Query 024868
Match_columns 261
No_of_seqs 495 out of 1561
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 15:48:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024868.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024868hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 2.7E-40 9.3E-45 256.2 28.7 228 4-261 80-307 (321)
2 3ow8_A WD repeat-containing pr 100.0 3.2E-40 1.1E-44 255.9 27.4 234 3-261 31-265 (321)
3 4gqb_B Methylosome protein 50; 100.0 4.9E-40 1.7E-44 256.8 27.6 229 4-259 82-314 (344)
4 2ynn_A Coatomer subunit beta'; 100.0 9.5E-40 3.2E-44 251.4 28.6 229 4-261 13-245 (304)
5 1vyh_C Platelet-activating fac 100.0 8.5E-40 2.9E-44 261.6 28.8 228 4-261 108-355 (410)
6 1vyh_C Platelet-activating fac 100.0 2.9E-39 9.9E-44 258.6 26.8 228 4-261 150-397 (410)
7 2ynn_A Coatomer subunit beta'; 100.0 1.9E-38 6.3E-43 244.2 28.9 225 4-257 55-283 (304)
8 1got_B GT-beta; complex (GTP-b 100.0 4.1E-38 1.4E-42 246.0 30.5 231 4-261 55-287 (340)
9 1got_B GT-beta; complex (GTP-b 100.0 3.6E-38 1.2E-42 246.3 29.0 232 4-261 97-329 (340)
10 4ery_A WD repeat-containing pr 100.0 2.2E-37 7.5E-42 239.1 30.6 234 4-261 23-296 (312)
11 2pbi_B Guanine nucleotide-bind 100.0 7.9E-38 2.7E-42 245.6 27.5 235 4-261 106-343 (354)
12 3frx_A Guanine nucleotide-bind 100.0 1.2E-37 4E-42 241.3 28.1 233 3-261 16-254 (319)
13 1erj_A Transcriptional repress 100.0 3.8E-37 1.3E-41 245.0 28.3 225 6-261 125-375 (393)
14 2pbi_B Guanine nucleotide-bind 100.0 7.2E-37 2.5E-41 240.2 29.0 235 3-261 63-301 (354)
15 4g56_B MGC81050 protein; prote 100.0 1E-37 3.4E-42 245.2 23.6 231 4-261 94-329 (357)
16 3dwl_C Actin-related protein 2 100.0 6.1E-39 2.1E-43 253.9 15.7 232 4-261 11-268 (377)
17 4h5i_A Guanine nucleotide-exch 100.0 5.6E-37 1.9E-41 241.6 26.6 240 4-261 14-329 (365)
18 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.5E-37 2.2E-41 239.7 26.8 232 5-261 17-269 (345)
19 3iz6_a 40S ribosomal protein R 100.0 1.7E-37 5.8E-42 246.0 23.8 236 3-261 65-315 (380)
20 3frx_A Guanine nucleotide-bind 100.0 2.3E-36 7.9E-41 234.1 29.3 225 4-261 65-303 (319)
21 2pm7_B Protein transport prote 100.0 8.3E-37 2.8E-41 234.3 26.2 233 3-261 8-271 (297)
22 4gqb_B Methylosome protein 50; 100.0 6.9E-37 2.4E-41 239.0 25.6 242 4-260 30-274 (344)
23 1nr0_A Actin interacting prote 100.0 1.9E-36 6.4E-41 253.7 29.6 236 4-261 147-508 (611)
24 2hes_X YDR267CP; beta-propelle 100.0 3.2E-36 1.1E-40 234.4 28.4 232 3-257 13-263 (330)
25 1nr0_A Actin interacting prote 100.0 2.4E-36 8.2E-41 253.1 29.2 230 3-261 58-341 (611)
26 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.2E-36 1.4E-40 235.1 28.6 233 4-260 61-320 (345)
27 1k8k_C P40, ARP2/3 complex 41 100.0 4.2E-36 1.4E-40 236.9 28.6 233 3-261 7-261 (372)
28 2hes_X YDR267CP; beta-propelle 100.0 4.5E-36 1.5E-40 233.5 26.9 239 3-261 57-314 (330)
29 4g56_B MGC81050 protein; prote 100.0 6.5E-37 2.2E-41 240.6 22.2 242 4-260 42-286 (357)
30 2xzm_R RACK1; ribosome, transl 100.0 1.5E-35 5E-40 231.8 28.3 234 4-260 21-271 (343)
31 2xzm_R RACK1; ribosome, transl 100.0 9.6E-36 3.3E-40 232.9 27.1 227 4-261 76-326 (343)
32 2ymu_A WD-40 repeat protein; u 100.0 7.4E-36 2.5E-40 248.5 27.9 223 4-261 344-566 (577)
33 3bg1_A Protein SEC13 homolog; 100.0 2.1E-36 7E-41 234.0 22.0 233 3-261 12-279 (316)
34 1erj_A Transcriptional repress 100.0 3.2E-35 1.1E-39 233.9 27.8 227 3-261 63-327 (393)
35 3iz6_a 40S ribosomal protein R 100.0 4.7E-36 1.6E-40 237.7 21.6 240 4-261 108-361 (380)
36 4aow_A Guanine nucleotide-bind 100.0 1.9E-34 6.5E-39 224.8 30.2 239 4-261 38-323 (340)
37 2j04_B YDR362CP, TAU91; beta p 100.0 6.7E-36 2.3E-40 244.6 22.2 248 4-261 133-414 (524)
38 3zwl_B Eukaryotic translation 100.0 2.9E-34 9.8E-39 225.9 30.4 235 3-261 31-332 (369)
39 3mmy_A MRNA export factor; mRN 100.0 3.7E-35 1.3E-39 230.9 24.5 234 3-261 38-332 (368)
40 3k26_A Polycomb protein EED; W 100.0 1.8E-35 6E-40 232.7 22.3 233 3-261 68-352 (366)
41 1gxr_A ESG1, transducin-like e 100.0 4E-34 1.4E-38 222.5 29.7 233 3-261 50-282 (337)
42 3dm0_A Maltose-binding peripla 100.0 1.5E-34 5.2E-39 245.6 28.5 233 3-260 381-618 (694)
43 3dm0_A Maltose-binding peripla 100.0 2.1E-34 7.2E-39 244.7 28.5 229 4-261 430-679 (694)
44 1sq9_A Antiviral protein SKI8; 100.0 2.6E-34 9E-39 228.7 27.0 239 3-261 15-308 (397)
45 3jrp_A Fusion protein of prote 100.0 2.3E-34 7.7E-39 227.4 26.4 233 3-261 10-273 (379)
46 1sq9_A Antiviral protein SKI8; 100.0 7.7E-34 2.6E-38 226.0 29.4 238 3-256 61-366 (397)
47 2pm9_A Protein WEB1, protein t 100.0 1E-34 3.5E-39 232.3 24.2 240 3-261 66-323 (416)
48 4e54_B DNA damage-binding prot 100.0 2.3E-35 7.8E-40 237.8 20.2 230 4-259 119-359 (435)
49 1r5m_A SIR4-interacting protei 100.0 2.7E-34 9.2E-39 230.1 26.2 233 4-261 108-411 (425)
50 3dw8_B Serine/threonine-protei 100.0 1.5E-34 5.3E-39 233.4 24.9 241 3-261 27-359 (447)
51 1gxr_A ESG1, transducin-like e 100.0 2E-33 7E-38 218.5 29.8 228 3-261 96-323 (337)
52 2ymu_A WD-40 repeat protein; u 100.0 4.4E-34 1.5E-38 237.8 27.6 223 4-261 303-525 (577)
53 2aq5_A Coronin-1A; WD40 repeat 100.0 1.6E-34 5.6E-39 230.5 23.9 239 3-260 80-329 (402)
54 3mkq_A Coatomer beta'-subunit; 100.0 3.2E-34 1.1E-38 247.5 27.1 229 4-261 13-245 (814)
55 3vl1_A 26S proteasome regulato 100.0 4.8E-34 1.6E-38 228.8 25.5 226 6-261 99-351 (420)
56 2xyi_A Probable histone-bindin 100.0 3.6E-34 1.2E-38 230.5 23.8 242 4-260 128-395 (430)
57 4ery_A WD repeat-containing pr 100.0 1.5E-33 5E-38 217.6 26.2 195 54-261 14-209 (312)
58 3f3f_A Nucleoporin SEH1; struc 100.0 1.4E-33 4.6E-38 220.1 26.2 240 3-261 10-323 (351)
59 2aq5_A Coronin-1A; WD40 repeat 100.0 6.1E-34 2.1E-38 227.2 24.6 236 8-260 38-283 (402)
60 1r5m_A SIR4-interacting protei 100.0 2.1E-33 7.3E-38 224.9 26.8 233 4-261 45-347 (425)
61 4aez_A CDC20, WD repeat-contai 100.0 2.8E-33 9.5E-38 223.4 27.1 227 3-261 133-366 (401)
62 3ei3_B DNA damage-binding prot 100.0 2.6E-33 8.9E-38 222.1 26.3 229 3-261 117-369 (383)
63 3ei3_B DNA damage-binding prot 100.0 2.9E-33 1E-37 221.8 26.2 213 4-243 73-292 (383)
64 4gga_A P55CDC, cell division c 100.0 6.9E-33 2.4E-37 222.4 27.7 235 5-261 106-381 (420)
65 3vl1_A 26S proteasome regulato 100.0 9.3E-33 3.2E-37 221.3 28.3 232 3-257 138-398 (420)
66 3i2n_A WD repeat-containing pr 100.0 9.9E-34 3.4E-38 222.1 22.1 235 4-260 65-337 (357)
67 2pm9_A Protein WEB1, protein t 100.0 5.4E-34 1.9E-38 228.1 20.7 242 3-261 112-400 (416)
68 3odt_A Protein DOA1; ubiquitin 100.0 3.9E-32 1.3E-36 209.3 30.1 230 3-260 17-282 (313)
69 4h5i_A Guanine nucleotide-exch 100.0 7E-33 2.4E-37 218.3 25.7 201 6-234 135-344 (365)
70 1k8k_C P40, ARP2/3 complex 41 100.0 1.9E-32 6.7E-37 215.9 28.2 234 3-261 51-347 (372)
71 1yfq_A Cell cycle arrest prote 100.0 1.2E-32 4.2E-37 214.8 26.6 223 3-261 55-309 (342)
72 3gre_A Serine/threonine-protei 100.0 7.4E-34 2.5E-38 229.0 20.3 236 4-260 63-344 (437)
73 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.7E-33 1.6E-37 225.2 25.0 190 61-261 100-324 (450)
74 3mkq_A Coatomer beta'-subunit; 100.0 2.2E-32 7.4E-37 236.0 28.6 226 3-257 54-283 (814)
75 3dw8_B Serine/threonine-protei 100.0 2.4E-33 8E-38 226.5 21.1 240 5-261 94-433 (447)
76 3k26_A Polycomb protein EED; W 100.0 1.1E-33 3.8E-38 222.4 18.6 236 3-261 17-304 (366)
77 2j04_B YDR362CP, TAU91; beta p 100.0 1.8E-33 6.3E-38 230.2 20.3 208 4-232 207-427 (524)
78 3sfz_A APAF-1, apoptotic pepti 100.0 2.5E-32 8.6E-37 245.1 29.1 230 3-261 614-899 (1249)
79 4ggc_A P55CDC, cell division c 100.0 6.2E-32 2.1E-36 208.7 27.5 233 7-261 28-301 (318)
80 3jro_A Fusion protein of prote 100.0 5.3E-33 1.8E-37 237.8 23.4 233 3-261 8-271 (753)
81 4aez_A CDC20, WD repeat-contai 100.0 6.9E-32 2.4E-36 215.3 28.4 221 7-261 96-320 (401)
82 4a11_B DNA excision repair pro 100.0 1.7E-32 5.9E-37 218.6 24.7 235 3-261 42-351 (408)
83 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.4E-32 2.5E-36 218.2 28.6 232 5-260 103-370 (450)
84 1yfq_A Cell cycle arrest prote 100.0 1.1E-32 3.8E-37 215.0 22.3 228 3-261 10-268 (342)
85 2oaj_A Protein SNI1; WD40 repe 100.0 1.2E-32 4.1E-37 238.9 24.6 218 4-254 17-281 (902)
86 4gq1_A NUP37; propeller, trans 100.0 2.2E-33 7.4E-38 223.4 18.4 223 19-261 101-376 (393)
87 3i2n_A WD repeat-containing pr 100.0 9.9E-33 3.4E-37 216.4 21.4 230 3-260 17-276 (357)
88 2pm7_B Protein transport prote 100.0 4E-32 1.4E-36 208.3 23.4 193 58-261 4-224 (297)
89 4e54_B DNA damage-binding prot 100.0 1.7E-32 5.7E-37 221.1 21.4 237 3-261 163-417 (435)
90 1pgu_A Actin interacting prote 100.0 8.3E-32 2.8E-36 225.5 26.1 237 3-261 17-269 (615)
91 3bg1_A Protein SEC13 homolog; 100.0 5.8E-32 2E-36 209.1 22.7 206 4-232 57-292 (316)
92 2j04_A TAU60, YPL007P, hypothe 100.0 5.9E-32 2E-36 217.9 22.3 236 3-261 14-284 (588)
93 3v7d_B Cell division control p 100.0 1.1E-30 3.8E-35 212.0 29.5 230 3-261 161-408 (464)
94 3v7d_B Cell division control p 100.0 1.6E-30 5.3E-35 211.1 28.6 218 6-260 124-366 (464)
95 3gre_A Serine/threonine-protei 100.0 7.8E-32 2.7E-36 217.2 20.5 236 3-260 110-425 (437)
96 3lrv_A PRE-mRNA-splicing facto 100.0 3E-32 1E-36 213.0 16.8 218 19-261 48-277 (343)
97 4aow_A Guanine nucleotide-bind 100.0 1.9E-30 6.4E-35 202.2 26.5 201 56-261 31-232 (340)
98 3dwl_C Actin-related protein 2 100.0 2.9E-32 9.9E-37 215.6 15.6 192 59-261 7-222 (377)
99 3sfz_A APAF-1, apoptotic pepti 100.0 2.5E-32 8.6E-37 245.1 16.9 226 4-261 961-1195(1249)
100 2j04_A TAU60, YPL007P, hypothe 100.0 1.2E-30 4.1E-35 210.3 23.1 225 4-261 85-347 (588)
101 3zwl_B Eukaryotic translation 100.0 2.8E-30 9.6E-35 203.1 24.1 197 52-261 21-235 (369)
102 2xyi_A Probable histone-bindin 100.0 1.6E-30 5.5E-35 209.2 22.2 250 4-260 45-338 (430)
103 3vu4_A KMHSV2; beta-propeller 100.0 2E-30 6.9E-35 203.5 22.0 226 3-261 18-322 (355)
104 4gga_A P55CDC, cell division c 100.0 7.1E-30 2.4E-34 204.9 25.6 230 4-254 147-416 (420)
105 3jrp_A Fusion protein of prote 100.0 6.3E-30 2.2E-34 201.9 24.2 195 56-261 4-226 (379)
106 3f3f_A Nucleoporin SEH1; struc 100.0 1.7E-29 5.7E-34 196.9 26.2 223 3-240 56-344 (351)
107 1pgu_A Actin interacting prote 100.0 1.5E-29 5.2E-34 211.7 27.1 230 4-260 63-313 (615)
108 3lrv_A PRE-mRNA-splicing facto 100.0 1.1E-30 3.7E-35 204.2 18.9 205 5-235 77-294 (343)
109 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7E-29 2.4E-33 200.5 28.4 219 4-261 199-424 (445)
110 1p22_A F-BOX/WD-repeat protein 100.0 4.1E-29 1.4E-33 201.3 26.5 215 4-260 133-350 (435)
111 1l0q_A Surface layer protein; 100.0 1.2E-28 4.2E-33 195.7 27.9 223 4-260 31-259 (391)
112 1p22_A F-BOX/WD-repeat protein 100.0 4.4E-29 1.5E-33 201.2 25.0 219 3-260 172-399 (435)
113 2w18_A PALB2, fancn, partner a 100.0 5.4E-29 1.9E-33 189.3 23.2 210 4-231 111-355 (356)
114 3bws_A Protein LP49; two-domai 100.0 3.6E-28 1.2E-32 195.5 28.0 229 4-261 169-417 (433)
115 2oaj_A Protein SNI1; WD40 repe 100.0 1.8E-29 6.2E-34 219.1 21.6 188 58-261 12-228 (902)
116 3odt_A Protein DOA1; ubiquitin 100.0 1.2E-28 4.3E-33 189.6 23.3 198 3-238 103-301 (313)
117 4a11_B DNA excision repair pro 100.0 8.8E-29 3E-33 197.2 22.7 200 56-261 36-262 (408)
118 4ggc_A P55CDC, cell division c 100.0 5.8E-28 2E-32 186.4 25.8 211 4-235 67-317 (318)
119 1l0q_A Surface layer protein; 100.0 9.3E-28 3.2E-32 190.6 27.6 212 19-261 2-216 (391)
120 2w18_A PALB2, fancn, partner a 100.0 1E-27 3.6E-32 182.3 25.5 182 65-261 113-343 (356)
121 3bws_A Protein LP49; two-domai 100.0 3.7E-28 1.3E-32 195.4 23.9 230 5-261 123-361 (433)
122 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.1E-27 7.1E-32 191.9 28.3 216 3-260 158-376 (445)
123 3jro_A Fusion protein of prote 100.0 1.4E-28 5E-33 210.4 22.6 194 57-261 3-224 (753)
124 3mmy_A MRNA export factor; mRN 100.0 2.2E-27 7.6E-32 186.5 22.6 199 56-261 32-290 (368)
125 4gq1_A NUP37; propeller, trans 100.0 1.7E-27 5.9E-32 189.4 20.6 208 4-232 136-388 (393)
126 3vu4_A KMHSV2; beta-propeller 100.0 2.9E-27 9.9E-32 185.6 20.0 187 58-261 14-257 (355)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 2E-26 6.9E-31 184.4 25.1 221 4-257 178-410 (415)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 2.8E-26 9.6E-31 183.5 23.3 199 38-261 160-370 (415)
129 2ojh_A Uncharacterized protein 100.0 4.5E-26 1.5E-30 173.7 22.0 227 4-261 41-288 (297)
130 2ecf_A Dipeptidyl peptidase IV 99.9 2.3E-25 8E-30 190.6 22.4 234 4-260 36-352 (741)
131 3vgz_A Uncharacterized protein 99.9 4.8E-24 1.6E-28 166.8 26.9 223 6-260 90-329 (353)
132 2oit_A Nucleoporin 214KDA; NH2 99.9 2.6E-25 8.8E-30 178.7 17.8 189 64-260 37-256 (434)
133 1ri6_A Putative isomerase YBHE 99.9 1E-23 3.5E-28 164.2 24.7 232 4-261 37-293 (343)
134 3u4y_A Uncharacterized protein 99.9 8E-24 2.7E-28 164.3 24.0 226 5-260 41-288 (331)
135 1xfd_A DIP, dipeptidyl aminope 99.9 1.6E-25 5.4E-30 191.1 15.3 231 5-260 17-321 (723)
136 2ojh_A Uncharacterized protein 99.9 2.2E-24 7.7E-29 164.3 20.1 203 38-261 23-233 (297)
137 2z3z_A Dipeptidyl aminopeptida 99.9 4.7E-24 1.6E-28 181.6 21.1 230 5-260 82-371 (706)
138 3hfq_A Uncharacterized protein 99.9 2E-22 6.9E-27 157.5 27.6 237 6-261 41-302 (347)
139 3vgz_A Uncharacterized protein 99.9 2.4E-22 8.1E-27 157.2 27.8 239 5-260 41-287 (353)
140 3u4y_A Uncharacterized protein 99.9 1.5E-22 5E-27 157.2 26.3 216 18-260 9-236 (331)
141 2oit_A Nucleoporin 214KDA; NH2 99.9 3.5E-24 1.2E-28 172.1 17.4 168 62-234 91-279 (434)
142 2ecf_A Dipeptidyl peptidase IV 99.9 7.1E-24 2.4E-28 181.4 18.5 228 5-260 109-395 (741)
143 1k32_A Tricorn protease; prote 99.9 2.5E-23 8.4E-28 184.0 21.6 219 6-261 246-488 (1045)
144 1ri6_A Putative isomerase YBHE 99.9 2E-22 6.7E-27 156.9 24.3 218 19-260 5-246 (343)
145 1pby_B Quinohemoprotein amine 99.9 4.5E-22 1.5E-26 154.5 23.9 214 20-260 2-295 (337)
146 1nir_A Nitrite reductase; hemo 99.9 2.5E-22 8.6E-27 165.5 23.5 197 19-242 149-364 (543)
147 1xfd_A DIP, dipeptidyl aminope 99.9 2.6E-23 9E-28 177.4 18.2 243 6-260 62-375 (723)
148 3scy_A Hypothetical bacterial 99.9 1.1E-20 3.8E-25 148.4 30.6 239 7-261 52-322 (361)
149 2z3z_A Dipeptidyl aminopeptida 99.9 7.8E-23 2.7E-27 174.1 19.5 228 4-261 120-417 (706)
150 1nir_A Nitrite reductase; hemo 99.9 5E-22 1.7E-26 163.7 23.5 233 6-261 180-437 (543)
151 3hfq_A Uncharacterized protein 99.9 2.9E-21 9.8E-26 151.0 26.1 212 34-260 15-255 (347)
152 3o4h_A Acylamino-acid-releasin 99.9 1.5E-22 5E-27 168.8 19.6 219 4-260 21-261 (582)
153 1pby_B Quinohemoprotein amine 99.9 1.3E-21 4.5E-26 151.9 21.7 206 6-244 35-321 (337)
154 4a5s_A Dipeptidyl peptidase 4 99.9 2.8E-22 9.7E-27 171.4 19.2 227 5-260 17-334 (740)
155 1z68_A Fibroblast activation p 99.9 1E-23 3.5E-28 179.9 9.6 224 9-260 20-327 (719)
156 1jmx_B Amine dehydrogenase; ox 99.9 1.2E-21 4E-26 152.9 20.2 217 18-260 10-310 (349)
157 1k32_A Tricorn protease; prote 99.9 9.4E-22 3.2E-26 174.0 21.8 227 4-261 203-437 (1045)
158 1jmx_B Amine dehydrogenase; ox 99.9 1.7E-20 5.9E-25 146.3 23.7 205 6-243 44-335 (349)
159 3scy_A Hypothetical bacterial 99.9 7.9E-19 2.7E-23 137.9 31.9 183 65-253 156-360 (361)
160 3o4h_A Acylamino-acid-releasin 99.9 7.3E-21 2.5E-25 158.6 17.0 216 5-260 65-297 (582)
161 1jof_A Carboxy-CIS,CIS-muconat 99.9 2.5E-19 8.6E-24 141.0 24.1 210 36-260 15-270 (365)
162 3pe7_A Oligogalacturonate lyas 99.9 2.1E-20 7.3E-25 148.1 18.0 227 10-260 41-305 (388)
163 1jof_A Carboxy-CIS,CIS-muconat 99.9 7.8E-20 2.7E-24 143.9 19.6 191 65-261 84-326 (365)
164 1z68_A Fibroblast activation p 99.9 1.1E-20 3.8E-25 161.2 14.8 230 7-260 62-371 (719)
165 3fvz_A Peptidyl-glycine alpha- 99.8 5.8E-18 2E-22 131.3 27.0 241 5-260 24-307 (329)
166 3azo_A Aminopeptidase; POP fam 99.8 3.1E-19 1.1E-23 150.9 19.5 200 38-260 103-350 (662)
167 3pe7_A Oligogalacturonate lyas 99.8 1E-18 3.6E-23 138.3 20.3 227 7-261 83-367 (388)
168 3azo_A Aminopeptidase; POP fam 99.8 1.4E-18 4.9E-23 146.9 22.3 228 4-260 23-309 (662)
169 2oiz_A Aromatic amine dehydrog 99.8 4.5E-18 1.5E-22 133.5 23.5 202 38-257 32-360 (361)
170 4a5s_A Dipeptidyl peptidase 4 99.8 7.5E-19 2.6E-23 150.3 17.5 190 64-260 17-275 (740)
171 3e5z_A Putative gluconolactona 99.8 5.7E-17 1.9E-21 123.9 24.9 222 6-260 29-272 (296)
172 2dg1_A DRP35, lactonase; beta 99.8 1.9E-16 6.5E-21 122.9 27.6 226 6-260 46-295 (333)
173 1q7f_A NHL, brain tumor CG1071 99.8 2.6E-16 8.8E-21 119.5 26.8 224 6-260 31-266 (286)
174 3c5m_A Oligogalacturonate lyas 99.8 5.1E-18 1.7E-22 134.6 16.8 226 7-260 38-298 (396)
175 2xdw_A Prolyl endopeptidase; a 99.8 1.3E-16 4.5E-21 136.0 24.4 234 5-260 125-395 (710)
176 3no2_A Uncharacterized protein 99.8 4E-16 1.4E-20 117.8 23.6 210 19-260 5-228 (276)
177 3c5m_A Oligogalacturonate lyas 99.8 3.3E-18 1.1E-22 135.6 12.6 217 10-261 86-367 (396)
178 1rwi_B Serine/threonine-protei 99.8 6.6E-16 2.2E-20 116.2 23.3 224 6-260 25-249 (270)
179 3g4e_A Regucalcin; six bladed 99.7 5.4E-15 1.9E-19 112.9 24.7 224 9-260 17-257 (297)
180 2gop_A Trilobed protease; beta 99.7 8.2E-16 2.8E-20 119.9 20.1 187 38-260 44-277 (347)
181 1q7f_A NHL, brain tumor CG1071 99.7 7.5E-15 2.6E-19 111.4 24.8 199 6-234 78-281 (286)
182 2bkl_A Prolyl endopeptidase; m 99.7 4.2E-16 1.4E-20 132.5 19.5 233 5-260 121-378 (695)
183 3dsm_A Uncharacterized protein 99.7 3.8E-15 1.3E-19 115.4 22.6 213 19-258 54-280 (328)
184 1xip_A Nucleoporin NUP159; bet 99.7 5E-16 1.7E-20 121.5 16.1 177 65-261 39-230 (388)
185 2gop_A Trilobed protease; beta 99.7 6.2E-16 2.1E-20 120.6 16.6 209 6-254 60-311 (347)
186 2xdw_A Prolyl endopeptidase; a 99.7 1.8E-15 6.1E-20 129.0 19.5 186 62-260 123-351 (710)
187 2z2n_A Virginiamycin B lyase; 99.7 2.1E-13 7E-18 103.9 28.8 224 5-260 15-240 (299)
188 1qks_A Cytochrome CD1 nitrite 99.7 8.1E-14 2.8E-18 115.0 27.4 203 12-242 161-382 (567)
189 2bkl_A Prolyl endopeptidase; m 99.7 7.8E-15 2.7E-19 124.8 21.8 201 38-260 95-334 (695)
190 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 3.9E-14 1.3E-18 108.8 23.4 230 7-260 20-283 (314)
191 2dg1_A DRP35, lactonase; beta 99.7 3.9E-15 1.3E-19 115.5 17.9 190 58-260 39-248 (333)
192 3e5z_A Putative gluconolactona 99.7 7.9E-15 2.7E-19 111.9 18.5 186 58-260 22-233 (296)
193 2z2n_A Virginiamycin B lyase; 99.7 9.6E-13 3.3E-17 100.1 30.1 223 5-260 57-281 (299)
194 3fvz_A Peptidyl-glycine alpha- 99.7 2E-14 6.8E-19 111.4 20.8 207 6-233 92-322 (329)
195 1yr2_A Prolyl oligopeptidase; 99.7 1.4E-14 4.8E-19 124.0 21.7 231 6-260 164-422 (741)
196 3dsm_A Uncharacterized protein 99.7 2.7E-14 9.1E-19 110.6 21.2 206 38-260 18-240 (328)
197 2ghs_A AGR_C_1268P; regucalcin 99.7 1.6E-13 5.4E-18 106.2 24.4 221 8-260 52-287 (326)
198 1rwi_B Serine/threonine-protei 99.6 5E-14 1.7E-18 105.8 20.4 200 6-236 68-267 (270)
199 3hrp_A Uncharacterized protein 99.6 5.1E-13 1.7E-17 106.4 27.0 225 6-260 132-395 (409)
200 3dr2_A Exported gluconolactona 99.6 2.8E-13 9.5E-18 103.8 23.8 222 6-260 46-292 (305)
201 2qc5_A Streptogramin B lactona 99.6 5E-12 1.7E-16 96.2 29.7 224 5-260 20-245 (300)
202 2qc5_A Streptogramin B lactona 99.6 6.3E-12 2.1E-16 95.7 29.0 224 5-260 62-287 (300)
203 2oiz_A Aromatic amine dehydrog 99.6 3.2E-14 1.1E-18 111.6 15.5 109 74-191 14-146 (361)
204 1qks_A Cytochrome CD1 nitrite 99.6 1.6E-12 5.3E-17 107.4 25.6 234 6-260 198-455 (567)
205 2mad_H Methylamine dehydrogena 99.6 9.1E-12 3.1E-16 97.9 27.9 207 38-260 48-334 (373)
206 1xip_A Nucleoporin NUP159; bet 99.6 7.8E-14 2.7E-18 109.2 14.9 174 5-212 38-228 (388)
207 3no2_A Uncharacterized protein 99.6 2.8E-13 9.5E-18 102.2 16.2 170 74-260 4-180 (276)
208 2ece_A 462AA long hypothetical 99.6 5.6E-12 1.9E-16 99.3 23.8 225 18-261 95-397 (462)
209 3c75_H MADH, methylamine dehyd 99.5 7.2E-13 2.5E-17 105.1 18.8 203 38-255 100-423 (426)
210 1yr2_A Prolyl oligopeptidase; 99.5 1.3E-11 4.3E-16 105.9 23.6 214 8-236 212-444 (741)
211 2mad_H Methylamine dehydrogena 99.5 1.1E-10 3.7E-15 91.8 27.0 192 38-240 98-357 (373)
212 3iuj_A Prolyl endopeptidase; h 99.5 5.1E-12 1.7E-16 107.4 20.1 230 5-260 129-386 (693)
213 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 2.4E-11 8.2E-16 93.2 22.0 197 5-233 71-299 (314)
214 2qe8_A Uncharacterized protein 99.5 2.9E-11 9.8E-16 94.2 22.4 237 6-260 18-306 (343)
215 3iuj_A Prolyl endopeptidase; h 99.5 1.6E-12 5.5E-17 110.5 15.3 183 62-260 127-341 (693)
216 3sjl_D Methylamine dehydrogena 99.4 2E-11 6.8E-16 95.3 19.2 223 13-260 39-295 (386)
217 2ece_A 462AA long hypothetical 99.4 7.9E-11 2.7E-15 92.8 22.4 240 20-261 28-337 (462)
218 3g4e_A Regucalcin; six bladed 99.4 1E-10 3.5E-15 89.2 22.6 185 5-214 54-258 (297)
219 3hrp_A Uncharacterized protein 99.4 1.5E-11 5.2E-16 97.9 18.5 182 64-260 131-338 (409)
220 2hz6_A Endoplasmic reticulum t 99.4 2.2E-13 7.7E-18 107.1 7.3 204 19-257 9-216 (369)
221 2ghs_A AGR_C_1268P; regucalcin 99.4 2.8E-10 9.7E-15 87.9 23.0 177 65-260 50-245 (326)
222 1npe_A Nidogen, entactin; glyc 99.4 5.6E-09 1.9E-13 78.2 28.7 221 7-258 38-264 (267)
223 1fwx_A Nitrous oxide reductase 99.4 9.2E-12 3.1E-16 101.3 14.1 214 19-261 102-404 (595)
224 2iwa_A Glutamine cyclotransfer 99.4 1.2E-10 4.1E-15 86.3 18.8 179 66-260 23-221 (266)
225 3dr2_A Exported gluconolactona 99.3 2.4E-10 8.3E-15 87.4 18.5 185 59-260 40-254 (305)
226 1mda_H Methylamine dehydrogena 99.3 9.4E-11 3.2E-15 91.5 16.0 200 38-254 97-366 (368)
227 3sjl_D Methylamine dehydrogena 99.3 1.5E-09 5E-14 84.9 22.1 217 9-255 141-384 (386)
228 1yiq_A Quinohemoprotein alcoho 99.3 1.4E-09 4.7E-14 92.3 23.6 185 68-259 239-532 (689)
229 1kb0_A Quinohemoprotein alcoho 99.3 1.4E-09 4.8E-14 92.0 23.0 186 67-259 246-534 (677)
230 3nol_A Glutamine cyclotransfer 99.3 7.4E-10 2.5E-14 81.3 18.4 177 66-260 45-240 (262)
231 1mda_H Methylamine dehydrogena 99.3 2.6E-10 8.7E-15 89.1 15.5 209 38-260 47-329 (368)
232 2iwa_A Glutamine cyclotransfer 99.2 1.5E-08 5E-13 75.2 21.9 198 7-234 23-238 (266)
233 2qe8_A Uncharacterized protein 99.2 1.4E-09 4.6E-14 84.7 15.8 191 5-211 67-304 (343)
234 2p4o_A Hypothetical protein; p 99.2 6.8E-08 2.3E-12 73.8 24.1 219 7-260 34-273 (306)
235 3nok_A Glutaminyl cyclase; bet 99.2 5.8E-09 2E-13 76.6 16.9 176 66-260 57-250 (268)
236 3mbr_X Glutamine cyclotransfer 99.1 1.8E-08 6.3E-13 73.3 19.4 178 65-260 22-219 (243)
237 1fwx_A Nitrous oxide reductase 99.1 1.6E-09 5.5E-14 88.3 14.5 171 74-259 100-344 (595)
238 3hxj_A Pyrrolo-quinoline quino 99.1 7.4E-09 2.5E-13 79.8 17.8 202 21-260 109-310 (330)
239 3c75_H MADH, methylamine dehyd 99.1 1.8E-09 6.3E-14 85.7 12.9 133 122-260 82-243 (426)
240 3qqz_A Putative uncharacterize 99.1 5.5E-07 1.9E-11 66.4 24.8 205 5-232 27-252 (255)
241 1npe_A Nidogen, entactin; glyc 99.0 5.4E-07 1.9E-11 67.3 24.1 186 38-236 11-201 (267)
242 3q7m_A Lipoprotein YFGL, BAMB; 99.0 6.3E-08 2.2E-12 76.2 19.4 157 75-242 188-346 (376)
243 2hz6_A Endoplasmic reticulum t 99.0 1.1E-11 3.8E-16 97.4 -2.1 147 74-240 8-156 (369)
244 2xe4_A Oligopeptidase B; hydro 99.0 1.9E-08 6.6E-13 86.2 17.2 156 65-233 175-354 (751)
245 2fp8_A Strictosidine synthase; 99.0 2.3E-07 8E-12 71.4 20.6 191 59-260 14-244 (322)
246 3mbr_X Glutamine cyclotransfer 99.0 3.5E-07 1.2E-11 66.6 20.0 177 8-212 24-218 (243)
247 3nol_A Glutamine cyclotransfer 99.0 1.7E-07 5.7E-12 68.9 18.3 170 19-212 53-239 (262)
248 3nok_A Glutaminyl cyclase; bet 99.0 2E-07 6.7E-12 68.5 18.5 167 19-212 65-249 (268)
249 1yiq_A Quinohemoprotein alcoho 99.0 3.1E-07 1.1E-11 78.0 22.2 160 20-192 122-345 (689)
250 3v64_C Agrin; beta propeller, 98.9 4.2E-06 1.4E-10 65.1 26.5 216 7-252 75-294 (349)
251 1kb0_A Quinohemoprotein alcoho 98.9 2.7E-07 9.1E-12 78.2 20.9 158 20-193 129-354 (677)
252 1kv9_A Type II quinohemoprotei 98.9 5.6E-07 1.9E-11 76.2 22.6 183 68-257 234-513 (668)
253 3qqz_A Putative uncharacterize 98.9 1.8E-06 6E-11 63.7 22.2 192 57-260 20-239 (255)
254 3hxj_A Pyrrolo-quinoline quino 98.9 1.6E-08 5.5E-13 77.9 11.9 198 21-259 32-229 (330)
255 2fp8_A Strictosidine synthase; 98.9 1.9E-06 6.5E-11 66.2 22.8 222 8-258 22-296 (322)
256 3v64_C Agrin; beta propeller, 98.9 8.7E-06 3E-10 63.3 26.3 196 38-252 54-253 (349)
257 2xe4_A Oligopeptidase B; hydro 98.9 1.6E-06 5.4E-11 74.5 23.8 202 6-231 175-398 (751)
258 1flg_A Protein (quinoprotein e 98.9 9.3E-07 3.2E-11 73.5 21.5 166 85-258 291-542 (582)
259 3v65_B Low-density lipoprotein 98.9 3.9E-06 1.3E-10 66.2 24.1 217 6-252 117-337 (386)
260 2ad6_A Methanol dehydrogenase 98.9 2.3E-06 7.8E-11 71.1 23.6 185 68-260 239-522 (571)
261 3v65_B Low-density lipoprotein 98.8 7.8E-06 2.7E-10 64.5 24.2 196 38-252 97-296 (386)
262 1k3i_A Galactose oxidase precu 98.8 3.9E-06 1.4E-10 71.0 23.9 118 19-145 198-325 (656)
263 3tc9_A Hypothetical hydrolase; 98.8 1.6E-05 5.4E-10 63.7 25.8 154 7-185 139-301 (430)
264 3sov_A LRP-6, low-density lipo 98.8 1.1E-05 3.7E-10 61.9 23.4 206 6-240 36-245 (318)
265 1ijq_A LDL receptor, low-densi 98.8 2.3E-05 8E-10 60.0 25.7 208 7-240 32-245 (316)
266 1w6s_A Methanol dehydrogenase 98.8 3.1E-06 1.1E-10 70.4 21.4 183 68-258 245-529 (599)
267 2p4o_A Hypothetical protein; p 98.8 2.4E-06 8.2E-11 65.2 19.0 181 64-260 32-227 (306)
268 3q7m_A Lipoprotein YFGL, BAMB; 98.7 4.7E-06 1.6E-10 65.4 21.0 191 21-241 105-304 (376)
269 4hw6_A Hypothetical protein, I 98.7 2.3E-05 7.8E-10 62.8 25.0 223 7-260 141-418 (433)
270 3p5b_L Low density lipoprotein 98.7 4E-05 1.4E-09 60.7 26.1 223 5-252 112-339 (400)
271 3tc9_A Hypothetical hydrolase; 98.7 5.8E-07 2E-11 72.0 15.2 155 65-232 138-300 (430)
272 3amr_A 3-phytase; beta-propell 98.7 2.5E-05 8.6E-10 59.9 23.3 210 11-241 31-272 (355)
273 1kv9_A Type II quinohemoprotei 98.7 1.3E-05 4.4E-10 67.9 22.6 157 75-239 117-339 (668)
274 3p5b_L Low density lipoprotein 98.7 7.5E-05 2.6E-09 59.2 28.0 180 38-235 93-279 (400)
275 1ijq_A LDL receptor, low-densi 98.6 6.2E-05 2.1E-09 57.7 26.6 178 38-233 11-195 (316)
276 3sov_A LRP-6, low-density lipo 98.6 4.7E-05 1.6E-09 58.4 23.0 200 38-253 14-217 (318)
277 4a2l_A BT_4663, two-component 98.6 0.00012 4.1E-09 63.4 28.0 187 63-259 262-466 (795)
278 4a2l_A BT_4663, two-component 98.6 0.00015 5.1E-09 62.8 27.5 186 64-259 310-512 (795)
279 4hw6_A Hypothetical protein, I 98.6 6.2E-06 2.1E-10 66.1 17.0 156 65-232 140-303 (433)
280 1w6s_A Methanol dehydrogenase 98.5 4.3E-05 1.5E-09 63.7 21.0 165 69-241 111-350 (599)
281 3m0c_C LDL receptor, low-densi 98.5 0.00027 9.3E-09 60.8 26.1 165 63-235 423-591 (791)
282 3m0c_C LDL receptor, low-densi 98.5 0.00037 1.3E-08 60.0 26.6 210 7-241 426-640 (791)
283 1flg_A Protein (quinoprotein e 98.5 6E-05 2.1E-09 62.7 20.6 78 133-211 465-542 (582)
284 1n7d_A LDL receptor, low-densi 98.4 1.9E-06 6.4E-11 73.3 10.6 176 65-253 454-634 (699)
285 3amr_A 3-phytase; beta-propell 98.4 7.4E-05 2.5E-09 57.3 18.2 169 74-260 39-247 (355)
286 2p9w_A MAL S 1 allergenic prot 98.4 0.0001 3.4E-09 56.1 18.6 167 58-234 7-216 (334)
287 3kya_A Putative phosphatase; s 98.4 0.00054 1.9E-08 55.4 24.8 160 7-184 141-340 (496)
288 2ad6_A Methanol dehydrogenase 98.4 0.00012 4.1E-09 60.9 20.2 159 75-241 115-343 (571)
289 3sre_A PON1, serum paraoxonase 98.4 0.00037 1.3E-08 54.0 21.4 164 38-211 84-280 (355)
290 3v9f_A Two-component system se 98.3 0.0012 3.9E-08 57.2 25.2 212 38-259 184-421 (781)
291 3v9f_A Two-component system se 98.3 0.00098 3.3E-08 57.6 24.7 186 63-259 312-509 (781)
292 3sre_A PON1, serum paraoxonase 98.3 0.00075 2.6E-08 52.3 23.2 195 59-260 45-282 (355)
293 2xbg_A YCF48-like protein; pho 98.3 0.00072 2.5E-08 52.0 22.9 192 6-231 123-320 (327)
294 1n7d_A LDL receptor, low-densi 98.2 1.6E-05 5.4E-10 67.6 12.8 162 64-234 406-572 (699)
295 2ism_A Putative oxidoreductase 98.2 0.00028 9.7E-09 54.9 18.1 227 8-260 34-330 (352)
296 2p9w_A MAL S 1 allergenic prot 98.2 0.001 3.4E-08 50.7 20.9 209 9-236 17-268 (334)
297 4a0p_A LRP6, LRP-6, low-densit 98.2 0.002 6.8E-08 54.2 27.4 201 6-238 38-242 (628)
298 3a9g_A Putative uncharacterize 98.1 0.0016 5.4E-08 50.7 21.8 227 7-260 31-327 (354)
299 3s94_A LRP-6, low-density lipo 98.1 0.0011 3.8E-08 55.6 21.0 203 6-237 41-247 (619)
300 3s94_A LRP-6, low-density lipo 98.1 0.0027 9.4E-08 53.2 22.4 183 38-236 19-205 (619)
301 2xbg_A YCF48-like protein; pho 98.1 0.002 7E-08 49.5 27.6 226 4-260 35-265 (327)
302 3kya_A Putative phosphatase; s 98.0 0.00017 5.7E-09 58.4 14.1 158 65-231 140-339 (496)
303 3ii7_A Kelch-like protein 7; p 98.0 0.0027 9.2E-08 48.1 21.0 191 19-235 12-227 (306)
304 2vpj_A Kelch-like protein 12; 97.9 0.0034 1.2E-07 47.4 20.7 196 19-236 15-234 (301)
305 3pbp_A Nucleoporin NUP82; beta 97.9 0.0011 3.8E-08 52.1 16.0 150 72-230 29-209 (452)
306 4a0p_A LRP6, LRP-6, low-densit 97.9 0.0074 2.5E-07 50.7 27.5 198 38-254 16-217 (628)
307 1k3i_A Galactose oxidase precu 97.9 0.0049 1.7E-07 52.2 20.6 119 67-189 189-327 (656)
308 2g8s_A Glucose/sorbosone dehyd 97.9 0.0056 1.9E-07 47.6 22.1 56 200-260 273-338 (353)
309 3a9g_A Putative uncharacterize 97.8 0.0031 1.1E-07 49.0 16.6 140 113-260 29-213 (354)
310 3ii7_A Kelch-like protein 7; p 97.7 0.0079 2.7E-07 45.5 21.4 193 19-235 56-274 (306)
311 1zgk_A Kelch-like ECH-associat 97.7 0.0086 2.9E-07 45.4 19.7 192 19-235 25-242 (308)
312 3das_A Putative oxidoreductase 97.7 0.012 4E-07 45.5 22.3 231 7-260 34-323 (347)
313 3s25_A Hypothetical 7-bladed b 97.6 0.0061 2.1E-07 46.2 16.2 158 72-260 22-199 (302)
314 3pbp_A Nucleoporin NUP82; beta 97.6 0.014 4.7E-07 46.1 18.0 116 65-181 67-208 (452)
315 2ism_A Putative oxidoreductase 97.6 0.0021 7.2E-08 50.0 13.8 95 114-211 32-148 (352)
316 3s25_A Hypothetical 7-bladed b 97.6 0.012 4.2E-07 44.5 20.5 182 38-260 38-238 (302)
317 1tl2_A L10, protein (tachylect 97.5 0.0032 1.1E-07 44.9 12.2 139 65-211 42-195 (236)
318 3das_A Putative oxidoreductase 97.5 0.0073 2.5E-07 46.6 15.3 142 113-260 32-217 (347)
319 1cru_A Protein (soluble quinop 97.5 0.013 4.4E-07 47.2 17.2 99 113-211 27-157 (454)
320 1zgk_A Kelch-like ECH-associat 97.5 0.019 6.4E-07 43.5 18.5 178 38-235 91-289 (308)
321 2vpj_A Kelch-like protein 12; 97.5 0.019 6.4E-07 43.3 20.3 194 19-235 63-280 (301)
322 2xn4_A Kelch-like protein 2; s 97.5 0.019 6.5E-07 43.3 19.7 195 19-236 62-279 (302)
323 2g8s_A Glucose/sorbosone dehyd 97.4 0.018 6.3E-07 44.6 16.8 146 64-211 18-211 (353)
324 4asc_A Kelch repeat and BTB do 97.4 0.022 7.6E-07 43.2 22.3 188 19-235 5-223 (315)
325 4asc_A Kelch repeat and BTB do 97.4 0.025 8.7E-07 42.9 18.0 139 38-190 68-226 (315)
326 1tl2_A L10, protein (tachylect 97.4 0.0016 5.5E-08 46.5 8.9 137 113-260 41-197 (236)
327 2xn4_A Kelch-like protein 2; s 97.3 0.03 1E-06 42.2 22.9 193 19-235 16-231 (302)
328 1cru_A Protein (soluble quinop 97.3 0.049 1.7E-06 43.9 19.0 110 63-174 26-163 (454)
329 2woz_A Kelch repeat and BTB do 97.2 0.033 1.1E-06 42.4 15.6 138 38-189 79-235 (318)
330 2uvk_A YJHT; unknown function, 97.2 0.024 8.2E-07 43.9 15.0 111 123-239 200-348 (357)
331 2xzh_A Clathrin heavy chain 1; 97.0 0.036 1.2E-06 42.2 13.8 131 56-186 192-333 (365)
332 2zwa_A Leucine carboxyl methyl 97.0 0.13 4.4E-06 43.9 20.5 202 19-236 398-638 (695)
333 2woz_A Kelch repeat and BTB do 97.0 0.07 2.4E-06 40.5 22.7 187 20-235 17-233 (318)
334 1bpo_A Protein (clathrin); cla 96.9 0.11 3.9E-06 41.2 16.2 165 14-187 158-333 (494)
335 2be1_A Serine/threonine-protei 96.8 0.018 6.3E-07 44.2 11.0 195 19-238 10-236 (339)
336 2uvk_A YJHT; unknown function, 96.7 0.13 4.6E-06 39.6 18.2 49 134-183 168-224 (357)
337 3ei3_A DNA damage-binding prot 96.5 0.46 1.6E-05 43.1 21.0 176 38-233 808-999 (1158)
338 2xzh_A Clathrin heavy chain 1; 96.5 0.19 6.4E-06 38.4 25.0 193 38-247 88-304 (365)
339 2be1_A Serine/threonine-protei 96.3 0.014 4.8E-07 44.9 7.5 112 125-242 11-139 (339)
340 3sbq_A Nitrous-oxide reductase 96.2 0.035 1.2E-06 45.4 9.4 71 156-233 324-408 (638)
341 2zwa_A Leucine carboxyl methyl 96.1 0.38 1.3E-05 41.0 15.9 161 19-189 452-639 (695)
342 2wg3_C Hedgehog-interacting pr 96.0 0.24 8.3E-06 39.9 13.5 112 64-175 14-159 (463)
343 1bpo_A Protein (clathrin); cla 96.0 0.45 1.6E-05 37.9 25.3 193 38-247 87-303 (494)
344 3ott_A Two-component system se 96.0 0.7 2.4E-05 39.8 24.3 197 39-258 84-292 (758)
345 3sbq_A Nitrous-oxide reductase 95.3 0.99 3.4E-05 37.2 15.2 73 113-185 323-408 (638)
346 1xi4_A Clathrin heavy chain; a 95.2 0.88 3E-05 42.0 14.9 168 12-188 156-334 (1630)
347 1xi4_A Clathrin heavy chain; a 94.7 1.9 6.5E-05 39.9 15.5 163 64-237 106-293 (1630)
348 3ott_A Two-component system se 94.0 2.7 9.3E-05 36.1 27.2 175 64-259 63-246 (758)
349 3ei3_A DNA damage-binding prot 93.5 4.4 0.00015 36.9 25.9 184 63-260 553-752 (1158)
350 2wg3_C Hedgehog-interacting pr 93.1 2.9 9.9E-05 33.7 21.7 19 114-132 140-158 (463)
351 3zwu_A Alkaline phosphatase PH 91.8 0.7 2.4E-05 38.4 8.0 57 157-213 478-546 (592)
352 4gq2_M Nucleoporin NUP120; bet 91.0 8.3 0.00028 34.3 22.3 38 156-193 237-274 (950)
353 4a9v_A PHOX; hydrolase, beta-p 89.6 2.4 8.3E-05 35.1 9.0 59 156-214 477-547 (592)
354 3zwu_A Alkaline phosphatase PH 87.6 11 0.00039 31.4 13.8 59 114-172 477-548 (592)
355 4fhn_B Nucleoporin NUP120; pro 87.4 17 0.00058 33.1 17.5 37 157-193 240-276 (1139)
356 4a9v_A PHOX; hydrolase, beta-p 79.6 12 0.00042 31.1 8.7 61 113-173 476-549 (592)
357 4fhn_B Nucleoporin NUP120; pro 78.7 9.9 0.00034 34.6 8.8 36 114-149 239-274 (1139)
358 1sqj_A OXG-RCBH, oligoxylogluc 77.1 36 0.0012 29.6 19.2 156 3-175 13-190 (789)
359 3no0_A DNA gyrase subunit A; D 75.4 22 0.00076 26.3 18.3 119 63-184 67-195 (276)
360 3f7f_A Nucleoporin NUP120; nuc 73.8 7 0.00024 33.4 6.0 36 157-194 224-259 (729)
361 3uc1_A DNA gyrase subunit A; D 70.3 33 0.0011 26.1 22.3 157 19-184 109-278 (327)
362 4hvt_A Ritya.17583.B, post-pro 69.4 54 0.0018 28.1 14.8 118 116-233 132-278 (711)
363 3no0_A DNA gyrase subunit A; D 65.3 39 0.0013 25.0 20.3 115 19-142 80-195 (276)
364 3q6k_A 43.2 kDa salivary prote 63.8 51 0.0017 25.8 17.4 108 64-172 220-341 (381)
365 3uc1_A DNA gyrase subunit A; D 56.0 65 0.0022 24.5 19.9 119 64-184 95-227 (327)
366 1q47_A Semaphorin 3A; beta pro 55.1 53 0.0018 26.8 7.6 74 65-138 405-487 (495)
367 1suu_A DNA gyrase subunit A; t 54.2 67 0.0023 24.2 22.5 163 64-232 47-230 (312)
368 3qhy_B Beta-lactamase inhibito 53.7 64 0.0022 23.8 13.2 146 65-235 103-248 (282)
369 3f7f_A Nucleoporin NUP120; nuc 51.7 25 0.00084 30.2 5.3 29 121-149 228-256 (729)
370 3q6k_A 43.2 kDa salivary prote 50.4 89 0.003 24.4 20.8 172 35-211 121-337 (381)
371 4gz8_A Semaphorin-3A; multi-do 49.7 84 0.0029 26.8 8.2 62 77-138 431-495 (667)
372 3a0f_A Xyloglucanase; beta-pro 49.2 1.3E+02 0.0045 26.0 17.5 163 3-176 19-203 (763)
373 3al9_A Plexin-A2; beta-propell 49.1 60 0.0021 26.8 7.1 70 7-85 402-472 (539)
374 1q47_A Semaphorin 3A; beta pro 49.0 73 0.0025 25.9 7.5 67 114-180 405-487 (495)
375 4hvt_A Ritya.17583.B, post-pro 47.9 1.3E+02 0.0046 25.8 22.4 208 37-259 156-410 (711)
376 1wp5_A Topoisomerase IV; broke 45.8 96 0.0033 23.5 19.8 163 64-232 39-224 (323)
377 3al9_A Plexin-A2; beta-propell 45.3 81 0.0028 26.0 7.3 73 65-138 401-476 (539)
378 2cn3_A Xyloglucanase, beta-1,4 45.3 1.5E+02 0.0051 25.5 22.7 111 5-131 23-151 (737)
379 3mez_B Mannose-specific lectin 42.4 58 0.002 20.0 9.9 10 202-211 60-69 (113)
380 3nvq_A Semaphorin-7A; beta-pro 41.4 1E+02 0.0036 25.7 7.4 55 126-180 382-444 (590)
381 3b7f_A Glycosyl hydrolase, BNR 40.6 1.2E+02 0.0042 23.3 20.6 223 17-260 20-295 (394)
382 3nvq_A Semaphorin-7A; beta-pro 39.9 1.4E+02 0.0049 25.0 7.9 62 77-138 382-444 (590)
383 1sqj_A OXG-RCBH, oligoxylogluc 39.2 1.9E+02 0.0066 25.1 16.7 141 63-210 14-181 (789)
384 4gq2_M Nucleoporin NUP120; bet 36.9 2.3E+02 0.0079 25.3 26.4 37 113-149 236-272 (950)
385 4gz8_A Semaphorin-3A; multi-do 36.8 1.4E+02 0.0047 25.5 7.5 55 126-180 431-495 (667)
386 3a0c_A Mannose/sialic acid-bin 35.3 77 0.0026 19.4 9.8 10 249-258 86-95 (110)
387 1b2p_A Protein (lectin); manno 31.0 98 0.0033 19.3 9.5 9 249-257 96-104 (119)
388 1olz_A Semaphorin 4D; developm 30.7 2.4E+02 0.0083 24.0 8.1 71 65-138 398-477 (663)
389 3mez_A Mannose-specific lectin 30.2 97 0.0033 19.0 6.2 11 249-259 88-98 (111)
390 3mez_B Mannose-specific lectin 30.0 98 0.0034 19.0 10.8 59 124-184 24-83 (113)
391 1zi0_A DNA gyrase subunit A; b 27.7 1.9E+02 0.0066 21.6 20.1 83 59-142 142-225 (307)
392 1wp5_A Topoisomerase IV; broke 26.9 2.1E+02 0.007 21.7 20.9 79 64-142 144-224 (323)
393 3oky_B Putative uncharacterize 26.2 2.5E+02 0.0084 23.4 7.2 73 66-138 405-495 (565)
394 1zvu_A Topoisomerase IV subuni 25.4 3.3E+02 0.011 23.5 9.9 74 111-185 552-633 (716)
395 1olz_A Semaphorin 4D; developm 24.3 3.3E+02 0.011 23.2 8.3 67 114-180 398-477 (663)
396 3qhy_B Beta-lactamase inhibito 24.3 2.1E+02 0.0072 20.9 13.2 106 64-185 141-246 (282)
397 1suu_A DNA gyrase subunit A; t 24.1 2.3E+02 0.0078 21.2 20.5 80 63-142 150-230 (312)
398 3kci_A Probable E3 ubiquitin-p 23.7 2.5E+02 0.0086 21.6 17.4 114 66-184 55-186 (389)
399 3kvp_A Uncharacterized protein 21.8 70 0.0024 17.7 2.2 15 35-49 38-52 (72)
400 3dzw_A Agglutinin; lectin, man 21.2 1.5E+02 0.005 18.0 9.9 11 249-259 85-95 (109)
401 4h3o_A Lectin; cadmium, plant 21.0 1.5E+02 0.005 17.9 6.9 56 124-183 19-76 (105)
402 3oky_A Plexin-A2; transmembran 20.9 2.8E+02 0.0097 23.7 6.7 62 19-88 412-474 (681)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.7e-40 Score=256.23 Aligned_cols=228 Identities=18% Similarity=0.204 Sum_probs=203.0
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
..+|.+++|+++ ..++++|+.|+ .|..||..+... ...+..|...+.+++|+|++++|++++.
T Consensus 80 ~~~v~~~~~~~~---~~~l~s~s~D~--------~i~lWd~~~~~~------~~~~~~~~~~~~~~~~spdg~~l~~g~~ 142 (321)
T 3ow8_A 80 QLGVVSVDISHT---LPIAASSSLDA--------HIRLWDLENGKQ------IKSIDAGPVDAWTLAFSPDSQYLATGTH 142 (321)
T ss_dssp SSCEEEEEECSS---SSEEEEEETTS--------EEEEEETTTTEE------EEEEECCTTCCCCEEECTTSSEEEEECT
T ss_pred CCCEEEEEECCC---CCEEEEEeCCC--------cEEEEECCCCCE------EEEEeCCCccEEEEEECCCCCEEEEEcC
Confidence 467999999885 56899999999 999999887764 4567788889999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
++.+++|++.++..... ...+...+.+++|+|++++|++++.|+.|++||+++++.+..+..|..+|.+++|+
T Consensus 143 dg~v~i~~~~~~~~~~~-------~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s 215 (321)
T 3ow8_A 143 VGKVNIFGVESGKKEYS-------LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS 215 (321)
T ss_dssp TSEEEEEETTTCSEEEE-------EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEEC
T ss_pred CCcEEEEEcCCCceeEE-------ecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEc
Confidence 99999999987764221 12245679999999999999999999999999999999888888888899999999
Q ss_pred CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc
Q 024868 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL 243 (261)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~ 243 (261)
|++++|++++.|+.|++||+++++....+..|.. .|.+++|+|++++ +++++.|++|++||+++++.+..+..|
T Consensus 216 pd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~-----l~s~s~D~~v~iwd~~~~~~~~~~~~h 289 (321)
T 3ow8_A 216 PDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS-WVLNVAFCPDDTH-----FVSSSSDKSVKVWDVGTRTCVHTFFDH 289 (321)
T ss_dssp TTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSE-----EEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC-ceEEEEECCCCCE-----EEEEeCCCcEEEEeCCCCEEEEEEcCC
Confidence 9999999999999999999999999988887765 6999999999998 689999999999999999999888899
Q ss_pred CcCeeEEEEeeCCCEEeC
Q 024868 244 RKPASVLSISLDGKYLAM 261 (261)
Q Consensus 244 ~~~v~~~~~s~dg~~la~ 261 (261)
...|.+++|+|+|++|++
T Consensus 290 ~~~v~~v~~s~~g~~l~s 307 (321)
T 3ow8_A 290 QDQVWGVKYNGNGSKIVS 307 (321)
T ss_dssp SSCEEEEEECTTSSEEEE
T ss_pred CCcEEEEEECCCCCEEEE
Confidence 999999999999998874
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.2e-40 Score=255.86 Aligned_cols=234 Identities=17% Similarity=0.194 Sum_probs=197.8
Q ss_pred CCceeeEEEEEeeC-CcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE
Q 024868 3 GGGTVTCGSWIKRP-ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81 (261)
Q Consensus 3 ~~~~v~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 81 (261)
...+|++++|+|+. ....++++|+.|+ .+..|+...... .....+.+|...|.+++|+|++..++++
T Consensus 31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~--------~v~vW~~~~~~~----~~~~~l~gh~~~v~~~~~~~~~~~l~s~ 98 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKENSETVVTGSLDD--------LVKVWKWRDERL----DLQWSLEGHQLGVVSVDISHTLPIAASS 98 (321)
T ss_dssp SSSCEEEEEEC-------CEEEEEETTS--------CEEEEEEETTEE----EEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred CCCcEEEEEEecCCCCCCCEEEEEcCCC--------CEEEEECCCCCe----eeeeeeccCCCCEEEEEECCCCCEEEEE
Confidence 36899999998863 2356899999999 555555444332 2245688999999999999999999999
Q ss_pred ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEE
Q 024868 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (261)
Q Consensus 82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~ 161 (261)
+.|++|++||+.+++....+ ..+...+.+++|+|++++|++++.|+.+++|++++++....+..+...+.+++
T Consensus 99 s~D~~i~lWd~~~~~~~~~~-------~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~ 171 (321)
T 3ow8_A 99 SLDAHIRLWDLENGKQIKSI-------DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIA 171 (321)
T ss_dssp ETTSEEEEEETTTTEEEEEE-------ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEE
T ss_pred eCCCcEEEEECCCCCEEEEE-------eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEE
Confidence 99999999999887642211 12346788899999999999999999999999999988777777777899999
Q ss_pred EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (261)
Q Consensus 162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~ 241 (261)
|+|++++|++++.|+.|++||+++++.+..+..|.. +|.+++|+|++++ +++++.|+.|++||+++++.+..+.
T Consensus 172 ~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~spd~~~-----l~s~s~dg~i~iwd~~~~~~~~~~~ 245 (321)
T 3ow8_A 172 YSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAM-PIRSLTFSPDSQL-----LVTASDDGYIKIYDVQHANLAGTLS 245 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-CCCEEEECTTSCE-----EEEECTTSCEEEEETTTCCEEEEEC
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCC-ceeEEEEcCCCCE-----EEEEcCCCeEEEEECCCcceeEEEc
Confidence 999999999999999999999999999999887755 6999999999998 7899999999999999999888888
Q ss_pred ccCcCeeEEEEeeCCCEEeC
Q 024868 242 LLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 242 ~~~~~v~~~~~s~dg~~la~ 261 (261)
.|...|.+++|+|+|++|++
T Consensus 246 ~h~~~v~~~~~sp~~~~l~s 265 (321)
T 3ow8_A 246 GHASWVLNVAFCPDDTHFVS 265 (321)
T ss_dssp CCSSCEEEEEECTTSSEEEE
T ss_pred CCCCceEEEEECCCCCEEEE
Confidence 99999999999999999874
No 3
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.9e-40 Score=256.77 Aligned_cols=229 Identities=13% Similarity=0.070 Sum_probs=187.0
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
..+|++++|+|+ ..+++|+.++ .|..||..+++. .......+.+|.+.|.+++|+|++++|++++.
T Consensus 82 ~~~v~~~~~s~d----~~l~~~s~dg--------~v~lWd~~~~~~--~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~ 147 (344)
T 4gqb_B 82 EAGVADLTWVGE----RGILVASDSG--------AVELWELDENET--LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK 147 (344)
T ss_dssp SSCEEEEEEETT----TEEEEEETTS--------EEEEEEECTTSS--CEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCEEEEEEeCC----CeEEEEECCC--------EEEEEeccCCCc--eeEeeccccCCCCCEEEEEECCCCCEEEEEeC
Confidence 357999999985 3678888999 788888776543 11223456789999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCc-EEEEeccCCeEEEEEccCceEEeeccc--cCCceeEE
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPSLRIILDEPK--AHKSVLDM 160 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~v~~~ 160 (261)
|++|++||+.+++... ....|...|.+++|+|++. +|++++.|++|++||+++++....+.. +...+.++
T Consensus 148 d~~i~iwd~~~~~~~~-------~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 220 (344)
T 4gqb_B 148 DICIKVWDLAQQVVLS-------SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSL 220 (344)
T ss_dssp TSCEEEEETTTTEEEE-------EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEE
T ss_pred CCeEEEEECCCCcEEE-------EEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceee
Confidence 9999999998876421 1224678999999999874 788999999999999999887665543 33468999
Q ss_pred EEcCC-CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868 161 DFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (261)
Q Consensus 161 ~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~ 239 (261)
+|+|+ +++|++++.|+.|++||+++++++..+..|.. .|++++|+|++..+ +++++.|++|++||+++++.+ .
T Consensus 221 ~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~fsp~g~~~----lasgs~D~~i~vwd~~~~~~~-~ 294 (344)
T 4gqb_B 221 AWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQ-CVTGLVFSPHSVPF----LASLSEDCSLAVLDSSLSELF-R 294 (344)
T ss_dssp EECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSS-CEEEEEECSSSSCC----EEEEETTSCEEEECTTCCEEE-E
T ss_pred eecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCC-CEEEEEEccCCCeE----EEEEeCCCeEEEEECCCCcEE-E
Confidence 99994 67889999999999999999999999988766 69999999998642 688999999999999998866 4
Q ss_pred eeccCcCeeEEEEeeCCCEE
Q 024868 240 KRLLRKPASVLSISLDGKYL 259 (261)
Q Consensus 240 ~~~~~~~v~~~~~s~dg~~l 259 (261)
+..|...|.+++|+|+++.|
T Consensus 295 ~~~H~~~V~~v~~sp~~~~l 314 (344)
T 4gqb_B 295 SQAHRDFVRDATWSPLNHSL 314 (344)
T ss_dssp ECCCSSCEEEEEECSSSTTE
T ss_pred EcCCCCCEEEEEEeCCCCeE
Confidence 67899999999999998754
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=9.5e-40 Score=251.45 Aligned_cols=229 Identities=10% Similarity=0.079 Sum_probs=198.1
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
..+|++++|+|+ ..++++|+.++ .+..||..+... ...+..|...|.+++|+|++++|++++.
T Consensus 13 ~~~V~~~~fsp~---~~~l~s~~~dg--------~v~lWd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~s~s~ 75 (304)
T 2ynn_A 13 SDRVKGIDFHPT---EPWVLTTLYSG--------RVELWNYETQVE------VRSIQVTETPVRAGKFIARKNWIIVGSD 75 (304)
T ss_dssp CSCEEEEEECSS---SSEEEEEETTS--------EEEEEETTTTEE------EEEEECCSSCEEEEEEEGGGTEEEEEET
T ss_pred CCceEEEEECCC---CCEEEEEcCCC--------cEEEEECCCCce------eEEeeccCCcEEEEEEeCCCCEEEEECC
Confidence 578999999996 56899999999 899999887664 5567889999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE-EeeccccCCceeEEEE
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-ILDEPKAHKSVLDMDF 162 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~ 162 (261)
|++|++||+.+++.... ...|...|.+++|+|++++|++++.|++|++||++++.. ...+..|...|.+++|
T Consensus 76 d~~i~vwd~~~~~~~~~-------~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~ 148 (304)
T 2ynn_A 76 DFRIRVFNYNTGEKVVD-------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148 (304)
T ss_dssp TSEEEEEETTTCCEEEE-------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEE
T ss_pred CCEEEEEECCCCcEEEE-------EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEE
Confidence 99999999988764221 224668899999999999999999999999999988743 3455667778999999
Q ss_pred cC-CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEec--CCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868 163 SL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK--DGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (261)
Q Consensus 163 s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~ 239 (261)
+| ++.+|++++.|+.|++||++++++...+..++...+..+.|+| ++++ +++++.|++|++||+++++.+..
T Consensus 149 ~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----l~s~s~D~~i~iWd~~~~~~~~~ 223 (304)
T 2ynn_A 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY-----MITASDDLTIKIWDYQTKSCVAT 223 (304)
T ss_dssp CTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCE-----EEEEETTSEEEEEETTTTEEEEE
T ss_pred CCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCE-----EEEEcCCCeEEEEeCCCCcccee
Confidence 99 6789999999999999999988877777666555699999987 5566 68999999999999999999999
Q ss_pred eeccCcCeeEEEEeeCCCEEeC
Q 024868 240 KRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 240 ~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+..|...|.+++|+|++++|++
T Consensus 224 ~~~h~~~v~~~~~~p~~~~l~s 245 (304)
T 2ynn_A 224 LEGHMSNVSFAVFHPTLPIIIS 245 (304)
T ss_dssp EECCSSCEEEEEECSSSSEEEE
T ss_pred eCCCCCCEEEEEECCCCCEEEE
Confidence 9999999999999999998874
No 5
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8.5e-40 Score=261.62 Aligned_cols=228 Identities=13% Similarity=0.116 Sum_probs=202.7
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
.++|+|++|+|+ ..++++|+.|+ .|..||..++.. ...+.+|.+.|.+++|+|++++|++|+.
