCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCC
Confidence 346667765432111 1257889998877633221 1111122222322 56677777765 346667766
Q ss_pred CCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC------CeEEEEEccCceEEeeccccCCceeEEEEcCCCC
Q 024868 94 GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE 167 (261)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 167 (261)
+..- .. ...+.....-.+. ..-+++.++.|+.+ ..+..||..+.+-..............+...+++
T Consensus 367 ~~~W--~~----~~~lp~~r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~ 439 (534)
T PHA03098 367 ESKW--RE----EPPLIFPRYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGK 439 (534)
T ss_pred CCce--ee----CCCcCcCCccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCE
Confidence 5432 11 1111111111112 23467777777732 3578889876543211110111111112233566
Q ss_pred EEEEecCC--------CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCC-----CcEEEEEECCCC
Q 024868 168 FLATTSTD--------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-----KALLAVYDISTW 234 (261)
Q Consensus 168 ~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~-----d~~i~~~d~~~~ 234 (261)
.++.|+.+ ..+.+||..+++....-.......-.+++ .-+++. | +.|+. .+.+.+||..+.
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~i-y----v~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC-IFNNKI-Y----VVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEE-EECCEE-E----EEcCCcCCcccceeEEEeCCCC
Confidence 66777643 23888998876543321111111011121 225553 2 33443 257899998875
Q ss_pred e
Q 024868 235 N 235 (261)
Q Consensus 235 ~ 235 (261)
+
T Consensus 514 ~ 514 (534)
T PHA03098 514 T 514 (534)
T ss_pred E
Confidence 4
No 386
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.38 E-value=0.021 Score=47.06 Aligned_cols=121 Identities=8% Similarity=0.082 Sum_probs=71.0
Q ss_pred CCceEEEECCC----CCeEEEEecCCcEEEEEEeCCccc-cceeeeeCCCCCCCCC--eEEEEEeeCCcEEEEeccCCeE
Q 024868 64 GDPMTIAVNPS----GDDFVCSTTNGGCKLFEVYGGATD-INLLAKKMPPLQDAGP--QKCLSFSVDGSRFAAGGVDGHL 136 (261)
Q Consensus 64 ~~v~~~~~~~~----~~~l~~~~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~d~~i 136 (261)
..|..+.|.|- -..|++.-....|.+|.+...... .+.+......+...-+ ...+.|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 45889999984 323444456778999999733221 1111111111111111 2567899988877776544433
Q ss_pred EEEEccCce-EEeeccccCCceeEEEEcCCCCEEEEec-CCCcEEEEEcc
Q 024868 137 RIMHWPSLR-IILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTE 184 (261)
Q Consensus 137 ~~~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~ 184 (261)
.+++++... .+..-....+.|.|.+|.+||+.|+.+- ..=.-+|||-.
T Consensus 137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 445554332 3333345667899999999999877653 23456788843
No 387
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.38 E-value=0.034 Score=41.88 Aligned_cols=170 Identities=14% Similarity=0.128 Sum_probs=106.3
Q ss_pred eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCc
Q 024868 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (261)
Q Consensus 7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 86 (261)
|.++.|+|+ .+.+++++.... .+...+.++.-+ ....+.+- .....+.+..++++.++--.++.
T Consensus 88 vS~LTynp~--~rtLFav~n~p~--------~iVElt~~Gdli-----rtiPL~g~-~DpE~Ieyig~n~fvi~dER~~~ 151 (316)
T COG3204 88 VSSLTYNPD--TRTLFAVTNKPA--------AIVELTKEGDLI-----RTIPLTGF-SDPETIEYIGGNQFVIVDERDRA 151 (316)
T ss_pred ccceeeCCC--cceEEEecCCCc--------eEEEEecCCceE-----EEeccccc-CChhHeEEecCCEEEEEehhcce
Confidence 778889886 366777777766 777777766543 23334442 34567888888888887777899
Q ss_pred EEEEEEeCCccccceee--eeCCCCCC-CCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeec-----cccC----
Q 024868 87 CKLFEVYGGATDINLLA--KKMPPLQD-AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE-----PKAH---- 154 (261)
Q Consensus 87 i~i~~~~~~~~~~~~~~--~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-----~~~~---- 154 (261)
++++.+........... -......+ ......++|+|..+.|.++-...-+.||.+......... ....
T Consensus 152 l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f 231 (316)
T COG3204 152 LYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLF 231 (316)
T ss_pred EEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceE
Confidence 99998876643221111 11222222 456788999998888888867777777776533311111 1111
Q ss_pred -CceeEEEEcC-CCCEEEEecCCCcEEEEEccCCcEEEEEe
Q 024868 155 -KSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLT 193 (261)
Q Consensus 155 -~~v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 193 (261)
..+.++.|++ .+.+++-+..++.+.-.|.. |+++..+.
T Consensus 232 ~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ls 271 (316)
T COG3204 232 VLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLS 271 (316)
T ss_pred eeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEE
Confidence 2467788887 45566666677778777764 55555443
No 388
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=97.35 E-value=0.029 Score=47.45 Aligned_cols=108 Identities=17% Similarity=0.107 Sum_probs=71.1
Q ss_pred EEEeeCCcEEEEeccCCeEEEEEccCceEEeec-cccCCceeEEEE--cCCCCEEEEecCCCcEEEEEcc---------C
Q 024868 118 LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE-PKAHKSVLDMDF--SLDSEFLATTSTDGSARIWKTE---------D 185 (261)
Q Consensus 118 ~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~--s~~~~~l~~~~~d~~i~iwd~~---------~ 185 (261)
+.-|.-++..++-+....+.|||.+.+...... ...++.|.+++| .|+++.+++.+....|.++.-. +
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~ 114 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS 114 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence 334444444444445567999999877643322 244668999999 4689999998899999998642 1
Q ss_pred CcEEEEE--eecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868 186 GVAWTFL--TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (261)
Q Consensus 186 ~~~~~~~--~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~ 232 (261)
..+++.+ ..+...+|.+..|.++|.. ++.+ .+++.|+|-.
T Consensus 115 w~~i~~i~i~~~T~h~Igds~Wl~~G~L-----vV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 115 WAPIRKIDISSHTPHPIGDSIWLKDGTL-----VVGS--GNQLFVFDKW 156 (631)
T ss_pred cceeEEEEeecCCCCCccceeEecCCeE-----EEEe--CCEEEEECCC
Confidence 2233333 3344457999999999986 3333 3468898854
No 389
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.33 E-value=0.03 Score=44.24 Aligned_cols=137 Identities=12% Similarity=-0.016 Sum_probs=71.9
Q ss_pred EEEEeeCCcEEEEecc---CCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEe
Q 024868 117 CLSFSVDGSRFAAGGV---DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT 193 (261)
Q Consensus 117 ~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 193 (261)
.=+|.+||+.|+.++. ...+++.|+.+++..+.............++|+++.++-.-.+..++-.|+++.+....+.
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence 3467889977776653 4468888999988765544333334456678988887665556789999999987655555
Q ss_pred ecCCCceEEEEEe--cCCCcceEEEEEe-------------------eCCCcEEEEEECCCCeEEeeeeccCcCeeEEEE
Q 024868 194 RNSDEKIELCRFS--KDGTKPFLFCTVQ-------------------RGDKALLAVYDISTWNKIGHKRLLRKPASVLSI 252 (261)
Q Consensus 194 ~~~~~~v~~~~~~--p~~~~~~~~~~~~-------------------~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 252 (261)
.... .+....|. .|+.. ++. +.. +.-...|.-.|+++|+.. .+......+..+.|
T Consensus 120 ~p~~-~~g~gt~v~n~d~t~-~~g-~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~-~v~~~~~wlgH~~f 195 (386)
T PF14583_consen 120 VPDD-WKGYGTWVANSDCTK-LVG-IEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK-VVFEDTDWLGHVQF 195 (386)
T ss_dssp --TT-EEEEEEEEE-TTSSE-EEE-EEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE-EEEEESS-EEEEEE
T ss_pred CCcc-cccccceeeCCCccE-EEE-EEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee-EEEecCccccCccc
Confidence 4433 35445564 34554 211 221 122346777888888754 33334566677778
Q ss_pred eeCCC
Q 024868 253 SLDGK 257 (261)
Q Consensus 253 s~dg~ 257 (261)
||...
T Consensus 196 sP~dp 200 (386)
T PF14583_consen 196 SPTDP 200 (386)
T ss_dssp ETTEE
T ss_pred CCCCC
Confidence 87543
No 390
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.32 E-value=0.0013 Score=34.99 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=29.5
Q ss_pred CceeEEEEcCCCCEEEEecCCCcEEEEEccCCcE
Q 024868 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA 188 (261)
Q Consensus 155 ~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~ 188 (261)
..|..++|+|...+||.++.+|.|.++.+ +++.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 46999999999999999999999999998 5554
No 391
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.29 E-value=0.043 Score=43.96 Aligned_cols=140 Identities=11% Similarity=0.137 Sum_probs=74.0
Q ss_pred CCceEEEECCCCCeEEEEe-----------cCC-cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec
Q 024868 64 GDPMTIAVNPSGDDFVCST-----------TNG-GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131 (261)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~-----------~dg-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 131 (261)
.....++|.++|+.+++-. ..+ .|.+++-.++.-..... ............+++.+++ .++ +.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~---~vfa~~l~~p~Gi~~~~~G-lyV-~~ 88 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKS---NVFAEELSMVTGLAVAVGG-VYV-AT 88 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCccee---EEeecCCCCccceeEecCC-EEE-eC
Confidence 4567899999998776642 123 56666543322111100 0111122345789999988 444 43
Q ss_pred cCCeEEEE-EccC-------ceEEee-ccc----cCCceeEEEEcCCCCEEEEecCC-------------------CcEE
Q 024868 132 VDGHLRIM-HWPS-------LRIILD-EPK----AHKSVLDMDFSLDSEFLATTSTD-------------------GSAR 179 (261)
Q Consensus 132 ~d~~i~~~-d~~~-------~~~~~~-~~~----~~~~v~~~~~s~~~~~l~~~~~d-------------------~~i~ 179 (261)
.. .|..+ |... .+.+.. +.. ++.....+.|.|||.+.++.+.. +.|.
T Consensus 89 ~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~ 167 (367)
T TIGR02604 89 PP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLF 167 (367)
T ss_pred CC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEE
Confidence 44 34434 4321 112222 211 12347789999999876654421 3455
Q ss_pred EEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868 180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (261)
Q Consensus 180 iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 211 (261)
-+|..+++. ..+..... ....++|+|+|+.
T Consensus 168 r~~pdg~~~-e~~a~G~r-np~Gl~~d~~G~l 197 (367)
T TIGR02604 168 RYNPDGGKL-RVVAHGFQ-NPYGHSVDSWGDV 197 (367)
T ss_pred EEecCCCeE-EEEecCcC-CCccceECCCCCE
Confidence 555544443 33332222 3678999999986
No 392
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.26 E-value=0.037 Score=44.31 Aligned_cols=141 Identities=10% Similarity=0.005 Sum_probs=76.0
Q ss_pred CCeEEEEEeeCCcEEEEec-----------cCC-eEEEEEccC--ceE--EeeccccCCceeEEEEcCCCCEEEEecCCC
Q 024868 113 GPQKCLSFSVDGSRFAAGG-----------VDG-HLRIMHWPS--LRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176 (261)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~-----------~d~-~i~~~d~~~--~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 176 (261)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++. ...+...-.....+++.++| +++ ++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 3456789999999877642 223 677776432 221 12222223356889999988 444 44443
Q ss_pred cEEEEEccC-----CcEEE---EEeec---CCCceEEEEEecCCCcceEEEEEeeC------------------CCcEEE
Q 024868 177 SARIWKTED-----GVAWT---FLTRN---SDEKIELCRFSKDGTKPFLFCTVQRG------------------DKALLA 227 (261)
Q Consensus 177 ~i~iwd~~~-----~~~~~---~~~~~---~~~~v~~~~~~p~~~~~~~~~~~~~~------------------~d~~i~ 227 (261)
..++.|... ++... .+... .......++|.|||.. |+ ..++ ..+.|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~L-Yv---~~G~~~~~~~~~~~~~~~~~~~~~g~i~ 167 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWL-YF---NHGNTLASKVTRPGTSDESRQGLGGGLF 167 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCE-EE---ecccCCCceeccCCCccCcccccCceEE
Confidence 333334431 12111 12111 1123678999999975 32 2221 115567
Q ss_pred EEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 228 ~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
-+|..+++.. .+...-.....++|+|+|++++
T Consensus 168 r~~pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~ 199 (367)
T TIGR02604 168 RYNPDGGKLR-VVAHGFQNPYGHSVDSWGDVFF 199 (367)
T ss_pred EEecCCCeEE-EEecCcCCCccceECCCCCEEE
Confidence 7777655433 2222223456899999998765
No 393
>PRK10115 protease 2; Provisional
Probab=97.25 E-value=0.058 Score=46.93 Aligned_cols=113 Identities=6% Similarity=-0.089 Sum_probs=68.9
Q ss_pred CeEEEEEeeCCcEEEEecc-C----CeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCC------CcEEEEE
Q 024868 114 PQKCLSFSVDGSRFAAGGV-D----GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD------GSARIWK 182 (261)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~~-d----~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------~~i~iwd 182 (261)
.+..+.||||+++|+.+.. + ..+++.|+.+++.+....... . ..++|++|++.|+....+ ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4677889999999887642 2 258888988776332222111 1 469999999866654332 3678888
Q ss_pred ccCC--cEEEEEeecCCCceE-EEEEecCCCcceEEEEEeeCCCcEEEEEEC
Q 024868 183 TEDG--VAWTFLTRNSDEKIE-LCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231 (261)
Q Consensus 183 ~~~~--~~~~~~~~~~~~~v~-~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~ 231 (261)
+.++ +....+..... ... ....+.++++++ .-.....++.+.+++.
T Consensus 206 lgt~~~~d~lv~~e~~~-~~~~~~~~s~d~~~l~--i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 206 IGTPASQDELVYEEKDD-TFYVSLHKTTSKHYVV--IHLASATTSEVLLLDA 254 (686)
T ss_pred CCCChhHCeEEEeeCCC-CEEEEEEEcCCCCEEE--EEEECCccccEEEEEC
Confidence 8877 33333433222 233 333344788643 2345556678999995
No 394
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.25 E-value=0.094 Score=44.16 Aligned_cols=76 Identities=13% Similarity=0.059 Sum_probs=46.0
Q ss_pred CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCe-eEEEEee
Q 024868 176 GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPA-SVLSISL 254 (261)
Q Consensus 176 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v-~~~~~s~ 254 (261)
+.+.-+|+.+|+...+....... ..+. ..-.+.. ++.+..+|.++.+|.++|+.+.......... .-+.+.-
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~-~~~~-l~t~g~l-----vf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~ 513 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPL-WGGV-LATAGDL-----VFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQ 513 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCC-CCcc-eEECCcE-----EEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEe
Confidence 45777888888877766533221 1121 2223443 3557789999999999999987666543221 2244556
Q ss_pred CCCE
Q 024868 255 DGKY 258 (261)
Q Consensus 255 dg~~ 258 (261)
+|+.
T Consensus 514 ~G~q 517 (527)
T TIGR03075 514 DGKQ 517 (527)
T ss_pred CCEE
Confidence 7764
No 395
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.0055 Score=53.96 Aligned_cols=146 Identities=10% Similarity=-0.038 Sum_probs=91.1
Q ss_pred CceEEEECCCCCeEEEEe--cCCcEEEEEEeCCccccce----eeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCCeEE
Q 024868 65 DPMTIAVNPSGDDFVCST--TNGGCKLFEVYGGATDINL----LAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLR 137 (261)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~--~dg~i~i~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~ 137 (261)
.+..+..++|+...++.. ++-.|+.||++.-...... +..............++.|+|.- ...+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 466667778877655443 3447888999765432211 11111112223455788899843 3455666899998
Q ss_pred EEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee---cCCCceEEEEEecCCCc
Q 024868 138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR---NSDEKIELCRFSKDGTK 211 (261)
Q Consensus 138 ~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~ 211 (261)
+..+................++++|+|.|+.++.|-..|.+.-|-.. .+....+.. .....|.+++|...-.+
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeE
Confidence 88765444333333334468999999999999999999998887653 343333322 22356899999876655
No 396
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.22 E-value=0.0017 Score=34.55 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=28.3
Q ss_pred CCCceEEEECCCCCeEEEEecCCcEEEEEEe
Q 024868 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY 93 (261)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~ 93 (261)
...|..++|+|..+.||.+..+|.|.++++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3569999999999999999999999999994
No 397
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.21 E-value=0.055 Score=40.83 Aligned_cols=189 Identities=11% Similarity=0.071 Sum_probs=112.9
Q ss_pred ecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEE
Q 024868 59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI 138 (261)
Q Consensus 59 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~ 138 (261)
..+-+..+.++.|+|+.+.|++......-.++=-..++.... .++........+.+.-+|+++++--.++.+.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirt------iPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~ 154 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRT------IPLTGFSDPETIEYIGGNQFVIVDERDRALYL 154 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEE------ecccccCChhHeEEecCCEEEEEehhcceEEE
Confidence 344455699999999999888877666555553333432111 11222334456778778888777777888888
Q ss_pred EEccCceEEee---------cccc-CCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcE-E--EEEeecC------CCc
Q 024868 139 MHWPSLRIILD---------EPKA-HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-W--TFLTRNS------DEK 199 (261)
Q Consensus 139 ~d~~~~~~~~~---------~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~-~--~~~~~~~------~~~ 199 (261)
+.+........ ...+ +.....++|+|..+.|..+=.-+-+.||....+.. + .....+. -..
T Consensus 155 ~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~D 234 (316)
T COG3204 155 FTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLD 234 (316)
T ss_pred EEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeec
Confidence 87764422111 1112 44688999999888777776666677776653321 1 0000000 013
Q ss_pred eEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccC---------cCeeEEEEeeCCCE
Q 024868 200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR---------KPASVLSISLDGKY 258 (261)
Q Consensus 200 v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~---------~~v~~~~~s~dg~~ 258 (261)
+.++.|++....+ ++.+.+++.+.-.|.. |+.+..+.... ...-.++..++|..
T Consensus 235 vSgl~~~~~~~~L----LVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~l 297 (316)
T COG3204 235 VSGLEFNAITNSL----LVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNL 297 (316)
T ss_pred cccceecCCCCcE----EEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCE
Confidence 6778898876663 4667788888888875 34343333222 12345777777764
No 398
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.17 E-value=0.088 Score=42.25 Aligned_cols=237 Identities=11% Similarity=0.061 Sum_probs=96.5
Q ss_pred eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEEC-----------CCCCeEEEEe-cCCcE
Q 024868 20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVN-----------PSGDDFVCST-TNGGC 87 (261)
Q Consensus 20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~~~l~~~~-~dg~i 87 (261)
.++++-..++...-+..+.....|++..... +-.....++.-.+.....-|+ .+.++|+..+ .+++|
T Consensus 22 ~YV~~~~~~~~~~~pD~LatVDvdP~S~tYg-qVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrI 100 (461)
T PF05694_consen 22 LYVWCLYPGTGIDKPDYLATVDVDPDSPTYG-QVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRI 100 (461)
T ss_dssp EEEEEE-TTTT-----EEEEEE--TTSTTTT-SEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--E
T ss_pred EEEEeecCCCCCCCCCeEEEEECCCCCCCcc-cEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcE
Confidence 3444443333223344455555666554331 112223344333456666665 2456777666 56889
Q ss_pred EEEEEeCCccccceeeeeCC-CCC---CCCCeEEEEEeeCCcEEEEec------cCCeEEEEEccCceEEeeccccCC--
Q 024868 88 KLFEVYGGATDINLLAKKMP-PLQ---DAGPQKCLSFSVDGSRFAAGG------VDGHLRIMHWPSLRIILDEPKAHK-- 155 (261)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~~-~~~---~~~~v~~~~~s~~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~~~~~-- 155 (261)
+|.|+.+.....++...... .+. .-........-|+|+.++++- .-|-+.++|-++.+..........
T Consensus 101 yviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~ 180 (461)
T PF05694_consen 101 YVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQ 180 (461)
T ss_dssp EEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT-
T ss_pred EEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCC
Confidence 99999865432222211100 010 111223334457888877753 224588888777666554443222
Q ss_pred -ceeEEEEcCCCCEEEEecC--------------------CCcEEEEEccCCcEEEEEeecCCC-ceEEEEEecC--CCc
Q 024868 156 -SVLDMDFSLDSEFLATTST--------------------DGSARIWKTEDGVAWTFLTRNSDE-KIELCRFSKD--GTK 211 (261)
Q Consensus 156 -~v~~~~~s~~~~~l~~~~~--------------------d~~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~p~--~~~ 211 (261)
.-+...|.|.-+.++++.- ..++.+||+.+.+.++++.....+ .+..+.|..+ ..+
T Consensus 181 ~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~ 260 (461)
T PF05694_consen 181 PFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANY 260 (461)
T ss_dssp -----EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--E
T ss_pred CCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccc
Confidence 3567888888777777543 246999999999999998765433 3456666554 444
Q ss_pred ceEEEEEeeCCCcEEEEEEC-CCCe--E--Eeeeecc-----------------CcCeeEEEEeeCCCEEeC
Q 024868 212 PFLFCTVQRGDKALLAVYDI-STWN--K--IGHKRLL-----------------RKPASVLSISLDGKYLAM 261 (261)
Q Consensus 212 ~~~~~~~~~~~d~~i~~~d~-~~~~--~--~~~~~~~-----------------~~~v~~~~~s~dg~~la~ 261 (261)
-|+-++ -..+|..|-- +.++ . +..+... ..-++++..|.|.++|.+
T Consensus 261 gFvg~a----Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYv 328 (461)
T PF05694_consen 261 GFVGCA----LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYV 328 (461)
T ss_dssp EEEEEE------EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEE
T ss_pred eEEEEe----ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEE
Confidence 232221 2334444433 3332 1 1111111 234789999999999863
No 399
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.0016 Score=56.76 Aligned_cols=87 Identities=8% Similarity=0.077 Sum_probs=62.9
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEe
Q 024868 159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG 238 (261)
Q Consensus 159 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~ 238 (261)
.++-.-.+..++.++..|.+-..|+...-.......+..++|++++|+.+|+. +..|-.+|.|.+||+..++.++
T Consensus 92 v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~-----l~~G~~~G~V~v~D~~~~k~l~ 166 (1206)
T KOG2079|consen 92 VISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSL-----LLAGLGDGHVTVWDMHRAKILK 166 (1206)
T ss_pred eeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCce-----eccccCCCcEEEEEccCCccee
Confidence 33333346678889888999999886531111122234558999999999998 6888899999999999988887
Q ss_pred eeeccCcCeeEE
Q 024868 239 HKRLLRKPASVL 250 (261)
Q Consensus 239 ~~~~~~~~v~~~ 250 (261)
.+..++.+...+
T Consensus 167 ~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 167 VITEHGAPVTGV 178 (1206)
T ss_pred eeeecCCccceE
Confidence 777776655443
No 400
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.08 E-value=0.022 Score=45.78 Aligned_cols=87 Identities=13% Similarity=0.195 Sum_probs=60.3
Q ss_pred ceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCC-------------cceEEEEEeeCC
Q 024868 156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT-------------KPFLFCTVQRGD 222 (261)
Q Consensus 156 ~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~-------------~~~~~~~~~~~~ 222 (261)
.+.++..+|++++.|+...=|.|.++|+.++..++.+++..+..+.=+.....+. ...++.++-.-.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 5788999999998888766699999999999988888876554222121111111 112222455667
Q ss_pred CcEEEEEECCCCeEEeeeec
Q 024868 223 KALLAVYDISTWNKIGHKRL 242 (261)
Q Consensus 223 d~~i~~~d~~~~~~~~~~~~ 242 (261)
-|.|.||++++|..+..+..
T Consensus 389 Rg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 389 RGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred CCeEEEEecCCCCEEEEEEe
Confidence 88999999999988765554
No 401
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.06 E-value=0.004 Score=44.83 Aligned_cols=105 Identities=16% Similarity=0.176 Sum_probs=65.5
Q ss_pred CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEE-EEeeCCcEEEEeccCCeEEEEEccCceEEeecccc
Q 024868 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCL-SFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153 (261)
Q Consensus 75 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 153 (261)
+..+++|+.+|.|++|............ . .....+.++ .--.++.+..++..+|.|+.|++...+.+.....|
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~-----~-s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h 143 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRV-----C-SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQH 143 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhh-----h-cccccceeccccccccceeEEeccCCceeeeccccCceeeeeccc
Confidence 4568889999999999886332211100 0 011222222 22224567888889999999999888776555444
Q ss_pred C-CceeEEEEcCCCCEEEEe--cCCCcEEEEEccC
Q 024868 154 H-KSVLDMDFSLDSEFLATT--STDGSARIWKTED 185 (261)
Q Consensus 154 ~-~~v~~~~~s~~~~~l~~~--~~d~~i~iwd~~~ 185 (261)
. .++.....+..+++++.+ |.|..++.|++..
T Consensus 144 ~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 144 NFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 4 345555555566667666 6777777777753
No 402
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.05 E-value=0.089 Score=40.19 Aligned_cols=119 Identities=12% Similarity=0.156 Sum_probs=67.7
Q ss_pred CceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceee--ee-----CCCCCCCCCeEEEE--EeeCC-cEEEEeccCC
Q 024868 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLA--KK-----MPPLQDAGPQKCLS--FSVDG-SRFAAGGVDG 134 (261)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~--~~-----~~~~~~~~~v~~~~--~s~~~-~~l~~~~~d~ 134 (261)
.|..+...|+-+.|++-+ |+.++++++..-........ .. ...+.....+..++ -.+.+ ..++++ ...
T Consensus 37 ~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk 114 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKK 114 (275)
T ss_pred eEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-ECC
Confidence 399999999888777654 58999999976554221100 00 00122223344444 11233 344444 566
Q ss_pred eEEEEEccCce----EEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcE
Q 024868 135 HLRIMHWPSLR----IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA 188 (261)
Q Consensus 135 ~i~~~d~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~ 188 (261)
.|.+|...... ...+...-...+..++|. ++.++.+.. +...+.|+.++..
T Consensus 115 ~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~-~~f~~idl~~~~~ 169 (275)
T PF00780_consen 115 KILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTS-KGFYLIDLNTGSP 169 (275)
T ss_pred EEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeC-CceEEEecCCCCc
Confidence 88888876531 122223344678899998 556666654 3467777775544
No 403
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.0085 Score=52.87 Aligned_cols=141 Identities=10% Similarity=-0.073 Sum_probs=88.6
Q ss_pred CCeEEEEEeeCCcEEEEec--cCCeEEEEEccCceEEe----e-c------cccCCceeEEEEcCCCC-EEEEecCCCcE
Q 024868 113 GPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSLRIIL----D-E------PKAHKSVLDMDFSLDSE-FLATTSTDGSA 178 (261)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~~~~----~-~------~~~~~~v~~~~~s~~~~-~l~~~~~d~~i 178 (261)
-++..+...+|++..++.. .+-.|..||+++-.... . + ........++.|+|.-. ..+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 4566777788876655443 44478999987533211 0 0 11112356788988533 35566678989
Q ss_pred EEEEccCCc-EEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec---c-CcCeeEEEEe
Q 024868 179 RIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL---L-RKPASVLSIS 253 (261)
Q Consensus 179 ~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~---~-~~~v~~~~~s 253 (261)
++..+.... ....+. .....++++|+|.|++ ++.+...|++.-|...- +....+.. . ...|.++.|-
T Consensus 181 ~V~~~~~~~~~v~s~p--~t~~~Tav~WSprGKQ-----l~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl 252 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFP--VTNSQTAVLWSPRGKQ-----LFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWL 252 (1405)
T ss_pred hhhhhhhhhhhhcccC--cccceeeEEeccccce-----eeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEe
Confidence 888776332 222222 2234899999999999 68889999999888643 32222221 1 2678899998
Q ss_pred eCCCEEeC
Q 024868 254 LDGKYLAM 261 (261)
Q Consensus 254 ~dg~~la~ 261 (261)
..-.+|++
T Consensus 253 ~t~eflvv 260 (1405)
T KOG3630|consen 253 STQEFLVV 260 (1405)
T ss_pred cceeEEEE
Confidence 77777653
No 404
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.01 E-value=0.0046 Score=44.53 Aligned_cols=107 Identities=13% Similarity=0.121 Sum_probs=69.5
Q ss_pred CCcEEEEeccCCeEEEEEccCceEEeecc-ccCCceeEEE-EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCce
Q 024868 123 DGSRFAAGGVDGHLRIMHWPSLRIILDEP-KAHKSVLDMD-FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKI 200 (261)
Q Consensus 123 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~-~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v 200 (261)
-+..+++|+.+|.|++|............ .....|.++- --.++.+..+++.|+.|+.|+..-.+.+-....|...+.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 35678899999999999876322211111 2222333332 233566888999999999999988777665554543456
Q ss_pred EEEEEecCCCcceEEEEEee--CCCcEEEEEECCCC
Q 024868 201 ELCRFSKDGTKPFLFCTVQR--GDKALLAVYDISTW 234 (261)
Q Consensus 201 ~~~~~~p~~~~~~~~~~~~~--~~d~~i~~~d~~~~ 234 (261)
.....+..++. +..+ +.|..++.|++..-
T Consensus 149 e~~ivv~sd~~-----i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 149 EELIVVGSDEF-----LKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ceeEEecCCce-----EEeeccccchhhhhcchhhh
Confidence 66666666665 3444 77788888888643
No 405
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.97 E-value=0.0019 Score=55.42 Aligned_cols=177 Identities=11% Similarity=0.062 Sum_probs=96.4
Q ss_pred eecCCCCCceEEEECC-CCCeEEEEecCCcEEEEEEeC--CccccceeeeeCCCCCC-CCCeEEEEEeeCCcEEEEeccC
Q 024868 58 VFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYG--GATDINLLAKKMPPLQD-AGPQKCLSFSVDGSRFAAGGVD 133 (261)
Q Consensus 58 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~--~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d 133 (261)
.+++..+.+..+.|.. +-..+. ..-|.+.+|+++- ++....+.......... ...|..+-|-++..++..+..+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 3556677788888743 333333 2336789998864 22212222111111111 1233334444466778888888
Q ss_pred CeEEEEEccCceEEeeccccCCceeE-----------EEEcCCCCEEEEecCCCcEEEEEcc-----CCcEEEEEeecCC
Q 024868 134 GHLRIMHWPSLRIILDEPKAHKSVLD-----------MDFSLDSEFLATTSTDGSARIWKTE-----DGVAWTFLTRNSD 197 (261)
Q Consensus 134 ~~i~~~d~~~~~~~~~~~~~~~~v~~-----------~~~s~~~~~l~~~~~d~~i~iwd~~-----~~~~~~~~~~~~~ 197 (261)
+++++..+.+... ..+..|...+.. -..||||..++..+.||.++.|.+. .-+++..++.|..
T Consensus 205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~ 283 (1283)
T KOG1916|consen 205 GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK 283 (1283)
T ss_pred CceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC
Confidence 8988887654332 111222222221 2269999999999999988777654 3345666666664
Q ss_pred CceEEEEEecCCCc-----ceEEEEEeeCCCcEEEEEECCCCeEE
Q 024868 198 EKIELCRFSKDGTK-----PFLFCTVQRGDKALLAVYDISTWNKI 237 (261)
Q Consensus 198 ~~v~~~~~~p~~~~-----~~~~~~~~~~~d~~i~~~d~~~~~~~ 237 (261)
.+-.|.-|+..... .+.+.+-+...+..+++|....++++
T Consensus 284 ~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 284 HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 43333323322111 12222344455667899998777765
No 406
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.95 E-value=0.24 Score=43.54 Aligned_cols=163 Identities=12% Similarity=0.079 Sum_probs=90.1
Q ss_pred CCeEEEEecCCcEEEEEEeCCccccceeeee-C---CCCCC-CCCeEEEEEee--CCcEEEEecc----------CCeEE
Q 024868 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKK-M---PPLQD-AGPQKCLSFSV--DGSRFAAGGV----------DGHLR 137 (261)
Q Consensus 75 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-~---~~~~~-~~~v~~~~~s~--~~~~l~~~~~----------d~~i~ 137 (261)
+.+++.++.|+.+.-.|.++++.....-..- . ..+.. ...-..+.-+| .+..+++++. +|.|+
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 4578888889999999998887643221000 0 00000 00001111122 1334555532 68899
Q ss_pred EEEccCceEEeeccccC---------C--------ce-eEEEEcCCCCEEEEec------------------CCCcEEEE
Q 024868 138 IMHWPSLRIILDEPKAH---------K--------SV-LDMDFSLDSEFLATTS------------------TDGSARIW 181 (261)
Q Consensus 138 ~~d~~~~~~~~~~~~~~---------~--------~v-~~~~~s~~~~~l~~~~------------------~d~~i~iw 181 (261)
-+|.++++.+....... + .+ ..+++.|....++... ..++|.-.
T Consensus 340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL 419 (764)
T TIGR03074 340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL 419 (764)
T ss_pred EEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence 99999999887654210 0 01 2344455444444322 12457778
Q ss_pred EccCCcEEEEEee-cCCC-------ceEEEEEec-CCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868 182 KTEDGVAWTFLTR-NSDE-------KIELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (261)
Q Consensus 182 d~~~~~~~~~~~~-~~~~-------~v~~~~~~p-~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~ 239 (261)
|.++|+....++. |++. ...-+.+.. +|+. .-.++.+..+|.++++|.++|+.+..
T Consensus 420 D~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~--~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 420 DATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTT--VPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred eCCCCceEEEecccCCccccccccCCceEEeeecCCCcE--eeEEEEECCCCEEEEEECCCCCEEee
Confidence 8889998887765 3221 011122222 5532 11268889999999999999998754
No 407
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=96.93 E-value=0.26 Score=43.66 Aligned_cols=118 Identities=16% Similarity=0.201 Sum_probs=73.9
Q ss_pred CceEEEECC-CCCeEEEEecCCcEEEEEEeCCccc----cceeeeeCCCC----CCCCCeEEEEEeeCCcEEEEeccCCe
Q 024868 65 DPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATD----INLLAKKMPPL----QDAGPQKCLSFSVDGSRFAAGGVDGH 135 (261)
Q Consensus 65 ~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~----~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~d~~ 135 (261)
+...++|+| +.+.||+....|...||++...... ..........+ .....-..+.|.++-+.|+++ ....
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~-~r~~ 225 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVC-NRSK 225 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEE-cCCc
Confidence 577999999 5568999999999999999322111 11110001111 112344578898888888888 4566
Q ss_pred EEEEEccCceEEeec--cccCCceeEEEEcCC--CCEEEEecCCCcEEEEEccC
Q 024868 136 LRIMHWPSLRIILDE--PKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTED 185 (261)
Q Consensus 136 i~~~d~~~~~~~~~~--~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~iwd~~~ 185 (261)
+.++|+++......+ ......|..+.-+|+ +..++.. ...|...++..
T Consensus 226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence 899999877653212 222347889988886 3333333 36677777765
No 408
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.91 E-value=0.22 Score=42.41 Aligned_cols=193 Identities=18% Similarity=0.191 Sum_probs=97.1
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-C-----cEEEEEE
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-G-----GCKLFEV 92 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g-----~i~i~~~ 92 (261)
..++++||..+. ....-.+..||+.+..+.. ...++. ...-.+++.. ++...++|+.+ | ++..||.
T Consensus 285 ~~l~~vGG~~~~--~~~~~~ve~yd~~~~~w~~----~a~m~~-~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~ 356 (571)
T KOG4441|consen 285 GKLVAVGGYNRQ--GQSLRSVECYDPKTNEWSS----LAPMPS-PRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDP 356 (571)
T ss_pred CeEEEECCCCCC--CcccceeEEecCCcCcEee----cCCCCc-ccccccEEEE-CCEEEEEccccCCCcccceEEEecC
Confidence 567778877651 1122256678888875521 111221 1222334433 45677888888 3 4566666
Q ss_pred eCCccccceeeeeCCCCCCCCCeEEEEE-eeCCcEEEEeccCCe-----EEEEEccCceEEeeccc-cCCceeEEEE-cC
Q 024868 93 YGGATDINLLAKKMPPLQDAGPQKCLSF-SVDGSRFAAGGVDGH-----LRIMHWPSLRIILDEPK-AHKSVLDMDF-SL 164 (261)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~d~~-----i~~~d~~~~~~~~~~~~-~~~~v~~~~~-s~ 164 (261)
...+- .. ...+... + ..... .-+|...++|+.||. +..||..+.+- .... .......... .-
T Consensus 357 ~~~~W--~~----~a~M~~~-R-~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W--~~va~m~~~r~~~gv~~~ 426 (571)
T KOG4441|consen 357 RTNQW--TP----VAPMNTK-R-SDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKW--TPVAPMLTRRSGHGVAVL 426 (571)
T ss_pred CCCce--ec----cCCccCc-c-ccceeEEECCEEEEEeccccccccccEEEecCCCCcc--cccCCCCcceeeeEEEEE
Confidence 65541 11 1111111 1 11122 237888899998864 77777665542 1111 1112222222 22
Q ss_pred CCCEEEEecCCC------cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCc-----EEEEEECCC
Q 024868 165 DSEFLATTSTDG------SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA-----LLAVYDIST 233 (261)
Q Consensus 165 ~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~-----~i~~~d~~~ 233 (261)
+|++.++|+.++ ++..||..+++....-.......-..++. -++.. .+.||.|+ ++..||.++
T Consensus 427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~i-----YvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKI-----YVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEE-----EEECCccCCCccceEEEEcCCC
Confidence 677778887654 57788888766433222211111122322 23443 25555554 477888876
Q ss_pred Ce
Q 024868 234 WN 235 (261)
Q Consensus 234 ~~ 235 (261)
.+
T Consensus 501 ~~ 502 (571)
T KOG4441|consen 501 NQ 502 (571)
T ss_pred Cc
Confidence 54
No 409
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.88 E-value=0.13 Score=43.78 Aligned_cols=113 Identities=13% Similarity=0.175 Sum_probs=73.4
Q ss_pred CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccCCeEEEEEc
Q 024868 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHW 141 (261)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~~~d~ 141 (261)
..+.-+.-+.-++..++-+...++.|||...+.. .....+...+.|.++.|.. +++.+++.+-.+.|.+|--
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~l------E~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVL------EYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEE------EEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 3455565666555444544456899999987763 1223345578899999964 8888888888999988853
Q ss_pred cC-----c----eEEe--eccccC-CceeEEEEcCCCCEEEEecCCCcEEEEEcc
Q 024868 142 PS-----L----RIIL--DEPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKTE 184 (261)
Q Consensus 142 ~~-----~----~~~~--~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~ 184 (261)
.. . ..+. .+..+. .+|.+..|.++|.+++.+ ++++.|+|-.
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 21 1 1111 112223 368899999999877655 3678888743
No 410
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.85 E-value=0.23 Score=41.86 Aligned_cols=156 Identities=10% Similarity=0.070 Sum_probs=90.5
Q ss_pred CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEE-EEEeeCCcEEEEec------cCCeEEEEEccCceEE
Q 024868 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC-LSFSVDGSRFAAGG------VDGHLRIMHWPSLRII 147 (261)
Q Consensus 75 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~------~d~~i~~~d~~~~~~~ 147 (261)
+..++.++.++.+.-+|..+++...+.... .......+.+ ... -++. ++++. .+|.|.-+|.++++.+
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~---~~~~~~~~tssP~v-~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNG---DYKAGYTITAAPLV-VKGK-VITGISGGEFGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccc---cccccccccCCcEE-ECCE-EEEeecccccCCCcEEEEEECCCCcee
Confidence 346777788999999999888764432111 0000001111 111 1444 44432 2688999999999887
Q ss_pred eeccccCC-------------------------------ce-eEEEEcCCCCEEEEecCC-----C-----------cEE
Q 024868 148 LDEPKAHK-------------------------------SV-LDMDFSLDSEFLATTSTD-----G-----------SAR 179 (261)
Q Consensus 148 ~~~~~~~~-------------------------------~v-~~~~~s~~~~~l~~~~~d-----~-----------~i~ 179 (261)
........ .+ ..+++.|.-.+++.+..+ + +|.
T Consensus 195 W~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~v 274 (527)
T TIGR03075 195 WRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIV 274 (527)
T ss_pred EeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEE
Confidence 65432211 11 134566655666655422 1 577
Q ss_pred EEEccCCcEEEEEeecCCC--------ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEE
Q 024868 180 IWKTEDGVAWTFLTRNSDE--------KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI 237 (261)
Q Consensus 180 iwd~~~~~~~~~~~~~~~~--------~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~ 237 (261)
-.|+++|+....++..+.. ...-+....+|+. .-+++.+..+|.+++.|.++|+.+
T Consensus 275 Ald~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~--~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 275 ARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKP--RKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcE--EEEEEEeCCCceEEEEECCCCcee
Confidence 7899999988877653221 1111222246662 112678999999999999999876
No 411
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.79 E-value=0.061 Score=46.71 Aligned_cols=79 Identities=14% Similarity=0.151 Sum_probs=53.2
Q ss_pred CceEEEECCCCCeEEEEecCCcEEEEEEeCCcc--------ccce------eeeeCCCCCCCCCeEEEEEeeC---CcEE
Q 024868 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT--------DINL------LAKKMPPLQDAGPQKCLSFSVD---GSRF 127 (261)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~--------~~~~------~~~~~~~~~~~~~v~~~~~s~~---~~~l 127 (261)
.|..+.++|+|+.++..+..| |.|..+...-. .... +............|..+.|+|. +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 588999999999999888776 77766643100 0000 0111111122457899999995 4788
Q ss_pred EEeccCCeEEEEEccCc
Q 024868 128 AAGGVDGHLRIMHWPSL 144 (261)
Q Consensus 128 ~~~~~d~~i~~~d~~~~ 144 (261)
++-..|+++++||+...