T Consensus 108 ~~~V~~~~~~p~---~~~l~s~s~Dg--------~i~vwd~~~~~~------~~~l~~h~~~V~~v~~~~~~~~l~sgs~ 170 (410)
T 1vyh_C 108 RSPVTRVIFHPV---FSVMVSASEDA--------TIKVWDYETGDF------ERTLKGHTDSVQDISFDHSGKLLASCSA 170 (410)
T ss_dssp SSCEEEEEECSS---SSEEEEEESSS--------CEEEEETTTCCC------CEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCcEEEEEEcCC---CCEEEEEeCCC--------eEEEEECCCCcE------EEEEeccCCcEEEEEEcCCCCEEEEEeC
Confidence 578999999996 56899999999 888888877665 4568899999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
|++|++||+.+.... .....|...|.+++|+|++++|++++.|++|++||++++..+..+..|...|.++.|+
T Consensus 171 D~~i~iwd~~~~~~~-------~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~ 243 (410)
T 1vyh_C 171 DMTIKLWDFQGFECI-------RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243 (410)
T ss_dssp TSCCCEEETTSSCEE-------ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred CCeEEEEeCCCCcee-------EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEEC
Confidence 999999999876541 1223456789999999999999999999999999999999888888888899999999
Q ss_pred CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecC--------------------CCcceEEEEEeeCCC
Q 024868 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD--------------------GTKPFLFCTVQRGDK 223 (261)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~--------------------~~~~~~~~~~~~~~d 223 (261)
|++++|++++.|+.|++||+.++++...+..|.. .|.+++|+|+ |.+ +++++.|
T Consensus 244 ~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----l~sgs~D 317 (410)
T 1vyh_C 244 QDGTLIASCSNDQTVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSETKKSGKPGPF-----LLSGSRD 317 (410)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-------CCE-----EEEEETT
T ss_pred CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCc-eEEEEEEcCcccccchhhhccccccccCCCCCE-----EEEEeCC
Confidence 9999999999999999999999999988887765 6999999997 444 6889999
Q ss_pred cEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 224 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+.|++||+++++.+..+..|...|.+++|+|+|++|++
T Consensus 318 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s 355 (410)
T 1vyh_C 318 KTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILS 355 (410)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEE
T ss_pred CeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEE
Confidence 99999999999999888999999999999999998873
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.9e-39 Score=258.55 Aligned_cols=228 Identities=15% Similarity=0.178 Sum_probs=202.4
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
..+|++++|+|+ ..++++|+.|+ .|..||..+... ...+.+|...|.+++|+|++++|++++.
T Consensus 150 ~~~V~~v~~~~~---~~~l~sgs~D~--------~i~iwd~~~~~~------~~~~~~h~~~V~~v~~~p~~~~l~s~s~ 212 (410)
T 1vyh_C 150 TDSVQDISFDHS---GKLLASCSADM--------TIKLWDFQGFEC------IRTMHGHDHNVSSVSIMPNGDHIVSASR 212 (410)
T ss_dssp SSCEEEEEECTT---SSEEEEEETTS--------CCCEEETTSSCE------EECCCCCSSCEEEEEECSSSSEEEEEET
T ss_pred CCcEEEEEEcCC---CCEEEEEeCCC--------eEEEEeCCCCce------eEEEcCCCCCEEEEEEeCCCCEEEEEeC
Confidence 578999999985 56899999999 777788776654 5578899999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
|++|++||+.++..... ...|...|.++.|+|++++|++++.|+.|++||+.+++....+..|...|.+++|+
T Consensus 213 D~~i~~wd~~~~~~~~~-------~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~ 285 (410)
T 1vyh_C 213 DKTIKMWEVQTGYCVKT-------FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA 285 (410)
T ss_dssp TSEEEEEETTTCCEEEE-------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred CCeEEEEECCCCcEEEE-------EeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEc
Confidence 99999999988764221 12356789999999999999999999999999999998887888888899999999
Q ss_pred CC--------------------CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC
Q 024868 164 LD--------------------SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK 223 (261)
Q Consensus 164 ~~--------------------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d 223 (261)
|+ +.+|++++.|+.|++||+++++++..+..|.. .|++++|+|+|++ +++++.|
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~-----l~s~s~D 359 (410)
T 1vyh_C 286 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKF-----ILSCADD 359 (410)
T ss_dssp CSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSC-----EEEEETT
T ss_pred CcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCE-----EEEEeCC
Confidence 96 67899999999999999999999999987765 6999999999998 6899999
Q ss_pred cEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 224 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+.|++||+++++.+..+..|...|.+++|+|++++||+
T Consensus 360 ~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 397 (410)
T 1vyh_C 360 KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT 397 (410)
T ss_dssp TEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEE
T ss_pred CeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEE
Confidence 99999999999988888999999999999999998874
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.9e-38 Score=244.24 Aligned_cols=225 Identities=17% Similarity=0.228 Sum_probs=194.6
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
..+|.+++|+|+ .+++++|+.++ .|..||..++.. ...+.+|.+.|.+++|+|++++|++++.
T Consensus 55 ~~~v~~~~~~~~---~~~l~s~s~d~--------~i~vwd~~~~~~------~~~~~~h~~~v~~~~~~~~~~~l~sgs~ 117 (304)
T 2ynn_A 55 ETPVRAGKFIAR---KNWIIVGSDDF--------RIRVFNYNTGEK------VVDFEAHPDYIRSIAVHPTKPYVLSGSD 117 (304)
T ss_dssp SSCEEEEEEEGG---GTEEEEEETTS--------EEEEEETTTCCE------EEEEECCSSCEEEEEECSSSSEEEEEET
T ss_pred CCcEEEEEEeCC---CCEEEEECCCC--------EEEEEECCCCcE------EEEEeCCCCcEEEEEEcCCCCEEEEECC
Confidence 578999999996 67899999999 899999887765 5678899999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeecccc-CCceeEEE
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKA-HKSVLDMD 161 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~ 161 (261)
|++|++||+.++..... ....|...|.+++|+| ++.+|++++.|++|++||+++.........+ ...+..+.
T Consensus 118 D~~v~lWd~~~~~~~~~------~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~ 191 (304)
T 2ynn_A 118 DLTVKLWNWENNWALEQ------TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191 (304)
T ss_dssp TSCEEEEEGGGTTEEEE------EECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEE
T ss_pred CCeEEEEECCCCcchhh------hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEE
Confidence 99999999987643111 1224567899999999 6789999999999999999877654444433 35789999
Q ss_pred EcC--CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868 162 FSL--DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (261)
Q Consensus 162 ~s~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~ 239 (261)
|+| ++++|++++.|+.|++||+++++++..+..|.. .|.+++|+|++++ +++++.||+|++||+++++.+..
T Consensus 192 ~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~-----l~s~s~Dg~i~iWd~~~~~~~~~ 265 (304)
T 2ynn_A 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS-NVSFAVFHPTLPI-----IISGSEDGTLKIWNSSTYKVEKT 265 (304)
T ss_dssp ECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSE-----EEEEETTSCEEEEETTTCCEEEE
T ss_pred EEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC-CEEEEEECCCCCE-----EEEEcCCCeEEEEECCCCceeee
Confidence 987 778999999999999999999999999988766 5999999999997 78999999999999999999988
Q ss_pred eeccCcCeeEEEEeeCCC
Q 024868 240 KRLLRKPASVLSISLDGK 257 (261)
Q Consensus 240 ~~~~~~~v~~~~~s~dg~ 257 (261)
+..+...+.+++|+|+++
T Consensus 266 ~~~~~~~~~~~~~~~~~~ 283 (304)
T 2ynn_A 266 LNVGLERSWCIATHPTGR 283 (304)
T ss_dssp ECCSSSSEEEEEECTTCG
T ss_pred ccCCCccEEEEEECCCCC
Confidence 888889999999999885
No 8
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.1e-38 Score=245.97 Aligned_cols=231 Identities=16% Similarity=0.231 Sum_probs=197.7
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
.++|++++|+|+ ..++++|+.|+ .+..||..+... ...+..|...|.+++|+|++++|++++.
T Consensus 55 ~~~v~~~~~s~d---~~~l~s~s~Dg--------~v~iWd~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 117 (340)
T 1got_B 55 LAKIYAMHWGTD---SRLLLSASQDG--------KLIIWDSYTTNK------VHAIPLRSSWVMTCAYAPSGNYVACGGL 117 (340)
T ss_dssp SSCEEEEEECTT---SSEEEEEETTT--------EEEEEETTTCCE------EEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred CCceEEEEECCC---CCEEEEEeCCC--------cEEEEECCCCCc------ceEeecCCccEEEEEECCCCCEEEEEeC
Confidence 579999999985 56899999999 899999877654 5567889999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
|+.+++|++.+........ .....|.+.+.++.|++++. +++++.|+.|++||+++++.+..+..|...|.+++|+
T Consensus 118 d~~v~iw~~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~ 193 (340)
T 1got_B 118 DNICSIYNLKTREGNVRVS---RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 193 (340)
T ss_dssp TCEEEEEETTTCSBSCEEE---EEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred CCeEEEEECccCCCcceeE---EEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEEC
Confidence 9999999997754322211 11234568899999999876 7888899999999999999888888888899999999
Q ss_pred CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc
Q 024868 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL 243 (261)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~ 243 (261)
|+++++++++.|+.|++||+++++++..+..|.. .|.+++|+|++++ +++++.|++|++||+++++.+..+...
T Consensus 194 ~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~-----l~s~s~d~~v~iwd~~~~~~~~~~~~~ 267 (340)
T 1got_B 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNA-----FATGSDDATCRLFDLRADQELMTYSHD 267 (340)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSE-----EEEEETTSCEEEEETTTTEEEEEECCT
T ss_pred CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcC-CEEEEEEcCCCCE-----EEEEcCCCcEEEEECCCCcEEEEEccC
Confidence 9999999999999999999999999999887765 6999999999998 689999999999999998877555422
Q ss_pred --CcCeeEEEEeeCCCEEeC
Q 024868 244 --RKPASVLSISLDGKYLAM 261 (261)
Q Consensus 244 --~~~v~~~~~s~dg~~la~ 261 (261)
...+.+++|+|+|++|++
T Consensus 268 ~~~~~v~~~~~s~~g~~l~~ 287 (340)
T 1got_B 268 NIICGITSVSFSKSGRLLLA 287 (340)
T ss_dssp TCCSCEEEEEECTTSSEEEE
T ss_pred CcccceEEEEECCCCCEEEE
Confidence 247999999999999874
No 9
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.6e-38 Score=246.34 Aligned_cols=232 Identities=17% Similarity=0.149 Sum_probs=198.3
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
..+|.+++|+|+ ..++++|+.++ .+..|+..+... .......+.+|.+.|.++.|++++. +++++.
T Consensus 97 ~~~v~~~~~s~~---~~~l~s~~~d~--------~v~iw~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~ 162 (340)
T 1got_B 97 SSWVMTCAYAPS---GNYVACGGLDN--------ICSIYNLKTREG--NVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSG 162 (340)
T ss_dssp SSCEEEEEECTT---SSEEEEEETTC--------EEEEEETTTCSB--SCEEEEEEECCSSCEEEEEEEETTE-EEEEET
T ss_pred CccEEEEEECCC---CCEEEEEeCCC--------eEEEEECccCCC--cceeEEEecCCCccEEEEEECCCCc-EEEEEC
Confidence 467999999995 56899999999 888888765431 1223456789999999999998875 888999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
|++|++||+.++.... ....|...|.+++|+|+++++++++.|+.|++||+++++....+..|...|.+++|+
T Consensus 163 d~~i~~wd~~~~~~~~-------~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~ 235 (340)
T 1got_B 163 DTTCALWDIETGQQTT-------TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF 235 (340)
T ss_dssp TSCEEEEETTTTEEEE-------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC
T ss_pred CCcEEEEECCCCcEEE-------EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEc
Confidence 9999999998876421 112356789999999999999999999999999999998888888888899999999
Q ss_pred CCCCEEEEecCCCcEEEEEccCCcEEEEEeecC-CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (261)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~ 242 (261)
|++++|++++.|+.|++||+++++.+..+..+. ...+.+++|+|+|++ +++++.|+.|++||+.+++.+..+..
T Consensus 236 p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-----l~~g~~d~~i~vwd~~~~~~~~~~~~ 310 (340)
T 1got_B 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL-----LLAGYDDFNCNVWDALKADRAGVLAG 310 (340)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE-----EEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCE-----EEEECCCCeEEEEEcccCcEeeEeec
Confidence 999999999999999999999998877765322 235999999999998 68999999999999999999888999
Q ss_pred cCcCeeEEEEeeCCCEEeC
Q 024868 243 LRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 243 ~~~~v~~~~~s~dg~~la~ 261 (261)
|...|.+++|+|||++||+
T Consensus 311 h~~~v~~~~~s~dg~~l~s 329 (340)
T 1got_B 311 HDNRVSCLGVTDDGMAVAT 329 (340)
T ss_dssp CSSCEEEEEECTTSSCEEE
T ss_pred CCCcEEEEEEcCCCCEEEE
Confidence 9999999999999999874
No 10
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.2e-37 Score=239.06 Aligned_cols=234 Identities=14% Similarity=0.203 Sum_probs=197.2
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
..+|++++|+|+ ..++++|+.++ .+..|+..+... ...+.+|...|.+++|+|++++|++++.
T Consensus 23 ~~~v~~~~~s~~---~~~l~s~~~dg--------~i~iw~~~~~~~------~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 85 (312)
T 4ery_A 23 TKAVSSVKFSPN---GEWLASSSADK--------LIKIWGAYDGKF------EKTISGHKLGISDVAWSSDSNLLVSASD 85 (312)
T ss_dssp SSCEEEEEECTT---SSEEEEEETTS--------CEEEEETTTCCE------EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCcEEEEEECCC---CCEEEEeeCCC--------eEEEEeCCCccc------chhhccCCCceEEEEEcCCCCEEEEECC
Confidence 578999999995 56899999999 788888876654 5567899999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
|+.|++||+.+++.... ...|...|.+++|+|++++|++++.|+.|++||+++++....+..|..+|.+++|+
T Consensus 86 d~~i~vwd~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 158 (312)
T 4ery_A 86 DKTLKIWDVSSGKCLKT-------LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158 (312)
T ss_dssp TSEEEEEETTTCCEEEE-------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred CCEEEEEECCCCcEEEE-------EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEc
Confidence 99999999987764221 12356789999999999999999999999999999998888888888899999999
Q ss_pred CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEE----------------------------
Q 024868 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF---------------------------- 215 (261)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~---------------------------- 215 (261)
|++++|++++.|+.|++||+++++.+..+......++..++|+|++++++..
T Consensus 159 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 238 (312)
T 4ery_A 159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 238 (312)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSS
T ss_pred CCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceE
Confidence 9999999999999999999999998887765555568888999887752111
Q ss_pred ------------EEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 216 ------------CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 216 ------------~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
.+++++.||.|++||+++++.+..+..|...|.+++|+|++++|++
T Consensus 239 ~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s 296 (312)
T 4ery_A 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 296 (312)
T ss_dssp CCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred EEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEE
Confidence 1355677888888888888877777888889999999999998873
No 11
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7.9e-38 Score=245.60 Aligned_cols=235 Identities=14% Similarity=0.136 Sum_probs=196.0
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
...|.+++|+|+ ..++++|+.++ .+..|+...............+..|.+.|.+++|+|+++.|++++.
T Consensus 106 ~~~v~~~~~sp~---g~~lasg~~d~--------~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~ 174 (354)
T 2pbi_B 106 CTWVMACAYAPS---GCAIACGGLDN--------KCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG 174 (354)
T ss_dssp SSCCCEEEECTT---SSEEEEESTTS--------EEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEET
T ss_pred CCCEEEEEECCC---CCEEEEeeCCC--------CEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeC
Confidence 456889999996 66899999998 6777765432211111223456789999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEE
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~ 161 (261)
|++|++||+.+++.... ...|...|.+++|+| ++++|++++.|+.|++||+++++.+..+..|...|.+++
T Consensus 175 D~~v~lwd~~~~~~~~~-------~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~ 247 (354)
T 2pbi_B 175 DGTCALWDVESGQLLQS-------FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVR 247 (354)
T ss_dssp TSEEEEEETTTCCEEEE-------EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred CCcEEEEeCCCCeEEEE-------EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEE
Confidence 99999999988764211 123567899999988 578999999999999999999998888888888999999
Q ss_pred EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecC-CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (261)
Q Consensus 162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~ 240 (261)
|+|++++|++++.|+.|++||+++++.+..+..+. ...+.+++|+|+|++ +++++.|+.|++||+.+++.+..+
T Consensus 248 ~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~-----l~~g~~d~~i~vwd~~~~~~~~~l 322 (354)
T 2pbi_B 248 YYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRL-----LFAGYNDYTINVWDVLKGSRVSIL 322 (354)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE-----EEEEETTSCEEEEETTTCSEEEEE
T ss_pred EeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCE-----EEEEECCCcEEEEECCCCceEEEE
Confidence 99999999999999999999999988777665432 235889999999998 688999999999999999988888
Q ss_pred eccCcCeeEEEEeeCCCEEeC
Q 024868 241 RLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 241 ~~~~~~v~~~~~s~dg~~la~ 261 (261)
..|...|.+++|+|||++||+
T Consensus 323 ~~h~~~v~~l~~spdg~~l~s 343 (354)
T 2pbi_B 323 FGHENRVSTLRVSPDGTAFCS 343 (354)
T ss_dssp CCCSSCEEEEEECTTSSCEEE
T ss_pred ECCCCcEEEEEECCCCCEEEE
Confidence 899999999999999999874
No 12
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.2e-37 Score=241.34 Aligned_cols=233 Identities=12% Similarity=0.120 Sum_probs=195.0
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
..++|++++|+|+ ..+++++|+.|+ .+..|+...... ........+.+|...|.+++|+|++++|++++
T Consensus 16 H~~~V~~l~~~~~--~~~~l~s~s~D~--------~v~~W~~~~~~~-~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 84 (319)
T 3frx_A 16 HNGWVTSLATSAG--QPNLLLSASRDK--------TLISWKLTGDDQ-KFGVPVRSFKGHSHIVQDCTLTADGAYALSAS 84 (319)
T ss_dssp CSSCEEEEEECSS--CTTEEEEEETTS--------EEEEEEEEEETT-EEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ccceEEEEEccCC--CccEEEEecCCc--------cEEEecCCCCCc-cccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence 3689999999985 257899999999 777777643211 01123456889999999999999999999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 162 (261)
.|++|++||+.+++... ....|...|.+++|+|++++|++++.|++|++||++. +.+..+..|...+.++.|
T Consensus 85 ~D~~v~~wd~~~~~~~~-------~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~ 156 (319)
T 3frx_A 85 WDKTLRLWDVATGETYQ-------RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRV 156 (319)
T ss_dssp TTSEEEEEETTTTEEEE-------EEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEE
T ss_pred CCCEEEEEECCCCCeeE-------EEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEE
Confidence 99999999998876422 1234678899999999999999999999999999864 455677778889999999
Q ss_pred cCC------CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868 163 SLD------SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (261)
Q Consensus 163 s~~------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~ 236 (261)
+|. +..+++++.|+.|++||+++++....+..|.. .|.+++|+|+|++ +++++.|+.|++||+++++.
T Consensus 157 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~-----l~s~~~dg~i~iwd~~~~~~ 230 (319)
T 3frx_A 157 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTL-----IASAGKDGEIMLWNLAAKKA 230 (319)
T ss_dssp CCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSE-----EEEEETTCEEEEEETTTTEE
T ss_pred ccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCC-cEEEEEEcCCCCE-----EEEEeCCCeEEEEECCCCcE
Confidence 985 44899999999999999999998888887765 6999999999998 78999999999999999998
Q ss_pred EeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 237 IGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 237 ~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+..+.. ...+.+++|+|++.+|++
T Consensus 231 ~~~~~~-~~~v~~~~~sp~~~~la~ 254 (319)
T 3frx_A 231 MYTLSA-QDEVFSLAFSPNRYWLAA 254 (319)
T ss_dssp EEEEEC-CSCEEEEEECSSSSEEEE
T ss_pred EEEecC-CCcEEEEEEcCCCCEEEE
Confidence 876664 468999999999998873
No 13
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.8e-37 Score=245.05 Aligned_cols=225 Identities=15% Similarity=0.211 Sum_probs=190.9
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG 85 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 85 (261)
.|.+++|+|+ ..++++|+.++ .|..||..+... ...+.+|...|.+++|+|++++|++++.|+
T Consensus 125 ~v~~v~~s~d---g~~l~s~~~d~--------~i~iwd~~~~~~------~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~ 187 (393)
T 1erj_A 125 YIRSVCFSPD---GKFLATGAEDR--------LIRIWDIENRKI------VMILQGHEQDIYSLDYFPSGDKLVSGSGDR 187 (393)
T ss_dssp BEEEEEECTT---SSEEEEEETTS--------CEEEEETTTTEE------EEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eEEEEEECCC---CCEEEEEcCCC--------eEEEEECCCCcE------EEEEccCCCCEEEEEEcCCCCEEEEecCCC
Confidence 4899999985 56899999999 888889877664 567889999999999999999999999999
Q ss_pred cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeec-------cccCCce
Q 024868 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDE-------PKAHKSV 157 (261)
Q Consensus 86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~-------~~~~~~v 157 (261)
+|++||+.+++.. ..+.+...+.+++|+| ++++|++++.|+.|++||+++++.+..+ ..|...|
T Consensus 188 ~v~iwd~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v 259 (393)
T 1erj_A 188 TVRIWDLRTGQCS--------LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 259 (393)
T ss_dssp EEEEEETTTTEEE--------EEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCE
T ss_pred cEEEEECCCCeeE--------EEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCE
Confidence 9999999887642 2223456799999999 8999999999999999999988765544 3566789
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEEccCC------------cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcE
Q 024868 158 LDMDFSLDSEFLATTSTDGSARIWKTEDG------------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225 (261)
Q Consensus 158 ~~~~~s~~~~~l~~~~~d~~i~iwd~~~~------------~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~ 225 (261)
.+++|+|++++|++++.|+.|++||+++. .+...+..|.. .|.+++|+|++++ +++++.|+.
T Consensus 260 ~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~-----l~sgs~D~~ 333 (393)
T 1erj_A 260 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEY-----ILSGSKDRG 333 (393)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSS-CEEEEEECGGGCE-----EEEEETTSE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccC-cEEEEEECCCCCE-----EEEEeCCCe
Confidence 99999999999999999999999999753 34455666655 6999999999998 689999999
Q ss_pred EEEEECCCCeEEeeeeccCcCeeEEEEee------CCCEEeC
Q 024868 226 LAVYDISTWNKIGHKRLLRKPASVLSISL------DGKYLAM 261 (261)
Q Consensus 226 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~------dg~~la~ 261 (261)
|++||+++++.+..+..|...|.+++|++ ++++||+
T Consensus 334 v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~s 375 (393)
T 1erj_A 334 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 375 (393)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred EEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEE
Confidence 99999999999888899999999999986 6777763
No 14
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7.2e-37 Score=240.15 Aligned_cols=235 Identities=18% Similarity=0.237 Sum_probs=196.9
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
...+|+|++|+|+ ..++++|+.|+ .+..||..+... ...+..|...|.+++|+|+++.|++++
T Consensus 63 H~~~V~~~~~s~d---~~~l~s~s~Dg--------~v~vWd~~~~~~------~~~~~~~~~~v~~~~~sp~g~~lasg~ 125 (354)
T 2pbi_B 63 HGNKVLCMDWCKD---KRRIVSSSQDG--------KVIVWDSFTTNK------EHAVTMPCTWVMACAYAPSGCAIACGG 125 (354)
T ss_dssp CSSCEEEEEECTT---SSEEEEEETTS--------EEEEEETTTCCE------EEEEECSSSCCCEEEECTTSSEEEEES
T ss_pred CCCeEEEEEECCC---CCEEEEEeCCC--------eEEEEECCCCCc------ceEEecCCCCEEEEEECCCCCEEEEee
Confidence 3578999999985 56899999999 899999876654 456777888999999999999999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 162 (261)
.|+.+++|++......... ........|...|.+++|+|+++.|++++.|++|++||+++++.+..+..|...|.+++|
T Consensus 126 ~d~~i~v~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~ 204 (354)
T 2pbi_B 126 LDNKCSVYPLTFDKNENMA-AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDL 204 (354)
T ss_dssp TTSEEEEEECCCCTTCCSG-GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred CCCCEEEEEEecccccccc-ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEE
Confidence 9999999998654321100 000111235688999999999999999999999999999999988888888889999999
Q ss_pred cC--CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868 163 SL--DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (261)
Q Consensus 163 s~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~ 240 (261)
+| ++++|++++.|+.|++||+++++++..+..|.. .|.+++|+|++++ +++++.|++|++||+++++.+..+
T Consensus 205 ~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~-----l~s~s~D~~v~lwd~~~~~~~~~~ 278 (354)
T 2pbi_B 205 APSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES-DVNSVRYYPSGDA-----FASGSDDATCRLYDLRADREVAIY 278 (354)
T ss_dssp CCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSE-----EEEEETTSCEEEEETTTTEEEEEE
T ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC-CeEEEEEeCCCCE-----EEEEeCCCeEEEEECCCCcEEEEE
Confidence 87 578999999999999999999999998887765 6999999999998 689999999999999998876555
Q ss_pred ecc--CcCeeEEEEeeCCCEEeC
Q 024868 241 RLL--RKPASVLSISLDGKYLAM 261 (261)
Q Consensus 241 ~~~--~~~v~~~~~s~dg~~la~ 261 (261)
..+ ...+.+++|+|+|++|++
T Consensus 279 ~~~~~~~~~~~~~~s~~g~~l~~ 301 (354)
T 2pbi_B 279 SKESIIFGASSVDFSLSGRLLFA 301 (354)
T ss_dssp CCTTCCSCEEEEEECTTSSEEEE
T ss_pred cCCCcccceeEEEEeCCCCEEEE
Confidence 433 246889999999999874
No 15
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1e-37 Score=245.24 Aligned_cols=231 Identities=12% Similarity=0.091 Sum_probs=182.2
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
...|++++|+|+ . .+++++.++ .|..||..+++... .......+|.+.|.+++|+|++++|++++.
T Consensus 94 ~~~V~~~~~s~d---~-~~l~~s~dg--------~v~lWd~~~~~~~~--~~~~~~~~h~~~V~~v~~spdg~~l~sgs~ 159 (357)
T 4g56_B 94 EAGVTDVAWVSE---K-GILVASDSG--------AVELWEILEKESLL--VNKFAKYEHDDIVKTLSVFSDGTQAVSGGK 159 (357)
T ss_dssp SSCEEEEEEETT---T-EEEEEETTS--------CEEEC--------C--CCCEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred CCCEEEEEEcCC---C-CEEEEECCC--------EEEEeeccccceeE--EEeeccCCCCCCEEEEEECCCCCEEEEEeC
Confidence 456999999985 3 355566778 67778876654311 122345689999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCc-EEEEeccCCeEEEEEccCceEEeecc--ccCCceeEE
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPSLRIILDEP--KAHKSVLDM 160 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~v~~~ 160 (261)
|+.|++||+.++..... ...|...|.+++|+|++. ++++++.|+.|++||+++++...... .+...+.++
T Consensus 160 dg~v~iwd~~~~~~~~~-------~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v 232 (357)
T 4g56_B 160 DFSVKVWDLSQKAVLKS-------YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSV 232 (357)
T ss_dssp TSCEEEEETTTTEEEEE-------ECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEE
T ss_pred CCeEEEEECCCCcEEEE-------EcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccch
Confidence 99999999988764211 123568899999999875 78899999999999999887654433 344579999
Q ss_pred EEcCC-CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868 161 DFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (261)
Q Consensus 161 ~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~ 239 (261)
+|+|+ +.+|++++.|+.|++||+++++++..+..+.. .|++++|+|+++.+ +++++.|++|++||+++++.+..
T Consensus 233 ~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~----lasgs~D~~i~iwd~~~~~~~~~ 307 (357)
T 4g56_B 233 TWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQ-NITGLAYSYHSSPF----LASISEDCTVAVLDADFSEVFRD 307 (357)
T ss_dssp EECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSS-CEEEEEECSSSSCC----EEEEETTSCEEEECTTSCEEEEE
T ss_pred hhhhcccceEEEeecccceeEEECCCCcEeEEEeccce-eEEEEEEcCCCCCE----EEEEeCCCEEEEEECCCCcEeEE
Confidence 99997 56888999999999999999999998887765 69999999998642 58899999999999999987754
Q ss_pred eeccCcCeeEEEEee-CCCEEeC
Q 024868 240 KRLLRKPASVLSISL-DGKYLAM 261 (261)
Q Consensus 240 ~~~~~~~v~~~~~s~-dg~~la~ 261 (261)
..|...|.+++|+| |+++||+
T Consensus 308 -~~H~~~V~~vafsP~d~~~l~s 329 (357)
T 4g56_B 308 -LSHRDFVTGVAWSPLDHSKFTT 329 (357)
T ss_dssp -CCCSSCEEEEEECSSSTTEEEE
T ss_pred -CCCCCCEEEEEEeCCCCCEEEE
Confidence 47889999999998 7888874
No 16
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.1e-39 Score=253.86 Aligned_cols=232 Identities=11% Similarity=0.110 Sum_probs=182.1
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
.++|+|++|+|+ ..++++|+.++ .|..||..+... .....+.+|...|.+++|+|++++|++++.
T Consensus 11 ~~~v~~~~~s~~---g~~l~~~~~d~--------~i~iw~~~~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~ 75 (377)
T 3dwl_C 11 PKPSYEHAFNSQ---RTEFVTTTATN--------QVELYEQDGNGW----KHARTFSDHDKIVTCVDWAPKSNRIVTCSQ 75 (377)
T ss_dssp SSCCSCCEECSS---SSEEECCCSSS--------CBCEEEEETTEE----EECCCBCCCSSCEEEEEECTTTCCEEEEET
T ss_pred CCcEEEEEECCC---CCEEEEecCCC--------EEEEEEccCCce----EEEEEEecCCceEEEEEEeCCCCEEEEEeC
Confidence 578999999995 56899998888 566666655421 124567889999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE---Eeeccc-cCCceeE
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI---ILDEPK-AHKSVLD 159 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~-~~~~v~~ 159 (261)
|+.|++||+.++..... ......|...|.+++|+|++++|++++.|+.|++||+++++. ...+.. |...|.+
T Consensus 76 d~~v~vwd~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~ 151 (377)
T 3dwl_C 76 DRNAYVYEKRPDGTWKQ----TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILS 151 (377)
T ss_dssp TSSEEEC------CCCC----EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEE
T ss_pred CCeEEEEEcCCCCceee----eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEE
Confidence 99999999988651111 122334678999999999999999999999999999988763 445555 6779999
Q ss_pred EEEcCCCCEEEEecCCCcEEEEEcc------------------CCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeC
Q 024868 160 MDFSLDSEFLATTSTDGSARIWKTE------------------DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG 221 (261)
Q Consensus 160 ~~~s~~~~~l~~~~~d~~i~iwd~~------------------~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~ 221 (261)
++|+|++++|++++.|+.|++||++ .++++..+ .| ...|.+++|+|++++ +++++
T Consensus 152 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~v~~~~~sp~~~~-----l~~~~ 224 (377)
T 3dwl_C 152 LDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PS-GGWVHAVGFSPSGNA-----LAYAG 224 (377)
T ss_dssp EEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CC-SSSEEEEEECTTSSC-----EEEEE
T ss_pred EEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cC-CceEEEEEECCCCCE-----EEEEe
Confidence 9999999999999999999999985 24455555 44 446999999999998 68899
Q ss_pred CCcEEEEEECCCCeE----EeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 222 DKALLAVYDISTWNK----IGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 222 ~d~~i~~~d~~~~~~----~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
.|+.|++||+++++. +..+..|...+.+++|+|||++|++
T Consensus 225 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 268 (377)
T 3dwl_C 225 HDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAA 268 (377)
T ss_dssp TTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEE
T ss_pred CCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEE
Confidence 999999999999876 6778888899999999999999873
No 17
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.6e-37 Score=241.63 Aligned_cols=240 Identities=15% Similarity=0.153 Sum_probs=179.7
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCC-CCCCCCceEEEEEcCCCCceec-------------------------------
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSR-ASSSPSVLEIFSFDPKTTSVYT------------------------------- 51 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~~~~~~~~~------------------------------- 51 (261)
++||+|++|+|+ ..++++||++. ..|.+|.+++|.++........
T Consensus 14 g~PV~sv~fs~d---g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~ 90 (365)
T 4h5i_A 14 GYPAYGAKFLNN---DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGC 90 (365)
T ss_dssp SSCEEEEEEEET---TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEEC
T ss_pred CCCEEEEEEeCC---CcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEE
Confidence 679999999996 56778776543 4578888899887654321100
Q ss_pred -------------CCeEEeee------------------cCCCCCceEEEECCCCCeEEEE--ecCCcEEEEEEeCCccc
Q 024868 52 -------------SPLVTYVF------------------DESEGDPMTIAVNPSGDDFVCS--TTNGGCKLFEVYGGATD 98 (261)
Q Consensus 52 -------------~~~~~~~~------------------~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~i~~~~~~~~~ 98 (261)
.......+ ..+...+.+++|+|||++++++ +.|++|++||+.+...
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~- 169 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE- 169 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE-
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE-
Confidence 00000000 1122346789999999998754 4689999999988765
Q ss_pred cceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee-c-cccCCceeEEEEcCCCCEEEEecCCC
Q 024868 99 INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-E-PKAHKSVLDMDFSLDSEFLATTSTDG 176 (261)
Q Consensus 99 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~-~~~~~~v~~~~~s~~~~~l~~~~~d~ 176 (261)
...+.+...|.+++|+|||+++++++.+ .+.+|+..+++.... . ..+...+.+++|+|+++++++++.|+
T Consensus 170 -------~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~ 241 (365)
T 4h5i_A 170 -------KFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKK 241 (365)
T ss_dssp -------EEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESS
T ss_pred -------EEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCC
Confidence 2223456789999999999999999755 566777777665433 2 33445799999999999999998876
Q ss_pred ----cEEEEEccCCcE----EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee-eccCcCe
Q 024868 177 ----SARIWKTEDGVA----WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK-RLLRKPA 247 (261)
Q Consensus 177 ----~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~v 247 (261)
.+++||+..... ...+..+.. +|++++|+|||++ +++++.|++|+|||+++++++..+ ..|...|
T Consensus 242 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~Spdg~~-----lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V 315 (365)
T 4h5i_A 242 GKGIVLTKISIKSGNTSVLRSKQVTNRFK-GITSMDVDMKGEL-----AVLASNDNSIALVKLKDLSMSKIFKQAHSFAI 315 (365)
T ss_dssp SCCEEEEEEEEETTEEEEEEEEEEESSCS-CEEEEEECTTSCE-----EEEEETTSCEEEEETTTTEEEEEETTSSSSCE
T ss_pred cceeEEeecccccceecceeeeeecCCCC-CeEeEEECCCCCc-----eEEEcCCCEEEEEECCCCcEEEEecCcccCCE
Confidence 588899887654 233444544 6999999999998 799999999999999999988764 6799999
Q ss_pred eEEEEeeCCCEEeC
Q 024868 248 SVLSISLDGKYLAM 261 (261)
Q Consensus 248 ~~~~~s~dg~~la~ 261 (261)
++++|||||++||+
T Consensus 316 ~~v~fSpdg~~laS 329 (365)
T 4h5i_A 316 TEVTISPDSTYVAS 329 (365)
T ss_dssp EEEEECTTSCEEEE
T ss_pred EEEEECCCCCEEEE
Confidence 99999999999984
No 18
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.5e-37 Score=239.65 Aligned_cols=232 Identities=11% Similarity=0.087 Sum_probs=184.2
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
++|++++|+|+ ..++++|+.|+ .|..||..+.... .......+|...|.+++|+|++++|++++.|
T Consensus 17 ~~v~~l~~sp~---g~~las~~~D~--------~i~iw~~~~~~~~---~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D 82 (345)
T 3fm0_A 17 SRCWFLAWNPA---GTLLASCGGDR--------RIRIWGTEGDSWI---CKSVLSEGHQRTVRKVAWSPCGNYLASASFD 82 (345)
T ss_dssp SCEEEEEECTT---SSCEEEEETTS--------CEEEEEEETTEEE---EEEEECSSCSSCEEEEEECTTSSEEEEEETT
T ss_pred CcEEEEEECCC---CCEEEEEcCCC--------eEEEEEcCCCcce---eeeeeccccCCcEEEEEECCCCCEEEEEECC
Confidence 48999999996 56899999999 6777776554421 1122346899999999999999999999999
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCce---EEeeccccCCceeEEE
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR---IILDEPKAHKSVLDMD 161 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~v~~~~ 161 (261)
+++++|++....... ......|...|.+++|+|++++|++++.|++|++||++++. .+..+..|...|.+++
T Consensus 83 ~~v~iw~~~~~~~~~-----~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~ 157 (345)
T 3fm0_A 83 ATTCIWKKNQDDFEC-----VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV 157 (345)
T ss_dssp SCEEEEEECCC-EEE-----EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEE
T ss_pred CcEEEEEccCCCeEE-----EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEE
Confidence 999999997654211 11123466899999999999999999999999999998653 3344556777899999
Q ss_pred EcCCCCEEEEecCCCcEEEEEccCCcE--EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC-----
Q 024868 162 FSLDSEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----- 234 (261)
Q Consensus 162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~----- 234 (261)
|+|++++|++++.|+.|++||.++++. ...+..|.. .|.+++|+|+|++ +++++.|++|++||....
T Consensus 158 ~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~-~v~~l~~sp~g~~-----l~s~s~D~~v~iW~~~~~~~~~~ 231 (345)
T 3fm0_A 158 WHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHES-TVWSLAFDPSGQR-----LASCSDDRTVRIWRQYLPGNEQG 231 (345)
T ss_dssp ECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECTTSSE-----EEEEETTSCEEEEEEECTTCTTC
T ss_pred ECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCC-ceEEEEECCCCCE-----EEEEeCCCeEEEeccccCCCCcc
Confidence 999999999999999999999988753 456666655 6999999999998 789999999999996321
Q ss_pred ----------eEEeeeec-cCcCeeEEEEeeCCCEEeC
Q 024868 235 ----------NKIGHKRL-LRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 235 ----------~~~~~~~~-~~~~v~~~~~s~dg~~la~ 261 (261)
+.+..+.. |...|.+++|+|++..||+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s 269 (345)
T 3fm0_A 232 VACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALAT 269 (345)
T ss_dssp CCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEE
T ss_pred ceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEE
Confidence 22223333 6778999999999988763
No 19
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.7e-37 Score=246.02 Aligned_cols=236 Identities=16% Similarity=0.228 Sum_probs=193.7
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
..++|++++|+|+ ..++++|+.|+ .|..||..+... ...+..|...|.+++|+|++++|++++
T Consensus 65 H~~~V~~~~~sp~---~~~l~s~s~D~--------~v~iWd~~~~~~------~~~~~~h~~~v~~~~~s~~g~~las~~ 127 (380)
T 3iz6_a 65 HSGKVYSLDWTPE---KNWIVSASQDG--------RLIVWNALTSQK------THAIKLHCPWVMECAFAPNGQSVACGG 127 (380)
T ss_dssp CSSCEEEEEECTT---SSCEEEEETTS--------EEEEEETTTTEE------EEEEECCCTTCCCCEECTTSSEEEECC
T ss_pred cccEEEEEEEcCC---CCEEEEEeCCC--------eEEEEECCCCcc------ceEEecCCCCEEEEEECCCCCEEEEee
Confidence 3679999999995 56899999999 999999877664 567888999999999999999999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC-CcEEEEeccCCeEEEEEccCceEEeec-----cccCCc
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDE-----PKAHKS 156 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~-----~~~~~~ 156 (261)
.|+.+++|++..................|.+.+.++.|+|+ +..|++++.|++|++||+.+++.+..+ ..|...
T Consensus 128 ~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~ 207 (380)
T 3iz6_a 128 LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTAD 207 (380)
T ss_dssp SSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSC
T ss_pred CCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccC
Confidence 99999999997643211111111222345678999999996 457999999999999999998876544 345668
Q ss_pred eeEEEEcC-CCCEEEEecCCCcEEEEEcc-CCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868 157 VLDMDFSL-DSEFLATTSTDGSARIWKTE-DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (261)
Q Consensus 157 v~~~~~s~-~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~ 234 (261)
|.+++|+| ++++|++++.|+.|++||++ .++.+..+..|.. .|.+++|+|++++ +++++.|++|++||++++
T Consensus 208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~-----l~s~s~D~~i~lwd~~~~ 281 (380)
T 3iz6_a 208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEG-DINSVKFFPDGQR-----FGTGSDDGTCRLFDMRTG 281 (380)
T ss_dssp EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSS-CCCEEEECTTSSE-----EEEECSSSCEEEEETTTT
T ss_pred eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCC-CeEEEEEecCCCe-----EEEEcCCCeEEEEECCCC
Confidence 99999987 88999999999999999998 4577777877765 6999999999998 799999999999999999
Q ss_pred eEEeeeeccC-------cCeeEEEEeeCCCEEeC
Q 024868 235 NKIGHKRLLR-------KPASVLSISLDGKYLAM 261 (261)
Q Consensus 235 ~~~~~~~~~~-------~~v~~~~~s~dg~~la~ 261 (261)
+.+..+..+. ..+.+++|+|+|++|++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 315 (380)
T 3iz6_a 282 HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFA 315 (380)
T ss_dssp EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEE
T ss_pred cEEEEecccccccccccCceEEEEECCCCCEEEE
Confidence 8876655432 24889999999999873
No 20
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.3e-36 Score=234.06 Aligned_cols=225 Identities=14% Similarity=0.150 Sum_probs=190.0
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
..+|.+++|+|+ ..++++|+.|+ .|..||..+++. ...+.+|...|.+++|+|++++|++++.
T Consensus 65 ~~~v~~~~~s~d---g~~l~s~s~D~--------~v~~wd~~~~~~------~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 127 (319)
T 3frx_A 65 SHIVQDCTLTAD---GAYALSASWDK--------TLRLWDVATGET------YQRFVGHKSDVMSVDIDKKASMIISGSR 127 (319)
T ss_dssp SSCEEEEEECTT---SSEEEEEETTS--------EEEEEETTTTEE------EEEEECCSSCEEEEEECTTSCEEEEEET
T ss_pred cccEEEEEECCC---CCEEEEEeCCC--------EEEEEECCCCCe------eEEEccCCCcEEEEEEcCCCCEEEEEeC
Confidence 568999999985 56899999999 999999988765 5678899999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC------CcEEEEeccCCeEEEEEccCceEEeeccccCCce
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD------GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV 157 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v 157 (261)
|++|++||+..... .....|...+.+++|+|. +..+++++.|+.|++||+++.+....+..|...|
T Consensus 128 D~~i~vwd~~~~~~--------~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v 199 (319)
T 3frx_A 128 DKTIKVWTIKGQCL--------ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI 199 (319)
T ss_dssp TSCEEEEETTSCEE--------EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCE
T ss_pred CCeEEEEECCCCeE--------EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcE
Confidence 99999999965432 222346678999999985 4489999999999999999988887888888899
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEE
Q 024868 158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI 237 (261)
Q Consensus 158 ~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~ 237 (261)
.+++|+|++++|++++.|+.|++||+.+++++..+..+ ..+.+++|+|++.+ ++++.. +.+++|++..+..+
T Consensus 200 ~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~-----la~~~~-~~i~v~~~~~~~~~ 271 (319)
T 3frx_A 200 NTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYW-----LAAATA-TGIKVFSLDPQYLV 271 (319)
T ss_dssp EEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC--SCEEEEEECSSSSE-----EEEEET-TEEEEEEETTEEEE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CcEEEEEEcCCCCE-----EEEEcC-CCcEEEEeCcCeee
Confidence 99999999999999999999999999999998888754 35999999999987 455544 45999999887665
Q ss_pred eeee--------ccCcCeeEEEEeeCCCEEeC
Q 024868 238 GHKR--------LLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 238 ~~~~--------~~~~~v~~~~~s~dg~~la~ 261 (261)
..+. .+...+.+++|+|||++|++
T Consensus 272 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s 303 (319)
T 3frx_A 272 DDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA 303 (319)
T ss_dssp EEECCCCTTCCGGGCCCEEEEEECTTSSEEEE
T ss_pred eccCccccccccCcCcceeEEEECCCCCEEEE
Confidence 4443 23457889999999999974
No 21
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=8.3e-37 Score=234.29 Aligned_cols=233 Identities=12% Similarity=0.095 Sum_probs=183.1
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC--CCeEEE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVC 80 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~ 80 (261)
...+|++++|+|+ ..++++|+.|+ .|..||..+... .....+.+|.+.|.+++|+|+ +++|++
T Consensus 8 h~~~V~~~~~s~~---g~~las~s~D~--------~v~iw~~~~~~~----~~~~~l~gH~~~V~~v~~s~~~~g~~l~s 72 (297)
T 2pm7_B 8 HNEMIHDAVMDYY---GKRMATCSSDK--------TIKIFEVEGETH----KLIDTLTGHEGPVWRVDWAHPKFGTILAS 72 (297)
T ss_dssp CSSCEEEEEECTT---SSEEEEEETTS--------CEEEEEBCSSCB----CCCEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred CcCceEEEEECCC---CCEEEEEeCCC--------EEEEEecCCCCc----EEEEEEccccCCeEEEEecCCCcCCEEEE
Confidence 3678999999985 56899999999 677777653211 113468899999999999864 899999
Q ss_pred EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC--CcEEEEeccCCeEEEEEccCceE--EeeccccCCc
Q 024868 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKS 156 (261)
Q Consensus 81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~ 156 (261)
++.|++|++||+.++..... .....|...|.+++|+|+ +.+|++++.|+.|++||++++.. ...+..|...
T Consensus 73 ~s~D~~v~iWd~~~~~~~~~-----~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~ 147 (297)
T 2pm7_B 73 CSYDGKVMIWKEENGRWSQI-----AVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 147 (297)
T ss_dssp EETTTEEEEEEBSSSCBCCC-----EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSC
T ss_pred EcCCCEEEEEEcCCCceEEE-----EEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCc
Confidence 99999999999987642110 111235678999999997 88999999999999999987532 2344566778
Q ss_pred eeEEEEcCC-------------CCEEEEecCCCcEEEEEccCCc----EEEEEeecCCCceEEEEEecCC---CcceEEE
Q 024868 157 VLDMDFSLD-------------SEFLATTSTDGSARIWKTEDGV----AWTFLTRNSDEKIELCRFSKDG---TKPFLFC 216 (261)
Q Consensus 157 v~~~~~s~~-------------~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~p~~---~~~~~~~ 216 (261)
|.+++|+|+ +++|++++.|+.|++||+++++ ....+..|.. .|.+++|+|++ ++
T Consensus 148 v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~~~~~~----- 221 (297)
T 2pm7_B 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSY----- 221 (297)
T ss_dssp EEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEE-----
T ss_pred cceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCCCCceE-----
Confidence 999999997 5799999999999999998876 5556666655 69999999996 44
Q ss_pred EEeeCCCcEEEEEECCCCe---EEeee--eccCcCeeEEEEeeCCCEEeC
Q 024868 217 TVQRGDKALLAVYDISTWN---KIGHK--RLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 217 ~~~~~~d~~i~~~d~~~~~---~~~~~--~~~~~~v~~~~~s~dg~~la~ 261 (261)
+++++.|++|++||+++.. ....+ ..+...+.+++|+|+|++||+
T Consensus 222 las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las 271 (297)
T 2pm7_B 222 MASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL 271 (297)
T ss_dssp EEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEE
T ss_pred EEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEE
Confidence 6899999999999998643 11122 356788999999999999874
No 22
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=6.9e-37 Score=238.99 Aligned_cols=242 Identities=10% Similarity=0.074 Sum_probs=183.7
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
...|.+++|+|+ +.++++++ ++.....+ ..++.|+....... ... ......|...|.+++|+|++ .|++++.
T Consensus 30 ~~~v~~~~fs~d---G~~l~~~s-d~~~r~Wd-~~~~~~~~~~~~~~-~~~-~~~~~~~~~~v~~~~~s~d~-~l~~~s~ 101 (344)
T 4gqb_B 30 ERQLEAARYRSD---GALLLGAS-SLSGRCWA-GSLWLFKDPCAAPN-EGF-CSAGVQTEAGVADLTWVGER-GILVASD 101 (344)
T ss_dssp CSEEEEEEECTT---SCEEEEEE-CCSSSCCC-EEEEEESSGGGTTC-GGG-CSEEEEESSCEEEEEEETTT-EEEEEET
T ss_pred cCCEEEEEECCC---CCEEEEEe-CCceEEee-ceeeeeccccccCC-cce-eeeeeccCCCEEEEEEeCCC-eEEEEEC
Confidence 357999999996 45676665 43222221 14455543221110 000 11222356789999999985 6889999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
||+|++||+.+++...... .....|.+.|.+++|+|+|++|++++.|++|++||+++++.+..+..|...|.+++|+
T Consensus 102 dg~v~lWd~~~~~~~~~~~---~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~ 178 (344)
T 4gqb_B 102 SGAVELWELDENETLIVSK---FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAAS 178 (344)
T ss_dssp TSEEEEEEECTTSSCEEEE---EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred CCEEEEEeccCCCceeEee---ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEec
Confidence 9999999999876532211 1223567899999999999999999999999999999999988888888999999999
Q ss_pred CCCC-EEEEecCCCcEEEEEccCCcEEEEEeec-CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868 164 LDSE-FLATTSTDGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (261)
Q Consensus 164 ~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~ 241 (261)
|++. +|++++.|+.|++||++++++...+..+ +...+.+++|+|++..+ +++++.|+.|++||+++++.+..+.
T Consensus 179 ~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----l~sg~~dg~v~~wd~~~~~~~~~~~ 254 (344)
T 4gqb_B 179 PHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEV----FVFGDENGTVSLVDTKSTSCVLSSA 254 (344)
T ss_dssp SSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTE----EEEEETTSEEEEEESCC--CCEEEE
T ss_pred CCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcc----eEEeccCCcEEEEECCCCcEEEEEc
Confidence 9885 7899999999999999999988877532 23358999999977652 5788999999999999999998899
Q ss_pred ccCcCeeEEEEeeCC-CEEe
Q 024868 242 LLRKPASVLSISLDG-KYLA 260 (261)
Q Consensus 242 ~~~~~v~~~~~s~dg-~~la 260 (261)
.|...|.+++|+|+| ++||
T Consensus 255 ~h~~~v~~v~fsp~g~~~la 274 (344)
T 4gqb_B 255 VHSQCVTGLVFSPHSVPFLA 274 (344)
T ss_dssp CCSSCEEEEEECSSSSCCEE
T ss_pred CCCCCEEEEEEccCCCeEEE
Confidence 999999999999998 4665
No 23
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.9e-36 Score=253.73 Aligned_cols=236 Identities=15% Similarity=0.242 Sum_probs=187.6
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
..+|.+++|+|+. ...+++|+.|+ .+..||....++ ...+.+|...|.+++|+|++++|++++.
T Consensus 147 ~~~v~~v~f~p~~--~~~l~s~s~D~--------~v~lwd~~~~~~------~~~l~~H~~~V~~v~fspdg~~las~s~ 210 (611)
T 1nr0_A 147 ARAMNSVDFKPSR--PFRIISGSDDN--------TVAIFEGPPFKF------KSTFGEHTKFVHSVRYNPDGSLFASTGG 210 (611)
T ss_dssp SSCEEEEEECSSS--SCEEEEEETTS--------CEEEEETTTBEE------EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCceEEEECCCC--CeEEEEEeCCC--------eEEEEECCCCeE------eeeeccccCceEEEEECCCCCEEEEEEC
Confidence 5689999999863 45799999999 788888766554 5578899999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee--------------
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-------------- 149 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~-------------- 149 (261)
|++|++||+.++.....+.........|.+.|.+++|+|++++|++++.|++|++||+++++....
T Consensus 211 D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~ 290 (611)
T 1nr0_A 211 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI 290 (611)
T ss_dssp TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEE
T ss_pred CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEE
Confidence 999999999877642221111112225778999999999999999999999999999987654322
Q ss_pred -----------------------------ccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee------
Q 024868 150 -----------------------------EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR------ 194 (261)
Q Consensus 150 -----------------------------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------ 194 (261)
...|...|.+++|+|+|++|++++.|+.|++||+.+++....+..
T Consensus 291 ~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v 370 (611)
T 1nr0_A 291 IWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMI 370 (611)
T ss_dssp EECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCE
T ss_pred EEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceE
Confidence 234666899999999999999999999999999987654332100
Q ss_pred ---------------------------------------------------------------------------cCCCc
Q 024868 195 ---------------------------------------------------------------------------NSDEK 199 (261)
Q Consensus 195 ---------------------------------------------------------------------------~~~~~ 199 (261)
.+...
T Consensus 371 ~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~ 450 (611)
T 1nr0_A 371 TGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYN 450 (611)
T ss_dssp EEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSC
T ss_pred EEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCC
Confidence 00123
Q ss_pred eEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE--EeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 200 v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+.+++|+|||++ +++++.|++|++||+.+++. +.. ..|...|.+++|+|||++||+
T Consensus 451 v~~va~spdg~~-----lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las 508 (611)
T 1nr0_A 451 SSCVALSNDKQF-----VAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVA 508 (611)
T ss_dssp EEEEEECTTSCE-----EEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEE
T ss_pred ceEEEEeCCCCE-----EEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEE
Confidence 678899999998 78999999999999987653 233 578899999999999999974
No 24
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-36 Score=234.37 Aligned_cols=232 Identities=14% Similarity=0.105 Sum_probs=175.3
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeee-cC-CCCCceEEEECCCCCeEEE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF-DE-SEGDPMTIAVNPSGDDFVC 80 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~ 80 (261)
..++|++++|+|+ ++++|+.|+ .|..||...... .....+ .. |...|.+++|+|++++|++
T Consensus 13 h~~~v~~~~~s~~-----~las~~~D~--------~i~lw~~~~~~~----~~~~~~~~~~h~~~v~~v~~sp~~~~las 75 (330)
T 2hes_X 13 YKEKIWSFDFSQG-----ILATGSTDR--------KIKLVSVKYDDF----TLIDVLDETAHKKAIRSVAWRPHTSLLAA 75 (330)
T ss_dssp CSSCEEEEEEETT-----EEEEEESSS--------CEEEEECSSSCC----EEEEEECTTCCCSCEEEEEECTTSSEEEE
T ss_pred CCCceeeeccCCC-----EEEEEcCCC--------EEEEEEecCCCe----EEEEEEecCCccCCEEEEEECCCCCEEEE
Confidence 3578999999873 899999999 777777765421 112233 34 9999999999999999999
Q ss_pred EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCc----eEEeeccccCCc
Q 024868 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL----RIILDEPKAHKS 156 (261)
Q Consensus 81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~----~~~~~~~~~~~~ 156 (261)
++.|++|++|++..................|...|.+++|+|++++|++++.|++|++||++.. +.+..+..|...
T Consensus 76 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~ 155 (330)
T 2hes_X 76 GSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD 155 (330)
T ss_dssp EETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC
T ss_pred EeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc
Confidence 9999999999986432100000001112346789999999999999999999999999999532 344556677789
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEEccCC--cEEEEEeecCCCceEEEEEecC--CCcceEEEEEeeCCCcEEEEEECC
Q 024868 157 VLDMDFSLDSEFLATTSTDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKD--GTKPFLFCTVQRGDKALLAVYDIS 232 (261)
Q Consensus 157 v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~p~--~~~~~~~~~~~~~~d~~i~~~d~~ 232 (261)
|.+++|+|++++|++++.|+.|++||..++ +++..+..|.. .|.+++|+|+ +.. +++++.|++|++||++
T Consensus 156 v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~-----l~s~s~D~~v~iw~~~ 229 (330)
T 2hes_X 156 VKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG-TVWSSDFDKTEGVFR-----LCSGSDDSTVRVWKYM 229 (330)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECCSSSSCE-----EEEEETTSCEEEEEEE
T ss_pred eEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCC-cEEEEEecCCCCeeE-----EEEEeCCCeEEEEEec
Confidence 999999999999999999999999999876 56777777765 6999999999 444 6889999999999987
Q ss_pred CC--------eEEeeeec-cCcCeeEEEEeeCCC
Q 024868 233 TW--------NKIGHKRL-LRKPASVLSISLDGK 257 (261)
Q Consensus 233 ~~--------~~~~~~~~-~~~~v~~~~~s~dg~ 257 (261)
++ .....+.. |...|.+++|++++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~ 263 (330)
T 2hes_X 230 GDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGL 263 (330)
T ss_dssp EECTTSCEEEEEEEECCSCCSSCEEEEEECTTSC
T ss_pred CCCccccceeEEeeecccccccceEEEEEcCCCE
Confidence 54 23333333 778999999997764
No 25
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.4e-36 Score=253.09 Aligned_cols=230 Identities=17% Similarity=0.208 Sum_probs=190.5
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
...+|++++|+|+ ..++|+|+.++ .|..||..+... .....+.+|.+.|.+++|+|++++|++++
T Consensus 58 h~~~v~~~~~spd---g~~lasg~~d~--------~v~lWd~~~~~~----~~~~~~~~~~~~v~~v~fs~dg~~l~~~~ 122 (611)
T 1nr0_A 58 HSHQTTVAKTSPS---GYYCASGDVHG--------NVRIWDTTQTTH----ILKTTIPVFSGPVKDISWDSESKRIAAVG 122 (611)
T ss_dssp CSSCEEEEEECTT---SSEEEEEETTS--------EEEEEESSSTTC----CEEEEEECSSSCEEEEEECTTSCEEEEEE
T ss_pred CCCceEEEEECCC---CcEEEEEeCCC--------CEEEeECCCCcc----eeeEeecccCCceEEEEECCCCCEEEEEE
Confidence 3578999999996 67999999999 888888754321 22456788999999999999999999887
Q ss_pred cC----CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCc-EEEEeccCCeEEEEEccCceEEeeccccCCce
Q 024868 83 TN----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV 157 (261)
Q Consensus 83 ~d----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v 157 (261)
.+ +.|++||. +... .....|...|.+++|+|++. .|++++.|++|++||..+++....+..|...|
T Consensus 123 ~~~~~~~~v~~wd~--~~~~-------~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V 193 (611)
T 1nr0_A 123 EGRERFGHVFLFDT--GTSN-------GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV 193 (611)
T ss_dssp CCSSCSEEEEETTT--CCBC-------BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCE
T ss_pred CCCCceeEEEEeeC--CCCc-------ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCce
Confidence 65 46888874 3221 12234678999999999987 59999999999999999888877788888899
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee------cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEEC
Q 024868 158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR------NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231 (261)
Q Consensus 158 ~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~ 231 (261)
.+++|+|+|++|++++.|+.|++||+.+++++..+.. .+...|.+++|+|+|++ +++++.|++|++||+
T Consensus 194 ~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~-----l~s~s~D~~v~lWd~ 268 (611)
T 1nr0_A 194 HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK-----IASASADKTIKIWNV 268 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE-----EEEEETTSEEEEEET
T ss_pred EEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCE-----EEEEeCCCeEEEEeC
Confidence 9999999999999999999999999999999888742 23447999999999998 789999999999999
Q ss_pred CCCeEEeee-------------------------------------------eccCcCeeEEEEeeCCCEEeC
Q 024868 232 STWNKIGHK-------------------------------------------RLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 232 ~~~~~~~~~-------------------------------------------~~~~~~v~~~~~s~dg~~la~ 261 (261)
++++.+..+ ..|...|.+++|+|||++|++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s 341 (611)
T 1nr0_A 269 ATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFS 341 (611)
T ss_dssp TTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEE
Confidence 987654332 356778999999999999874
No 26
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.2e-36 Score=235.07 Aligned_cols=233 Identities=12% Similarity=0.091 Sum_probs=184.7
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
..+|.+++|+|+ ..++++|+.|+ .+..|+...... .....+.+|...|.+++|+|++++|++++.
T Consensus 61 ~~~v~~~~~sp~---g~~l~s~s~D~--------~v~iw~~~~~~~----~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~ 125 (345)
T 3fm0_A 61 QRTVRKVAWSPC---GNYLASASFDA--------TTCIWKKNQDDF----ECVTTLEGHENEVKSVAWAPSGNLLATCSR 125 (345)
T ss_dssp SSCEEEEEECTT---SSEEEEEETTS--------CEEEEEECCC-E----EEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCcEEEEEECCC---CCEEEEEECCC--------cEEEEEccCCCe----EEEEEccCCCCCceEEEEeCCCCEEEEEEC
Confidence 578999999995 56899999998 666666554432 224568899999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE--EeeccccCCceeEEE
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKSVLDMD 161 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~v~~~~ 161 (261)
|++|++||+......... .....|...|.+++|+|++++|++++.|+.|++||.++++. ...+..|...|.+++
T Consensus 126 D~~v~iwd~~~~~~~~~~----~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~ 201 (345)
T 3fm0_A 126 DKSVWVWEVDEEDEYECV----SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 201 (345)
T ss_dssp TSCEEEEEECTTSCEEEE----EEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred CCeEEEEECCCCCCeEEE----EEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEE
Confidence 999999999876431111 11224567899999999999999999999999999987753 345667778999999
Q ss_pred EcCCCCEEEEecCCCcEEEEEccCC---------------cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEE
Q 024868 162 FSLDSEFLATTSTDGSARIWKTEDG---------------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALL 226 (261)
Q Consensus 162 ~s~~~~~l~~~~~d~~i~iwd~~~~---------------~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i 226 (261)
|+|+|++|++++.|+.|++||.... +++..+...+...|.+++|+|++.. +++++.|+.|
T Consensus 202 ~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-----l~s~~~d~~i 276 (345)
T 3fm0_A 202 FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGA-----LATACGDDAI 276 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCC-----EEEEETTSCE
T ss_pred ECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCE-----EEEEeCCCeE
Confidence 9999999999999999999997432 2344455544557999999999998 6889999999
Q ss_pred EEEECCCCeE---------EeeeeccCcCeeEEEEeeCCC-EEe
Q 024868 227 AVYDISTWNK---------IGHKRLLRKPASVLSISLDGK-YLA 260 (261)
Q Consensus 227 ~~~d~~~~~~---------~~~~~~~~~~v~~~~~s~dg~-~la 260 (261)
++|+...+.. ......|...|.+++|+|++. +||
T Consensus 277 ~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~la 320 (345)
T 3fm0_A 277 RVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLA 320 (345)
T ss_dssp EEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEE
T ss_pred EEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEE
Confidence 9999875421 112246788999999999984 776
No 27
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.2e-36 Score=236.93 Aligned_cols=233 Identities=14% Similarity=0.209 Sum_probs=196.5
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
...+|++++|+|+ ..++++|+.++ .+..||..+..+ .....+.+|...|.+++|+|++++|++++
T Consensus 7 ~~~~i~~~~~s~~---~~~l~~~~~d~--------~v~i~~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 71 (372)
T 1k8k_C 7 LVEPISCHAWNKD---RTQIAICPNNH--------EVHIYEKSGNKW----VQVHELKEHNGQVTGVDWAPDSNRIVTCG 71 (372)
T ss_dssp CSSCCCEEEECTT---SSEEEEECSSS--------EEEEEEEETTEE----EEEEEEECCSSCEEEEEEETTTTEEEEEE
T ss_pred cCCCeEEEEECCC---CCEEEEEeCCC--------EEEEEeCCCCcE----EeeeeecCCCCcccEEEEeCCCCEEEEEc
Confidence 4679999999985 56889998888 888888776642 12556788999999999999999999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE---Eee-ccccCCcee
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI---ILD-EPKAHKSVL 158 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~---~~~-~~~~~~~v~ 158 (261)
.||.|++||+.+++.... .....+...+.+++|+|++++|++++.|+.|++||++.++. ... ...|...|.
T Consensus 72 ~dg~i~vwd~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~ 146 (372)
T 1k8k_C 72 TDRNAYVWTLKGRTWKPT-----LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL 146 (372)
T ss_dssp TTSCEEEEEEETTEEEEE-----EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred CCCeEEEEECCCCeeeee-----EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCee
Confidence 999999999987753111 22234567899999999999999999999999999987652 222 244567899
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEEc------------------cCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEee
Q 024868 159 DMDFSLDSEFLATTSTDGSARIWKT------------------EDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (261)
Q Consensus 159 ~~~~s~~~~~l~~~~~d~~i~iwd~------------------~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~ 220 (261)
+++|+|++++|++++.|+.|++||+ ..++++..+..+.. .+.+++|+|++++ ++++
T Consensus 147 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~-----l~~~ 220 (372)
T 1k8k_C 147 SLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSR-----VAWV 220 (372)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSE-----EEEE
T ss_pred EEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEECCCCCE-----EEEE
Confidence 9999999999999999999999995 36788888876655 6999999999997 6888
Q ss_pred CCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 221 ~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+.|+.|++||+++++.+..+..+..++.+++|+|++++|++
T Consensus 221 ~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 261 (372)
T 1k8k_C 221 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAA 261 (372)
T ss_dssp ETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEE
T ss_pred eCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEE
Confidence 99999999999999998888889899999999999998863
No 28
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-36 Score=233.52 Aligned_cols=239 Identities=13% Similarity=0.133 Sum_probs=176.5
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCcee-cCCeEEeeecCCCCCceEEEECCCCCeEEEE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY-TSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 81 (261)
...+|++++|+|+ ..++++|+.|+ .|..||....... ........+.+|...|.+++|+|++++|+++
T Consensus 57 h~~~v~~v~~sp~---~~~las~s~D~--------~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~ 125 (330)
T 2hes_X 57 HKKAIRSVAWRPH---TSLLAAGSFDS--------TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATC 125 (330)
T ss_dssp CCSCEEEEEECTT---SSEEEEEETTS--------CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEE
T ss_pred ccCCEEEEEECCC---CCEEEEEeCCC--------cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEE
Confidence 3568999999996 56899999999 6777776432110 1122345688999999999999999999999
Q ss_pred ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCc--eEEeeccccCCceeE
Q 024868 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL--RIILDEPKAHKSVLD 159 (261)
Q Consensus 82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~v~~ 159 (261)
+.|++|++||+.......... .....|...|.+++|+|++++|++++.|++|++||..++ +.+..+..|...|.+
T Consensus 126 s~D~~v~iwd~~~~~~~~~~~---~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~ 202 (330)
T 2hes_X 126 SRDKSVWIWETDESGEEYECI---SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWS 202 (330)
T ss_dssp ETTSCEEEEECCTTCCCCEEE---EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEE
T ss_pred eCCCEEEEEeccCCCCCeEEE---EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEE
Confidence 999999999995432111111 112245678999999999999999999999999998766 455666778889999
Q ss_pred EEEcCC--CCEEEEecCCCcEEEEEccCC--------cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEE
Q 024868 160 MDFSLD--SEFLATTSTDGSARIWKTEDG--------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY 229 (261)
Q Consensus 160 ~~~s~~--~~~l~~~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~ 229 (261)
++|+|+ +.+|++++.|+.|++||++++ .+...+...+...|.+++|++++ . +++++.||.|++|
T Consensus 203 ~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~-----l~s~~~dg~v~iw 276 (330)
T 2hes_X 203 SDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-L-----IASVGADGVLAVY 276 (330)
T ss_dssp EEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-C-----EEEEETTSCEEEE
T ss_pred EEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-E-----EEEEeCCCEEEEE
Confidence 999998 678999999999999999754 33444444344579999999776 4 5889999999999
Q ss_pred ECCCCe--EEee-eeccCc-CeeEEEEee--CCCEEeC
Q 024868 230 DISTWN--KIGH-KRLLRK-PASVLSISL--DGKYLAM 261 (261)
Q Consensus 230 d~~~~~--~~~~-~~~~~~-~v~~~~~s~--dg~~la~ 261 (261)
|..+++ .... ...|.. .+.+++|+| ++++||+
T Consensus 277 ~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las 314 (330)
T 2hes_X 277 EEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILAT 314 (330)
T ss_dssp EEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEE
T ss_pred EcCCCceEEEeccccccccceEEEEEEecCCCceEEEE
Confidence 998774 2322 245665 899999999 7888863
No 29
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=6.5e-37 Score=240.60 Aligned_cols=242 Identities=13% Similarity=0.137 Sum_probs=184.1
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
...|++++|+|+ ..++++|+.+.. ...+ ..++.|+..+...... ......+|...|.+++|+|++. +++++.