T Consensus 165 ~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEecCCEEEEEecCCC
Confidence 88889999999999653
No 412
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.79 E-value=0.14 Score=38.60 Aligned_cols=138 Identities=20% Similarity=0.189 Sum_probs=80.9
Q ss_pred CceEEEECCCCCeEEEEe-cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEE-cc
Q 024868 65 DPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH-WP 142 (261)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d-~~ 142 (261)
.+.+.+++++++.++... .++.-.+|-...+..... ......+....|++++...++...+...+++. ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~--------~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~ 96 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRP--------VLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSA 96 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCccee--------eccCCccccccccCCCCEEEEEcCCCceEEEEecC
Confidence 688999999999887665 222233443333332111 11223677789999987777766566566653 22
Q ss_pred CceEE--e-eccccCCceeEEEEcCCCCEEEEec---CCCcEEEEEcc---CC------cEEEEEeecCCCceEEEEEec
Q 024868 143 SLRII--L-DEPKAHKSVLDMDFSLDSEFLATTS---TDGSARIWKTE---DG------VAWTFLTRNSDEKIELCRFSK 207 (261)
Q Consensus 143 ~~~~~--~-~~~~~~~~v~~~~~s~~~~~l~~~~---~d~~i~iwd~~---~~------~~~~~~~~~~~~~v~~~~~~p 207 (261)
++... . ........|..+.+||||..++... .++.|.+=-+. .+ .+..... .....+..+.|.+
T Consensus 97 ~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~-~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 97 SGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP-PLLSDVTDVAWSD 175 (253)
T ss_pred CCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc-cccCcceeeeecC
Confidence 33221 1 1111112799999999999887655 34667766543 23 1111111 1123588999999
Q ss_pred CCCc
Q 024868 208 DGTK 211 (261)
Q Consensus 208 ~~~~ 211 (261)
++..
T Consensus 176 ~~~L 179 (253)
T PF10647_consen 176 DSTL 179 (253)
T ss_pred CCEE
Confidence 9986
No 413
>PRK13684 Ycf48-like protein; Provisional
Probab=96.70 E-value=0.22 Score=39.39 Aligned_cols=152 Identities=16% Similarity=0.172 Sum_probs=84.9
Q ss_pred CCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEcc
Q 024868 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (261)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 142 (261)
.+.+..+.+.|++.+++++ ..|.+..- .+.+...... ........++.+.+.++++.++++ ..|.+.+=..+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s-~~~gg~tW~~-----~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYST-WEPGQTAWTP-----HQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEE-cCCCCCeEEE-----eeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCC
Confidence 4568889999988766554 56644432 1222111111 111224578899999999887776 56766532233
Q ss_pred CceEEeecccc----CCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee--cCCCceEEEEEecCCCcceEEE
Q 024868 143 SLRIILDEPKA----HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR--NSDEKIELCRFSKDGTKPFLFC 216 (261)
Q Consensus 143 ~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~~~~~ 216 (261)
.+..-...... ...+..+.+.|+++.++++ .+|.+. .....|+.-..... ......+.+.|..+++.
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~----- 316 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKG----- 316 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCce-----
Confidence 33321111111 1357889999988766655 556544 34444443333321 11224777888777764
Q ss_pred EEeeCCCcEEEEEE
Q 024868 217 TVQRGDKALLAVYD 230 (261)
Q Consensus 217 ~~~~~~d~~i~~~d 230 (261)
...+..|.|-.|+
T Consensus 317 -~~~G~~G~il~~~ 329 (334)
T PRK13684 317 -FVLGQRGVLLRYV 329 (334)
T ss_pred -EEECCCceEEEec
Confidence 5567778877665
No 414
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.67 E-value=0.089 Score=42.92 Aligned_cols=134 Identities=10% Similarity=0.112 Sum_probs=76.2
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCC--------eEEEEecCCcEEEEEEeCCccccceeeeeCCCC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD--------DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL 109 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 109 (261)
+++..|.+.+++ ...+.-|.+. -+.|.|+.+ .|+ |-.+..|.-.|.+-.. .++...+....
T Consensus 491 kLykmDIErGkv------veeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~g--NKi~v~esKdY 559 (776)
T COG5167 491 KLYKMDIERGKV------VEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARG--NKIKVVESKDY 559 (776)
T ss_pred cceeeeccccee------eeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccC--Cceeeeeehhc
Confidence 778888877775 4455555443 567777532 233 3334334433433222 12111122222
Q ss_pred CCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEcc
Q 024868 110 QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184 (261)
Q Consensus 110 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~ 184 (261)
.......+..-. ..-++++++..|.|++||--.......++.....|..+..+.+|+++++.+. ..+.+-|++
T Consensus 560 ~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 560 KTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred cccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 222222332222 3458999999999999994332232334455568999999999998887764 567777764
No 415
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.097 Score=42.07 Aligned_cols=131 Identities=12% Similarity=0.214 Sum_probs=80.2
Q ss_pred CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee----
Q 024868 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD---- 149 (261)
Q Consensus 74 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~---- 149 (261)
|.+..+.+...|.+.-|........... .......++|.++.||+|.+.+|+--.+.+|.+++....+....
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpi----Sfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ 107 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPI----SFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQE 107 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCc----eeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHH
Confidence 4444444455666888877665431111 11223467999999999999999999999999998743332211
Q ss_pred ccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCc-EEEEEeecCCCceEEEEEecCCCc
Q 024868 150 EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTK 211 (261)
Q Consensus 150 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~ 211 (261)
.......|....|+.+ .-+|..+..| +-+|-+...+ .++..+.+. ..|.-..|.++-+.
T Consensus 108 ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~-~nvnWy~yc~et~v 167 (657)
T KOG2377|consen 108 CKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHN-LNVNWYMYCPETAV 167 (657)
T ss_pred hccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcc-cCccEEEEccccce
Confidence 1122235899999865 5566555444 6666654332 233333333 34777888888775
No 416
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.56 E-value=0.24 Score=38.29 Aligned_cols=140 Identities=11% Similarity=0.076 Sum_probs=68.4
Q ss_pred CCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEcc-CCcEEE
Q 024868 112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-DGVAWT 190 (261)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~-~~~~~~ 190 (261)
.+.+..+.-++||++++++.......-||--...-..........|..|.|+|++.+.+.+ ..|.++.=+.. ..+.-.
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~ 222 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS 222 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence 3678888889999999998655555667643221111222234579999999998876655 77888877622 122111
Q ss_pred E--Eee-cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee---eccCcCeeEEEEeeCCCEE
Q 024868 191 F--LTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---RLLRKPASVLSISLDGKYL 259 (261)
Q Consensus 191 ~--~~~-~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~v~~~~~s~dg~~l 259 (261)
. ... .....+..++|.++++. .+.+ ..|.+ +.....|+.-+.. ......+..+.|.++.+-+
T Consensus 223 ~~~~~~~~~~~~~ld~a~~~~~~~-----wa~g-g~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf 290 (302)
T PF14870_consen 223 EPIIPIKTNGYGILDLAYRPPNEI-----WAVG-GSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF 290 (302)
T ss_dssp --B-TTSS--S-EEEEEESSSS-E-----EEEE-STT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEE
T ss_pred cccCCcccCceeeEEEEecCCCCE-----EEEe-CCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceE
Confidence 1 111 11223788999998775 2444 44433 3444445433222 2234567788887665543
No 417
>PHA02713 hypothetical protein; Provisional
Probab=96.56 E-value=0.4 Score=40.81 Aligned_cols=123 Identities=14% Similarity=0.139 Sum_probs=58.5
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC------CcEEEEEEeCCccccceeeeeCCCCCC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN------GGCKLFEVYGGATDINLLAKKMPPLQD 111 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~~~~~~~~~~~~~~~~~~~~~~ 111 (261)
.++.||+.+..+...+ .++..... .+++. -++..++.|+.+ ..+..||..+..- . ....+..
T Consensus 273 ~v~~yd~~~~~W~~l~----~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W--~----~~~~m~~ 340 (557)
T PHA02713 273 CILVYNINTMEYSVIS----TIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIH--V----ELPPMIK 340 (557)
T ss_pred CEEEEeCCCCeEEECC----CCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeE--e----eCCCCcc
Confidence 4678999887752211 11111111 12222 256666777643 2466677665531 1 1222221
Q ss_pred CCCeEEEEEeeCCcEEEEeccCC-----eEEEEEccCceEEe--eccccCCceeEEEEcCCCCEEEEecCC
Q 024868 112 AGPQKCLSFSVDGSRFAAGGVDG-----HLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTSTD 175 (261)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~~~d~-----~i~~~d~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d 175 (261)
. ........-+|+..+.|+.++ .+..||..+.+-.. .+.........+ .-+|++.+.|+.+
T Consensus 341 ~-R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~ 408 (557)
T PHA02713 341 N-RCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRT 408 (557)
T ss_pred h-hhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCC
Confidence 1 111122234688888888654 47889987654221 111111111122 2267777777754
No 418
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.55 E-value=0.00018 Score=57.18 Aligned_cols=140 Identities=12% Similarity=0.121 Sum_probs=96.1
Q ss_pred CCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEE-eccCCeEEEEE
Q 024868 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMH 140 (261)
Q Consensus 62 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~~~d 140 (261)
+-.......|.|.+..++.++.+..+..||-..... ......+....++|..++..++. +-..+.+++||
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~---------le~n~tg~aldm~wDkegdvlavlAek~~piylwd 103 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVI---------LELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWD 103 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhhhhccee---------cccCCchhHhhhhhccccchhhhhhhcCCCeeech
Confidence 334455677888887788888888888898765442 22223455667889888766544 44778899999
Q ss_pred ccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868 141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (261)
Q Consensus 141 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 211 (261)
+.+......-.+....-.-+.|++....++.+...+.+.|++..+.+.+...-.|.. .+.+++|.+.+..
T Consensus 104 ~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~R-Rgtq~av~lEd~v 173 (615)
T KOG2247|consen 104 VNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQR-RGTQIAVTLEDYV 173 (615)
T ss_pred hhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhccccc-ceeEEEeccccee
Confidence 976554222222222222377999888899998889999999887766555443444 5888889888764
No 419
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.55 E-value=0.018 Score=29.74 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=26.1
Q ss_pred CceeEEEEcCCC---CEEEEecCCCcEEEEEccC
Q 024868 155 KSVLDMDFSLDS---EFLATTSTDGSARIWKTED 185 (261)
Q Consensus 155 ~~v~~~~~s~~~---~~l~~~~~d~~i~iwd~~~ 185 (261)
+.++++.|||++ .+|+.+-..+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368999999854 4888888889999999985
No 420
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.47 E-value=0.24 Score=37.18 Aligned_cols=178 Identities=10% Similarity=0.046 Sum_probs=105.5
Q ss_pred ceEEEECCCCCeEEEEecCC--cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC
Q 024868 66 PMTIAVNPSGDDFVCSTTNG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (261)
Q Consensus 66 v~~~~~~~~~~~l~~~~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 143 (261)
...+.|..+|.++-+.+..| .|+.+|+.+++..... .++..---..++.. +++.....-.++...+||..+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~------~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~t 119 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSV------PLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNT 119 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEE------E-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTT
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEE------ECCccccceeEEEE-CCEEEEEEecCCeEEEEcccc
Confidence 45788877887777777766 6888888887642211 11111122334443 233334444889999999988
Q ss_pred ceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC-C---ceEEEEEecCCCcceEEEEEe
Q 024868 144 LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-E---KIELCRFSKDGTKPFLFCTVQ 219 (261)
Q Consensus 144 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~---~v~~~~~~p~~~~~~~~~~~~ 219 (261)
.+.+..+. ..+.=+.++ .|++.|+.+.....++++|..+.+....+..... . .++.+.|- +|.. .+-
T Consensus 120 l~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~I-----yAN 190 (264)
T PF05096_consen 120 LKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKI-----YAN 190 (264)
T ss_dssp TEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEE-----EEE
T ss_pred ceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEE-----EEE
Confidence 87765443 233445565 5677777776678899999988887776654321 1 35667775 5553 233
Q ss_pred eCCCcEEEEEECCCCeEEeeeecc---------------CcCeeEEEEeeCCCEE
Q 024868 220 RGDKALLAVYDISTWNKIGHKRLL---------------RKPASVLSISLDGKYL 259 (261)
Q Consensus 220 ~~~d~~i~~~d~~~~~~~~~~~~~---------------~~~v~~~~~s~dg~~l 259 (261)
.=....|...|..+|+.+..+... ..-.+.+++.|....|
T Consensus 191 VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l 245 (264)
T PF05096_consen 191 VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRL 245 (264)
T ss_dssp ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEE
T ss_pred eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEE
Confidence 344557889999999876544311 1346889999876654
No 421
>PRK10115 protease 2; Provisional
Probab=96.42 E-value=0.58 Score=40.97 Aligned_cols=110 Identities=7% Similarity=0.010 Sum_probs=65.2
Q ss_pred CceEEEECCCCCeEEEEecC-----CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC------
Q 024868 65 DPMTIAVNPSGDDFVCSTTN-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------ 133 (261)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------ 133 (261)
.+..+.++|||++|+.+... -.|++.|+.++.... ..+... . ..++|++|++.|+....+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~-------~~i~~~-~-~~~~w~~D~~~~~y~~~~~~~~~~ 198 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP-------ELLDNV-E-PSFVWANDSWTFYYVRKHPVTLLP 198 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCC-------ccccCc-c-eEEEEeeCCCEEEEEEecCCCCCC
Confidence 46678899999998876432 357788887664211 111111 1 459999999877766432
Q ss_pred CeEEEEEccCc--eEEeeccccCCcee-EEEEcCCCCEEEEecC---CCcEEEEEc
Q 024868 134 GHLRIMHWPSL--RIILDEPKAHKSVL-DMDFSLDSEFLATTST---DGSARIWKT 183 (261)
Q Consensus 134 ~~i~~~d~~~~--~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~---d~~i~iwd~ 183 (261)
..|+.+++.++ +....+........ ....+.++++++..+. ++.+.+++.
T Consensus 199 ~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 199 YQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 35788888877 22222222222333 3333448887654332 457888885
No 422
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.34 E-value=0.37 Score=37.95 Aligned_cols=148 Identities=16% Similarity=0.130 Sum_probs=84.7
Q ss_pred CCCeEEEEEeeCCcEEEEeccCCe------EEEEEccC--c--eEE-----eeccccCC--------ceeEEEEcCCCCE
Q 024868 112 AGPQKCLSFSVDGSRFAAGGVDGH------LRIMHWPS--L--RII-----LDEPKAHK--------SVLDMDFSLDSEF 168 (261)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~~~d~~------i~~~d~~~--~--~~~-----~~~~~~~~--------~v~~~~~s~~~~~ 168 (261)
-+.+..+.+.|++..+++.+.+|. ++.+++.. + ..+ ..+....+ ...++++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 356788899864444555556666 55555443 0 000 01111111 2457888788888
Q ss_pred EEEecCC------CcEEEEEccCCcEEEEEee--------------cCCCceEEEEEecCCCcceEEEEEeeCCC-----
Q 024868 169 LATTSTD------GSARIWKTEDGVAWTFLTR--------------NSDEKIELCRFSKDGTKPFLFCTVQRGDK----- 223 (261)
Q Consensus 169 l~~~~~d------~~i~iwd~~~~~~~~~~~~--------------~~~~~v~~~~~~p~~~~~~~~~~~~~~~d----- 223 (261)
+++.-.+ ..|+.++.. |+.+..+.. ..+....+++++|+|+.+|.+.-..-..|
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 8887777 788888876 665544421 12334789999999996443211111112
Q ss_pred ------cEEEEEECCC-CeEEe--eeec-------cCcCeeEEEEeeCCCEEe
Q 024868 224 ------ALLAVYDIST-WNKIG--HKRL-------LRKPASVLSISLDGKYLA 260 (261)
Q Consensus 224 ------~~i~~~d~~~-~~~~~--~~~~-------~~~~v~~~~~s~dg~~la 260 (261)
-.|..||..+ ++... .+.. ....++.+.+-+|+++|+
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV 230 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence 2345566554 22221 1222 346789999999999876
No 423
>PHA02790 Kelch-like protein; Provisional
Probab=96.33 E-value=0.51 Score=39.40 Aligned_cols=192 Identities=8% Similarity=0.001 Sum_probs=88.9
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC--CcEEEEEEeCCc
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN--GGCKLFEVYGGA 96 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~i~~~~~~~ 96 (261)
..++++||.++. ...-.++.||+.+..+...+ .+.........+. -++...+.|+.+ ..+..||...+.
T Consensus 272 ~~lyviGG~~~~---~~~~~v~~Ydp~~~~W~~~~----~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~ 342 (480)
T PHA02790 272 EVVYLIGGWMNN---EIHNNAIAVNYISNNWIPIP----PMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAA 342 (480)
T ss_pred CEEEEEcCCCCC---CcCCeEEEEECCCCEEEECC----CCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCe
Confidence 446677765432 11225788999887653221 1111111122222 367777777754 346667654432
Q ss_pred cccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC---eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEec
Q 024868 97 TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG---HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS 173 (261)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 173 (261)
- . ....+.... .......-+|+..+.|+.++ .+..||..+.+-..........-......-++++.+.|
T Consensus 343 W--~----~~~~l~~~r-~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G- 414 (480)
T PHA02790 343 W--V----NMPSLLKPR-CNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG- 414 (480)
T ss_pred E--E----ECCCCCCCC-cccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC-
Confidence 1 1 122222111 11122234788888887543 46778876554321111111111111223356666666
Q ss_pred CCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC-----cEEEEEECCCCe
Q 024868 174 TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLAVYDISTWN 235 (261)
Q Consensus 174 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d-----~~i~~~d~~~~~ 235 (261)
|.+.+||.++++-...-.......-.+++ .-+|+. | +.||.+ ..+..||..+++
T Consensus 415 --G~~e~ydp~~~~W~~~~~m~~~r~~~~~~-v~~~~I-Y----viGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 415 --RNAEFYCESSNTWTLIDDPIYPRDNPELI-IVDNKL-L----LIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred --CceEEecCCCCcEeEcCCCCCCccccEEE-EECCEE-E----EECCcCCCcccceEEEEECCCCe
Confidence 35778998776543322111111011222 235554 2 444432 357788877654
No 424
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.32 E-value=0.38 Score=37.88 Aligned_cols=147 Identities=18% Similarity=0.204 Sum_probs=82.5
Q ss_pred CCceEEEECCCCCeEEEEecCCc------EEEEEEeCCcc-ccceeeeeCCCCCC-C--------CCeEEEEEeeCCcEE
Q 024868 64 GDPMTIAVNPSGDDFVCSTTNGG------CKLFEVYGGAT-DINLLAKKMPPLQD-A--------GPQKCLSFSVDGSRF 127 (261)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~dg~------i~i~~~~~~~~-~~~~~~~~~~~~~~-~--------~~v~~~~~s~~~~~l 127 (261)
+.+..+.+.+++..+++.+++|. ++.+++..... ...........+.. . -...++++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 56788999976666766777777 66666654111 00000000001111 1 134578887788877
Q ss_pred EEeccC------CeEEEEEccCceEEeec---------------cccCCceeEEEEcCCCCEEEEecC-----CC--c--
Q 024868 128 AAGGVD------GHLRIMHWPSLRIILDE---------------PKAHKSVLDMDFSLDSEFLATTST-----DG--S-- 177 (261)
Q Consensus 128 ~~~~~d------~~i~~~d~~~~~~~~~~---------------~~~~~~v~~~~~s~~~~~l~~~~~-----d~--~-- 177 (261)
++.-.+ ..|+.++.. +.....+ ...+....+++++|+|+.|+++.. |+ .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 776555 678777754 4432221 112346889999999996655433 22 1
Q ss_pred -----EEE--EEccC-CcEEEEE--eec------CCCceEEEEEecCCCc
Q 024868 178 -----ARI--WKTED-GVAWTFL--TRN------SDEKIELCRFSKDGTK 211 (261)
Q Consensus 178 -----i~i--wd~~~-~~~~~~~--~~~------~~~~v~~~~~~p~~~~ 211 (261)
+++ ||..+ ++....+ ... ....+..+.+.++++.
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~l 228 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRL 228 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcE
Confidence 444 45444 3233322 211 2345889999999996
No 425
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.26 E-value=0.76 Score=40.76 Aligned_cols=142 Identities=11% Similarity=0.233 Sum_probs=80.7
Q ss_pred CCCeEEEEEeeCCcEEEEecc-----------C---CeEEEEEccCceEEeecccc-CC---ceeEEEEcCC-CCEEEEe
Q 024868 112 AGPQKCLSFSVDGSRFAAGGV-----------D---GHLRIMHWPSLRIILDEPKA-HK---SVLDMDFSLD-SEFLATT 172 (261)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~~~-----------d---~~i~~~d~~~~~~~~~~~~~-~~---~v~~~~~s~~-~~~l~~~ 172 (261)
......+++.+....+++.+. . ..++++|-++-+......-. .. .+.++.|..| +.+++.|
T Consensus 714 ~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVG 793 (1096)
T KOG1897|consen 714 GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVG 793 (1096)
T ss_pred CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEE
Confidence 445566677664444444331 1 13667776665544322211 12 3555568877 6677776
Q ss_pred cC----------CCcEEEEEccCCcEEEEEeec-CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868 173 ST----------DGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (261)
Q Consensus 173 ~~----------d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~ 241 (261)
+. .|.|.+|.+..++.++....+ -.+.+.++.- -+|++ + ++-+..|++|+..+.+.++...
T Consensus 794 T~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkl-----l--A~In~~vrLye~t~~~eLr~e~ 865 (1096)
T KOG1897|consen 794 TGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKL-----L--AGINQSVRLYEWTTERELRIEC 865 (1096)
T ss_pred EEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeE-----E--EecCcEEEEEEccccceehhhh
Confidence 53 478888888774444333222 1223444432 35664 2 3345689999998886665555
Q ss_pred ccCcCeeEEEEeeCCCEEeC
Q 024868 242 LLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 242 ~~~~~v~~~~~s~dg~~la~ 261 (261)
.+..++..+...-.|..+|+
T Consensus 866 ~~~~~~~aL~l~v~gdeI~V 885 (1096)
T KOG1897|consen 866 NISNPIIALDLQVKGDEIAV 885 (1096)
T ss_pred cccCCeEEEEEEecCcEEEE
Confidence 66667777777776666653
No 426
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.25 E-value=0.022 Score=29.43 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=25.7
Q ss_pred CCeEEEEEeeCC---cEEEEeccCCeEEEEEccC
Q 024868 113 GPQKCLSFSVDG---SRFAAGGVDGHLRIMHWPS 143 (261)
Q Consensus 113 ~~v~~~~~s~~~---~~l~~~~~d~~i~~~d~~~ 143 (261)
+.+++++|||+. .+|+.+-..+.+.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468899999854 5888887889999999985
No 427
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=96.16 E-value=0.11 Score=41.85 Aligned_cols=162 Identities=12% Similarity=0.048 Sum_probs=87.7
Q ss_pred CceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeE-EEEEeeCCcEEEEeccCCeEEEE-Ecc
Q 024868 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK-CLSFSVDGSRFAAGGVDGHLRIM-HWP 142 (261)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~d~~i~~~-d~~ 142 (261)
++..+-..|||+.+..-+. .++.++++.+.....+.+...... .....|. .+..-..|.-+++++.||-|.-| |.+
T Consensus 222 ~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg-~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr 299 (733)
T COG4590 222 DVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPG-DSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVR 299 (733)
T ss_pred chHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCC-chHHHHHHHHHHHhCceeEEEEcCCCceeeeeeee
Confidence 3666778899998877654 668999987765322211000000 0001111 11122245567778889988777 444
Q ss_pred CceEE-----eeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEE
Q 024868 143 SLRII-----LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT 217 (261)
Q Consensus 143 ~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~ 217 (261)
.+... +.+.-...++..+.-..+.+-+++-+.+|.+.++.....+.+-.-.. .. .+.-+++||.+.+
T Consensus 300 ~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~-~~-~~~~~~~Sp~~~~------ 371 (733)
T COG4590 300 RDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA-YQ-APQLVAMSPNQAY------ 371 (733)
T ss_pred cCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh-hc-CcceeeeCcccch------
Confidence 33221 11111111233332222344577777788888877554443322221 22 3667899999998
Q ss_pred EeeCCCcEEEEEECCCCeE
Q 024868 218 VQRGDKALLAVYDISTWNK 236 (261)
Q Consensus 218 ~~~~~d~~i~~~d~~~~~~ 236 (261)
....+.|.++++.+++..+
T Consensus 372 Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 372 LLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred heeecCCceEEEEecCCCC
Confidence 3345567899999876543
No 428
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.14 E-value=0.22 Score=40.74 Aligned_cols=151 Identities=12% Similarity=0.100 Sum_probs=77.9
Q ss_pred ceEEEEC-CCCCeEE-EEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCc-------EEEEeccCCeE
Q 024868 66 PMTIAVN-PSGDDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-------RFAAGGVDGHL 136 (261)
Q Consensus 66 v~~~~~~-~~~~~l~-~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~~~~~d~~i 136 (261)
+..+-.+ .+...|. .++....++-.|++.++. .....-+..+ -+.|.|+.+ .-++|-.+..|
T Consensus 469 p~K~mlh~~dssli~~dg~~~~kLykmDIErGkv--------veeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~sv 539 (776)
T COG5167 469 PEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKV--------VEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSV 539 (776)
T ss_pred hhhceeecCCcceEEecCCCcccceeeeccccee--------eeEeecCCcc-eeecCCchhHHhcCccceEEeecccce
Confidence 3434443 3444443 344445677777776654 1111112233 456666432 12334455556
Q ss_pred EEEEccCceEEeeccccCCceeEEEEc----CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcc
Q 024868 137 RIMHWPSLRIILDEPKAHKSVLDMDFS----LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP 212 (261)
Q Consensus 137 ~~~d~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 212 (261)
.-.|.+-................-.|| ...-++|.++..|-|++||-- |...++.....+..|-.+..+.+|+++
T Consensus 540 FrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~i 618 (776)
T COG5167 540 FRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHI 618 (776)
T ss_pred EEecccccCCceeeeeehhccccccccccccccCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEE
Confidence 556655322111112222222222232 234589999999999999954 333333333344468889999999983
Q ss_pred eEEEEEeeCCCcEEEEEECC
Q 024868 213 FLFCTVQRGDKALLAVYDIS 232 (261)
Q Consensus 213 ~~~~~~~~~~d~~i~~~d~~ 232 (261)
++.+ ...+.+-|++
T Consensus 619 -----laTC-k~yllL~d~~ 632 (776)
T COG5167 619 -----LATC-KNYLLLTDVP 632 (776)
T ss_pred -----EEee-cceEEEEecc
Confidence 2222 2356666654
No 429
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.11 E-value=0.21 Score=39.43 Aligned_cols=108 Identities=12% Similarity=0.171 Sum_probs=55.7
Q ss_pred CceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC----CcEEEEeccC-------
Q 024868 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD----GSRFAAGGVD------- 133 (261)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~d------- 133 (261)
....++|.|||+.+++ ...|.|++++ ..+......................++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4678999999876664 6699999999 3333211111111112233567899999994 4333333321
Q ss_pred -CeEEEEEccCc-------eEEeec-cc---cCCceeEEEEcCCCCEEEEecC
Q 024868 134 -GHLRIMHWPSL-------RIILDE-PK---AHKSVLDMDFSLDSEFLATTST 174 (261)
Q Consensus 134 -~~i~~~d~~~~-------~~~~~~-~~---~~~~v~~~~~s~~~~~l~~~~~ 174 (261)
..|.-|..... +.+... .. ....-..+.|.|||.+.++.+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 13443443322 111111 11 1124567999999977666554
No 430
>PRK13684 Ycf48-like protein; Provisional
Probab=96.05 E-value=0.55 Score=37.15 Aligned_cols=139 Identities=15% Similarity=0.131 Sum_probs=76.9
Q ss_pred CCCeEEEEEeeCCcEEEEeccCCeEEEEEccCc-eEEeecc-ccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEE
Q 024868 112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-RIILDEP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW 189 (261)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~ 189 (261)
...+..+.+.|++.+++++ ..|.+..- .+.+ +.-.... .....+.++.+.|+++.++++ ..|.+.+=..+.|+.-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 4568889999998777666 56655432 1222 2211122 223468999999999877765 4565543233444332
Q ss_pred EEEeec---CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee---eccCcCeeEEEEeeCCCEEe
Q 024868 190 TFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---RLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 190 ~~~~~~---~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~v~~~~~s~dg~~la 260 (261)
.....+ ....+.++.+.|+++. ...+.+|.+.. ....++.-... .........+.|..+++.++
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~------~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEI------WAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV 318 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCE------EEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE
Confidence 222211 1224778889998774 44556675543 33434332222 12223567777777766655
No 431
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.05 E-value=0.43 Score=35.91 Aligned_cols=118 Identities=14% Similarity=0.163 Sum_probs=76.3
Q ss_pred CeEEEEEeeCCcEEEEeccCC--eEEEEEccCceEEeeccccCC-ceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEE
Q 024868 114 PQKCLSFSVDGSRFAAGGVDG--HLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT 190 (261)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~ 190 (261)
-...+.|..+|.++-+.+.-| .|+.+|+.+++......-... --..++... ++.....=.++...+||..+.+.+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEEE
Confidence 346788888898888887666 699999999886544332222 234455543 3334444468999999999999998
Q ss_pred EEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868 191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (261)
Q Consensus 191 ~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~ 241 (261)
++.-... =+.++ .||+. ++.+.....|+++|..+.+....+.
T Consensus 125 ~~~y~~E--GWGLt--~dg~~-----Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 125 TFPYPGE--GWGLT--SDGKR-----LIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp EEE-SSS----EEE--ECSSC-----EEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred EEecCCc--ceEEE--cCCCE-----EEEECCccceEEECCcccceEEEEE
Confidence 8875543 46666 56776 3444555689999998877655444
No 432
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.65 Score=37.65 Aligned_cols=106 Identities=6% Similarity=0.019 Sum_probs=69.5
Q ss_pred CCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEc
Q 024868 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (261)
Q Consensus 62 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~ 141 (261)
..++|.++.|++|.+.||+--.+.+|.+++....+...... .........|.+..|+.. .-+|.....| +.+|..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~---~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v 139 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT---QECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQV 139 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH---HHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEE
Confidence 35689999999999999999999999999985544311111 111112345888999865 5666664555 677766
Q ss_pred cCceE-EeeccccCCceeEEEEcCCCCEEEEe
Q 024868 142 PSLRI-ILDEPKAHKSVLDMDFSLDSEFLATT 172 (261)
Q Consensus 142 ~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~ 172 (261)
...+. ++....+.-.|.-..|.++.+.++.+
T Consensus 140 ~pekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 140 LPEKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred chhhhhhhhhhhcccCccEEEEccccceEeee
Confidence 54443 23334444568888888887755433
No 433
>PHA03098 kelch-like protein; Provisional
Probab=95.99 E-value=0.55 Score=39.80 Aligned_cols=151 Identities=11% Similarity=0.083 Sum_probs=72.0
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC------CcEEEEEE
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN------GGCKLFEV 92 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~~~ 92 (261)
+.+.+.||.++.. ..-.++.||+.+..+...+. ++...... +++ .-+++.++.|+.+ ..+..||.
T Consensus 343 ~~lyv~GG~~~~~---~~~~v~~yd~~~~~W~~~~~----lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~ 413 (534)
T PHA03098 343 NRIYVIGGIYNSI---SLNTVESWKPGESKWREEPP----LIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSL 413 (534)
T ss_pred CEEEEEeCCCCCE---ecceEEEEcCCCCceeeCCC----cCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeC
Confidence 4566677655311 11257788988877633211 11111111 122 2256666776632 35778887
Q ss_pred eCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC--------CeEEEEEccCceEEee--ccccCCceeEEEE
Q 024868 93 YGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--------GHLRIMHWPSLRIILD--EPKAHKSVLDMDF 162 (261)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~ 162 (261)
.+..- .. ....+.... ...+...+++.++.|+.+ ..+..||..+.+-... ..........+.
T Consensus 414 ~t~~W--~~----~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~- 485 (534)
T PHA03098 414 NTNKW--SK----GSPLPISHY-GGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI- 485 (534)
T ss_pred CCCee--ee----cCCCCcccc-CceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-
Confidence 66542 11 111111111 112233467777777643 2378888876543211 111111111222
Q ss_pred cCCCCEEEEecCC-----CcEEEEEccCCc
Q 024868 163 SLDSEFLATTSTD-----GSARIWKTEDGV 187 (261)
Q Consensus 163 s~~~~~l~~~~~d-----~~i~iwd~~~~~ 187 (261)
-+++.++.|+.+ +.+.+||..+.+
T Consensus 486 -~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 486 -FNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred -ECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 267777777654 357778877654
No 434
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.95 E-value=0.69 Score=37.46 Aligned_cols=146 Identities=18% Similarity=0.177 Sum_probs=80.9
Q ss_pred ceEEEECCCCCeEEEEecCCcEEE-EEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCc
Q 024868 66 PMTIAVNPSGDDFVCSTTNGGCKL-FEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL 144 (261)
Q Consensus 66 v~~~~~~~~~~~l~~~~~dg~i~i-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 144 (261)
...+..++++..++.+ ..|.+.. ||-.... .. .........+..+.|.+++..++++ ..|.+.. ....+
T Consensus 241 f~~v~~~~dG~~~~vg-~~G~~~~s~d~G~~~--W~-----~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G 310 (398)
T PLN00033 241 FSTVNRSPDGDYVAVS-SRGNFYLTWEPGQPY--WQ-----PHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTG 310 (398)
T ss_pred eeeEEEcCCCCEEEEE-CCccEEEecCCCCcc--eE-----EecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCC
Confidence 3445667777766665 4443332 3221110 00 1112234567889999999888777 5666543 33333
Q ss_pred e-----EEeeccc--cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEe--ecCCCceEEEEEecCCCcceEE
Q 024868 145 R-----IILDEPK--AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKIELCRFSKDGTKPFLF 215 (261)
Q Consensus 145 ~-----~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~~~~ 215 (261)
+ ....... ....+.++.|.+++..+++| .+|.+.... ..|+.-.... .......+.+.|.++++.
T Consensus 311 ~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g---- 384 (398)
T PLN00033 311 LTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKG---- 384 (398)
T ss_pred CcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCce----
Confidence 2 1111111 11258899999888876666 457555543 4454433322 112335789999887775
Q ss_pred EEEeeCCCcEEEEE
Q 024868 216 CTVQRGDKALLAVY 229 (261)
Q Consensus 216 ~~~~~~~d~~i~~~ 229 (261)
...+.+|.|.-|
T Consensus 385 --~~~G~~G~il~~ 396 (398)
T PLN00033 385 --FVLGNDGVLLRY 396 (398)
T ss_pred --EEEeCCcEEEEe
Confidence 566777876554
No 435
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=95.77 E-value=0.32 Score=32.29 Aligned_cols=121 Identities=10% Similarity=-0.005 Sum_probs=70.9
Q ss_pred EEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-----CCcEEEEeccCCeEEEEEccC
Q 024868 69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-----DGSRFAAGGVDGHLRIMHWPS 143 (261)
Q Consensus 69 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~d~~i~~~d~~~ 143 (261)
-.|......|++++..|+|.|++.................+.-...|++++-.+ +...|+.| ....+..||+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliG-t~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEccc
Confidence 345555567888888888999987654321111112233333456677776544 23466666 566799999987
Q ss_pred ceEEeeccccCCceeEEEEcC---CCCEEEEecCCCcEEEEEccCCcEEEE
Q 024868 144 LRIILDEPKAHKSVLDMDFSL---DSEFLATTSTDGSARIWKTEDGVAWTF 191 (261)
Q Consensus 144 ~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~d~~i~iwd~~~~~~~~~ 191 (261)
...+.. ..-...+.++.+-. ...-++..+.+..|+-||....+...+
T Consensus 83 N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 83 NSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred Cchhhh-hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 766433 33345666666632 223355555567888888665444433
No 436
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.68 E-value=1.4 Score=38.98 Aligned_cols=118 Identities=12% Similarity=0.066 Sum_probs=68.1
Q ss_pred CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCC-CCCCCeEEEEEe----------------eCCcEEEEeccCCeEE
Q 024868 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL-QDAGPQKCLSFS----------------VDGSRFAAGGVDGHLR 137 (261)
Q Consensus 75 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s----------------~~~~~l~~~~~d~~i~ 137 (261)
+..|+.++.++.|+-.|..+++...+......... .....++.+.+- ..+..|+.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 45666777778888888887775443321111000 000112223321 1234777888999999
Q ss_pred EEEccCceEEeeccccCCce-------------eEEEEcC--CCCEEEEecC----------CCcEEEEEccCCcEEEEE
Q 024868 138 IMHWPSLRIILDEPKAHKSV-------------LDMDFSL--DSEFLATTST----------DGSARIWKTEDGVAWTFL 192 (261)
Q Consensus 138 ~~d~~~~~~~~~~~~~~~~v-------------~~~~~s~--~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~ 192 (261)
-.|.++++....+.. ++.+ ..+.-+| .+..++.++. +|.|+-+|.++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998765422 1111 1122223 2334555532 578999999999998877
Q ss_pred e
Q 024868 193 T 193 (261)
Q Consensus 193 ~ 193 (261)
.
T Consensus 353 ~ 353 (764)
T TIGR03074 353 D 353 (764)
T ss_pred e
Confidence 5
No 437
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.65 E-value=0.28 Score=36.12 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=51.5
Q ss_pred EeeCCcEEEEeccCCeEEEEEccCceEEeec------c--------ccCCceeEEEEcCCCCEEEEecCCCcEEEEEccC
Q 024868 120 FSVDGSRFAAGGVDGHLRIMHWPSLRIILDE------P--------KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED 185 (261)
Q Consensus 120 ~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~------~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~ 185 (261)
+..+++++++.+.+|.+++||+.+++..... . .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4567889999999999999999988764332 1 1334688888898888777765 57889998765
Q ss_pred CcEEE
Q 024868 186 GVAWT 190 (261)
Q Consensus 186 ~~~~~ 190 (261)
+.-+.
T Consensus 97 ~~W~~ 101 (219)
T PF07569_consen 97 GCWIR 101 (219)
T ss_pred ceeEE
Confidence 54433
No 438
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.58 E-value=0.9 Score=39.82 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=50.6
Q ss_pred CCeEEEEEeeCCcEEEEeccCCeEEEEEccC----------ceE--Eee-c------c--ccCCceeEEEEcCC---CCE
Q 024868 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS----------LRI--ILD-E------P--KAHKSVLDMDFSLD---SEF 168 (261)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~----------~~~--~~~-~------~--~~~~~v~~~~~s~~---~~~ 168 (261)
-.|..+.+||+|++++..+..| |.|..+.. ++. ..+ . . .....|..+.|+|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4688899999999999988766 44444432 111 101 0 1 12236889999996 578
Q ss_pred EEEecCCCcEEEEEccCC
Q 024868 169 LATTSTDGSARIWKTEDG 186 (261)
Q Consensus 169 l~~~~~d~~i~iwd~~~~ 186 (261)
|+.-+.|+.+++||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 888889999999999753
No 439
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.52 E-value=0.33 Score=39.32 Aligned_cols=83 Identities=10% Similarity=0.092 Sum_probs=55.2
Q ss_pred CCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCc-eeEEEEc-CC----------------CCE-EEEec
Q 024868 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS-VLDMDFS-LD----------------SEF-LATTS 173 (261)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~s-~~----------------~~~-l~~~~ 173 (261)
..+.++..+|++++.++...-|.|.++|+.++..++-.++-.+. +.-+... +. ..+ ++-+-
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 45788999999999999888899999999887765444333221 1111111 10 112 33455
Q ss_pred CCCcEEEEEccCCcEEEEEeec
Q 024868 174 TDGSARIWKTEDGVAWTFLTRN 195 (261)
Q Consensus 174 ~d~~i~iwd~~~~~~~~~~~~~ 195 (261)
.-|.|.||++++|..+..+...
T Consensus 388 rRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 388 RRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred cCCeEEEEecCCCCEEEEEEeC
Confidence 6789999999999888777644
No 440
>PHA02790 Kelch-like protein; Provisional
Probab=95.44 E-value=1.3 Score=37.03 Aligned_cols=144 Identities=10% Similarity=0.070 Sum_probs=66.0
Q ss_pred eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC---cEEEEEEeCCc
Q 024868 20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG---GCKLFEVYGGA 96 (261)
Q Consensus 20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~~~~~~~ 96 (261)
.+.++||.++.. .+..||+....+...+ .++........+. -+|+..+.|+.++ .+..||..+..
T Consensus 320 ~iYviGG~~~~~------sve~ydp~~n~W~~~~----~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 320 KLYVVGGLPNPT------SVERWFHGDAAWVNMP----SLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred EEEEECCcCCCC------ceEEEECCCCeEEECC----CCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCE
Confidence 455666643321 4677888776652211 1221111122222 2677777777553 45667765543
Q ss_pred cccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEe--eccccCCceeEEEEcCCCCEEEEecC
Q 024868 97 TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTST 174 (261)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~ 174 (261)
- .. ...+..... ...+..-+++..+.|+ .+..||..+.+-.. .+....... +++ --+|+..+.|+.