T Consensus 42 ~~~V~~v~fSpD---G~~las~s~d~~-~~wd-~~v~~~~~~~~~~~~~--~~~~~~~~~~~V~~~~~s~d~~-~l~~s~ 113 (357)
T 4g56_B 42 EVQIGAVRYRRD---GALLLAASSLSS-RTWG-GSIWVFKDPEGAPNES--LCTAGVQTEAGVTDVAWVSEKG-ILVASD 113 (357)
T ss_dssp CSEEEEEEECSS---SCEEEEEECSSS-SSCC-EEEEEESSCC---CGG--GCSEEEECSSCEEEEEEETTTE-EEEEET
T ss_pred cCCEEEEEECCC---CCEEEEEcCCCC-cccc-CeEEEEECCCCCccee--EecccCCCCCCEEEEEEcCCCC-EEEEEC
Confidence 567999999996 568888876321 1101 1788888765542111 1223456888999999999986 556778
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
||+|++||+.+++...... .....|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|...|.+++|+
T Consensus 114 dg~v~lWd~~~~~~~~~~~---~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s 190 (357)
T 4g56_B 114 SGAVELWEILEKESLLVNK---FAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAAC 190 (357)
T ss_dssp TSCEEEC--------CCCC---EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred CCEEEEeeccccceeEEEe---eccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 9999999998775422111 1223467899999999999999999999999999999999888888888899999999
Q ss_pred CCCC-EEEEecCCCcEEEEEccCCcEEEEEee-cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868 164 LDSE-FLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (261)
Q Consensus 164 ~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~ 241 (261)
|++. ++++++.|+.|++||++++++...+.. .....+.+++|+|++..+ +++++.|+.|++||+++++.+..+.
T Consensus 191 ~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~----la~g~~d~~i~~wd~~~~~~~~~~~ 266 (357)
T 4g56_B 191 PGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDT----FACGDETGNVSLVNIKNPDSAQTSA 266 (357)
T ss_dssp TTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTE----EEEEESSSCEEEEESSCGGGCEEEC
T ss_pred cCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccce----EEEeecccceeEEECCCCcEeEEEe
Confidence 9875 789999999999999999887765543 233469999999987652 5788899999999999999888888
Q ss_pred ccCcCeeEEEEeeCC-CEEe
Q 024868 242 LLRKPASVLSISLDG-KYLA 260 (261)
Q Consensus 242 ~~~~~v~~~~~s~dg-~~la 260 (261)
.+...|.+++|+|++ ++||
T Consensus 267 ~~~~~v~~l~~sp~~~~~la 286 (357)
T 4g56_B 267 VHSQNITGLAYSYHSSPFLA 286 (357)
T ss_dssp CCSSCEEEEEECSSSSCCEE
T ss_pred ccceeEEEEEEcCCCCCEEE
Confidence 999999999999997 4665
No 30
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.5e-35 Score=231.83 Aligned_cols=234 Identities=11% Similarity=0.116 Sum_probs=182.8
Q ss_pred CceeeEEEEEeeC---CcceEEEEecCCCCCCCCCceEEEEEcCCCCcee-cCCeEEeeecCCCCCceEEEECCCCCeEE
Q 024868 4 GGTVTCGSWIKRP---ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY-TSPLVTYVFDESEGDPMTIAVNPSGDDFV 79 (261)
Q Consensus 4 ~~~v~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 79 (261)
..+|++++|.+.+ .+..++++|+.|+ .|..||....... ........+.+|...|.+++|+|++.+++
T Consensus 21 ~~~V~~~~~~~s~~~~~d~~~l~sgs~D~--------~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 92 (343)
T 2xzm_R 21 SDWVTSIVAGFSQKENEDSPVLISGSRDK--------TVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI 92 (343)
T ss_dssp SSCEEEEEECCCSSTTCCCCEEEEEETTS--------CEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred hhhhhheeeEEEeecCCCCCEEEEEcCCC--------EEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence 5789999993221 1367899999999 6666665443211 01223456889999999999999999999
Q ss_pred EEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecc---ccCCc
Q 024868 80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP---KAHKS 156 (261)
Q Consensus 80 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---~~~~~ 156 (261)
+++.|++|++||+.++..... ...|...|.+++|+|++++|++++.|++|++||+..... .... .|...
T Consensus 93 s~s~D~~v~lwd~~~~~~~~~-------~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~ 164 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTYKR-------FVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK-FSSAEKENHSDW 164 (343)
T ss_dssp EEETTSEEEEEETTSSCEEEE-------EECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE-EECCTTTSCSSC
T ss_pred EEcCCCcEEEEECCCCcEEEE-------EcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce-eeeecccCCCce
Confidence 999999999999988764211 224678999999999999999999999999999974433 2222 45568
Q ss_pred eeEEEEcCCC----------CEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEE
Q 024868 157 VLDMDFSLDS----------EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALL 226 (261)
Q Consensus 157 v~~~~~s~~~----------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i 226 (261)
|.+++|+|++ .++++++.|+.|++|| .+++....+..|.. .|.+++|+|+|++ +++++.|+.|
T Consensus 165 v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~-~v~~~~~s~~g~~-----l~sgs~dg~v 237 (343)
T 2xzm_R 165 VSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHES-NVNHLSISPNGKY-----IATGGKDKKL 237 (343)
T ss_dssp EEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSS-CEEEEEECTTSSE-----EEEEETTCEE
T ss_pred eeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccc-cceEEEECCCCCE-----EEEEcCCCeE
Confidence 9999999987 7899999999999999 45666677776655 6999999999998 7899999999
Q ss_pred EEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 227 AVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 227 ~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
++||+...........+...+.+++|+|++++|+
T Consensus 238 ~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la 271 (343)
T 2xzm_R 238 LIWDILNLTYPQREFDAGSTINQIAFNPKLQWVA 271 (343)
T ss_dssp EEEESSCCSSCSEEEECSSCEEEEEECSSSCEEE
T ss_pred EEEECCCCcccceeecCCCcEEEEEECCCCCEEE
Confidence 9999954332222233556799999999999886
No 31
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=9.6e-36 Score=232.85 Aligned_cols=227 Identities=15% Similarity=0.190 Sum_probs=181.6
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
..+|.+++|+|+ ..++++|+.|+ .+..||..+... ...+.+|...|.+++|+|++++|++++.
T Consensus 76 ~~~V~~~~~~~~---~~~l~s~s~D~--------~v~lwd~~~~~~------~~~~~~h~~~v~~v~~sp~~~~l~s~~~ 138 (343)
T 2xzm_R 76 NHFVSDLALSQE---NCFAISSSWDK--------TLRLWDLRTGTT------YKRFVGHQSEVYSVAFSPDNRQILSAGA 138 (343)
T ss_dssp SSCEEEEEECSS---TTEEEEEETTS--------EEEEEETTSSCE------EEEEECCCSCEEEEEECSSTTEEEEEET
T ss_pred CCceEEEEECCC---CCEEEEEcCCC--------cEEEEECCCCcE------EEEEcCCCCcEEEEEECCCCCEEEEEcC
Confidence 468999999985 56899999999 899999887664 5568899999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC----------cEEEEeccCCeEEEEEccCceEEeecccc
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG----------SRFAAGGVDGHLRIMHWPSLRIILDEPKA 153 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----------~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 153 (261)
|++|++||+..... . .......+...+.+++|+|++ .+|++++.|+.|++||. +.+....+..|
T Consensus 139 d~~i~~wd~~~~~~-~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h 212 (343)
T 2xzm_R 139 EREIKLWNILGECK-F----SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAH 212 (343)
T ss_dssp TSCEEEEESSSCEE-E----ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECC
T ss_pred CCEEEEEeccCCce-e----eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCc
Confidence 99999999974321 0 111222456789999999987 68999999999999994 45555666778
Q ss_pred CCceeEEEEcCCCCEEEEecCCCcEEEEEccC-CcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (261)
Q Consensus 154 ~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~ 232 (261)
...|.+++|+|+|++|++++.|+.|++||+.+ ..+...+. + ...|.+++|+|++++ ++++.|+.|++||+.
T Consensus 213 ~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~-~~~v~~v~~sp~~~~------la~~~d~~v~iw~~~ 284 (343)
T 2xzm_R 213 ESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-A-GSTINQIAFNPKLQW------VAVGTDQGVKIFNLM 284 (343)
T ss_dssp SSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-C-SSCEEEEEECSSSCE------EEEEESSCEEEEESS
T ss_pred cccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-C-CCcEEEEEECCCCCE------EEEECCCCEEEEEeC
Confidence 88999999999999999999999999999954 44444443 2 235999999999986 334567789999998
Q ss_pred CCeEEe--eee-----------ccCcCeeEEEEeeCCCEEeC
Q 024868 233 TWNKIG--HKR-----------LLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 233 ~~~~~~--~~~-----------~~~~~v~~~~~s~dg~~la~ 261 (261)
+++... .+. .|...+.+++|+|+|++||+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s 326 (343)
T 2xzm_R 285 TQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFA 326 (343)
T ss_dssp SCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEE
T ss_pred CCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEE
Confidence 766432 222 45677999999999999874
No 32
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.4e-36 Score=248.53 Aligned_cols=223 Identities=15% Similarity=0.210 Sum_probs=191.5
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
..+|++++|+|+ ..++++|+.++ .+..||..... ...+.+|...|.+++|+|++++|++++.
T Consensus 344 ~~~v~~~~~s~~---g~~l~~~~~dg--------~v~~~~~~~~~-------~~~~~~~~~~v~~~~~s~dg~~l~~~~~ 405 (577)
T 2ymu_A 344 SSSVWGVAFSPD---GQTIASASDDK--------TVKLWNRNGQL-------LQTLTGHSSSVRGVAFSPDGQTIASASD 405 (577)
T ss_dssp SSCEEEEEECTT---SSEEEEEETTS--------EEEEEETTCCE-------EEEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred CCCEEEEEECCC---CCEEEEEeCCC--------EEEEEcCCCCE-------EEEecCCCCCeEEEEECCCCCEEEEEeC
Confidence 568999999986 56889999998 88888864432 4567889999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
|+.|++||...... .....|...|.+++|+||+++|++++.|+.|++||. +++.+..+..|...|.+++|+
T Consensus 406 d~~v~~~~~~~~~~--------~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s 476 (577)
T 2ymu_A 406 DKTVKLWNRNGQLL--------QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFS 476 (577)
T ss_dssp TSEEEEECTTCCEE--------EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEEC
T ss_pred CCEEEEEeCCCCEE--------EEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEc
Confidence 99999999543211 112245678999999999999999999999999996 556666777788899999999
Q ss_pred CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc
Q 024868 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL 243 (261)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~ 243 (261)
|++++|++++.|+.|++||. +++++..+..|.. .|++++|+|+|++ +++++.|+.|++||. +++.+..+..|
T Consensus 477 pd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~-~v~~l~~s~dg~~-----l~s~~~dg~v~lwd~-~~~~~~~~~~h 548 (577)
T 2ymu_A 477 PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-SVRGVAFSPDGQT-----IASASDDKTVKLWNR-NGQLLQTLTGH 548 (577)
T ss_dssp TTSCEEEEEETTSEEEEEET-TSCEEEEEECCSS-CEEEEEECTTSSC-----EEEEETTSEEEEECT-TSCEEEEEECC
T ss_pred CCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCC-CEEEEEEcCCCCE-----EEEEECcCEEEEEeC-CCCEEEEEcCC
Confidence 99999999999999999995 6888888887765 6999999999998 689999999999996 57888888999
Q ss_pred CcCeeEEEEeeCCCEEeC
Q 024868 244 RKPASVLSISLDGKYLAM 261 (261)
Q Consensus 244 ~~~v~~~~~s~dg~~la~ 261 (261)
...|.+++|+|||++|++
T Consensus 549 ~~~v~~~~fs~dg~~l~s 566 (577)
T 2ymu_A 549 SSSVWGVAFSPDGQTIAS 566 (577)
T ss_dssp SSCEEEEEECTTSSCEEE
T ss_pred CCCEEEEEEcCCCCEEEE
Confidence 999999999999999874
No 33
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.1e-36 Score=234.05 Aligned_cols=233 Identities=11% Similarity=0.106 Sum_probs=183.4
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC--CCCeEEE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVC 80 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~ 80 (261)
...+|++++|+|+ ..++++|+.|+ .+..||..+... .....+.+|.+.|.+++|+| ++++|++
T Consensus 12 H~~~V~~v~~s~~---g~~lasgs~D~--------~v~lwd~~~~~~----~~~~~l~gH~~~V~~v~~~~~~~~~~l~s 76 (316)
T 3bg1_A 12 HEDMIHDAQMDYY---GTRLATCSSDR--------SVKIFDVRNGGQ----ILIADLRGHEGPVWQVAWAHPMYGNILAS 76 (316)
T ss_dssp --CCEEEEEECGG---GCEEEEEETTT--------EEEEEEEETTEE----EEEEEEECCSSCEEEEEECCGGGSSCEEE
T ss_pred ccCeEEEeeEcCC---CCEEEEEeCCC--------eEEEEEecCCCc----EEEEEEcCCCccEEEEEeCCCCCCCEEEE
Confidence 3578999999985 66899999999 888888765431 12456889999999999986 4899999
Q ss_pred EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC--CcEEEEeccCCeEEEEEccCceE---EeeccccCC
Q 024868 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRI---ILDEPKAHK 155 (261)
Q Consensus 81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~ 155 (261)
++.|++|++||+.++..... .....|...|.+++|+|+ +.+|++++.|+.|++||++.+.. ......|..
T Consensus 77 ~s~D~~v~iWd~~~~~~~~~-----~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~ 151 (316)
T 3bg1_A 77 CSYDRKVIIWREENGTWEKS-----HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTI 151 (316)
T ss_dssp EETTSCEEEECCSSSCCCEE-----EEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS
T ss_pred EECCCEEEEEECCCCcceEE-----EEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccC
Confidence 99999999999987542110 112245678999999997 78999999999999999987532 233445666
Q ss_pred ceeEEEEcCC-----------------CCEEEEecCCCcEEEEEccCC---cEEEEEeecCCCceEEEEEecCC----Cc
Q 024868 156 SVLDMDFSLD-----------------SEFLATTSTDGSARIWKTEDG---VAWTFLTRNSDEKIELCRFSKDG----TK 211 (261)
Q Consensus 156 ~v~~~~~s~~-----------------~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~p~~----~~ 211 (261)
.+.+++|+|+ +++|++++.|+.|++||++.+ +++..+..|.. .|++++|+|++ ++
T Consensus 152 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~sp~~~~~~~~ 230 (316)
T 3bg1_A 152 GCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAWAPSIGLPTST 230 (316)
T ss_dssp CBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS-CEEEEECCCCSSCSCCE
T ss_pred CcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC-ceEEEEecCCCCCCCce
Confidence 8999999997 478999999999999999755 35566666655 69999999987 55
Q ss_pred ceEEEEEeeCCCcEEEEEECCCC---e-EEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 212 PFLFCTVQRGDKALLAVYDISTW---N-KIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 212 ~~~~~~~~~~~d~~i~~~d~~~~---~-~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+++++.|++|++||+++. + ....+..+...|.+++|+|+|++||+
T Consensus 231 -----las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las 279 (316)
T 3bg1_A 231 -----IASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAV 279 (316)
T ss_dssp -----EEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEE
T ss_pred -----EEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEE
Confidence 689999999999999762 1 12234567889999999999999874
No 34
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.2e-35 Score=233.93 Aligned_cols=227 Identities=14% Similarity=0.202 Sum_probs=179.9
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecC------------------CCC
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE------------------SEG 64 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------------------~~~ 64 (261)
..++|+|++|+|+ ..++++|+ ++ .+..|+..++.. ...+.. +..
T Consensus 63 h~~~V~~v~fspd---g~~la~g~-~~--------~v~i~~~~~g~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~ 124 (393)
T 1erj_A 63 HTSVVCCVKFSND---GEYLATGC-NK--------TTQVYRVSDGSL------VARLSDDSAANKDPENLNTSSSPSSDL 124 (393)
T ss_dssp CSSCCCEEEECTT---SSEEEEEC-BS--------CEEEEETTTCCE------EEEECC-----------------CCCC
T ss_pred CCCEEEEEEECCC---CCEEEEEc-CC--------cEEEEEecCCCE------EEEecCccccccccccccccccCCCce
Confidence 4578999999996 45778775 44 456666655543 112222 233
Q ss_pred CceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCc
Q 024868 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL 144 (261)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 144 (261)
.|.+++|+|++++|++++.|+.|++||+.+++... ....|...|.+++|+|++++|++++.|++|++||++++
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~-------~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~ 197 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM-------ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG 197 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE-------EEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC
Confidence 58999999999999999999999999998765411 12245678999999999999999999999999999998
Q ss_pred eEEeeccccCCceeEEEEcC-CCCEEEEecCCCcEEEEEccCCcEEEEEe-------ecCCCceEEEEEecCCCcceEEE
Q 024868 145 RIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLT-------RNSDEKIELCRFSKDGTKPFLFC 216 (261)
Q Consensus 145 ~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~v~~~~~~p~~~~~~~~~ 216 (261)
+....+ .++..+.+++|+| ++++|++++.|+.|++||+++++.+..+. .| ...|.+++|+|+|++
T Consensus 198 ~~~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~~~g~~----- 270 (393)
T 1erj_A 198 QCSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH-KDSVYSVVFTRDGQS----- 270 (393)
T ss_dssp EEEEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCC-SSCEEEEEECTTSSE-----
T ss_pred eeEEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCC-CCCEEEEEECCCCCE-----
Confidence 875443 4566899999999 89999999999999999999998877763 33 346999999999998
Q ss_pred EEeeCCCcEEEEEECCCCe------------EEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 217 TVQRGDKALLAVYDISTWN------------KIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 217 ~~~~~~d~~i~~~d~~~~~------------~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+++++.|+.|++||+++.. ....+..|...|.+++|+|++++|++
T Consensus 271 l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 327 (393)
T 1erj_A 271 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS 327 (393)
T ss_dssp EEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEE
T ss_pred EEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEE
Confidence 6899999999999997632 33456678889999999999999873
No 35
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.7e-36 Score=237.72 Aligned_cols=240 Identities=17% Similarity=0.170 Sum_probs=190.4
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCcee-cCCeEEeeecCCCCCceEEEECCC-CCeEEEE
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY-TSPLVTYVFDESEGDPMTIAVNPS-GDDFVCS 81 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~ 81 (261)
..+|.+++|+|+ ..++++|+.++ .+..|+....... ........+.+|.+.+.++.|+|+ +..|+++
T Consensus 108 ~~~v~~~~~s~~---g~~las~~~d~--------~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~ 176 (380)
T 3iz6_a 108 CPWVMECAFAPN---GQSVACGGLDS--------ACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITG 176 (380)
T ss_dssp CTTCCCCEECTT---SSEEEECCSSS--------CCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEE
T ss_pred CCCEEEEEECCC---CCEEEEeeCCC--------cEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEE
Confidence 356888999985 66899999988 5555555432110 011113457899999999999996 4579999
Q ss_pred ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccC-ceEEeeccccCCceeE
Q 024868 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPS-LRIILDEPKAHKSVLD 159 (261)
Q Consensus 82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~v~~ 159 (261)
+.|++|++||+.++....... ......|...|.++.|+| ++++|++|+.|++|++||++. .+.+..+..|...|.+
T Consensus 177 s~D~~i~~wd~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~ 254 (380)
T 3iz6_a 177 SGDQTCVLWDVTTGQRISIFG--SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINS 254 (380)
T ss_dssp CTTSCEEEECTTTCCEEEEEC--CCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCE
T ss_pred CCCCcEEEEEcCCCcEEEEee--cccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEE
Confidence 999999999998876422111 111234668899999987 889999999999999999974 4555566778889999
Q ss_pred EEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC------CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868 160 MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (261)
Q Consensus 160 ~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~ 233 (261)
++|+|++++|++++.|+.|++||+++++++..+..+.. ..+.+++|+|+|++ +++++.||.|++||+.+
T Consensus 255 v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-----l~~g~~dg~i~vwd~~~ 329 (380)
T 3iz6_a 255 VKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRL-----LFAGYSNGDCYVWDTLL 329 (380)
T ss_dssp EEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSE-----EEEECTTSCEEEEETTT
T ss_pred EEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCE-----EEEEECCCCEEEEECCC
Confidence 99999999999999999999999999998887764332 13889999999998 68899999999999998
Q ss_pred CeEEeee----eccCcCeeEEEEeeCCCEEeC
Q 024868 234 WNKIGHK----RLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 234 ~~~~~~~----~~~~~~v~~~~~s~dg~~la~ 261 (261)
++.+..+ ..|...|.+++|+|||++||+
T Consensus 330 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 361 (380)
T 3iz6_a 330 AEMVLNLGTLQNSHEGRISCLGLSSDGSALCT 361 (380)
T ss_dssp CCEEEEECCSCSSCCCCCCEEEECSSSSEEEE
T ss_pred CceEEEEecccCCCCCceEEEEECCCCCEEEE
Confidence 8877655 468889999999999999974
No 36
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.9e-34 Score=224.77 Aligned_cols=239 Identities=13% Similarity=0.177 Sum_probs=191.1
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
.++|+|++|+|+ ...++++|+.|+ .|..||...... ........+.+|...|.+++|+|++++|++++.
T Consensus 38 ~~~V~~v~~sp~--~~~~l~S~s~D~--------~i~vWd~~~~~~-~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~ 106 (340)
T 4aow_A 38 NGWVTQIATTPQ--FPDMILSASRDK--------TIIMWKLTRDET-NYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 106 (340)
T ss_dssp SSCEEEEEECTT--CTTEEEEEETTS--------CEEEEEECCSSS-CSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred cCCEEEEEEeCC--CCCEEEEEcCCC--------eEEEEECCCCCc-ccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence 689999999986 256999999999 666666554332 112335578899999999999999999999999
Q ss_pred CCcEEEEEEeCCccccce------------------------------------eeeeCCCCCCCCCeEEEEEeeCC--c
Q 024868 84 NGGCKLFEVYGGATDINL------------------------------------LAKKMPPLQDAGPQKCLSFSVDG--S 125 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~v~~~~~s~~~--~ 125 (261)
|+.|++|+.......... .........+...+..++|++++ .
T Consensus 107 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 186 (340)
T 4aow_A 107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP 186 (340)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSC
T ss_pred cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCc
Confidence 999999998765431100 00011223345788999998864 5
Q ss_pred EEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEE
Q 024868 126 RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF 205 (261)
Q Consensus 126 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 205 (261)
++++++.|+.|++||+++++....+..|...|.+++|+|++++|++++.|+.|++||+++++++..+..+ ..+.+++|
T Consensus 187 ~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~ 264 (340)
T 4aow_A 187 IIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCF 264 (340)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS--SCEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC--ceEEeeec
Confidence 7888999999999999999988888888889999999999999999999999999999999998888754 35999999
Q ss_pred ecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee---------ccCcCeeEEEEeeCCCEEeC
Q 024868 206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR---------LLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 206 ~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~---------~~~~~v~~~~~s~dg~~la~ 261 (261)
+|++.. ++++.|+.|++||++++..+..+. .|...|.+++|+|||++||+
T Consensus 265 ~~~~~~------~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 323 (340)
T 4aow_A 265 SPNRYW------LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA 323 (340)
T ss_dssp CSSSSE------EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEE
T ss_pred CCCCce------eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEE
Confidence 998874 566678999999999887654433 46678999999999999874
No 37
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-36 Score=244.56 Aligned_cols=248 Identities=13% Similarity=0.136 Sum_probs=185.0
Q ss_pred CceeeEEEEEeeCCc------ceEEEEecCCCC-------------CCCCCceEEEEEcCCCCceecCCeEEeeecCCCC
Q 024868 4 GGTVTCGSWIKRPEN------VNLVVLGKSSRA-------------SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG 64 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~------~~~~~~g~~~~~-------------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (261)
+++|++++|+|++.. ..++|+|..+.. .+.++.++||.++...... .....+.+|.+
T Consensus 133 ~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~----~~~~~l~~~~~ 208 (524)
T 2j04_B 133 GGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHC----VKVQTIVHSFG 208 (524)
T ss_dssp CC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCE----EEEEEEEECCC
T ss_pred CCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCc----eEEEEEEecCC
Confidence 689999999998622 267887764421 1234456666655433211 11234667889
Q ss_pred CceEEEECCC------CCeEEEEecCCcEEEEEEeCCccccc---eeeee-CCCCCCCCCeEEEEEeeCCcEEEEeccCC
Q 024868 65 DPMTIAVNPS------GDDFVCSTTNGGCKLFEVYGGATDIN---LLAKK-MPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (261)
Q Consensus 65 ~v~~~~~~~~------~~~l~~~~~dg~i~i~~~~~~~~~~~---~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 134 (261)
.|.+++|+|+ +.+||+++.||+|++||+........ ..... .....|...|.+++|+|++ .|++|+.||
T Consensus 209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~Dg 287 (524)
T 2j04_B 209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNG 287 (524)
T ss_dssp SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTS
T ss_pred cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCC
Confidence 9999999996 57999999999999999986643110 00000 1112356889999999864 799999999
Q ss_pred eEEEEEccCceE-EeeccccCCceeEE--EEcCCC-CEEEEecCCCcEEEEEccCCcEEEEEeecCC-CceEEEEEecCC
Q 024868 135 HLRIMHWPSLRI-ILDEPKAHKSVLDM--DFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSD-EKIELCRFSKDG 209 (261)
Q Consensus 135 ~i~~~d~~~~~~-~~~~~~~~~~v~~~--~~s~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~p~~ 209 (261)
+|++||++++.. ...+..|...|.++ .|+|++ ++|++++.|++|+|||++++++...+..+.. ..+.+++|+|++
T Consensus 288 tV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~ 367 (524)
T 2j04_B 288 FVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQI 367 (524)
T ss_dssp EEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTT
T ss_pred EEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCc
Confidence 999999987643 23456677899999 578888 8999999999999999999887777766543 247899999999
Q ss_pred CcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 210 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+. +++++.|++|++||++++..+..+..|...|.+++|||+|++||+
T Consensus 368 ~~-----l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~S 414 (524)
T 2j04_B 368 YS-----YIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLA 414 (524)
T ss_dssp TE-----EEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEE
T ss_pred Ce-----EEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEE
Confidence 87 688899999999999998877778889999999999999998873
No 38
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-34 Score=225.89 Aligned_cols=235 Identities=16% Similarity=0.133 Sum_probs=195.6
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
..++|++++|+|+ ..++++|+.++ .|..||..+... ...+.+|...|.+++|+|++++|++++
T Consensus 31 h~~~v~~~~~s~~---~~~l~~~~~dg--------~i~vwd~~~~~~------~~~~~~h~~~v~~~~~~~~~~~l~s~~ 93 (369)
T 3zwl_B 31 HERPLTQVKYNKE---GDLLFSCSKDS--------SASVWYSLNGER------LGTLDGHTGTIWSIDVDCFTKYCVTGS 93 (369)
T ss_dssp CSSCEEEEEECTT---SCEEEEEESSS--------CEEEEETTTCCE------EEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred eeceEEEEEEcCC---CCEEEEEeCCC--------EEEEEeCCCchh------hhhhhhcCCcEEEEEEcCCCCEEEEEe
Confidence 3678999999995 56899999998 888888877664 567888999999999999999999999
Q ss_pred cCCcEEEEEEeCCccccceee------------------e---------e----------------------C-CCCCCC
Q 024868 83 TNGGCKLFEVYGGATDINLLA------------------K---------K----------------------M-PPLQDA 112 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~------------------~---------~----------------------~-~~~~~~ 112 (261)
.||.|++||+.+++....... . . . ....+.
T Consensus 94 ~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (369)
T 3zwl_B 94 ADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHE 173 (369)
T ss_dssp TTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCT
T ss_pred CCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCc
Confidence 999999999987654211100 0 0 0 000011
Q ss_pred --CCeEEEEEeeCCcEEEEeccCCeEEEEEccC-ceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEE
Q 024868 113 --GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW 189 (261)
Q Consensus 113 --~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~ 189 (261)
..+.+++|+|++++|++++.||.|++||+++ .+....+..+...|.+++|+|++++|++++.|+.|++||+++++.+
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 174 GLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL 253 (369)
T ss_dssp TCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCcee
Confidence 1889999999999999999999999999998 6666667777789999999999999999999999999999999998
Q ss_pred EEEeecCCCceEEEEEecCCCcceEEEEEeeCCCc--------------EEEEEECCCCeEEeeeeccCcCeeEEEEeeC
Q 024868 190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--------------LLAVYDISTWNKIGHKRLLRKPASVLSISLD 255 (261)
Q Consensus 190 ~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~--------------~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~d 255 (261)
..+. ....+..++|+|++++ ++.++.++ .+++||+.+++.+..+..|...|.+++|+|+
T Consensus 254 ~~~~--~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~ 326 (369)
T 3zwl_B 254 KKYE--TDCPLNTAVITPLKEF-----IILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQ 326 (369)
T ss_dssp EEEE--CSSCEEEEEECSSSSE-----EEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred eeec--CCCCceeEEecCCCce-----EEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCC
Confidence 8887 3346999999999998 45666665 8999999999999888999999999999999
Q ss_pred CCEEeC
Q 024868 256 GKYLAM 261 (261)
Q Consensus 256 g~~la~ 261 (261)
|++|++
T Consensus 327 ~~~l~s 332 (369)
T 3zwl_B 327 GTSYAS 332 (369)
T ss_dssp SSEEEE
T ss_pred CCEEEE
Confidence 999874
No 39
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.7e-35 Score=230.85 Aligned_cols=234 Identities=12% Similarity=0.166 Sum_probs=187.6
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
..++|+|++|+|+.....++++|+.++ .|..||..+... .....+.+|...|.+++|+|++++|++++
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg--------~i~iw~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWAN--------DVRCWEVQDSGQ----TIPKAQQMHTGPVLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTS--------EEEEEEECTTSC----EEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCC--------cEEEEEcCCCCc----eeEEEeccccCCEEEEEECcCCCEEEEEc
Confidence 468999999999632257999999999 777787765221 12356788999999999999999999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEE--eeCCcEEEEeccCCeEEEEEccCceEEeecccc-------
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF--SVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA------- 153 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~------- 153 (261)
.||.|++||+.++.. .....|...|.+++| +|++++|++++.|+.|++||+++++.+..+..+
T Consensus 106 ~dg~v~iwd~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 177 (368)
T 3mmy_A 106 CDKTAKMWDLSSNQA--------IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCAD 177 (368)
T ss_dssp TTSEEEEEETTTTEE--------EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEE
T ss_pred CCCcEEEEEcCCCCc--------eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEE
Confidence 999999999988764 223346789999999 889999999999999999999876543322211
Q ss_pred ----------------------------------CCceeEEEEcCCCCE----EEEecCCCcEEEEEccCC---cEEEEE
Q 024868 154 ----------------------------------HKSVLDMDFSLDSEF----LATTSTDGSARIWKTEDG---VAWTFL 192 (261)
Q Consensus 154 ----------------------------------~~~v~~~~~s~~~~~----l~~~~~d~~i~iwd~~~~---~~~~~~ 192 (261)
...+.++.+.++... +++++.|+.|++||++.. +.+..+
T Consensus 178 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~ 257 (368)
T 3mmy_A 178 VIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTF 257 (368)
T ss_dssp EETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEE
T ss_pred ecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceee
Confidence 123445555554444 999999999999999887 455666
Q ss_pred eecCCC-----------ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 193 TRNSDE-----------KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 193 ~~~~~~-----------~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
..+... +|.+++|+|++++ +++++.||.|++||+++++.+..+..|...|.+++|+|||++||+
T Consensus 258 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-----l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 332 (368)
T 3mmy_A 258 KCHRSNGTNTSAPQDIYAVNGIAFHPVHGT-----LATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAY 332 (368)
T ss_dssp ECSEEC----CCCEEECCEEEEEECTTTCC-----EEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEE
T ss_pred eeeecccccccccccccceEEEEEecCCCE-----EEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEE
Confidence 655432 5999999999998 689999999999999999999888889999999999999999874
No 40
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.8e-35 Score=232.67 Aligned_cols=233 Identities=13% Similarity=0.117 Sum_probs=191.1
Q ss_pred CCceeeEEEEEeeCCc-ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC-CCCeEEE
Q 024868 3 GGGTVTCGSWIKRPEN-VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVC 80 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 80 (261)
...+|++++|+|+... ..++++|+.++ .|..||..+... ...+.+|...|.+++|+| ++++|++
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg--------~i~v~d~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~l~s 133 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRG--------IIRIINPITMQC------IKHYVGHGNAINELKFHPRDPNLLLS 133 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTC--------EEEEECTTTCCE------EEEEESCCSCEEEEEECSSCTTEEEE
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCC--------EEEEEEchhceE------eeeecCCCCcEEEEEECCCCCCEEEE
Confidence 3467999999997532 56899999999 999999887664 556788999999999999 9999999
Q ss_pred EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecc---------
Q 024868 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP--------- 151 (261)
Q Consensus 81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--------- 151 (261)
++.||.|++||+.+++..... .....+...|.+++|+|++++|++++.|+.|++||+++++....+.
T Consensus 134 ~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 209 (366)
T 3k26_A 134 VSKDHALRLWNIQTDTLVAIF----GGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 209 (366)
T ss_dssp EETTSCEEEEETTTTEEEEEE----CSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGG
T ss_pred EeCCCeEEEEEeecCeEEEEe----cccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCC
Confidence 999999999999877542111 1113467899999999999999999999999999998765433222
Q ss_pred -------------------ccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcE--------------EEEEeecCCC
Q 024868 152 -------------------KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA--------------WTFLTRNSDE 198 (261)
Q Consensus 152 -------------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~--------------~~~~~~~~~~ 198 (261)
.+...|.+++|+ ++++++++.|+.|++||+.+++. +..+..+..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 286 (366)
T 3k26_A 210 TNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC- 286 (366)
T ss_dssp CSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-
T ss_pred CcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCC-
Confidence 266789999999 77999999999999999987644 666666655
Q ss_pred ceEEEEEecC--CCcceEEEEEeeCCCcEEEEEECCCCeE----Eeeeecc--CcCeeEEEEeeCCCEEeC
Q 024868 199 KIELCRFSKD--GTKPFLFCTVQRGDKALLAVYDISTWNK----IGHKRLL--RKPASVLSISLDGKYLAM 261 (261)
Q Consensus 199 ~v~~~~~~p~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~----~~~~~~~--~~~v~~~~~s~dg~~la~ 261 (261)
.+.+++|+|+ +++ +++++.||.|++||+++++. ...+..+ ...|.+++|+|+|++|++
T Consensus 287 ~v~~~~~s~~~~~~~-----l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 352 (366)
T 3k26_A 287 DIWYMRFSMDFWQKM-----LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIA 352 (366)
T ss_dssp CSSCCCCEECTTSSE-----EEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred cEEEEEEcCCCCCcE-----EEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEE
Confidence 5999999999 887 68899999999999998753 3355556 689999999999999874
No 41
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4e-34 Score=222.51 Aligned_cols=233 Identities=14% Similarity=0.126 Sum_probs=193.0
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
...+|++++|+|+ ..++++++ ++ .+..||..+.... ..........|...|.+++|+|++++|++++
T Consensus 50 h~~~v~~~~~~~~---~~~l~~~~-dg--------~i~iw~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 116 (337)
T 1gxr_A 50 HGEVVCAVTISNP---TRHVYTGG-KG--------CVKVWDISHPGNK-SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG 116 (337)
T ss_dssp CSSCCCEEEECSS---SSEEEEEC-BS--------EEEEEETTSTTCC-SCSEEEECSCTTSBEEEEEECTTSSEEEEEE
T ss_pred CCCceEEEEEecC---CcEEEEcC-CC--------eEEEEECCCCCce-eeeecccccCCCCcEEEEEEcCCCCEEEEEc
Confidence 4678999999985 56788877 78 7888887665421 1222333347889999999999999999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 162 (261)
.|+.|++||+.+...... .....+...+.+++|+|+++++++++.|+.|++||+++++....+..|...+.+++|
T Consensus 117 ~d~~i~~~d~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~ 191 (337)
T 1gxr_A 117 EASTLSIWDLAAPTPRIK-----AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 191 (337)
T ss_dssp SSSEEEEEECCCC--EEE-----EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred CCCcEEEEECCCCCccee-----eecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEE
Confidence 999999999987653111 112235678999999999999999999999999999999888877778889999999
Q ss_pred cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (261)
Q Consensus 163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~ 242 (261)
+|++++|++++.|+.|++||+++++.+..+. ....+.+++|+|++++ +++++.++.|++||+++++.. .+..
T Consensus 192 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~-----l~~~~~~~~i~~~~~~~~~~~-~~~~ 263 (337)
T 1gxr_A 192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEW-----LAVGMESSNVEVLHVNKPDKY-QLHL 263 (337)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSE-----EEEEETTSCEEEEETTSSCEE-EECC
T ss_pred CCCCCEEEEEecCCcEEEEECCCCceEeeec--CCCceEEEEECCCCCE-----EEEEcCCCcEEEEECCCCCeE-EEcC
Confidence 9999999999999999999999999887775 3346999999999998 678888999999999988765 5667
Q ss_pred cCcCeeEEEEeeCCCEEeC
Q 024868 243 LRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 243 ~~~~v~~~~~s~dg~~la~ 261 (261)
+...+.+++|+|++++|++
T Consensus 264 ~~~~v~~~~~~~~~~~l~~ 282 (337)
T 1gxr_A 264 HESCVLSLKFAYCGKWFVS 282 (337)
T ss_dssp CSSCEEEEEECTTSSEEEE
T ss_pred CccceeEEEECCCCCEEEE
Confidence 8899999999999998874
No 42
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.5e-34 Score=245.55 Aligned_cols=233 Identities=12% Similarity=0.160 Sum_probs=192.9
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
...+|+|++|+|+ +..++++|+.|+ .|..|+....... .......+.+|...|.+++|+|++++|++++
T Consensus 381 H~~~V~~v~~~~~--~~~~l~s~s~D~--------~i~~W~~~~~~~~-~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs 449 (694)
T 3dm0_A 381 HTDMVTAIATPID--NADIIVSASRDK--------SIILWKLTKDDKA-YGVAQRRLTGHSHFVEDVVLSSDGQFALSGS 449 (694)
T ss_dssp CSSCEEEEECCTT--CCSEEEEEETTS--------EEEEEECCCSTTC-SCEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred CCceeEEEEecCC--CCCEEEEEeCCC--------cEEEEEccCCCcc-cccccceecCCCCcEEEEEECCCCCEEEEEe
Confidence 3678999999875 357999999999 7888877553211 1223456889999999999999999999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeec---cccCCceeE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE---PKAHKSVLD 159 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~v~~ 159 (261)
.|++|++||+.++.... ....|...|.+++|+|++++|++++.|++|++||.......... ..|...|.+
T Consensus 450 ~Dg~v~vwd~~~~~~~~-------~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 522 (694)
T 3dm0_A 450 WDGELRLWDLAAGVSTR-------RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSC 522 (694)
T ss_dssp TTSEEEEEETTTTEEEE-------EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEE
T ss_pred CCCcEEEEECCCCccee-------EEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEE
Confidence 99999999998775421 12346789999999999999999999999999998655432221 245567999
Q ss_pred EEEcCCC--CEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEE
Q 024868 160 MDFSLDS--EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI 237 (261)
Q Consensus 160 ~~~s~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~ 237 (261)
++|+|++ ..+++++.|+.|++||++++++...+..|.. .|++++|+|++++ +++++.|+.|++||+++++.+
T Consensus 523 ~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~-----l~sg~~Dg~i~iwd~~~~~~~ 596 (694)
T 3dm0_A 523 VRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG-YVSTVAVSPDGSL-----CASGGKDGVVLLWDLAEGKKL 596 (694)
T ss_dssp EEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSE-----EEEEETTSBCEEEETTTTEEE
T ss_pred EEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCE-----EEEEeCCCeEEEEECCCCceE
Confidence 9999987 5799999999999999999999988887765 6999999999998 789999999999999999987
Q ss_pred eeeeccCcCeeEEEEeeCCCEEe
Q 024868 238 GHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 238 ~~~~~~~~~v~~~~~s~dg~~la 260 (261)
..+. +...+.+++|+|++.+|+
T Consensus 597 ~~~~-~~~~v~~~~~sp~~~~l~ 618 (694)
T 3dm0_A 597 YSLE-ANSVIHALCFSPNRYWLC 618 (694)
T ss_dssp ECCB-CSSCEEEEEECSSSSEEE
T ss_pred EEec-CCCcEEEEEEcCCCcEEE
Confidence 6554 456899999999999886
No 43
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.1e-34 Score=244.71 Aligned_cols=229 Identities=15% Similarity=0.158 Sum_probs=189.3
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
..+|.+++|+|+ ..++++|+.|+ .|..||..+... ...+.+|...|.+++|+|++++|++++.
T Consensus 430 ~~~v~~v~~s~~---g~~l~sgs~Dg--------~v~vwd~~~~~~------~~~~~~h~~~v~~~~~s~~~~~l~s~s~ 492 (694)
T 3dm0_A 430 SHFVEDVVLSSD---GQFALSGSWDG--------ELRLWDLAAGVS------TRRFVGHTKDVLSVAFSLDNRQIVSASR 492 (694)
T ss_dssp SSCEEEEEECTT---SSEEEEEETTS--------EEEEEETTTTEE------EEEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred CCcEEEEEECCC---CCEEEEEeCCC--------cEEEEECCCCcc------eeEEeCCCCCEEEEEEeCCCCEEEEEeC
Confidence 578999999985 56899999999 999999887664 5578899999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC--cEEEEeccCCeEEEEEccCceEEeeccccCCceeEEE
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG--SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~ 161 (261)
|++|++||...... .. .......|...|.+++|+|++ ..+++++.|++|++||+++++....+..|.+.|.+++
T Consensus 493 D~~i~iwd~~~~~~-~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~ 568 (694)
T 3dm0_A 493 DRTIKLWNTLGECK-YT---ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVA 568 (694)
T ss_dssp TSCEEEECTTSCEE-EE---ECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred CCEEEEEECCCCcc-ee---eccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 99999999754432 11 111223466789999999986 5799999999999999999888878888888999999
Q ss_pred EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (261)
Q Consensus 162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~ 241 (261)
|+|++++|++++.|+.|++||+++++++..+..+ ..+.+++|+|++.+ +++ +.++.|++||+++++.+..+.
T Consensus 569 ~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~-----l~~-~~~~~i~iwd~~~~~~~~~~~ 640 (694)
T 3dm0_A 569 VSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN--SVIHALCFSPNRYW-----LCA-ATEHGIKIWDLESKSIVEDLK 640 (694)
T ss_dssp ECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS--SCEEEEEECSSSSE-----EEE-EETTEEEEEETTTTEEEEEEC
T ss_pred EeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC--CcEEEEEEcCCCcE-----EEE-EcCCCEEEEECCCCCChhhhc
Confidence 9999999999999999999999999988776643 35999999999886 344 445679999999988775543
Q ss_pred ccC-------------------cCeeEEEEeeCCCEEeC
Q 024868 242 LLR-------------------KPASVLSISLDGKYLAM 261 (261)
Q Consensus 242 ~~~-------------------~~v~~~~~s~dg~~la~ 261 (261)
.+. ..+.+++|+|||++|++
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~s 679 (694)
T 3dm0_A 641 VDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFS 679 (694)
T ss_dssp CCCC----------------CCCCEEEEEECTTSSEEEE
T ss_pred cccccccccccccccccCCceeEEeeeEEEcCCCCEEEE
Confidence 221 13678999999999974
No 44
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.6e-34 Score=228.66 Aligned_cols=239 Identities=14% Similarity=0.107 Sum_probs=191.7
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC----C---
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS----G--- 75 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~--- 75 (261)
..++|++++|+| .++++|+.++ .|..|+..+............+.+|...|.+++|+|+ +
T Consensus 15 h~~~i~~~~~~~-----~~l~s~~~dg--------~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~ 81 (397)
T 1sq9_A 15 HDADIFSVSACN-----SFTVSCSGDG--------YLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL 81 (397)
T ss_dssp SSSCEEEEEECS-----SEEEEEETTS--------EEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE
T ss_pred hhcCeEEEEecC-----CeEEEEcCCC--------EEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccc
Confidence 467999999987 3899999999 8888888766511111224567789999999999999 9
Q ss_pred CeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCC---CCCeEEEEEe----eCCcE-EEEeccCCeEEEEEccC----
Q 024868 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD---AGPQKCLSFS----VDGSR-FAAGGVDGHLRIMHWPS---- 143 (261)
Q Consensus 76 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s----~~~~~-l~~~~~d~~i~~~d~~~---- 143 (261)
++|++++.|+.|++|++.+................. ...|.+++|+ |++++ |++++.|+.|++||+.+
T Consensus 82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 161 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE 161 (397)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred cEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence 999999999999999998876422211111111111 3789999999 99999 99999999999999988
Q ss_pred --ceEEe-----ec-------cccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee---c---CCCceEEE
Q 024868 144 --LRIIL-----DE-------PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR---N---SDEKIELC 203 (261)
Q Consensus 144 --~~~~~-----~~-------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~---~~~~v~~~ 203 (261)
++.+. .+ ..+...+.+++|+|++ ++++++.|+.|++||+++++++..+.. | .. .+.++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~-~i~~i 239 (397)
T 1sq9_A 162 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN-SIRSV 239 (397)
T ss_dssp HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC-CEEEE
T ss_pred cccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCC-ccceE
Confidence 55443 33 3356689999999999 999999999999999999999988887 5 44 69999
Q ss_pred EEecCCCcceEEEEEeeCCC---cEEEEEECCCCeEEeeeec-------------cCcCeeEEEEeeCCCEEeC
Q 024868 204 RFSKDGTKPFLFCTVQRGDK---ALLAVYDISTWNKIGHKRL-------------LRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 204 ~~~p~~~~~~~~~~~~~~~d---~~i~~~d~~~~~~~~~~~~-------------~~~~v~~~~~s~dg~~la~ 261 (261)
+|+|++++ +++++.| +.|++||+++++.+..+.. |...+.+++|+|++++|++
T Consensus 240 ~~~~~~~~-----l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 308 (397)
T 1sq9_A 240 KFSPQGSL-----LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS 308 (397)
T ss_dssp EECSSTTE-----EEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE
T ss_pred EECCCCCE-----EEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEE
Confidence 99999998 6788888 9999999999998888887 8899999999999999874
No 45
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-34 Score=227.37 Aligned_cols=233 Identities=12% Similarity=0.105 Sum_probs=185.2
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC--CCeEEE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVC 80 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~ 80 (261)
..++|++++|+|+ ..++++|+.++ .|..||...... .....+.+|...|.+++|+|+ +++|++
T Consensus 10 h~~~v~~~~~s~~---~~~l~~~~~dg--------~i~iw~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 74 (379)
T 3jrp_A 10 HNELIHDAVLDYY---GKRLATCSSDK--------TIKIFEVEGETH----KLIDTLTGHEGPVWRVDWAHPKFGTILAS 74 (379)
T ss_dssp CCCCEEEEEECSS---SSEEEEEETTS--------CEEEEEEETTEE----EEEEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred CcccEEEEEEcCC---CCEEEEEECCC--------cEEEEecCCCcc----eeeeEecCCCCcEEEEEeCCCCCCCEEEE
Confidence 3678999999996 56899998888 666666543221 225568899999999999987 999999
Q ss_pred EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC--CcEEEEeccCCeEEEEEccCce--EEeeccccCCc
Q 024868 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLR--IILDEPKAHKS 156 (261)
Q Consensus 81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~ 156 (261)
++.||.|++||+.++.... ......+...|.+++|+|+ +++|++++.|+.|++||+++.. .......+...
T Consensus 75 ~~~dg~v~iwd~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 149 (379)
T 3jrp_A 75 CSYDGKVLIWKEENGRWSQ-----IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 149 (379)
T ss_dssp EETTSCEEEEEEETTEEEE-----EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTC
T ss_pred eccCCEEEEEEcCCCceeE-----eeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCc
Confidence 9999999999999875211 1122235688999999999 9999999999999999998763 33344567778
Q ss_pred eeEEEEcC-------------CCCEEEEecCCCcEEEEEccCCc----EEEEEeecCCCceEEEEEecC---CCcceEEE
Q 024868 157 VLDMDFSL-------------DSEFLATTSTDGSARIWKTEDGV----AWTFLTRNSDEKIELCRFSKD---GTKPFLFC 216 (261)
Q Consensus 157 v~~~~~s~-------------~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~p~---~~~~~~~~ 216 (261)
|.+++|+| ++.++++++.|+.|++||+++++ ....+..|.. .|.+++|+|+ +++
T Consensus 150 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~----- 223 (379)
T 3jrp_A 150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSY----- 223 (379)
T ss_dssp EEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEE-----
T ss_pred eEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCCCCCCe-----
Confidence 99999999 69999999999999999998765 3345555544 6999999999 776
Q ss_pred EEeeCCCcEEEEEECCCCe-----EEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 217 TVQRGDKALLAVYDISTWN-----KIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 217 ~~~~~~d~~i~~~d~~~~~-----~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+++++.||.|++||+++++ .+.....+...+.+++|+|+|++|++
T Consensus 224 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 273 (379)
T 3jrp_A 224 LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL 273 (379)
T ss_dssp EEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEE
T ss_pred EEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEE
Confidence 6889999999999999864 22222336788999999999998874
No 46
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=7.7e-34 Score=225.98 Aligned_cols=238 Identities=15% Similarity=0.154 Sum_probs=189.6
Q ss_pred CCceeeEEEEEee----CCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCC-----CCCceEEEEC-
Q 024868 3 GGGTVTCGSWIKR----PENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-----EGDPMTIAVN- 72 (261)
Q Consensus 3 ~~~~v~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~- 72 (261)
...+|++++|+|+ .....++++++.++ .|..|+..+.... .......+..| ...|.+++|+
T Consensus 61 h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg--------~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~ 131 (397)
T 1sq9_A 61 HKSGLHHVDVLQAIERDAFELCLVATTSFSG--------DLLFYRITREDET-KKVIFEKLDLLDSDMKKHSFWALKWGA 131 (397)
T ss_dssp CTTCEEEEEEEEEEETTTEEEEEEEEEETTS--------CEEEEEEEECTTT-CCEEEEEECCSCTTGGGSCEEEEEEEC
T ss_pred CCCcEEEEEEecccccCCccccEEEEEcCCC--------CEEEEEccCCccc-ccccceeecccccccCCCcEEEEEEee
Confidence 3578999999996 21116899998888 6666665544320 11113456667 5899999999
Q ss_pred ---CCCCe-EEEEecCCcEEEEEEeC------Ccccc-----ceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEE
Q 024868 73 ---PSGDD-FVCSTTNGGCKLFEVYG------GATDI-----NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR 137 (261)
Q Consensus 73 ---~~~~~-l~~~~~dg~i~i~~~~~------~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 137 (261)
|+++. |++++.||.|++||+.. ..... .+.........+...+.+++|+|++ ++++++.|+.|+
T Consensus 132 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~ 210 (397)
T 1sq9_A 132 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQ 210 (397)
T ss_dssp CC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEE
T ss_pred ccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEE
Confidence 99999 99999999999999998 44322 1110000113356789999999999 999999999999
Q ss_pred EEEccCceEEeeccc---c---CCceeEEEEcCCCCEEEEecCC---CcEEEEEccCCcEEEEEee-------------c
Q 024868 138 IMHWPSLRIILDEPK---A---HKSVLDMDFSLDSEFLATTSTD---GSARIWKTEDGVAWTFLTR-------------N 195 (261)
Q Consensus 138 ~~d~~~~~~~~~~~~---~---~~~v~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~-------------~ 195 (261)
+||+++++.+..+.. | ...+.+++|+|++++|++++.| +.|++||+++++++..+.. +
T Consensus 211 i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (397)
T 1sq9_A 211 ISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH 290 (397)
T ss_dssp EEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB
T ss_pred EEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccccccc
Confidence 999999888777776 6 7799999999999999999999 9999999999999998887 5
Q ss_pred CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee------cc---------------CcCeeEEEEee
Q 024868 196 SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR------LL---------------RKPASVLSISL 254 (261)
Q Consensus 196 ~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~------~~---------------~~~v~~~~~s~ 254 (261)
.. .|.+++|+|++++ +++++.|+.|++||+++++.+..+. .+ ...|.+++|+|
T Consensus 291 ~~-~v~~~~~~~~~~~-----l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~ 364 (397)
T 1sq9_A 291 SS-WVMSLSFNDSGET-----LCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK 364 (397)
T ss_dssp SS-CEEEEEECSSSSE-----EEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC
T ss_pred CC-cEEEEEECCCCCE-----EEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecc
Confidence 54 6999999999998 6889999999999999999988888 67 88999999999
Q ss_pred CC
Q 024868 255 DG 256 (261)
Q Consensus 255 dg 256 (261)
+|
T Consensus 365 ~g 366 (397)
T 1sq9_A 365 KG 366 (397)
T ss_dssp TT
T ss_pred cc
Confidence 98
No 47
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-34 Score=232.29 Aligned_cols=240 Identities=9% Similarity=0.113 Sum_probs=194.5
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC-CCeEEEE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCS 81 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~ 81 (261)
...+|++++|+|+ ..++++|+.++ .+..||...... .......+.+|...|.+++|+|+ +++|+++
T Consensus 66 ~~~~v~~~~~s~~---~~~l~~~~~dg--------~v~vw~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 132 (416)
T 2pm9_A 66 VDSKFNDLDWSHN---NKIIAGALDNG--------SLELYSTNEANN--AINSMARFSNHSSSVKTVKFNAKQDNVLASG 132 (416)
T ss_dssp CSSCEEEEEECSS---SSCEEEEESSS--------CEEEECCSSTTS--CCCEEEECCCSSSCCCEEEECSSSTTBEEEE
T ss_pred cCCceEEEEECCC---CCeEEEEccCC--------eEEEeecccccc--cccchhhccCCccceEEEEEcCCCCCEEEEE
Confidence 4578999999985 56888998888 777888765211 01125577889999999999998 8999999
Q ss_pred ecCCcEEEEEEeCCccccce--eeeeCCCCCCCCCeEEEEEeeC-CcEEEEeccCCeEEEEEccCceEEeecccc-----
Q 024868 82 TTNGGCKLFEVYGGATDINL--LAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEPKA----- 153 (261)
Q Consensus 82 ~~dg~i~i~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~----- 153 (261)
+.|+.|++||+.+....... .........+...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..+
T Consensus 133 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 212 (416)
T 2pm9_A 133 GNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSG 212 (416)
T ss_dssp CSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSC
T ss_pred cCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccc
Confidence 99999999999877521100 0000122346688999999998 789999999999999999998887766655
Q ss_pred -CCceeEEEEcCCC-CEEEEecCCC---cEEEEEccCC-cEEEEEe-ecCCCceEEEEEec-CCCcceEEEEEeeCCCcE
Q 024868 154 -HKSVLDMDFSLDS-EFLATTSTDG---SARIWKTEDG-VAWTFLT-RNSDEKIELCRFSK-DGTKPFLFCTVQRGDKAL 225 (261)
Q Consensus 154 -~~~v~~~~~s~~~-~~l~~~~~d~---~i~iwd~~~~-~~~~~~~-~~~~~~v~~~~~~p-~~~~~~~~~~~~~~~d~~ 225 (261)
...+.+++|+|++ .++++++.|+ .|++||++++ +++..+. .|.. .|.+++|+| ++++ +++++.|+.
T Consensus 213 ~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~-----l~s~~~dg~ 286 (416)
T 2pm9_A 213 IKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQK-GILSLDWCHQDEHL-----LLSSGRDNT 286 (416)
T ss_dssp CCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSS-CEEEEEECSSCSSC-----EEEEESSSE
T ss_pred cCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccC-ceeEEEeCCCCCCe-----EEEEeCCCC
Confidence 5689999999997 6899999998 9999999986 5666666 5544 699999999 8887 688999999
Q ss_pred EEEEECCCCeEEeeeeccCcCeeEEEEeeCC-CEEeC
Q 024868 226 LAVYDISTWNKIGHKRLLRKPASVLSISLDG-KYLAM 261 (261)
Q Consensus 226 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg-~~la~ 261 (261)
|++||+++++.+..+..|...+.+++|+|++ ++|++
T Consensus 287 v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s 323 (416)
T 2pm9_A 287 VLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFAC 323 (416)
T ss_dssp EEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEE
T ss_pred EEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEE
Confidence 9999999999998889999999999999999 77763
No 48
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.3e-35 Score=237.80 Aligned_cols=230 Identities=16% Similarity=0.181 Sum_probs=176.8
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC-CCCeEEEEe
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCST 82 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 82 (261)
...|+|++|+|. ..+++|+|+.+| .|..||..+... .....+.+|.+.|++++|+| ++++|++++
T Consensus 119 ~~~V~~l~~~P~--~~~~lasGs~dg--------~i~lWd~~~~~~----~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s 184 (435)
T 4e54_B 119 DRRATSLAWHPT--HPSTVAVGSKGG--------DIMLWNFGIKDK----PTFIKGIGAGGSITGLKFNPLNTNQFYASS 184 (435)
T ss_dssp SSCEEEEEECSS--CTTCEEEEETTS--------CEEEECSSCCSC----CEEECCCSSSCCCCEEEECSSCTTEEEEEC
T ss_pred CCCEEEEEEeCC--CCCEEEEEeCCC--------EEEEEECCCCCc----eeEEEccCCCCCEEEEEEeCCCCCEEEEEe
Confidence 356999999985 356899999999 888888765542 22445678999999999998 789999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 162 (261)
.||+|++||+++..... ......+...+.+++|+|++++|++|+.||.|++||++. +.+..+..|...|.+++|
T Consensus 185 ~D~~v~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~ 258 (435)
T 4e54_B 185 MEGTTRLQDFKGNILRV-----FASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVAL 258 (435)
T ss_dssp SSSCEEEEETTSCEEEE-----EECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEE
T ss_pred CCCEEEEeeccCCceeE-----EeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeee
Confidence 99999999997654211 111122345678899999999999999999999999864 445666778889999999
Q ss_pred cCCCC-EEEEecCCCcEEEEEccCCcEEEEE---eecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEe
Q 024868 163 SLDSE-FLATTSTDGSARIWKTEDGVAWTFL---TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG 238 (261)
Q Consensus 163 s~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~ 238 (261)
+|++. ++++++.|+.|++||+++.+....+ ..| ..+|++++|+|+|++ +++++.|+.|++||+++++...
T Consensus 259 ~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~spdg~~-----l~s~~~D~~i~iwd~~~~~~~~ 332 (435)
T 4e54_B 259 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPH-RHPVNAACFSPDGAR-----LLTTDQKSEIRVYSASQWDCPL 332 (435)
T ss_dssp CTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBC-SSCEEECCBCTTSSE-----EEEEESSSCEEEEESSSSSSEE
T ss_pred cCCCceEEEEecCcceeeEEecccccccceEEEeeec-cccccceeECCCCCe-----eEEEcCCCEEEEEECCCCccce
Confidence 99876 6789999999999999876644333 234 446999999999998 6899999999999999887665
Q ss_pred eeeccCc------CeeEEEEeeCCCEE
Q 024868 239 HKRLLRK------PASVLSISLDGKYL 259 (261)
Q Consensus 239 ~~~~~~~------~v~~~~~s~dg~~l 259 (261)
.+..+.. .+....|+|++.++
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (435)
T 4e54_B 333 GLIPHPHRHFQHLTPIKAAWHPRYNLI 359 (435)
T ss_dssp EECCCCCCCCSSSCCCBCEECSSSSCE
T ss_pred EEecccccccccceeEEEEEcCCCCEE
Confidence 5443321 22334555555544
No 49
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-34 Score=230.12 Aligned_cols=233 Identities=20% Similarity=0.233 Sum_probs=195.1
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
.++|++++|+|+ ..++++|+.++ .+..||... .. ...+..|...|.+++|+|++++|++++.
T Consensus 108 ~~~v~~~~~s~~---~~~l~~~~~dg--------~i~i~~~~~-~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 169 (425)
T 1r5m_A 108 TNQVTCLAWSHD---GNSIVTGVENG--------ELRLWNKTG-AL------LNVLNFHRAPIVSVKWNKDGTHIISMDV 169 (425)
T ss_dssp CBCEEEEEECTT---SSEEEEEETTS--------CEEEEETTS-CE------EEEECCCCSCEEEEEECTTSSEEEEEET
T ss_pred CCceEEEEEcCC---CCEEEEEeCCC--------eEEEEeCCC-Ce------eeeccCCCccEEEEEECCCCCEEEEEec
Confidence 458999999995 56889998888 777787433 22 5567889999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeee-------------------------------------------------CCCCCCCCC
Q 024868 84 NGGCKLFEVYGGATDINLLAKK-------------------------------------------------MPPLQDAGP 114 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~-------------------------------------------------~~~~~~~~~ 114 (261)
|+.|++||+.++.......... .....+...
T Consensus 170 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 249 (425)
T 1r5m_A 170 ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGP 249 (425)
T ss_dssp TCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSC
T ss_pred CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCc
Confidence 9999999997665322110000 011134678
Q ss_pred eEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee
Q 024868 115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR 194 (261)
Q Consensus 115 v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 194 (261)
|.+++|+|++++|++++.|+.|++||+++++....+..+...+.+++|+|++ ++++++.|+.|++||+++++.+..+..
T Consensus 250 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~ 328 (425)
T 1r5m_A 250 ISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV 328 (425)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred eEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc
Confidence 9999999999999999999999999999988777777788899999999999 999999999999999999999988887
Q ss_pred cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe--------------------EEeeeeccCc--CeeEEEE
Q 024868 195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN--------------------KIGHKRLLRK--PASVLSI 252 (261)
Q Consensus 195 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~--------------------~~~~~~~~~~--~v~~~~~ 252 (261)
+.. ++.+++|+|++++ +++++.||.|++||+++++ .+..+..+.. .|.+++|
T Consensus 329 ~~~-~i~~~~~s~~~~~-----l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 402 (425)
T 1r5m_A 329 DGV-PIFAGRISQDGQK-----YAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSW 402 (425)
T ss_dssp TTC-CEEEEEECTTSSE-----EEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEE
T ss_pred CCc-cEEEEEEcCCCCE-----EEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEc
Confidence 655 6999999999998 6888899999999999887 7777777765 9999999
Q ss_pred eeCCCEEeC
Q 024868 253 SLDGKYLAM 261 (261)
Q Consensus 253 s~dg~~la~ 261 (261)
+|++++|++
T Consensus 403 s~~~~~l~~ 411 (425)
T 1r5m_A 403 NCAGNKISV 411 (425)
T ss_dssp CTTSSEEEE
T ss_pred cCCCceEEE
Confidence 999999873
No 50
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=233.40 Aligned_cols=241 Identities=12% Similarity=0.141 Sum_probs=184.7
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCce-----ecCCeEEeeecCCC------------CC
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSV-----YTSPLVTYVFDESE------------GD 65 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~------------~~ 65 (261)
..++|+|++|+|+ ..++++|+.++ .|..||..+... .........+.+|. ..
T Consensus 27 ~~~~V~~v~~s~~---g~~la~g~~dg--------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 27 EADIISTVEFNHS---GELLATGDKGG--------RVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp GGGSEEEEEECSS---SSEEEEEETTS--------EEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCC
T ss_pred ccCcEEEEEECCC---CCEEEEEcCCC--------eEEEEEecCCCCCCcccccceeEecccccccccccccccccccCc
Confidence 4689999999995 66899999999 777777665431 01112355678898 88
Q ss_pred ceEEEECCCC--CeEEEEecCCcEEEEEEeCCcccccee--------------------------------e-eeCCCCC
Q 024868 66 PMTIAVNPSG--DDFVCSTTNGGCKLFEVYGGATDINLL--------------------------------A-KKMPPLQ 110 (261)
Q Consensus 66 v~~~~~~~~~--~~l~~~~~dg~i~i~~~~~~~~~~~~~--------------------------------~-~~~~~~~ 110 (261)
|.+++|+|++ ..|++++.|+.|++|++.......... . .......
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 9999999998 789999999999999997643210000 0 0001234
Q ss_pred CCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee--------ccccCCceeEEEEcCCC-CEEEEecCCCcEEEE
Q 024868 111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD--------EPKAHKSVLDMDFSLDS-EFLATTSTDGSARIW 181 (261)
Q Consensus 111 ~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~--------~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~iw 181 (261)
|...|.+++|+|++++|+++ .|+.|++||+++...... +..|...|.+++|+|++ ++|++++.|+.|++|
T Consensus 176 h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 254 (447)
T 3dw8_B 176 HTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLC 254 (447)
T ss_dssp CSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred CCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEE
Confidence 67899999999999999999 799999999985443332 44667789999999998 999999999999999
Q ss_pred EccCCcE----EEEEeecCC-----------CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC-CeEEeeeeccCc
Q 024868 182 KTEDGVA----WTFLTRNSD-----------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHKRLLRK 245 (261)
Q Consensus 182 d~~~~~~----~~~~~~~~~-----------~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~ 245 (261)
|+++++. +..+..+.. ..|.+++|+|+|++ +++++. +.|++||+++ ++.+..+..|..
T Consensus 255 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-----l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~ 328 (447)
T 3dw8_B 255 DMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY-----MMTRDY-LSVKVWDLNMENRPVETYQVHEY 328 (447)
T ss_dssp ETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE-----EEEEES-SEEEEEETTCCSSCSCCEESCGG
T ss_pred ECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCE-----EEEeeC-CeEEEEeCCCCccccceeecccc
Confidence 9999886 677776653 26999999999998 577777 9999999997 777777776653
Q ss_pred C---------------eeEEEEeeCCCEEeC
Q 024868 246 P---------------ASVLSISLDGKYLAM 261 (261)
Q Consensus 246 ~---------------v~~~~~s~dg~~la~ 261 (261)
. +..++|+|+|++|++
T Consensus 329 ~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s 359 (447)
T 3dw8_B 329 LRSKLCSLYENDCIFDKFECCWNGSDSVVMT 359 (447)
T ss_dssp GTTTHHHHHHTSGGGCCCCEEECTTSSEEEE
T ss_pred ccccccccccccccccceEEEECCCCCEEEE
Confidence 2 234999999999874
No 51
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2e-33 Score=218.51 Aligned_cols=228 Identities=14% Similarity=0.208 Sum_probs=191.4
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
...+|.+++|+|+ ..++++++.++ .+..||..+... .....+..|...+.+++|+|++++|++++
T Consensus 96 ~~~~v~~~~~~~~---~~~l~~~~~d~--------~i~~~d~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 160 (337)
T 1gxr_A 96 RDNYIRSCKLLPD---GCTLIVGGEAS--------TLSIWDLAAPTP----RIKAELTSSAPACYALAISPDSKVCFSCC 160 (337)
T ss_dssp TTSBEEEEEECTT---SSEEEEEESSS--------EEEEEECCCC------EEEEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred CCCcEEEEEEcCC---CCEEEEEcCCC--------cEEEEECCCCCc----ceeeecccCCCceEEEEECCCCCEEEEEe
Confidence 4578999999995 56888998888 888888876552 23556778999999999999999999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 162 (261)
.||.|++||+.+++.... ...+...+.+++|+|++++|++++.|+.|++||+++++..... .+...+.+++|
T Consensus 161 ~dg~v~~~d~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~ 232 (337)
T 1gxr_A 161 SDGNIAVWDLHNQTLVRQ-------FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGY 232 (337)
T ss_dssp TTSCEEEEETTTTEEEEE-------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEE
T ss_pred CCCcEEEEeCCCCceeee-------eecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-cCCCceEEEEE
Confidence 999999999987654211 1235678999999999999999999999999999988876543 46678999999
Q ss_pred cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (261)
Q Consensus 163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~ 242 (261)
+|+++++++++.++.|++||+++++.. .+..+. .++.+++|+|++++ +++++.||.|++||+++++.+. ...
T Consensus 233 s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~-~~v~~~~~~~~~~~-----l~~~~~dg~i~~~~~~~~~~~~-~~~ 304 (337)
T 1gxr_A 233 CPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHE-SCVLSLKFAYCGKW-----FVSTGKDNLLNAWRTPYGASIF-QSK 304 (337)
T ss_dssp CTTSSEEEEEETTSCEEEEETTSSCEE-EECCCS-SCEEEEEECTTSSE-----EEEEETTSEEEEEETTTCCEEE-EEE
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCc-cceeEEEECCCCCE-----EEEecCCCcEEEEECCCCeEEE-Eec
Confidence 999999999999999999999988764 444444 46999999999998 6888899999999999988774 345
Q ss_pred cCcCeeEEEEeeCCCEEeC
Q 024868 243 LRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 243 ~~~~v~~~~~s~dg~~la~ 261 (261)
+...+.+++|+|++++|++
T Consensus 305 ~~~~v~~~~~s~~~~~l~~ 323 (337)
T 1gxr_A 305 ESSSVLSCDISVDDKYIVT 323 (337)
T ss_dssp CSSCEEEEEECTTSCEEEE
T ss_pred CCCcEEEEEECCCCCEEEE
Confidence 7789999999999999873
No 52
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.4e-34 Score=237.81 Aligned_cols=223 Identities=16% Similarity=0.240 Sum_probs=190.0
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
..+|.+++|+|+ ..++++++.++ .+..||..... ...+.+|...+.+++|+|++++|++++.