T Consensus 388 W--~~----~~~m~~~r~-~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~ 455 (480)
T PHA02790 388 W--QF----GPSTYYPHY-KSCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGF 455 (480)
T ss_pred E--Ee----CCCCCCccc-cceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCc
Confidence 2 11 111111111 1122234677667664 46778876654321 111111112 222 226777777775
Q ss_pred C-----CcEEEEEccCCc
Q 024868 175 D-----GSARIWKTEDGV 187 (261)
Q Consensus 175 d-----~~i~iwd~~~~~ 187 (261)
+ ..+..||..+++
T Consensus 456 ~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 456 YRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCCcccceEEEEECCCCe
Confidence 4 235555555443
No 441
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.38 E-value=0.11 Score=38.24 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=49.4
Q ss_pred ECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCC--------CCCCCeEEEEEeeCCcEEEEeccCCeEEEEEcc
Q 024868 71 VNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL--------QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (261)
Q Consensus 71 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 142 (261)
+..++++|++.+.+|.+++||+...+....... ....+ .....|..+.++.+|.-+++- .+|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~S-i~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVS-IAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCcc-HHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccc
Confidence 345788899999999999999998775332210 00111 234678888888888877766 46778888864
Q ss_pred Cc
Q 024868 143 SL 144 (261)
Q Consensus 143 ~~ 144 (261)
-+
T Consensus 96 L~ 97 (219)
T PF07569_consen 96 LG 97 (219)
T ss_pred cc
Confidence 33
No 442
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.35 E-value=1.1 Score=35.77 Aligned_cols=196 Identities=14% Similarity=0.180 Sum_probs=106.0
Q ss_pred CcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEEC----CCCCe--EEEEec-C---Cc
Q 024868 17 ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVN----PSGDD--FVCSTT-N---GG 86 (261)
Q Consensus 17 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~~~~~-d---g~ 86 (261)
....+++....++ -++.||.+...+ . .+. .+.+..+..- -+|+. |+.++. + .+
T Consensus 66 p~kSlIigTdK~~--------GL~VYdL~Gk~l------q-~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~ 128 (381)
T PF02333_consen 66 PAKSLIIGTDKKG--------GLYVYDLDGKEL------Q-SLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNS 128 (381)
T ss_dssp GGG-EEEEEETTT--------EEEEEETTS-EE------E-EE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-E
T ss_pred cccceEEEEeCCC--------CEEEEcCCCcEE------E-eec--CCCcceeeeecceecCCceEEEEEEecCcCCCCe
Confidence 3456777666666 688899988775 1 222 2333333331 13443 444443 2 46
Q ss_pred EEEEEEeCCccccceeeeeCCC-CCCCCCeEEEEEe--e-CCc-EEEEeccCCeEEEEEcc---Cc----eEEeeccccC
Q 024868 87 CKLFEVYGGATDINLLAKKMPP-LQDAGPQKCLSFS--V-DGS-RFAAGGVDGHLRIMHWP---SL----RIILDEPKAH 154 (261)
Q Consensus 87 i~i~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s--~-~~~-~l~~~~~d~~i~~~d~~---~~----~~~~~~~~~~ 154 (261)
|++|.+.........+...... ......++.+++- | +|. +++....+|.+..|.+. ++ +.+++ +...
T Consensus 129 l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~-f~~~ 207 (381)
T PF02333_consen 129 LRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVRE-FKVG 207 (381)
T ss_dssp EEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEE-EE-S
T ss_pred EEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEE-ecCC
Confidence 9999997533211111110001 1122456777764 3 455 45556688988888764 22 22333 3344
Q ss_pred CceeEEEEcCCCCEEEEecCCCcEEEEEccC-----CcEEEEEee-cCCCceEEEEEec--CCCcceEEEEEeeCCCcEE
Q 024868 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTED-----GVAWTFLTR-NSDEKIELCRFSK--DGTKPFLFCTVQRGDKALL 226 (261)
Q Consensus 155 ~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~-----~~~~~~~~~-~~~~~v~~~~~~p--~~~~~~~~~~~~~~~d~~i 226 (261)
+.+..+........|+.+-.+.-|.-|+.+. ++.+..... +....+..++.-. +++- || +++...+++.
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~g-YL--ivSsQG~~sf 284 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKG-YL--IVSSQGDNSF 284 (381)
T ss_dssp S-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-E-EE--EEEEGGGTEE
T ss_pred CcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCe-EE--EEEcCCCCeE
Confidence 5788999988888999998888888888762 222222221 1223477777753 4554 33 5777788899
Q ss_pred EEEECCC
Q 024868 227 AVYDIST 233 (261)
Q Consensus 227 ~~~d~~~ 233 (261)
.+||.+.
T Consensus 285 ~Vy~r~~ 291 (381)
T PF02333_consen 285 AVYDREG 291 (381)
T ss_dssp EEEESST
T ss_pred EEEecCC
Confidence 9999875
No 443
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.19 E-value=1.2 Score=35.19 Aligned_cols=234 Identities=16% Similarity=0.162 Sum_probs=108.7
Q ss_pred eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEE--eeecCCCCCceEEEECCC----CCeEEE
Q 024868 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVT--YVFDESEGDPMTIAVNPS----GDDFVC 80 (261)
Q Consensus 7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~----~~~l~~ 80 (261)
...++|.|+ ..++++ ...| +|+.++.+... ...... ............++++|+ +...++
T Consensus 4 P~~~a~~pd---G~l~v~-e~~G--------~i~~~~~~g~~--~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~ 69 (331)
T PF07995_consen 4 PRSMAFLPD---GRLLVA-ERSG--------RIWVVDKDGSL--KTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVY 69 (331)
T ss_dssp EEEEEEETT---SCEEEE-ETTT--------EEEEEETTTEE--CEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEE
T ss_pred ceEEEEeCC---CcEEEE-eCCc--------eEEEEeCCCcC--cceecccccccccccCCcccceeccccCCCCEEEEE
Confidence 357899986 445554 4477 89988843332 111111 122334457899999994 333333
Q ss_pred EecC--------CcEEEEEEeCCcc----ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC-------------e
Q 024868 81 STTN--------GGCKLFEVYGGAT----DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-------------H 135 (261)
Q Consensus 81 ~~~d--------g~i~i~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-------------~ 135 (261)
.+.. ..|.-|....... ...++............-..|.|.|||.+.++.+..+ .
T Consensus 70 ~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ 149 (331)
T PF07995_consen 70 YTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGK 149 (331)
T ss_dssp EEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTE
T ss_pred EEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccce
Confidence 3321 2455566655411 1111111111011233456799999998777655332 2
Q ss_pred EEEEEccCceEEe-------------eccccCCceeEEEEcCC-CCEEEEe-cCCCcEEEEEccCCc-------------
Q 024868 136 LRIMHWPSLRIIL-------------DEPKAHKSVLDMDFSLD-SEFLATT-STDGSARIWKTEDGV------------- 187 (261)
Q Consensus 136 i~~~d~~~~~~~~-------------~~~~~~~~v~~~~~s~~-~~~l~~~-~~d~~i~iwd~~~~~------------- 187 (261)
|.-.+. .++... .+-........++|+|. |+++++- +.+..=.|--+..|.
T Consensus 150 ilri~~-dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~ 228 (331)
T PF07995_consen 150 ILRIDP-DGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKY 228 (331)
T ss_dssp EEEEET-TSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCST
T ss_pred EEEecc-cCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCC
Confidence 322332 121100 00011123568999998 7765542 223222222222111
Q ss_pred ----------------EEEEEeecCCCceEEEEEecCCCcc-----eEEEEEeeCCCcEEEEEECCCCeEEeee----ec
Q 024868 188 ----------------AWTFLTRNSDEKIELCRFSKDGTKP-----FLFCTVQRGDKALLAVYDISTWNKIGHK----RL 242 (261)
Q Consensus 188 ----------------~~~~~~~~~~~~v~~~~~~p~~~~~-----~~~~~~~~~~d~~i~~~d~~~~~~~~~~----~~ 242 (261)
+...+. ++. .+..+.|....++. + ++..-..+.|...++..+..+... ..
T Consensus 229 ~~~~~~~~~~~~~~~~P~~~~~-~~~-ap~G~~~y~g~~fp~~~g~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 303 (331)
T PF07995_consen 229 SGPPIGDAPSCPGFVPPVFAYP-PHS-APTGIIFYRGSAFPEYRGDL---FVADYGGGRIWRLDLDEDGSVTEEEEFLGG 303 (331)
T ss_dssp TSS-ECTGSS-TTS---SEEET-TT---EEEEEEE-SSSSGGGTTEE---EEEETTTTEEEEEEEETTEEEEEEEEECTT
T ss_pred CCCccccccCCCCcCccceeec-Ccc-ccCceEEECCccCccccCcE---EEecCCCCEEEEEeeecCCCccceEEcccc
Confidence 122222 122 36667776543320 1 344444667888887655433211 12
Q ss_pred cCcCeeEEEEeeCCCEEe
Q 024868 243 LRKPASVLSISLDGKYLA 260 (261)
Q Consensus 243 ~~~~v~~~~~s~dg~~la 260 (261)
....+.++++.|||.+.+
T Consensus 304 ~~~r~~~v~~~pDG~Lyv 321 (331)
T PF07995_consen 304 FGGRPRDVAQGPDGALYV 321 (331)
T ss_dssp SSS-EEEEEEETTSEEEE
T ss_pred CCCCceEEEEcCCCeEEE
Confidence 334789999999998765
No 444
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=95.19 E-value=0.15 Score=26.02 Aligned_cols=42 Identities=24% Similarity=0.247 Sum_probs=28.5
Q ss_pred cCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEe
Q 024868 207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS 253 (261)
Q Consensus 207 p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 253 (261)
|+++++| ++...+++|.++|..+++.+..+.. ......+.|+
T Consensus 1 pd~~~ly----v~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLY----VTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS 42 (42)
T ss_pred CCCCEEE----EEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence 5677642 4455678999999999888776665 3444556553
No 445
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=95.15 E-value=1.5 Score=36.10 Aligned_cols=114 Identities=11% Similarity=0.052 Sum_probs=60.1
Q ss_pred CCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC------cEEEEec----
Q 024868 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG------SRFAAGG---- 131 (261)
Q Consensus 62 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------~~l~~~~---- 131 (261)
.-.....++|.|||+.|++--..|.|++++-.+..................+....++++|+- .+|....
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 345688999999998776644369999987554332111000001011135677899999874 2343331
Q ss_pred ------cCCeEEEEEccCc-------eEEee-cccc-CCceeEEEEcCCCCEEEEecCC
Q 024868 132 ------VDGHLRIMHWPSL-------RIILD-EPKA-HKSVLDMDFSLDSEFLATTSTD 175 (261)
Q Consensus 132 ------~d~~i~~~d~~~~-------~~~~~-~~~~-~~~v~~~~~s~~~~~l~~~~~d 175 (261)
....|.-|.+... +.+.. .... ...-..|.|.|||.++++.++.
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1223444544311 11211 1111 0124568899999877765543
No 446
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.11 E-value=2 Score=37.32 Aligned_cols=155 Identities=8% Similarity=0.028 Sum_probs=86.7
Q ss_pred CCeEEEEecCCcEEEEEEeCCccccc------eee-eeCCC--------CCCCCCeEEEEEee--CCcEEEEeccCCeEE
Q 024868 75 GDDFVCSTTNGGCKLFEVYGGATDIN------LLA-KKMPP--------LQDAGPQKCLSFSV--DGSRFAAGGVDGHLR 137 (261)
Q Consensus 75 ~~~l~~~~~dg~i~i~~~~~~~~~~~------~~~-~~~~~--------~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~ 137 (261)
.++++++ ..+.|.||+...-..... ... ..... ......|+.|...- +...|+.+..||.|.
T Consensus 49 ~n~LFiA-~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIA-YQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEE-ECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 5666665 477799999865433111 000 00000 00123455555544 335678888999999
Q ss_pred EEEccC-------c----eE---E-----eeccccCCceeEEEEc--CCCCEEEEecCCCcEEEEEccCC--cEEEEEee
Q 024868 138 IMHWPS-------L----RI---I-----LDEPKAHKSVLDMDFS--LDSEFLATTSTDGSARIWKTEDG--VAWTFLTR 194 (261)
Q Consensus 138 ~~d~~~-------~----~~---~-----~~~~~~~~~v~~~~~s--~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~ 194 (261)
+|.+++ . +. . .-.......+++++++ ...++||+++....|.||-.... +....-..
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence 997631 1 00 0 0011122367899998 77888888888788888765432 11111011
Q ss_pred cCCCceEEEEEecCCC--cceEEEEEeeCCCcEEEEEEC
Q 024868 195 NSDEKIELCRFSKDGT--KPFLFCTVQRGDKALLAVYDI 231 (261)
Q Consensus 195 ~~~~~v~~~~~~p~~~--~~~~~~~~~~~~d~~i~~~d~ 231 (261)
.....|.+++|-++.. .-+ ..++.++-.|.+.+|++
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~-v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGH-VKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccCCCeeEeecCCCCCccc-eEEEEEeccCcEEEEEE
Confidence 1233488999987652 101 11567778888888887
No 447
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=94.88 E-value=1.2 Score=33.37 Aligned_cols=148 Identities=11% Similarity=0.077 Sum_probs=79.7
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC---CcEEEEEEeCCccccceeeeeCCCCCCCCC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGP 114 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (261)
.-..||+.+.++.. .......-+.+=.+-+||+.|.+|+.. ..+++++-........ .......+.....
T Consensus 47 ~s~~yD~~tn~~rp------l~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~-w~e~~~~m~~~RW 119 (243)
T PF07250_consen 47 HSVEYDPNTNTFRP------LTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCD-WTESPNDMQSGRW 119 (243)
T ss_pred EEEEEecCCCcEEe------ccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCC-ceECcccccCCCc
Confidence 55678887776411 111122233444577899999888752 3577777644111000 1111111333333
Q ss_pred eEEEEEeeCCcEEEEeccCC-eEEEEEccC--ceEE-eecccc-----C-CceeEEEEcCCCCEEEEecCCCcEEEEEcc
Q 024868 115 QKCLSFSVDGSRFAAGGVDG-HLRIMHWPS--LRII-LDEPKA-----H-KSVLDMDFSLDSEFLATTSTDGSARIWKTE 184 (261)
Q Consensus 115 v~~~~~s~~~~~l~~~~~d~-~i~~~d~~~--~~~~-~~~~~~-----~-~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~ 184 (261)
--...--|||+.|+.|+... +..+|.-.. .... ..+... . .--..+-..|+|++++.+..+ -.|||..
T Consensus 120 YpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~ 197 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYK 197 (243)
T ss_pred cccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCC
Confidence 44455567999999988664 344554321 1111 111110 1 112356668999999998764 4677988
Q ss_pred CCcEEEEEee
Q 024868 185 DGVAWTFLTR 194 (261)
Q Consensus 185 ~~~~~~~~~~ 194 (261)
+.+.++.+..
T Consensus 198 ~n~v~~~lP~ 207 (243)
T PF07250_consen 198 TNTVVRTLPD 207 (243)
T ss_pred CCeEEeeCCC
Confidence 8877666653
No 448
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.87 E-value=0.22 Score=25.41 Aligned_cols=40 Identities=10% Similarity=-0.050 Sum_probs=28.5
Q ss_pred CCCCEEEEec-CCCcEEEEEccCCcEEEEEeecCCCceEEEEE
Q 024868 164 LDSEFLATTS-TDGSARIWKTEDGVAWTFLTRNSDEKIELCRF 205 (261)
Q Consensus 164 ~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 205 (261)
|++++|+++. .+++|.++|..+++.+..+.... ....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~--~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG--YPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC--CCceEEe
Confidence 5777666655 57899999999998888777532 2455555
No 449
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=94.62 E-value=3.2 Score=37.11 Aligned_cols=166 Identities=11% Similarity=0.066 Sum_probs=94.9
Q ss_pred CCCCCceEEEEC---C----CCCeEEEEecCCcEEEEEEe------CCccc-cceeeeeCCCCC----CCCCeEEEEEee
Q 024868 61 ESEGDPMTIAVN---P----SGDDFVCSTTNGGCKLFEVY------GGATD-INLLAKKMPPLQ----DAGPQKCLSFSV 122 (261)
Q Consensus 61 ~~~~~v~~~~~~---~----~~~~l~~~~~dg~i~i~~~~------~~~~~-~~~~~~~~~~~~----~~~~v~~~~~s~ 122 (261)
....+|..|+|. . ..++|++ -....+.|+... ..... ..+.......+. +..+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456789999998 2 2235555 455568888722 11110 111111111111 345778999999
Q ss_pred -CCcEEEEeccCCeEEEEEccCce----EEeecc-cc----------CCceeEEEEcCCCCEEEEecCCCcEEEEEccCC
Q 024868 123 -DGSRFAAGGVDGHLRIMHWPSLR----IILDEP-KA----------HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG 186 (261)
Q Consensus 123 -~~~~l~~~~~d~~i~~~d~~~~~----~~~~~~-~~----------~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~ 186 (261)
+.+.||+....|.-.+|++.... ...... .. ...-..+.|.++-+.|+.++. ..+.++|+++.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 56789999999999999992111 001110 11 122347889888777777764 66899999877
Q ss_pred cEEE-EEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868 187 VAWT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (261)
Q Consensus 187 ~~~~-~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~ 233 (261)
.... .........+..+.-+|+.... ++ +.+. ..|...|+..
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~-~F-iLTs---~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSH-VF-ILTS---KEIIWLDVKS 277 (765)
T ss_pred CccchhccCCChhheeeEEecCCccce-EE-EEec---CeEEEEEccC
Confidence 6533 2333334468888888874431 11 2222 3466666554
No 450
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.46 E-value=0.9 Score=37.53 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=50.4
Q ss_pred CeEEEEEeeCCcEEEEeccCCeEEEEEc---------cCceEE--eec-------ccc--CCceeEEEEcCCC---CEEE
Q 024868 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHW---------PSLRII--LDE-------PKA--HKSVLDMDFSLDS---EFLA 170 (261)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~~d~~i~~~d~---------~~~~~~--~~~-------~~~--~~~v~~~~~s~~~---~~l~ 170 (261)
.|..+..++.|..++..+.+|-+.++-. +.++.. .+. +.. +-.+...+|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 4677888999999999989996655531 223211 111 111 1146788999975 5677
Q ss_pred EecCCCcEEEEEccCCcEE
Q 024868 171 TTSTDGSARIWKTEDGVAW 189 (261)
Q Consensus 171 ~~~~d~~i~iwd~~~~~~~ 189 (261)
.-+.|+.+++||+.....+
T Consensus 185 iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEecCcEEEEEecCCcchh
Confidence 7778999999999765443
No 451
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=94.44 E-value=2.2 Score=35.19 Aligned_cols=54 Identities=13% Similarity=0.224 Sum_probs=36.6
Q ss_pred CCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE--Eeecc-----ccCCceeEEEEcCCC
Q 024868 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI--ILDEP-----KAHKSVLDMDFSLDS 166 (261)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~-----~~~~~v~~~~~s~~~ 166 (261)
.....|+|.|||++|++--..|.|++++..++.. +..+. ...+....|+++|+-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 3457899999998887764469999987654432 11111 124568999999874
No 452
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.44 E-value=1.7 Score=37.51 Aligned_cols=86 Identities=14% Similarity=0.150 Sum_probs=49.5
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee--c--cccCCceeEE
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD--E--PKAHKSVLDM 160 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~--~~~~~~v~~~ 160 (261)
-.|+||++.+... ....-.++.+-.+.|+.+..+|+. ..+|++++|++... .+.. . ......|..+
T Consensus 64 ~~I~If~~sG~lL--------~~~~w~~~~lI~mgWs~~eeLI~v-~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec 133 (829)
T KOG2280|consen 64 PYIRIFNISGQLL--------GRILWKHGELIGMGWSDDEELICV-QKDGTVHVYGLLGE-FIESNSVGFESQMSDIVEC 133 (829)
T ss_pred eeEEEEeccccch--------HHHHhcCCCeeeecccCCceEEEE-eccceEEEeecchh-hhcccccccccccCceeEE
Confidence 4578888866543 111222447888999987766555 49999999997532 2222 1 1112246666
Q ss_pred EEcCCCCEEEEecCCCcEEEEE
Q 024868 161 DFSLDSEFLATTSTDGSARIWK 182 (261)
Q Consensus 161 ~~s~~~~~l~~~~~d~~i~iwd 182 (261)
.+..+|-.+.+. +|++.+-.
T Consensus 134 ~~f~~GVavlt~--~g~v~~i~ 153 (829)
T KOG2280|consen 134 RFFHNGVAVLTV--SGQVILIN 153 (829)
T ss_pred EEecCceEEEec--CCcEEEEc
Confidence 666566444443 45554443
No 453
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=94.27 E-value=0.9 Score=32.08 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=24.8
Q ss_pred ceeEEEEcCCC------CEEEEecCCCcEEEEEccC
Q 024868 156 SVLDMDFSLDS------EFLATTSTDGSARIWKTED 185 (261)
Q Consensus 156 ~v~~~~~s~~~------~~l~~~~~d~~i~iwd~~~ 185 (261)
.+..++|||.| -+|++.+.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78999999954 2788888999999998663
No 454
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.25 E-value=0.0055 Score=49.15 Aligned_cols=136 Identities=15% Similarity=0.244 Sum_probs=91.4
Q ss_pred EEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEE-EecCCCcEEEEEccCCcEEEEEee
Q 024868 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVAWTFLTR 194 (261)
Q Consensus 116 ~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~ 194 (261)
....|-|.+.-++.++.+..+..||- .++... .....+....++|.-++..++ .+-..+.+.+||+.+... .++..