T Consensus 303 ~~~v~~~~~~~~---~~~l~t~~~d~--------~i~~w~~~~~~-------~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 364 (577)
T 2ymu_A 303 SSSVWGVAFSPD---GQTIASASDDK--------TVKLWNRNGQH-------LQTLTGHSSSVWGVAFSPDGQTIASASD 364 (577)
T ss_dssp SSCEEEEEECTT---SSEEEEEETTS--------CEEEEETTSCE-------EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCeEEEEECCC---CCEEEEEeCCC--------eEEEEeCCCCe-------eEEEeCCCCCEEEEEECCCCCEEEEEeC
Confidence 578999999985 56888998888 77777766544 3457789999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
|+.+++|+...... .....|...|.+++|+|++++|++++.|+.|++||. +++....+..|...|.+++|+
T Consensus 365 dg~v~~~~~~~~~~--------~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s 435 (577)
T 2ymu_A 365 DKTVKLWNRNGQLL--------QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFS 435 (577)
T ss_dssp TSEEEEEETTCCEE--------EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEEC
T ss_pred CCEEEEEcCCCCEE--------EEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEEC
Confidence 99999999543221 112235678999999999999999999999999995 566666777788899999999
Q ss_pred CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc
Q 024868 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL 243 (261)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~ 243 (261)
|++++|++++.|+.|++||. +++.+..+..|.. .|++++|+|++++ +++++.|+.|++||. +++.+..+..|
T Consensus 436 ~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~-~v~~~~~spd~~~-----las~~~d~~i~iw~~-~~~~~~~~~~h 507 (577)
T 2ymu_A 436 PDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-SVRGVAFSPDGQT-----IASASDDKTVKLWNR-NGQLLQTLTGH 507 (577)
T ss_dssp TTSSEEEEEETTSEEEEEET-TSCEEEEEECCSS-CEEEEEECTTSCE-----EEEEETTSEEEEEET-TSCEEEEEECC
T ss_pred CCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCC-CEEEEEEcCCCCE-----EEEEeCCCEEEEEcC-CCCEEEEEeCC
Confidence 99999999999999999996 5677788877765 6999999999998 688999999999995 57788888899
Q ss_pred CcCeeEEEEeeCCCEEeC
Q 024868 244 RKPASVLSISLDGKYLAM 261 (261)
Q Consensus 244 ~~~v~~~~~s~dg~~la~ 261 (261)
...|.+++|+|||++||+
T Consensus 508 ~~~v~~l~~s~dg~~l~s 525 (577)
T 2ymu_A 508 SSSVRGVAFSPDGQTIAS 525 (577)
T ss_dssp SSCEEEEEECTTSSCEEE
T ss_pred CCCEEEEEEcCCCCEEEE
Confidence 999999999999999874
No 53
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.6e-34 Score=230.51 Aligned_cols=239 Identities=10% Similarity=0.150 Sum_probs=188.9
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCC-eEEeeecCCCCCceEEEECCCC-CeEEE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSP-LVTYVFDESEGDPMTIAVNPSG-DDFVC 80 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~ 80 (261)
..++|++++|+|. +..++++|+.++ .|..||..+....... .....+.+|...|.+++|+|++ +.|++
T Consensus 80 h~~~V~~~~~~p~--~~~~l~s~s~dg--------~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s 149 (402)
T 2aq5_A 80 HTAPVLDIAWCPH--NDNVIASGSEDC--------TVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLS 149 (402)
T ss_dssp CSSCEEEEEECTT--CTTEEEEEETTS--------EEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEE
T ss_pred CCCCEEEEEeCCC--CCCEEEEEeCCC--------eEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEE
Confidence 3678999999983 256999999999 8888887765321110 1234677899999999999998 68999
Q ss_pred EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeec-cccCCc-ee
Q 024868 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE-PKAHKS-VL 158 (261)
Q Consensus 81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~-v~ 158 (261)
++.|+.|++||+.+++.... .....|...|.+++|+|++++|++++.|+.|++||+++++.+..+ ..|.+. +.
T Consensus 150 ~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 224 (402)
T 2aq5_A 150 AGCDNVILVWDVGTGAAVLT-----LGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPV 224 (402)
T ss_dssp EETTSCEEEEETTTTEEEEE-----ECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCC
T ss_pred EcCCCEEEEEECCCCCccEE-----EecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcce
Confidence 99999999999988764211 111346789999999999999999999999999999999887776 555554 89
Q ss_pred EEEEcCCCCEEEEe---cCCCcEEEEEccCCcE-EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868 159 DMDFSLDSEFLATT---STDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (261)
Q Consensus 159 ~~~~s~~~~~l~~~---~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~ 234 (261)
++.|+|++++|+++ +.|+.|++||+++++. +......+...+.+++|+|+++++ +++++.|+.|++||+.++
T Consensus 225 ~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l----~~~g~~dg~i~i~d~~~~ 300 (402)
T 2aq5_A 225 HAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIV----YLCGKGDSSIRYFEITSE 300 (402)
T ss_dssp EEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEE----EEEETTCSCEEEEEECSS
T ss_pred EEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEE----EEEEcCCCeEEEEEecCC
Confidence 99999999999999 7899999999998664 334433334469999999999983 256778999999999988
Q ss_pred eE-Eeeeec--cCcCeeEEEEeeCCCEEe
Q 024868 235 NK-IGHKRL--LRKPASVLSISLDGKYLA 260 (261)
Q Consensus 235 ~~-~~~~~~--~~~~v~~~~~s~dg~~la 260 (261)
+. +..+.. +...+.+++|+|++.+++
T Consensus 301 ~~~~~~l~~~~~~~~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 301 APFLHYLSMFSSKESQRGMGYMPKRGLEV 329 (402)
T ss_dssp TTCEEEEEEECCSSCCSEEEECCGGGSCG
T ss_pred CcceEeecccccCCcccceEEecccccce
Confidence 73 333333 458999999999998775
No 54
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.2e-34 Score=247.47 Aligned_cols=229 Identities=10% Similarity=0.087 Sum_probs=200.5
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
.++|.|++|+|+ ..++++|+.++ .|..||..++.. ...+..|...|.+++|+|++++|++++.
T Consensus 13 ~~~v~~i~~sp~---~~~la~~~~~g--------~v~iwd~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 75 (814)
T 3mkq_A 13 SDRVKGIDFHPT---EPWVLTTLYSG--------RVEIWNYETQVE------VRSIQVTETPVRAGKFIARKNWIIVGSD 75 (814)
T ss_dssp CSCEEEEEECSS---SSEEEEEETTS--------EEEEEETTTTEE------EEEEECCSSCEEEEEEEGGGTEEEEEET
T ss_pred CCceEEEEECCC---CCEEEEEeCCC--------EEEEEECCCCce------EEEEecCCCcEEEEEEeCCCCEEEEEeC
Confidence 578999999996 56899999888 889999877664 5567789999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCc-eEEeeccccCCceeEEEE
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-RIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~ 162 (261)
||.|++||+.+++.... ...|...|.+++|+|++++|++++.||.|++||+.++ ........|...|.+++|
T Consensus 76 dg~i~vw~~~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~ 148 (814)
T 3mkq_A 76 DFRIRVFNYNTGEKVVD-------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148 (814)
T ss_dssp TSEEEEEETTTCCEEEE-------EECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEE
T ss_pred CCeEEEEECCCCcEEEE-------EecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEE
Confidence 99999999988764221 1235688999999999999999999999999999887 555556667778999999
Q ss_pred cC-CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEec--CCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868 163 SL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK--DGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (261)
Q Consensus 163 s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~ 239 (261)
+| +++.+++++.|+.|++||+.+++....+..+....+..++|+| ++++ +++++.||.|++||+++++.+..
T Consensus 149 ~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----l~~~~~dg~i~~~d~~~~~~~~~ 223 (814)
T 3mkq_A 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY-----MITASDDLTIKIWDYQTKSCVAT 223 (814)
T ss_dssp ETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCE-----EEEECTTSEEEEEETTTTEEEEE
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCE-----EEEEeCCCEEEEEECCCCcEEEE
Confidence 99 8999999999999999999998888888777656799999999 8887 68899999999999999999888
Q ss_pred eeccCcCeeEEEEeeCCCEEeC
Q 024868 240 KRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 240 ~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+..|...+.+++|+|+|++|++
T Consensus 224 ~~~~~~~v~~~~~~~~~~~l~~ 245 (814)
T 3mkq_A 224 LEGHMSNVSFAVFHPTLPIIIS 245 (814)
T ss_dssp EECCSSCEEEEEECSSSSEEEE
T ss_pred EcCCCCCEEEEEEcCCCCEEEE
Confidence 8889999999999999998874
No 55
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.8e-34 Score=228.83 Aligned_cols=226 Identities=12% Similarity=0.150 Sum_probs=182.8
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG 85 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 85 (261)
.+.+.+|+|+ ..++++|+.++ .+..||..+... ...+.+|...|.+++|+|++++|++++.|+
T Consensus 99 ~~~~~~~~~~---~~~l~~~~~dg--------~i~iwd~~~~~~------~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 161 (420)
T 3vl1_A 99 YTAVDTAKLQ---MRRFILGTTEG--------DIKVLDSNFNLQ------REIDQAHVSEITKLKFFPSGEALISSSQDM 161 (420)
T ss_dssp EEEEEEECSS---SCEEEEEETTS--------CEEEECTTSCEE------EEETTSSSSCEEEEEECTTSSEEEEEETTS
T ss_pred ceEEEEEecC---CCEEEEEECCC--------CEEEEeCCCcce------eeecccccCccEEEEECCCCCEEEEEeCCC
Confidence 3444456664 56899999999 888889876654 556679999999999999999999999999
Q ss_pred cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecccc---C--------
Q 024868 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA---H-------- 154 (261)
Q Consensus 86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~---~-------- 154 (261)
.|++||+.+++.... ...|...|.+++|+|++++|++++.|+.|++||+++++.+..+..+ .
T Consensus 162 ~i~iwd~~~~~~~~~-------~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 234 (420)
T 3vl1_A 162 QLKIWSVKDGSNPRT-------LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 234 (420)
T ss_dssp EEEEEETTTCCCCEE-------EECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEE
T ss_pred eEEEEeCCCCcCceE-------EcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEE
Confidence 999999987764221 1235789999999999999999999999999999998877665532 2
Q ss_pred -------------CceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCC-cceEEEEEee
Q 024868 155 -------------KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT-KPFLFCTVQR 220 (261)
Q Consensus 155 -------------~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~~~~~~~~~ 220 (261)
..+.+++|+|++++|++++.|+.|++||+++++.+..+...+...+.+++|+|+++ + ++++
T Consensus 235 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----l~~g 309 (420)
T 3vl1_A 235 FVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANY-----IYAG 309 (420)
T ss_dssp EECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTE-----EEEE
T ss_pred ecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCE-----EEEE
Confidence 33445556889999999999999999999999988888765566799999999999 5 6889
Q ss_pred CCCcEEEEEECCCCeE-Eeeeec-cCcCeeEEEEeeCCCEEeC
Q 024868 221 GDKALLAVYDISTWNK-IGHKRL-LRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 221 ~~d~~i~~~d~~~~~~-~~~~~~-~~~~v~~~~~s~dg~~la~ 261 (261)
+.||.|++||+++++. +..+.. +...+.++ +.+++++|++
T Consensus 310 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s 351 (420)
T 3vl1_A 310 YENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVS 351 (420)
T ss_dssp ETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEE
T ss_pred eCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEE
Confidence 9999999999998754 555555 56677777 5567877763
No 56
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=3.6e-34 Score=230.47 Aligned_cols=242 Identities=14% Similarity=0.155 Sum_probs=188.4
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceec----CCeEEeeecCCCCCceEEEECCCCC-eE
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT----SPLVTYVFDESEGDPMTIAVNPSGD-DF 78 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~-~l 78 (261)
.++|.+++|+|+ +..++++|+.++ .|..|+........ .......+.+|...|.+++|+|+++ +|
T Consensus 128 ~~~v~~l~~~p~--~~~~lat~~~dg--------~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 197 (430)
T 2xyi_A 128 EGEVNRARYMPQ--NACVIATKTPSS--------DVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYL 197 (430)
T ss_dssp SSCCSEEEEETT--EEEEEEEECSSS--------CEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEE
T ss_pred CCcEEEEEECCC--CCcEEEEECCCC--------cEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeE
Confidence 578999999984 257899998888 66666654310000 0122346778999999999999988 99
Q ss_pred EEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCc---eEEeeccccC
Q 024868 79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSL---RIILDEPKAH 154 (261)
Q Consensus 79 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~ 154 (261)
++++.||.|++|++..................|...|.+++|+| ++.+|++++.|+.|++||++++ +....+..|.
T Consensus 198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 277 (430)
T 2xyi_A 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 277 (430)
T ss_dssp EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC
Confidence 99999999999999875432222211122235668899999999 6789999999999999999876 3444555677
Q ss_pred CceeEEEEcCCCC-EEEEecCCCcEEEEEccC-CcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868 155 KSVLDMDFSLDSE-FLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (261)
Q Consensus 155 ~~v~~~~~s~~~~-~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~ 232 (261)
..|.+++|+|+++ ++++++.|+.|++||+++ ++++..+..|.. .|.+++|+|+++.+ +++++.|+.|++||+.
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~----l~s~~~d~~i~iwd~~ 352 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETI----LASSGTDRRLHVWDLS 352 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTE----EEEEETTSCCEEEEGG
T ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCE----EEEEeCCCcEEEEeCC
Confidence 7899999999887 688999999999999997 566777776655 69999999999763 5788899999999998
Q ss_pred C--------------CeEEeeeeccCcCeeEEEEeeCCC-EEe
Q 024868 233 T--------------WNKIGHKRLLRKPASVLSISLDGK-YLA 260 (261)
Q Consensus 233 ~--------------~~~~~~~~~~~~~v~~~~~s~dg~-~la 260 (261)
. .+.+.....|...|.+++|+|+++ +|+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~ 395 (430)
T 2xyi_A 353 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIIC 395 (430)
T ss_dssp GTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEE
T ss_pred CCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEE
Confidence 6 245556667888999999999999 554
No 57
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.5e-33 Score=217.62 Aligned_cols=195 Identities=19% Similarity=0.282 Sum_probs=171.6
Q ss_pred eEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC
Q 024868 54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD 133 (261)
Q Consensus 54 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 133 (261)
.....+.+|...|.+++|+|++++|++++.||.|++|++.+++... ....|...|.+++|+|++++|++++.|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~-------~~~~h~~~v~~~~~~~~~~~l~s~~~d 86 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-------TISGHKLGISDVAWSSDSNLLVSASDD 86 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-------EECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch-------hhccCCCceEEEEEcCCCCEEEEECCC
Confidence 3466788999999999999999999999999999999998765421 122456789999999999999999999
Q ss_pred CeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcce
Q 024868 134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213 (261)
Q Consensus 134 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 213 (261)
+.|++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|.. ++.+++|+|++++
T Consensus 87 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~-- 163 (312)
T 4ery_A 87 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSL-- 163 (312)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSE--
T ss_pred CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCC-cEEEEEEcCCCCE--
Confidence 9999999999988888888888999999999999999999999999999999999988887655 6999999999998
Q ss_pred EEEEEeeCCCcEEEEEECCCCeEEeeee-ccCcCeeEEEEeeCCCEEeC
Q 024868 214 LFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 214 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~s~dg~~la~ 261 (261)
+++++.|+.|++||+++++.+..+. .+...+..++|+|++++|++
T Consensus 164 ---l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 209 (312)
T 4ery_A 164 ---IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 209 (312)
T ss_dssp ---EEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEE
T ss_pred ---EEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEE
Confidence 6889999999999999988776554 44567899999999999873
No 58
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.4e-33 Score=220.11 Aligned_cols=240 Identities=14% Similarity=0.086 Sum_probs=188.8
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC--CCCeEEE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVC 80 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~ 80 (261)
...+|+|++|+|+ ..++++|+.++ .|..||..+... .......+.+|...|.+++|+| ++++|++
T Consensus 10 H~~~v~~~~~~~~---~~~l~~~~~dg--------~i~iw~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s 76 (351)
T 3f3f_A 10 HDDLVHDVVYDFY---GRHVATCSSDQ--------HIKVFKLDKDTS--NWELSDSWRAHDSSIVAIDWASPEYGRIIAS 76 (351)
T ss_dssp CSSCEEEEEECSS---SSEEEEEETTS--------EEEEEEECSSSC--CEEEEEEEECCSSCEEEEEECCGGGCSEEEE
T ss_pred cccceeEEEEcCC---CCEEEEeeCCC--------eEEEEECCCCCC--cceecceeccCCCcEEEEEEcCCCCCCEEEE
Confidence 4679999999995 56899999999 777777765431 1123456788999999999999 6999999
Q ss_pred EecCCcEEEEEEeCCccccc--eeeeeCCCCCCCCCeEEEEEeeC--CcEEEEeccCCeEEEEEccCceEEeecc-----
Q 024868 81 STTNGGCKLFEVYGGATDIN--LLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRIILDEP----- 151 (261)
Q Consensus 81 ~~~dg~i~i~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~----- 151 (261)
++.||.|++||+..+..... ..........+...|.+++|+|+ +++|++++.|+.|++||+++++.+..+.
T Consensus 77 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 156 (351)
T 3f3f_A 77 ASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM 156 (351)
T ss_dssp EETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE
T ss_pred EcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc
Confidence 99999999999987643110 00111222346789999999999 9999999999999999998765432211
Q ss_pred --------ccCCceeEEEEcCC---CCEEEEecCCCcEEEEEccCCcE--EEEEeecCCCceEEEEEecCC----CcceE
Q 024868 152 --------KAHKSVLDMDFSLD---SEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDG----TKPFL 214 (261)
Q Consensus 152 --------~~~~~v~~~~~s~~---~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~p~~----~~~~~ 214 (261)
.+...+.+++|+|+ +.++++++.++.+.+|+...++. +..+..|.. .|++++|+|++ ++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~~p~~~~~~~~--- 232 (351)
T 3f3f_A 157 KVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWAPSIGRWYQL--- 232 (351)
T ss_dssp ESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCS-CEEEEEECCCSSCSSEE---
T ss_pred cccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCc-ceeEEEECCCCCCcceE---
Confidence 34567999999997 89999999999998888877765 555555544 69999999998 55
Q ss_pred EEEEeeCCCcEEEEEECCCC----------------------------------------------eEEeeeeccCcCee
Q 024868 215 FCTVQRGDKALLAVYDISTW----------------------------------------------NKIGHKRLLRKPAS 248 (261)
Q Consensus 215 ~~~~~~~~d~~i~~~d~~~~----------------------------------------------~~~~~~~~~~~~v~ 248 (261)
+++++.||.|++||++++ +.+..+..|...|.
T Consensus 233 --l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 310 (351)
T 3f3f_A 233 --IATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVW 310 (351)
T ss_dssp --EEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEE
T ss_pred --EEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEE
Confidence 688999999999999864 45566677889999
Q ss_pred EEEEeeCCCEEeC
Q 024868 249 VLSISLDGKYLAM 261 (261)
Q Consensus 249 ~~~~s~dg~~la~ 261 (261)
+++|+|+|++|++
T Consensus 311 ~~~~s~~~~~l~s 323 (351)
T 3f3f_A 311 SVSWNLTGTILSS 323 (351)
T ss_dssp EEEECSSSCCEEE
T ss_pred EEEEcCCCCEEEE
Confidence 9999999998874
No 59
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=6.1e-34 Score=227.20 Aligned_cols=236 Identities=10% Similarity=0.093 Sum_probs=183.5
Q ss_pred eEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC-CCCeEEEEecCCc
Q 024868 8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTTNGG 86 (261)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~ 86 (261)
.+++++|+ ...+++.++.++ .|..|+....... ......+.+|.+.|.+++|+| ++++|++++.||.
T Consensus 38 ~~~~~~~~--~~~~~~~~~~~g--------~i~v~~~~~~~~~--~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~ 105 (402)
T 2aq5_A 38 GFCAVNPK--FMALICEASGGG--------AFLVLPLGKTGRV--DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCT 105 (402)
T ss_dssp CSEEECSS--EEEEEBCCSSSC--------CEEEEETTCCEEC--CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSE
T ss_pred CcEEECCC--eEEEEEEEcCCC--------EEEEEECccCCCC--CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCe
Confidence 34566653 244555677778 7777776443211 011234778999999999999 9999999999999
Q ss_pred EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCCeEEEEEccCceEEeec--cccCCceeEEEEc
Q 024868 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDE--PKAHKSVLDMDFS 163 (261)
Q Consensus 87 i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~v~~~~~s 163 (261)
|++|++.++...............|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+ ..|...|.+++|+
T Consensus 106 v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 185 (402)
T 2aq5_A 106 VMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185 (402)
T ss_dssp EEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEEC
T ss_pred EEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEEC
Confidence 99999988743111101111222467899999999998 69999999999999999999887777 6677899999999
Q ss_pred CCCCEEEEecCCCcEEEEEccCCcEEEEE-eecCCCceEEEEEecCCCcceEEEEEee---CCCcEEEEEECCCCeE-Ee
Q 024868 164 LDSEFLATTSTDGSARIWKTEDGVAWTFL-TRNSDEKIELCRFSKDGTKPFLFCTVQR---GDKALLAVYDISTWNK-IG 238 (261)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~~~~~~~~~---~~d~~i~~~d~~~~~~-~~ 238 (261)
|++++|++++.|+.|++||+++++.+..+ ..+....+.++.|+|++++ ++++ +.|+.|++||+++++. +.
T Consensus 186 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~g~~~~~d~~i~iwd~~~~~~~~~ 260 (402)
T 2aq5_A 186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKI-----LTTGFSRMSERQVALWDTKHLEEPLS 260 (402)
T ss_dssp TTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEE-----EEEEECTTCCEEEEEEETTBCSSCSE
T ss_pred CCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcE-----EEEeccCCCCceEEEEcCccccCCce
Confidence 99999999999999999999999999888 5565545899999999987 5666 7899999999998664 22
Q ss_pred eee-ccCcCeeEEEEeeCCCEEe
Q 024868 239 HKR-LLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 239 ~~~-~~~~~v~~~~~s~dg~~la 260 (261)
... .+...+.+++|+|++++|+
T Consensus 261 ~~~~~~~~~v~~~~~s~~~~~l~ 283 (402)
T 2aq5_A 261 LQELDTSSGVLLPFFDPDTNIVY 283 (402)
T ss_dssp EEECCCCSSCEEEEEETTTTEEE
T ss_pred EEeccCCCceeEEEEcCCCCEEE
Confidence 222 4567899999999999886
No 60
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-33 Score=224.91 Aligned_cols=233 Identities=15% Similarity=0.200 Sum_probs=183.6
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcC----CCCceecCCeEEeeec----------CCCCCceEE
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDP----KTTSVYTSPLVTYVFD----------ESEGDPMTI 69 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~----------~~~~~v~~~ 69 (261)
.++|++++|+|+. ..++++|+.++ .+..|+. .+............+. +|.+.|.++
T Consensus 45 ~~~v~~~~~s~~~--~~~l~~~~~dg--------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (425)
T 1r5m_A 45 LDNIVSSTWNPLD--ESILAYGEKNS--------VARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCL 114 (425)
T ss_dssp CSCCSEEEECSSC--TTEEEEEETBT--------EEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEE
T ss_pred cCceEEEEECCCC--CcEEEEecCCc--------eEEEEEEecccCCccccccccccccccccccccccccCCCCceEEE
Confidence 3689999999962 33899999888 7777777 5544100000111222 267799999
Q ss_pred EECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee
Q 024868 70 AVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD 149 (261)
Q Consensus 70 ~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 149 (261)
+|+|++++|++++.||.|++||. ++... .....|...|.+++|+|++++|++++.|+.|++||+.+++....
T Consensus 115 ~~s~~~~~l~~~~~dg~i~i~~~-~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 186 (425)
T 1r5m_A 115 AWSHDGNSIVTGVENGELRLWNK-TGALL-------NVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQH 186 (425)
T ss_dssp EECTTSSEEEEEETTSCEEEEET-TSCEE-------EEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEeC-CCCee-------eeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE
Confidence 99999999999999999999993 33221 11223568899999999999999999999999999977654321
Q ss_pred --------------------------------------------------------ccccCCceeEEEEcCCCCEEEEec
Q 024868 150 --------------------------------------------------------EPKAHKSVLDMDFSLDSEFLATTS 173 (261)
Q Consensus 150 --------------------------------------------------------~~~~~~~v~~~~~s~~~~~l~~~~ 173 (261)
+..+...|.+++|+|++++|++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 266 (425)
T 1r5m_A 187 FELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS 266 (425)
T ss_dssp ECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred eeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEc
Confidence 123455789999999999999999
Q ss_pred CCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEe
Q 024868 174 TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS 253 (261)
Q Consensus 174 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 253 (261)
.|+.|++||+++++.+..+..+.. .+.+++|+|++ . +++++.|+.|++||+++++.+..+..+...+.+++|+
T Consensus 267 ~d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~-~-----l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s 339 (425)
T 1r5m_A 267 DDGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDD-K-----VISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRIS 339 (425)
T ss_dssp TTSCEEEECSSSBSCSEEECCCSS-CEEEEEEETTT-E-----EEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEEC
T ss_pred CCCEEEEEECCCCccceEecCCCc-cEEEEEECCCC-E-----EEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEc
Confidence 999999999999998888876655 69999999999 5 5888999999999999999988888889999999999
Q ss_pred eCCCEEeC
Q 024868 254 LDGKYLAM 261 (261)
Q Consensus 254 ~dg~~la~ 261 (261)
|++++|++
T Consensus 340 ~~~~~l~~ 347 (425)
T 1r5m_A 340 QDGQKYAV 347 (425)
T ss_dssp TTSSEEEE
T ss_pred CCCCEEEE
Confidence 99999874
No 61
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-33 Score=223.38 Aligned_cols=227 Identities=13% Similarity=0.154 Sum_probs=189.1
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
...+|++++|+|+ ..++++|+.++ .+..||..+... ...+.+|...|.+++| +++.|++++
T Consensus 133 ~~~~v~~v~~s~~---~~~l~~~~~dg--------~i~iwd~~~~~~------~~~~~~~~~~v~~~~~--~~~~l~~~~ 193 (401)
T 4aez_A 133 ESTYVASVKWSHD---GSFLSVGLGNG--------LVDIYDVESQTK------LRTMAGHQARVGCLSW--NRHVLSSGS 193 (401)
T ss_dssp TTCCEEEEEECTT---SSEEEEEETTS--------CEEEEETTTCCE------EEEECCCSSCEEEEEE--ETTEEEEEE
T ss_pred CCCCEEEEEECCC---CCEEEEECCCC--------eEEEEECcCCeE------EEEecCCCCceEEEEE--CCCEEEEEc
Confidence 3678999999995 56899999998 888888877654 5567799999999999 567999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 162 (261)
.||.|++||+........ ....|...|.+++|+|++++|++++.|+.|++||+++++....+..+...|.+++|
T Consensus 194 ~dg~i~i~d~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~ 267 (401)
T 4aez_A 194 RSGAIHHHDVRIANHQIG------TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAW 267 (401)
T ss_dssp TTSEEEEEETTSSSCEEE------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEE
T ss_pred CCCCEEEEecccCcceee------EEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEE
Confidence 999999999985443221 12235689999999999999999999999999999998888777788889999999
Q ss_pred cCCCC-EEEEec--CCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEe--eCCCcEEEEEECCCCeEE
Q 024868 163 SLDSE-FLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ--RGDKALLAVYDISTWNKI 237 (261)
Q Consensus 163 s~~~~-~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~--~~~d~~i~~~d~~~~~~~ 237 (261)
+|++. ++++++ .|+.|++||+++++++..+.. ...+.+++|+|++++ +++ ++.||.|++||+++++..
T Consensus 268 ~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~--~~~v~~~~~s~~~~~-----l~~~~g~~dg~i~v~~~~~~~~~ 340 (401)
T 4aez_A 268 CPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA--GSQVTSLIWSPHSKE-----IMSTHGFPDNNLSIWSYSSSGLT 340 (401)
T ss_dssp CTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC--SSCEEEEEECSSSSE-----EEEEECTTTCEEEEEEEETTEEE
T ss_pred CCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC--CCcEEEEEECCCCCe-----EEEEeecCCCcEEEEecCCccce
Confidence 99765 555654 799999999999999888863 336999999999998 344 668999999999987654
Q ss_pred e--eeeccCcCeeEEEEeeCCCEEeC
Q 024868 238 G--HKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 238 ~--~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
. .+..|...|.+++|+|||++|++
T Consensus 341 ~~~~~~~h~~~v~~~~~s~dg~~l~s 366 (401)
T 4aez_A 341 KQVDIPAHDTRVLYSALSPDGRILST 366 (401)
T ss_dssp EEEEEECCSSCCCEEEECTTSSEEEE
T ss_pred eEEEecCCCCCEEEEEECCCCCEEEE
Confidence 3 35678899999999999999874
No 62
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.6e-33 Score=222.12 Aligned_cols=229 Identities=17% Similarity=0.097 Sum_probs=179.2
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
..++|.+++|+|+ +..++++++.++ .+..||..+... ........|...|.+++|+|++++|++++
T Consensus 117 h~~~v~~~~~~~~--~~~~l~s~~~d~--------~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 182 (383)
T 3ei3_B 117 PGDAITGMKFNQF--NTNQLFVSSIRG--------ATTLRDFSGSVI----QVFAKTDSWDYWYCCVDVSVSRQMLATGD 182 (383)
T ss_dssp TTCBEEEEEEETT--EEEEEEEEETTT--------EEEEEETTSCEE----EEEECCCCSSCCEEEEEEETTTTEEEEEE
T ss_pred cCCceeEEEeCCC--CCCEEEEEeCCC--------EEEEEECCCCce----EEEeccCCCCCCeEEEEECCCCCEEEEEC
Confidence 4689999999983 257899999999 888898876442 11122234457899999999999999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCc-EEEEeccCCeEEEEEccC----ceEEeeccccCCce
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPS----LRIILDEPKAHKSV 157 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~~d~~~----~~~~~~~~~~~~~v 157 (261)
.|+.|++||+..... .....|...|.+++|+|+++ ++++++.|+.|++||+++ +..+.. ..+...|
T Consensus 183 ~d~~i~i~d~~~~~~--------~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~v 253 (383)
T 3ei3_B 183 STGRLLLLGLDGHEI--------FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE-MPHEKPV 253 (383)
T ss_dssp TTSEEEEEETTSCEE--------EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE-EECSSCE
T ss_pred CCCCEEEEECCCCEE--------EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE-ecCCCce
Confidence 999999999843221 11224568999999999998 899999999999999987 444433 3677899
Q ss_pred eEEEEcC-CCCEEEEecCCCcEEEEEccCCcEEEEEeecC------CC----------ceEEEEEecCCCcceEEEEEee
Q 024868 158 LDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNS------DE----------KIELCRFSKDGTKPFLFCTVQR 220 (261)
Q Consensus 158 ~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------~~----------~v~~~~~~p~~~~~~~~~~~~~ 220 (261)
.+++|+| ++++|++++.|+.|++||+++++....+..+. .. .+..++|+|+++ + ++
T Consensus 254 ~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~------~-s~ 326 (383)
T 3ei3_B 254 NAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ------L-LL 326 (383)
T ss_dssp EEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTT------T-CT
T ss_pred EEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcc------c-cc
Confidence 9999999 99999999999999999999888766665442 11 233355555554 2 67
Q ss_pred CCCcEEEEEECCCCeEEeeeec--cCcCeeEEEEeeCCCEEeC
Q 024868 221 GDKALLAVYDISTWNKIGHKRL--LRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 221 ~~d~~i~~~d~~~~~~~~~~~~--~~~~v~~~~~s~dg~~la~ 261 (261)
+.|+.|++||+++++.+..+.. +...+..++|+|||++||+
T Consensus 327 s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s 369 (383)
T 3ei3_B 327 NDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLAS 369 (383)
T ss_dssp TCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEE
T ss_pred CCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEE
Confidence 7899999999999998887776 4467778899999999874
No 63
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.9e-33 Score=221.82 Aligned_cols=213 Identities=17% Similarity=0.235 Sum_probs=173.3
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC-CCCeEEEEe
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCST 82 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 82 (261)
..+|++++|+|+. ..++++|+.++ .|..||..+... .......+|...|.+++|+| ++++|++++
T Consensus 73 ~~~v~~~~~~~~~--~~~l~s~~~dg--------~i~iwd~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 138 (383)
T 3ei3_B 73 DRRVTSLEWHPTH--PTTVAVGSKGG--------DIILWDYDVQNK----TSFIQGMGPGDAITGMKFNQFNTNQLFVSS 138 (383)
T ss_dssp SSCEEEEEECSSC--TTEEEEEEBTS--------CEEEEETTSTTC----EEEECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred CCCEEEEEECCCC--CCEEEEEcCCC--------eEEEEeCCCccc----ceeeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence 5789999999962 37999999999 788888876553 22333457999999999999 789999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 162 (261)
.|+.|++||+.+... . .......+...|.+++|+|++++|++++.|+.|++||+ +++.+..+..|...|.+++|
T Consensus 139 ~d~~i~iwd~~~~~~--~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~ 212 (383)
T 3ei3_B 139 IRGATTLRDFSGSVI--Q---VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEF 212 (383)
T ss_dssp TTTEEEEEETTSCEE--E---EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEE
T ss_pred CCCEEEEEECCCCce--E---EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEE
Confidence 999999999986332 1 11122234578999999999999999999999999998 56666777778889999999
Q ss_pred cCCCC-EEEEecCCCcEEEEEccC----CcEEEEEeecCCCceEEEEEec-CCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868 163 SLDSE-FLATTSTDGSARIWKTED----GVAWTFLTRNSDEKIELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (261)
Q Consensus 163 s~~~~-~l~~~~~d~~i~iwd~~~----~~~~~~~~~~~~~~v~~~~~~p-~~~~~~~~~~~~~~~d~~i~~~d~~~~~~ 236 (261)
+|+++ ++++++.|+.|++||+++ ++++..+ .+ ...|.+++|+| ++++ +++++.|+.|++||+++++.
T Consensus 213 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~-~~~v~~~~~s~~~~~~-----l~~~~~d~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 213 NPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PH-EKPVNAAYFNPTDSTK-----LLTTDQRNEIRVYSSYDWSK 285 (383)
T ss_dssp CSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-EC-SSCEEEEEECTTTSCE-----EEEEESSSEEEEEETTBTTS
T ss_pred CCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cC-CCceEEEEEcCCCCCE-----EEEEcCCCcEEEEECCCCcc
Confidence 99999 899999999999999997 6666666 34 44699999999 9998 68889999999999998876
Q ss_pred Eeeeecc
Q 024868 237 IGHKRLL 243 (261)
Q Consensus 237 ~~~~~~~ 243 (261)
+..+..+
T Consensus 286 ~~~~~~~ 292 (383)
T 3ei3_B 286 PDQIIIH 292 (383)
T ss_dssp CSEEEEC
T ss_pred ccccccc
Confidence 5555433
No 64
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6.9e-33 Score=222.35 Aligned_cols=235 Identities=15% Similarity=0.183 Sum_probs=185.8
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
+...+++|++ .++|++|. ++ .|+.||..++++ .....+.+|...|++++|+|+|++|++|+.|
T Consensus 106 ~y~~~l~wS~----~n~lAvgl-d~--------tV~lWd~~tg~~----~~~~~~~~~~~~V~sv~fspdg~~lasgs~D 168 (420)
T 4gga_A 106 YYLNLVDWSS----GNVLAVAL-DN--------SVYLWSASSGDI----LQLLQMEQPGEYISSVAWIKEGNYLAVGTSS 168 (420)
T ss_dssp TTCBCEEECT----TSEEEEEE-TT--------EEEEEETTTCCE----EEEEECCSTTCCEEEEEECTTSSEEEEEETT
T ss_pred ccceeEEECC----CCEEEEEe-CC--------EEEEEECCCCCE----EEEEEecCCCCcEEEEEECCCCCEEEEEECC
Confidence 3456789986 45788774 77 899999988775 2234556788899999999999999999999
Q ss_pred CcEEEEEEeCCccccceee----------------------------------eeCCCCCCCCCeEEEEEeeCCcEEEEe
Q 024868 85 GGCKLFEVYGGATDINLLA----------------------------------KKMPPLQDAGPQKCLSFSVDGSRFAAG 130 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~ 130 (261)
|.|++||+.+++....... .......|...+..+.|+|++++++++
T Consensus 169 g~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~ 248 (420)
T 4gga_A 169 AEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 248 (420)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred CeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeee
Confidence 9999999987654211100 000112345788999999999999999
Q ss_pred ccCCeEEEEEccCceE----EeeccccCCceeEEEEcCCCC-EEEE--ecCCCcEEEEEccCCcEEEEEeecCCCceEEE
Q 024868 131 GVDGHLRIMHWPSLRI----ILDEPKAHKSVLDMDFSLDSE-FLAT--TSTDGSARIWKTEDGVAWTFLTRNSDEKIELC 203 (261)
Q Consensus 131 ~~d~~i~~~d~~~~~~----~~~~~~~~~~v~~~~~s~~~~-~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~ 203 (261)
+.|+.+++|+..+++. +.....+...|.+++|+|++. ++++ ++.|+.|++||+.++++...+..+. .+.++
T Consensus 249 ~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~--~v~~~ 326 (420)
T 4gga_A 249 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVCSI 326 (420)
T ss_dssp ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS--CEEEE
T ss_pred eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc--ceeee
Confidence 9999999999987653 234456667899999999655 5544 4679999999999999988887543 48999
Q ss_pred EEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 204 ~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
.|+|+++.++ ..++..|+.|++||+++++++..+.+|...|.+++|+|||++||+
T Consensus 327 ~~~~~~~~lv---~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S 381 (420)
T 4gga_A 327 LWSPHYKELI---SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 381 (420)
T ss_dssp EEETTTTEEE---EEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred eecCCCCeEE---EEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 9999999832 244568999999999999999999999999999999999999874
No 65
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9.3e-33 Score=221.34 Aligned_cols=232 Identities=15% Similarity=0.124 Sum_probs=184.2
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
..++|++++|+|+ ..++++|+.++ .|..||..+... ...+.+|...|.+++|+|++++|++++
T Consensus 138 h~~~v~~~~~~~~---~~~l~s~s~d~--------~i~iwd~~~~~~------~~~~~~h~~~v~~~~~~~~~~~l~s~~ 200 (420)
T 3vl1_A 138 HVSEITKLKFFPS---GEALISSSQDM--------QLKIWSVKDGSN------PRTLIGHRATVTDIAIIDRGRNVLSAS 200 (420)
T ss_dssp SSSCEEEEEECTT---SSEEEEEETTS--------EEEEEETTTCCC------CEEEECCSSCEEEEEEETTTTEEEEEE
T ss_pred ccCccEEEEECCC---CCEEEEEeCCC--------eEEEEeCCCCcC------ceEEcCCCCcEEEEEEcCCCCEEEEEc
Confidence 4678999999995 55899999999 899999877654 446788999999999999999999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCC-----------------CCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCce
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMP-----------------PLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR 145 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~-----------------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~ 145 (261)
.|+.|++||+.+++........... ...+...+.+++|+|++++|++++.||.|++||+++++
T Consensus 201 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 280 (420)
T 3vl1_A 201 LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE 280 (420)
T ss_dssp TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC
T ss_pred CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc
Confidence 9999999999877642222110000 00012455556678899999999999999999999988
Q ss_pred EEeeccc-cCCceeEEEEcCCCC-EEEEecCCCcEEEEEccCCc-EEEEEeecCCCceEEEEEecCCCcceEEEEEeeCC
Q 024868 146 IILDEPK-AHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD 222 (261)
Q Consensus 146 ~~~~~~~-~~~~v~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~ 222 (261)
....... +...+.+++|+|+++ +|++++.|+.|++||+++++ ++..+..++...+.++.| |++++ +++++.
T Consensus 281 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~-----l~s~~~ 354 (420)
T 3vl1_A 281 QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGAL-----FVSSGF 354 (420)
T ss_dssp EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEE-----EEEETT
T ss_pred eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCE-----EEEecC
Confidence 7766655 456899999999999 99999999999999999875 477787767767888855 57776 689999
Q ss_pred CcEEEEEECCCCeE---------EeeeeccCcCeeEEEEeeCCC
Q 024868 223 KALLAVYDISTWNK---------IGHKRLLRKPASVLSISLDGK 257 (261)
Q Consensus 223 d~~i~~~d~~~~~~---------~~~~~~~~~~v~~~~~s~dg~ 257 (261)
|+.|++||+...+. ......+...+.+++|+||++
T Consensus 355 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 398 (420)
T 3vl1_A 355 DTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDE 398 (420)
T ss_dssp TEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSS
T ss_pred CccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCC
Confidence 99999999876321 123445678899999999998
No 66
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=9.9e-34 Score=222.05 Aligned_cols=235 Identities=12% Similarity=0.179 Sum_probs=186.7
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCc-eecCCeEEeeecCCCCCceEEE------ECCCCC
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS-VYTSPLVTYVFDESEGDPMTIA------VNPSGD 76 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~------~~~~~~ 76 (261)
..+|.+++|+|+..+..++++|+.++ .+..||..+.. . ...+.+|...|.+++ |+|+++
T Consensus 65 ~~~v~~~~~~~~~~~~~~l~~~~~dg--------~i~iwd~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~s~~~~ 130 (357)
T 3i2n_A 65 AKPIKCGTFGATSLQQRYLATGDFGG--------NLHIWNLEAPEMP------VYSVKGHKEIINAIDGIGGLGIGEGAP 130 (357)
T ss_dssp SSCEEEEECTTCCTTTCCEEEEETTS--------CEEEECTTSCSSC------SEEECCCSSCEEEEEEESGGGCC-CCC
T ss_pred cCcEEEEEEcCCCCCCceEEEecCCC--------eEEEEeCCCCCcc------EEEEEecccceEEEeeccccccCCCcc
Confidence 56899999999632357899999999 88888887654 2 345778999999995 578999
Q ss_pred eEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEE----EeeCCcEEEEeccCCeEEEEEccCceEEeeccc
Q 024868 77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLS----FSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK 152 (261)
Q Consensus 77 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 152 (261)
.|++++.||.|++||+............ ..-.....+.+++ |+|+++++++++.|+.|++||+++++.. ....
T Consensus 131 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~ 207 (357)
T 3i2n_A 131 EIVTGSRDGTVKVWDPRQKDDPVANMEP--VQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR-WETN 207 (357)
T ss_dssp EEEEEETTSCEEEECTTSCSSCSEEECC--CTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE-EEEE
T ss_pred EEEEEeCCCeEEEEeCCCCCCcceeccc--cCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee-eecC
Confidence 9999999999999999887632222111 1111234788888 7889999999999999999999988874 3456
Q ss_pred cCCceeEEEEcC---CCCEEEEecCCCcEEEEEccCCcEEEEEe-----ecCCCceEEEEEecCCCcceEEEEEeeCCCc
Q 024868 153 AHKSVLDMDFSL---DSEFLATTSTDGSARIWKTEDGVAWTFLT-----RNSDEKIELCRFSKDGTKPFLFCTVQRGDKA 224 (261)
Q Consensus 153 ~~~~v~~~~~s~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~ 224 (261)
+...+.+++|+| +++++++++.|+.|++||++++++...+. .|. ..|.+++|+|+++.+ +++++.||
T Consensus 208 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~----l~~~~~dg 282 (357)
T 3i2n_A 208 IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHK-STVWQVRHLPQNREL----FLTAGGAG 282 (357)
T ss_dssp CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCS-SCEEEEEEETTEEEE----EEEEETTS
T ss_pred CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCc-CCEEEEEECCCCCcE----EEEEeCCC
Confidence 677899999999 99999999999999999998776544443 454 469999999999832 68899999
Q ss_pred EEEEEECCCC-------------------eEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 225 LLAVYDISTW-------------------NKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 225 ~i~~~d~~~~-------------------~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
.|++||++++ +.+..+..|...|.+++|+|+|++|+
T Consensus 283 ~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 337 (357)
T 3i2n_A 283 GLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLC 337 (357)
T ss_dssp EEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEE
T ss_pred cEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEE
Confidence 9999999754 35566778889999999999999886
No 67
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-34 Score=228.11 Aligned_cols=242 Identities=14% Similarity=0.193 Sum_probs=188.8
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceec---CCeEEeeecCCCCCceEEEECCC-CCeE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT---SPLVTYVFDESEGDPMTIAVNPS-GDDF 78 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~-~~~l 78 (261)
..++|.+++|+|+ +..++++|+.++ .|..||..+..... .......+..|...|.+++|+|+ +.+|
T Consensus 112 h~~~v~~~~~~~~--~~~~l~s~~~dg--------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 181 (416)
T 2pm9_A 112 HSSSVKTVKFNAK--QDNVLASGGNNG--------EIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVF 181 (416)
T ss_dssp SSSCCCEEEECSS--STTBEEEECSSS--------CEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEE
T ss_pred CccceEEEEEcCC--CCCEEEEEcCCC--------eEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEE
Confidence 3578999999986 256899999999 88888887654110 01111234678899999999998 7899
Q ss_pred EEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCC---eEEEEEccCc-eEEeecc-c
Q 024868 79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDG---HLRIMHWPSL-RIILDEP-K 152 (261)
Q Consensus 79 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~---~i~~~d~~~~-~~~~~~~-~ 152 (261)
++++.|+.|++||+.+.+...... .......+...+.+++|+|++ .++++++.|+ .|++||++++ .....+. .
T Consensus 182 ~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~ 260 (416)
T 2pm9_A 182 ASAGSSNFASIWDLKAKKEVIHLS-YTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG 260 (416)
T ss_dssp EEESSSSCEEEEETTTTEEEEEEC-CCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC
T ss_pred EEEcCCCCEEEEECCCCCcceEEe-ccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC
Confidence 999999999999998876422211 111111226789999999997 6899999998 9999999986 4444444 5
Q ss_pred cCCceeEEEEcC-CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCC-CcceEEEEEeeCCCcEEEEEE
Q 024868 153 AHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG-TKPFLFCTVQRGDKALLAVYD 230 (261)
Q Consensus 153 ~~~~v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~~~~~~~~~~~d~~i~~~d 230 (261)
|...|.+++|+| ++++|++++.|+.|++||+++++++..+..|.. .|.+++|+|++ ++ +++++.|+.|++||
T Consensus 261 ~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~-----l~s~~~d~~i~iw~ 334 (416)
T 2pm9_A 261 HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN-WCFKTKFAPEAPDL-----FACASFDNKIEVQT 334 (416)
T ss_dssp CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS-CCCCEEECTTCTTE-----EEECCSSSEEEEEE
T ss_pred ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC-ceEEEEECCCCCCE-----EEEEecCCcEEEEE
Confidence 777999999999 999999999999999999999999999987765 69999999999 55 68999999999999
Q ss_pred CCCCeEEeeeec-----------------------------------cCcCeeEEEEeeCCCEEeC
Q 024868 231 ISTWNKIGHKRL-----------------------------------LRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 231 ~~~~~~~~~~~~-----------------------------------~~~~v~~~~~s~dg~~la~ 261 (261)
+.+++....... +..++.+++|+|||++||+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~ 400 (416)
T 2pm9_A 335 LQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQI 400 (416)
T ss_dssp SCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECB
T ss_pred ccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEE
Confidence 987653321111 4567779999999999974
No 68
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-32 Score=209.26 Aligned_cols=230 Identities=8% Similarity=0.029 Sum_probs=188.5
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
..++|.+++| |+ ..++++|+.++ .+..||..+... ...+..|...|.+++|+|++++|++++
T Consensus 17 h~~~v~~~~~-~~---~~~l~s~~~dg--------~v~vw~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~ 78 (313)
T 3odt_A 17 HDQDVRDVVA-VD---DSKVASVSRDG--------TVRLWSKDDQWL------GTVVYTGQGFLNSVCYDSEKELLLFGG 78 (313)
T ss_dssp CSSCEEEEEE-EE---TTEEEEEETTS--------EEEEEEESSSEE------EEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred CCCCcEEEEe-cC---CCEEEEEEcCC--------cEEEEECCCCEE------EEEeecCCccEEEEEECCCCCEEEEec
Confidence 3679999999 65 55799999999 888888876654 556778899999999999999999999
Q ss_pred cCCcEEEEEEeCCccccc--eee--------------------------------eeCCCCCCCCCeEEEEEee-CCcEE
Q 024868 83 TNGGCKLFEVYGGATDIN--LLA--------------------------------KKMPPLQDAGPQKCLSFSV-DGSRF 127 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~--~~~--------------------------------~~~~~~~~~~~v~~~~~s~-~~~~l 127 (261)
.|+.+++|++........ .+. .......+...+.++.|+| +++++
T Consensus 79 ~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l 158 (313)
T 3odt_A 79 KDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKF 158 (313)
T ss_dssp TTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred CCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEE
Confidence 999999999876431000 000 0001123467888999998 89999
Q ss_pred EEeccCCeEEEEEccCceEEeeccc-cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEe
Q 024868 128 AAGGVDGHLRIMHWPSLRIILDEPK-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS 206 (261)
Q Consensus 128 ~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 206 (261)
++++.|+.|++||. .+....+.. +...+.+++|+|++. +++++.|+.|++||+++++++..+..|.. .+.+++|+
T Consensus 159 ~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~ 234 (313)
T 3odt_A 159 LTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES-FVYCIKLL 234 (313)
T ss_dssp EEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEC
T ss_pred EEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCc-eEEEEEEe
Confidence 99999999999993 344444444 667899999999998 89999999999999999999999987765 69999999
Q ss_pred cCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 207 p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
|+++ +++++.|+.|++||+++++.+..+..+...+.+++|+|+|++++
T Consensus 235 ~~~~------l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 282 (313)
T 3odt_A 235 PNGD------IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIV 282 (313)
T ss_dssp TTSC------EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEE
T ss_pred cCCC------EEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEE
Confidence 9994 47889999999999999999888888989999999999999764
No 69
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=7e-33 Score=218.26 Aligned_cols=201 Identities=13% Similarity=0.114 Sum_probs=158.0
Q ss_pred eeeEEEEEeeCCcceE-EEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 6 TVTCGSWIKRPENVNL-VVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
.+.+++|+|+. ..+ +++|+.++ .|..||..+... ...+ .|...|.+++|+|||+++++++.+
T Consensus 135 ~~~~v~fSpDg--~~la~as~~~d~--------~i~iwd~~~~~~------~~~~-~~~~~V~~v~fspdg~~l~s~s~~ 197 (365)
T 4h5i_A 135 YTKLVYISREG--TVAAIASSKVPA--------IMRIIDPSDLTE------KFEI-ETRGEVKDLHFSTDGKVVAYITGS 197 (365)
T ss_dssp CEEEEEECTTS--SCEEEEESCSSC--------EEEEEETTTTEE------EEEE-ECSSCCCEEEECTTSSEEEEECSS
T ss_pred CEEEEEEcCCC--CEEEEEECCCCC--------EEEEeECCCCcE------EEEe-CCCCceEEEEEccCCceEEeccce
Confidence 47889999963 222 34555677 889999888764 3344 377889999999999999998755
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC----eEEEEEccCceE----EeeccccCCc
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG----HLRIMHWPSLRI----ILDEPKAHKS 156 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~----~i~~~d~~~~~~----~~~~~~~~~~ 156 (261)
+ +++|+..++..... .....+...+.+++|+|+++++++++.|+ .+++|++..... ...+..+...
T Consensus 198 ~-~~~~~~~~~~~~~~-----~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 271 (365)
T 4h5i_A 198 S-LEVISTVTGSCIAR-----KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKG 271 (365)
T ss_dssp C-EEEEETTTCCEEEE-----ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSC
T ss_pred e-EEEEEeccCcceee-----eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCC
Confidence 4 77777766653211 12234566799999999999999998776 688898876543 2334566678
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868 157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (261)
Q Consensus 157 v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~ 234 (261)
|.+++|+|||++||+++.|+.|+|||+++++++..+...+..+|++++|+|||++ +++++.|++|+|||+...
T Consensus 272 V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~-----laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 272 ITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTY-----VASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCE-----EEEEETTSEEEEEECCTT
T ss_pred eEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCE-----EEEEeCCCeEEEEEcCCC
Confidence 9999999999999999999999999999999998875434447999999999998 799999999999999643
No 70
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.9e-32 Score=215.93 Aligned_cols=234 Identities=13% Similarity=0.086 Sum_probs=188.2
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
...+|.+++|+|+ ..++++++.++ .+..||..+... .....+..|...|.+++|+|++++|++++
T Consensus 51 h~~~v~~~~~~~~---~~~l~~~~~dg--------~i~vwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 115 (372)
T 1k8k_C 51 HNGQVTGVDWAPD---SNRIVTCGTDR--------NAYVWTLKGRTW----KPTLVILRINRAARCVRWAPNEKKFAVGS 115 (372)
T ss_dssp CSSCEEEEEEETT---TTEEEEEETTS--------CEEEEEEETTEE----EEEEECCCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCcccEEEEeCC---CCEEEEEcCCC--------eEEEEECCCCee----eeeEEeecCCCceeEEEECCCCCEEEEEe
Confidence 3578999999985 56888998888 777777766543 22344577889999999999999999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEcc------------------Cc
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP------------------SL 144 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~------------------~~ 144 (261)
.|+.+++||+.......... .....+...|.+++|+|++++|++++.|+.|++||++ .+
T Consensus 116 ~d~~v~i~d~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 192 (372)
T 1k8k_C 116 GSRVISICYFEQENDWWVCK---HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFG 192 (372)
T ss_dssp TTSSEEEEEEETTTTEEEEE---EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTT
T ss_pred CCCEEEEEEecCCCcceeee---eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchh
Confidence 99999999998875311111 1123456889999999999999999999999999953 56
Q ss_pred eEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCc
Q 024868 145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA 224 (261)
Q Consensus 145 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~ 224 (261)
+.+..+..+...+.+++|+|++++|++++.|+.|++||+++++++..+..+.. ++.+++|+|++++ ++++ .|+
T Consensus 193 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~-----l~~~-~d~ 265 (372)
T 1k8k_C 193 ELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL-PLLAVTFITESSL-----VAAG-HDC 265 (372)
T ss_dssp CEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEE-----EEEE-TTS
T ss_pred hheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCC-CeEEEEEecCCCE-----EEEE-eCC
Confidence 66666777778999999999999999999999999999999999999987655 6999999999986 4555 899
Q ss_pred EEEEEECCC--CeE--E------------------------------------eee-eccCcCeeEEEEe-eCC---CEE
Q 024868 225 LLAVYDIST--WNK--I------------------------------------GHK-RLLRKPASVLSIS-LDG---KYL 259 (261)
Q Consensus 225 ~i~~~d~~~--~~~--~------------------------------------~~~-~~~~~~v~~~~~s-~dg---~~l 259 (261)
.|++||+++ ++. + ..+ ..|...|.+++|. ++| ++|
T Consensus 266 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l 345 (372)
T 1k8k_C 266 FPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQF 345 (372)
T ss_dssp SCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEE
T ss_pred eEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeE
Confidence 999999987 421 0 122 3788899999977 566 888
Q ss_pred eC
Q 024868 260 AM 261 (261)
Q Consensus 260 a~ 261 (261)
++
T Consensus 346 ~s 347 (372)
T 1k8k_C 346 CT 347 (372)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 71
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.2e-32 Score=214.76 Aligned_cols=223 Identities=12% Similarity=0.144 Sum_probs=188.6
Q ss_pred CCceeeEEEEEeeCCcce-EEEEecCCCCCCCCCceEEEEEcC-CCCceecCCeEEeeecC--CCCCceEEEECCCCCeE
Q 024868 3 GGGTVTCGSWIKRPENVN-LVVLGKSSRASSSPSVLEIFSFDP-KTTSVYTSPLVTYVFDE--SEGDPMTIAVNPSGDDF 78 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l 78 (261)
...+|.+++|+|+ .. ++++|+.++ .|..||. .+.. ...+.+ |...|.+++|+| ++.|
T Consensus 55 ~~~~v~~~~~~~~---~~~~l~~~~~dg--------~i~~wd~~~~~~-------~~~~~~~~~~~~v~~l~~~~-~~~l 115 (342)
T 1yfq_A 55 YKHPLLCCNFIDN---TDLQIYVGTVQG--------EILKVDLIGSPS-------FQALTNNEANLGICRICKYG-DDKL 115 (342)
T ss_dssp CSSCEEEEEEEES---SSEEEEEEETTS--------CEEEECSSSSSS-------EEECBSCCCCSCEEEEEEET-TTEE
T ss_pred cCCceEEEEECCC---CCcEEEEEcCCC--------eEEEEEeccCCc-------eEeccccCCCCceEEEEeCC-CCEE
Confidence 3578999999995 56 888999998 8888988 7665 345777 999999999999 9999
Q ss_pred EEEecCCcEEEEEEeC---------CccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC-ceE--
Q 024868 79 VCSTTNGGCKLFEVYG---------GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-LRI-- 146 (261)
Q Consensus 79 ~~~~~dg~i~i~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~-~~~-- 146 (261)
++++.|+.|++||+.+ ... ...+.+...+.+++|+|++ +++++.|+.|++||+++ +..
T Consensus 116 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~ 185 (342)
T 1yfq_A 116 IAASWDGLIEVIDPRNYGDGVIAVKNLN--------SNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNG 185 (342)
T ss_dssp EEEETTSEEEEECHHHHTTBCEEEEESC--------SSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCC
T ss_pred EEEcCCCeEEEEcccccccccccccCCe--------eeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccc
Confidence 9999999999999986 332 3344577899999999987 88889999999999987 442
Q ss_pred EeeccccCCceeEEEEcC-CCCEEEEecCCCcEEEEEccCC------cEEEEEeecCC--------CceEEEEEecCCCc
Q 024868 147 ILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDG------VAWTFLTRNSD--------EKIELCRFSKDGTK 211 (261)
Q Consensus 147 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~--------~~v~~~~~~p~~~~ 211 (261)
......+...+.+++|+| +++++++++.|+.+++|+++.. +....+..+.. ..|.+++|+|++++
T Consensus 186 ~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 265 (342)
T 1yfq_A 186 TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF 265 (342)
T ss_dssp EEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCC
T ss_pred eeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCE
Confidence 223345566899999999 9999999999999999999876 77777776542 26999999999998
Q ss_pred ceEEEEEeeCCCcEEEEEECCCCeEEeeeecc-CcCeeEEEEeeCCCEEeC
Q 024868 212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGKYLAM 261 (261)
Q Consensus 212 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~s~dg~~la~ 261 (261)
+++++.||.|++||+++++.+..+..| ...|.+++ |+|++|++
T Consensus 266 -----l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s 309 (342)
T 1yfq_A 266 -----LYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCL 309 (342)
T ss_dssp -----EEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEE
T ss_pred -----EEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEE
Confidence 688999999999999999998888888 89999999 99999874
No 72
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-34 Score=229.01 Aligned_cols=236 Identities=15% Similarity=0.121 Sum_probs=182.5
Q ss_pred CceeeEEEEEe-eCCcceEEEEecCCCCCCCCCceEEEEEcCCC---CceecCCeEEeeecCCCCCceEEEECCCCCeEE
Q 024868 4 GGTVTCGSWIK-RPENVNLVVLGKSSRASSSPSVLEIFSFDPKT---TSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV 79 (261)
Q Consensus 4 ~~~v~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 79 (261)
.++|++++|+| + ..++++|+.|+ .|..||..+ ... ... ...+ .|...|.+++|+|++++|+
T Consensus 63 ~~~V~~~~~s~~~---~~~l~s~s~dg--------~v~vwd~~~~~~~~~-~~~--~~~~-~h~~~v~~~~~~~~~~~l~ 127 (437)
T 3gre_A 63 PNSITSSAVSPGE---TPYLITGSDQG--------VIKIWNLKEIIVGEV-YSS--SLTY-DCSSTVTQITMIPNFDAFA 127 (437)
T ss_dssp TSCEEEEEEECSS---SCEEEEEETTS--------EEEEEEHHHHHTTCC-CSC--SEEE-ECSSCEEEEEECTTSSEEE
T ss_pred CCceEEEEECCCC---CCEEEEecCCc--------eEEEeECcccccCcc-cce--eeec-cCCCCEEEEEEeCCCCEEE
Confidence 58999999999 5 56899999999 888887654 221 011 1122 4899999999999999999
Q ss_pred EEecCCcEEEEEEe---CCccccceeeeeC---CCCC--CCCCeEEEE--EeeCCcEEEEeccCCeEEEEEccCceEEee
Q 024868 80 CSTTNGGCKLFEVY---GGATDINLLAKKM---PPLQ--DAGPQKCLS--FSVDGSRFAAGGVDGHLRIMHWPSLRIILD 149 (261)
Q Consensus 80 ~~~~dg~i~i~~~~---~~~~~~~~~~~~~---~~~~--~~~~v~~~~--~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 149 (261)
+++.||.|++||+. .+........... .... +...+.++. +++++++|++++.|+.|++||+++++.+..
T Consensus 128 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 207 (437)
T 3gre_A 128 VSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQI 207 (437)
T ss_dssp EEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEE
Confidence 99999999999995 3332111110111 1111 456777777 567899999999999999999999988777
Q ss_pred ccc--cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEec----CCCcceEEEEEeeCCC
Q 024868 150 EPK--AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK----DGTKPFLFCTVQRGDK 223 (261)
Q Consensus 150 ~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p----~~~~~~~~~~~~~~~d 223 (261)
+.. |...|.+++|+|++++|++++.|+.|++||+++++++..+...+..+|.+++|+| ++++ +++++.|
T Consensus 208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~-----l~s~~~d 282 (437)
T 3gre_A 208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVI-----VVGGSSK 282 (437)
T ss_dssp EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEE-----EEEESTT
T ss_pred EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccE-----EEEEcCC
Confidence 766 6779999999999999999999999999999999999888643444799996665 5656 6899999
Q ss_pred cEEEEEECCCCeEEeeeecc--------------------------CcCeeEEEEeeCCCEEe
Q 024868 224 ALLAVYDISTWNKIGHKRLL--------------------------RKPASVLSISLDGKYLA 260 (261)
Q Consensus 224 ~~i~~~d~~~~~~~~~~~~~--------------------------~~~v~~~~~s~dg~~la 260 (261)
+.|++||+++++.+..+..+ ...|.+++|+ ++++|+
T Consensus 283 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~ 344 (437)
T 3gre_A 283 TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILL 344 (437)
T ss_dssp EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEE
T ss_pred CcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEE
Confidence 99999999999887666543 3457778888 666665
No 73
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-33 Score=225.23 Aligned_cols=190 Identities=10% Similarity=0.033 Sum_probs=157.1
Q ss_pred CCCCCceEEEECCCCCeE-EEEecCCcEEEEEEe--CCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEE
Q 024868 61 ESEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVY--GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR 137 (261)
Q Consensus 61 ~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 137 (261)
.|.+.|.+++|+|++++| ++++.||.|++||+. ++.....+. ...+...|.+++|+|++++|++++.++.++
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-----~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~ 174 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-----RFCFSKRPNAISIAEDDTTVIIADKFGDVY 174 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-----EEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-----cccCCCCceEEEEcCCCCEEEEEeCCCcEE
Confidence 456689999999999996 888899999999998 555422211 113457899999999999999999999999
Q ss_pred EEEccCceEEe----eccccCCceeEEEEcCC---CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCC
Q 024868 138 IMHWPSLRIIL----DEPKAHKSVLDMDFSLD---SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210 (261)
Q Consensus 138 ~~d~~~~~~~~----~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 210 (261)
+|++.+++... .+..|...|.+++|+|+ +++|++++.|+.|++||+++++.+..+...+...|.+++|+ +++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~ 253 (450)
T 2vdu_B 175 SIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDY 253 (450)
T ss_dssp EEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STT
T ss_pred EEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCC
Confidence 99998776533 45567778999999999 99999999999999999999998887553344579999999 999
Q ss_pred cceEEEEEeeCCCcEEEEEECCCCeEEeeeecc-------------------------CcCeeEEEEeeCCCEEeC
Q 024868 211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-------------------------RKPASVLSISLDGKYLAM 261 (261)
Q Consensus 211 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~-------------------------~~~v~~~~~s~dg~~la~ 261 (261)
+ +++++.|+.|++||+++++.+..+..+ ...+.+++|+|++++|++
T Consensus 254 ~-----l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 324 (450)
T 2vdu_B 254 L-----LLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAF 324 (450)
T ss_dssp E-----EEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEE
T ss_pred E-----EEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEE
Confidence 8 688999999999999999887666522 356889999999999874
No 74
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.2e-32 Score=236.04 Aligned_cols=226 Identities=17% Similarity=0.226 Sum_probs=196.8
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
..++|.+++|+|+ ..++++|+.++ .|..||..++.. ...+.+|.+.|.+++|+|++++|++++
T Consensus 54 ~~~~v~~~~~s~~---~~~l~~~~~dg--------~i~vw~~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~ 116 (814)
T 3mkq_A 54 TETPVRAGKFIAR---KNWIIVGSDDF--------RIRVFNYNTGEK------VVDFEAHPDYIRSIAVHPTKPYVLSGS 116 (814)
T ss_dssp CSSCEEEEEEEGG---GTEEEEEETTS--------EEEEEETTTCCE------EEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred CCCcEEEEEEeCC---CCEEEEEeCCC--------eEEEEECCCCcE------EEEEecCCCCEEEEEEeCCCCEEEEEc
Confidence 4678999999996 66899999999 889999877664 556788999999999999999999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeeccccC-CceeEE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDM 160 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~v~~~ 160 (261)
.||.|++|++.++..... ....|...|.+++|+| +++.+++++.||.|++||+.++........++ ..+..+
T Consensus 117 ~dg~i~vw~~~~~~~~~~------~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~ 190 (814)
T 3mkq_A 117 DDLTVKLWNWENNWALEQ------TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190 (814)
T ss_dssp TTSEEEEEEGGGTSEEEE------EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEE
T ss_pred CCCEEEEEECCCCceEEE------EEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEE
Confidence 999999999987633111 1123567899999999 89999999999999999998877665555555 689999
Q ss_pred EEcC--CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEe
Q 024868 161 DFSL--DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG 238 (261)
Q Consensus 161 ~~s~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~ 238 (261)
+|+| ++.++++++.|+.|++||+.+++++..+..|.. .+.+++|+|++++ +++++.||.|++||+.+++.+.
T Consensus 191 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~-----l~~~~~dg~v~vwd~~~~~~~~ 264 (814)
T 3mkq_A 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS-NVSFAVFHPTLPI-----IISGSEDGTLKIWNSSTYKVEK 264 (814)
T ss_dssp EECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSE-----EEEEETTSCEEEEETTTCSEEE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCE-----EEEEeCCCeEEEEECCCCcEEE
Confidence 9999 999999999999999999999999988887655 6999999999997 6889999999999999999988
Q ss_pred eeeccCcCeeEEEEeeCCC
Q 024868 239 HKRLLRKPASVLSISLDGK 257 (261)
Q Consensus 239 ~~~~~~~~v~~~~~s~dg~ 257 (261)
.+..+...+.+++|+|+|+
T Consensus 265 ~~~~~~~~v~~~~~~~~~~ 283 (814)
T 3mkq_A 265 TLNVGLERSWCIATHPTGR 283 (814)
T ss_dssp EECCSSSSEEEEEECTTCG
T ss_pred EeecCCCcEEEEEEccCCC
Confidence 8888889999999999997
No 75
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.4e-33 Score=226.48 Aligned_cols=240 Identities=10% Similarity=0.124 Sum_probs=179.6
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecC--------------------------------
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTS-------------------------------- 52 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~-------------------------------- 52 (261)
++|++++|+|+.+ ..++++++.++ .|..||.........
T Consensus 94 ~~V~~l~~~~~~~-~~~l~s~s~d~--------~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 164 (447)
T 3dw8_B 94 EKINKIRWLPQKN-AAQFLLSTNDK--------TIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMV 164 (447)
T ss_dssp CCCCEEEECCCCS-SSEEEEEECSS--------CEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEE
T ss_pred CceEEEEEcCCCC-cceEEEeCCCC--------eEEEEecccccCCcceecccCccccccCcccccceEeccccchheee
Confidence 7899999999631 25788888888 566666543221000
Q ss_pred -Ce-EEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceee-eeCCCCCCCCCeEEEEEeeCC-cEEE
Q 024868 53 -PL-VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLA-KKMPPLQDAGPQKCLSFSVDG-SRFA 128 (261)
Q Consensus 53 -~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~-~~l~ 128 (261)
.. ......+|...|.+++|+|++++|+++ .|+.|++||+........... .......|...|.+++|+|++ ++|+
T Consensus 165 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 243 (447)
T 3dw8_B 165 EASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFV 243 (447)
T ss_dssp EEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEE
T ss_pred eccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEE
Confidence 00 012246799999999999999999998 799999999984332222111 011233467889999999998 9999
Q ss_pred EeccCCeEEEEEccCceE----EeeccccCC------------ceeEEEEcCCCCEEEEecCCCcEEEEEccC-CcEEEE
Q 024868 129 AGGVDGHLRIMHWPSLRI----ILDEPKAHK------------SVLDMDFSLDSEFLATTSTDGSARIWKTED-GVAWTF 191 (261)
Q Consensus 129 ~~~~d~~i~~~d~~~~~~----~~~~~~~~~------------~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~-~~~~~~ 191 (261)
+++.||.|++||+++++. ...+..+.. .|.+++|+|++++|++++. +.|++||+++ ++++..
T Consensus 244 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~ 322 (447)
T 3dw8_B 244 YSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVET 322 (447)
T ss_dssp EEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCC
T ss_pred EEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccce
Confidence 999999999999998775 445555554 8999999999999999998 9999999997 888887
Q ss_pred EeecCCC--------------ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee----------------
Q 024868 192 LTRNSDE--------------KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR---------------- 241 (261)
Q Consensus 192 ~~~~~~~--------------~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~---------------- 241 (261)
+..|... .+..++|+|++++ +++++.||.|++||+.+++.+. +.
T Consensus 323 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~-----l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~ 396 (447)
T 3dw8_B 323 YQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSV-----VMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRK 396 (447)
T ss_dssp EESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSE-----EEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCC
T ss_pred eeccccccccccccccccccccceEEEECCCCCE-----EEEeccCCEEEEEEcCCCccee-eeecccccccccccCCcc
Confidence 7765321 0234899999998 6899999999999999887653 22
Q ss_pred -----------------ccCcCeeEEEEeeCCCEEeC
Q 024868 242 -----------------LLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 242 -----------------~~~~~v~~~~~s~dg~~la~ 261 (261)
.....+..++|+|+|++||+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~ 433 (447)
T 3dw8_B 397 VCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAV 433 (447)
T ss_dssp EECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEE
T ss_pred ccccCCcccccccccccccCCceeEEEECCCCCEEEE
Confidence 12346888999999999984
No 76
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.1e-33 Score=222.40 Aligned_cols=236 Identities=14% Similarity=0.142 Sum_probs=184.5
Q ss_pred CCceeeEEEEEeeC-CcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC----CCe
Q 024868 3 GGGTVTCGSWIKRP-ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS----GDD 77 (261)
Q Consensus 3 ~~~~v~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~ 77 (261)
..++|++++|+|.. +...++++++.++ .+..||..+.... ..........|...|.+++|+|+ +++
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~--------~v~vw~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 87 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSN--------RVTLYECHSQGEI-RLLQSYVDADADENFYTCAWTYDSNTSHPL 87 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETT--------EEEEEEECGGGCE-EEEEEEECSCTTCCEEEEEEEECTTTCCEE
T ss_pred CCCceEEEEEecccCCCCceEEEECCCC--------EEEEEEcCCCcEE-EeeeeccccCCCCcEEEEEeccCCCCCCCE
Confidence 46799999999852 2345566666677 6777777654421 11112223347788999999998 668
Q ss_pred EEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeec---ccc
Q 024868 78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDE---PKA 153 (261)
Q Consensus 78 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~ 153 (261)
|++++.||.|++||+.+++.... ...|...|.+++|+| ++++|++++.||.|++||+++++....+ ..+
T Consensus 88 l~~~~~dg~i~v~d~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 160 (366)
T 3k26_A 88 LAVAGSRGIIRIINPITMQCIKH-------YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH 160 (366)
T ss_dssp EEEEETTCEEEEECTTTCCEEEE-------EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSC
T ss_pred EEEecCCCEEEEEEchhceEeee-------ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccc
Confidence 99999999999999987764211 123678999999999 8999999999999999999998887666 567
Q ss_pred CCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee---------------------------cCCCceEEEEEe
Q 024868 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR---------------------------NSDEKIELCRFS 206 (261)
Q Consensus 154 ~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---------------------------~~~~~v~~~~~~ 206 (261)
...|.+++|+|++++|++++.|+.|++||+++++....+.. .+...|.+++|+
T Consensus 161 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (366)
T 3k26_A 161 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL 240 (366)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE
T ss_pred cCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc
Confidence 77999999999999999999999999999987654433221 134469999998
Q ss_pred cCCCcceEEEEEeeCCCcEEEEEECCCCeE--------------EeeeeccCcCeeEEEEeeC--CCEEeC
Q 024868 207 KDGTKPFLFCTVQRGDKALLAVYDISTWNK--------------IGHKRLLRKPASVLSISLD--GKYLAM 261 (261)
Q Consensus 207 p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~--------------~~~~~~~~~~v~~~~~s~d--g~~la~ 261 (261)
+++ +++++.|+.|++||+++++. +..+..+...+.+++|+|+ |++|++
T Consensus 241 --~~~-----l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~ 304 (366)
T 3k26_A 241 --GDL-----ILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL 304 (366)
T ss_dssp --TTE-----EEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE
T ss_pred --CCE-----EEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE
Confidence 566 68899999999999987643 6667778889999999999 999874
No 77
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-33 Score=230.17 Aligned_cols=208 Identities=11% Similarity=0.034 Sum_probs=164.1
Q ss_pred CceeeEEEEEeeC---CcceEEEEecCCCCCCCCCceEEEEEcCCCCcee-----cCCeEEeeecCCCCCceEEEECCCC
Q 024868 4 GGTVTCGSWIKRP---ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY-----TSPLVTYVFDESEGDPMTIAVNPSG 75 (261)
Q Consensus 4 ~~~v~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~ 75 (261)
.+.|.+++|+|+. ....++|+|+.|+ .|..||....... ........+.+|...|.+++|++++
T Consensus 207 ~~~V~~v~wsp~~~~~~~~~~LAs~s~Dg--------tvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~ 278 (524)
T 2j04_B 207 FGEVWDLKWHEGCHAPHLVGCLSFVSQEG--------TINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT 278 (524)
T ss_dssp CCSEEEEEECSSCCCSSSSCEEEEEETTS--------CEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS
T ss_pred CCcEEEEEECCCCCCCCCCceEEEEecCC--------eEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC
Confidence 4679999999962 1246899999999 7777777554321 0011123577899999999999864
Q ss_pred CeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEE--EEeeCC-cEEEEeccCCeEEEEEccCceEEeeccc
Q 024868 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCL--SFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDEPK 152 (261)
Q Consensus 76 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 152 (261)
.|++|+.||+|++||+.++...... ...|...|.++ .|+|++ ++|++++.|++|++||+++++....+..
T Consensus 279 -~lasgs~DgtV~lWD~~~~~~~~~~------~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~ 351 (524)
T 2j04_B 279 -TVVCGFKNGFVAEFDLTDPEVPSFY------DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVS 351 (524)
T ss_dssp -EEEEEETTSEEEEEETTBCSSCSEE------EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEE
T ss_pred -eEEEEeCCCEEEEEECCCCCCceEE------eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccc
Confidence 7999999999999999875431111 12456889999 578888 8999999999999999988765444434
Q ss_pred cCC--ceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEE
Q 024868 153 AHK--SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD 230 (261)
Q Consensus 153 ~~~--~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d 230 (261)
+.. .|.+++|+|+++.+++++.|+.|++||++++.++..+.+|.. .|++++|+|+|+. +++++.|++|++||
T Consensus 352 ~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~-~V~sva~Sp~g~~-----l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 352 RFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET-TITAIGVSRLHPM-----VLAGSADGSLIITN 425 (524)
T ss_dssp ECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSS-CEEEEECCSSCCB-----CEEEETTTEEECCB
T ss_pred ccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCC-ceEEEEeCCCCCe-----EEEEECCCEEEEEe
Confidence 432 488999999999999999999999999999998888887765 6999999999998 68999999999998
Q ss_pred CC
Q 024868 231 IS 232 (261)
Q Consensus 231 ~~ 232 (261)
+.
T Consensus 426 ~~ 427 (524)
T 2j04_B 426 AA 427 (524)
T ss_dssp SC
T ss_pred ch
Confidence 64
No 78
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.5e-32 Score=245.14 Aligned_cols=230 Identities=16% Similarity=0.183 Sum_probs=198.1
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
..++|++++|+|+ ..++++|+.++ .|..||..+... ...+.+|.+.|.+++|+|++++|++++
T Consensus 614 h~~~v~~~~~s~~---~~~l~s~~~d~--------~i~vw~~~~~~~------~~~~~~h~~~v~~~~~s~~~~~l~s~~ 676 (1249)
T 3sfz_A 614 HTDAVYHACFSQD---GQRIASCGADK--------TLQVFKAETGEK------LLDIKAHEDEVLCCAFSSDDSYIATCS 676 (1249)
T ss_dssp CSSCEEEEEECTT---SSEEEEEETTS--------CEEEEETTTCCE------EEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred ccccEEEEEECCC---CCEEEEEeCCC--------eEEEEECCCCCE------EEEeccCCCCEEEEEEecCCCEEEEEe
Confidence 3578999999996 56899999999 888889887764 567889999999999999999999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~ 160 (261)
.|+.|++||+.+++.... ...|...|.+++|+| ++.++++++.|+.|++||+.+++....+..|...|.++
T Consensus 677 ~d~~v~vwd~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~ 749 (1249)
T 3sfz_A 677 ADKKVKIWDSATGKLVHT-------YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749 (1249)
T ss_dssp TTSEEEEEETTTCCEEEE-------EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEE
T ss_pred CCCeEEEEECCCCceEEE-------EcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEE
Confidence 999999999988764221 123568899999999 55689999999999999999999888888888899999
Q ss_pred EEcCCCCEEEEecCCCcEEEEEccCCcEEEEEe-----------------------------------------------
Q 024868 161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT----------------------------------------------- 193 (261)
Q Consensus 161 ~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----------------------------------------------- 193 (261)
+|+|+++++++++.|+.|++||+.+++....+.
T Consensus 750 ~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~ 829 (1249)
T 3sfz_A 750 RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS 829 (1249)
T ss_dssp EECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC
T ss_pred EEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC
Confidence 999999999999999999999998776544432
Q ss_pred -------ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 194 -------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 194 -------~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
..+...+.+++|+|+++. +++++.|+.|++||+.+++.+..+..|...|.+++|+|+|++|++
T Consensus 830 ~~~~~~~~~~~~~v~~~~~sp~~~~-----l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s 899 (1249)
T 3sfz_A 830 GLLAEIHTGHHSTIQYCDFSPYDHL-----AVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLT 899 (1249)
T ss_dssp CEEEEEECSSSSCCCEEEECSSTTE-----EEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CceeEEcCCCCCceEEEEEcCCCCE-----EEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEE
Confidence 122345888999999998 688999999999999999999888999999999999999998874
No 79
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=6.2e-32 Score=208.66 Aligned_cols=233 Identities=13% Similarity=0.168 Sum_probs=182.5
Q ss_pred eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCc
Q 024868 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (261)
Q Consensus 7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 86 (261)
..+++|+++ +++|+| .|+ .|..||..+++. .....+.+|...|.+++|+|++++|++|+.||+
T Consensus 28 ~~~l~WS~~----~~lAvg-~D~--------tV~iWd~~tg~~----~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~ 90 (318)
T 4ggc_A 28 LNLVDWSSG----NVLAVA-LDN--------SVYLWSASSGDI----LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE 90 (318)
T ss_dssp CBCEEECTT----SEEEEE-ETT--------EEEEEETTTCCE----EEEEECCSTTCCEEEEEECTTSSEEEEEETTSE
T ss_pred ceEEEECCC----CEEEEE-eCC--------EEEEEECCCCCE----EEEEEecCCCCeEEEEEECCCCCEEEEEECCCc
Confidence 467999873 477776 477 889999888765 223455678889999999999999999999999
Q ss_pred EEEEEEeCCccccceee----------------------------------eeCCCCCCCCCeEEEEEeeCCcEEEEecc
Q 024868 87 CKLFEVYGGATDINLLA----------------------------------KKMPPLQDAGPQKCLSFSVDGSRFAAGGV 132 (261)
Q Consensus 87 i~i~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 132 (261)
|++|++.+++....... .......|...+..+.++++++++++++.
T Consensus 91 v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 170 (318)
T 4ggc_A 91 VQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN 170 (318)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec
Confidence 99999987754221100 00011234577899999999999999999
Q ss_pred CCeEEEEEccCceEE----eeccccCCceeEEEEcCCCCEE---EEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEE
Q 024868 133 DGHLRIMHWPSLRII----LDEPKAHKSVLDMDFSLDSEFL---ATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF 205 (261)
Q Consensus 133 d~~i~~~d~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l---~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 205 (261)
|+.|++||+++++.. .....+.+.|..+.++|++..+ ++++.++.|++||............. ..+..+.|
T Consensus 171 d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~--~~v~~~~~ 248 (318)
T 4ggc_A 171 DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH--SQVCSILW 248 (318)
T ss_dssp TSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS--SCEEEEEE
T ss_pred CcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce--eeeeeeee
Confidence 999999999876532 2334455689999999976533 46678899999999988877665533 35999999
Q ss_pred ecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 206 ~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+|+++.++ +++++.|+.|++||+++++.+..+.+|...|.+++|+|||++||+
T Consensus 249 ~~~~~~~~---~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S 301 (318)
T 4ggc_A 249 SPHYKELI---SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 301 (318)
T ss_dssp ETTTTEEE---EEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred cccccceE---EEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 99999832 345668999999999999999999999999999999999999874
No 80
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-33 Score=237.75 Aligned_cols=233 Identities=12% Similarity=0.109 Sum_probs=188.1
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC--CCeEEE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVC 80 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~ 80 (261)
..++|++++|+|+ ..++++|+.++ .|..||..+... .....+.+|.+.|.+++|+|+ +++|++
T Consensus 8 H~~~V~~l~~s~d---g~~latg~~dg--------~I~vwd~~~~~~----~~~~~l~~h~~~V~~l~~s~~~~~~~l~s 72 (753)
T 3jro_A 8 HNELIHDAVLDYY---GKRLATCSSDK--------TIKIFEVEGETH----KLIDTLTGHEGPVWRVDWAHPKFGTILAS 72 (753)
T ss_dssp CCCCEEEECCCSS---SCCEEEEETTT--------EEEEEEEETTEE----EEEEEECCCSSCEEEEEECCTTSCSEEEE
T ss_pred CcceeEEEEECCC---CCeEEEEECCC--------cEEEEecCCCCC----ccceeccCCcCceEEEEecCCCCCCEEEE
Confidence 3689999999996 55889999999 777777653322 225578899999999999988 999999
Q ss_pred EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC--CcEEEEeccCCeEEEEEccCce--EEeeccccCCc
Q 024868 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLR--IILDEPKAHKS 156 (261)
Q Consensus 81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~ 156 (261)
++.||.|++||+.++.... ......|...|.+++|+|+ ++++++++.||.|++||++++. .......+...
T Consensus 73 ~s~Dg~I~vwd~~~~~~~~-----~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~ 147 (753)
T 3jro_A 73 CSYDGKVLIWKEENGRWSQ-----IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 147 (753)
T ss_dssp EETTSCEEEEEEETTEEEE-----EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSC
T ss_pred EeCCCeEEEEECCCCcccc-----cccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCc
Confidence 9999999999999875211 1222346789999999999 9999999999999999998763 23344566778
Q ss_pred eeEEEEcC-------------CCCEEEEecCCCcEEEEEccCC----cEEEEEeecCCCceEEEEEecC---CCcceEEE
Q 024868 157 VLDMDFSL-------------DSEFLATTSTDGSARIWKTEDG----VAWTFLTRNSDEKIELCRFSKD---GTKPFLFC 216 (261)
Q Consensus 157 v~~~~~s~-------------~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~p~---~~~~~~~~ 216 (261)
|.+++|+| +++++++++.||.|++||++++ .+...+..|.. +|.+++|+|+ +++
T Consensus 148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~----- 221 (753)
T 3jro_A 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSY----- 221 (753)
T ss_dssp EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEE-----
T ss_pred eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCCCCCCE-----
Confidence 99999999 5899999999999999999987 44555665554 6999999999 777
Q ss_pred EEeeCCCcEEEEEECCCCe-----EEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 217 TVQRGDKALLAVYDISTWN-----KIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 217 ~~~~~~d~~i~~~d~~~~~-----~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+++++.||.|++||+++++ .......+...+.+++|+|+|++|++
T Consensus 222 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s 271 (753)
T 3jro_A 222 LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL 271 (753)
T ss_dssp EEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEE
T ss_pred EEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEE
Confidence 6889999999999998864 22233446788999999999998874
No 81
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.9e-32 Score=215.31 Aligned_cols=221 Identities=13% Similarity=0.166 Sum_probs=179.8
Q ss_pred eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeec-CCCCCceEEEECCCCCeEEEEecCC
Q 024868 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD-ESEGDPMTIAVNPSGDDFVCSTTNG 85 (261)
Q Consensus 7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg 85 (261)
+.+++|++ .. +++++.++ .|+.||..++.. ...+. .|...|.+++|+|++++|++++.||
T Consensus 96 ~~~~~~s~----~~-l~~~~~d~--------~v~lw~~~~~~~------~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 156 (401)
T 4aez_A 96 LNLLDWSN----LN-VVAVALER--------NVYVWNADSGSV------SALAETDESTYVASVKWSHDGSFLSVGLGNG 156 (401)
T ss_dssp CBCEEECT----TS-EEEEEETT--------EEEEEETTTCCE------EEEEECCTTCCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEeecC----CC-EEEEECCC--------eEEEeeCCCCcE------eEeeecCCCCCEEEEEECCCCCEEEEECCCC
Confidence 34466654 23 55666788 899999887764 22333 3788999999999999999999999
Q ss_pred cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC-ceEEeeccccCCceeEEEEcC
Q 024868 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-LRIILDEPKAHKSVLDMDFSL 164 (261)
Q Consensus 86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~v~~~~~s~ 164 (261)
.|++||+.+++.... ...|...|.+++| +++++++++.|+.|++||++. ......+..|...|.+++|+|
T Consensus 157 ~i~iwd~~~~~~~~~-------~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 227 (401)
T 4aez_A 157 LVDIYDVESQTKLRT-------MAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS 227 (401)
T ss_dssp CEEEEETTTCCEEEE-------ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred eEEEEECcCCeEEEE-------ecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC
Confidence 999999987764221 1245688999999 467999999999999999984 555566667778999999999
Q ss_pred CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEee--CCCcEEEEEECCCCeEEeeeec
Q 024868 165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR--GDKALLAVYDISTWNKIGHKRL 242 (261)
Q Consensus 165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~--~~d~~i~~~d~~~~~~~~~~~~ 242 (261)
++++|++++.|+.|++||+++++++..+..+.. .|.+++|+|++..+ ++++ +.|+.|++||+++++.+..+.
T Consensus 228 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~p~~~~l----l~~~~gs~d~~i~i~d~~~~~~~~~~~- 301 (401)
T 4aez_A 228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNA-AVKAVAWCPWQSNL----LATGGGTMDKQIHFWNAATGARVNTVD- 301 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTCSSEEEEECCCSS-CCCEEEECTTSTTE----EEEECCTTTCEEEEEETTTCCEEEEEE-
T ss_pred CCCEEEEEeCCCeEEEccCCCCCccEEecCCcc-eEEEEEECCCCCCE----EEEecCCCCCEEEEEECCCCCEEEEEe-
Confidence 999999999999999999999999888876655 69999999998873 3444 379999999999999887664
Q ss_pred cCcCeeEEEEeeCCCEEeC
Q 024868 243 LRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 243 ~~~~v~~~~~s~dg~~la~ 261 (261)
+...+.+++|+|++++|++
T Consensus 302 ~~~~v~~~~~s~~~~~l~~ 320 (401)
T 4aez_A 302 AGSQVTSLIWSPHSKEIMS 320 (401)
T ss_dssp CSSCEEEEEECSSSSEEEE
T ss_pred CCCcEEEEEECCCCCeEEE
Confidence 5678999999999999873
No 82
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=218.61 Aligned_cols=235 Identities=15% Similarity=0.114 Sum_probs=185.1
Q ss_pred CCceeeEEEEEe-eCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEE--e-----eecCCCCCceEEEECC-
Q 024868 3 GGGTVTCGSWIK-RPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVT--Y-----VFDESEGDPMTIAVNP- 73 (261)
Q Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~-----~~~~~~~~v~~~~~~~- 73 (261)
..++|+|++|+| + ..++++|+.++ .|..||..+.......... . ...+|...|.+++|+|
T Consensus 42 h~~~v~~~~~s~~~---~~~l~~~~~dg--------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 110 (408)
T 4a11_B 42 HGGGINTLDIEPVE---GRYMLSGGSDG--------VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH 110 (408)
T ss_dssp CSSCEEEEEECTTT---CCEEEEEETTS--------CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT
T ss_pred cCCcEEEEEEecCC---CCEEEEEcCCC--------eEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC
Confidence 468999999998 5 56899999998 7777777665432111100 0 1135899999999999
Q ss_pred CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC---CcEEEEeccCCeEEEEEccCceEEeec
Q 024868 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGVDGHLRIMHWPSLRIILDE 150 (261)
Q Consensus 74 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~~~d~~~~~~~~~~ 150 (261)
++++|++++.||.|++||+.++.. ...+.+...+.++.|+|. +.++++++.++.|++||+++++....+
T Consensus 111 ~~~~l~s~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 182 (408)
T 4a11_B 111 DTGMFTSSSFDKTLKVWDTNTLQT--------ADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL 182 (408)
T ss_dssp CTTCEEEEETTSEEEEEETTTTEE--------EEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE
T ss_pred CCcEEEEEeCCCeEEEeeCCCCcc--------ceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee
Confidence 788999999999999999988764 222334678899999984 459999999999999999998887777
Q ss_pred cccCCceeEEEEcCCCC-EEEEecCCCcEEEEEccCCc-EEEEEe--------------ecCCCceEEEEEecCCCcceE
Q 024868 151 PKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGV-AWTFLT--------------RNSDEKIELCRFSKDGTKPFL 214 (261)
Q Consensus 151 ~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~-~~~~~~--------------~~~~~~v~~~~~~p~~~~~~~ 214 (261)
..|...|.+++|+|+++ ++++++.|+.|++||+++++ ++..+. ..+...|.+++|+|++++
T Consensus 183 ~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--- 259 (408)
T 4a11_B 183 QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH--- 259 (408)
T ss_dssp CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE---
T ss_pred cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE---
Confidence 77888999999999998 58899999999999998765 333331 123346999999999998
Q ss_pred EEEEeeCCCcEEEEEECCCC-----------------------------------------------eEEeeeeccCcCe
Q 024868 215 FCTVQRGDKALLAVYDISTW-----------------------------------------------NKIGHKRLLRKPA 247 (261)
Q Consensus 215 ~~~~~~~~d~~i~~~d~~~~-----------------------------------------------~~~~~~~~~~~~v 247 (261)
+++++.|+.|++||++++ +.+..+..|...|
T Consensus 260 --l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v 337 (408)
T 4a11_B 260 --LLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTV 337 (408)
T ss_dssp --EEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCE
T ss_pred --EEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeE
Confidence 678888888999988654 3344556688899
Q ss_pred eEEEEeeCCCEEeC
Q 024868 248 SVLSISLDGKYLAM 261 (261)
Q Consensus 248 ~~~~~s~dg~~la~ 261 (261)
.+++|+|++++|++
T Consensus 338 ~~~~~s~~~~~l~s 351 (408)
T 4a11_B 338 DCCVFQSNFQELYS 351 (408)
T ss_dssp EEEEEETTTTEEEE
T ss_pred EEEEEcCCCCEEEE
Confidence 99999999999874
No 83
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-32 Score=218.21 Aligned_cols=232 Identities=13% Similarity=0.070 Sum_probs=181.7
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCC--CCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPK--TTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
++|.+++|+|+. ..++++|+.++ .|..||.. ++.. ........|...|.+++|+|++++|++++
T Consensus 103 ~~v~~~~~s~d~--~~l~~~~~~dg--------~v~iwd~~~~~~~~----~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 168 (450)
T 2vdu_B 103 SYIRNLRLTSDE--SRLIACADSDK--------SLLVFDVDKTSKNV----LKLRKRFCFSKRPNAISIAEDDTTVIIAD 168 (450)
T ss_dssp CCEEEEEECTTS--SEEEEEEGGGT--------EEEEEEECSSSSSC----EEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEEcCCC--CEEEEEECCCC--------eEEEEECcCCCCce----eeeeecccCCCCceEEEEcCCCCEEEEEe
Confidence 369999999963 44458898888 77777766 4443 11222235778999999999999999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC---CcEEEEeccCCeEEEEEccCceEEee-ccccCCcee
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVL 158 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~ 158 (261)
.+|.+++|++.+....... ......|...|.+++|+|+ +++|++++.|+.|++||+++++.+.. ...|...|.
T Consensus 169 ~~g~v~~~~~~~~~~~~~~---~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~ 245 (450)
T 2vdu_B 169 KFGDVYSIDINSIPEEKFT---QEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVS 245 (450)
T ss_dssp TTSEEEEEETTSCCCSSCC---CCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEE
T ss_pred CCCcEEEEecCCccccccc---ceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceE
Confidence 9999999999876542100 0122335688999999999 99999999999999999998887666 446777999
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeec------------------------CCCceEEEEEecCCCcceE
Q 024868 159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN------------------------SDEKIELCRFSKDGTKPFL 214 (261)
Q Consensus 159 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------------------~~~~v~~~~~~p~~~~~~~ 214 (261)
+++|+ ++++|++++.|+.|++||+++++++..+..+ ....+.+++|+|++++
T Consensus 246 ~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~--- 321 (450)
T 2vdu_B 246 SICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF--- 321 (450)
T ss_dssp EEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE---
T ss_pred EEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE---
Confidence 99999 9999999999999999999999988887632 1235889999999998
Q ss_pred EEEEeeC-CCcEEEEEEC--CCC---eEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 215 FCTVQRG-DKALLAVYDI--STW---NKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 215 ~~~~~~~-~d~~i~~~d~--~~~---~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
+++++ .++.|++||+ .++ +.+..+..+ ..+.+++|+|++.+++
T Consensus 322 --l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~ 370 (450)
T 2vdu_B 322 --VAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVT 370 (450)
T ss_dssp --EEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEE
T ss_pred --EEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEE
Confidence 44444 8999999999 555 556566666 8899999999765543
No 84
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.1e-32 Score=214.99 Aligned_cols=228 Identities=10% Similarity=-0.013 Sum_probs=182.0
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCC-eEEEE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCS 81 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~ 81 (261)
..++|++++|+|+ ..++++|+.++ .|..|+...... ......+..|...|.+++|+|+++ +|+++
T Consensus 10 h~~~v~~~~~s~~---~~~l~~~~~d~--------~v~iw~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 75 (342)
T 1yfq_A 10 PKDYISDIKIIPS---KSLLLITSWDG--------SLTVYKFDIQAK---NVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75 (342)
T ss_dssp CSSCEEEEEEEGG---GTEEEEEETTS--------EEEEEEEETTTT---EEEEEEEEECSSCEEEEEEEESSSEEEEEE
T ss_pred CCCcEEEEEEcCC---CCEEEEEcCCC--------eEEEEEeCCCCc---cccceeeeecCCceEEEEECCCCCcEEEEE
Confidence 4578999999995 56889998888 777777655431 011234457899999999999999 99999
Q ss_pred ecCCcEEEEEE-eCCccccceeeeeCCCCC--CCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC---------ceEEee
Q 024868 82 TTNGGCKLFEV-YGGATDINLLAKKMPPLQ--DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS---------LRIILD 149 (261)
Q Consensus 82 ~~dg~i~i~~~-~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~---------~~~~~~ 149 (261)
+.||.|++||+ .++.. ..... |...|.+++|+| ++++++++.|+.|++||+++ ++.+..
T Consensus 76 ~~dg~i~~wd~~~~~~~--------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 146 (342)
T 1yfq_A 76 TVQGEILKVDLIGSPSF--------QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN 146 (342)
T ss_dssp ETTSCEEEECSSSSSSE--------EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS
T ss_pred cCCCeEEEEEeccCCce--------EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE
Confidence 99999999999 77653 12223 678999999999 99999999999999999987 555443
Q ss_pred ccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccC-CcE-EEEEeecCCCceEEEEEec-CCCcceEEEEEeeCCCcEE
Q 024868 150 EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-GVA-WTFLTRNSDEKIELCRFSK-DGTKPFLFCTVQRGDKALL 226 (261)
Q Consensus 150 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~-~~~-~~~~~~~~~~~v~~~~~~p-~~~~~~~~~~~~~~~d~~i 226 (261)
+ .+...+.+++|+|++ +++++.|+.|++||+++ ++. .......+...+.+++|+| ++++ +++++.||.+
T Consensus 147 ~-~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~-----l~~~~~dg~i 218 (342)
T 1yfq_A 147 T-KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEG-----YACSSIDGRV 218 (342)
T ss_dssp S-SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCE-----EEEEETTSEE
T ss_pred E-eeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCE-----EEEEecCCcE
Confidence 3 467789999999987 89999999999999998 553 2333333455799999999 9997 6888899999
Q ss_pred EEEECCCC------eEEeeeeccCc---------CeeEEEEeeCCCEEeC
Q 024868 227 AVYDISTW------NKIGHKRLLRK---------PASVLSISLDGKYLAM 261 (261)
Q Consensus 227 ~~~d~~~~------~~~~~~~~~~~---------~v~~~~~s~dg~~la~ 261 (261)
++||++.. +....+..+.. .+.+++|+|++++|++
T Consensus 219 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 268 (342)
T 1yfq_A 219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYT 268 (342)
T ss_dssp EEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEE
T ss_pred EEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEE
Confidence 99999876 55556666654 9999999999998874
No 85
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=238.94 Aligned_cols=218 Identities=7% Similarity=0.050 Sum_probs=178.3
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
..+|+|++|+|+ ..++|+|+.++ .|..|+..+... .. ...|...|.+++|+| +++|++++.
T Consensus 17 ~~~V~~lafspd---g~~lAsgs~Dg--------~I~lw~~~~~~~------~~-~~~~~~~V~~l~fsp-g~~L~S~s~ 77 (902)
T 2oaj_A 17 SSKPIAAAFDFT---QNLLAIATVTG--------EVHIYGQQQVEV------VI-KLEDRSAIKEMRFVK-GIYLVVINA 77 (902)
T ss_dssp SSCEEEEEEETT---TTEEEEEETTS--------EEEEECSTTCEE------EE-ECSSCCCEEEEEEET-TTEEEEEET
T ss_pred CCCcEEEEECCC---CCEEEEEeCCC--------EEEEEeCCCcEE------EE-EcCCCCCEEEEEEcC-CCEEEEEEC
Confidence 468999999996 56999999999 899998876553 22 234788999999999 889999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE-----------eeccc
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-----------LDEPK 152 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~-----------~~~~~ 152 (261)
|++|++||+.+++... .+.+...|.+++|+|+++++++|+.||.|++||+++++.. .....
T Consensus 78 D~~v~lWd~~~~~~~~--------~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~ 149 (902)
T 2oaj_A 78 KDTVYVLSLYSQKVLT--------TVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAA 149 (902)
T ss_dssp TCEEEEEETTTCSEEE--------EEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSS
T ss_pred cCeEEEEECCCCcEEE--------EEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccccccccc
Confidence 9999999998876421 2234578999999999999999999999999999887653 12244
Q ss_pred cCCceeEEEEcCC-CCEEEEecCCCcEEEEEccCCcEEEEEeec-----------------CCCceEEEEEecCCCcceE
Q 024868 153 AHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRN-----------------SDEKIELCRFSKDGTKPFL 214 (261)
Q Consensus 153 ~~~~v~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----------------~~~~v~~~~~~p~~~~~~~ 214 (261)
|.+.|.+++|+|+ +..+++++.|+.| +||+++++++..+..+ +...|.+++|+|+|++
T Consensus 150 h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~--- 225 (902)
T 2oaj_A 150 RLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH--- 225 (902)
T ss_dssp CCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE---
T ss_pred CCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE---
Confidence 6678999999996 5789999999999 9999999998888654 1235999999999998
Q ss_pred EEEEeeCCCcEEEEEECCCCeEEeeee-----c-------------cCcCeeEEEEee
Q 024868 215 FCTVQRGDKALLAVYDISTWNKIGHKR-----L-------------LRKPASVLSISL 254 (261)
Q Consensus 215 ~~~~~~~~d~~i~~~d~~~~~~~~~~~-----~-------------~~~~v~~~~~s~ 254 (261)
+++++.|+.|++||+++++.+.... . +...|.+++|++
T Consensus 226 --lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~ 281 (902)
T 2oaj_A 226 --IITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMC 281 (902)
T ss_dssp --EEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEE
T ss_pred --EEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEe
Confidence 7999999999999999988764311 1 234799999965
No 86
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=2.2e-33 Score=223.36 Aligned_cols=223 Identities=11% Similarity=0.097 Sum_probs=160.2
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC--------CCCeEEEEecCCcEEEE
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--------SGDDFVCSTTNGGCKLF 90 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~dg~i~i~ 90 (261)
..++++|+.|+ .+..||..+...... .....+.+|.+.|.+++|+| |+++|++++.|++|++|
T Consensus 101 ~~~las~~~d~--------~v~lw~~~~~~~~~~-~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W 171 (393)
T 4gq1_A 101 SLFLACVCQDN--------TVRLIITKNETIITQ-HVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW 171 (393)
T ss_dssp EEEEEEEETTS--------CEEEEEEETTEEEEE-EEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred CCEEEEEeCCC--------cEEEEECCCCcccee-eeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence 56789999998 777777766543111 12235789999999999997 78999999999999999
Q ss_pred EEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCCeEEEEEccCceEEeec-------------------
Q 024868 91 EVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDE------------------- 150 (261)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~------------------- 150 (261)
|+.+.... .....+..++.+++|+|++ ++|++++.|++|++||+++++.....
T Consensus 172 d~~~~~~~-------~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~ 244 (393)
T 4gq1_A 172 RLTDEGPI-------LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL 244 (393)
T ss_dssp EEETTEEE-------EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred ECCCCcee-------eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence 99876542 2234467899999999987 57999999999999999876543211
Q ss_pred ------cccCCceeEEEEc-CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEE------------------EEE
Q 024868 151 ------PKAHKSVLDMDFS-LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIEL------------------CRF 205 (261)
Q Consensus 151 ------~~~~~~v~~~~~s-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~------------------~~~ 205 (261)
..+...+.++.|+ |+++.+++++.|+.+++||+.+++....+..+.. .+.. ..|
T Consensus 245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (393)
T 4gq1_A 245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGACP 323 (393)
T ss_dssp C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEE
T ss_pred eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeEEE
Confidence 1344568889986 7999999999999999999988776555543322 1222 234
Q ss_pred ecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 206 ~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+|.....+ +++++.||.|++||+.+++.+.....+..+|.+++|+|||++||+
T Consensus 324 ~~~~~~~~---~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~ 376 (393)
T 4gq1_A 324 HPRYMDYF---ATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAI 376 (393)
T ss_dssp CSSCTTEE---EEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEE
T ss_pred ccCCCCEE---EEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEE
Confidence 44322212 578899999999999999887777788899999999999999984
No 87
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=9.9e-33 Score=216.35 Aligned_cols=230 Identities=8% Similarity=0.077 Sum_probs=178.7
Q ss_pred CCceeeEEEEEeeCCcceEEEEecC---CCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC---CC
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKS---SRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS---GD 76 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~ 76 (261)
...+|++++|+|+. ..++++|+. ++ .+..||..+... ......+|...|.+++|+|+ ++
T Consensus 17 h~~~v~~~~~~p~~--~~l~~~~s~~~~d~--------~v~iw~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~ 81 (357)
T 3i2n_A 17 FNYTVFDCKWVPCS--AKFVTMGNFARGTG--------VIQLYEIQHGDL-----KLLREIEKAKPIKCGTFGATSLQQR 81 (357)
T ss_dssp CSSCEEEEEECTTS--SEEEEEEC--CCCE--------EEEEEEECSSSE-----EEEEEEEESSCEEEEECTTCCTTTC
T ss_pred CCCceEEEEEcCCC--ceEEEecCccCCCc--------EEEEEeCCCCcc-----cceeeecccCcEEEEEEcCCCCCCc
Confidence 35689999999963 467777765 67 778888776553 12223368899999999998 69
Q ss_pred eEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEE------EeeCCcEEEEeccCCeEEEEEccCce-EEee
Q 024868 77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLS------FSVDGSRFAAGGVDGHLRIMHWPSLR-IILD 149 (261)
Q Consensus 77 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------~s~~~~~l~~~~~d~~i~~~d~~~~~-~~~~ 149 (261)
+|++++.||.|++||+.+...... ....|...|.++. |+|++++|++++.|+.|++||+++++ ....
T Consensus 82 ~l~~~~~dg~i~iwd~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 155 (357)
T 3i2n_A 82 YLATGDFGGNLHIWNLEAPEMPVY------SVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVAN 155 (357)
T ss_dssp CEEEEETTSCEEEECTTSCSSCSE------EECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEE
T ss_pred eEEEecCCCeEEEEeCCCCCccEE------EEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCccee
Confidence 999999999999999987762111 1124567899995 47899999999999999999998876 4444
Q ss_pred ccccCC----ceeEEE----EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEec---CCCcceEEEEE
Q 024868 150 EPKAHK----SVLDMD----FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK---DGTKPFLFCTV 218 (261)
Q Consensus 150 ~~~~~~----~v~~~~----~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~~~~~~~~ 218 (261)
+..+.+ .+.+++ |+|+++++++++.|+.|++||+++++.... ..+ ...+.+++|+| ++++ ++
T Consensus 156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~-~~~v~~~~~~~~~~~~~~-----l~ 228 (357)
T 3i2n_A 156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNI-KNGVCSLEFDRKDISMNK-----LV 228 (357)
T ss_dssp ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EEC-SSCEEEEEESCSSSSCCE-----EE
T ss_pred ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCC-CCceEEEEcCCCCCCCCE-----EE
Confidence 433332 688888 789999999999999999999999887554 334 34699999999 8887 68
Q ss_pred eeCCCcEEEEEECCCCeEEeeee-----ccCcCeeEEEEeeCCC-EEe
Q 024868 219 QRGDKALLAVYDISTWNKIGHKR-----LLRKPASVLSISLDGK-YLA 260 (261)
Q Consensus 219 ~~~~d~~i~~~d~~~~~~~~~~~-----~~~~~v~~~~~s~dg~-~la 260 (261)
+++.||.|++||+++++.+..+. .|...+.+++|+|+++ +|+
T Consensus 229 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 276 (357)
T 3i2n_A 229 ATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFL 276 (357)
T ss_dssp EEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred EECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEE
Confidence 88999999999998776544443 7889999999999998 565
No 88
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4e-32 Score=208.25 Aligned_cols=193 Identities=15% Similarity=0.153 Sum_probs=156.4
Q ss_pred eecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccCCe
Q 024868 58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGH 135 (261)
Q Consensus 58 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~ 135 (261)
.+.+|.+.|.+++|+|+|++|++++.|++|++||+....... . .....|.++|.+++|+| ++++|++++.|++
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~--~---~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~ 78 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKL--I---DTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCC--C---EEECCCSSCEEEEEECCGGGCSEEEEEETTTE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEE--E---EEEccccCCeEEEEecCCCcCCEEEEEcCCCE
Confidence 467899999999999999999999999999999997542100 0 11234678999999986 4899999999999
Q ss_pred EEEEEccCce--EEeeccccCCceeEEEEcCC--CCEEEEecCCCcEEEEEccCCcE--EEEEeecCCCceEEEEEecCC
Q 024868 136 LRIMHWPSLR--IILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDG 209 (261)
Q Consensus 136 i~~~d~~~~~--~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~p~~ 209 (261)
|++||+++++ .+..+..|...|.+++|+|+ +.+|++++.|+.|++||++++.. ...+..|.. .|.+++|+|++
T Consensus 79 v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~-~v~~~~~~p~~ 157 (297)
T 2pm7_B 79 VMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI-GVNSASWAPAT 157 (297)
T ss_dssp EEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSS-CEEEEEECCCC
T ss_pred EEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccC-ccceEeecCCc
Confidence 9999998764 33445567778999999997 88999999999999999987632 344555544 69999999973
Q ss_pred -------------CcceEEEEEeeCCCcEEEEEECCCCe----EEeeeeccCcCeeEEEEeeCC---CEEeC
Q 024868 210 -------------TKPFLFCTVQRGDKALLAVYDISTWN----KIGHKRLLRKPASVLSISLDG---KYLAM 261 (261)
Q Consensus 210 -------------~~~~~~~~~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~v~~~~~s~dg---~~la~ 261 (261)
++ +++++.|++|++||+++++ ....+..|...|.+++|+|++ ++||+
T Consensus 158 ~~~~~~~~~~~~~~~-----l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las 224 (297)
T 2pm7_B 158 IEEDGEHNGTKESRK-----FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS 224 (297)
T ss_dssp ------------CCE-----EEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred ccccccCCCCCCcce-----EEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE
Confidence 45 6899999999999998765 455677899999999999995 67763
No 89
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.7e-32 Score=221.10 Aligned_cols=237 Identities=15% Similarity=0.024 Sum_probs=176.0
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
..++|++++|+|. +..++++|+.|+ .|..||..+..+ ........+...+.+++|+|++++|++|+
T Consensus 163 H~~~V~~l~f~p~--~~~~l~s~s~D~--------~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 228 (435)
T 4e54_B 163 AGGSITGLKFNPL--NTNQFYASSMEG--------TTRLQDFKGNIL----RVFASSDTINIWFCSLDVSASSRMVVTGD 228 (435)
T ss_dssp SSCCCCEEEECSS--CTTEEEEECSSS--------CEEEEETTSCEE----EEEECCSSCSCCCCCEEEETTTTEEEEEC
T ss_pred CCCCEEEEEEeCC--CCCEEEEEeCCC--------EEEEeeccCCce----eEEeccCCCCccEEEEEECCCCCEEEEEe
Confidence 3679999999984 356899999999 778888766543 11112223345678999999999999999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCc-EEEEeccCCeEEEEEccCceEEe---eccccCCcee
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPSLRIIL---DEPKAHKSVL 158 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~~~~~---~~~~~~~~v~ 158 (261)
.||.|++||+..... .....|...|.+++|+|++. ++++++.|+.|++||+++.+... ....|...|.
T Consensus 229 ~dg~i~~wd~~~~~~--------~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~ 300 (435)
T 4e54_B 229 NVGNVILLNMDGKEL--------WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVN 300 (435)
T ss_dssp SSSBEEEEESSSCBC--------CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEE
T ss_pred CCCcEeeeccCccee--------EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeecccccc
Confidence 999999999875432 22334678999999999876 67889999999999998765432 2245667899
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCC-----ceEEEEEecCCCcceEE-------EEEeeCCCcEE
Q 024868 159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE-----KIELCRFSKDGTKPFLF-------CTVQRGDKALL 226 (261)
Q Consensus 159 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~v~~~~~~p~~~~~~~~-------~~~~~~~d~~i 226 (261)
+++|+|+|++|++++.|+.|++||+.+++....+..+... .+....|+|++..+.+. .+..+..++.|
T Consensus 301 ~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i 380 (435)
T 4e54_B 301 AACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTI 380 (435)
T ss_dssp ECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCE
T ss_pred ceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEE
Confidence 9999999999999999999999999998877776544321 12234566665541100 01233455689
Q ss_pred EEEECCCCeEEeeee-ccCcCeeEE-EEeeCCCEEeC
Q 024868 227 AVYDISTWNKIGHKR-LLRKPASVL-SISLDGKYLAM 261 (261)
Q Consensus 227 ~~~d~~~~~~~~~~~-~~~~~v~~~-~~s~dg~~la~ 261 (261)
++||..+++.+..+. .|...|.++ +|+|||++||+
T Consensus 381 ~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~las 417 (435)
T 4e54_B 381 DVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLAS 417 (435)
T ss_dssp EEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEE
T ss_pred EEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEE
Confidence 999999999876654 566778887 69999999873
No 90
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=8.3e-32 Score=225.46 Aligned_cols=237 Identities=14% Similarity=0.074 Sum_probs=189.7
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCC-ceEEEECC--CCCeEE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD-PMTIAVNP--SGDDFV 79 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~--~~~~l~ 79 (261)
..+.|.+++|+|+ ..++++++ ++ .+..||..+... .......+.+|... |.+++|+| ++++|+
T Consensus 17 ~~~~v~~~~~spd---g~~l~~~~-~~--------~v~v~~~~~~~~--~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~ 82 (615)
T 1pgu_A 17 QRNFTTHLSYDPT---TNAIAYPC-GK--------SAFVRCLDDGDS--KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLC 82 (615)
T ss_dssp CTTCCCCCEEETT---TTEEEEEE-TT--------EEEEEECCSSCC--SSCSEEEECTTTTSCEEEEEECSSTTCCEEE
T ss_pred ccCceeEEEECCC---CCEEEEec-CC--------eEEEEECCCCCC--ccccceEEecCCCceEEEEEECcCCCCCEEE
Confidence 3578999999996 45777776 55 677788776510 00125678899999 99999999 999999
Q ss_pred EEecCCcEEEEEEeCCccccceeee-eCCCCCCCCCeEEEEEeeCCcEEEEeccC----CeEEEEEccCceEEeeccccC
Q 024868 80 CSTTNGGCKLFEVYGGATDINLLAK-KMPPLQDAGPQKCLSFSVDGSRFAAGGVD----GHLRIMHWPSLRIILDEPKAH 154 (261)
Q Consensus 80 ~~~~dg~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~~ 154 (261)
+++.||.|++||+.++......... ......+...|.+++|+|++++|++++.+ +.|++|| .++....+..|.
T Consensus 83 s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~ 160 (615)
T 1pgu_A 83 SGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHS 160 (615)
T ss_dssp EEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCS
T ss_pred EecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCC
Confidence 9999999999999754110000000 01112356789999999999999999877 6888888 556667777888
Q ss_pred CceeEEEEcCCCC-EEEEecCCCcEEEEEccCCcEEEEEeecCCC--ceEEEEEecC-CCcceEEEEEeeCCCcEEEEEE
Q 024868 155 KSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDE--KIELCRFSKD-GTKPFLFCTVQRGDKALLAVYD 230 (261)
Q Consensus 155 ~~v~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~p~-~~~~~~~~~~~~~~d~~i~~~d 230 (261)
..|.+++|+|+++ .+++++.|+.|++||+.+++.+..+..|... .|.+++|+|+ +++ +++++.|+.|++||
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----l~~~~~dg~i~vwd 235 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEF-----VITVGSDRKISCFD 235 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCE-----EEEEETTCCEEEEE
T ss_pred ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCE-----EEEEeCCCeEEEEE
Confidence 8999999999998 7999999999999999999999888866541 5999999999 887 68889999999999
Q ss_pred CCCCeEEeee-e---ccCcCeeEEEEeeCCCEEeC
Q 024868 231 ISTWNKIGHK-R---LLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 231 ~~~~~~~~~~-~---~~~~~v~~~~~s~dg~~la~ 261 (261)
+++++.+..+ . .|...+.+++|+ ++++|++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~ 269 (615)
T 1pgu_A 236 GKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFAT 269 (615)
T ss_dssp TTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEE
T ss_pred CCCCCEeEEecccccccCCceEEEEEc-CCCEEEE
Confidence 9999988777 5 788999999999 9998873
No 91
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.8e-32 Score=209.09 Aligned_cols=206 Identities=16% Similarity=0.194 Sum_probs=162.8
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC--CCeEEEE
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVCS 81 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~ 81 (261)
.++|++++|+++. ...++++|+.|+ .|..||..+... .....+.+|...|.+++|+|+ +.+|+++
T Consensus 57 ~~~V~~v~~~~~~-~~~~l~s~s~D~--------~v~iWd~~~~~~----~~~~~~~~h~~~V~~v~~~p~~~g~~lasg 123 (316)
T 3bg1_A 57 EGPVWQVAWAHPM-YGNILASCSYDR--------KVIIWREENGTW----EKSHEHAGHDSSVNSVCWAPHDYGLILACG 123 (316)
T ss_dssp SSCEEEEEECCGG-GSSCEEEEETTS--------CEEEECCSSSCC----CEEEEECCCSSCCCEEEECCTTTCSCEEEE
T ss_pred CccEEEEEeCCCC-CCCEEEEEECCC--------EEEEEECCCCcc----eEEEEccCCCCceEEEEECCCCCCcEEEEE
Confidence 5789999998642 256899999999 888888876532 224467889999999999997 7899999
Q ss_pred ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC-----------------CcEEEEeccCCeEEEEEccCc
Q 024868 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-----------------GSRFAAGGVDGHLRIMHWPSL 144 (261)
Q Consensus 82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----------------~~~l~~~~~d~~i~~~d~~~~ 144 (261)
+.|+.|++||+....... .......|...+.+++|+|+ +++|++++.|+.|++||++..
T Consensus 124 s~D~~i~lwd~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~ 199 (316)
T 3bg1_A 124 SSDGAISLLTYTGEGQWE----VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED 199 (316)
T ss_dssp CSSSCEEEEEECSSSCEE----ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT
T ss_pred cCCCCEEEEecCCCCCcc----eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC
Confidence 999999999998653210 01122345678899999997 478999999999999999754
Q ss_pred ---eEEeeccccCCceeEEEEcCCC----CEEEEecCCCcEEEEEccCC---c-EEEEEeecCCCceEEEEEecCCCcce
Q 024868 145 ---RIILDEPKAHKSVLDMDFSLDS----EFLATTSTDGSARIWKTEDG---V-AWTFLTRNSDEKIELCRFSKDGTKPF 213 (261)
Q Consensus 145 ---~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~d~~i~iwd~~~~---~-~~~~~~~~~~~~v~~~~~~p~~~~~~ 213 (261)
+....+..|...|.+++|+|++ ++|++++.|+.|++||+++. + ....+..+ ...|.+++|+|++++
T Consensus 200 ~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~g~~-- 276 (316)
T 3bg1_A 200 GQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF-NDVVWHVSWSITANI-- 276 (316)
T ss_dssp SCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC-SSCEEEEEECTTTCC--
T ss_pred CccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC-CCcEEEEEEcCCCCE--
Confidence 3455666777899999999986 78999999999999999762 1 12233444 446999999999998
Q ss_pred EEEEEeeCCCcEEEEEECC
Q 024868 214 LFCTVQRGDKALLAVYDIS 232 (261)
Q Consensus 214 ~~~~~~~~~d~~i~~~d~~ 232 (261)
+++++.|++|++|+..
T Consensus 277 ---las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 277 ---LAVSGGDNKVTLWKES 292 (316)
T ss_dssp ---EEEEESSSCEEEEEEC
T ss_pred ---EEEEcCCCeEEEEEEC
Confidence 7899999999999986
No 92
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-32 Score=217.87 Aligned_cols=236 Identities=13% Similarity=0.092 Sum_probs=169.2
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCC----------CCCCceEEEEEcCCCCc--eecC-CeEEeeec-CCCCCceE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRAS----------SSPSVLEIFSFDPKTTS--VYTS-PLVTYVFD-ESEGDPMT 68 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~----------~~~~~~~i~~~~~~~~~--~~~~-~~~~~~~~-~~~~~v~~ 68 (261)
-...|.+++|+|+ +.++|+++.|+.. +-.+.+.-..|.|++.. +... ......+. .|...|.+
T Consensus 14 ~~~~v~sv~~SpD---G~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~ 90 (588)
T 2j04_A 14 FEDWKNNLTWARD---GTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRV 90 (588)
T ss_dssp CSSSSCCEEECTT---SCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEE
T ss_pred hhccEEEEEECCC---CCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEE
Confidence 4567899999996 6799999988832 00111111222222100 0000 00011222 45778999
Q ss_pred EEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCC-----CCeEEEEEeeCCcEEEEeccCCeEEEEEccC
Q 024868 69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA-----GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (261)
Q Consensus 69 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 143 (261)
++|+|+|++||+++.||.+++||... . + ..+.+. ..+.+++|||||++|++|+.||+|++||+.+
T Consensus 91 vawSPdG~~LAs~s~dg~V~iwd~~~--~----l----~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~ 160 (588)
T 2j04_A 91 CKPSPIDDWMAVLSNNGNVSVFKDNK--M----L----TNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK 160 (588)
T ss_dssp EEECSSSSCEEEEETTSCEEEEETTE--E----E----EECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCc--e----e----eeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 99999999999999999999999433 1 1 111122 3599999999999999999999999999988
Q ss_pred ceE-------Eeec----cccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcE---EEEEeecCCCceEEEEEecCC
Q 024868 144 LRI-------ILDE----PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA---WTFLTRNSDEKIELCRFSKDG 209 (261)
Q Consensus 144 ~~~-------~~~~----~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~p~~ 209 (261)
+.. +..+ .+|...|.+++|+||| +++++.|+.|++||+.+++. ..++..++...|.+++|+ |
T Consensus 161 ~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g 236 (588)
T 2j04_A 161 NSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D 236 (588)
T ss_dssp CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T
T ss_pred CccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C
Confidence 742 2333 4455689999999999 78888899999999988773 345643344469999999 5
Q ss_pred CcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEE--eeCCCEEeC
Q 024868 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI--SLDGKYLAM 261 (261)
Q Consensus 210 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--s~dg~~la~ 261 (261)
+. +++++ +++|++||+.+++......+|...+.+++| +||++.|++
T Consensus 237 ~~-----LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~ 284 (588)
T 2j04_A 237 YK-----VVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLM 284 (588)
T ss_dssp TE-----EEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEE
T ss_pred CE-----EEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEE
Confidence 65 46666 689999999988874444479999999999 999988763
No 93
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.1e-30 Score=211.98 Aligned_cols=230 Identities=13% Similarity=0.156 Sum_probs=188.1
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEEC--CCCCeEEE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVN--PSGDDFVC 80 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~ 80 (261)
..++|++++|+|+. ++++|+.++ .+..||..+... ...+.+|...|.+++|+ ++++++++
T Consensus 161 h~~~V~~l~~~~~~----~l~s~s~dg--------~i~vwd~~~~~~------~~~~~~h~~~v~~l~~~~~~~~~~l~s 222 (464)
T 3v7d_B 161 HDGGVWALKYAHGG----ILVSGSTDR--------TVRVWDIKKGCC------THVFEGHNSTVRCLDIVEYKNIKYIVT 222 (464)
T ss_dssp CSSCEEEEEECSTT----EEEEEETTS--------CEEEEETTTTEE------EEEECCCSSCEEEEEEEESSSCEEEEE
T ss_pred CCcCEEEEEEcCCC----EEEEEeCCC--------CEEEEECCCCcE------EEEECCCCCccEEEEEecCCCCCEEEE
Confidence 46789999998742 899999999 888889887664 56788899999999998 57889999
Q ss_pred EecCCcEEEEEEeCCccccceeee----------------eCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCc
Q 024868 81 STTNGGCKLFEVYGGATDINLLAK----------------KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL 144 (261)
Q Consensus 81 ~~~dg~i~i~~~~~~~~~~~~~~~----------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 144 (261)
++.|+.|++||+.+.......... ......|...+.++ +++++++++++.|+.|++||++++
T Consensus 223 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~ 300 (464)
T 3v7d_B 223 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQM 300 (464)
T ss_dssp EETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTT
T ss_pred EcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCC
Confidence 999999999999876532111000 00112234556554 788999999999999999999999
Q ss_pred eEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCc
Q 024868 145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA 224 (261)
Q Consensus 145 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~ 224 (261)
+.+..+..|...|.+++|+|+++++++++.|+.|++||+++++++..+..|.. .|.+++|+ +++ +++++.||
T Consensus 301 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~--~~~-----l~s~s~dg 372 (464)
T 3v7d_B 301 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA-LVGLLRLS--DKF-----LVSAAADG 372 (464)
T ss_dssp EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEEC--SSE-----EEEEETTS
T ss_pred cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-cEEEEEEc--CCE-----EEEEeCCC
Confidence 98888888888999999999999999999999999999999999999987765 69999997 455 68999999
Q ss_pred EEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 225 LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 225 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
.|++||+++++..... .+...+..++|+|++++|++
T Consensus 373 ~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ 408 (464)
T 3v7d_B 373 SIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVS 408 (464)
T ss_dssp EEEEEETTTCCEEEEE-ECTTCCCEEEEEECSSEEEE
T ss_pred cEEEEECCCCceeeee-cCCCCccEEEEEeCCCEEEE
Confidence 9999999988766433 35667888999999999874
No 94
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.6e-30 Score=211.15 Aligned_cols=218 Identities=15% Similarity=0.239 Sum_probs=181.7
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG 85 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 85 (261)
.++|+++.+ .++++|+.++ .|..||..+.+. ...+.+|.+.|.+++|+|++ .|++++.||
T Consensus 124 v~~~~~~~~-----~~l~sgs~dg--------~i~vwd~~~~~~------~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg 183 (464)
T 3v7d_B 124 VITCLQFED-----NYVITGADDK--------MIRVYDSINKKF------LLQLSGHDGGVWALKYAHGG-ILVSGSTDR 183 (464)
T ss_dssp CEEEEEEET-----TEEEEEETTS--------CEEEEETTTTEE------EEEECCCSSCEEEEEECSTT-EEEEEETTS
T ss_pred cEEEEEECC-----CEEEEEcCCC--------cEEEEECCCCcE------EEEEeCCCcCEEEEEEcCCC-EEEEEeCCC
Confidence 356666633 4899999999 888899887765 56788999999999999988 899999999
Q ss_pred cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccCCeEEEEEccCceE-----------------
Q 024868 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRI----------------- 146 (261)
Q Consensus 86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~----------------- 146 (261)
+|++||+.++.... ....|...|.+++|++ +++++++++.|+.|++||++++..
T Consensus 184 ~i~vwd~~~~~~~~-------~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 256 (464)
T 3v7d_B 184 TVRVWDIKKGCCTH-------VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP 256 (464)
T ss_dssp CEEEEETTTTEEEE-------EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCG
T ss_pred CEEEEECCCCcEEE-------EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeecc
Confidence 99999998876421 1123678999999995 778999999999999999987653
Q ss_pred ------EeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEee
Q 024868 147 ------ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (261)
Q Consensus 147 ------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~ 220 (261)
......|...+.++ +++++++++++.|+.|++||+++++++..+..|.. .+.+++|+|++++ ++++
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~-----l~sg 328 (464)
T 3v7d_B 257 EENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD-RIYSTIYDHERKR-----CISA 328 (464)
T ss_dssp GGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEEETTTTE-----EEEE
T ss_pred CCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC-CEEEEEEcCCCCE-----EEEE
Confidence 22334455566665 67899999999999999999999999999887765 6999999999998 6899
Q ss_pred CCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 221 ~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
+.|+.|++||+++++.+..+..|...+.+++|+ +++|+
T Consensus 329 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~ 366 (464)
T 3v7d_B 329 SMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLV 366 (464)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEE
T ss_pred eCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEE
Confidence 999999999999999998898999999999997 45654
No 95
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-32 Score=217.19 Aligned_cols=236 Identities=11% Similarity=0.081 Sum_probs=182.2
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCC---CCceec----CCeEEeeecC--CCCCceEEE--E
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPK---TTSVYT----SPLVTYVFDE--SEGDPMTIA--V 71 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~---~~~~~~----~~~~~~~~~~--~~~~v~~~~--~ 71 (261)
..++|++++|+|+ ..++++|+.++ .|..||.. .+.... .......+.. +...+.++. +
T Consensus 110 h~~~v~~~~~~~~---~~~l~s~s~dg--------~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 178 (437)
T 3gre_A 110 CSSTVTQITMIPN---FDAFAVSSKDG--------QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFV 178 (437)
T ss_dssp CSSCEEEEEECTT---SSEEEEEETTS--------EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEE
T ss_pred CCCCEEEEEEeCC---CCEEEEEeCCC--------EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEE
Confidence 3678999999984 56899999999 77777663 222211 1111222223 566788887 6
Q ss_pred CCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecc
Q 024868 72 NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP 151 (261)
Q Consensus 72 ~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 151 (261)
++++++|++++.|+.|++||+.+++....+ ....|...|.+++|+|++++|++++.||.|++||+++++.+..+.
T Consensus 179 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 253 (437)
T 3gre_A 179 NEEKSLLVALTNLSRVIIFDIRTLERLQII-----ENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS 253 (437)
T ss_dssp CSSCEEEEEEETTSEEEEEETTTCCEEEEE-----ECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB
T ss_pred cCCCCEEEEEeCCCeEEEEeCCCCeeeEEE-----ccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe
Confidence 789999999999999999999887652221 111256799999999999999999999999999999988876654
Q ss_pred -ccCCceeEEEEc----CCCCEEEEecCCCcEEEEEccCCcEEEEEeec-------------------------CCCceE
Q 024868 152 -KAHKSVLDMDFS----LDSEFLATTSTDGSARIWKTEDGVAWTFLTRN-------------------------SDEKIE 201 (261)
Q Consensus 152 -~~~~~v~~~~~s----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------------------------~~~~v~ 201 (261)
.++..|.+++|+ |++++|++++.|+.|++||+++++++..+..+ +...|+
T Consensus 254 ~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 333 (437)
T 3gre_A 254 FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALS 333 (437)
T ss_dssp CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGC
T ss_pred cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceE
Confidence 566689999655 56889999999999999999999988888744 233588
Q ss_pred EEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec-------------------------------------cC
Q 024868 202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-------------------------------------LR 244 (261)
Q Consensus 202 ~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~-------------------------------------~~ 244 (261)
+++|+ ++++ +++++.|+.|++||+++++....+.. |.
T Consensus 334 ~l~~~-~~~~-----l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 407 (437)
T 3gre_A 334 TISVS-NDKI-----LLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHH 407 (437)
T ss_dssp CEEEE-TTEE-----EEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------C
T ss_pred EEEEC-CceE-----EEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccc
Confidence 89999 6666 68999999999999998876655543 67
Q ss_pred cCeeEEEEeeC--CCEEe
Q 024868 245 KPASVLSISLD--GKYLA 260 (261)
Q Consensus 245 ~~v~~~~~s~d--g~~la 260 (261)
..|.+++|+++ +.+|+
T Consensus 408 ~~I~~i~~~~~~~~~~l~ 425 (437)
T 3gre_A 408 DIINSISTCEVDETPLLV 425 (437)
T ss_dssp CCEEEEEEEESSSSEEEE
T ss_pred cceeeEeeeccCCceEEE
Confidence 88999999998 66765
No 96
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-32 Score=213.04 Aligned_cols=218 Identities=12% Similarity=0.049 Sum_probs=163.6
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccc
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD 98 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~ 98 (261)
..++++|+.|+ .|..||..++.. ...+. ...|.++.|+|+ +++++.|+++++|+.......
T Consensus 48 ~~~l~sg~~Dg--------~v~iwd~~~~~~------~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~ 108 (343)
T 3lrv_A 48 KWVCMCRCEDG--------ALHFTQLKDSKT------ITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITI 108 (343)
T ss_dssp EEEEEEEEETT--------EEEEEEESSSSC------EEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEE
T ss_pred CCEEEEECCCC--------cEEEEECCCCcE------EEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEE
Confidence 56899999999 888898877654 22222 356778888888 999999999999987643210
Q ss_pred cceee---eeCCCCCCCCCeEEEEEee--CCcEEEEeccCCeEEEEEccCceEEeecccc-CCceeEEEEcCCCCEEEEe
Q 024868 99 INLLA---KKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKA-HKSVLDMDFSLDSEFLATT 172 (261)
Q Consensus 99 ~~~~~---~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~ 172 (261)
..... .......+..+|.+++|+| +++++++++.|++|++||+++++.......+ ...+.+++|+|++++|++|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg 188 (343)
T 3lrv_A 109 LDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALY 188 (343)
T ss_dssp EETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEE
T ss_pred eecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEE
Confidence 00000 0011223457899999999 9999999999999999999998875544333 3479999999999999999
Q ss_pred cCCCcEEEEEccCCcEE-EEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec---cCcCee
Q 024868 173 STDGSARIWKTEDGVAW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL---LRKPAS 248 (261)
Q Consensus 173 ~~d~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~---~~~~v~ 248 (261)
+.|+.|++||+++++.+ ..+...+..+|.+++|+|++++ ++++++ +.|++||+++++.+..+.. +...+.
T Consensus 189 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~-----l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 262 (343)
T 3lrv_A 189 SPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYW-----MVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTG 262 (343)
T ss_dssp CTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSE-----EEEEES-SBEEEEETTSSTTCBSSCCCBC-----C
T ss_pred cCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCE-----EEEEeC-CeEEEEEcCCCCcceeeccccccccccc
Confidence 99999999999999887 7777623447999999999998 577774 4999999998876543332 223333
Q ss_pred --EEEEeeCCCEEeC
Q 024868 249 --VLSISLDGKYLAM 261 (261)
Q Consensus 249 --~~~~s~dg~~la~ 261 (261)
+++|+|+|++|++
T Consensus 263 ~~~~~~~~~g~~l~~ 277 (343)
T 3lrv_A 263 TVTYDIDDSGKNMIA 277 (343)
T ss_dssp CEEEEECTTSSEEEE
T ss_pred ceEEEECCCCCEEEE
Confidence 6999999999974
No 97
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.9e-30 Score=202.16 Aligned_cols=201 Identities=19% Similarity=0.229 Sum_probs=168.9
Q ss_pred EeeecCCCCCceEEEECCC-CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC
Q 024868 56 TYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (261)
Q Consensus 56 ~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 134 (261)
...|++|.+.|++++|+|+ +++|++|+.|++|++||+........... .....|...|.+++|+|++++|++++.|+
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~--~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ--RALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEE--EEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceee--EEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 5578999999999999997 68999999999999999987654222211 11234568999999999999999999999
Q ss_pred eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceE
Q 024868 135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (261)
Q Consensus 135 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 214 (261)
.|++|+............+...+....+++++++|++++.|+.+++||+............+...+..++|++++...+
T Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~- 187 (340)
T 4aow_A 109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI- 187 (340)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE-
T ss_pred cceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE-
Confidence 9999999988887777777778899999999999999999999999999876655444333445699999999876533
Q ss_pred EEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 215 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+++++.|+.|++||+++++.+..+..|...|.+++|+|+|++|++
T Consensus 188 --~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 232 (340)
T 4aow_A 188 --IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCAS 232 (340)
T ss_dssp --EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred --EEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEE
Confidence 478889999999999999998888899999999999999999874
No 98
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-32 Score=215.58 Aligned_cols=192 Identities=13% Similarity=0.048 Sum_probs=152.6
Q ss_pred ecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEE
Q 024868 59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI 138 (261)
Q Consensus 59 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~ 138 (261)
+..+.+.|.+++|+|++++|++++.|+.|++||+.++... .......|...|.+++|+|++++|++++.|+.|++
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~v 81 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWK-----HARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYV 81 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEE-----ECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEE
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceE-----EEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 4446778999999999999999999999999999976310 01222346789999999999999999999999999
Q ss_pred EEccCce---EEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCc---EEEEEeecCCCceEEEEEecCCCcc
Q 024868 139 MHWPSLR---IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV---AWTFLTRNSDEKIELCRFSKDGTKP 212 (261)
Q Consensus 139 ~d~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~ 212 (261)
||+.+++ .......|...|.+++|+|++++|++++.|+.|++||+++++ ....+...+...|.+++|+|++++
T Consensus 82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~- 160 (377)
T 3dwl_C 82 YEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL- 160 (377)
T ss_dssp C------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE-
T ss_pred EEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE-
Confidence 9998876 455667788899999999999999999999999999999877 366776624457999999999998
Q ss_pred eEEEEEeeCCCcEEEEEECC------------------CCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 213 FLFCTVQRGDKALLAVYDIS------------------TWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 213 ~~~~~~~~~~d~~i~~~d~~------------------~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+++++.|+.|++||++ .++.+..+ .|...|.+++|+|+|++||+
T Consensus 161 ----l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~ 222 (377)
T 3dwl_C 161 ----LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAY 222 (377)
T ss_dssp ----EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEE
T ss_pred ----EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEE
Confidence 6889999999999985 34455555 78889999999999998874
No 99
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.5e-32 Score=245.14 Aligned_cols=226 Identities=17% Similarity=0.168 Sum_probs=195.4
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
..++.+++|+|+ ..++++|+.++ .+..|+..+... ...+.+|...|.+++|+|++++|++++.