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~-agq~~l-e~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~ 114 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDK-AGQVIL-ELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLES 114 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhh-hcceec-ccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhc
Confidence 44678887777888888999999984 344322 223344567788888777554 455678999999975432 22221
Q ss_pred cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEE
Q 024868 195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL 259 (261)
Q Consensus 195 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 259 (261)
.....-.-+.|++.... ++.+...+.+.+|+..+.+.+.....|...+.+++|.+.+..+
T Consensus 115 gg~~s~sll~wsKg~~e-----l~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi 174 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPE-----LVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI 174 (615)
T ss_pred cCcchHHHHhhccCCcc-----ccccccccceEEEeccchhhhhhhcccccceeEEEecccceee
Confidence 11111222678888887 5667788999999998766654444477788899998877654
No 455
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.04 E-value=0.68 Score=40.08 Aligned_cols=118 Identities=13% Similarity=0.109 Sum_probs=72.1
Q ss_pred ceEEEECC--CCCeEEEEecCCcEEEEEEeCCcccc------------ceeeeeCCCCCCCCCeEEEEEe--eCCcEEEE
Q 024868 66 PMTIAVNP--SGDDFVCSTTNGGCKLFEVYGGATDI------------NLLAKKMPPLQDAGPQKCLSFS--VDGSRFAA 129 (261)
Q Consensus 66 v~~~~~~~--~~~~l~~~~~dg~i~i~~~~~~~~~~------------~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~ 129 (261)
|+.+.... ....|+.+.+||.|.+|..+.-.... .......-.+.-...+.++++. ...++||+
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV 182 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV 182 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence 44454433 44578888999999999874311000 0000001111224577889998 77889999
Q ss_pred eccCCeEEEEEccCceEE-eec--cccCCceeEEEEcCCC---C---EEEEecCCCcEEEEEc
Q 024868 130 GGVDGHLRIMHWPSLRII-LDE--PKAHKSVLDMDFSLDS---E---FLATTSTDGSARIWKT 183 (261)
Q Consensus 130 ~~~d~~i~~~d~~~~~~~-~~~--~~~~~~v~~~~~s~~~---~---~l~~~~~d~~i~iwd~ 183 (261)
++....|.||-....+.. ... ..+...|.+++|-++. . .+++++-.|.+.+|++
T Consensus 183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 988888887765442111 111 1233468899997643 2 7788888999999887
No 456
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=93.77 E-value=0.56 Score=39.90 Aligned_cols=70 Identities=23% Similarity=0.267 Sum_probs=44.1
Q ss_pred CCcEEEEeccCCeEEEEEccC----ceEEee--------------ccc--------cCCceeEEEEcC----CCCEEEEe
Q 024868 123 DGSRFAAGGVDGHLRIMHWPS----LRIILD--------------EPK--------AHKSVLDMDFSL----DSEFLATT 172 (261)
Q Consensus 123 ~~~~l~~~~~d~~i~~~d~~~----~~~~~~--------------~~~--------~~~~v~~~~~s~----~~~~l~~~ 172 (261)
+...++.+..||.+....... +..... +.. .......+++++ +..++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 666778888899888777654 111100 000 012355566666 67899999
Q ss_pred cCCCcEEEEEccCCcEEEEE
Q 024868 173 STDGSARIWKTEDGVAWTFL 192 (261)
Q Consensus 173 ~~d~~i~iwd~~~~~~~~~~ 192 (261)
+.|+.+|+||+.+++++.+.
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEe
Confidence 99999999999999997665
No 457
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.59 E-value=2.4 Score=35.19 Aligned_cols=82 Identities=13% Similarity=0.202 Sum_probs=50.3
Q ss_pred CceEEEECCCCCeEEEEecCCcEEEEEEe----------CCccccc----eeeeeCCCCCCCCCeEEEEEeeCC---cEE
Q 024868 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVY----------GGATDIN----LLAKKMPPLQDAGPQKCLSFSVDG---SRF 127 (261)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~----------~~~~~~~----~~~~~~~~~~~~~~v~~~~~s~~~---~~l 127 (261)
.|..+..++.|..++-.+.+| +.+..+. +++.... .+..........-.+...+|+|+. ..+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~G-i~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKG-LMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCCceEEEecCCe-eEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 377888899999999888899 4454441 1211000 001111111122356778999975 566
Q ss_pred EEeccCCeEEEEEccCceEE
Q 024868 128 AAGGVDGHLRIMHWPSLRII 147 (261)
Q Consensus 128 ~~~~~d~~i~~~d~~~~~~~ 147 (261)
..-..|..+++||+.....+
T Consensus 184 ~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEecCcEEEEEecCCcchh
Confidence 66678999999998765544
No 458
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=93.46 E-value=2.8 Score=32.26 Aligned_cols=117 Identities=14% Similarity=0.149 Sum_probs=65.5
Q ss_pred eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEec------CCCcEEEEEccCCcEEEEEeec----CCCceEEEE
Q 024868 135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS------TDGSARIWKTEDGVAWTFLTRN----SDEKIELCR 204 (261)
Q Consensus 135 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~~----~~~~v~~~~ 204 (261)
.|.+||..+.+-..--..-.+.|..+.|..+.++++.|. ....+..||+.+.... .+... -.+++..+.
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTALT 95 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEEEE
Confidence 488999776553222222345799999987777777664 2456888998766532 23221 234677777
Q ss_pred Eec-CCCcceEEEEEeeCCCcEEEEEECCCCeEEee-eeccCcCeeEEEEe
Q 024868 205 FSK-DGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSIS 253 (261)
Q Consensus 205 ~~p-~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s 253 (261)
+.. |+..+++.--. ...+..|..||=.++..+.. .......|..+.+-
T Consensus 96 ~~~~d~~~~~~aG~~-~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~ 145 (281)
T PF12768_consen 96 FISNDGSNFWVAGRS-ANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL 145 (281)
T ss_pred eeccCCceEEEecee-cCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence 643 33332221111 33345688888776665543 22223455555443
No 459
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.03 E-value=5.7 Score=34.62 Aligned_cols=55 Identities=13% Similarity=0.155 Sum_probs=39.4
Q ss_pred CceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCC
Q 024868 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209 (261)
Q Consensus 155 ~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~ 209 (261)
+.+..+..||+.++|+-=...|.|.+-+.+..++...+......+.-.++|.-+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 4577888999999999888889999888877776666653333334466676554
No 460
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.01 E-value=4 Score=32.85 Aligned_cols=152 Identities=13% Similarity=0.059 Sum_probs=81.6
Q ss_pred CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecccc
Q 024868 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153 (261)
Q Consensus 74 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 153 (261)
+++ +..+..+|.+.-.|..++....... .......+..-.+..+|+ |++++.++.++.+|.++++.+......
T Consensus 68 dg~-v~~~~~~G~i~A~d~~~g~~~W~~~-----~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~ 140 (370)
T COG1520 68 DGT-VYVGTRDGNIFALNPDTGLVKWSYP-----LLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVG 140 (370)
T ss_pred CCe-EEEecCCCcEEEEeCCCCcEEeccc-----CcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecC
Confidence 444 4445677877777777776322110 000011222233333676 667778888999998888887766544
Q ss_pred C-CceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecC--CCceEEEEEecCCCcceEEEEEeeCC--CcEEEE
Q 024868 154 H-KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS--DEKIELCRFSKDGTKPFLFCTVQRGD--KALLAV 228 (261)
Q Consensus 154 ~-~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~~~~~~~~~~~~--d~~i~~ 228 (261)
. -.+.....-.++ .++..+.++.+.-.|..+|+......... ...+...-...++.. ..+.. ++.+.-
T Consensus 141 ~~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~v------y~~~~~~~~~~~a 213 (370)
T COG1520 141 GSPYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTV------YVGSDGYDGILYA 213 (370)
T ss_pred CCeEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceE------EEecCCCcceEEE
Confidence 4 111111222233 34444477889999988888876654322 111111111223332 33333 556777
Q ss_pred EECCCCeEEee
Q 024868 229 YDISTWNKIGH 239 (261)
Q Consensus 229 ~d~~~~~~~~~ 239 (261)
.|+.+|+....
T Consensus 214 ~~~~~G~~~w~ 224 (370)
T COG1520 214 LNAEDGTLKWS 224 (370)
T ss_pred EEccCCcEeee
Confidence 78877776543
No 461
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.99 E-value=3.1 Score=31.59 Aligned_cols=177 Identities=15% Similarity=0.071 Sum_probs=95.6
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEE
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC 117 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 117 (261)
.+-..|+.+++. ...--+.......+..-|||...++-+.. -|.-.|-++.+. +.+ .............
T Consensus 84 aiGhLdP~tGev------~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev--t~f--~lp~~~a~~nlet 152 (353)
T COG4257 84 AIGHLDPATGEV------ETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV--TRF--PLPLEHADANLET 152 (353)
T ss_pred cceecCCCCCce------EEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce--EEe--ecccccCCCcccc
Confidence 555677777664 22222334456788888998876653222 244444433332 111 1111122356677
Q ss_pred EEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC-CceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecC
Q 024868 118 LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS 196 (261)
Q Consensus 118 ~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 196 (261)
..|.++|++-+++. .|.---.|-.++.. ..+.... ...+.|+..|||..-++.-.++.|-..|..++... .+....
T Consensus 153 ~vfD~~G~lWFt~q-~G~yGrLdPa~~~i-~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~ae-v~p~P~ 229 (353)
T COG4257 153 AVFDPWGNLWFTGQ-IGAYGRLDPARNVI-SVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAE-VVPQPN 229 (353)
T ss_pred eeeCCCccEEEeec-cccceecCcccCce-eeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcc-eecCCC
Confidence 88999999888874 22211122221111 1122222 24678999999998888777888888887776332 222111
Q ss_pred --CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868 197 --DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (261)
Q Consensus 197 --~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~ 233 (261)
....+.+--+|.|+. -++....+.+..||-..
T Consensus 230 ~~~~gsRriwsdpig~~-----wittwg~g~l~rfdPs~ 263 (353)
T COG4257 230 ALKAGSRRIWSDPIGRA-----WITTWGTGSLHRFDPSV 263 (353)
T ss_pred cccccccccccCccCcE-----EEeccCCceeeEeCccc
Confidence 112445545666664 34555566777777543
No 462
>PLN02153 epithiospecifier protein
Probab=92.88 E-value=3.9 Score=32.45 Aligned_cols=163 Identities=10% Similarity=0.087 Sum_probs=72.0
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCC-CCceEEEECCCCCeEEEEecC-----CcEEEEEE
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAVNPSGDDFVCSTTN-----GGCKLFEV 92 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~ 92 (261)
..+++.||.+.... ...-.++.||+.+..+...+... ..+... .....+.+ +++.++.|+.+ ..+.+||.
T Consensus 33 ~~iyv~GG~~~~~~-~~~~~~~~yd~~~~~W~~~~~~~-~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 33 DKLYSFGGELKPNE-HIDKDLYVFDFNTHTWSIAPANG-DVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CEEEEECCccCCCC-ceeCcEEEEECCCCEEEEcCccC-CCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEEC
Confidence 45666776542110 00115888998887763211100 000000 01122222 45666777653 34677777
Q ss_pred eCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC-----------CeEEEEEccCceEEeecccc----CC-c
Q 024868 93 YGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----------GHLRIMHWPSLRIILDEPKA----HK-S 156 (261)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------~~i~~~d~~~~~~~~~~~~~----~~-~ 156 (261)
.+..- ..+................+..-+++.++.|+.+ ..+.+||..+.+=.. +... .. .
T Consensus 109 ~t~~W--~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~r~ 185 (341)
T PLN02153 109 VKNEW--TFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEKRG 185 (341)
T ss_pred CCCEE--EEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCCCC
Confidence 65432 1111000000001111222223466777777743 247788877654321 1111 11 1
Q ss_pred eeEEEEcCCCCEEEEecCC-------------CcEEEEEccCCcEE
Q 024868 157 VLDMDFSLDSEFLATTSTD-------------GSARIWKTEDGVAW 189 (261)
Q Consensus 157 v~~~~~s~~~~~l~~~~~d-------------~~i~iwd~~~~~~~ 189 (261)
-.+++. -++++++.++.+ ..+.+||..+.+-.
T Consensus 186 ~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 186 GAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred cceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence 112222 256665555421 45888998876544
No 463
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=92.60 E-value=0.58 Score=23.45 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=19.2
Q ss_pred cCCceeEEEEcCCCCEEEEecC-C--CcEEEE
Q 024868 153 AHKSVLDMDFSLDSEFLATTST-D--GSARIW 181 (261)
Q Consensus 153 ~~~~v~~~~~s~~~~~l~~~~~-d--~~i~iw 181 (261)
....-....|||||+.|+.++. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445778999999998876653 4 555554
No 464
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.51 E-value=0.34 Score=42.52 Aligned_cols=75 Identities=16% Similarity=0.345 Sum_probs=46.3
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEE-----------ECCC
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIA-----------VNPS 74 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~ 74 (261)
++.-+.|.|---...++.++..++. +.+..||..... .+.+|...+..++ .+||
T Consensus 182 ~~~~V~wcp~~~~~~~ic~~~~~~~------i~lL~~~ra~~~---------l~rsHs~~~~d~a~~~~g~~~l~~lSpD 246 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNKVYICYGLKGGE------IRLLNINRALRS---------LFRSHSQRVTDMAFFAEGVLKLASLSPD 246 (1283)
T ss_pred CcceeeecccccccceeeeccCCCc------eeEeeechHHHH---------HHHhcCCCcccHHHHhhchhhheeeCCC
Confidence 3455667664323445556655552 266666654333 2445655544433 5899
Q ss_pred CCeEEEEecCCcEEEEEEeCC
Q 024868 75 GDDFVCSTTNGGCKLFEVYGG 95 (261)
Q Consensus 75 ~~~l~~~~~dg~i~i~~~~~~ 95 (261)
|..++....||.++.|.+.-.
T Consensus 247 Gtv~a~a~~dG~v~f~Qiyi~ 267 (1283)
T KOG1916|consen 247 GTVFAWAISDGSVGFYQIYIT 267 (1283)
T ss_pred CcEEEEeecCCccceeeeeee
Confidence 999999999999988887643
No 465
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=92.30 E-value=4.6 Score=31.79 Aligned_cols=66 Identities=11% Similarity=0.074 Sum_probs=34.5
Q ss_pred CCCeEEEEecC-----CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC----eEEEEEccCc
Q 024868 74 SGDDFVCSTTN-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG----HLRIMHWPSL 144 (261)
Q Consensus 74 ~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~----~i~~~d~~~~ 144 (261)
+++..+.|+.. ..+..||..+.+- .. ...+....+........++++.+.|+.++ .+..||..+.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W--~~----~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEW--FE----LPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCe--eE----CCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 45666666542 3577777765442 11 11111111222233345678888887653 3567887765
Q ss_pred e
Q 024868 145 R 145 (261)
Q Consensus 145 ~ 145 (261)
+
T Consensus 197 ~ 197 (323)
T TIGR03548 197 Q 197 (323)
T ss_pred e
Confidence 4
No 466
>PRK13615 lipoprotein LpqB; Provisional
Probab=92.12 E-value=6.9 Score=33.41 Aligned_cols=139 Identities=11% Similarity=0.112 Sum_probs=80.8
Q ss_pred EEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEcc-CCcEEEE-Ee
Q 024868 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-DGVAWTF-LT 193 (261)
Q Consensus 116 ~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~-~~~~~~~-~~ 193 (261)
.+++.++++..++....++.+.++.... .. .... ....+...+|.++| .+-+.-.+...++.... +|+.... ..
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~-~~-~~~~-~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~ 412 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDR-DA-VLLD-TRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVAVS 412 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCC-cc-eeec-cCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEeecc
Confidence 6789999999988887777777775541 21 1121 12346778888887 55554443344544443 2443221 12
Q ss_pred ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC--CC--eEE--e--eeeccCcCeeEEEEeeCCCEEe
Q 024868 194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TW--NKI--G--HKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 194 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~--~~--~~~--~--~~~~~~~~v~~~~~s~dg~~la 260 (261)
...+..|..+..|+||....+ ++.....++|++--+. .+ ..+ . .+......+.++.|..+++.++
T Consensus 413 ~~~~~~I~~lrvSrDG~R~Av--i~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laV 485 (557)
T PRK13615 413 WTATGRVVSLEVARDGARVLV--QLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVAT 485 (557)
T ss_pred ccCCCeeEEEEeCCCccEEEE--EEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEE
Confidence 223446999999999998432 3334445667664332 22 112 1 1111224788999999988654
No 467
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=91.79 E-value=2 Score=38.24 Aligned_cols=79 Identities=20% Similarity=0.187 Sum_probs=50.7
Q ss_pred CCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEE-ecCCC-----cEEEEEccCC-cEEEEEeecCCCceEEEEE
Q 024868 133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLAT-TSTDG-----SARIWKTEDG-VAWTFLTRNSDEKIELCRF 205 (261)
Q Consensus 133 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~-----~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~ 205 (261)
.+.|.+-|...............++.+.+|||||+.|+. .+..+ .|++-|+.+. .-+-.+... ...|..-..
T Consensus 328 ~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve-~aaiprwrv 406 (912)
T TIGR02171 328 TGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVE-NAAIPRWRV 406 (912)
T ss_pred CCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecc-cccccceEe
Confidence 357888887654443321555678999999999999987 44443 4888888753 222333322 334666666
Q ss_pred ecCCCcc
Q 024868 206 SKDGTKP 212 (261)
Q Consensus 206 ~p~~~~~ 212 (261)
.++|...
T Consensus 407 ~e~gdt~ 413 (912)
T TIGR02171 407 LENGDTV 413 (912)
T ss_pred cCCCCeE
Confidence 7777763
No 468
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.45 E-value=2.1 Score=36.50 Aligned_cols=76 Identities=20% Similarity=0.174 Sum_probs=43.4
Q ss_pred CCCCeEEEEecCCcEEEEEEeCCc---cccc-----------eeeeeCCC-----CCCCCCeEEEEEee----CCcEEEE
Q 024868 73 PSGDDFVCSTTNGGCKLFEVYGGA---TDIN-----------LLAKKMPP-----LQDAGPQKCLSFSV----DGSRFAA 129 (261)
Q Consensus 73 ~~~~~l~~~~~dg~i~i~~~~~~~---~~~~-----------~~~~~~~~-----~~~~~~v~~~~~s~----~~~~l~~ 129 (261)
++...++.+..||.+......... .... .+...... .........+++++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 466778888899988888876511 1000 00000000 01123456666666 6778889
Q ss_pred eccCCeEEEEEccCceEEe
Q 024868 130 GGVDGHLRIMHWPSLRIIL 148 (261)
Q Consensus 130 ~~~d~~i~~~d~~~~~~~~ 148 (261)
.+.|+++++||+.+++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~ 254 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLA 254 (547)
T ss_dssp EETTSEEEEEETTTTCEEE
T ss_pred EeCCCeEEEEECCCCeEEE
Confidence 9999999999999988844
No 469
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=91.28 E-value=5.5 Score=30.66 Aligned_cols=118 Identities=14% Similarity=0.121 Sum_probs=63.6
Q ss_pred ceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe------cCCcEEEEEEeCCccccceeeeeCCCC
Q 024868 36 VLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST------TNGGCKLFEVYGGATDINLLAKKMPPL 109 (261)
Q Consensus 36 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~i~~~~~~~~~~~~~~~~~~~~ 109 (261)
+--+..||..+.++ ...-.+-.+.|+++.|..+.+.++.|. ....+..||..+..- ....... .-
T Consensus 15 C~~lC~yd~~~~qW------~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w--~~~~~~~-s~ 85 (281)
T PF12768_consen 15 CPGLCLYDTDNSQW------SSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW--SSLGGGS-SN 85 (281)
T ss_pred CCEEEEEECCCCEe------ecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee--eecCCcc-cc
Confidence 44688889888887 223333457899999987666666664 245678888877642 1110000 00
Q ss_pred CCCCCeEEEEEee-CCc-EEEEec-c--CCeEEEEEccCceEEee-ccccCCceeEEEE
Q 024868 110 QDAGPQKCLSFSV-DGS-RFAAGG-V--DGHLRIMHWPSLRIILD-EPKAHKSVLDMDF 162 (261)
Q Consensus 110 ~~~~~v~~~~~s~-~~~-~l~~~~-~--d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~ 162 (261)
.-.+++..+.+.. |+. ..+.|. . +..|..||-.+-..+.. .......|..+.+
T Consensus 86 ~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~ 144 (281)
T PF12768_consen 86 SIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV 144 (281)
T ss_pred cCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence 1136777777754 444 333433 2 33466676443333322 1222234555544
No 470
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=91.26 E-value=6.4 Score=31.38 Aligned_cols=48 Identities=23% Similarity=0.178 Sum_probs=33.5
Q ss_pred eEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 213 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+++++..+..+|.+.-||..+.... .+...-...+.++.|||+.++++
T Consensus 188 ~~~a~l~g~~~GRl~~YD~~tK~~~-VLld~L~F~NGlaLS~d~sfvl~ 235 (376)
T KOG1520|consen 188 FVFAALEGDPTGRLFRYDPSTKVTK-VLLDGLYFPNGLALSPDGSFVLV 235 (376)
T ss_pred eEEeeecCCCccceEEecCcccchh-hhhhcccccccccCCCCCCEEEE
Confidence 4555677778899999998775532 22222245578999999998763
No 471
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=91.07 E-value=6.7 Score=31.21 Aligned_cols=13 Identities=31% Similarity=0.764 Sum_probs=10.4
Q ss_pred EEEEEcCCCCcee
Q 024868 38 EIFSFDPKTTSVY 50 (261)
Q Consensus 38 ~i~~~~~~~~~~~ 50 (261)
.++.||+.+..+.
T Consensus 86 ~v~~Yd~~~~~W~ 98 (346)
T TIGR03547 86 DVYRYDPKKNSWQ 98 (346)
T ss_pred cEEEEECCCCEEe
Confidence 5888999888763
No 472
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=90.89 E-value=10 Score=33.06 Aligned_cols=143 Identities=21% Similarity=0.145 Sum_probs=73.3
Q ss_pred CCCCeEEEEEeeCCcEEEEeccCC----eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC------CCc---
Q 024868 111 DAGPQKCLSFSVDGSRFAAGGVDG----HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST------DGS--- 177 (261)
Q Consensus 111 ~~~~v~~~~~s~~~~~l~~~~~d~----~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------d~~--- 177 (261)
....+..+.|+|+|+.++..+.++ .+++.+.. + ........+....|+|+++.++.... ++.
T Consensus 58 ~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 132 (620)
T COG1506 58 FGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHL 132 (620)
T ss_pred cCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ceeeeecccccceeCCCCCeEEEEecccccccCCceee
Confidence 345677889999999998876333 24444433 2 22233346788889999887776211 222
Q ss_pred ----EEEEEccCC-cEEE--EEe--------ecCCCceEEEEEecCCCcceEEEEEeeCCCc---EEEEEECCCCeEEee
Q 024868 178 ----ARIWKTEDG-VAWT--FLT--------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKA---LLAVYDISTWNKIGH 239 (261)
Q Consensus 178 ----i~iwd~~~~-~~~~--~~~--------~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~---~i~~~d~~~~~~~~~ 239 (261)
+.+|....+ +... .+. ......+....++++++..+.. ......+. ...++...++... .
T Consensus 133 ~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~ 210 (620)
T COG1506 133 FVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASI-RLDDDADPWVTNLYVLIEGNGELE-S 210 (620)
T ss_pred eecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEe-eeccccCCceEeeEEEecCCCceE-E
Confidence 334433333 1111 111 1112235555555555652211 11111122 2333333344443 4
Q ss_pred eeccCcCeeEEEEeeCCCEEe
Q 024868 240 KRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 240 ~~~~~~~v~~~~~s~dg~~la 260 (261)
.......+..+.|.++|+.++
T Consensus 211 ~~~~~~~~~~~~~~~~gk~~~ 231 (620)
T COG1506 211 LTPGEGSISKLAFDADGKSIA 231 (620)
T ss_pred EcCCCceeeeeeeCCCCCeeE
Confidence 455556688899999998654
No 473
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.85 E-value=8.3 Score=35.88 Aligned_cols=73 Identities=18% Similarity=0.377 Sum_probs=49.0
Q ss_pred CCCeEEEEEeeCCcEEEEeccCCeEEEEEccCc-----e---E--------------Eeecc-ccCCceeEEEEcCCCCE
Q 024868 112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-----R---I--------------ILDEP-KAHKSVLDMDFSLDSEF 168 (261)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-----~---~--------------~~~~~-~~~~~v~~~~~s~~~~~ 168 (261)
...|.++....+|+.+++| .||.++-.-.... + . +.+++ .+.++|..+.....-+.
T Consensus 178 g~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~I 256 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNI 256 (1311)
T ss_pred CceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccce
Confidence 3567888877788877777 6664432211110 0 0 11222 33458999999888889
Q ss_pred EEEecCCCcEEEEEccC
Q 024868 169 LATTSTDGSARIWKTED 185 (261)
Q Consensus 169 l~~~~~d~~i~iwd~~~ 185 (261)
+++-+..+.|++||+..
T Consensus 257 lY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 257 LYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeeccCceEEEEEccC
Confidence 99999999999999975
No 474
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.75 E-value=1.2 Score=22.21 Aligned_cols=29 Identities=28% Similarity=0.481 Sum_probs=19.6
Q ss_pred CCCCceEEEECCCCCeEEEEec-C--CcEEEE
Q 024868 62 SEGDPMTIAVNPSGDDFVCSTT-N--GGCKLF 90 (261)
Q Consensus 62 ~~~~v~~~~~~~~~~~l~~~~~-d--g~i~i~ 90 (261)
....-....|+|||+.|+..+. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3456778999999999886654 3 555554
No 475
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=90.51 E-value=6.8 Score=30.34 Aligned_cols=172 Identities=13% Similarity=0.193 Sum_probs=87.6
Q ss_pred CCceEEEEEcCCCCceecCCeEEeeecCC----CCCceEEEECCCC----CeEE-EEe-cCCcEEEEEEeCCccccceee
Q 024868 34 PSVLEIFSFDPKTTSVYTSPLVTYVFDES----EGDPMTIAVNPSG----DDFV-CST-TNGGCKLFEVYGGATDINLLA 103 (261)
Q Consensus 34 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~----~~l~-~~~-~dg~i~i~~~~~~~~~~~~~~ 103 (261)
...-++..||..+.++ .....++.+ ......+.+.... +.+| .+. ..+-|.++|+.+++... .+.
T Consensus 31 ~~~pKLv~~Dl~t~~l----i~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~R-v~~ 105 (287)
T PF03022_consen 31 VCPPKLVAFDLKTNQL----IRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWR-VLH 105 (287)
T ss_dssp TS--EEEEEETTTTCE----EEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEE-EET
T ss_pred CCCcEEEEEECCCCcE----EEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEE-Eec
Confidence 3445899999988876 223334332 3456677775521 1333 322 23579999998876421 111
Q ss_pred eeCC-------------CCCCCCCeEEEEEee---CCcEEEEeccCCeEEEEEccC-----ceEE--------eeccccC
Q 024868 104 KKMP-------------PLQDAGPQKCLSFSV---DGSRFAAGGVDGHLRIMHWPS-----LRII--------LDEPKAH 154 (261)
Q Consensus 104 ~~~~-------------~~~~~~~v~~~~~s~---~~~~l~~~~~d~~i~~~d~~~-----~~~~--------~~~~~~~ 154 (261)
.... .+.....+..++.+| +++.|....-.+ -++|.+.+ .... ....+..
T Consensus 106 ~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k 184 (287)
T PF03022_consen 106 NSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDK 184 (287)
T ss_dssp CGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE-
T ss_pred CCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceecccc
Confidence 1111 111123467777766 666776664333 12333321 1100 0111121
Q ss_pred -CceeEEEEcCCCCEEEEecCCCcEEEEEccCC---cEEEEEe-ecC-CCceEEEEEec--CCCc
Q 024868 155 -KSVLDMDFSLDSEFLATTSTDGSARIWKTEDG---VAWTFLT-RNS-DEKIELCRFSK--DGTK 211 (261)
Q Consensus 155 -~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~-~~~-~~~v~~~~~~p--~~~~ 211 (261)
.....++.+++|.++++--..+.|..|+..+. +....+. ... -..+.++.+.+ +|..
T Consensus 185 ~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L 249 (287)
T PF03022_consen 185 GSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYL 249 (287)
T ss_dssp --SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-E
T ss_pred CCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceE
Confidence 35677889999999999888999999998751 1222222 222 23577888888 6654
No 476
>PLN02193 nitrile-specifier protein
Probab=89.92 E-value=11 Score=31.67 Aligned_cols=163 Identities=10% Similarity=0.067 Sum_probs=72.7
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-----CcEEEEEEe
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-----GGCKLFEVY 93 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~~ 93 (261)
..+++.|+...... ...-.++.||+.+..+...+.. ...+. ..........-+++.++.|+.+ ..+..||+.
T Consensus 176 ~~iyv~GG~~~~~~-~~~~~v~~yD~~~~~W~~~~~~-g~~P~-~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~ 252 (470)
T PLN02193 176 NKIYSFGGEFTPNQ-PIDKHLYVFDLETRTWSISPAT-GDVPH-LSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTT 252 (470)
T ss_pred CEEEEECCcCCCCC-CeeCcEEEEECCCCEEEeCCCC-CCCCC-CcccceEEEEECCEEEEECCCCCCCCCccEEEEECC
Confidence 34566666432110 0112588999988776321100 00110 0011111112245566666654 357777776
Q ss_pred CCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC-----eEEEEEccCceEEeeccc--c-C-CceeEEEEcC
Q 024868 94 GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-----HLRIMHWPSLRIILDEPK--A-H-KSVLDMDFSL 164 (261)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~--~-~-~~v~~~~~s~ 164 (261)
+..- ..+.. ....+. .+.......-++++++.|+.++ .+..||+.+.+-...... . . ..-..++. -
T Consensus 253 t~~W--~~l~~-~~~~P~-~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~ 327 (470)
T PLN02193 253 TNEW--KLLTP-VEEGPT-PRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-V 327 (470)
T ss_pred CCEE--EEcCc-CCCCCC-CccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-E
Confidence 5432 11111 000011 1111112223567777777543 467788776543211100 0 0 01112222 2
Q ss_pred CCCEEEEecCC----CcEEEEEccCCcEE
Q 024868 165 DSEFLATTSTD----GSARIWKTEDGVAW 189 (261)
Q Consensus 165 ~~~~l~~~~~d----~~i~iwd~~~~~~~ 189 (261)
++++++.++.+ ..+.+||+.+.+..
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~ 356 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWT 356 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEEE
Confidence 56777777655 45899999877653
No 477
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=89.70 E-value=14 Score=32.77 Aligned_cols=91 Identities=16% Similarity=0.120 Sum_probs=49.4
Q ss_pred eEEEEcCCCCEEEEecCCC-----cEEEEEcc---CCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEE
Q 024868 158 LDMDFSLDSEFLATTSTDG-----SARIWKTE---DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY 229 (261)
Q Consensus 158 ~~~~~s~~~~~l~~~~~d~-----~i~iwd~~---~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~ 229 (261)
..++|-|.|..+++-..|| .|.++.-+ -|+.-... ..+..+...+|+-.... ......+.+++|
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~--~~dEk~~~~~wn~~s~v------lav~~~n~~~lw 321 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRV--GCDEKAFLENWNLLSTV------LAVAEGNLLKLW 321 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccC--CchhhhhhhhhhHHHHH------HHHhhcceEEEE
Confidence 4589999999999876554 24444422 12221111 12223566777766554 334455679999
Q ss_pred ECCCCeEEeeeeccCcCeeEEEEeeCC
Q 024868 230 DISTWNKIGHKRLLRKPASVLSISLDG 256 (261)
Q Consensus 230 d~~~~~~~~~~~~~~~~v~~~~~s~dg 256 (261)
-..+..-.......-..+.-+.|+|..
T Consensus 322 ttkNyhWYLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 322 TTKNYHWYLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred EccceEEEEEEeecCCCcceeeecccc
Confidence 877644321122222345556677643
No 478
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.64 E-value=4.9 Score=28.37 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=23.1
Q ss_pred ceEEEEEecCCCcce-EEEEEeeCCCcEEEEEECCC
Q 024868 199 KIELCRFSKDGTKPF-LFCTVQRGDKALLAVYDIST 233 (261)
Q Consensus 199 ~v~~~~~~p~~~~~~-~~~~~~~~~d~~i~~~d~~~ 233 (261)
.+..++|||.|--.. --.++.-..++.|.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 588999999652100 01145667788999998763
No 479
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.62 E-value=8.2 Score=29.95 Aligned_cols=182 Identities=15% Similarity=0.100 Sum_probs=95.6
Q ss_pred CCceEEEECCCCC------------eEEEEecCCcEEEEEEeCCccc--cceeeeeCCCCCCCCCeEEEEEeeC--CcEE
Q 024868 64 GDPMTIAVNPSGD------------DFVCSTTNGGCKLFEVYGGATD--INLLAKKMPPLQDAGPQKCLSFSVD--GSRF 127 (261)
Q Consensus 64 ~~v~~~~~~~~~~------------~l~~~~~dg~i~i~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l 127 (261)
...+.+.|+.... .++.+++||+|.-|.-.-.... ...+ .........-...+++.+. +.+|
T Consensus 77 ~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~--~~d~s~~gavYkGLAi~~~~~~~~L 154 (336)
T TIGR03118 77 GTPTGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEI--VVDASQQGNVYKGLAVGPTGGGDYL 154 (336)
T ss_pred CCccEEEEeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEE--EEccCCCcceeeeeEEeecCCCceE
Confidence 3577777764332 2566788999999985333210 0000 0000011122356666653 4566
Q ss_pred EEec-cCCeEEEEEccCceEEe--ec-----cccCCc--eeE------EE---EcCCCCEEEEecCCCcEEEEEccCCcE
Q 024868 128 AAGG-VDGHLRIMHWPSLRIIL--DE-----PKAHKS--VLD------MD---FSLDSEFLATTSTDGSARIWKTEDGVA 188 (261)
Q Consensus 128 ~~~~-~d~~i~~~d~~~~~~~~--~~-----~~~~~~--v~~------~~---~s~~~~~l~~~~~d~~i~iwd~~~~~~ 188 (261)
..+. ..++|.++|-.=.+... .+ .....+ |.. +. -.++++.=+.+..-|.|-+||+. |+.
T Consensus 155 YaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l 233 (336)
T TIGR03118 155 YAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQL 233 (336)
T ss_pred EEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcE
Confidence 6554 67889999843221110 00 000001 111 11 11222222223334689999974 787
Q ss_pred EEEEeec--CCCceEEEEEec------CCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccC------cCeeEEEEee
Q 024868 189 WTFLTRN--SDEKIELCRFSK------DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR------KPASVLSISL 254 (261)
Q Consensus 189 ~~~~~~~--~~~~v~~~~~~p------~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~------~~v~~~~~s~ 254 (261)
++++... .+ ..+.++..| .|.. ++..-.||+|..||..+++.+..+.... ..++.++|-.
T Consensus 234 ~~r~as~g~LN-aPWG~a~APa~FG~~sg~l-----LVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 234 LRRVASSGRLN-APWGLAIAPESFGSLSGAL-----LVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred EEEeccCCccc-CCceeeeChhhhCCCCCCe-----EEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 7777432 12 356677655 3454 4666679999999999888776555432 3456677654
No 480
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=89.60 E-value=10 Score=31.09 Aligned_cols=147 Identities=14% Similarity=0.114 Sum_probs=80.8
Q ss_pred CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-----CCcEEEEeccCCeEEEEEccCc--e-
Q 024868 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-----DGSRFAAGGVDGHLRIMHWPSL--R- 145 (261)
Q Consensus 74 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~d~~i~~~d~~~~--~- 145 (261)
+...+++|+..|.++||+..........+ .-...-..+|..+..-+ +...||+- .-+.+.+|.+... .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~l---llE~~l~~PILqv~~G~F~s~~~~~~LaVL-hP~kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDL---LLETQLKDPILQVECGKFVSGSEDLQLAVL-HPRKLSVYSVSLVDGTV 111 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccE---EEEEecCCcEEEEEeccccCCCCcceEEEe-cCCEEEEEEEEecCCCc
Confidence 34689999999999999986544211100 11111245777776543 22345553 6677888877321 1
Q ss_pred ------EEeeccccC--CceeEEEEcC----C-CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcc
Q 024868 146 ------IILDEPKAH--KSVLDMDFSL----D-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP 212 (261)
Q Consensus 146 ------~~~~~~~~~--~~v~~~~~s~----~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 212 (261)
.+.....|+ .....++.-| . -.+++.-+.||.+.+|+-+.---...+.. ---...+.+.|.-..
T Consensus 112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~--~llPgPl~Y~~~tDs- 188 (418)
T PF14727_consen 112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD--FLLPGPLCYCPRTDS- 188 (418)
T ss_pred ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC--CCCCcCeEEeecCCE-
Confidence 122223333 2344455433 2 35788899999999999654332223322 112345667776665
Q ss_pred eEEEEEeeCCCcEEEEEEC
Q 024868 213 FLFCTVQRGDKALLAVYDI 231 (261)
Q Consensus 213 ~~~~~~~~~~d~~i~~~d~ 231 (261)
+++++.+..+.-|..
T Consensus 189 ----fvt~sss~~l~~Yky 203 (418)
T PF14727_consen 189 ----FVTASSSWTLECYKY 203 (418)
T ss_pred ----EEEecCceeEEEecH
Confidence 355555555666553
No 481
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.49 E-value=4.7 Score=26.98 Aligned_cols=115 Identities=12% Similarity=0.063 Sum_probs=66.9
Q ss_pred EEeeCCcEEEEeccCCeEEEEEccCceE-------EeeccccCCceeEEEEcC-----CCCEEEEecCCCcEEEEEccCC
Q 024868 119 SFSVDGSRFAAGGVDGHLRIMHWPSLRI-------ILDEPKAHKSVLDMDFSL-----DSEFLATTSTDGSARIWKTEDG 186 (261)
Q Consensus 119 ~~s~~~~~l~~~~~d~~i~~~d~~~~~~-------~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~d~~i~iwd~~~~ 186 (261)
+|......|++++.-|+|.+++...... ...+..-...|++++-.+ +...|+.|+ ...+..||+.+.
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccC
Confidence 4544455677787888899987653321 113334445677765433 234566665 567999999876
Q ss_pred cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEe
Q 024868 187 VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG 238 (261)
Q Consensus 187 ~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~ 238 (261)
.-+..-..+ + .++++.+-.-+...-- ++..+.+..|.-||.+..+...
T Consensus 84 ~d~Fyke~~-D-Gvn~i~~g~~~~~~~~--l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 84 SDLFYKEVP-D-GVNAIVIGKLGDIPSP--LVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred chhhhhhCc-c-ceeEEEEEecCCCCCc--EEEECceEEEEEeCCCCcEEEE
Confidence 654433322 2 3777776432221000 3455566789989987655543
No 482
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.42 E-value=4 Score=33.41 Aligned_cols=113 Identities=12% Similarity=0.086 Sum_probs=63.6
Q ss_pred CCCCeEEEEecCCcEEEE-EEeCCccccceeeeeCCCCCC-CCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeec
Q 024868 73 PSGDDFVCSTTNGGCKLF-EVYGGATDINLLAKKMPPLQD-AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE 150 (261)
Q Consensus 73 ~~~~~l~~~~~dg~i~i~-~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 150 (261)
..|..+.+.+.||-+.-| |......+.-.. ...+.- ..++..+.-..+.+-+++-...|++.++.....+.. ..
T Consensus 278 ~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h---~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l-L~ 353 (733)
T COG4590 278 SGGFSLLVVHEDGLVSQWFDVRRDGQPHLNH---IRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL-LF 353 (733)
T ss_pred hCceeEEEEcCCCceeeeeeeecCCCCccee---eeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce-eh
Confidence 346667888899988877 555443211100 000000 122222222223345666677888877764433332 22
Q ss_pred cccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEE
Q 024868 151 PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT 190 (261)
Q Consensus 151 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~ 190 (261)
......+.-+++||.+.++++- +.|.++++.+++..+.-
T Consensus 354 ~~~~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Pei 392 (733)
T COG4590 354 ERAYQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRNPEI 392 (733)
T ss_pred hhhhcCcceeeeCcccchheee-cCCceEEEEecCCCCCc
Confidence 2333467789999999988875 35779999888765543
No 483
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.41 E-value=6.7 Score=28.66 Aligned_cols=50 Identities=12% Similarity=0.142 Sum_probs=34.2
Q ss_pred cEEEEeccCCeEEEEEccCce-EEeeccccCCceeEEEEcCCCCEEEEecC
Q 024868 125 SRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMDFSLDSEFLATTST 174 (261)
Q Consensus 125 ~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 174 (261)
..|+.+.....|.+|++.+.+ ........-+.|..+.++..|++|++--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEe
Confidence 344444567789999998322 22223333478999999999999998644
No 484
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=89.28 E-value=1.3 Score=21.00 Aligned_cols=25 Identities=20% Similarity=0.124 Sum_probs=20.4
Q ss_pred EEEEecCCCcEEEEEccCCcEEEEE
Q 024868 168 FLATTSTDGSARIWKTEDGVAWTFL 192 (261)
Q Consensus 168 ~l~~~~~d~~i~iwd~~~~~~~~~~ 192 (261)
.++.++.++.+..+|.++|+.+..+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5777888999999999999876543
No 485
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=89.04 E-value=1.4 Score=27.22 Aligned_cols=43 Identities=19% Similarity=0.098 Sum_probs=28.6
Q ss_pred EeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 218 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
..+..+|.+.-||..+++....+... ...+.+++++|+++|++
T Consensus 31 le~~~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv 73 (89)
T PF03088_consen 31 LEGRPTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLV 73 (89)
T ss_dssp HHT---EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEE
T ss_pred ecCCCCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEE
Confidence 34566789999999998764333333 45689999999998763
No 486
>PLN02193 nitrile-specifier protein
Probab=88.71 E-value=13 Score=31.13 Aligned_cols=159 Identities=13% Similarity=0.031 Sum_probs=73.5
Q ss_pred eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC-----cEEEEEEeC
Q 024868 20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG-----GCKLFEVYG 94 (261)
Q Consensus 20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~~~~~ 94 (261)
.+.+.||.++. ...-.++.||+.+..+....... ..+ ....-.++.. -+++.++.|+.++ .+..||+.+
T Consensus 230 ~lYvfGG~~~~---~~~ndv~~yD~~t~~W~~l~~~~-~~P-~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t 303 (470)
T PLN02193 230 TLYVFGGRDAS---RQYNGFYSFDTTTNEWKLLTPVE-EGP-TPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVD 303 (470)
T ss_pred EEEEECCCCCC---CCCccEEEEECCCCEEEEcCcCC-CCC-CCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCC
Confidence 45666665432 11225888999887763211000 000 1111112222 2455666666543 356677665
Q ss_pred CccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC----CeEEEEEccCceEEeeccc---cCC-ceeEEEEcCCC
Q 024868 95 GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----GHLRIMHWPSLRIILDEPK---AHK-SVLDMDFSLDS 166 (261)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~---~~~-~v~~~~~s~~~ 166 (261)
..- ............... ..+ ..-+++.++.++.+ ..+.+||+.+.+-...... ... ...++ ..-++
T Consensus 304 ~~W--~~~~~~~~~~~~R~~-~~~-~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~ 378 (470)
T PLN02193 304 KKW--FHCSTPGDSFSIRGG-AGL-EVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGK 378 (470)
T ss_pred CEE--EeCCCCCCCCCCCCC-cEE-EEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECC
Confidence 432 111000000001111 111 22367777777654 4588999877653221111 111 11222 22356
Q ss_pred CEEEEecCC--------------CcEEEEEccCCcEE
Q 024868 167 EFLATTSTD--------------GSARIWKTEDGVAW 189 (261)
Q Consensus 167 ~~l~~~~~d--------------~~i~iwd~~~~~~~ 189 (261)
++++.|+.+ +.+.+||+.+.+-.