T Consensus 961 ~~~i~~~~~sp~---g~~l~~g~~~g--------~i~i~d~~~~~~------~~~~~~h~~~v~~l~~s~dg~~l~s~~~ 1023 (1249)
T 3sfz_A 961 EAQVSCCCLSPH---LEYVAFGDEDG--------AIKIIELPNNRV------FSSGVGHKKAVRHIQFTADGKTLISSSE 1023 (1249)
T ss_dssp CSCEEEEEECTT---SSEEEEEETTS--------CCEEEETTTTSC------EEECCCCSSCCCCEEECSSSSCEEEECS
T ss_pred cCcEEEEEEcCC---CCEEEEEcCCC--------CEEEEEcCCCce------eeecccCCCceEEEEECCCCCEEEEEcC
Confidence 457899999996 56899999998 777888776654 4567789999999999999999999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
||.|++||+.++.. .....+...+.++.|+|++. +++++.|+.+++||+.+++....+..|...|.+++|+
T Consensus 1024 dg~i~vwd~~~~~~--------~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s 1094 (1249)
T 3sfz_A 1024 DSVIQVWNWQTGDY--------VFLQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAIS 1094 (1249)
T ss_dssp SSBEEEEETTTTEE--------ECCBCCSSCEEEEEECSSSE-EEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEEC
T ss_pred CCEEEEEECCCCce--------EEEecCCCcEEEEEEcCCCc-EEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEEC
Confidence 99999999988764 23345678999999999775 6677799999999999998877777888899999999
Q ss_pred CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee---
Q 024868 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK--- 240 (261)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~--- 240 (261)
|+++++++++.|+.|++||+.+++++..+..|.. .|++++|+|+|++ +++++.||.|++||+.+++.+..+
T Consensus 1095 ~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~-~v~~~~~s~dg~~-----lat~~~dg~i~vwd~~~~~~~~~~~~~ 1168 (1249)
T 3sfz_A 1095 SDATKFSSTSADKTAKIWSFDLLSPLHELKGHNG-CVRCSAFSLDGIL-----LATGDDNGEIRIWNVSDGQLLHSCAPI 1168 (1249)
T ss_dssp SSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSS-CEEEEEECSSSSE-----EEEEETTSCCCEEESSSSCCCCCCCCC
T ss_pred CCCCEEEEEcCCCcEEEEECCCcceeeeeccCCC-cEEEEEECCCCCE-----EEEEeCCCEEEEEECCCCceEEEeccc
Confidence 9999999999999999999999998888887765 6999999999998 789999999999999998876544
Q ss_pred ------eccCcCeeEEEEeeCCCEEeC
Q 024868 241 ------RLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 241 ------~~~~~~v~~~~~s~dg~~la~ 261 (261)
..|...|.+++|+|||++|++
T Consensus 1169 ~~~~~~~~~~~~v~~l~fs~dg~~l~s 1195 (1249)
T 3sfz_A 1169 SVEEGTATHGGWVTDVCFSPDSKTLVS 1195 (1249)
T ss_dssp C-------CCSCCCEEEECTTSSCEEE
T ss_pred cccccccccCceEEEEEECCCCCEEEE
Confidence 457788999999999999873
No 100
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.2e-30 Score=210.31 Aligned_cols=225 Identities=12% Similarity=0.078 Sum_probs=167.8
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCC-----CceEEEECCCCCeE
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG-----DPMTIAVNPSGDDF 78 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l 78 (261)
+.+|++++|+|+ +.++|+++.++ .+..||..+ + ...+. |.. .+.+++|||||++|
T Consensus 85 ~~~V~~vawSPd---G~~LAs~s~dg--------~V~iwd~~~--~------l~~l~-~~~~~~~~sv~svafSPDG~~L 144 (588)
T 2j04_A 85 VCYPRVCKPSPI---DDWMAVLSNNG--------NVSVFKDNK--M------LTNLD-SKGNLSSRTYHCFEWNPIESSI 144 (588)
T ss_dssp SCCEEEEEECSS---SSCEEEEETTS--------CEEEEETTE--E------EEECC-CSSCSTTTCEEEEEECSSSSCE
T ss_pred CCcEEEEEECCC---CCEEEEEeCCC--------cEEEEeCCc--e------eeecc-CCCccccccEEEEEEcCCCCEE
Confidence 578999999996 66899999999 788888543 1 23344 554 59999999999999
Q ss_pred EEEecCCcEEEEEEeCCccccc---eeee-eCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE---eec-
Q 024868 79 VCSTTNGGCKLFEVYGGATDIN---LLAK-KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII---LDE- 150 (261)
Q Consensus 79 ~~~~~dg~i~i~~~~~~~~~~~---~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~---~~~- 150 (261)
++|+.||+|++||+.++..... .+.. ......|...|.+++|+||| +++++.|+.+++||+..++.. ..+
T Consensus 145 Asgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~ 222 (588)
T 2j04_A 145 VVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ 222 (588)
T ss_dssp EEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE
T ss_pred EEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec
Confidence 9999999999999988642110 0111 11123356799999999999 777789999999999877631 233
Q ss_pred cccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEE--ecCCCcceEEEEEeeCCCcEEEE
Q 024868 151 PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF--SKDGTKPFLFCTVQRGDKALLAV 228 (261)
Q Consensus 151 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~~~~~~~~~~~d~~i~~ 228 (261)
..|...|.+++|+ |+.||+++ ++.|++||+.+++......+|. ..+..++| +|+++. +++++++|+ ++
T Consensus 223 ~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~-~~V~~va~~~s~d~~~-----La~a~edG~-kl 292 (588)
T 2j04_A 223 NASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSL-ENFHIIPLNHEKESTI-----LLMSNKTSY-KV 292 (588)
T ss_dssp CCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCC-SCCCEEEETTCSSCEE-----EEECSSCEE-EE
T ss_pred ccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCC-ceEEEEEeeeCCCCCE-----EEEEcCCCC-EE
Confidence 2455689999999 68899887 6999999999877744333554 46999999 999987 688899999 99
Q ss_pred EECCCC-----------------------eEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 229 YDISTW-----------------------NKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 229 ~d~~~~-----------------------~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
|....- +.+..+. ....|.+++|||||+.+|+
T Consensus 293 w~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG~~lA~ 347 (588)
T 2j04_A 293 LLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGISLSPDGYSIAI 347 (588)
T ss_dssp EESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEEEECTTSSEEEE
T ss_pred EeeccEEECCCceEEEEcCCEEEEEECCCCceeeec-cceEEEEEEECCCCCEEEE
Confidence 987411 1111111 1235889999999999884
No 101
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.8e-30 Score=203.08 Aligned_cols=197 Identities=14% Similarity=0.182 Sum_probs=166.4
Q ss_pred CCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec
Q 024868 52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131 (261)
Q Consensus 52 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 131 (261)
.......+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.... ...|...|.+++|+|++++|++++
T Consensus 21 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-------~~~h~~~v~~~~~~~~~~~l~s~~ 93 (369)
T 3zwl_B 21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT-------LDGHTGTIWSIDVDCFTKYCVTGS 93 (369)
T ss_dssp CSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE-------ECCCSSCEEEEEECTTSSEEEEEE
T ss_pred cccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh-------hhhcCCcEEEEEEcCCCCEEEEEe
Confidence 3455678899999999999999999999999999999999987764211 123568899999999999999999
Q ss_pred cCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCC-----CcEEEEEccCCc-----------EEEEEeec
Q 024868 132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTEDGV-----------AWTFLTRN 195 (261)
Q Consensus 132 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~i~iwd~~~~~-----------~~~~~~~~ 195 (261)
.|+.|++||+.+++...... +...+.+++|+|+++++++++.+ +.|++||+..++ ....+..+
T Consensus 94 ~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
T 3zwl_B 94 ADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH 172 (369)
T ss_dssp TTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred CCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence 99999999999988766555 67789999999999999999998 999999998654 22333322
Q ss_pred CC-CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC-CeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 196 SD-EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 196 ~~-~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
.. ..+.+++|+|++++ +++++.||.|++||+++ ++.+..+..+...+.+++|+|++++|++
T Consensus 173 ~~~~~~~~~~~~~~~~~-----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 235 (369)
T 3zwl_B 173 EGLDAATVAGWSTKGKY-----IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFIT 235 (369)
T ss_dssp TTCCCEEEEEECGGGCE-----EEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred cCccceeEEEEcCCCCE-----EEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEE
Confidence 22 15999999999998 68889999999999998 6777788889999999999999998874
No 102
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.98 E-value=1.6e-30 Score=209.23 Aligned_cols=250 Identities=12% Similarity=0.089 Sum_probs=184.2
Q ss_pred CceeeEEEEEeeCCc-------ceEEEEecCCCCCCCCCceEEEEEcCC--------------CCce----ecC-CeEEe
Q 024868 4 GGTVTCGSWIKRPEN-------VNLVVLGKSSRASSSPSVLEIFSFDPK--------------TTSV----YTS-PLVTY 57 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~-------~~~~~~g~~~~~~~~~~~~~i~~~~~~--------------~~~~----~~~-~~~~~ 57 (261)
.-|..|+.|.|+... ...+++|.... +..|.+.+..++.. .... ... .....
T Consensus 45 ~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~--~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 122 (430)
T 2xyi_A 45 EWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTS--DEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIE 122 (430)
T ss_dssp SSCCSCEEECSCCEECTTCSCEEEEEEEECCCS--SSCEEEEEEEEEEC--------------------------CEEEE
T ss_pred CCCceEEEECcccccccCCCcceEEEEEEEcCC--CCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEE
Confidence 357889999997631 25677777654 25677777766521 1100 011 12234
Q ss_pred eecCCCCCceEEEECCC-CCeEEEEecCCcEEEEEEeCCccccc---eeeeeCCCCCCCCCeEEEEEeeCCc-EEEEecc
Q 024868 58 VFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDIN---LLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGV 132 (261)
Q Consensus 58 ~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~ 132 (261)
....|.+.|.+++|+|+ +++|++++.+|.|++|++........ ..........|...+.+++|+|++. +|++++.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 56678999999999997 67899999999999999976311000 0000111224567899999999988 9999999
Q ss_pred CCeEEEEEccCceE-------EeeccccCCceeEEEEcC-CCCEEEEecCCCcEEEEEccCC---cEEEEEeecCCCceE
Q 024868 133 DGHLRIMHWPSLRI-------ILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDG---VAWTFLTRNSDEKIE 201 (261)
Q Consensus 133 d~~i~~~d~~~~~~-------~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~v~ 201 (261)
||.|++||+.++.. ......|...|.+++|+| ++.+|++++.|+.|++||++++ +++..+..|.. .|+
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~v~ 281 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA-EVN 281 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS-CEE
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC-CeE
Confidence 99999999987321 233446667899999999 7789999999999999999987 56667765544 699
Q ss_pred EEEEecCCCcceEEEEEeeCCCcEEEEEECCC-CeEEeeeeccCcCeeEEEEeeCCCE-Ee
Q 024868 202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHKRLLRKPASVLSISLDGKY-LA 260 (261)
Q Consensus 202 ~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~v~~~~~s~dg~~-la 260 (261)
+++|+|+++++ +++++.||.|++||+++ .+.+..+..|...|.+++|+|+++. |+
T Consensus 282 ~i~~~p~~~~~----l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~ 338 (430)
T 2xyi_A 282 CLSFNPYSEFI----LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 338 (430)
T ss_dssp EEEECSSCTTE----EEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEE
T ss_pred EEEeCCCCCCE----EEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEE
Confidence 99999999863 57889999999999998 4566777889999999999999964 44
No 103
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.98 E-value=2e-30 Score=203.55 Aligned_cols=226 Identities=14% Similarity=0.098 Sum_probs=160.8
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeE-EEE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF-VCS 81 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~ 81 (261)
...+|+|++|+|+ ..++++|+.++ +..|+...... ... .+...+..+++.++++.+ +++
T Consensus 18 h~~~V~~v~fs~d---g~~la~g~~~~---------~~iw~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~ 77 (355)
T 3vu4_A 18 VSNPVTDYEFNQD---QSCLILSTLKS---------FEIYNVHPVAH------IMS--QEMRHLSKVRMLHRTNYVAFVT 77 (355)
T ss_dssp -CCCCCEEEECTT---SSEEEEECSSE---------EEEEEETTEEE------EEE--EECSCCCEEEECTTSSEEEEEC
T ss_pred CCCceEEEEECCC---CCEEEEEcCCE---------EEEEecCCcce------eee--eecCCeEEEEEcCCCCEEEEEE
Confidence 3578999999996 55888886554 33555544332 111 122357888999988877 467
Q ss_pred ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC-----------------------------------cE
Q 024868 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-----------------------------------SR 126 (261)
Q Consensus 82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-----------------------------------~~ 126 (261)
+.|++|++||..+++.... +.+...|.+++|+++. .+
T Consensus 78 ~~d~~v~iWd~~~~~~~~~--------~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~ 149 (355)
T 3vu4_A 78 GVKEVVHIWDDVKKQDVSR--------IKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGL 149 (355)
T ss_dssp SSTTEEEEEETTTTEEEEE--------EECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTE
T ss_pred CCccEEEEEECCCCcEEEE--------EECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccE
Confidence 7789999999987764221 1223455555554432 34
Q ss_pred EEE--eccCCeEEEEEccCce----------------EEeeccccCCceeEEEEcCCCCEEEEecCCCc-EEEEEccCCc
Q 024868 127 FAA--GGVDGHLRIMHWPSLR----------------IILDEPKAHKSVLDMDFSLDSEFLATTSTDGS-ARIWKTEDGV 187 (261)
Q Consensus 127 l~~--~~~d~~i~~~d~~~~~----------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-i~iwd~~~~~ 187 (261)
+++ ++.+|.|++||+.+++ ....+..|...|.+++|+|+|++|++++.|++ |++||+++++
T Consensus 150 la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~ 229 (355)
T 3vu4_A 150 LVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV 229 (355)
T ss_dssp EEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC
T ss_pred EEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 444 5788999999998765 14556778889999999999999999999998 9999999999
Q ss_pred EEEEEe-ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEe--ee------------------e---cc
Q 024868 188 AWTFLT-RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG--HK------------------R---LL 243 (261)
Q Consensus 188 ~~~~~~-~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~--~~------------------~---~~ 243 (261)
++..+. +.+...|.+++|+|+|++ +++++.|++|++||++.+.... .+ . ..
T Consensus 230 ~~~~~~~g~h~~~v~~~~~s~~~~~-----l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (355)
T 3vu4_A 230 LVREFRRGLDRADVVDMKWSTDGSK-----LAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDK 304 (355)
T ss_dssp EEEEEECTTCCSCEEEEEECTTSCE-----EEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCT
T ss_pred EEEEEEcCCCCCcEEEEEECCCCCE-----EEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCC
Confidence 999998 324457999999999998 7899999999999997653211 00 0 01
Q ss_pred CcCeeEEEEeeCCCEEeC
Q 024868 244 RKPASVLSISLDGKYLAM 261 (261)
Q Consensus 244 ~~~v~~~~~s~dg~~la~ 261 (261)
......++|++||++|++
T Consensus 305 ~~~~~~~a~~~d~~~l~~ 322 (355)
T 3vu4_A 305 HVRGCKIAWISESSLVVV 322 (355)
T ss_dssp TCCCCEEEESSSSEEEEE
T ss_pred CCCceEEEEeCCCCEEEE
Confidence 122367999999988763
No 104
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.98 E-value=7.1e-30 Score=204.87 Aligned_cols=230 Identities=17% Similarity=0.198 Sum_probs=169.1
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceec--------------------------------
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT-------------------------------- 51 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~-------------------------------- 51 (261)
..+|+|++|+|+ ..++++|+.++ .|..||..+.+...
T Consensus 147 ~~~V~sv~fspd---g~~lasgs~Dg--------~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d 215 (420)
T 4gga_A 147 GEYISSVAWIKE---GNYLAVGTSSA--------EVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHD 215 (420)
T ss_dssp TCCEEEEEECTT---SSEEEEEETTS--------CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred CCcEEEEEECCC---CCEEEEEECCC--------eEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEee
Confidence 467999999995 56899999999 66666665443210
Q ss_pred ---CCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCc-EE
Q 024868 52 ---SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RF 127 (261)
Q Consensus 52 ---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l 127 (261)
.......+.+|...+..+.|+|+++++++++.|+.+++|+...+....... .....+...|.+++|+|++. .+
T Consensus 216 ~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~---~~~~~~~~~V~~~~~~p~~~~~l 292 (420)
T 4gga_A 216 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL---QTFTQHQGAVKAVAWCPWQSNVL 292 (420)
T ss_dssp TTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCS---EEECCCSSCEEEEEECTTCTTEE
T ss_pred ecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceee---eeecccCCceeeeeeCCCcccEE
Confidence 112234567888999999999999999999999999999998765422221 12234567899999999654 55
Q ss_pred EE--eccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEec--CCCcEEEEEccCCcEEEEEeecCCCceEEE
Q 024868 128 AA--GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELC 203 (261)
Q Consensus 128 ~~--~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~ 203 (261)
++ |+.|++|++||+.+++....+ ..+..+.++.|+|+++.+++++ .|+.|+|||+.+++++.++.+|.. .|.++
T Consensus 293 a~~~gs~D~~I~iwd~~t~~~~~~~-~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~-~V~~l 370 (420)
T 4gga_A 293 ATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS-RVLSL 370 (420)
T ss_dssp EEEECTTTCEEEEEETTTTEEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS-CEEEE
T ss_pred EEEeecCCCEEEEEeCCccccceee-ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC-CEEEE
Confidence 54 457999999999999886554 4556789999999999888754 789999999999999999998766 69999
Q ss_pred EEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEee
Q 024868 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL 254 (261)
Q Consensus 204 ~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~ 254 (261)
+|+|||++ +++++.|++|++||+....+......+........+..
T Consensus 371 ~~spdg~~-----l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~~~ 416 (420)
T 4gga_A 371 TMSPDGAT-----VASAAADETLRLWRCFELDPARRREREKASAAKSSLIH 416 (420)
T ss_dssp EECTTSSC-----EEEEETTTEEEEECCSCSSCC-----------------
T ss_pred EEcCCCCE-----EEEEecCCeEEEEECCCCCccchhhhccCCccccccCC
Confidence 99999998 79999999999999987655444444444433334433
No 105
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.3e-30 Score=201.88 Aligned_cols=195 Identities=15% Similarity=0.161 Sum_probs=160.5
Q ss_pred EeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC--CcEEEEeccC
Q 024868 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVD 133 (261)
Q Consensus 56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d 133 (261)
...+.+|.+.|.+++|+|++++|++++.||.|++|++....... ......|...|.+++|+|+ +++|++++.|
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 78 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKL-----IDTLTGHEGPVWRVDWAHPKFGTILASCSYD 78 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEE-----EEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCccee-----eeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence 34678999999999999999999999999999999998543211 1112246789999999987 9999999999
Q ss_pred CeEEEEEccCce--EEeeccccCCceeEEEEcCC--CCEEEEecCCCcEEEEEccCCc--EEEEEeecCCCceEEEEEec
Q 024868 134 GHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGV--AWTFLTRNSDEKIELCRFSK 207 (261)
Q Consensus 134 ~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~p 207 (261)
|.|++||+.+++ .......+...|.+++|+|+ +++|++++.|+.|++||+++++ ....+..+.. .|.+++|+|
T Consensus 79 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-~v~~~~~~~ 157 (379)
T 3jrp_A 79 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI-GVNSASWAP 157 (379)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT-CEEEEEECC
T ss_pred CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC-ceEEEEEcC
Confidence 999999999886 55666667789999999999 9999999999999999999873 3334444444 699999999
Q ss_pred -------------CCCcceEEEEEeeCCCcEEEEEECCCCe----EEeeeeccCcCeeEEEEeeC---CCEEeC
Q 024868 208 -------------DGTKPFLFCTVQRGDKALLAVYDISTWN----KIGHKRLLRKPASVLSISLD---GKYLAM 261 (261)
Q Consensus 208 -------------~~~~~~~~~~~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~v~~~~~s~d---g~~la~ 261 (261)
++++ +++++.|+.|++||+++++ ....+..|...|.+++|+|+ +++|++
T Consensus 158 ~~~~~~~~~~~~~~~~~-----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s 226 (379)
T 3jrp_A 158 ATIEEDGEHNGTKESRK-----FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 226 (379)
T ss_dssp CC----------CTTCE-----EEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred ccccccccccCCCCCCE-----EEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEE
Confidence 5777 6889999999999998754 34456678899999999999 888863
No 106
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.7e-29 Score=196.92 Aligned_cols=223 Identities=12% Similarity=0.217 Sum_probs=173.3
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceec---CCeEEeeecCCCCCceEEEECCC--CCe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT---SPLVTYVFDESEGDPMTIAVNPS--GDD 77 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~--~~~ 77 (261)
...+|++++|+|.. +..++++|+.++ .|..||........ .......+..|...|.+++|+|+ +++
T Consensus 56 ~~~~v~~~~~~~~~-d~~~l~s~~~dg--------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 126 (351)
T 3f3f_A 56 HDSSIVAIDWASPE-YGRIIASASYDK--------TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLK 126 (351)
T ss_dssp CSSCEEEEEECCGG-GCSEEEEEETTS--------CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSE
T ss_pred CCCcEEEEEEcCCC-CCCEEEEEcCCC--------eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcE
Confidence 35789999999842 156899999988 66667665542111 11335567789999999999999 999
Q ss_pred EEEEecCCcEEEEEEeCCccccceee------eeCCCCCCCCCeEEEEEeeC---CcEEEEeccCCeEEEEEccCceE--
Q 024868 78 FVCSTTNGGCKLFEVYGGATDINLLA------KKMPPLQDAGPQKCLSFSVD---GSRFAAGGVDGHLRIMHWPSLRI-- 146 (261)
Q Consensus 78 l~~~~~dg~i~i~~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~~~d~~~~~~-- 146 (261)
|++++.||.|++||+.+......... .......+...+.+++|+|+ +.++++++.++.+.+|+...++.
T Consensus 127 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 206 (351)
T 3f3f_A 127 LACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV 206 (351)
T ss_dssp EEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEE
T ss_pred EEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceee
Confidence 99999999999999988764322111 01112245678999999997 89999999999998888776654
Q ss_pred EeeccccCCceeEEEEcCCC----CEEEEecCCCcEEEEEccCC------------------------------------
Q 024868 147 ILDEPKAHKSVLDMDFSLDS----EFLATTSTDGSARIWKTEDG------------------------------------ 186 (261)
Q Consensus 147 ~~~~~~~~~~v~~~~~s~~~----~~l~~~~~d~~i~iwd~~~~------------------------------------ 186 (261)
...+..|...|.+++|+|++ ++|++++.|+.|++||++++
T Consensus 207 ~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (351)
T 3f3f_A 207 AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEE 286 (351)
T ss_dssp EEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------
T ss_pred eeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccce
Confidence 45566677899999999998 89999999999999999875
Q ss_pred ----------cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868 187 ----------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (261)
Q Consensus 187 ----------~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~ 240 (261)
+.+..+..|.. .|++++|+|++++ +++++.||.|++||+.+++.+..+
T Consensus 287 ~~~~~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~-----l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 287 KAELQSNLQVELLSEHDDHNG-EVWSVSWNLTGTI-----LSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp ----CCSEEEEEEEEECTTSS-CEEEEEECSSSCC-----EEEEETTSCEEEEEECTTSCEEEE
T ss_pred eeeecccccccEEEEEecccc-cEEEEEEcCCCCE-----EEEecCCCcEEEEecCcCcchhhe
Confidence 45555555544 6999999999998 789999999999999987655433
No 107
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=1.5e-29 Score=211.74 Aligned_cols=230 Identities=17% Similarity=0.183 Sum_probs=186.2
Q ss_pred Cce-eeEEEEEe--eCCcceEEEEecCCCCCCCCCceEEEEEcCCCCcee--cCCeEEeeecCCCCCceEEEECCCCCeE
Q 024868 4 GGT-VTCGSWIK--RPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY--TSPLVTYVFDESEGDPMTIAVNPSGDDF 78 (261)
Q Consensus 4 ~~~-v~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l 78 (261)
..+ |++++|+| + ..++++|+.++ .+..||..++... ........+..|...|.+++|+|++++|
T Consensus 63 ~~~~v~~~~~sp~~~---~~~l~s~~~dg--------~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 131 (615)
T 1pgu_A 63 GSSVVTTVKFSPIKG---SQYLCSGDESG--------KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRL 131 (615)
T ss_dssp TTSCEEEEEECSSTT---CCEEEEEETTS--------EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred CCceEEEEEECcCCC---CCEEEEecCCC--------EEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEE
Confidence 466 99999999 6 45899999998 7777777533000 0112245677899999999999999999
Q ss_pred EEEecC----CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCc-EEEEeccCCeEEEEEccCceEEeecccc
Q 024868 79 VCSTTN----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPSLRIILDEPKA 153 (261)
Q Consensus 79 ~~~~~d----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 153 (261)
++++.+ +.|++|| .+... .....|...|.+++|+|+++ .+++++.|+.|++||+.+++....+..|
T Consensus 132 ~~~~~~~~~~~~v~~~d--~~~~~-------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~ 202 (615)
T 1pgu_A 132 CVVGEGRDNFGVFISWD--SGNSL-------GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH 202 (615)
T ss_dssp EEEECCSSCSEEEEETT--TCCEE-------EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSS
T ss_pred EEeccCCCCccEEEEEE--CCCcc-------eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeeccc
Confidence 999887 6888888 22221 12234678999999999998 7999999999999999999988888888
Q ss_pred CC---ceeEEEEcCC-CCEEEEecCCCcEEEEEccCCcEEEEEee---cCCCceEEEEEecCCCcceEEEEEeeCCCcEE
Q 024868 154 HK---SVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTR---NSDEKIELCRFSKDGTKPFLFCTVQRGDKALL 226 (261)
Q Consensus 154 ~~---~v~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i 226 (261)
.. .|.+++|+|+ +++|++++.|+.|++||+++++.+..+.. .+...|.+++|+ ++++ +++++.|+.|
T Consensus 203 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~-----l~~~~~d~~i 276 (615)
T 1pgu_A 203 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQK-----FATVGADATI 276 (615)
T ss_dssp SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSE-----EEEEETTSEE
T ss_pred CCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCE-----EEEEcCCCcE
Confidence 88 8999999999 99999999999999999999999988832 334479999999 8887 6888999999
Q ss_pred EEEECCCCeEEeeeecc----CcCeeEEEEeeCCCEEe
Q 024868 227 AVYDISTWNKIGHKRLL----RKPASVLSISLDGKYLA 260 (261)
Q Consensus 227 ~~~d~~~~~~~~~~~~~----~~~v~~~~~s~dg~~la 260 (261)
++||+++++.+..+..+ ...+.++.|+ ++++++
T Consensus 277 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 313 (615)
T 1pgu_A 277 RVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRII 313 (615)
T ss_dssp EEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEE
T ss_pred EEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEE
Confidence 99999999988777665 3567788885 776665
No 108
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-30 Score=204.22 Aligned_cols=205 Identities=10% Similarity=0.095 Sum_probs=150.8
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCce--e--cCCeEEeeecCCCCCceEEEECC--CCCeE
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSV--Y--TSPLVTYVFDESEGDPMTIAVNP--SGDDF 78 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~--~--~~~~~~~~~~~~~~~v~~~~~~~--~~~~l 78 (261)
.+|.+++|+|. +++|+.|+ .+..|+...... . ..........+|.+.|.+++|+| +++++
T Consensus 77 ~~v~~~~~~~~------~~s~s~D~--------~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 142 (343)
T 3lrv_A 77 PNPRTGGEHPA------IISRGPCN--------RLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYF 142 (343)
T ss_dssp ECCCTTCCCCS------EEEECSTT--------EEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEE
T ss_pred CCceeeeeCCc------eEEecCCC--------eEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEE
Confidence 34555566652 78888888 777776553221 0 01111223346778999999999 99999
Q ss_pred EEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE-eeccc-cCCc
Q 024868 79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-LDEPK-AHKS 156 (261)
Q Consensus 79 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~-~~~~ 156 (261)
++++.||+|++||+.++.... .....+...+.+++|+|++++|++|+.||.|++||+++++.. ..+.. |..+
T Consensus 143 ~s~s~dg~i~~wd~~~~~~~~------~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~ 216 (343)
T 3lrv_A 143 IWADNRGTIGFQSYEDDSQYI------VHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAK 216 (343)
T ss_dssp EEEETTCCEEEEESSSSCEEE------EECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSC
T ss_pred EEEeCCCcEEEEECCCCcEEE------EEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCC
Confidence 999999999999998876411 111223457999999999999999999999999999998876 55665 7789
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeec--CCCce--EEEEEecCCCcceEEEEEeeCC-CcEEEEEEC
Q 024868 157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN--SDEKI--ELCRFSKDGTKPFLFCTVQRGD-KALLAVYDI 231 (261)
Q Consensus 157 v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~v--~~~~~~p~~~~~~~~~~~~~~~-d~~i~~~d~ 231 (261)
|.+++|+|++.+|++++. +.|++||+++++.+..+... +...+ .+++|+|+|++ +++++. |+.+++|++
T Consensus 217 v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 217 IKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN-----MIAYSNESNSLTIYKF 290 (343)
T ss_dssp EEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSE-----EEEEETTTTEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCE-----EEEecCCCCcEEEEEE
Confidence 999999999999999994 59999999988765544321 11123 36999999998 566555 899999998
Q ss_pred CCCe
Q 024868 232 STWN 235 (261)
Q Consensus 232 ~~~~ 235 (261)
.+..
T Consensus 291 ~~~~ 294 (343)
T 3lrv_A 291 DKKT 294 (343)
T ss_dssp CTTT
T ss_pred cccc
Confidence 6543
No 109
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=7e-29 Score=200.50 Aligned_cols=219 Identities=16% Similarity=0.168 Sum_probs=181.6
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
..+|.+++|.+ ..+++|+.++ .+..||..+... ...+.+|...|.+++| +++.+++++.
T Consensus 199 ~~~v~~~~~~~-----~~l~s~s~dg--------~i~~wd~~~~~~------~~~~~~~~~~v~~~~~--~~~~l~~~~~ 257 (445)
T 2ovr_B 199 TSTVRCMHLHE-----KRVVSGSRDA--------TLRVWDIETGQC------LHVLMGHVAAVRCVQY--DGRRVVSGAY 257 (445)
T ss_dssp SSCEEEEEEET-----TEEEEEETTS--------EEEEEESSSCCE------EEEEECCSSCEEEEEE--CSSCEEEEET
T ss_pred CCcEEEEEecC-----CEEEEEeCCC--------EEEEEECCCCcE------EEEEcCCcccEEEEEE--CCCEEEEEcC
Confidence 56788888854 3688888888 888888877654 5567789999999999 7888999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
||.|++||+.++..... ...|...+.++.| +++++++++.|+.|++||+++++.+..+..+...+.++.++
T Consensus 258 dg~i~iwd~~~~~~~~~-------~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 328 (445)
T 2ovr_B 258 DFMVKVWDPETETCLHT-------LQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK 328 (445)
T ss_dssp TSCEEEEEGGGTEEEEE-------ECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE
T ss_pred CCEEEEEECCCCcEeEE-------ecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe
Confidence 99999999987654211 1235678999988 78999999999999999999999888887777788888774
Q ss_pred CCCCEEEEecCCCcEEEEEccCCcEEEEEeec--CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee-
Q 024868 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRN--SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK- 240 (261)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~- 240 (261)
++++++++.|+.|++||+++++++..+..+ +...|.+++|+ +++ +++++.||.|++||+++++.+..+
T Consensus 329 --~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~-----l~s~~~dg~v~iwd~~~~~~~~~~~ 399 (445)
T 2ovr_B 329 --DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNF-----VITSSDDGTVKLWDLKTGEFIRNLV 399 (445)
T ss_dssp --TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSE-----EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred --CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCE-----EEEEeCCCeEEEEECCCCceeeeee
Confidence 679999999999999999999999888752 34469999985 455 688999999999999999988766
Q ss_pred ----eccCcCeeEEEEeeCCCEEeC
Q 024868 241 ----RLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 241 ----~~~~~~v~~~~~s~dg~~la~ 261 (261)
..+...|.+++|+|+|.+||+
T Consensus 400 ~~~~~~~~~~v~~~~~s~~~~~la~ 424 (445)
T 2ovr_B 400 TLESGGSGGVVWRIRASNTKLVCAV 424 (445)
T ss_dssp ECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred ccccCCCCceEEEEEecCCEEEEEE
Confidence 356788999999999998874
No 110
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=4.1e-29 Score=201.32 Aligned_cols=215 Identities=14% Similarity=0.192 Sum_probs=180.5
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
..+|+|++|. ..++++|+.++ .|..||..+... ...+.+|.+.|.+++| +++.|++|+.
T Consensus 133 ~~~v~~~~~d-----~~~l~~g~~dg--------~i~iwd~~~~~~------~~~~~~h~~~v~~l~~--~~~~l~sg~~ 191 (435)
T 1p22_A 133 SKGVYCLQYD-----DQKIVSGLRDN--------TIKIWDKNTLEC------KRILTGHTGSVLCLQY--DERVIITGSS 191 (435)
T ss_dssp CCCEEEEECC-----SSEEEEEESSS--------CEEEEESSSCCE------EEEECCCSSCEEEEEC--CSSEEEEEET
T ss_pred CCcEEEEEEC-----CCEEEEEeCCC--------eEEEEeCCCCeE------EEEEcCCCCcEEEEEE--CCCEEEEEcC
Confidence 3568888872 45899999999 888888877665 5678899999999999 7889999999
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE---eeccccCCceeEE
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII---LDEPKAHKSVLDM 160 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~---~~~~~~~~~v~~~ 160 (261)
||.|++||+.+++.... ...|...|.+++|+ +..+++++.||.|++||+.+++.. .....|...|.++
T Consensus 192 dg~i~vwd~~~~~~~~~-------~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~ 262 (435)
T 1p22_A 192 DSTVRVWDVNTGEMLNT-------LIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 262 (435)
T ss_dssp TSCEEEEESSSCCEEEE-------ECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEE
T ss_pred CCeEEEEECCCCcEEEE-------EcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEE
Confidence 99999999988764221 12456789999997 458999999999999999877643 4456677789999
Q ss_pred EEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868 161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (261)
Q Consensus 161 ~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~ 240 (261)
+| +++++++++.|+.|++||+++++.+..+..|.. .+.++.|+ +++ +++++.||.|++||+++++.+..+
T Consensus 263 ~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~--~~~-----l~~g~~dg~i~iwd~~~~~~~~~~ 332 (435)
T 1p22_A 263 DF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRL-----VVSGSSDNTIRLWDIECGACLRVL 332 (435)
T ss_dssp EE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTE-----EEEEETTSCEEEEETTTCCEEEEE
T ss_pred Ee--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCC-cEEEEEeC--CCE-----EEEEeCCCeEEEEECCCCCEEEEE
Confidence 99 788999999999999999999999999987765 59999884 565 688999999999999999999888
Q ss_pred eccCcCeeEEEEeeCCCEEe
Q 024868 241 RLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 241 ~~~~~~v~~~~~s~dg~~la 260 (261)
..|...+.+++| ++++|+
T Consensus 333 ~~h~~~v~~~~~--~~~~l~ 350 (435)
T 1p22_A 333 EGHEELVRCIRF--DNKRIV 350 (435)
T ss_dssp CCCSSCEEEEEC--CSSEEE
T ss_pred eCCcCcEEEEEe--cCCEEE
Confidence 899999999998 677776
No 111
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.2e-28 Score=195.71 Aligned_cols=223 Identities=13% Similarity=0.137 Sum_probs=174.9
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST- 82 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 82 (261)
...+.+++|+|+. ..++++++.++ .|..||..+.+. ...+..+. .+.+++|+|++++|++++
T Consensus 31 ~~~~~~~~~s~dg--~~l~~~~~~d~--------~i~v~d~~~~~~------~~~~~~~~-~v~~~~~spdg~~l~~~~~ 93 (391)
T 1l0q_A 31 GSNPMGAVISPDG--TKVYVANAHSN--------DVSIIDTATNNV------IATVPAGS-SPQGVAVSPDGKQVYVTNM 93 (391)
T ss_dssp SSSEEEEEECTTS--SEEEEEEGGGT--------EEEEEETTTTEE------EEEEECSS-SEEEEEECTTSSEEEEEET
T ss_pred CCCcceEEECCCC--CEEEEECCCCC--------eEEEEECCCCeE------EEEEECCC-CccceEECCCCCEEEEEEC
Confidence 4457899999863 44557777888 899999987764 33444443 899999999999886554
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEE-EEeccCCeEEEEEccCceEEeeccccCCceeEEE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~ 161 (261)
.++.|++||+.+++.. ..+.+...+.+++|+|+++.+ ++++.++.|++||+.+++....+. .+..+.+++
T Consensus 94 ~~~~v~v~d~~~~~~~--------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~ 164 (391)
T 1l0q_A 94 ASSTLSVIDTTSNTVA--------GTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS-VGRSPKGIA 164 (391)
T ss_dssp TTTEEEEEETTTTEEE--------EEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CCSSEEEEE
T ss_pred CCCEEEEEECCCCeEE--------EEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe-cCCCcceEE
Confidence 5699999999887642 122234578999999999977 677789999999999888765544 345679999
Q ss_pred EcCCCCEE-EEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeC---CCcEEEEEECCCCeEE
Q 024868 162 FSLDSEFL-ATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG---DKALLAVYDISTWNKI 237 (261)
Q Consensus 162 ~s~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~---~d~~i~~~d~~~~~~~ 237 (261)
|+|+++++ ++++.++.|++||+++++.+..+..+ ..+.+++|+|+++++ +.++ .++.|++||+++++.+
T Consensus 165 ~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~~g~~l-----~~~~~~~~~~~v~~~d~~~~~~~ 237 (391)
T 1l0q_A 165 VTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE--AAPSGIAVNPEGTKA-----YVTNVDKYFNTVSMIDTGTNKIT 237 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS--SEEEEEEECTTSSEE-----EEEEECSSCCEEEEEETTTTEEE
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecC--CCccceEECCCCCEE-----EEEecCcCCCcEEEEECCCCeEE
Confidence 99999887 57788899999999999888777633 358999999999983 3333 6899999999999888
Q ss_pred eeeeccCcCeeEEEEeeCCCEEe
Q 024868 238 GHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 238 ~~~~~~~~~v~~~~~s~dg~~la 260 (261)
..+..+ ..+.+++|+|||++|+
T Consensus 238 ~~~~~~-~~~~~~~~s~dg~~l~ 259 (391)
T 1l0q_A 238 ARIPVG-PDPAGIAVTPDGKKVY 259 (391)
T ss_dssp EEEECC-SSEEEEEECTTSSEEE
T ss_pred EEEecC-CCccEEEEccCCCEEE
Confidence 766654 4578999999999874
No 112
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=4.4e-29 Score=201.15 Aligned_cols=219 Identities=12% Similarity=0.205 Sum_probs=182.9
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
..++|.+++|. ..++++|+.++ .|..||..++.. ...+.+|...|.+++|++ +.+++++
T Consensus 172 h~~~v~~l~~~-----~~~l~sg~~dg--------~i~vwd~~~~~~------~~~~~~h~~~v~~l~~~~--~~l~s~s 230 (435)
T 1p22_A 172 HTGSVLCLQYD-----ERVIITGSSDS--------TVRVWDVNTGEM------LNTLIHHCEAVLHLRFNN--GMMVTCS 230 (435)
T ss_dssp CSSCEEEEECC-----SSEEEEEETTS--------CEEEEESSSCCE------EEEECCCCSCEEEEECCT--TEEEEEE
T ss_pred CCCcEEEEEEC-----CCEEEEEcCCC--------eEEEEECCCCcE------EEEEcCCCCcEEEEEEcC--CEEEEee
Confidence 35789999992 45899999999 888888877665 566788999999999974 5899999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 162 (261)
.||.|++||+.+...... ......|...|.+++| +++++++++.||.|++||+++++.+..+..|...+.++.|
T Consensus 231 ~dg~i~vwd~~~~~~~~~----~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 304 (435)
T 1p22_A 231 KDRSIAVWDMASPTDITL----RRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY 304 (435)
T ss_dssp TTSCEEEEECSSSSCCEE----EEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred CCCcEEEEeCCCCCCcee----eeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe
Confidence 999999999987654211 0122345678999988 6889999999999999999999988888888889999998
Q ss_pred cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe-------
Q 024868 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN------- 235 (261)
Q Consensus 163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~------- 235 (261)
+ ++++++++.|+.|++||+++++++..+..|.. .|.+++| ++++ +++++.||.|++||+++++
T Consensus 305 ~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~--~~~~-----l~sg~~dg~i~vwd~~~~~~~~~~~~ 374 (435)
T 1p22_A 305 R--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-LVRCIRF--DNKR-----IVSGAYDGKIKVWDLVAALDPRAPAG 374 (435)
T ss_dssp E--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEC--CSSE-----EEEEETTSCEEEEEHHHHTSTTSCTT
T ss_pred C--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC-cEEEEEe--cCCE-----EEEEeCCCcEEEEECCCCCCcccccc
Confidence 4 78999999999999999999999999987765 6999988 6776 6889999999999997665
Q ss_pred --EEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 236 --KIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 236 --~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
.+..+..|...|.+++| ++++|+
T Consensus 375 ~~~~~~~~~h~~~v~~l~~--~~~~l~ 399 (435)
T 1p22_A 375 TLCLRTLVEHSGRVFRLQF--DEFQIV 399 (435)
T ss_dssp TTEEEEECCCSSCCCCEEE--CSSCEE
T ss_pred chheeeccCCCCCeEEEEe--CCCEEE
Confidence 67778889999999999 666665
No 113
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=5.4e-29 Score=189.30 Aligned_cols=210 Identities=12% Similarity=0.085 Sum_probs=144.4
Q ss_pred CceeeEEEEEeeCCc-ceEEEEecCCC--------------CCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceE
Q 024868 4 GGTVTCGSWIKRPEN-VNLVVLGKSSR--------------ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMT 68 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~-~~~~~~g~~~~--------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 68 (261)
..+|..++++|+.+. ...++.++.+. ..+.+..+++|.+.++... ...+..|...+..
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~-------~~s~~~~~~~v~~ 183 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGG-------KENQFLMPPEETI 183 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCE-------EEEEEECCCSSCE
T ss_pred ccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCce-------eeeeccCCCceee
Confidence 357888888886211 33445444311 0123455566665544332 3456678888999
Q ss_pred EEECC---CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEE------------EEeccC
Q 024868 69 IAVNP---SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF------------AAGGVD 133 (261)
Q Consensus 69 ~~~~~---~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l------------~~~~~d 133 (261)
++|+| ++..|++++.|++|++||+.+++....+... ..+...+.+++|+|+|+++ ++|+.|
T Consensus 184 l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~----~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D 259 (356)
T 2w18_A 184 LTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHID----DSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPV 259 (356)
T ss_dssp EEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECC----C---CCCEEEEEEETTEEEEEEC------------CC
T ss_pred EEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCC----CcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCC
Confidence 99998 7799999999999999999998753332110 0112467888999999987 557789
Q ss_pred CeEEEEEccCceEEeec-----cccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecC
Q 024868 134 GHLRIMHWPSLRIILDE-----PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD 208 (261)
Q Consensus 134 ~~i~~~d~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~ 208 (261)
+++++||..+++.+..+ .+|...+.+..+ ++.++++++.|++|+|||+.+++++.++.+|....+..++|+||
T Consensus 260 ~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPD 337 (356)
T 2w18_A 260 FQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGT 337 (356)
T ss_dssp EEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSS
T ss_pred cEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCC
Confidence 99999999988875433 133334444444 48899999999999999999999999998877654556899999
Q ss_pred CCcceEEEEEeeCCCcEEEEEEC
Q 024868 209 GTKPFLFCTVQRGDKALLAVYDI 231 (261)
Q Consensus 209 ~~~~~~~~~~~~~~d~~i~~~d~ 231 (261)
|++ +++++.|++|+|||+
T Consensus 338 G~~-----LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 338 DSH-----LLAGQKDGNIFVYHY 355 (356)
T ss_dssp SSE-----EEEECTTSCEEEEEE
T ss_pred CCE-----EEEEECCCcEEEecC
Confidence 998 799999999999996
No 114
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=3.6e-28 Score=195.53 Aligned_cols=229 Identities=16% Similarity=0.115 Sum_probs=178.4
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST- 82 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 82 (261)
.++|.+++|.++ ..++++++.++ .+..||..+... ...+..|...+.+++|+|+++.+++++
T Consensus 169 ~~~v~~~~~~~~---~~~~~s~~~d~--------~v~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (433)
T 3bws_A 169 LGFVETISIPEH---NELWVSQMQAN--------AVHVFDLKTLAY------KATVDLTGKWSKILLYDPIRDLVYCSNW 231 (433)
T ss_dssp CCEEEEEEEGGG---TEEEEEEGGGT--------EEEEEETTTCCE------EEEEECSSSSEEEEEEETTTTEEEEEET
T ss_pred CCceeEEEEcCC---CEEEEEECCCC--------EEEEEECCCceE------EEEEcCCCCCeeEEEEcCCCCEEEEEec
Confidence 458999999764 67888898888 899999877654 445667888999999999999885544
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec--------cCCeEEEEEccCceEEeeccccC
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--------VDGHLRIMHWPSLRIILDEPKAH 154 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--------~d~~i~~~d~~~~~~~~~~~~~~ 154 (261)
.++.|++||+.+++. ...+.....+.+++|+|+++++++++ .|+.|++||+.+++.... ..+.
T Consensus 232 ~~~~i~~~d~~~~~~--------~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~-~~~~ 302 (433)
T 3bws_A 232 ISEDISVIDRKTKLE--------IRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT-IGPP 302 (433)
T ss_dssp TTTEEEEEETTTTEE--------EEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE-EEEE
T ss_pred CCCcEEEEECCCCcE--------EEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee-ccCC
Confidence 789999999987654 22233345689999999999998887 488999999998876544 3444
Q ss_pred CceeEEEEcCCCCEE-EEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEE----------EeeCCC
Q 024868 155 KSVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT----------VQRGDK 223 (261)
Q Consensus 155 ~~v~~~~~s~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~----------~~~~~d 223 (261)
..+.+++|+|+++.+ ++++.|+.|++||+.+++.+..+. + ...+.+++|+|+|+++++... ++++.|
T Consensus 303 ~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~-~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~d 380 (433)
T 3bws_A 303 GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-V-FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVL 380 (433)
T ss_dssp ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-C-SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSC
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-C-CCCCCeEEEcCCCCEEEEEecCCCccccccccccccc
Confidence 578999999999755 666889999999999998887776 3 335999999999997321100 001126
Q ss_pred cEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 224 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
|.|++||+.+++.+..+.. ...+.+++|+|||++|++
T Consensus 381 g~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~ 417 (433)
T 3bws_A 381 GKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVI 417 (433)
T ss_dssp CEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEE
T ss_pred eEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEE
Confidence 7999999999998876665 567899999999998863
No 115
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-29 Score=219.13 Aligned_cols=188 Identities=9% Similarity=0.064 Sum_probs=156.0
Q ss_pred eecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEE
Q 024868 58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR 137 (261)
Q Consensus 58 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 137 (261)
...+|.+.|.+++|+|++++||+|+.||+|++|+...... ...+.+..+|.+++|+| +++|++++.|++|+
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~--------~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~ 82 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV--------VIKLEDRSAIKEMRFVK-GIYLVVINAKDTVY 82 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE--------EEECSSCCCEEEEEEET-TTEEEEEETTCEEE
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE--------EEEcCCCCCEEEEEEcC-CCEEEEEECcCeEE
Confidence 3457899999999999999999999999999999866543 12234567899999999 88999999999999
Q ss_pred EEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEE-----------EEeecCCCceEEEEEe
Q 024868 138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT-----------FLTRNSDEKIELCRFS 206 (261)
Q Consensus 138 ~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~-----------~~~~~~~~~v~~~~~~ 206 (261)
+||+++++.+..+ .++..|.+++|+|++++|++++.||.|++||+++++... .+..| ..+|.+++|+
T Consensus 83 lWd~~~~~~~~~~-~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h-~~~V~sl~~s 160 (902)
T 2oaj_A 83 VLSLYSQKVLTTV-FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAAR-LSPIVSIQWN 160 (902)
T ss_dssp EEETTTCSEEEEE-ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSC-CCCCCEEEEE
T ss_pred EEECCCCcEEEEE-cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccC-CCCeEEEEEc
Confidence 9999998876555 366789999999999999999999999999999887641 11223 3479999999
Q ss_pred cCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc------------------CcCeeEEEEeeCCCEEeC
Q 024868 207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL------------------RKPASVLSISLDGKYLAM 261 (261)
Q Consensus 207 p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~------------------~~~v~~~~~s~dg~~la~ 261 (261)
|++... +++++.|+.| +||+++++.+..+..+ ...|.+++|+|||++||+
T Consensus 161 p~~~~~----l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~las 228 (902)
T 2oaj_A 161 PRDIGT----VLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIIT 228 (902)
T ss_dssp TTEEEE----EEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEE
T ss_pred cCCCCE----EEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEE
Confidence 975331 5788999999 9999999887766544 367999999999999874
No 116
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-28 Score=189.65 Aligned_cols=198 Identities=15% Similarity=0.181 Sum_probs=165.4
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC-CCCeEEEE
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCS 81 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 81 (261)
...+|.+++|. ..++++|+.++ .+..|| ... ....+..|...+.+++|+| +++.++++
T Consensus 103 ~~~~i~~~~~~-----~~~l~~~~~d~--------~i~~~d--~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 161 (313)
T 3odt_A 103 HQGNVCSLSFQ-----DGVVISGSWDK--------TAKVWK--EGS------LVYNLQAHNASVWDAKVVSFSENKFLTA 161 (313)
T ss_dssp CSSCEEEEEEE-----TTEEEEEETTS--------EEEEEE--TTE------EEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred cccCEEEEEec-----CCEEEEEeCCC--------CEEEEc--CCc------EEEecccCCCceeEEEEccCCCCEEEEE
Confidence 35789999993 34888999999 888888 222 2556778999999999988 89999999
Q ss_pred ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEE
Q 024868 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (261)
Q Consensus 82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~ 161 (261)
+.|+.+++||..... . .....+...+.+++|+|+++ +++++.|+.|++||+++++.+..+..|...|.+++
T Consensus 162 ~~d~~i~i~d~~~~~---~-----~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~ 232 (313)
T 3odt_A 162 SADKTIKLWQNDKVI---K-----TFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIK 232 (313)
T ss_dssp ETTSCEEEEETTEEE---E-----EECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred ECCCCEEEEecCceE---E-----EEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEE
Confidence 999999999932111 0 11122567899999999998 88999999999999999998888888888999999
Q ss_pred EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEe
Q 024868 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG 238 (261)
Q Consensus 162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~ 238 (261)
|+|++ .+++++.|+.|++||+++++++..+..+.. ++.+++|+|++++ ++++.||.|++||+++++.+.
T Consensus 233 ~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~i~~~~~~~~~~~------~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 233 LLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI-SIWSVDCMSNGDI------IVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp ECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS-CEEEEEECTTSCE------EEEETTSCEEEEESCGGGCCC
T ss_pred EecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc-eEEEEEEccCCCE------EEEeCCCcEEEEeCCCCceee
Confidence 99999 588999999999999999999999887755 6999999999984 568889999999999877653
No 117
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=8.8e-29 Score=197.16 Aligned_cols=200 Identities=13% Similarity=0.116 Sum_probs=163.4
Q ss_pred EeeecCCCCCceEEEECC-CCCeEEEEecCCcEEEEEEeCCccccceeeee------CCCCCCCCCeEEEEEee-CCcEE
Q 024868 56 TYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKK------MPPLQDAGPQKCLSFSV-DGSRF 127 (261)
Q Consensus 56 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~s~-~~~~l 127 (261)
...+.+|.+.|.+++|+| ++++|++++.||.|++||+.+........... .....|...|.+++|+| ++++|
T Consensus 36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 115 (408)
T 4a11_B 36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115 (408)
T ss_dssp EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence 346778999999999999 99999999999999999999876532221110 01123678999999999 78899
Q ss_pred EEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCC---CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEE
Q 024868 128 AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD---SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCR 204 (261)
Q Consensus 128 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 204 (261)
++++.|+.|++||+.+++..... .+...+.++.|+|. +.++++++.|+.|++||+++++.+..+..|.. .|.+++
T Consensus 116 ~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~v~~~~ 193 (408)
T 4a11_B 116 TSSSFDKTLKVWDTNTLQTADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQ-EILAVS 193 (408)
T ss_dssp EEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCS-CEEEEE
T ss_pred EEEeCCCeEEEeeCCCCccceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCC-cEEEEE
Confidence 99999999999999988876544 46678999999884 45999999999999999999999888887665 699999
Q ss_pred EecCCCcceEEEEEeeCCCcEEEEEECCCCe-EEeee---------------eccCcCeeEEEEeeCCCEEeC
Q 024868 205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHK---------------RLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 205 ~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~---------------~~~~~~v~~~~~s~dg~~la~ 261 (261)
|+|+++++ +++++.||.|++||+++++ .+..+ ..+...|.+++|+|+|++|++
T Consensus 194 ~~~~~~~l----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 262 (408)
T 4a11_B 194 WSPRYDYI----LATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLT 262 (408)
T ss_dssp ECSSCTTE----EEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEE
T ss_pred ECCCCCcE----EEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEE
Confidence 99999963 4788999999999998765 22222 457788999999999999874
No 118
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=5.8e-28 Score=186.37 Aligned_cols=211 Identities=18% Similarity=0.210 Sum_probs=167.2
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceec--------------------------------
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT-------------------------------- 51 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~-------------------------------- 51 (261)
...|+|++|+|+ ..++++|+.|+ .|..||..+.+...
T Consensus 67 ~~~V~~v~~~~~---~~~l~sgs~Dg--------~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~ 135 (318)
T 4ggc_A 67 GEYISSVAWIKE---GNYLAVGTSSA--------EVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHD 135 (318)
T ss_dssp TCCEEEEEECTT---SSEEEEEETTS--------EEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred CCeEEEEEECCC---CCEEEEEECCC--------cEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeee
Confidence 467999999995 56899999999 78888876654311
Q ss_pred ---CCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEE-
Q 024868 52 ---SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF- 127 (261)
Q Consensus 52 ---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l- 127 (261)
.......+.+|...+..+.+++++++|++++.|+.|++||+.+++...... .....+.+.|..+.++|++..+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~ 212 (318)
T 4ggc_A 136 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL---QTFTQHQGAVKAVAWCPWQSNVL 212 (318)
T ss_dssp TTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS---EEECCCCSCEEEEEECTTSTTEE
T ss_pred cCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce---eeecccCCceEEEEecCCCCcEE
Confidence 012234566788899999999999999999999999999998765422221 1122345789999999976533
Q ss_pred --EEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEe--cCCCcEEEEEccCCcEEEEEeecCCCceEEE
Q 024868 128 --AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT--STDGSARIWKTEDGVAWTFLTRNSDEKIELC 203 (261)
Q Consensus 128 --~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~ 203 (261)
++++.++.|++||........ ...+...+..+.|+|+++.++++ +.|+.|++||+++++++.++.+|.. .|+++
T Consensus 213 ~~~~~~~~~~i~lwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~-~V~~l 290 (318)
T 4ggc_A 213 ATGGGTSDRHIRIWNVCSGACLS-AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS-RVLSL 290 (318)
T ss_dssp EEEECTTTCEEEEEETTTCCEEE-EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS-CEEEE
T ss_pred EEEecCCCCEEEEEecccccccc-cccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC-CEEEE
Confidence 456788999999998877643 44566689999999999887765 4789999999999999999998766 69999
Q ss_pred EEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (261)
Q Consensus 204 ~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~ 235 (261)
+|+|+|++ +++++.|++|++||+.+..
T Consensus 291 ~~spdg~~-----l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 291 TMSPDGAT-----VASAAADETLRLWRCFELD 317 (318)
T ss_dssp EECTTSSC-----EEEEETTTEEEEECCSCCC
T ss_pred EEcCCCCE-----EEEEecCCeEEEEECCCCC
Confidence 99999998 7999999999999997643
No 119
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=9.3e-28 Score=190.61 Aligned_cols=212 Identities=17% Similarity=0.188 Sum_probs=169.9
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeE-EEEecCCcEEEEEEeCCcc
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVYGGAT 97 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~~~~~~~~ 97 (261)
..++++++.++ .|..||..+.+. ...+..| ..+.+++|+|+++++ ++++.++.|++||+.+++.
T Consensus 2 ~~l~vs~~~d~--------~v~v~d~~~~~~------~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~ 66 (391)
T 1l0q_A 2 TFAYIANSESD--------NISVIDVTSNKV------TATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66 (391)
T ss_dssp EEEEEEETTTT--------EEEEEETTTTEE------EEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred CEEEEEcCCCC--------EEEEEECCCCeE------EEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE
Confidence 35788888888 999999987765 4455555 458999999999987 5666899999999987764
Q ss_pred ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEe-ccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEE-EEecCC
Q 024868 98 DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFL-ATTSTD 175 (261)
Q Consensus 98 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d 175 (261)
. ..+.....+.+++|+|++++|+++ ..++.|++||+.+++...... ++..+.+++|+|+++++ ++++.+
T Consensus 67 ~--------~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~ 137 (391)
T 1l0q_A 67 I--------ATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGD 137 (391)
T ss_dssp E--------EEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTT
T ss_pred E--------EEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-CCCCcceEEECCCCCEEEEEeCCC
Confidence 2 222234489999999999987554 467999999999888765443 45678999999999977 678889
Q ss_pred CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeC
Q 024868 176 GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD 255 (261)
Q Consensus 176 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~d 255 (261)
+.|++||+.+++.+..+..+. .+..++|+|+++++ +++++.++.|++||+++++.+..+. +...+.+++|+|+
T Consensus 138 ~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~~dg~~l----~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~ 210 (391)
T 1l0q_A 138 KTVSVINTVTKAVINTVSVGR--SPKGIAVTPDGTKV----YVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPE 210 (391)
T ss_dssp TEEEEEETTTTEEEEEEECCS--SEEEEEECTTSSEE----EEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTT
T ss_pred CEEEEEECCCCcEEEEEecCC--CcceEEECCCCCEE----EEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCC
Confidence 999999999999888877543 47999999999973 3677889999999999998776554 4567899999999
Q ss_pred CCEEeC
Q 024868 256 GKYLAM 261 (261)
Q Consensus 256 g~~la~ 261 (261)
|++|++
T Consensus 211 g~~l~~ 216 (391)
T 1l0q_A 211 GTKAYV 216 (391)
T ss_dssp SSEEEE
T ss_pred CCEEEE
Confidence 998763
No 120
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1e-27 Score=182.29 Aligned_cols=182 Identities=7% Similarity=-0.007 Sum_probs=129.2
Q ss_pred CceEEEECCC----CCeEEEEec--------------------CCcEEEEEEeC-CccccceeeeeCCCCCCCCCeEEEE
Q 024868 65 DPMTIAVNPS----GDDFVCSTT--------------------NGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLS 119 (261)
Q Consensus 65 ~v~~~~~~~~----~~~l~~~~~--------------------dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~ 119 (261)
.|..++++|| ++.+++++. |+.|++|++.. ++... ....+...+..++
T Consensus 113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~-------s~~~~~~~v~~l~ 185 (356)
T 2w18_A 113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKE-------NQFLMPPEETILT 185 (356)
T ss_dssp EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEE-------EEEECCCSSCEEE
T ss_pred ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceee-------eeccCCCceeeEE
Confidence 4677778888 777777653 66666777633 22111 1112345677888
Q ss_pred Eee---CCcEEEEeccCCeEEEEEccCceEEeeccccCC---ceeEEEEcCCCCEE------------EEecCCCcEEEE
Q 024868 120 FSV---DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK---SVLDMDFSLDSEFL------------ATTSTDGSARIW 181 (261)
Q Consensus 120 ~s~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l------------~~~~~d~~i~iw 181 (261)
|+| ++.+|++++.|++|++||+++++.+..+..++. .+.+++|+|+|+++ ++++.|++|++|
T Consensus 186 fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklW 265 (356)
T 2w18_A 186 FAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVI 265 (356)
T ss_dssp EEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEE
T ss_pred eeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEE
Confidence 888 779999999999999999999998877765543 57788999999986 567789999999
Q ss_pred EccCCcEEEEEe-----ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCee-EEEEeeC
Q 024868 182 KTEDGVAWTFLT-----RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPAS-VLSISLD 255 (261)
Q Consensus 182 d~~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~-~~~~s~d 255 (261)
|..+++.+..+. +|.. .+.+.. .++.. +++++.|++|+|||+.+++.+.++..|...+. .++||||
T Consensus 266 d~~tgk~l~v~~~~~p~Gh~~-~~lsg~--~sg~~-----lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPD 337 (356)
T 2w18_A 266 NPKTTLSVGVMLYCLPPGQAG-RFLEGD--VKDHC-----AAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGT 337 (356)
T ss_dssp ETTTTEEEEEEEECCCTTCCC-CEEEEE--EETTE-----EEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSS
T ss_pred ECCCCEEEEEEEeeccCCCcc-eeEccc--cCCCE-----EEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCC
Confidence 999999877653 2222 233333 33665 68899999999999999999988887776554 6899999
Q ss_pred CCEEeC
Q 024868 256 GKYLAM 261 (261)
Q Consensus 256 g~~la~ 261 (261)
|++||+
T Consensus 338 G~~LaS 343 (356)
T 2w18_A 338 DSHLLA 343 (356)
T ss_dssp SSEEEE
T ss_pred CCEEEE
Confidence 999973
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=3.7e-28 Score=195.40 Aligned_cols=230 Identities=13% Similarity=0.057 Sum_probs=179.6
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
..+.+++|+| +..++++++.++ .++.||..+++.... .....+.+|.+.|.+++|+|+++.+++++.|
T Consensus 123 ~~~~~~~~s~---~~~~~~~~~~~~--------~i~~~d~~~g~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d 190 (433)
T 3bws_A 123 FQPKSVRFID---NTRLAIPLLEDE--------GMDVLDINSGQTVRL-SPPEKYKKKLGFVETISIPEHNELWVSQMQA 190 (433)
T ss_dssp SCBCCCEESS---SSEEEEEBTTSS--------SEEEEETTTCCEEEE-CCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG
T ss_pred CCceEEEEeC---CCeEEEEeCCCC--------eEEEEECCCCeEeee-cCcccccccCCceeEEEEcCCCEEEEEECCC
Confidence 3456788887 366777777777 788889887664110 0001356788999999999999999999999
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEE-eccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
+.|++||+.+++..... ..+...+.+++|+|+++.+++ ++.++.|++||+++++....+. .+..+.+++|+
T Consensus 191 ~~v~~~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~ 262 (433)
T 3bws_A 191 NAVHVFDLKTLAYKATV-------DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD-KIGLPRGLLLS 262 (433)
T ss_dssp TEEEEEETTTCCEEEEE-------ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC-CCSEEEEEEEC
T ss_pred CEEEEEECCCceEEEEE-------cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec-CCCCceEEEEc
Confidence 99999999876542211 134568899999999988754 4579999999999888765544 45579999999
Q ss_pred CCCCEEEEec--------CCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868 164 LDSEFLATTS--------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (261)
Q Consensus 164 ~~~~~l~~~~--------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~ 235 (261)
|+++++++++ .|+.|++||+++++.+..+... . .+.+++|+|+++.+ +++++.++.|++||+++++
T Consensus 263 ~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~g~~l----~~~~~~~~~v~v~d~~~~~ 336 (433)
T 3bws_A 263 KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP-G-NKRHIVSGNTENKI----YVSDMCCSKIEVYDLKEKK 336 (433)
T ss_dssp TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE-E-CEEEEEECSSTTEE----EEEETTTTEEEEEETTTTE
T ss_pred CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC-C-CcceEEECCCCCEE----EEEecCCCEEEEEECCCCc
Confidence 9999998887 4889999999999887766432 2 58899999999873 4667889999999999988
Q ss_pred EEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 236 KIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 236 ~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
.+..+. +...+.+++|+|||++|++
T Consensus 337 ~~~~~~-~~~~~~~~~~s~dg~~l~~ 361 (433)
T 3bws_A 337 VQKSIP-VFDKPNTIALSPDGKYLYV 361 (433)
T ss_dssp EEEEEE-CSSSEEEEEECTTSSEEEE
T ss_pred EEEEec-CCCCCCeEEEcCCCCEEEE
Confidence 876554 6678899999999998763
No 122
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=2.1e-27 Score=191.88 Aligned_cols=216 Identities=14% Similarity=0.243 Sum_probs=180.3
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 82 (261)
..++|.+++|++ .++++|+.++ .|..||..+... ...+.+|...|.+++|+ ++.+++++
T Consensus 158 h~~~v~~~~~~~-----~~l~s~~~dg--------~i~vwd~~~~~~------~~~~~~h~~~v~~~~~~--~~~l~s~s 216 (445)
T 2ovr_B 158 HTGGVWSSQMRD-----NIIISGSTDR--------TLKVWNAETGEC------IHTLYGHTSTVRCMHLH--EKRVVSGS 216 (445)
T ss_dssp CSSCEEEEEEET-----TEEEEEETTS--------CEEEEETTTTEE------EEEECCCSSCEEEEEEE--TTEEEEEE
T ss_pred CCCCEEEEEecC-----CEEEEEeCCC--------eEEEEECCcCcE------EEEECCCCCcEEEEEec--CCEEEEEe
Confidence 357889999973 3889999999 888888877664 56678899999999995 56799999
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 162 (261)
.||.|++||+.+++.... ...+...+.+++| +++++++++.|+.|++||+++++.+..+..|...+.++.|
T Consensus 217 ~dg~i~~wd~~~~~~~~~-------~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 287 (445)
T 2ovr_B 217 RDATLRVWDIETGQCLHV-------LMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF 287 (445)
T ss_dssp TTSEEEEEESSSCCEEEE-------EECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE
T ss_pred CCCEEEEEECCCCcEEEE-------EcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE
Confidence 999999999988764221 1235678999988 7889999999999999999999988888888889999999
Q ss_pred cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (261)
Q Consensus 163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~ 242 (261)
+++++++++.|+.|++||+++++++..+..+.. .+.++.+ ++++ +++++.||.|++||+++++.+..+..
T Consensus 288 --~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~--~~~~-----l~~~~~dg~i~vwd~~~~~~~~~~~~ 357 (445)
T 2ovr_B 288 --DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS-LTSGMEL--KDNI-----LVSGNADSTVKIWDIKTGQCLQTLQG 357 (445)
T ss_dssp --CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS-CEEEEEE--ETTE-----EEEEETTSCEEEEETTTCCEEEEECS
T ss_pred --CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc-cEEEEEE--eCCE-----EEEEeCCCeEEEEECCCCcEEEEEcc
Confidence 789999999999999999999999999887755 5777766 4566 68899999999999999998877765
Q ss_pred ---cCcCeeEEEEeeCCCEEe
Q 024868 243 ---LRKPASVLSISLDGKYLA 260 (261)
Q Consensus 243 ---~~~~v~~~~~s~dg~~la 260 (261)
+...|.+++|+ +++|+
T Consensus 358 ~~~~~~~v~~~~~~--~~~l~ 376 (445)
T 2ovr_B 358 PNKHQSAVTCLQFN--KNFVI 376 (445)
T ss_dssp TTSCSSCEEEEEEC--SSEEE
T ss_pred CCCCCCCEEEEEEC--CCEEE
Confidence 67889999985 46665
No 123
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-28 Score=210.40 Aligned_cols=194 Identities=15% Similarity=0.161 Sum_probs=158.3
Q ss_pred eeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC--CcEEEEeccCC
Q 024868 57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDG 134 (261)
Q Consensus 57 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~ 134 (261)
..+.+|.+.|++++|+|++++|++++.||.|++||+.+..... ......|..+|.+++|+|+ +++|++++.||
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~-----~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKL-----IDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEE-----EEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCcc-----ceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence 3578999999999999999999999999999999998543211 1122346789999999998 99999999999
Q ss_pred eEEEEEccCce--EEeeccccCCceeEEEEcCC--CCEEEEecCCCcEEEEEccCCc--EEEEEeecCCCceEEEEEec-
Q 024868 135 HLRIMHWPSLR--IILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGV--AWTFLTRNSDEKIELCRFSK- 207 (261)
Q Consensus 135 ~i~~~d~~~~~--~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~p- 207 (261)
.|++||+.+++ .......|...|.+++|+|+ ++++++++.||.|++||++++. ....+..+. ..|.+++|+|
T Consensus 78 ~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~-~~v~~l~~~p~ 156 (753)
T 3jro_A 78 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA-IGVNSASWAPA 156 (753)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCS-SCEEEEEECCC
T ss_pred eEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCC-CceEEEEecCc
Confidence 99999999886 55666677789999999999 9999999999999999998773 333444444 4699999999
Q ss_pred ------------CCCcceEEEEEeeCCCcEEEEEECCCC----eEEeeeeccCcCeeEEEEeeC---CCEEeC
Q 024868 208 ------------DGTKPFLFCTVQRGDKALLAVYDISTW----NKIGHKRLLRKPASVLSISLD---GKYLAM 261 (261)
Q Consensus 208 ------------~~~~~~~~~~~~~~~d~~i~~~d~~~~----~~~~~~~~~~~~v~~~~~s~d---g~~la~ 261 (261)
+++. +++++.||.|++||++++ .....+..|...|.+++|+|+ +++|++
T Consensus 157 ~~~~~~~~~~~~d~~~-----l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s 224 (753)
T 3jro_A 157 TIEEDGEHNGTKESRK-----FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224 (753)
T ss_dssp C---------CGGGCC-----EEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred ccccccccccCCCCCE-----EEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE
Confidence 4777 688999999999999876 445566788899999999999 888763
No 124
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=2.2e-27 Score=186.48 Aligned_cols=199 Identities=15% Similarity=0.132 Sum_probs=154.6
Q ss_pred EeeecCCCCCceEEEECCC---CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc
Q 024868 56 TYVFDESEGDPMTIAVNPS---GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV 132 (261)
Q Consensus 56 ~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 132 (261)
...+.+|.+.|.+++|+|+ |++|++++.||.|++||+.+...... .....|...|.+++|+|++++|++++.