T Consensus 379 ~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 379 HIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred EEEEECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence 777777753 24788888876543
No 487
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=88.06 E-value=11 Score=29.22 Aligned_cols=197 Identities=11% Similarity=-0.033 Sum_probs=0.0
Q ss_pred CeEEeeecCCC-CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec
Q 024868 53 PLVTYVFDESE-GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131 (261)
Q Consensus 53 ~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 131 (261)
+.....+-+|- ..+..+....+-.++..|-.---+-+|+......... .......+-+..+.++ +++...+.
T Consensus 31 ~~v~~~~vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l-----~~~i~~~~l~~Dv~vs--e~yvyvad 103 (370)
T COG5276 31 VHVGYAYVGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVL-----LSVINARDLFADVRVS--EEYVYVAD 103 (370)
T ss_pred cccceEEeeeccCCcccccccccccccccCceEeeccccCcccccCcce-----EEEEehhhhhheeEec--ccEEEEEc
Q ss_pred cCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868 132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (261)
Q Consensus 132 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 211 (261)
.+.-+++.|+.+.......-.-.-.-..-.|.-.|++.+.+..|.-..+.|+.+.+.....-......--.-...-.|++
T Consensus 104 ~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~ISGn~ 183 (370)
T COG5276 104 WSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAISGNY 183 (370)
T ss_pred CCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEecCe
Q ss_pred ceEEEEEeeCCCcEEEEEECCCCe--EEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 212 PFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 212 ~~~~~~~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
...+..|+-+.+-|+.... .+......+..+.++..+++--++++
T Consensus 184 -----AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vv 230 (370)
T COG5276 184 -----AYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVV 230 (370)
T ss_pred -----EEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEE
No 488
>PRK13613 lipoprotein LpqB; Provisional
Probab=87.98 E-value=17 Score=31.53 Aligned_cols=142 Identities=16% Similarity=0.120 Sum_probs=0.0
Q ss_pred CeEEEEEeeCCcEEEEeccCC-eEEEEEccCceE----EeeccccCCceeEEEEcCCCCEEEEecC----CCcEEEEEcc
Q 024868 114 PQKCLSFSVDGSRFAAGGVDG-HLRIMHWPSLRI----ILDEPKAHKSVLDMDFSLDSEFLATTST----DGSARIWKTE 184 (261)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~~d~-~i~~~d~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d~~i~iwd~~ 184 (261)
.+.+++.++++..++....++ .+++..+..+.. ......... +...+|.++| .+-+... ...+++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~-Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~- 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGR-LTSPSWDGRG-DLWVVDRDPADPRLLWLLQG- 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCc-ccCCcCcCCC-CEEEecCCCCCceEEEEEcC-
Q ss_pred CCcEEEEEeecCCC-ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE-------EeeeeccCcCeeEEEEeeCC
Q 024868 185 DGVAWTFLTRNSDE-KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK-------IGHKRLLRKPASVLSISLDG 256 (261)
Q Consensus 185 ~~~~~~~~~~~~~~-~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~-------~~~~~~~~~~v~~~~~s~dg 256 (261)
+++....-..-..+ .|..+..|+||....+ ++.....++|++--+..... ...+...-..+.+++|..++
T Consensus 441 ~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAv--v~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~ 518 (599)
T PRK13613 441 DGEPVEVRTPELDGHRVVAVRVARDGVRVAL--IVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGDS 518 (599)
T ss_pred CCcEEEeeccccCCCEeEEEEECCCccEEEE--EEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCCC
Q ss_pred CEEe
Q 024868 257 KYLA 260 (261)
Q Consensus 257 ~~la 260 (261)
..++
T Consensus 519 sL~V 522 (599)
T PRK13613 519 QLVV 522 (599)
T ss_pred EEEE
No 489
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=87.84 E-value=3.3 Score=37.01 Aligned_cols=84 Identities=13% Similarity=0.205 Sum_probs=50.7
Q ss_pred eEEEEec-CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEE-eccCC-----eEEEEEccCce-EEe
Q 024868 77 DFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDG-----HLRIMHWPSLR-IIL 148 (261)
Q Consensus 77 ~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~-----~i~~~d~~~~~-~~~ 148 (261)
+||.-.. .+.|.+-|....... ...+....++.+.+|||||+.|+. .+.++ .|++-++.+.. ...
T Consensus 320 kiAfv~~~~~~L~~~D~dG~n~~-------~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~v 392 (912)
T TIGR02171 320 KLAFRNDVTGNLAYIDYTKGASR-------AVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLV 392 (912)
T ss_pred eEEEEEcCCCeEEEEecCCCCce-------EEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCce
Confidence 3444332 357888888765531 111345678899999999999998 44333 48888887543 223
Q ss_pred eccccCCceeEEEEcCCCC
Q 024868 149 DEPKAHKSVLDMDFSLDSE 167 (261)
Q Consensus 149 ~~~~~~~~v~~~~~s~~~~ 167 (261)
++......|..-...++|.
T Consensus 393 kl~ve~aaiprwrv~e~gd 411 (912)
T TIGR02171 393 KLPVENAAIPRWRVLENGD 411 (912)
T ss_pred EeecccccccceEecCCCC
Confidence 3333344565555566555
No 490
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=87.79 E-value=9.1 Score=32.54 Aligned_cols=57 Identities=23% Similarity=0.348 Sum_probs=34.3
Q ss_pred eeEEEEcCCCCEEEEecCCCcE----------EEE-------------EccCCcEEEEEeecCCCceEEEEEecCCCcce
Q 024868 157 VLDMDFSLDSEFLATTSTDGSA----------RIW-------------KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213 (261)
Q Consensus 157 v~~~~~s~~~~~l~~~~~d~~i----------~iw-------------d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 213 (261)
.-.|.|+|+|++++.-..++.- .+| +..+++..+.+....+..++.++|+||++.+|
T Consensus 438 PDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~fspDg~tlF 517 (524)
T PF05787_consen 438 PDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITGPCFSPDGRTLF 517 (524)
T ss_pred CCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccccceECCCCCEEE
Confidence 4568899999876653322211 112 22234444444455566799999999999843
No 491
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=87.29 E-value=10 Score=33.38 Aligned_cols=68 Identities=21% Similarity=0.356 Sum_probs=43.5
Q ss_pred CCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEE
Q 024868 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH 140 (261)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 140 (261)
...++++.-+|.|+.++.+..||.+++|+........ + -....+-..+.|...| ++++..|+.+.-|.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk-i-------~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK-I-------CEEAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhh-h-------hhhcCCccceeeeccc--eEEEeccchhheee
Confidence 3456778888999999999999999999997654311 1 1111223345555444 45555666666665
No 492
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=87.13 E-value=12 Score=28.71 Aligned_cols=171 Identities=17% Similarity=0.124 Sum_probs=95.9
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC---------CcEEEEEEeCCccccceeeeeCCC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---------GGCKLFEVYGGATDINLLAKKMPP 108 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~i~~~~~~~~~~~~~~~~~~~ 108 (261)
-|..+|+++..+..-++ ..+..........|.+.|+..+++... +.+++|+...
T Consensus 125 aI~R~dpkt~evt~f~l---p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq-------------- 187 (353)
T COG4257 125 AIGRLDPKTLEVTRFPL---PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ-------------- 187 (353)
T ss_pred eeEEecCcccceEEeec---ccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC--------------
Confidence 45556665554321111 122234567788999999988876421 3344444432
Q ss_pred CCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEe-ecccc-CCceeEEEEcCCCCEEEEecCCCcEEEEEccCC
Q 024868 109 LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL-DEPKA-HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG 186 (261)
Q Consensus 109 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~ 186 (261)
....+.++..|||..-++.-.+..|-..|..++.... ..... +..-+.+.-+|.|+.-++....+.+.-||-.+.
T Consensus 188 ---G~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~ 264 (353)
T COG4257 188 ---GGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT 264 (353)
T ss_pred ---CCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccc
Confidence 2234678889999887776677777777766653211 11111 234566666788888888777788888887654
Q ss_pred cEEEEEee-cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868 187 VAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (261)
Q Consensus 187 ~~~~~~~~-~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~ 234 (261)
.-+ ++.. .......++.....++. -++--..|.|.-+|-++.
T Consensus 265 sW~-eypLPgs~arpys~rVD~~grV-----W~sea~agai~rfdpeta 307 (353)
T COG4257 265 SWI-EYPLPGSKARPYSMRVDRHGRV-----WLSEADAGAIGRFDPETA 307 (353)
T ss_pred cce-eeeCCCCCCCcceeeeccCCcE-----EeeccccCceeecCcccc
Confidence 422 2221 11223455555555553 122233345666665543
No 493
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=87.03 E-value=16 Score=30.09 Aligned_cols=154 Identities=10% Similarity=0.077 Sum_probs=86.6
Q ss_pred CCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC-----CCCeEEEEecCCcEEEE
Q 024868 16 PENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-----SGDDFVCSTTNGGCKLF 90 (261)
Q Consensus 16 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~ 90 (261)
+.+...|++|+..| .+..|+|......... ...-..-..+|..++.-+ +...||+ -.-..+.+|
T Consensus 34 ~~~~d~IivGS~~G--------~LrIy~P~~~~~~~~~--lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY 102 (418)
T PF14727_consen 34 PSGSDKIIVGSYSG--------ILRIYDPSGNEFQPED--LLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVY 102 (418)
T ss_pred CCCccEEEEecccc--------EEEEEccCCCCCCCcc--EEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEE
Confidence 34567899999999 8999999665542221 111222346788777642 3334555 456679999
Q ss_pred EEeCCccc------cceeeeeCCCCCCCCCeEEEEEee----C-CcEEEEeccCCeEEEEEccCceEEeeccccCCceeE
Q 024868 91 EVYGGATD------INLLAKKMPPLQDAGPQKCLSFSV----D-GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLD 159 (261)
Q Consensus 91 ~~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~s~----~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~ 159 (261)
.+...... .++.......+ ......+..-| . -.+|.+-+.||.+.+|+-+.-.-...+. ..--...
T Consensus 103 ~v~~~~g~~~~g~~~~L~~~yeh~l--~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp-~~llPgP 179 (418)
T PF14727_consen 103 SVSLVDGTVEHGNQYQLELIYEHSL--QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP-DFLLPGP 179 (418)
T ss_pred EEEecCCCcccCcEEEEEEEEEEec--ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC-CCCCCcC
Confidence 88433221 11111111111 22334455544 2 2477888899999999865443222222 2222344
Q ss_pred EEEcCCCCEEEEecCCCcEEEEEc
Q 024868 160 MDFSLDSEFLATTSTDGSARIWKT 183 (261)
Q Consensus 160 ~~~s~~~~~l~~~~~d~~i~iwd~ 183 (261)
+.+.|.-..+++++.+..+.-|..
T Consensus 180 l~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 180 LCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred eEEeecCCEEEEecCceeEEEecH
Confidence 677777777777776666666654
No 494
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.70 E-value=10 Score=27.74 Aligned_cols=42 Identities=10% Similarity=0.113 Sum_probs=29.3
Q ss_pred EEEEecCCCcEEEEEccC--CcEEEEEeecCCCceEEEEEecCCCc
Q 024868 168 FLATTSTDGSARIWKTED--GVAWTFLTRNSDEKIELCRFSKDGTK 211 (261)
Q Consensus 168 ~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~ 211 (261)
.|..+...+.|.+|++.+ .+...++.. -+.|..+.++..|.+
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~T--v~~V~~l~y~~~GDY 73 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFST--VGRVLQLVYSEAGDY 73 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcc--hhheeEEEeccccce
Confidence 343335567899999983 344555553 346999999999998
No 495
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=86.37 E-value=17 Score=29.76 Aligned_cols=134 Identities=11% Similarity=0.057 Sum_probs=76.2
Q ss_pred eEEEEEeeCCcEEEEeccCCeEE-EEEccCceEE--eeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcE---
Q 024868 115 QKCLSFSVDGSRFAAGGVDGHLR-IMHWPSLRII--LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA--- 188 (261)
Q Consensus 115 v~~~~~s~~~~~l~~~~~d~~i~-~~d~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~--- 188 (261)
...+..++|+.+++++ ..|.+. -|| .+... .........+..+.|.+++..++++ .+|.+. +....++.
T Consensus 241 f~~v~~~~dG~~~~vg-~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSPDGDYVAVS-SRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEED 315 (398)
T ss_pred eeeEEEcCCCCEEEEE-CCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccc
Confidence 4456677888888877 445433 344 33321 1122233468999999999988776 445433 34444431
Q ss_pred --EEEEeec-CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee---eccCcCeeEEEEeeCCCEEe
Q 024868 189 --WTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---RLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 189 --~~~~~~~-~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~v~~~~~s~dg~~la 260 (261)
....... ....+.++.|.+++.. ...+..|.+..-. ..|+.-... .......+.+.|.++++..+
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~------~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~ 386 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEA------WAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFV 386 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcE------EEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEE
Confidence 2222211 1224888999988874 5666777665553 344432221 22345778999888776554
No 496
>PRK13614 lipoprotein LpqB; Provisional
Probab=86.07 E-value=21 Score=30.71 Aligned_cols=143 Identities=10% Similarity=0.000 Sum_probs=0.0
Q ss_pred CeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCC--cEEEEEccCCcE---
Q 024868 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG--SARIWKTEDGVA--- 188 (261)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~iwd~~~~~~--- 188 (261)
.+.+++.++++..++....++ -.+|-...++.......... +...+|.++| .+-+...+. .|....-.....
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~-~~l~~~~~g~~~~~~~~g~~-Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~~~ 420 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSR-TTLYTVSPGQPARALTSGST-LTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEGAQ 420 (573)
T ss_pred cccceeecCCCceEEEecCCC-cEEEEecCCCcceeeecCCC-ccCCcccCCC-CEEEeeCCCCceEEEEecCCCccccc
Q ss_pred ----EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC---CCeEEeeeeccC----cCeeEEEEeeCCC
Q 024868 189 ----WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS---TWNKIGHKRLLR----KPASVLSISLDGK 257 (261)
Q Consensus 189 ----~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~---~~~~~~~~~~~~----~~v~~~~~s~dg~ 257 (261)
........+..|..+..|+||-. +.+++......+|++--+. .|++........ ..+.+++|..++.
T Consensus 421 ~~~~~v~~~~l~g~~I~~lrvSrDG~R--~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~s 498 (573)
T PRK13614 421 APTVTLTADWLAGRTVKELRVSREGVR--ALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDST 498 (573)
T ss_pred ccceeecccccCCCeeEEEEECCCccE--EEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCE
Q ss_pred EEeC
Q 024868 258 YLAM 261 (261)
Q Consensus 258 ~la~ 261 (261)
.++.
T Consensus 499 l~V~ 502 (573)
T PRK13614 499 VVVT 502 (573)
T ss_pred EEEE
No 497
>PLN02153 epithiospecifier protein
Probab=85.95 E-value=16 Score=29.08 Aligned_cols=28 Identities=14% Similarity=0.358 Sum_probs=16.8
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCce
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSV 49 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 49 (261)
..+++.||.++.. ..-.++.||+.+..+
T Consensus 86 ~~iyv~GG~~~~~---~~~~v~~yd~~t~~W 113 (341)
T PLN02153 86 TKLYIFGGRDEKR---EFSDFYSYDTVKNEW 113 (341)
T ss_pred CEEEEECCCCCCC---ccCcEEEEECCCCEE
Confidence 3466677654321 122578889888766
No 498
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=85.70 E-value=6.4 Score=24.31 Aligned_cols=38 Identities=11% Similarity=-0.062 Sum_probs=25.1
Q ss_pred cCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcc
Q 024868 173 STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP 212 (261)
Q Consensus 173 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 212 (261)
..+|.+.-||..+++....+.+- . -.+.+++++|++.+
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L-~-fpNGVals~d~~~v 71 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGL-Y-FPNGVALSPDESFV 71 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEE-S-SEEEEEE-TTSSEE
T ss_pred CCCcCEEEEECCCCeEEEehhCC-C-ccCeEEEcCCCCEE
Confidence 34678889999888764444432 3 37899999999973
No 499
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=85.54 E-value=17 Score=29.22 Aligned_cols=192 Identities=15% Similarity=0.006 Sum_probs=90.4
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEE
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC 117 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 117 (261)
+++.+|+++....... .+......+..-.+..+|+ ++.++.++.++.+|..++.......... . ..+..
T Consensus 79 ~i~A~d~~~g~~~W~~----~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-----~-~~~~~ 147 (370)
T COG1520 79 NIFALNPDTGLVKWSY----PLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-----S-PYYAS 147 (370)
T ss_pred cEEEEeCCCCcEEecc----cCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC-----C-eEEec
Confidence 7888888877631110 0110011122222222666 6677788888888886665433221111 0 01111
Q ss_pred EEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC---CceeEEEEcCCCCEEEEecC--CCcEEEEEccCCcEEEEE
Q 024868 118 LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH---KSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTFL 192 (261)
Q Consensus 118 ~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~ 192 (261)
...-.++ .+...+.++.+.-.+..+++......... ..+..-....++ .++.+.. ++.+.-.|..+|+.....
T Consensus 148 ~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 148 PPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred CcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeeee
Confidence 1222233 33333367888888888787765533221 111111112233 3444444 566777788788776664
Q ss_pred eecCCCceE---EEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868 193 TRNSDEKIE---LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (261)
Q Consensus 193 ~~~~~~~v~---~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~ 242 (261)
.......-. .......+....--.+..++.++.+...|..+++.+-.+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 226 KVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred eeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 322111000 01011111110000023455667788888888887765554
No 500
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=85.36 E-value=21 Score=30.02 Aligned_cols=116 Identities=12% Similarity=0.007 Sum_probs=61.1
Q ss_pred EEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCC---ceeEEEEcCCCCEEEEecC-------------CCcEEEE
Q 024868 118 LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK---SVLDMDFSLDSEFLATTST-------------DGSARIW 181 (261)
Q Consensus 118 ~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~-------------d~~i~iw 181 (261)
+...++|.+++... ..+..+|+. |+.+....-..+ .=..+..-|+|++|+.+.. ...|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 55667888776654 778888864 554333222121 1356778899998887761 1246666
Q ss_pred EccCCcEEEEEee--cC----C--------------------CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868 182 KTEDGVAWTFLTR--NS----D--------------------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (261)
Q Consensus 182 d~~~~~~~~~~~~--~~----~--------------------~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~ 235 (261)
| .+|+.+..+.. +. . ..+.++.+.+....+ ++++.....|...|.++++
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~i----ivSsR~~s~V~~Id~~t~~ 304 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSI----IVSSRHQSAVIKIDYRTGK 304 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEE----EEEETTT-EEEEEE-TTS-
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeE----EEEcCcceEEEEEECCCCc
Confidence 7 67776665431 00 0 137889999944442 5666666689999988887
Q ss_pred EEeeee
Q 024868 236 KIGHKR 241 (261)
Q Consensus 236 ~~~~~~ 241 (261)
....+.
T Consensus 305 i~Wilg 310 (477)
T PF05935_consen 305 IKWILG 310 (477)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 664443
Done!