T Consensus 32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP-----KAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE-----EEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE-----EEeccccCCEEEEEECcCCCEEEEEcC
Confidence 4568899999999999999 69999999999999999987332110 111235689999999999999999999
Q ss_pred CCeEEEEEccCceEEeeccccCCceeEEEE--cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC-------------
Q 024868 133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDF--SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD------------- 197 (261)
Q Consensus 133 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------------- 197 (261)
||.|++||+++++... ...|...|.+++| +|++++|++++.|+.|++||+++++++..+..+..
T Consensus 107 dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (368)
T 3mmy_A 107 DKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVV 185 (368)
T ss_dssp TSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEE
T ss_pred CCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEE
Confidence 9999999999888754 5667789999999 89999999999999999999998887766654321
Q ss_pred ---------------------------CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC---eEEeeeeccCc--
Q 024868 198 ---------------------------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW---NKIGHKRLLRK-- 245 (261)
Q Consensus 198 ---------------------------~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~---~~~~~~~~~~~-- 245 (261)
.....+++.++.... ...+++++.|+.|++||++.. +.+..+..+..
T Consensus 186 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 264 (368)
T 3mmy_A 186 ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNK-PTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNG 264 (368)
T ss_dssp EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSC-EEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC-
T ss_pred EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCC-CCeEEEecCCCcEEEEecCCCCccccceeeeeeeccc
Confidence 123344444433320 011578889999999999887 33445555554
Q ss_pred ----------CeeEEEEeeCCCEEeC
Q 024868 246 ----------PASVLSISLDGKYLAM 261 (261)
Q Consensus 246 ----------~v~~~~~s~dg~~la~ 261 (261)
.+.+++|+|++++|++
T Consensus 265 ~~~~~~~~~~~v~~~~~sp~~~~l~s 290 (368)
T 3mmy_A 265 TNTSAPQDIYAVNGIAFHPVHGTLAT 290 (368)
T ss_dssp ---CCCEEECCEEEEEECTTTCCEEE
T ss_pred ccccccccccceEEEEEecCCCEEEE
Confidence 6999999999998874
No 125
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1.7e-27 Score=189.36 Aligned_cols=208 Identities=9% Similarity=-0.011 Sum_probs=144.9
Q ss_pred CceeeEEEEEeeC-----CcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCC-e
Q 024868 4 GGTVTCGSWIKRP-----ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-D 77 (261)
Q Consensus 4 ~~~v~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 77 (261)
.++|.+++|+|.. .+..++|+|+.|+ .+..||..+... ...+..|...+.+++|+|++. +
T Consensus 136 ~~~v~~v~~~p~~~~~~~~d~~~las~s~D~--------tv~~Wd~~~~~~------~~~~~~~~~~v~~v~~~p~~~~~ 201 (393)
T 4gq1_A 136 HNFVNDIDIADVYSADNRLAEQVIASVGDDC--------TLIIWRLTDEGP------ILAGYPLSSPGISVQFRPSNPNQ 201 (393)
T ss_dssp SSCEEEEEEEEEECTTCSEEEEEEEEEETTS--------EEEEEEEETTEE------EEEEEECSSCEEEEEEETTEEEE
T ss_pred CCceEEEEEccccccccCCCCCEEEEEECCC--------eEEEEECCCCce------eeeecCCCCCcEEEEECCCCCce
Confidence 5789999999832 2367999999999 888888765543 445667889999999999874 7
Q ss_pred EEEEecCCcEEEEEEeCCccccceeee------------------eCCCCCCCCCeEEEEEe-eCCcEEEEeccCCeEEE
Q 024868 78 FVCSTTNGGCKLFEVYGGATDINLLAK------------------KMPPLQDAGPQKCLSFS-VDGSRFAAGGVDGHLRI 138 (261)
Q Consensus 78 l~~~~~dg~i~i~~~~~~~~~~~~~~~------------------~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d~~i~~ 138 (261)
|++++.|++|++||+.+++........ ......+...+.++.|+ ||++.|++++.|+++++
T Consensus 202 l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~v 281 (393)
T 4gq1_A 202 LIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLR 281 (393)
T ss_dssp EEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEE
T ss_pred EEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEE
Confidence 999999999999999876542211100 01112345678899987 79999999999999999
Q ss_pred EEccCceEEeeccccCCcee------------------EEEEcC--CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCC
Q 024868 139 MHWPSLRIILDEPKAHKSVL------------------DMDFSL--DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE 198 (261)
Q Consensus 139 ~d~~~~~~~~~~~~~~~~v~------------------~~~~s~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 198 (261)
||+..++....+..+...+. ...|+| ++.++++++.|+.|++||+.++++......+..
T Consensus 282 wd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~- 360 (393)
T 4gq1_A 282 WNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM- 360 (393)
T ss_dssp EEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS-
T ss_pred EECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC-
Confidence 99987655433332222222 233433 445677889999999999999998888777655
Q ss_pred ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868 199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (261)
Q Consensus 199 ~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~ 232 (261)
+|++++|+|||++ +++++++| +.+|.+.
T Consensus 361 ~V~svafspdG~~-----LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 361 PIVDFCWHQDGSH-----LAIATEGS-VLLTRLM 388 (393)
T ss_dssp CEEEEEECTTSSE-----EEEEESSE-EEEEEEG
T ss_pred cEEEEEEcCCCCE-----EEEEeCCC-eEEEEEe
Confidence 6999999999998 67777665 6666653
No 126
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=2.9e-27 Score=185.61 Aligned_cols=187 Identities=13% Similarity=0.091 Sum_probs=143.7
Q ss_pred eecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEE-EEeccCCeE
Q 024868 58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHL 136 (261)
Q Consensus 58 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i 136 (261)
....|...|.+++|+|||++|++|+.++ +++|++........ . +...+..+++.++++.+ ++++.|++|
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~---~------~~~~~~~~~~~~~~~~~~~~~~~d~~v 83 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS---Q------EMRHLSKVRMLHRTNYVAFVTGVKEVV 83 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE---E------ECSCCCEEEECTTSSEEEEECSSTTEE
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee---e------ecCCeEEEEEcCCCCEEEEEECCccEE
Confidence 4578999999999999999999988776 88999876543111 0 11246778888888777 567788999
Q ss_pred EEEEccCceEEeeccccCCceeEEEEcCCC-----------------------------------CEEEE--ecCCCcEE
Q 024868 137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDS-----------------------------------EFLAT--TSTDGSAR 179 (261)
Q Consensus 137 ~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~-----------------------------------~~l~~--~~~d~~i~ 179 (261)
++||..+++.+..+. +...|.++.|+++. .++++ ++.||.|+
T Consensus 84 ~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~ 162 (355)
T 3vu4_A 84 HIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIH 162 (355)
T ss_dssp EEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEE
T ss_pred EEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEE
Confidence 999999988766543 55678888887653 23443 57889999
Q ss_pred EEEccCCc---------------E-EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcE-EEEEECCCCeEEeeee-
Q 024868 180 IWKTEDGV---------------A-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL-LAVYDISTWNKIGHKR- 241 (261)
Q Consensus 180 iwd~~~~~---------------~-~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~-i~~~d~~~~~~~~~~~- 241 (261)
+||+++++ + +..+..|.. +|++++|+|+|++ +++++.|++ |++||+++++.+..+.
T Consensus 163 iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~-~v~~~~~s~~g~~-----l~s~s~d~~~v~iwd~~~~~~~~~~~~ 236 (355)
T 3vu4_A 163 ITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN-PIKMVRLNRKSDM-----VATCSQDGTIIRVFKTEDGVLVREFRR 236 (355)
T ss_dssp EEECCC------------------CCEEECCCSS-CEEEEEECTTSSE-----EEEEETTCSEEEEEETTTCCEEEEEEC
T ss_pred EEECCCCCccccccccccccccCcccEEEEccCC-ceEEEEECCCCCE-----EEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence 99998765 1 566776655 6999999999998 799999998 9999999999988887
Q ss_pred c-cCcCeeEEEEeeCCCEEeC
Q 024868 242 L-LRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 242 ~-~~~~v~~~~~s~dg~~la~ 261 (261)
+ |...|.+++|+|||++||+
T Consensus 237 g~h~~~v~~~~~s~~~~~l~s 257 (355)
T 3vu4_A 237 GLDRADVVDMKWSTDGSKLAV 257 (355)
T ss_dssp TTCCSCEEEEEECTTSCEEEE
T ss_pred CCCCCcEEEEEECCCCCEEEE
Confidence 4 8899999999999999874
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=2e-26 Score=184.36 Aligned_cols=221 Identities=10% Similarity=0.032 Sum_probs=164.4
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEE-EEe
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV-CST 82 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~ 82 (261)
..+|.+++|+|+ ...+++++.++. .-.|+.||..+++. ..+..|.+.+.+++|+|||++|+ +++
T Consensus 178 ~~~v~~~~~Spd---g~~la~~s~~~~-----~~~i~~~d~~tg~~-------~~l~~~~~~~~~~~~spdg~~la~~~~ 242 (415)
T 2hqs_A 178 PQPLMSPAWSPD---GSKLAYVTFESG-----RSALVIQTLANGAV-------RQVASFPRHNGAPAFSPDGSKLAFALS 242 (415)
T ss_dssp SSCEEEEEECTT---SSEEEEEECTTS-----SCEEEEEETTTCCE-------EEEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred CCcceeeEEcCC---CCEEEEEEecCC-----CcEEEEEECCCCcE-------EEeecCCCcccCEEEcCCCCEEEEEEe
Confidence 468999999996 446666654421 12789999887663 34667788899999999999888 555
Q ss_pred cCCc--EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-CC--eEEEEEccCceEEeeccccCCce
Q 024868 83 TNGG--CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DG--HLRIMHWPSLRIILDEPKAHKSV 157 (261)
Q Consensus 83 ~dg~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~v 157 (261)
.++. |++||+.++.. .....+...+.+++|+|||++|++++. ++ .|++||+.+++. ..+..+...+
T Consensus 243 ~~g~~~i~~~d~~~~~~--------~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~ 313 (415)
T 2hqs_A 243 KTGSLNLYVMDLASGQI--------RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQN 313 (415)
T ss_dssp TTSSCEEEEEETTTCCE--------EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEE
T ss_pred cCCCceEEEEECCCCCE--------EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcc
Confidence 5554 88999887653 122234567899999999999888775 44 688889887764 3344455678
Q ss_pred eEEEEcCCCCEEEEecCC---CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCc---EEEEEEC
Q 024868 158 LDMDFSLDSEFLATTSTD---GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA---LLAVYDI 231 (261)
Q Consensus 158 ~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~---~i~~~d~ 231 (261)
.+++|+|||++|++++.+ ..|++||+.+++.. .+..+. .+.+++|+|+|++ ++.++.++ .|++||+
T Consensus 314 ~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~--~~~~~~~spdg~~-----l~~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 314 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF--LDETPSLAPNGTM-----VIYSSSQGMGSVLNLVST 385 (415)
T ss_dssp EEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS--SCEEEEECTTSSE-----EEEEEEETTEEEEEEEET
T ss_pred cCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC--CcCCeEEcCCCCE-----EEEEEcCCCccEEEEEEC
Confidence 899999999999987754 58999999988874 444442 5899999999997 34444444 8999999
Q ss_pred CCCeEEeeeeccCcCeeEEEEeeCCC
Q 024868 232 STWNKIGHKRLLRKPASVLSISLDGK 257 (261)
Q Consensus 232 ~~~~~~~~~~~~~~~v~~~~~s~dg~ 257 (261)
..+ ....+..+.+.|.+++|+|.-.
T Consensus 386 ~g~-~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 386 DGR-FKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TSC-CEEECCCSSSEEEEEEECCCCC
T ss_pred CCC-cEEEeeCCCCCCcCCccccccc
Confidence 754 4456778889999999999643
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=2.8e-26 Score=183.53 Aligned_cols=199 Identities=21% Similarity=0.163 Sum_probs=151.4
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC---cEEEEEEeCCccccceeeeeCCCCCCCCC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG---GCKLFEVYGGATDINLLAKKMPPLQDAGP 114 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (261)
.|+.||.++.. ...+..|...+.+++|+|||++|++++.++ .|++||+.+++.. ....+...
T Consensus 160 ~i~i~d~~g~~-------~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~--------~l~~~~~~ 224 (415)
T 2hqs_A 160 ELRVSDYDGYN-------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--------QVASFPRH 224 (415)
T ss_dssp EEEEEETTSCS-------CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--------EEECCSSC
T ss_pred eEEEEcCCCCC-------CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE--------EeecCCCc
Confidence 78888886544 234667888999999999999999998875 8999999887641 11223567
Q ss_pred eEEEEEeeCCcEEE-EeccCC--eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC-CC--cEEEEEccCCcE
Q 024868 115 QKCLSFSVDGSRFA-AGGVDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVA 188 (261)
Q Consensus 115 v~~~~~s~~~~~l~-~~~~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~iwd~~~~~~ 188 (261)
+.+++|+|||++|+ +++.++ .|++||+.+++. ..+..+...+.+++|+|||++|++++. ++ .|++||+.+++.
T Consensus 225 ~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~ 303 (415)
T 2hqs_A 225 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP 303 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred ccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE
Confidence 89999999999888 555555 499999988776 455666678999999999999988776 44 677889888764
Q ss_pred EEEEeecCCCceEEEEEecCCCcceEEEEEeeC-C--CcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG-D--KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 189 ~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~-~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
. .+..+ ...+.+++|+|+|+++ +.++ . +..|++||+.+++.. .+..+. .+.+++|+|||++|++
T Consensus 304 ~-~l~~~-~~~~~~~~~spdG~~l-----~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~ 370 (415)
T 2hqs_A 304 Q-RITWE-GSQNQDADVSSDGKFM-----VMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIY 370 (415)
T ss_dssp E-ECCCS-SSEEEEEEECTTSSEE-----EEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEE
T ss_pred E-EEecC-CCcccCeEECCCCCEE-----EEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEE
Confidence 3 34333 3358899999999983 3322 2 468999999988764 344443 8899999999998863
No 129
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.95 E-value=4.5e-26 Score=173.71 Aligned_cols=227 Identities=16% Similarity=0.113 Sum_probs=163.7
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCC-CceecCCeEEeeecCC-CCCceEEEECCCCCeEEEE
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKT-TSVYTSPLVTYVFDES-EGDPMTIAVNPSGDDFVCS 81 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~ 81 (261)
.+.|.+++|+|+ ..++++++ ++ .++.||..+ ... ......+ ...+.+++|+|++++|+++
T Consensus 41 ~~~v~~~~~spd---g~~l~~~~-~~--------~i~~~d~~~~~~~------~~~~~~~~~~~~~~~~~spdg~~l~~~ 102 (297)
T 2ojh_A 41 PELFEAPNWSPD---GKYLLLNS-EG--------LLYRLSLAGDPSP------EKVDTGFATICNNDHGISPDGALYAIS 102 (297)
T ss_dssp SSCCEEEEECTT---SSEEEEEE-TT--------EEEEEESSSCCSC------EECCCTTCCCBCSCCEECTTSSEEEEE
T ss_pred CcceEeeEECCC---CCEEEEEc-CC--------eEEEEeCCCCCCc------eEeccccccccccceEECCCCCEEEEE
Confidence 467899999996 44666654 56 888999877 553 3334444 4678999999999999998
Q ss_pred e--cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEE-EeccCCeEEEEEccC-ceEEeeccccCCce
Q 024868 82 T--TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIMHWPS-LRIILDEPKAHKSV 157 (261)
Q Consensus 82 ~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~i~~~d~~~-~~~~~~~~~~~~~v 157 (261)
+ .++...+|.++..... ...+.....+..++|+|++++|+ ++..++.+.+|+++. ......+..+...+
T Consensus 103 ~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 175 (297)
T 2ojh_A 103 DKVEFGKSAIYLLPSTGGT-------PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRN 175 (297)
T ss_dssp ECTTTSSCEEEEEETTCCC-------CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCE
T ss_pred EeCCCCcceEEEEECCCCc-------eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCcc
Confidence 8 3456777776543221 11222334588999999999887 667889899998642 22334555666789
Q ss_pred eEEEEcCCCCEEEEec-CCCcEEEEEcc-CCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCC-----------Cc
Q 024868 158 LDMDFSLDSEFLATTS-TDGSARIWKTE-DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-----------KA 224 (261)
Q Consensus 158 ~~~~~s~~~~~l~~~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~-----------d~ 224 (261)
.+++|+|++++|+.++ .++.+++|++. .+.....+..+.. .+..++|+|+|+++ +.++. ++
T Consensus 176 ~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l-----~~~~~~~~~~~~~~~~~~ 249 (297)
T 2ojh_A 176 DGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAY-GDWFPHPSPSGDKV-----VFVSYDADVFDHPRDLDV 249 (297)
T ss_dssp EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSE-EEEEEEECTTSSEE-----EEEEEETTCCSCCSSEEE
T ss_pred ccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCc-ccCCeEECCCCCEE-----EEEEcCCCCCcccccCce
Confidence 9999999999887665 58899999987 5556666665443 58899999999983 33322 36
Q ss_pred EEEEEECCCCeEE--eeeeccCcCeeEEEEeeCCCEEeC
Q 024868 225 LLAVYDISTWNKI--GHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 225 ~i~~~d~~~~~~~--~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
.|++||+.+++.. .....+...+..++|+|||++|++
T Consensus 250 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 288 (297)
T 2ojh_A 250 RVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAY 288 (297)
T ss_dssp EEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEE
T ss_pred EEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEE
Confidence 7999999887653 333466778999999999998873
No 130
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=2.3e-25 Score=190.56 Aligned_cols=234 Identities=12% Similarity=0.063 Sum_probs=166.1
Q ss_pred CceeeEEEEEeeCCcceEEEEecC-CCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCC-------------------
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKS-SRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE------------------- 63 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------------------- 63 (261)
..+|.+++|+|+ ...+++++. ++. .....|+.||..++.. ...+..+.
T Consensus 36 ~~~~~~~~~Spd---G~~la~~~~~d~~---~~~~~i~~~d~~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (741)
T 2ecf_A 36 GPTLMKPKVAPD---GSRVTFLRGKDSD---RNQLDLWSYDIGSGQT------RLLVDSKVVLPGTETLSDEEKARRERQ 103 (741)
T ss_dssp CCCCEEEEECTT---SSEEEEEECCSSC---TTEEEEEEEETTTCCE------EEEECGGGTC-----------------
T ss_pred CCCCCCceEecC---CCEEEEEeccCCC---CcccEEEEEECCCCce------eEccchhhcccccccccchhhhhhhhh
Confidence 456899999996 456676655 431 1123789999887664 22232222
Q ss_pred -----CCceEEEECCCCCeEEEEecCCcEEEEEEeCC---ccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCe
Q 024868 64 -----GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG---ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH 135 (261)
Q Consensus 64 -----~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 135 (261)
..+.+++|+|||++|++++. +.|++||+.++ .. .....+...+..++|||||++|++++ ++.
T Consensus 104 ~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~--------~~l~~~~~~~~~~~~SPDG~~la~~~-~~~ 173 (741)
T 2ecf_A 104 RIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAV--------RQLTHGEGFATDAKLSPKGGFVSFIR-GRN 173 (741)
T ss_dssp ---CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSC--------CBCCCSSSCEEEEEECTTSSEEEEEE-TTE
T ss_pred hhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceE--------EEcccCCcccccccCCCCCCEEEEEe-CCc
Confidence 23789999999999998876 88999999887 32 22223456799999999999999985 568
Q ss_pred EEEEEccCceEEeeccccCCc----------------eeEEEEcCCCCEEEEecCCC-----------------------
Q 024868 136 LRIMHWPSLRIILDEPKAHKS----------------VLDMDFSLDSEFLATTSTDG----------------------- 176 (261)
Q Consensus 136 i~~~d~~~~~~~~~~~~~~~~----------------v~~~~~s~~~~~l~~~~~d~----------------------- 176 (261)
|++||+.+++.......+... +..++|||||++|++++.|+
T Consensus 174 i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~ 253 (741)
T 2ecf_A 174 LWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRY 253 (741)
T ss_dssp EEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred EEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence 999999887765433333222 47899999999999987665
Q ss_pred ----------cEEEEEccC-CcEEEEEee-cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccC
Q 024868 177 ----------SARIWKTED-GVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244 (261)
Q Consensus 177 ----------~i~iwd~~~-~~~~~~~~~-~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~ 244 (261)
.|++||+.+ ++....... .+...+..++| |||+++++...-....+..|++||+.+++.......+.
T Consensus 254 ~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~ 332 (741)
T 2ecf_A 254 PAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS 332 (741)
T ss_dssp CBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC
T ss_pred CCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC
Confidence 788999988 876554332 23346899999 99998432111123457899999999988765554443
Q ss_pred c----CeeEEEEeeCCCEEe
Q 024868 245 K----PASVLSISLDGKYLA 260 (261)
Q Consensus 245 ~----~v~~~~~s~dg~~la 260 (261)
. .+..++|+|||++++
T Consensus 333 ~~~~~~~~~~~~spdg~~~~ 352 (741)
T 2ecf_A 333 PTWVPLHNSLRFLDDGSILW 352 (741)
T ss_dssp SSCCCCCSCCEECTTSCEEE
T ss_pred CCcCCcCCceEECCCCeEEE
Confidence 2 456899999999665
No 131
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=4.8e-24 Score=166.83 Aligned_cols=223 Identities=13% Similarity=0.115 Sum_probs=167.4
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCC---------CceEEEECCCCC
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG---------DPMTIAVNPSGD 76 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~ 76 (261)
.+..++|+|+. ..+++++..++ .++.||..+.+. ...+..+.. .+.+++|+|+++
T Consensus 90 ~~~~~~~s~dg--~~l~v~~~~~~--------~v~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 153 (353)
T 3vgz_A 90 KPFGATINNTT--QTLWFGNTVNS--------AVTAIDAKTGEV------KGRLVLDDRKRTEEVRPLQPRELVADDATN 153 (353)
T ss_dssp CCCSEEEETTT--TEEEEEETTTT--------EEEEEETTTCCE------EEEEESCCCCCCSSCCCCEEEEEEEETTTT
T ss_pred CcceEEECCCC--CEEEEEecCCC--------EEEEEeCCCCee------EEEEecCCCccccccCCCCCceEEECCCCC
Confidence 35567787752 44666666667 899999987764 223333221 268899999999
Q ss_pred eEEEEe--cCCcEEEEEEeCCccccceeeeeCCCCC-CCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccc-
Q 024868 77 DFVCST--TNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK- 152 (261)
Q Consensus 77 ~l~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~- 152 (261)
++++++ .++.|.+||..+++... .+. ....+.+++|+|+++++++++.++.+.+||..+++.......
T Consensus 154 ~l~~~~~~~~~~i~~~d~~~~~~~~--------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~ 225 (353)
T 3vgz_A 154 TVYISGIGKESVIWVVDGGNIKLKT--------AIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL 225 (353)
T ss_dssp EEEEEEESSSCEEEEEETTTTEEEE--------EECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred EEEEEecCCCceEEEEcCCCCceEE--------EecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC
Confidence 887776 37889999998776421 111 233467899999999999999999999999999887655443
Q ss_pred ---cCCceeEEEEcCCCCEEEEecC-CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEE
Q 024868 153 ---AHKSVLDMDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAV 228 (261)
Q Consensus 153 ---~~~~v~~~~~s~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~ 228 (261)
+...+..++|+|+++++++++. ++.|.+||..+++.+..+.... ...++|+|+|+++ .++...++.|.+
T Consensus 226 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l----~v~~~~~~~v~~ 298 (353)
T 3vgz_A 226 DDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEA----YVTHRQAGKVSV 298 (353)
T ss_dssp CSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEE----EEEETTTTEEEE
T ss_pred CCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEE----EEEECCCCeEEE
Confidence 2335788999999997776654 5899999999999888877533 3568999999973 356667899999
Q ss_pred EECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 229 YDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 229 ~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
||..+++.+..+.. ...+..++|+|||++|+
T Consensus 299 ~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~ 329 (353)
T 3vgz_A 299 IDAKSYKVVKTFDT-PTHPNSLALSADGKTLY 329 (353)
T ss_dssp EETTTTEEEEEEEC-CSEEEEEEECTTSCEEE
T ss_pred EECCCCeEEEEEec-CCCCCeEEEcCCCCEEE
Confidence 99999998766654 34678999999999775
No 132
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.94 E-value=2.6e-25 Score=178.69 Aligned_cols=189 Identities=11% Similarity=0.045 Sum_probs=143.3
Q ss_pred CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccc-------ccee-eeeCCCCCCCCCeEEEEEeeCCcEEE----Eec
Q 024868 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD-------INLL-AKKMPPLQDAGPQKCLSFSVDGSRFA----AGG 131 (261)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~-------~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~----~~~ 131 (261)
..+..+++++++.++++++.++ +++|+....... .... ......+.+...|.+++|+|++++|+ +++
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 4578899999999999998888 999886432110 0000 00011223456799999999999999 788
Q ss_pred cCCeEEEEEccCc--------e---EEeeccccCCceeEEEEcCC-CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCc
Q 024868 132 VDGHLRIMHWPSL--------R---IILDEPKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK 199 (261)
Q Consensus 132 ~d~~i~~~d~~~~--------~---~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 199 (261)
.|+.|++||+.+. + .......|...|.+++|+|+ +++|++++.|+.|++||+++++.+.....|.. .
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~-~ 194 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV-A 194 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG-C
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC-c
Confidence 8999999998765 1 12334456678999999997 88999999999999999999877655555444 6
Q ss_pred eEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc-------CcCeeEEEEeeCCCEEe
Q 024868 200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-------RKPASVLSISLDGKYLA 260 (261)
Q Consensus 200 v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~-------~~~v~~~~~s~dg~~la 260 (261)
+.+++|+|+|++ +++++.||.|++||++ ++....+..+ ...+.+++|++++.+++
T Consensus 195 v~~v~wspdg~~-----lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~ 256 (434)
T 2oit_A 195 VTSVCWSPKGKQ-----LAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAI 256 (434)
T ss_dssp EEEEEECTTSSC-----EEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEE
T ss_pred eeEEEEcCCCCE-----EEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEE
Confidence 999999999998 6889999999999998 4544434332 23789999999998874
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=1e-23 Score=164.16 Aligned_cols=232 Identities=12% Similarity=0.149 Sum_probs=152.4
Q ss_pred CceeeEEEEEeeCCcceEEEEecCC-CCCCCCCceEEEEEcCC--CCceecCCeEEeeecCCCCCceEEEECCCCCeEEE
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSS-RASSSPSVLEIFSFDPK--TTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC 80 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 80 (261)
...+.+++|+|+ ...+++++.+ + .+..|+.+ ++.+ .....+..+. .+..++|+|++++|++
T Consensus 37 ~~~~~~~~~spd---g~~l~~~~~~~~--------~v~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~s~dg~~l~~ 100 (343)
T 1ri6_A 37 PGQVQPMVVSPD---KRYLYVGVRPEF--------RVLAYRIAPDDGAL----TFAAESALPG-SLTHISTDHQGQFVFV 100 (343)
T ss_dssp SSCCCCEEECTT---SSEEEEEETTTT--------EEEEEEECTTTCCE----EEEEEEECSS-CCSEEEECTTSSEEEE
T ss_pred CCCCceEEECCC---CCEEEEeecCCC--------eEEEEEecCCCCce----eeccccccCC-CCcEEEEcCCCCEEEE
Confidence 346778889885 3445544443 5 55555543 4443 1122333333 7889999999998877
Q ss_pred Eec-CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cCCeEEEEEccC-ceEEe----ecc-c
Q 024868 81 STT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPS-LRIIL----DEP-K 152 (261)
Q Consensus 81 ~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~-~~~~~----~~~-~ 152 (261)
++. ++.|.+||+..+.. ... .........+.+++|+|+++++++++ .++.|.+||+.+ ++... ... .
T Consensus 101 ~~~~~~~i~~~d~~~~~~-~~~----~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 175 (343)
T 1ri6_A 101 GSYNAGNVSVTRLEDGLP-VGV----VDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTV 175 (343)
T ss_dssp EETTTTEEEEEEEETTEE-EEE----EEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECS
T ss_pred EecCCCeEEEEECCCCcc-ccc----cccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccC
Confidence 665 78899999963221 111 11222345688899999999888776 889999999987 54321 112 2
Q ss_pred cCCceeEEEEcCCCCEEEEe-cCCCcEEEEEccC--CcE--EEEEeecC-----CCceEEEEEecCCCcceEEEEEeeCC
Q 024868 153 AHKSVLDMDFSLDSEFLATT-STDGSARIWKTED--GVA--WTFLTRNS-----DEKIELCRFSKDGTKPFLFCTVQRGD 222 (261)
Q Consensus 153 ~~~~v~~~~~s~~~~~l~~~-~~d~~i~iwd~~~--~~~--~~~~~~~~-----~~~v~~~~~~p~~~~~~~~~~~~~~~ 222 (261)
....+..++|+|++++++++ ..++.+.+||+.. ++. ........ ...+..++|+|+|+++ +++...
T Consensus 176 ~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l----~v~~~~ 251 (343)
T 1ri6_A 176 EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL----YACDRT 251 (343)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE----EEEETT
T ss_pred CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEE----EEEecC
Confidence 23468899999999977654 4789999999953 433 22222111 1246689999999973 246667
Q ss_pred CcEEEEEECC--C--CeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 223 KALLAVYDIS--T--WNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 223 d~~i~~~d~~--~--~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
++.|.+||+. + .+.+..+.... .+..++|+|||++|++
T Consensus 252 ~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 252 ASLITVFSVSEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIA 293 (343)
T ss_dssp TTEEEEEEECTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEE
T ss_pred CCEEEEEEEcCCCCceEEeeeecCCC-ccceEEECCCCCEEEE
Confidence 8999999998 3 33444444333 4889999999998763
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=8e-24 Score=164.30 Aligned_cols=226 Identities=11% Similarity=0.061 Sum_probs=157.7
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
.++ +++|+|+. ..+++++..++ .++.||..+... ....+..+.....+++|+|+|++++++..+
T Consensus 41 ~~~-~~~~s~dg--~~l~~~~~~~~--------~i~~~d~~~~~~-----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 104 (331)
T 3u4y_A 41 DFV-DTAITSDC--SNVVVTSDFCQ--------TLVQIETQLEPP-----KVVAIQEGQSSMADVDITPDDQFAVTVTGL 104 (331)
T ss_dssp CEE-EEEECSSS--CEEEEEESTTC--------EEEEEECSSSSC-----EEEEEEECSSCCCCEEECTTSSEEEECCCS
T ss_pred Ccc-eEEEcCCC--CEEEEEeCCCC--------eEEEEECCCCce-----eEEecccCCCCccceEECCCCCEEEEecCC
Confidence 445 88998863 44556666677 899999887653 122344455555559999999999865555
Q ss_pred C---cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEe-ccCCe-EEEEEccCceEE----eeccccCC
Q 024868 85 G---GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGH-LRIMHWPSLRII----LDEPKAHK 155 (261)
Q Consensus 85 g---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~-i~~~d~~~~~~~----~~~~~~~~ 155 (261)
+ .|.+||+.+++... .+.......+++|+|+|++++++ ..++. +.+|++.....+ ........
T Consensus 105 ~~~~~i~v~d~~~~~~~~--------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 176 (331)
T 3u4y_A 105 NHPFNMQSYSFLKNKFIS--------TIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGT 176 (331)
T ss_dssp SSSCEEEEEETTTTEEEE--------EEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSS
T ss_pred CCcccEEEEECCCCCeEE--------EEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCC
Confidence 3 89999998776421 12234456899999999866655 45577 999998754332 12223344
Q ss_pred ceeEEEEcCCCCEEEE-ecCCCcEEEEEccCCcE---EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEEC
Q 024868 156 SVLDMDFSLDSEFLAT-TSTDGSARIWKTEDGVA---WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231 (261)
Q Consensus 156 ~v~~~~~s~~~~~l~~-~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~ 231 (261)
....++|+|+|++++. ...++.|++||+.+++. +..+..+ ..+..++|+|||+++ .++...++.|.+||+
T Consensus 177 ~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l----~v~~~~~~~i~~~d~ 250 (331)
T 3u4y_A 177 RPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN--NLPGTIVVSRDGSTV----YVLTESTVDVFNFNQ 250 (331)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS--SCCCCEEECTTSSEE----EEECSSEEEEEEEET
T ss_pred CccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC--CCCceEEECCCCCEE----EEEEcCCCEEEEEEC
Confidence 6899999999996654 55689999999999887 7766643 347899999999973 245556788999999
Q ss_pred CCCeE--Eeeeecc----Cc---CeeEEEEeeCCCEEe
Q 024868 232 STWNK--IGHKRLL----RK---PASVLSISLDGKYLA 260 (261)
Q Consensus 232 ~~~~~--~~~~~~~----~~---~v~~~~~s~dg~~la 260 (261)
.+++. +..+... .. ....++|+|||++|+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 288 (331)
T 3u4y_A 251 LSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLF 288 (331)
T ss_dssp TTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEE
T ss_pred CCCceeeecccccccccCCCCcccccceEECCCCCEEE
Confidence 99876 3322211 22 224589999999875
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=1.6e-25 Score=191.08 Aligned_cols=231 Identities=12% Similarity=0.081 Sum_probs=163.5
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCC---CceEEEECCCCCeEEEE
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG---DPMTIAVNPSGDDFVCS 81 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~ 81 (261)
..+.+++|+|+. .+++. +.++ .++.||..+++. ...+..|.. .|.+++|||||++|+++
T Consensus 17 ~~~~~~~~spdg---~~~~~-~~dg--------~i~~~d~~~g~~------~~~~~~~~~~~~~v~~~~~SpDg~~l~~~ 78 (723)
T 1xfd_A 17 IHDPEAKWISDT---EFIYR-EQKG--------TVRLWNVETNTS------TVLIEGKKIESLRAIRYEISPDREYALFS 78 (723)
T ss_dssp CCCCCCCBSSSS---CBCCC-CSSS--------CEEEBCGGGCCC------EEEECTTTTTTTTCSEEEECTTSSEEEEE
T ss_pred ccccccEEcCCC---cEEEE-eCCC--------CEEEEECCCCcE------EEEeccccccccccceEEECCCCCEEEEE
Confidence 456788999974 34444 5666 788999877664 445555554 49999999999999998
Q ss_pred ecC---------CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccc
Q 024868 82 TTN---------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK 152 (261)
Q Consensus 82 ~~d---------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 152 (261)
+.+ +.+++||+.++.. .. + .....+...+..++|||||+.|++++. +.|++||+.+++.......
T Consensus 79 ~~~~~~~~~~~~~~i~~~d~~~~~~-~~-l---~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 79 YNVEPIYQHSYTGYYVLSKIPHGDP-QS-L---DPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp ESCCCCSSSCCCSEEEEEESSSCCC-EE-C---CCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred ecCccceeecceeeEEEEECCCCce-Ee-c---cCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecC
Confidence 764 6788999988763 11 1 111122345788999999999999864 7999999988776544443
Q ss_pred cCCce------------------eEEEEcCCCCEEEEecCCC----------------------------------cEEE
Q 024868 153 AHKSV------------------LDMDFSLDSEFLATTSTDG----------------------------------SARI 180 (261)
Q Consensus 153 ~~~~v------------------~~~~~s~~~~~l~~~~~d~----------------------------------~i~i 180 (261)
+...+ .+++|||||++|++++.|+ .|++
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~ 232 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHV 232 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEE
Confidence 33322 7899999999999887543 7999
Q ss_pred EEccCCcEEEEEeecC-----CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec-cCcCe----eEE
Q 024868 181 WKTEDGVAWTFLTRNS-----DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-LRKPA----SVL 250 (261)
Q Consensus 181 wd~~~~~~~~~~~~~~-----~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~v----~~~ 250 (261)
||+.+++....+..+. ...+..++|+|||+++ +.....+..+..|++||+.+++....... +...+ ..+
T Consensus 233 ~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 311 (723)
T 1xfd_A 233 IGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVA-VTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEP 311 (723)
T ss_dssp EESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEE-EEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCC
T ss_pred EECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEE-EEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCc
Confidence 9999888655565431 3358899999999962 11112223557899999999886654433 23333 378
Q ss_pred EEeeCCCEEe
Q 024868 251 SISLDGKYLA 260 (261)
Q Consensus 251 ~~s~dg~~la 260 (261)
+|||||+.|+
T Consensus 312 ~~spdg~~l~ 321 (723)
T 1xfd_A 312 VFSKDGRKFF 321 (723)
T ss_dssp EECTTSCSEE
T ss_pred eEcCCCCeEE
Confidence 9999999776
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=2.2e-24 Score=164.26 Aligned_cols=203 Identities=12% Similarity=0.031 Sum_probs=145.6
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeC-CccccceeeeeCCCCCCCCCeE
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQK 116 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~v~ 116 (261)
.|+.||..++.. ..+..|...+.+++|+|++++|++++ ++.|++||+.+ +.... .....+...+.
T Consensus 23 ~i~~~d~~~~~~-------~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~------~~~~~~~~~~~ 88 (297)
T 2ojh_A 23 SIEIFNIRTRKM-------RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEK------VDTGFATICNN 88 (297)
T ss_dssp EEEEEETTTTEE-------EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEE------CCCTTCCCBCS
T ss_pred eEEEEeCCCCce-------eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceE------ecccccccccc
Confidence 888999887763 23455788999999999999999876 78899999988 65311 11111235678
Q ss_pred EEEEeeCCcEEEEec--cCCe--EEEEEccCceEEeeccccCCceeEEEEcCCCCEEE-EecCCCcEEEEEccC-CcEEE
Q 024868 117 CLSFSVDGSRFAAGG--VDGH--LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTED-GVAWT 190 (261)
Q Consensus 117 ~~~~s~~~~~l~~~~--~d~~--i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~i~iwd~~~-~~~~~ 190 (261)
+++|+|++++|++++ .++. |..++..+++. .. ......+..++|+|++++|+ +++.++.++||+++. +....
T Consensus 89 ~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~ 166 (297)
T 2ojh_A 89 DHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RL-MTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET 166 (297)
T ss_dssp CCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EE-CCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred ceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EE-eecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcce
Confidence 899999999999987 3344 44555444443 22 33344588999999999887 677889899998642 23334
Q ss_pred EEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC-CCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 191 ~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
.+..+. ..+.+++|+|+|+++ ++++..++.+++|++. .+..+..+..+...+..++|+|||++|++
T Consensus 167 ~~~~~~-~~~~~~~~s~dg~~l----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 233 (297)
T 2ojh_A 167 RLTHGE-GRNDGPDYSPDGRWI----YFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVF 233 (297)
T ss_dssp ECCCSS-SCEEEEEECTTSSEE----EEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEE
T ss_pred EcccCC-CccccceECCCCCEE----EEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEE
Confidence 444443 358999999999973 2445567788888875 44455556667778899999999998873
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=4.7e-24 Score=181.57 Aligned_cols=230 Identities=13% Similarity=0.066 Sum_probs=162.5
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
.+|.+++|+|+ ..++++. ++ .++.||..++.. ..+..+...+.+++|+|||++|+++ .+
T Consensus 82 ~~v~~~~~spd---~~~~~~~--~~--------~i~~~d~~~~~~-------~~l~~~~~~~~~~~~SpdG~~la~~-~~ 140 (706)
T 2z3z_A 82 FPSFRTLDAGR---GLVVLFT--QG--------GLVGFDMLARKV-------TYLFDTNEETASLDFSPVGDRVAYV-RN 140 (706)
T ss_dssp CCCEEEEETTT---TEEEEEE--TT--------EEEEEETTTTEE-------EEEECCTTCCTTCEECTTSSEEEEE-ET
T ss_pred cCceeEEECCC---CeEEEEE--CC--------EEEEEECCCCce-------EEccCCcccccCCcCCCCCCEEEEE-EC
Confidence 56999999985 3344443 35 899999887653 2344566778999999999999985 68
Q ss_pred CcEEEEEEeC-----CccccceeeeeCCC-------CCCCCCeEEEEEeeCCcEEEEec---------------------
Q 024868 85 GGCKLFEVYG-----GATDINLLAKKMPP-------LQDAGPQKCLSFSVDGSRFAAGG--------------------- 131 (261)
Q Consensus 85 g~i~i~~~~~-----~~~~~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~--------------------- 131 (261)
+.|++|++.+ ++............ -.+...+.++.|||||++|++++
T Consensus 141 ~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~ 220 (706)
T 2z3z_A 141 HNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAES 220 (706)
T ss_dssp TEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEE
T ss_pred CeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCce
Confidence 9999999987 54311100000000 00012257899999999999986
Q ss_pred ------------cCCeEEEEEccCceEEeecc--ccCCceeEEEEcCCCCEEEEecCCC-----cEEEEEccCCcEEEEE
Q 024868 132 ------------VDGHLRIMHWPSLRIILDEP--KAHKSVLDMDFSLDSEFLATTSTDG-----SARIWKTEDGVAWTFL 192 (261)
Q Consensus 132 ------------~d~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~ 192 (261)
.+..|++||+.+++...... .+...+.+++|+|||++|++++.++ .|++||+.+++....+
T Consensus 221 ~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~ 300 (706)
T 2z3z_A 221 KPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTL 300 (706)
T ss_dssp EEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEE
T ss_pred EEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEE
Confidence 34679999998887644332 2345789999999999999877665 8999999998443333
Q ss_pred e-ecCCC---ceEEEEEec--CCCcceEEEEEeeCCCcEEEEEECC-CCeEEeeeeccCcCeeE-EEEeeCCCEEe
Q 024868 193 T-RNSDE---KIELCRFSK--DGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRKPASV-LSISLDGKYLA 260 (261)
Q Consensus 193 ~-~~~~~---~v~~~~~~p--~~~~~~~~~~~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~v~~-~~~s~dg~~la 260 (261)
. ..... .+..++|+| ||++ ++++..++.+++|++. +++.+..+..+...+.. ++|+|||+.|+
T Consensus 301 ~~~~~~~~~~~~~~~~~sp~~dg~~-----l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~ 371 (706)
T 2z3z_A 301 FVETDKHYVEPLHPLTFLPGSNNQF-----IWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLY 371 (706)
T ss_dssp EEEECSSCCCCCSCCEECTTCSSEE-----EEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEE
T ss_pred EEccCCCeECccCCceeecCCCCEE-----EEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEE
Confidence 2 22221 246789999 9986 5677788888888875 56666666666667776 89999999875
No 138
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.92 E-value=2e-22 Score=157.48 Aligned_cols=237 Identities=11% Similarity=0.059 Sum_probs=154.0
Q ss_pred eeeEEEEEeeCCcceEEEEecC--CCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-
Q 024868 6 TVTCGSWIKRPENVNLVVLGKS--SRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST- 82 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 82 (261)
.+..++|+|+. . +++++.. ++ .|+.|+..++.. .....+..+...+..++|+|+|++|++++
T Consensus 41 ~p~~~a~spdg--~-l~~~~~~~~~~--------~v~~~~~~~g~~----~~~~~~~~~~~~p~~~a~spdg~~l~~~~~ 105 (347)
T 3hfq_A 41 NPTYLALSAKD--C-LYSVDKEDDEG--------GIAAWQIDGQTA----HKLNTVVAPGTPPAYVAVDEARQLVYSANY 105 (347)
T ss_dssp CCCCEEECTTC--E-EEEEEEETTEE--------EEEEEEEETTEE----EEEEEEEEESCCCSEEEEETTTTEEEEEET
T ss_pred CcceEEEccCC--e-EEEEEecCCCc--------eEEEEEecCCcE----EEeeeeecCCCCCEEEEECCCCCEEEEEeC
Confidence 34557777752 3 4444432 34 677777755543 11223344567889999999999988887
Q ss_pred cCCcEEEEEEeCCccccceeeeeCCC-----CCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEcc-CceEEe--eccc-c
Q 024868 83 TNGGCKLFEVYGGATDINLLAKKMPP-----LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP-SLRIIL--DEPK-A 153 (261)
Q Consensus 83 ~dg~i~i~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~-~~~~~~--~~~~-~ 153 (261)
.++.+.+|++................ ......+.+++|+|+|+++++...++.|++|++. +++... .... .
T Consensus 106 ~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 185 (347)
T 3hfq_A 106 HKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEA 185 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCT
T ss_pred CCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCC
Confidence 67899999996432211111100000 0112358899999999966666678899999998 443321 1112 2
Q ss_pred CCceeEEEEcCCCCEEEE-ecCCCcEEEEEccC--CcEE--EEEeecCC-----CceEEEEEecCCCcceEEEEEeeCCC
Q 024868 154 HKSVLDMDFSLDSEFLAT-TSTDGSARIWKTED--GVAW--TFLTRNSD-----EKIELCRFSKDGTKPFLFCTVQRGDK 223 (261)
Q Consensus 154 ~~~v~~~~~s~~~~~l~~-~~~d~~i~iwd~~~--~~~~--~~~~~~~~-----~~v~~~~~~p~~~~~~~~~~~~~~~d 223 (261)
...+..++|+|||+++++ ...++.+.+|++.. ++.. ..+..... ..+..++|+|||+++| ++...+
T Consensus 186 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~----v~~~~~ 261 (347)
T 3hfq_A 186 GFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLY----VSNRGY 261 (347)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEE----EEEETT
T ss_pred CCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEE----EEeCCC
Confidence 235788999999996665 56688999999884 5432 22222111 2488899999999732 455567
Q ss_pred cEEEEEECCC---CeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 224 ALLAVYDIST---WNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 224 ~~i~~~d~~~---~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+.|.+||+.. .+.+.....+...+..++|+|||++|++
T Consensus 262 ~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v 302 (347)
T 3hfq_A 262 NTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVV 302 (347)
T ss_dssp TEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEE
T ss_pred CEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEE
Confidence 8999999973 2444445555567889999999998763
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=2.4e-22 Score=157.17 Aligned_cols=239 Identities=12% Similarity=0.064 Sum_probs=165.9
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE-ec
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TT 83 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~ 83 (261)
..++.++|+|+. ..+ +++..++.. ....-.++.||..+.+. ...+.. ...+..++|+|+|++++++ ..
T Consensus 41 ~~~~~~~~s~dg--~~l-~~~~~~~~~-~~~~~~v~~~d~~~~~~------~~~~~~-~~~~~~~~~s~dg~~l~v~~~~ 109 (353)
T 3vgz_A 41 KGAYEMAYSQQE--NAL-WLATSQSRK-LDKGGVVYRLDPVTLEV------TQAIHN-DLKPFGATINNTTQTLWFGNTV 109 (353)
T ss_dssp SSEEEEEEETTT--TEE-EEEECCCTT-TEESEEEEEECTTTCCE------EEEEEE-SSCCCSEEEETTTTEEEEEETT
T ss_pred cCccceEECCCC--CEE-EEEcCCCcC-CCCCccEEEEcCCCCeE------EEEEec-CCCcceEEECCCCCEEEEEecC
Confidence 346778888853 333 433322100 00011799999987764 222322 3457889999999966555 44
Q ss_pred CCcEEEEEEeCCccccceeeeeCCC--CCCCCCeEEEEEeeCCcEEEEec--cCCeEEEEEccCceEEeeccccCCceeE
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPP--LQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSLRIILDEPKAHKSVLD 159 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~v~~ 159 (261)
++.|.+||..+++............ ......+.+++|+|+++++++++ .++.|.+||..+++....+......+..
T Consensus 110 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 189 (353)
T 3vgz_A 110 NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTG 189 (353)
T ss_dssp TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCC
T ss_pred CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccce
Confidence 7899999998876422221100000 00011268899999999877775 4788999999998887665534556889
Q ss_pred EEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeec---CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868 160 MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (261)
Q Consensus 160 ~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~ 236 (261)
++|+|+|+++++++.++.+.+||+.+++.+..+... ....+..++|+|+|+++ .++...++.|.+||+.+++.
T Consensus 190 ~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l----~~~~~~~~~v~~~d~~~~~~ 265 (353)
T 3vgz_A 190 LALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRA----FITDSKAAEVLVVDTRNGNI 265 (353)
T ss_dssp CEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEE----EEEESSSSEEEEEETTTCCE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEE----EEEeCCCCEEEEEECCCCcE
Confidence 999999999999999999999999999988877642 12247789999999974 24456678999999999988
Q ss_pred EeeeeccCcCeeEEEEeeCCCEEe
Q 024868 237 IGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 237 ~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
+..+.... ...++|+|||++|+
T Consensus 266 ~~~~~~~~--~~~~~~s~dg~~l~ 287 (353)
T 3vgz_A 266 LAKVAAPE--SLAVLFNPARNEAY 287 (353)
T ss_dssp EEEEECSS--CCCEEEETTTTEEE
T ss_pred EEEEEcCC--CceEEECCCCCEEE
Confidence 76665433 36799999999664
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=1.5e-22 Score=157.17 Aligned_cols=216 Identities=10% Similarity=0.039 Sum_probs=154.8
Q ss_pred cceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec-CCcEEEEEEeCCc
Q 024868 18 NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGA 96 (261)
Q Consensus 18 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~~ 96 (261)
...+++++..++ .|..||..++++ ...+..+...+ .++|+|+++++++++. ++.|++||..++.
T Consensus 9 ~~~~~v~~~~~~--------~v~~~d~~~~~~------~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~ 73 (331)
T 3u4y_A 9 SNFGIVVEQHLR--------RISFFSTDTLEI------LNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEP 73 (331)
T ss_dssp CCEEEEEEGGGT--------EEEEEETTTCCE------EEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSS
T ss_pred CCEEEEEecCCC--------eEEEEeCcccce------eeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 356677887888 899999988765 33344455566 9999999997776665 7899999998776
Q ss_pred cccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC---eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEe-
Q 024868 97 TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG---HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT- 172 (261)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~- 172 (261)
....... .+..+..+++|+|+|++++++..++ .|.+||+.+++.+..+. ......+++|+|+|++++++
T Consensus 74 ~~~~~~~------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~ 146 (331)
T 3u4y_A 74 PKVVAIQ------EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP-IPYDAVGIAISPNGNGLILID 146 (331)
T ss_dssp CEEEEEE------ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE-CCTTEEEEEECTTSSCEEEEE
T ss_pred eeEEecc------cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE-CCCCccceEECCCCCEEEEEe
Confidence 4111111 1223344499999999998665553 89999999888765543 34457899999999866554
Q ss_pred cCCCc-EEEEEccCCcEEEEE---eecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE---EeeeeccCc
Q 024868 173 STDGS-ARIWKTEDGVAWTFL---TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---IGHKRLLRK 245 (261)
Q Consensus 173 ~~d~~-i~iwd~~~~~~~~~~---~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~---~~~~~~~~~ 245 (261)
..++. +.+|++.....+... .......+..++|+|+|+++ +++...++.|++||+.+++. +..+. ...
T Consensus 147 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l----~v~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~ 221 (331)
T 3u4y_A 147 RSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFA----FVANLIGNSIGILETQNPENITLLNAVG-TNN 221 (331)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEE----EEEETTTTEEEEEECSSTTSCEEEEEEE-CSS
T ss_pred cCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEE----EEEeCCCCeEEEEECCCCcccceeeecc-CCC
Confidence 45578 999998754332111 11223358899999999973 35666789999999998887 65554 346
Q ss_pred CeeEEEEeeCCCEEe
Q 024868 246 PASVLSISLDGKYLA 260 (261)
Q Consensus 246 ~v~~~~~s~dg~~la 260 (261)
.+..++|+|||++|+
T Consensus 222 ~~~~~~~spdg~~l~ 236 (331)
T 3u4y_A 222 LPGTIVVSRDGSTVY 236 (331)
T ss_dssp CCCCEEECTTSSEEE
T ss_pred CCceEEECCCCCEEE
Confidence 678999999999765
No 141
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.92 E-value=3.5e-24 Score=172.08 Aligned_cols=168 Identities=10% Similarity=-0.025 Sum_probs=126.8
Q ss_pred CCCCceEEEECCCCCeEE----EEecCCcEEEEEEeCCcc----ccceeeeeCCCCCCCCCeEEEEEeeC-CcEEEEecc
Q 024868 62 SEGDPMTIAVNPSGDDFV----CSTTNGGCKLFEVYGGAT----DINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGV 132 (261)
Q Consensus 62 ~~~~v~~~~~~~~~~~l~----~~~~dg~i~i~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~ 132 (261)
+...|.+++|+|++++|+ +++.|+.|++||+.+... ..+.+........|...|.+++|+|+ +++|++++.
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence 567899999999999999 788899999999976410 00000011112235678999999997 889999999
Q ss_pred CCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC------CceEEEEEe
Q 024868 133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD------EKIELCRFS 206 (261)
Q Consensus 133 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------~~v~~~~~~ 206 (261)
||+|++||++++........|...|.+++|+|+|++|++++.|+.|++||.+ ++....+..+.. ..+.+++|+
T Consensus 171 Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~ 249 (434)
T 2oit_A 171 DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWI 249 (434)
T ss_dssp TSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred CCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEe
Confidence 9999999999887665556667789999999999999999999999999998 666665544321 258899999
Q ss_pred cCCCcceEEEEEeeCCC------cEEEEEECCCC
Q 024868 207 KDGTKPFLFCTVQRGDK------ALLAVYDISTW 234 (261)
Q Consensus 207 p~~~~~~~~~~~~~~~d------~~i~~~d~~~~ 234 (261)
+++.+ ++ +....+ ..+++||+++.
T Consensus 250 ~~~~~--l~--~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 250 GTYVF--AI--VYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp ETTEE--EE--EEEETTCCSSSCCEEEEEECCCT
T ss_pred cCceE--EE--EEccCCCccCCCCceEEEEeccC
Confidence 97765 21 222222 24999999864
No 142
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=7.1e-24 Score=181.39 Aligned_cols=228 Identities=11% Similarity=0.092 Sum_probs=162.4
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCC---ceecCCeEEeeecCCCCCceEEEECCCCCeEEEE
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTT---SVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 81 (261)
..|.+++|+|+ ...+++++. + .|+.||..++ .. ..+..|...+..++|+|||++|+++
T Consensus 109 ~~v~~~~~SpD---g~~l~~~~~-~--------~i~~~d~~~~~~~~~-------~~l~~~~~~~~~~~~SPDG~~la~~ 169 (741)
T 2ecf_A 109 TGIVDYQWSPD---AQRLLFPLG-G--------ELYLYDLKQEGKAAV-------RQLTHGEGFATDAKLSPKGGFVSFI 169 (741)
T ss_dssp EESCCCEECTT---SSEEEEEET-T--------EEEEEESSSCSTTSC-------CBCCCSSSCEEEEEECTTSSEEEEE
T ss_pred cCcceeEECCC---CCEEEEEeC-C--------cEEEEECCCCCcceE-------EEcccCCcccccccCCCCCCEEEEE
Confidence 45889999996 445665554 5 8999998776 42 2456677889999999999999988
Q ss_pred ecCCcEEEEEEeCCccccceeeeeCCCC----------CCCCCeEEEEEeeCCcEEEEeccCC-----------------
Q 024868 82 TTNGGCKLFEVYGGATDINLLAKKMPPL----------QDAGPQKCLSFSVDGSRFAAGGVDG----------------- 134 (261)
Q Consensus 82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~~~~l~~~~~d~----------------- 134 (261)
+ ++.|++||+.++....... ...... .....+..++|||||++|++++.|+
T Consensus 170 ~-~~~i~~~d~~~g~~~~~~~-~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~ 247 (741)
T 2ecf_A 170 R-GRNLWVIDLASGRQMQLTA-DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTD 247 (741)
T ss_dssp E-TTEEEEEETTTTEEEECCC-CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEE
T ss_pred e-CCcEEEEecCCCCEEEecc-CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCccc
Confidence 6 5689999998765311100 000000 0001247799999999999987665
Q ss_pred ----------------eEEEEEccC-ceEEeecc--ccCCceeEEEEcCCCCEEEEecC-----CCcEEEEEccCCcEEE
Q 024868 135 ----------------HLRIMHWPS-LRIILDEP--KAHKSVLDMDFSLDSEFLATTST-----DGSARIWKTEDGVAWT 190 (261)
Q Consensus 135 ----------------~i~~~d~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~-----d~~i~iwd~~~~~~~~ 190 (261)
.|++||+.+ ++...... .+...+..++| |||++|++++. +..|++||+.+++...
T Consensus 248 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~ 326 (741)
T 2ecf_A 248 VIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRV 326 (741)
T ss_dssp EEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEE
T ss_pred ceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEE
Confidence 788999988 76543332 24457899999 99999987653 5679999999998877
Q ss_pred EEeecCCC---ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC-CCeEEeeeeccCcCeeEE-EEeeCCCEEe
Q 024868 191 FLTRNSDE---KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRKPASVL-SISLDGKYLA 260 (261)
Q Consensus 191 ~~~~~~~~---~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~v~~~-~~s~dg~~la 260 (261)
.+..+... .+..++|+|||+. +++++.++.+++|.+. +++ ...+..+...+..+ .|+|||+.|+
T Consensus 327 ~~~~~~~~~~~~~~~~~~spdg~~-----~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~ 395 (741)
T 2ecf_A 327 LAHETSPTWVPLHNSLRFLDDGSI-----LWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAY 395 (741)
T ss_dssp EEEEECSSCCCCCSCCEECTTSCE-----EEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEE
T ss_pred EEEcCCCCcCCcCCceEECCCCeE-----EEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEE
Confidence 77655432 2468899999995 5677788876777654 344 55666667778787 5999999775
No 143
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=2.5e-23 Score=184.02 Aligned_cols=219 Identities=13% Similarity=0.071 Sum_probs=166.3
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecC-----------CCCCceEEEEC-C
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE-----------SEGDPMTIAVN-P 73 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~-~ 73 (261)
.+.+.+|+|+ ...++.+ .++ .++.|+.....+ . .+.. |...+.+++|+ |
T Consensus 246 ~~~~~~~SpD---G~~la~~-~~~--------~i~~~d~~~~~l------~-~l~~~~~~~~~~~~~~~~~v~~~~~S~p 306 (1045)
T 1k32_A 246 DYYPRHLNTD---GRRILFS-KGG--------SIYIFNPDTEKI------E-KIEIGDLESPEDRIISIPSKFAEDFSPL 306 (1045)
T ss_dssp SSCEEEEEES---SSCEEEE-ETT--------EEEEECTTTCCE------E-ECCCCCCCBCCSEEEECGGGGEEEEEEC
T ss_pred CcceeeEcCC---CCEEEEE-eCC--------EEEEecCCceEe------e-eeccCcccccccccccccccceeeecCC
Confidence 3567789886 3345555 356 889998844433 1 2222 34579999999 9
Q ss_pred CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCC-CeEEEEEeeCCcEEEEeccCCeEE-EEEccCceEEeecc
Q 024868 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAG-PQKCLSFSVDGSRFAAGGVDGHLR-IMHWPSLRIILDEP 151 (261)
Q Consensus 74 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d~~i~-~~d~~~~~~~~~~~ 151 (261)
||++|++++ ++.+++|+...+.. .....+.. .+..++|+ ||+.|++++.++.+. +||+..++.. .+.
T Consensus 307 dG~~la~~~-~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~ 375 (1045)
T 1k32_A 307 DGDLIAFVS-RGQAFIQDVSGTYV--------LKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFE 375 (1045)
T ss_dssp GGGCEEEEE-TTEEEEECTTSSBE--------EECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECC
T ss_pred CCCEEEEEE-cCEEEEEcCCCCce--------EEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-Eec
Confidence 999999887 78899999876542 11122344 78899999 999999988888888 9998877654 344
Q ss_pred ccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeC----------
Q 024868 152 KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG---------- 221 (261)
Q Consensus 152 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~---------- 221 (261)
.+...+..++|+|||++|++++.++.|++||+.+++.......+.. .+.+++|+|||+++ +.++
T Consensus 376 ~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~-~v~~~~~SpDG~~l-----a~~~~~~~~~~~~~ 449 (1045)
T 1k32_A 376 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA-MITDFTISDNSRFI-----AYGFPLKHGETDGY 449 (1045)
T ss_dssp CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS-CCCCEEECTTSCEE-----EEEEEECSSTTCSC
T ss_pred CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCC-CccceEECCCCCeE-----EEEecCccccccCC
Confidence 5556899999999999999999999999999999988777655544 58999999999983 3322
Q ss_pred CCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 222 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
.++.|++||+.+++ +..+..+...+..++|+|||++|++
T Consensus 450 ~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~ 488 (1045)
T 1k32_A 450 VMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYY 488 (1045)
T ss_dssp CEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEE
T ss_pred CCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEE
Confidence 24699999999887 4456667777889999999998863
No 144
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=2e-22 Score=156.89 Aligned_cols=218 Identities=12% Similarity=0.134 Sum_probs=148.1
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCC-CceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-CcEEEEEEe--C
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKT-TSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-GGCKLFEVY--G 94 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~~~~--~ 94 (261)
..++++++.++ .+..|+.+. +.. . ......+...+.+++|+|++++|++++.+ +.|.+|++. +
T Consensus 5 ~~l~~~~~~~~--------~v~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~ 71 (343)
T 1ri6_A 5 QTVYIASPESQ--------QIHVWNLNHEGAL----T-LTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD 71 (343)
T ss_dssp EEEEEEEGGGT--------EEEEEEECTTSCE----E-EEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred EEEEEeCCCCC--------eEEEEEECCCCcE----E-EeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC
Confidence 34555556677 677776642 221 1 12223466789999999999999888876 899999998 3
Q ss_pred CccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cCCeEEEEEcc---CceEEeeccccCCceeEEEEcCCCCEEE
Q 024868 95 GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWP---SLRIILDEPKAHKSVLDMDFSLDSEFLA 170 (261)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 170 (261)
+.. ... ..+.....+..++|+|+++++++++ .++.|.+||+. ..+.... ......+.+++|+|++++++
T Consensus 72 ~~~--~~~----~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~ 144 (343)
T 1ri6_A 72 GAL--TFA----AESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV-VEGLDGCHSANISPDNRTLW 144 (343)
T ss_dssp CCE--EEE----EEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE-ECCCTTBCCCEECTTSSEEE
T ss_pred Cce--eec----cccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccc-ccCCCCceEEEECCCCCEEE
Confidence 332 111 1111123678999999999887665 48899999994 3333332 33344688999999999888
Q ss_pred Eec-CCCcEEEEEccC-CcEEE----EEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC--CeE--Eeee
Q 024868 171 TTS-TDGSARIWKTED-GVAWT----FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST--WNK--IGHK 240 (261)
Q Consensus 171 ~~~-~d~~i~iwd~~~-~~~~~----~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~--~~~--~~~~ 240 (261)
+++ .++.|++||+.+ ++... ....+....+..++|+|+++++ ++++..++.|.+||+.. ++. ....
T Consensus 145 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l----~~~~~~~~~i~~~~~~~~~g~~~~~~~~ 220 (343)
T 1ri6_A 145 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA----YCVNELNSSVDVWELKDPHGNIECVQTL 220 (343)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE----EEEETTTTEEEEEESSCTTSCCEEEEEE
T ss_pred EecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEE----EEEeCCCCEEEEEEecCCCCcEEEEeec
Confidence 776 789999999987 65433 2333334458899999999973 35566789999999953 432 2222
Q ss_pred ecc------CcCeeEEEEeeCCCEEe
Q 024868 241 RLL------RKPASVLSISLDGKYLA 260 (261)
Q Consensus 241 ~~~------~~~v~~~~~s~dg~~la 260 (261)
... ...+..++|+|||++|+
T Consensus 221 ~~~~~~~~~~~~~~~i~~s~dg~~l~ 246 (343)
T 1ri6_A 221 DMMPENFSDTRWAADIHITPDGRHLY 246 (343)
T ss_dssp ECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred cccCccccccCCccceEECCCCCEEE
Confidence 211 12456899999999875
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=4.5e-22 Score=154.49 Aligned_cols=214 Identities=14% Similarity=0.118 Sum_probs=152.5
Q ss_pred eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeec-CCCC-CceEEEECCCCCeEEE-EecCCcEEEEEEeCCc
Q 024868 20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD-ESEG-DPMTIAVNPSGDDFVC-STTNGGCKLFEVYGGA 96 (261)
Q Consensus 20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~~~~~~~l~~-~~~dg~i~i~~~~~~~ 96 (261)
.++++++.++ .|+.||..+.+. ...+. ++.. .+..++|+|+++.+++ ...++.|.+||+.+++
T Consensus 2 ~~~v~~~~~~--------~v~~~d~~~~~~------~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~ 67 (337)
T 1pby_B 2 DYILAPARPD--------KLVVIDTEKMAV------DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE 67 (337)
T ss_dssp EEEEEEETTT--------EEEEEETTTTEE------EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC
T ss_pred cEEEEcCCCC--------eEEEEECCCCcE------EEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC
Confidence 3678888888 899999987664 22233 2211 4789999999987654 4557899999998776
Q ss_pred cccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec------------cCCeEEEEEccCceEEeeccccCCceeEEEEcC
Q 024868 97 TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG------------VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL 164 (261)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------------~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~ 164 (261)
......... ...+...+..++|+|+|++++++. .++.|.+||+.+++....+.. ...+.+++|+|
T Consensus 68 ~~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~ 144 (337)
T 1pby_B 68 TLGRIDLST--PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR 144 (337)
T ss_dssp EEEEEECCB--TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT
T ss_pred eEeeEEcCC--cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC
Confidence 422211000 000012466799999999988885 579999999988877654433 44678899999
Q ss_pred CCCEEEEecCCCcEEEEEccCCcEEEEEeecC------------------------------------------------
Q 024868 165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNS------------------------------------------------ 196 (261)
Q Consensus 165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------------------------------------------------ 196 (261)
+|++|+++ ++.|++||+.+++.+..+..+.
T Consensus 145 dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 222 (337)
T 1pby_B 145 DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL 222 (337)
T ss_dssp TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred CCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceE
Confidence 99988887 6889999998887765543221
Q ss_pred -----------------CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEE
Q 024868 197 -----------------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL 259 (261)
Q Consensus 197 -----------------~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 259 (261)
...+.+++|+|+|+++ +.+ ++.|++||+.+++.+..+.. ...+.+++|+|||++|
T Consensus 223 ~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l-----~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l 294 (337)
T 1pby_B 223 TMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA-----FGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTV 294 (337)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECTTSSEE-----EEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEE
T ss_pred EEeCCCCCceEeecCCCCCceeeEEECCCCCEE-----EEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCCCCEE
Confidence 0123468999999973 333 68999999999988765553 4567899999999987
Q ss_pred e
Q 024868 260 A 260 (261)
Q Consensus 260 a 260 (261)
+
T Consensus 295 ~ 295 (337)
T 1pby_B 295 W 295 (337)
T ss_dssp E
T ss_pred E
Confidence 6
No 146
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=2.5e-22 Score=165.49 Aligned_cols=197 Identities=11% Similarity=0.050 Sum_probs=149.7
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEE--eCCc
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEV--YGGA 96 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~--~~~~ 96 (261)
..+++++..++ .|..||..+.++ ...+..+.. +..++|+|||++|++++.|+.|++||+ .+.+
T Consensus 149 ~~~~vs~~~d~--------~V~v~D~~t~~~------~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~ 213 (543)
T 1nir_A 149 NLFSVTLRDAG--------QIALVDGDSKKI------VKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT 213 (543)
T ss_dssp GEEEEEEGGGT--------EEEEEETTTCCE------EEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE
T ss_pred CEEEEEEcCCC--------eEEEEECCCceE------EEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc
Confidence 56788888888 899999988765 334442222 889999999999999999999999999 5544
Q ss_pred cccceeeeeCCCCCCCCCeEEEEEee----CCcEEEEec-cCCeEEEEEccCceEEeeccc----------cCC-ceeEE
Q 024868 97 TDINLLAKKMPPLQDAGPQKCLSFSV----DGSRFAAGG-VDGHLRIMHWPSLRIILDEPK----------AHK-SVLDM 160 (261)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~----------~~~-~v~~~ 160 (261)
. ...+.....+..++|+| ||+++++++ .+++|.+||..+++.+..+.. |.. .+..+
T Consensus 214 ~--------~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i 285 (543)
T 1nir_A 214 K--------VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAI 285 (543)
T ss_dssp E--------EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEE
T ss_pred E--------EEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEE
Confidence 3 11222345679999999 999999987 489999999999887665543 223 68899
Q ss_pred EEcCCCC-EEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868 161 DFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (261)
Q Consensus 161 ~~s~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~ 239 (261)
.++|++. ++++...++.|.+||..+.+.+..........+.++.|+|+|+++ ++++..+++|.+||+.+++.+..
T Consensus 286 ~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l----~va~~~~~~v~v~D~~tg~l~~~ 361 (543)
T 1nir_A 286 IASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYF----MTAANNSNKVAVIDSKDRRLSAL 361 (543)
T ss_dssp EECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEE----EEEEGGGTEEEEEETTTTEEEEE
T ss_pred EECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEE----EEEecCCCeEEEEECCCCeEEEe
Confidence 9999766 456677889999999988765442111233458899999999973 35566788999999999998876
Q ss_pred eec
Q 024868 240 KRL 242 (261)
Q Consensus 240 ~~~ 242 (261)
+..
T Consensus 362 i~~ 364 (543)
T 1nir_A 362 VDV 364 (543)
T ss_dssp EEC
T ss_pred ecc
Confidence 664
No 147
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=2.6e-23 Score=177.40 Aligned_cols=243 Identities=11% Similarity=0.019 Sum_probs=157.1
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCC-CCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASS-SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
.|.+++|+|+ ...++++..+.... ....-.++.||..++.. ........|...+..++|||||++|++++.
T Consensus 62 ~v~~~~~SpD---g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~~~~SPdG~~la~~~~- 133 (723)
T 1xfd_A 62 RAIRYEISPD---REYALFSYNVEPIYQHSYTGYYVLSKIPHGDP----QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE- 133 (723)
T ss_dssp TCSEEEECTT---SSEEEEEESCCCCSSSCCCSEEEEEESSSCCC----EECCCTTCCSCCCSBCCBCSSTTCEEEEET-
T ss_pred ccceEEECCC---CCEEEEEecCccceeecceeeEEEEECCCCce----EeccCCccccccccccEECCCCCEEEEEEC-
Confidence 4889999996 45666665443110 00112788888877653 111122345556889999999999999875
Q ss_pred CcEEEEEEeCCccccceeeeeCCCC------------CCCCCeEEEEEeeCCcEEEEeccCC------------------
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPL------------QDAGPQKCLSFSVDGSRFAAGGVDG------------------ 134 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~------------~~~~~v~~~~~s~~~~~l~~~~~d~------------------ 134 (261)
+.|++|++.++.... +........ .-...+.+++|||||++|++++.++
T Consensus 134 ~~i~~~~~~~g~~~~-~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~ 212 (723)
T 1xfd_A 134 NNIYYCAHVGKQAIR-VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPT 212 (723)
T ss_dssp TEEEEESSSSSCCEE-EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCC
T ss_pred CeEEEEECCCCceEE-EecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCc
Confidence 789999998765421 110000000 0011347899999999999886542
Q ss_pred ----------------eEEEEEccCceEEeecccc------CCceeEEEEcCCCCEEEEecC----CCcEEEEEccCCcE
Q 024868 135 ----------------HLRIMHWPSLRIILDEPKA------HKSVLDMDFSLDSEFLATTST----DGSARIWKTEDGVA 188 (261)
Q Consensus 135 ----------------~i~~~d~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~----d~~i~iwd~~~~~~ 188 (261)
.|++||+.+++....+..+ ...+..++|+|||+++++.+. +..|++||+.+++.
T Consensus 213 ~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~ 292 (723)
T 1xfd_A 213 VKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC 292 (723)
T ss_dssp CEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE
T ss_pred ceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc
Confidence 7999999887743334332 346899999999998876643 35799999999988
Q ss_pred EEEEeecCCCce----EEEEEecCCCcceEEEEEeeCCCc------EEEEEE-CCCCeE--EeeeeccCcCeeE-EEEee
Q 024868 189 WTFLTRNSDEKI----ELCRFSKDGTKPFLFCTVQRGDKA------LLAVYD-ISTWNK--IGHKRLLRKPASV-LSISL 254 (261)
Q Consensus 189 ~~~~~~~~~~~v----~~~~~~p~~~~~~~~~~~~~~~d~------~i~~~d-~~~~~~--~~~~~~~~~~v~~-~~~s~ 254 (261)
...+..+....+ ..++|+|||+.++ ..++..++ .|++|| ..+++. ...+......+.. ++|+|
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~---~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp 369 (723)
T 1xfd_A 293 TKKHEDESEAWLHRQNEEPVFSKDGRKFF---FIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE 369 (723)
T ss_dssp EEEEEEECSSCCCCCCCCCEECTTSCSEE---EEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET
T ss_pred eEEEEeccCCEEeccCCCceEcCCCCeEE---EEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC
Confidence 776654433333 3789999999842 12244555 677888 444441 3334433344544 69999
Q ss_pred CCCEEe
Q 024868 255 DGKYLA 260 (261)
Q Consensus 255 dg~~la 260 (261)
||++|+
T Consensus 370 dg~~l~ 375 (723)
T 1xfd_A 370 KGNKIY 375 (723)
T ss_dssp TTTEEE
T ss_pred CCCEEE
Confidence 999886
No 148
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.91 E-value=1.1e-20 Score=148.40 Aligned_cols=239 Identities=13% Similarity=0.142 Sum_probs=151.0
Q ss_pred eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cCC
Q 024868 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNG 85 (261)
Q Consensus 7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg 85 (261)
+..++|+|+ ..++++++.++ ...+.+.+|.++..++.+ ........+...+..+++ ++++|++++ .++
T Consensus 52 p~~l~~spd---g~~l~~~~~~~--~~~~~v~~~~~~~~~g~~----~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~ 120 (361)
T 3scy_A 52 PSYLIPSAD---GKFVYSVNEFS--KDQAAVSAFAFDKEKGTL----HLLNTQKTMGADPCYLTT--NGKNIVTANYSGG 120 (361)
T ss_dssp CCSEEECTT---SSEEEEEECCS--STTCEEEEEEEETTTTEE----EEEEEEECSSSCEEEEEE--CSSEEEEEETTTT
T ss_pred CceEEECCC---CCEEEEEEccC--CCCCcEEEEEEeCCCCcE----EEeeEeccCCCCcEEEEE--CCCEEEEEECCCC
Confidence 445677775 34555554431 122345667777765553 112223334556778888 888887776 478
Q ss_pred cEEEEEEeCCccccceeeeeC-------CCCCCCCCeEEEEEeeCCcEEEEec-cCCeEEEEEccCceE-----------
Q 024868 86 GCKLFEVYGGATDINLLAKKM-------PPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRI----------- 146 (261)
Q Consensus 86 ~i~i~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~----------- 146 (261)
.+.+|++.............. ........+.+++|+|+|+++++++ .++.+.+|++.....
T Consensus 121 ~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~ 200 (361)
T 3scy_A 121 SITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG 200 (361)
T ss_dssp EEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred EEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence 999999975443211110000 0011123468899999999776654 578999998875431
Q ss_pred --EeeccccCCceeEEEEcCCCCEEEEec-CCCcEEEEEccCCcEE--EEEeec--CCCceEEEEEecCCCcceEEEEEe
Q 024868 147 --ILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAW--TFLTRN--SDEKIELCRFSKDGTKPFLFCTVQ 219 (261)
Q Consensus 147 --~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~~~--~~~~~~--~~~~v~~~~~~p~~~~~~~~~~~~ 219 (261)
..........+..++|+|||+++++++ .++.|.+||+.+++.. ..+... ....+..++|+|||+++ .++
T Consensus 201 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l----~v~ 276 (361)
T 3scy_A 201 TPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYL----YAS 276 (361)
T ss_dssp EEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEE----EEE
T ss_pred cccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEE----EEE
Confidence 112223344678999999999887766 6899999999977542 222211 11236799999999983 244
Q ss_pred eCC-CcEEEEEECC--CCe--EEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 220 RGD-KALLAVYDIS--TWN--KIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 220 ~~~-d~~i~~~d~~--~~~--~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
... ++.|.+|++. +++ .+..... ...+..++|+|||++|++
T Consensus 277 ~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~ 322 (361)
T 3scy_A 277 NRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLV 322 (361)
T ss_dssp ECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEE
T ss_pred CCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEE
Confidence 445 6899999995 444 3333333 557789999999998863
No 149
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=7.8e-23 Score=174.12 Aligned_cols=228 Identities=11% Similarity=0.078 Sum_probs=159.3
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCC-----CceecCCeEEeeecCCCC--------------
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKT-----TSVYTSPLVTYVFDESEG-------------- 64 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~-------------- 64 (261)
.+.+.+++|+|+ ...+++. .++ .|+.|+..+ +.. ......+..
T Consensus 120 ~~~~~~~~~Spd---G~~la~~-~~~--------~i~v~~~~~~~~~~g~~------~~~~~~~~~~~~~g~~~~~ee~~ 181 (706)
T 2z3z_A 120 NEETASLDFSPV---GDRVAYV-RNH--------NLYIARGGKLGEGMSRA------IAVTIDGTETLVYGQAVHQREFG 181 (706)
T ss_dssp TTCCTTCEECTT---SSEEEEE-ETT--------EEEEEECBCTTSCCCCC------EESCSCCBTTEEESSCCGGGCTT
T ss_pred cccccCCcCCCC---CCEEEEE-ECC--------eEEEEecCcccccCCCc------EEeccCCCCCeEcccchhhhhcC
Confidence 356778899986 3455554 455 788888876 442 222222222
Q ss_pred CceEEEECCCCCeEEEEe---------------------------------cCCcEEEEEEeCCccccceeeeeCCCCCC
Q 024868 65 DPMTIAVNPSGDDFVCST---------------------------------TNGGCKLFEVYGGATDINLLAKKMPPLQD 111 (261)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~---------------------------------~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 111 (261)
.+.+++|+|||++|++++ .+..|++||+.++..... .....+
T Consensus 182 ~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~-----~~~~~~ 256 (706)
T 2z3z_A 182 IEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYL-----QTGEPK 256 (706)
T ss_dssp CCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEEC-----CCCSCT
T ss_pred CCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEee-----ccCCCC
Confidence 258999999999999887 346799999987653111 111123
Q ss_pred CCCeEEEEEeeCCcEEEEeccCC-----eEEEEEccCceEEeecc-ccC-C---ceeEEEEcC--CCCEEEEecCCCcEE
Q 024868 112 AGPQKCLSFSVDGSRFAAGGVDG-----HLRIMHWPSLRIILDEP-KAH-K---SVLDMDFSL--DSEFLATTSTDGSAR 179 (261)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~-~~~-~---~v~~~~~s~--~~~~l~~~~~d~~i~ 179 (261)
...+..++|+|||++|++++.++ .|++||+.+++....+. ... . .+..++|+| ||+++++++.|+.++
T Consensus 257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~ 336 (706)
T 2z3z_A 257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNH 336 (706)
T ss_dssp TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCE
T ss_pred ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccE
Confidence 46789999999999999877665 89999999883322222 111 1 246789999 999999999999999
Q ss_pred EEEcc-CCcEEEEEeecCCCceEE-EEEecCCCcceEEEEEeeCCCc----EEEEEECCCCeEEeeeeccCcCeeEEEEe
Q 024868 180 IWKTE-DGVAWTFLTRNSDEKIEL-CRFSKDGTKPFLFCTVQRGDKA----LLAVYDISTWNKIGHKRLLRKPASVLSIS 253 (261)
Q Consensus 180 iwd~~-~~~~~~~~~~~~~~~v~~-~~~~p~~~~~~~~~~~~~~~d~----~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 253 (261)
||++. +++.+..+..+.. .+.. ++|+|+|+.+ ++++..++ .|+.||+.+++.. .+. +...+.+++||
T Consensus 337 l~~~~~~~~~~~~l~~~~~-~v~~~~~~spdg~~l----~~~~~~~~~~~~~l~~~d~~~~~~~-~l~-~~~~~~~~~~s 409 (706)
T 2z3z_A 337 LYLYDTTGRLIRQVTKGEW-EVTNFAGFDPKGTRL----YFESTEASPLERHFYCIDIKGGKTK-DLT-PESGMHRTQLS 409 (706)
T ss_dssp EEEEETTSCEEEECCCSSS-CEEEEEEECTTSSEE----EEEESSSCTTCBEEEEEETTCCCCE-ESC-CSSSEEEEEEC
T ss_pred EEEEECCCCEEEecCCCCe-EEEeeeEEcCCCCEE----EEEecCCCCceEEEEEEEcCCCCce-ecc-CCCceEEEEEC
Confidence 99887 6777777765543 4666 7999999974 24444444 7888888876632 233 55678999999
Q ss_pred eCCCEEeC
Q 024868 254 LDGKYLAM 261 (261)
Q Consensus 254 ~dg~~la~ 261 (261)
|||++|++
T Consensus 410 pdg~~l~~ 417 (706)
T 2z3z_A 410 PDGSAIID 417 (706)
T ss_dssp TTSSEEEE
T ss_pred CCCCEEEE
Confidence 99998863
No 150
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=5e-22 Score=163.72 Aligned_cols=233 Identities=6% Similarity=0.008 Sum_probs=166.9
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcC--CCCceecCCeEEeeecCCCCCceEEEECC----CCCeEE
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDP--KTTSVYTSPLVTYVFDESEGDPMTIAVNP----SGDDFV 79 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~ 79 (261)
.+.+++|+|+ ..++++++.++ .|..||. .+... ...+. +...+..++|+| ||++++
T Consensus 180 ~~~~v~~spd---g~~l~v~~~d~--------~V~v~D~~~~t~~~------~~~i~-~g~~p~~va~sp~~~~dg~~l~ 241 (543)
T 1nir_A 180 AVHISRMSAS---GRYLLVIGRDA--------RIDMIDLWAKEPTK------VAEIK-IGIEARSVESSKFKGYEDRYTI 241 (543)
T ss_dssp TEEEEEECTT---SCEEEEEETTS--------EEEEEETTSSSCEE------EEEEE-CCSEEEEEEECCSTTCTTTEEE
T ss_pred ccceEEECCC---CCEEEEECCCC--------eEEEEECcCCCCcE------EEEEe-cCCCcceEEeCCCcCCCCCEEE
Confidence 3788899885 55677777777 8888998 55443 33444 345689999999 999999
Q ss_pred EEec-CCcEEEEEEeCCccccceeeeeC----CCCCCCCCeEEEEEeeCCc-EEEEeccCCeEEEEEccCceEEe-eccc
Q 024868 80 CSTT-NGGCKLFEVYGGATDINLLAKKM----PPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPSLRIIL-DEPK 152 (261)
Q Consensus 80 ~~~~-dg~i~i~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~~~~~-~~~~ 152 (261)
+++. +++|.+||..+.+....+..... ..+.....+..+.++|++. ++++...++.|.+||+.+.+.+. ....
T Consensus 242 v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~ 321 (543)
T 1nir_A 242 AGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG 321 (543)
T ss_dssp EEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE
T ss_pred EEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec
Confidence 8875 79999999887765332211000 0011234789999999765 45566688999999998755322 1223
Q ss_pred cCCceeEEEEcCCCCEEEEe-cCCCcEEEEEccCCcEEEEEeec---CCCceEEEEEecCCCcceEEEEEeeC-CCcEEE
Q 024868 153 AHKSVLDMDFSLDSEFLATT-STDGSARIWKTEDGVAWTFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRG-DKALLA 227 (261)
Q Consensus 153 ~~~~v~~~~~s~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~p~~~~~~~~~~~~~~-~d~~i~ 227 (261)
+...+.++.|+|+|++++++ ..++.|.+||..+++++..+... +......+ ++|++..+ .+++. .|++|.
T Consensus 322 ~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~----~~s~~~~d~~V~ 396 (543)
T 1nir_A 322 AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPV----WSTSHLGDGSIS 396 (543)
T ss_dssp CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEE----EEEEBSSSSEEE
T ss_pred cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccE----EEeccCCCceEE
Confidence 44568899999999987655 46899999999999998887742 11112222 57885542 35543 678999
Q ss_pred EEECCC-------CeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 228 VYDIST-------WNKIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 228 ~~d~~~-------~~~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
+||+.+ ++.+.++..+...+..++++|||++|++
T Consensus 397 v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v 437 (543)
T 1nir_A 397 LIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYV 437 (543)
T ss_dssp EEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEE
T ss_pred EEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEE
Confidence 999998 8888888888888899999999999864
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=2.9e-21 Score=150.96 Aligned_cols=212 Identities=13% Similarity=0.142 Sum_probs=143.3
Q ss_pred CCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec---CCcEEEEEEeCCccccceeeeeCCCCC
Q 024868 34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT---NGGCKLFEVYGGATDINLLAKKMPPLQ 110 (261)
Q Consensus 34 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~~ 110 (261)
...+.+|.+|..++.+. ......+...+..++|+|+|+ |++++. ++.|++|++.++.... +.. ...
T Consensus 15 ~~~i~v~~~d~~tg~~~-----~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~--~~~---~~~ 83 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLT-----NDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHK--LNT---VVA 83 (347)
T ss_dssp CCEEEEEEEETTTTEEE-----EEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEE--EEE---EEE
T ss_pred CCCEEEEEEcCCCCeEE-----EeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEE--eee---eec
Confidence 34578999998777641 112233456788899999999 655554 5899999997665311 111 011
Q ss_pred CCCCeEEEEEeeCCcEEEEec-cCCeEEEEEccC-c--eEEeeccc---------cCCceeEEEEcCCCCEEEEecCCCc
Q 024868 111 DAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPS-L--RIILDEPK---------AHKSVLDMDFSLDSEFLATTSTDGS 177 (261)
Q Consensus 111 ~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~-~--~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~d~~ 177 (261)
+...+..++|+|||++|++++ .++.+.+|++.. + ..+..... ....+.+++|+|+|+++++...++.
T Consensus 84 ~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~ 163 (347)
T 3hfq_A 84 PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDK 163 (347)
T ss_dssp ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTE
T ss_pred CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCE
Confidence 245678899999999888887 789999999963 2 22222211 1124788999999996667777889
Q ss_pred EEEEEcc-CCcEEE--EEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC--CeEE--eeeeccC------
Q 024868 178 ARIWKTE-DGVAWT--FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST--WNKI--GHKRLLR------ 244 (261)
Q Consensus 178 i~iwd~~-~~~~~~--~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~--~~~~--~~~~~~~------ 244 (261)
|++||+. +++... .+.......+..++|+|||+++ +++...++.+.+|++.. ++.. .......
T Consensus 164 v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l----~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~ 239 (347)
T 3hfq_A 164 VYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYA----FLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAH 239 (347)
T ss_dssp EEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEE----EEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSC
T ss_pred EEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEE----EEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCC
Confidence 9999998 555432 2233333357889999999973 35567788999999874 5432 2222222
Q ss_pred cCeeEEEEeeCCCEEe
Q 024868 245 KPASVLSISLDGKYLA 260 (261)
Q Consensus 245 ~~v~~~~~s~dg~~la 260 (261)
..+..++|+|||++|+
T Consensus 240 ~~~~~i~~spdG~~l~ 255 (347)
T 3hfq_A 240 NGAAAIRLSHDGHFLY 255 (347)
T ss_dssp CEEEEEEECTTSCEEE
T ss_pred CcceeEEECCCCCEEE
Confidence 3478899999999874
No 152
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=1.5e-22 Score=168.83 Aligned_cols=219 Identities=10% Similarity=-0.003 Sum_probs=150.4
Q ss_pred CceeeEEEEEeeCCcceEEEEecC-CCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCC-CCceEEEECCCCCeEEEE
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKS-SRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAVNPSGDDFVCS 81 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~ 81 (261)
..||++++|+|+ ...+|.++. ++ .+..|+.+++. ...+..|. ..+..++|+|| +.++++
T Consensus 21 ~~~~~~~~~~~D---G~~la~~s~~~g--------~~~lw~~~~g~-------~~~lt~~~~~~~~~~~~spd-~~l~~~ 81 (582)
T 3o4h_A 21 AVEKYSLQGVVD---GDKLLVVGFSEG--------SVNAYLYDGGE-------TVKLNREPINSVLDPHYGVG-RVILVR 81 (582)
T ss_dssp HSCEEEEEEEET---TTEEEEEEEETT--------EEEEEEEETTE-------EEECCSSCCSEECEECTTCS-EEEEEE
T ss_pred ccchheeecCCC---CCeEEEEEccCC--------ceeEEEEcCCC-------cEeeecccccccccccCCCC-eEEEEe
Confidence 358999999997 446676554 66 44444444444 22344454 68999999999 666666
Q ss_pred ec---CCcEEEEEEeC--CccccceeeeeCCCCCCCCCeEEEEEeeCCcE-EEEeccCCeEEEEEccCceEEeeccccCC
Q 024868 82 TT---NGGCKLFEVYG--GATDINLLAKKMPPLQDAGPQKCLSFSVDGSR-FAAGGVDGHLRIMHWPSLRIILDEPKAHK 155 (261)
Q Consensus 82 ~~---dg~i~i~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 155 (261)
+. +....+|.+.. ..... .+.........+|+|||+. +++.+.++.+.+||+.+++.... ..+..
T Consensus 82 ~~~~g~~~~~l~~~~~~~~g~~~--------~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l-~~~~~ 152 (582)
T 3o4h_A 82 DVSKGAEQHALFKVNTSRPGEEQ--------RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLREL-ARLPG 152 (582)
T ss_dssp ECSTTSCCEEEEEEETTSTTCCE--------ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEE-EEESS
T ss_pred ccCCCCcceEEEEEeccCCCccc--------cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEe-ecCCC
Confidence 54 45577877765 32211 1112234556789998864 33333445566999988876433 33333
Q ss_pred ceeEEEEcCCCCEEEEecCC----CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCc--EEEEE
Q 024868 156 SVLDMDFSLDSEFLATTSTD----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVY 229 (261)
Q Consensus 156 ~v~~~~~s~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~--~i~~~ 229 (261)
.+++|||||++|++++.+ ..|++||+.+++.. .+..+.. .+..++|||||+. ++++..++ .|++|
T Consensus 153 --~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-~~~~~~~SpDG~~-----l~~~~~~~~~~i~~~ 223 (582)
T 3o4h_A 153 --FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEG-SFSSASISPGMKV-----TAGLETAREARLVTV 223 (582)
T ss_dssp --CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSC-EEEEEEECTTSCE-----EEEEECSSCEEEEEE
T ss_pred --ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCC-ccccceECCCCCE-----EEEccCCCeeEEEEE
Confidence 889999999999987776 77999999988865 4554444 5899999999998 45666677 89999
Q ss_pred ECCCCeEEeeeeccCcCeeEEE--------EeeCCCEEe
Q 024868 230 DISTWNKIGHKRLLRKPASVLS--------ISLDGKYLA 260 (261)
Q Consensus 230 d~~~~~~~~~~~~~~~~v~~~~--------~s~dg~~la 260 (261)
|+.+++.. .+..+...+..++ |+|||+.++
T Consensus 224 d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~ 261 (582)
T 3o4h_A 224 DPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAV 261 (582)
T ss_dssp CTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEE
T ss_pred cCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEE
Confidence 99998876 5666666666677 999996654
No 153
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=1.3e-21 Score=151.88 Aligned_cols=206 Identities=15% Similarity=0.093 Sum_probs=149.8
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecC---CCCCceEEEECCCCCeEEEEe
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE---SEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~ 82 (261)
.+.+++|+|+. ..+++++..++ .|+.||..+.+. ........ |...+..++|+|+|++|+++.
T Consensus 35 ~~~~~~~s~dg--~~l~v~~~~~~--------~v~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 100 (337)
T 1pby_B 35 TPMVPMVAPGG--RIAYATVNKSE--------SLVKIDLVTGET----LGRIDLSTPEERVKSLFGAALSPDGKTLAIYE 100 (337)
T ss_dssp CCCCEEECTTS--SEEEEEETTTT--------EEEEEETTTCCE----EEEEECCBTTEEEECTTCEEECTTSSEEEEEE
T ss_pred CccceEEcCCC--CEEEEEeCCCC--------eEEEEECCCCCe----EeeEEcCCcccccccccceEECCCCCEEEEEe
Confidence 46778898863 45666666677 899999877654 11112211 122577899999999998876
Q ss_pred ------------cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeec
Q 024868 83 ------------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE 150 (261)
Q Consensus 83 ------------~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 150 (261)
.++.|.+||+.+++.... +.....+.+++|+|++++++++ ++.|++||+.+++....+
T Consensus 101 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--------~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~ 170 (337)
T 1pby_B 101 SPVRLELTHFEVQPTRVALYDAETLSRRKA--------FEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDK 170 (337)
T ss_dssp EEEEECSSCEEECCCEEEEEETTTTEEEEE--------EECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEE
T ss_pred cccccccccccccCceEEEEECCCCcEEEE--------EeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeee
Confidence 578999999987653211 1123456778999999988887 678999999877654322
Q ss_pred cccC------------------------------------------------------------------CceeEEEEcC
Q 024868 151 PKAH------------------------------------------------------------------KSVLDMDFSL 164 (261)
Q Consensus 151 ~~~~------------------------------------------------------------------~~v~~~~~s~ 164 (261)
..+. ..+.+++|+|
T Consensus 171 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~ 250 (337)
T 1pby_B 171 PIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP 250 (337)
T ss_dssp CSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT
T ss_pred eccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECC
Confidence 2111 1234689999
Q ss_pred CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccC
Q 024868 165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244 (261)
Q Consensus 165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~ 244 (261)
+|++++++ ++.|++||+.+++.+..+..+ ..+.+++|+|+|++ ++.++.++.|++||+.+++.+..+....
T Consensus 251 dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~-----l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 251 AKTRAFGA--YNVLESFDLEKNASIKRVPLP--HSYYSVNVSTDGST-----VWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp TSSEEEEE--ESEEEEEETTTTEEEEEEECS--SCCCEEEECTTSCE-----EEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred CCCEEEEe--CCeEEEEECCCCcCcceecCC--CceeeEEECCCCCE-----EEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 99999888 799999999999988777643 24789999999997 3455778999999999999887766543
No 154
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.90 E-value=2.8e-22 Score=171.43 Aligned_cols=227 Identities=11% Similarity=0.100 Sum_probs=157.2
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCC-----ceEEEECCCCCeEE
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD-----PMTIAVNPSGDDFV 79 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~ 79 (261)
...+.++|+|+ ..+++.+ ++ .|+.||..++.. ...+..|... ...++|||||++|+
T Consensus 17 ~~~~~~~w~~d---g~~~~~~--~~--------~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~Spdg~~l~ 77 (740)
T 4a5s_A 17 LKLYSLRWISD---HEYLYKQ--EN--------NILVFNAEYGNS------SVFLENSTFDEFGHSINDYSISPDGQFIL 77 (740)
T ss_dssp CCCCCEEECSS---SEEEEEE--TT--------EEEEEETTTCCE------EEEECTTTTTTCCSCCCEEEECTTSSEEE
T ss_pred ccccccEECCC---CcEEEEc--CC--------cEEEEECCCCce------EEEEechhhhhhcccccceEECCCCCEEE
Confidence 35678999996 4567765 67 899999888764 3445665532 24588999999999
Q ss_pred EEecC---------CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeec
Q 024868 80 CSTTN---------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE 150 (261)
Q Consensus 80 ~~~~d---------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 150 (261)
.++.+ +.+++||+.+++. .....+...+..++|||||+.||.+ .++.|++|++.+++..+..
T Consensus 78 ~~~~~~~~~r~~~~~~~~~~d~~~~~~--------~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt 148 (740)
T 4a5s_A 78 LEYNYVKQWRHSYTASYDIYDLNKRQL--------ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRIT 148 (740)
T ss_dssp EEEEEEECSSSCEEEEEEEEETTTTEE--------CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECC
T ss_pred EEECCeeeEEEccceEEEEEECCCCcE--------EEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEc
Confidence 88775 5677999988764 2223345678999999999999998 6789999999887754332
Q ss_pred cccC-Cce-----------------eEEEEcCCCCEEEEecCCC------------------------------------
Q 024868 151 PKAH-KSV-----------------LDMDFSLDSEFLATTSTDG------------------------------------ 176 (261)
Q Consensus 151 ~~~~-~~v-----------------~~~~~s~~~~~l~~~~~d~------------------------------------ 176 (261)
.... ..+ ..+.|||||++|+..+.|.
T Consensus 149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~ 228 (740)
T 4a5s_A 149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTV 228 (740)
T ss_dssp SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEE
T ss_pred CCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCee
Confidence 2221 122 3589999999999875321
Q ss_pred cEEEEEccC---Cc--EEEEEee-----cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe----EE--eee
Q 024868 177 SARIWKTED---GV--AWTFLTR-----NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN----KI--GHK 240 (261)
Q Consensus 177 ~i~iwd~~~---~~--~~~~~~~-----~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~----~~--~~~ 240 (261)
.|++||+.+ ++ ....+.. .+...+..++|+|||+. +++.+...+.+..|++||+.+++ +. ..+
T Consensus 229 ~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~-~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l 307 (740)
T 4a5s_A 229 KFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERI-SLQWLRRIQNYSVMDICDYDESSGRWNCLVARQH 307 (740)
T ss_dssp EEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEE-EEEEEESSTTEEEEEEEEEETTTTEEEECGGGCE
T ss_pred EEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeE-EEEEeCCCCCEEEEEEEECCCCccccceeEEEEe
Confidence 488899988 73 2233332 13335889999999995 33333344566789999999887 22 111
Q ss_pred --eccCcCee-----EEEEeeCCCEEe
Q 024868 241 --RLLRKPAS-----VLSISLDGKYLA 260 (261)
Q Consensus 241 --~~~~~~v~-----~~~~s~dg~~la 260 (261)
..+...+. .++|+|||+.|+
T Consensus 308 ~~~~~~~~v~~~~~~~p~fspDG~~l~ 334 (740)
T 4a5s_A 308 IEMSTTGWVGRFRPSEPHFTLDGNSFY 334 (740)
T ss_dssp EEECSSSCSSSSSCCCCEECTTSSEEE
T ss_pred eeccCCceEccCcCCCceEcCCCCEEE
Confidence 23444443 789999999776
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=1e-23 Score=179.89 Aligned_cols=224 Identities=14% Similarity=0.129 Sum_probs=152.3
Q ss_pred EEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCC---CceEEEECCCCCeEEEEec--
Q 024868 9 CGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG---DPMTIAVNPSGDDFVCSTT-- 83 (261)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~-- 83 (261)
.++|+|+. .+++.+ .++ .++.||..++.. ...+..|.. .+.+++|||||++|++++.
T Consensus 20 ~~~~s~dg---~~~~~~-~d~--------~i~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~ 81 (719)
T 1z68_A 20 FPNWISGQ---EYLHQS-ADN--------NIVLYNIETGQS------YTILSNRTMKSVNASNYGLSPDRQFVYLESDYS 81 (719)
T ss_dssp CCEESSSS---EEEEEC-TTS--------CEEEEESSSCCE------EEEECHHHHHTTTCSEEEECTTSSEEEEEEEEE
T ss_pred ccEECCCC---eEEEEc-CCC--------CEEEEEcCCCcE------EEEEccccccccceeeEEECCCCCeEEEEecCc
Confidence 67898863 444444 466 788999887764 333443332 4889999999999998876
Q ss_pred -------CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC-C
Q 024868 84 -------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-K 155 (261)
Q Consensus 84 -------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~ 155 (261)
++.|++||+.+++... ...+ ...+..++|||||+.|+++ .++.|++|++.+++........+ .
T Consensus 82 ~~~~~s~~~~i~~~d~~~g~~~~------~~~l--~~~~~~~~~SPDG~~la~~-~~~~i~~~~~~~g~~~~l~~~~~~~ 152 (719)
T 1z68_A 82 KLWRYSYTATYYIYDLSNGEFVR------GNEL--PRPIQYLCWSPVGSKLAYV-YQNNIYLKQRPGDPPFQITFNGREN 152 (719)
T ss_dssp ECSSSCEEEEEEEEETTTTEECC------SSCC--CSSBCCEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCCCCBTT
T ss_pred eeEEeecceEEEEEECCCCcccc------ceec--CcccccceECCCCCEEEEE-ECCeEEEEeCCCCCcEEEecCCCcC
Confidence 6899999998876310 0111 2457889999999999998 58899999998877643322221 1
Q ss_pred ce-----------------eEEEEcCCCCEEEEecCCC----------------------------------cEEEEEcc
Q 024868 156 SV-----------------LDMDFSLDSEFLATTSTDG----------------------------------SARIWKTE 184 (261)
Q Consensus 156 ~v-----------------~~~~~s~~~~~l~~~~~d~----------------------------------~i~iwd~~ 184 (261)
.+ .+++|||||++|++++.|. .|++||+.
T Consensus 153 ~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~ 232 (719)
T 1z68_A 153 KIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT 232 (719)
T ss_dssp TEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS
T ss_pred CeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC
Confidence 12 4899999999999887542 78899998
Q ss_pred CCcEE--EEEee-----cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEE----CCCCeEEeee----eccCcCee-
Q 024868 185 DGVAW--TFLTR-----NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD----ISTWNKIGHK----RLLRKPAS- 248 (261)
Q Consensus 185 ~~~~~--~~~~~-----~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d----~~~~~~~~~~----~~~~~~v~- 248 (261)
+++.. ..+.. .+...+..++|+||++.+ +...........|++|| +.+++..... ..+...+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~-~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~ 311 (719)
T 1z68_A 233 YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVC-LQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGG 311 (719)
T ss_dssp CHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEE-EEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSS
T ss_pred CCCccceeEccCCccCCCCcceEEEeEEeCCCeEE-EEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEcc
Confidence 87652 12211 123358999999997641 11001122235699999 8777765434 34555565
Q ss_pred ----EEEEeeCCCEEe
Q 024868 249 ----VLSISLDGKYLA 260 (261)
Q Consensus 249 ----~~~~s~dg~~la 260 (261)
.+.|+|||+.|+
T Consensus 312 ~~~~~~~~spdg~~l~ 327 (719)
T 1z68_A 312 FFVSTPVFSYDAISYY 327 (719)
T ss_dssp SSCCCCEECTTSSCEE
T ss_pred ccCCccEECCCCCeEE
Confidence 889999999654
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.89 E-value=1.2e-21 Score=152.95 Aligned_cols=217 Identities=13% Similarity=0.038 Sum_probs=150.1
Q ss_pred cceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCC-CCceEEEECCCCCeEEE-EecCCcEEEEEEeCC
Q 024868 18 NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAVNPSGDDFVC-STTNGGCKLFEVYGG 95 (261)
Q Consensus 18 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~-~~~dg~i~i~~~~~~ 95 (261)
+..++++++.++ .|+.||..+.+. ...+..+. ..+..++|+|+++++++ ...++.|.+||+.++
T Consensus 10 ~~~~~v~~~~~~--------~v~~~d~~~~~~------~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~ 75 (349)
T 1jmx_B 10 GHEYMIVTNYPN--------NLHVVDVASDTV------YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC 75 (349)
T ss_dssp TCEEEEEEETTT--------EEEEEETTTTEE------EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred CCEEEEEeCCCC--------eEEEEECCCCcE------EEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC
Confidence 356788888888 999999987764 22333222 25789999999987654 446789999999876
Q ss_pred ccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC------------CeEEEEEccCceEEe--eccccCCceeEEE
Q 024868 96 ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------------GHLRIMHWPSLRIIL--DEPKAHKSVLDMD 161 (261)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------------~~i~~~d~~~~~~~~--~~~~~~~~v~~~~ 161 (261)
+.......... .......+..++|+|||+++++++.+ +.|.+||+.+++... ....+...+.+++
T Consensus 76 ~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 154 (349)
T 1jmx_B 76 KNTFHANLSSV-PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMR 154 (349)
T ss_dssp EEEEEEESCCS-TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEE
T ss_pred cEEEEEEcccc-cccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCccccee
Confidence 54221110000 00001236789999999999998765 899999998754322 1122334688999
Q ss_pred EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecC---------------------------------------------
Q 024868 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS--------------------------------------------- 196 (261)
Q Consensus 162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------------------------------------------- 196 (261)
|+|+|+ +++++ +.|++||+.+++.+..+..+.
T Consensus 155 ~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 231 (349)
T 1jmx_B 155 AADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 231 (349)
T ss_dssp ECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred ECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence 999999 55554 349999999988777664331
Q ss_pred ----------------------CCceEEEEEec-CCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEe
Q 024868 197 ----------------------DEKIELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS 253 (261)
Q Consensus 197 ----------------------~~~v~~~~~~p-~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 253 (261)
...+..++|+| +++++ +.+ ++.|++||+.+++.+..+.. ...+.+++|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l-----~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s 303 (349)
T 1jmx_B 232 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQI-----YGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFD 303 (349)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEE-----EEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEEC
T ss_pred ceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEE-----EEE--cCeEEEEECccCeEEEEEcC-CCCccceEEC
Confidence 01245677789 99873 333 78999999999988766553 3457899999
Q ss_pred eCCCEEe
Q 024868 254 LDGKYLA 260 (261)
Q Consensus 254 ~dg~~la 260 (261)
|||++|+
T Consensus 304 ~dg~~l~ 310 (349)
T 1jmx_B 304 KKGDKLY 310 (349)
T ss_dssp SSSSCEE
T ss_pred CCCCEEE
Confidence 9998876
No 157
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=9.4e-22 Score=173.97 Aligned_cols=227 Identities=14% Similarity=0.142 Sum_probs=167.7
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
.+.+.+++|+++ .++++++.++.. .+|.++..+... ..+..|. .+..++|+|||+.|+++ .
T Consensus 203 ~~~v~~~~~s~d----~l~~~~~~dg~~------~l~~~~~~g~~~-------~~l~~~~-~~~~~~~SpDG~~la~~-~ 263 (1045)
T 1k32_A 203 STHVSSPVIVGH----RIYFITDIDGFG------QIYSTDLDGKDL-------RKHTSFT-DYYPRHLNTDGRRILFS-K 263 (1045)
T ss_dssp SSCCEEEEEETT----EEEEEECTTSSC------EEEEEETTSCSC-------EECCCCC-SSCEEEEEESSSCEEEE-E
T ss_pred CCcccceEEeCC----EEEEEEeccCce------EEEEEeCCCCcc-------eEecCCC-CcceeeEcCCCCEEEEE-e
Confidence 456778888763 455566555533 889888765442 2344444 46778999999999887 5
Q ss_pred CCcEEEEEEeCCccccceeeee-----CCCCCCCCCeEEEEEe-eCCcEEEEeccCCeEEEEEccCceEEeeccccCC-c
Q 024868 84 NGGCKLFEVYGGATDINLLAKK-----MPPLQDAGPQKCLSFS-VDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-S 156 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~s-~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~ 156 (261)
++.|++|++..... .. +... .....+...+.+++|+ |||++|++++ ++.+++|++..++.. .+..+.. .
T Consensus 264 ~~~i~~~d~~~~~l-~~-l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~ 339 (1045)
T 1k32_A 264 GGSIYIFNPDTEKI-EK-IEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIR 339 (1045)
T ss_dssp TTEEEEECTTTCCE-EE-CCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEE
T ss_pred CCEEEEecCCceEe-ee-eccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcce
Confidence 88999999843321 11 1000 0000122368899999 9999999886 889999999877654 4555666 7
Q ss_pred eeEEEEcCCCCEEEEecCCCcEE-EEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868 157 VLDMDFSLDSEFLATTSTDGSAR-IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (261)
Q Consensus 157 v~~~~~s~~~~~l~~~~~d~~i~-iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~ 235 (261)
+..++|+ ||+.|++++.++.+. +||+.+++... +..+ ...+..++|+|||++ ++.++.++.|++||+.+++
T Consensus 340 ~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~-~~~~~~~~~SpDG~~-----la~~~~~~~v~~~d~~tg~ 411 (1045)
T 1k32_A 340 YVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEEN-LGNVFAMGVDRNGKF-----AVVANDRFEIMTVDLETGK 411 (1045)
T ss_dssp EEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCC-CCSEEEEEECTTSSE-----EEEEETTSEEEEEETTTCC
T ss_pred EEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCC-ccceeeeEECCCCCE-----EEEECCCCeEEEEECCCCc
Confidence 9999999 999999988888888 99998776543 4433 346999999999998 5677788999999999998
Q ss_pred EEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868 236 KIGHKRLLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 236 ~~~~~~~~~~~v~~~~~s~dg~~la~ 261 (261)
.......+...+.+++|||||++||+
T Consensus 412 ~~~~~~~~~~~v~~~~~SpDG~~la~ 437 (1045)
T 1k32_A 412 PTVIERSREAMITDFTISDNSRFIAY 437 (1045)
T ss_dssp EEEEEECSSSCCCCEEECTTSCEEEE
T ss_pred eEEeccCCCCCccceEECCCCCeEEE
Confidence 77666678888999999999999873
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.88 E-value=1.7e-20 Score=146.31 Aligned_cols=205 Identities=15% Similarity=0.124 Sum_probs=147.0
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCC------CCCceEEEECCCCCeEE
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES------EGDPMTIAVNPSGDDFV 79 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~ 79 (261)
.+..++|+|+. ..+++++..++ .|+.||..+.+. ...+..+ ...+..++|+|+|++|+
T Consensus 44 ~~~~~~~s~dg--~~~~v~~~~~~--------~i~~~d~~t~~~------~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 107 (349)
T 1jmx_B 44 GPGTAMMAPDN--RTAYVLNNHYG--------DIYGIDLDTCKN------TFHANLSSVPGEVGRSMYSFAISPDGKEVY 107 (349)
T ss_dssp SSCEEEECTTS--SEEEEEETTTT--------EEEEEETTTTEE------EEEEESCCSTTEEEECSSCEEECTTSSEEE
T ss_pred CCceeEECCCC--CEEEEEeCCCC--------cEEEEeCCCCcE------EEEEEcccccccccccccceEECCCCCEEE
Confidence 46678888753 44556666667 899999887664 2222211 22378899999999999
Q ss_pred EEecC------------CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE
Q 024868 80 CSTTN------------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII 147 (261)
Q Consensus 80 ~~~~d------------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~ 147 (261)
+++.+ +.|.+||+.+++.... .....+...+.+++|+|+|+ +++++ +.|.+||..+++..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-----~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~ 179 (349)
T 1jmx_B 108 ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP-----VRTFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYT 179 (349)
T ss_dssp EEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC-----SEEEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEE
T ss_pred EEcccccccccccccCCCeEEEEECCCccccce-----eeeccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCcee
Confidence 88765 8999999987543111 11122234578899999999 55553 34999999887765
Q ss_pred eeccccC--------------------------------------------------------------------CceeE
Q 024868 148 LDEPKAH--------------------------------------------------------------------KSVLD 159 (261)
Q Consensus 148 ~~~~~~~--------------------------------------------------------------------~~v~~ 159 (261)
..+..+. ..+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (349)
T 1jmx_B 180 VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFT 259 (349)
T ss_dssp EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEE
T ss_pred ccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCccee
Confidence 4433221 12456
Q ss_pred EEEcC-CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEe
Q 024868 160 MDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG 238 (261)
Q Consensus 160 ~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~ 238 (261)
++|+| ++++++++ ++.|.+||+.+++.+..+.... .+.+++|+|+|++ ++.++.++.|++||+++++.+.
T Consensus 260 ~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~-----l~~~~~~~~v~v~d~~~~~~~~ 330 (349)
T 1jmx_B 260 GLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH--TYYCVAFDKKGDK-----LYLGGTFNDLAVFNPDTLEKVK 330 (349)
T ss_dssp EEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS--CCCEEEECSSSSC-----EEEESBSSEEEEEETTTTEEEE
T ss_pred eEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC--CccceEECCCCCE-----EEEecCCCeEEEEeccccceee
Confidence 77889 99999888 8899999999999888776433 4789999999998 3446778999999999999887
Q ss_pred eeecc
Q 024868 239 HKRLL 243 (261)
Q Consensus 239 ~~~~~ 243 (261)
.+...
T Consensus 331 ~~~~~ 335 (349)
T 1jmx_B 331 NIKLP 335 (349)
T ss_dssp EEECS
T ss_pred eeecC
Confidence 76654
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=7.9e-19 Score=137.87 Aligned_cols=183 Identities=13% Similarity=0.155 Sum_probs=123.2
Q ss_pred CceEEEECCCCCeEEEEec-CCcEEEEEEeCCcc----c-ccee-eeeCCCCCCCCCeEEEEEeeCCcEEEEec-cCCeE
Q 024868 65 DPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGAT----D-INLL-AKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHL 136 (261)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~~~----~-~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i 136 (261)
.+.+++|+|+|+++++++. ++.+.+|++..... . .... ............+..++|+|||+++++++ .++.|
T Consensus 156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v 235 (361)
T 3scy_A 156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTV 235 (361)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEE
T ss_pred cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeE
Confidence 4588999999997766554 78999999986542 1 1000 00011222345678999999999887776 68999
Q ss_pred EEEEccCceEE--eec---cccCCceeEEEEcCCCCEEEEecC--CCcEEEEEcc--CCc--EEEEEeecCCCceEEEEE
Q 024868 137 RIMHWPSLRII--LDE---PKAHKSVLDMDFSLDSEFLATTST--DGSARIWKTE--DGV--AWTFLTRNSDEKIELCRF 205 (261)
Q Consensus 137 ~~~d~~~~~~~--~~~---~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~iwd~~--~~~--~~~~~~~~~~~~v~~~~~ 205 (261)
.+|++.+++.. ... ..+......++|+|||++|+++.. ++.|.+|++. +++ .+..+.. ...+..++|
T Consensus 236 ~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~ 313 (361)
T 3scy_A 236 IAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--GIHPRNFII 313 (361)
T ss_dssp EEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--SSCCCEEEE
T ss_pred EEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--CCCCceEEE
Confidence 99999876531 111 222235689999999999877665 4899999996 455 3333433 335889999
Q ss_pred ecCCCcceEEEEEeeCCCcEEEEE--ECCCCeEEeee-eccCcCeeEEEEe
Q 024868 206 SKDGTKPFLFCTVQRGDKALLAVY--DISTWNKIGHK-RLLRKPASVLSIS 253 (261)
Q Consensus 206 ~p~~~~~~~~~~~~~~~d~~i~~~--d~~~~~~~~~~-~~~~~~v~~~~~s 253 (261)
+|||+++ +++...++.|.+| |..+++..... ..+...+.++.|.
T Consensus 314 spdg~~l----~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 314 TPNGKYL----LVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CTTSCEE----EEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CCCCCEE----EEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 9999973 3445577899996 55567654332 2233567888886
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.86 E-value=7.3e-21 Score=158.63 Aligned_cols=216 Identities=14% Similarity=0.103 Sum_probs=151.4
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcC--CCCceecCCeEEeeecCCCCCceEEEECCCCCeE-EEE
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDP--KTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF-VCS 81 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~ 81 (261)
..|..++|+|+ .+++++..++ ......+|.++. .+.. . .+... ..+...+|+|+|+.+ ++.
T Consensus 65 ~~~~~~~~spd----~~l~~~~~~~---g~~~~~l~~~~~~~~g~~-------~-~l~~~-~~~~~~~~s~dg~~~~~~s 128 (582)
T 3o4h_A 65 NSVLDPHYGVG----RVILVRDVSK---GAEQHALFKVNTSRPGEE-------Q-RLEAV-KPMRILSGVDTGEAVVFTG 128 (582)
T ss_dssp SEECEECTTCS----EEEEEEECST---TSCCEEEEEEETTSTTCC-------E-ECTTS-CSBEEEEEEECSSCEEEEE
T ss_pred cccccccCCCC----eEEEEeccCC---CCcceEEEEEeccCCCcc-------c-cccCC-CCceeeeeCCCCCeEEEEe
Confidence 47888999974 4555554311 122347888887 4433 1 22222 234466888888643 333
Q ss_pred ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC----CeEEEEEccCceEEeeccccCCce
Q 024868 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----GHLRIMHWPSLRIILDEPKAHKSV 157 (261)
Q Consensus 82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~v 157 (261)
..++.+.+||+.+++.. .+. .+.. .+++|||||++|++++.+ +.|++||+.+++.. .+..+...+
T Consensus 129 ~~~~~~~l~d~~~g~~~-~l~-------~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~ 197 (582)
T 3o4h_A 129 ATEDRVALYALDGGGLR-ELA-------RLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSF 197 (582)
T ss_dssp ECSSCEEEEEEETTEEE-EEE-------EESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEE
T ss_pred cCCCCceEEEccCCcEE-Eee-------cCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCcc
Confidence 44555779999887531 111 1112 789999999999988766 78999999887764 455666788
Q ss_pred eEEEEcCCCCEEEEecCCC--cEEEEEccCCcEEEEEeecCCCceEEEE--------EecCCCcceEEEEEeeCCCcEEE
Q 024868 158 LDMDFSLDSEFLATTSTDG--SARIWKTEDGVAWTFLTRNSDEKIELCR--------FSKDGTKPFLFCTVQRGDKALLA 227 (261)
Q Consensus 158 ~~~~~s~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~--------~~p~~~~~~~~~~~~~~~d~~i~ 227 (261)
..++|||||+.|+++..++ .|++||+.+++.. .+..+. ..+..++ |+|||+. +++++.+++++
T Consensus 198 ~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~spdg~~-----~~~~~~~g~~~ 270 (582)
T 3o4h_A 198 SSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS-KDFSSYRPTAITWLGYLPDGRL-----AVVARREGRSA 270 (582)
T ss_dssp EEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC-SHHHHHCCSEEEEEEECTTSCE-----EEEEEETTEEE
T ss_pred ccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC-cChhhhhhccccceeEcCCCcE-----EEEEEcCCcEE
Confidence 9999999999999888888 8999999998877 554443 3455666 9999954 57778899999
Q ss_pred EEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 228 ~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
+|++ ++... .....+.+++|+ ||++++
T Consensus 271 l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~ 297 (582)
T 3o4h_A 271 VFID--GERVE---APQGNHGRVVLW-RGKLVT 297 (582)
T ss_dssp EEET--TEEEC---CCSSEEEEEEEE-TTEEEE
T ss_pred EEEE--CCeec---cCCCceEEEEec-CCEEEE
Confidence 9999 66543 334678899999 998775
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.86 E-value=2.5e-19 Score=141.00 Aligned_cols=210 Identities=10% Similarity=0.067 Sum_probs=138.1
Q ss_pred ceEEEEEcCCCCceecCCeEEeee-cCCCCCceEEEECCCCCeEEEEecCCcEEEEEEe-CCccccceeeeeCCCCCCCC
Q 024868 36 VLEIFSFDPKTTSVYTSPLVTYVF-DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY-GGATDINLLAKKMPPLQDAG 113 (261)
Q Consensus 36 ~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~~~~~~~~ 113 (261)
.+.++.+|..++.+.. .... ......+..++|+|+|++|++++.+ .+.+|++. +++.. ...... ..+
T Consensus 15 ~i~~~~~d~~~g~l~~----~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~-~~~~~~-----~~g 83 (365)
T 1jof_A 15 AIFTVQFDDEKLTCKL----IKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV-HEASHP-----IGG 83 (365)
T ss_dssp EEEEEEEETTTTEEEE----EEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE-EEEEEE-----CCS
T ss_pred cEEEEEEECCCCCEEE----eeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE-EeeEee-----cCC
Confidence 4567777877766411 1111 1233468899999999999888887 89999997 55431 111110 112
Q ss_pred CeEEEEEeeCCcE--EEEec-------------cCCeEEEEEccC-ceEEeecc----ccCCceeEEEEcCCCCEEEEec
Q 024868 114 PQKCLSFSVDGSR--FAAGG-------------VDGHLRIMHWPS-LRIILDEP----KAHKSVLDMDFSLDSEFLATTS 173 (261)
Q Consensus 114 ~v~~~~~s~~~~~--l~~~~-------------~d~~i~~~d~~~-~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~ 173 (261)
.+..++|+|||++ +++++ .++.+.+|++.. ++...... .+...+.+++|+|||++++++.
T Consensus 84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 163 (365)
T 1jof_A 84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD 163 (365)
T ss_dssp SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence 2456899999994 45553 688999999973 54332221 1334789999999999888765
Q ss_pred -CCCcEEEEEcc-CCcEEE--EEeec-CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC--CCeEE---eeeecc
Q 024868 174 -TDGSARIWKTE-DGVAWT--FLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TWNKI---GHKRLL 243 (261)
Q Consensus 174 -~d~~i~iwd~~-~~~~~~--~~~~~-~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~--~~~~~---~~~~~~ 243 (261)
.++.|++||+. +++... .+... +...++.++|+|||+++ .++...++.|.+|++. +++.. ..+...
T Consensus 164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l----~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~ 239 (365)
T 1jof_A 164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYL----YALMEAGNRICEYVIDPATHMPVYTHHSFPLI 239 (365)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEE----EEEETTTTEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEE----EEEECCCCeEEEEEEeCCCCcEEEccceEEcC
Confidence 46799999998 776532 23211 13358999999999973 2344557899999865 45532 112211
Q ss_pred C------c-------CeeEEE-EeeCCCEEe
Q 024868 244 R------K-------PASVLS-ISLDGKYLA 260 (261)
Q Consensus 244 ~------~-------~v~~~~-~s~dg~~la 260 (261)
. . .+..++ |+|||++|+
T Consensus 240 ~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~ 270 (365)
T 1jof_A 240 PPGIPDRDPETGKGLYRADVCALTFSGKYMF 270 (365)
T ss_dssp CTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred CCCcCCcccccccccccccEEEECCCCCEEE
Confidence 1 1 478899 999999875
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.86 E-value=2.1e-20 Score=148.05 Aligned_cols=227 Identities=8% Similarity=-0.001 Sum_probs=146.1
Q ss_pred EEEEeeCCcceEEEEecC-CCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEE
Q 024868 10 GSWIKRPENVNLVVLGKS-SRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCK 88 (261)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 88 (261)
.+|+|+ ...++..+. ++.. ++|.+|..++.. .....++...+..+.|+|||+.|++++.++.++
T Consensus 41 ~~~SpD---g~~l~~~~~~~g~~------~l~~~d~~~g~~------~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~ 105 (388)
T 3pe7_A 41 KCFTRD---GSKLLFGGAFDGPW------NYYLLDLNTQVA------TQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLM 105 (388)
T ss_dssp CCBCTT---SCEEEEEECTTSSC------EEEEEETTTCEE------EECCCSSCBCSSSCEECTTSSEEEEEETTTEEE
T ss_pred ccCCCC---CCEEEEEEcCCCCc------eEEEEeCCCCce------EEeeeCCCCCccceEEcCCCCEEEEEeCCCeEE
Confidence 568886 345555444 4433 799999988764 444555555566788999999999999899999
Q ss_pred EEEEeCCccccceeeeeCCCCCCCCCeEEE--EEeeCCcEEEEe----------------------ccCCeEEEEEccCc
Q 024868 89 LFEVYGGATDINLLAKKMPPLQDAGPQKCL--SFSVDGSRFAAG----------------------GVDGHLRIMHWPSL 144 (261)
Q Consensus 89 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~~~----------------------~~d~~i~~~d~~~~ 144 (261)
+||+.+++.... .. .+...+... .++|++++++.. ..+..|++||+.++
T Consensus 106 ~~d~~~g~~~~~-~~------~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g 178 (388)
T 3pe7_A 106 RVDLATLEENVV-YQ------VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG 178 (388)
T ss_dssp EEETTTCCEEEE-EE------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred EEECCCCcceee-ee------chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence 999988764211 10 112223333 348899988742 23467999999888
Q ss_pred eEEeeccccCCceeEEEEcC-CCCEEEEecCC------CcEEEEEccCCcEEEEEeecCC-CceEEEEEecCCCcceEEE
Q 024868 145 RIILDEPKAHKSVLDMDFSL-DSEFLATTSTD------GSARIWKTEDGVAWTFLTRNSD-EKIELCRFSKDGTKPFLFC 216 (261)
Q Consensus 145 ~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~~~~~ 216 (261)
+.. .+..+...+..++|+| ||+.|+....+ ..|.++|...++. ..+..+.. ..+..++|+|||+.++...
T Consensus 179 ~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~ 256 (388)
T 3pe7_A 179 EST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVS 256 (388)
T ss_dssp CEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEE
T ss_pred ceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEe
Confidence 653 3445556789999999 99988876653 3788888766554 33433332 2477889999999842211
Q ss_pred EEeeCCCcEEEEEECCCCeEEeeeeccC-----cCeeEEEEeeCCCEEe
Q 024868 217 TVQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLA 260 (261)
Q Consensus 217 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~v~~~~~s~dg~~la 260 (261)
...+..+..|++||+.+++......... .....+.|+|||+.|+
T Consensus 257 ~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~ 305 (388)
T 3pe7_A 257 YLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAP 305 (388)
T ss_dssp EETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-
T ss_pred cCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcce
Confidence 1111223359999999887532222111 0122347999999876
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.85 E-value=7.8e-20 Score=143.90 Aligned_cols=191 Identities=10% Similarity=0.065 Sum_probs=125.5
Q ss_pred CceEEEECCCCCe--EEEEe-------------cCCcEEEEEEeC-CccccceeeeeCCCCCCCCCeEEEEEeeCCcEEE
Q 024868 65 DPMTIAVNPSGDD--FVCST-------------TNGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA 128 (261)
Q Consensus 65 ~v~~~~~~~~~~~--l~~~~-------------~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 128 (261)
.+..++|+|+|++ +++++ .++.+.+|++.. +.. ...... ....+...+.+++|+|||++++
T Consensus 84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~-~~~~~~--~~~~~~~~~~~~~~spdG~~l~ 160 (365)
T 1jof_A 84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKL-EKNVQN--YEYQENTGIHGMVFDPTETYLY 160 (365)
T ss_dssp SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCE-EEEEEE--EECCTTCCEEEEEECTTSSEEE
T ss_pred CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcC-cceEee--EEeCCCCcceEEEECCCCCEEE
Confidence 3667899999995 44543 688999999974 332 111110 0012345789999999999888
Q ss_pred Eec-cCCeEEEEEcc-CceEEe--ecc--ccCCceeEEEEcCCCCEEEEecC-CCcEEEEEcc--CCcEEE---EEeecC
Q 024868 129 AGG-VDGHLRIMHWP-SLRIIL--DEP--KAHKSVLDMDFSLDSEFLATTST-DGSARIWKTE--DGVAWT---FLTRNS 196 (261)
Q Consensus 129 ~~~-~d~~i~~~d~~-~~~~~~--~~~--~~~~~v~~~~~s~~~~~l~~~~~-d~~i~iwd~~--~~~~~~---~~~~~~ 196 (261)
++. .++.|++|++. +++... ... .+...+..++|+|||+++++++. ++.|.+|++. +++... .+....
T Consensus 161 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~ 240 (365)
T 1jof_A 161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP 240 (365)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred EEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCC
Confidence 765 46789999998 665421 221 12456899999999999887764 6899999875 565432 222110
Q ss_pred ----C-C-------ceEEEE-EecCCCcceEEEEEeeCCC----cEEEEEECC-CCeEEee---eeccCcCeeEEEEee-
Q 024868 197 ----D-E-------KIELCR-FSKDGTKPFLFCTVQRGDK----ALLAVYDIS-TWNKIGH---KRLLRKPASVLSISL- 254 (261)
Q Consensus 197 ----~-~-------~v~~~~-~~p~~~~~~~~~~~~~~~d----~~i~~~d~~-~~~~~~~---~~~~~~~v~~~~~s~- 254 (261)
. . .+..++ |+|||+++| +...+.+ +.|.+|++. +++.... ...+...+..++|+|
T Consensus 241 ~~~~g~~~~~~~~~~~~~i~~~spdG~~l~---v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~ 317 (365)
T 1jof_A 241 PGIPDRDPETGKGLYRADVCALTFSGKYMF---ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPC 317 (365)
T ss_dssp TTCCCBCTTTSSBSEEEEEEEECTTSSEEE---EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEEC
T ss_pred CCcCCcccccccccccccEEEECCCCCEEE---EECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCC
Confidence 1 1 378899 999999742 1222222 289999996 5654321 223445567899999
Q ss_pred --CCCEEeC
Q 024868 255 --DGKYLAM 261 (261)
Q Consensus 255 --dg~~la~ 261 (261)
||++|++
T Consensus 318 ~~dg~~l~v 326 (365)
T 1jof_A 318 PWSDEWMAI 326 (365)
T ss_dssp TTCTTEEEE
T ss_pred CcCCCEEEE
Confidence 8999874
No 164
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=161.20 Aligned_cols=230 Identities=9% Similarity=-0.041 Sum_probs=148.6
Q ss_pred eeEEEEEeeCCcceEEEEecC---------CCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCe
Q 024868 7 VTCGSWIKRPENVNLVVLGKS---------SRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDD 77 (261)
Q Consensus 7 v~~~~~~~~~~~~~~~~~g~~---------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 77 (261)
|.+++|+|+ ...+++++. ++ .++.||..+++.... ..+ ...+..++|||||+.
T Consensus 62 ~~~~~~SpD---g~~la~~~~~~~~~~~s~~~--------~i~~~d~~~g~~~~~----~~l---~~~~~~~~~SPDG~~ 123 (719)
T 1z68_A 62 ASNYGLSPD---RQFVYLESDYSKLWRYSYTA--------TYYIYDLSNGEFVRG----NEL---PRPIQYLCWSPVGSK 123 (719)
T ss_dssp CSEEEECTT---SSEEEEEEEEEECSSSCEEE--------EEEEEETTTTEECCS----SCC---CSSBCCEEECSSTTC
T ss_pred eeeEEECCC---CCeEEEEecCceeEEeecce--------EEEEEECCCCccccc----eec---CcccccceECCCCCE
Confidence 789999996 456665544 34 899999887763100 112 246889999999999
Q ss_pred EEEEecCCcEEEEEEeCCccccceeeeeCC-CC-CC---------CCCeEEEEEeeCCcEEEEeccCC------------
Q 024868 78 FVCSTTNGGCKLFEVYGGATDINLLAKKMP-PL-QD---------AGPQKCLSFSVDGSRFAAGGVDG------------ 134 (261)
Q Consensus 78 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-~~-~~---------~~~v~~~~~s~~~~~l~~~~~d~------------ 134 (261)
|+++. ++.|++|++.++............ .+ .+ .....+++|||||++|++++.|.
T Consensus 124 la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~ 202 (719)
T 1z68_A 124 LAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYG 202 (719)
T ss_dssp EEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECC
T ss_pred EEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccC
Confidence 99875 778999999876542110000000 00 00 01225799999999999987542
Q ss_pred ----------------------eEEEEEccCceEE--ee------ccccCCceeEEEEcCCCCEEEEecCC----CcEEE
Q 024868 135 ----------------------HLRIMHWPSLRII--LD------EPKAHKSVLDMDFSLDSEFLATTSTD----GSARI 180 (261)
Q Consensus 135 ----------------------~i~~~d~~~~~~~--~~------~~~~~~~v~~~~~s~~~~~l~~~~~d----~~i~i 180 (261)
.|++||+.+++.. .. +..+...+..++|+||++++++.... ..|.+
T Consensus 203 ~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~ 282 (719)
T 1z68_A 203 DEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSI 282 (719)
T ss_dssp SSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEE
T ss_pred CCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEE
Confidence 7889999877642 11 12344578999999998877764332 24888
Q ss_pred EE----ccCCcEEEEEe---ecCCCceE-----EEEEecCCCcceEEEEEeeCC--CcEEEEEECCCCeEEeeeeccCcC
Q 024868 181 WK----TEDGVAWTFLT---RNSDEKIE-----LCRFSKDGTKPFLFCTVQRGD--KALLAVYDISTWNKIGHKRLLRKP 246 (261)
Q Consensus 181 wd----~~~~~~~~~~~---~~~~~~v~-----~~~~~p~~~~~~~~~~~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~ 246 (261)
|| ..++++...+. ..+...+. .+.|+|||+.++ +.+... ...|++||+.+++. ..+..+...
T Consensus 283 ~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~---~~~~~~~g~~~l~~~~~~~~~~-~~lt~~~~~ 358 (719)
T 1z68_A 283 CDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYY---KIFSDKDGYKHIHYIKDTVENA-IQITSGKWE 358 (719)
T ss_dssp EEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEE---EEEECTTSCEEEEEESSCSTTC-EECSCSSSC
T ss_pred EcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEE---EEEEccCCceEEEEEECCCCce-EecccCceE
Confidence 99 77776554442 22333455 789999999732 123333 34788889877663 344445556
Q ss_pred eeEEEEeeCCCEEe
Q 024868 247 ASVLSISLDGKYLA 260 (261)
Q Consensus 247 v~~~~~s~dg~~la 260 (261)
+..+.++ |++.|+
T Consensus 359 v~~~~~~-d~~~i~ 371 (719)
T 1z68_A 359 AINIFRV-TQDSLF 371 (719)
T ss_dssp EEEEEEE-CSSEEE
T ss_pred EEEEEEE-eCCEEE
Confidence 7777777 777765
No 165
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.84 E-value=5.8e-18 Score=131.32 Aligned_cols=241 Identities=12% Similarity=0.116 Sum_probs=163.8
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCC----------------CCCceEEEEEcCCCCceecCCeEEeee-cCCCCCce
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASS----------------SPSVLEIFSFDPKTTSVYTSPLVTYVF-DESEGDPM 67 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~v~ 67 (261)
+.+.++++.|+ .+++++...+.... +...-.|+.||..++.+ ...+ ..+-..+.
T Consensus 24 ~~v~~va~d~~---G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~------~~~~~~~~~~~p~ 94 (329)
T 3fvz_A 24 GQVSGVALDSK---NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI------LQSSGKNLFYLPH 94 (329)
T ss_dssp SCEEEEEECTT---CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE------EEEECTTTCSSEE
T ss_pred CCceEEEECCC---CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE------EeccCCCccCCce
Confidence 56889999885 46677666552110 00001588899877664 2222 24446789
Q ss_pred EEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeC---CCCCCCCCeEEEEEee-CCcEEEEec-cCCeEEEEEcc
Q 024868 68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKM---PPLQDAGPQKCLSFSV-DGSRFAAGG-VDGHLRIMHWP 142 (261)
Q Consensus 68 ~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~-~~~~l~~~~-~d~~i~~~d~~ 142 (261)
.++++|+|+.+++...++.|++|+..........+.... ....+......++++| +++++++.+ .++.|++|+ .
T Consensus 95 gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~ 173 (329)
T 3fvz_A 95 GLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-P 173 (329)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-T
T ss_pred EEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-C
Confidence 999999999888877789999999765421111111000 0011234678999999 788888875 689999999 5
Q ss_pred CceEEeecccc----------CCceeEEEEcCC-CCEEEEecCCCcEEEEEccCCcEEEEEeec-CCCceEEEEEec---
Q 024868 143 SLRIILDEPKA----------HKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSK--- 207 (261)
Q Consensus 143 ~~~~~~~~~~~----------~~~v~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~p--- 207 (261)
+++.+..+... -.....++++|+ ++++++...++.|++||..+++.+..+... ....+..++|+|
T Consensus 174 ~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~ 253 (329)
T 3fvz_A 174 SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFL 253 (329)
T ss_dssp TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEE
T ss_pred CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEE
Confidence 56654444221 123789999998 777788888899999999989988887532 233588899999
Q ss_pred ---CCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee---ccCcCeeEEEEeeCCCEEe
Q 024868 208 ---DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR---LLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 208 ---~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~---~~~~~v~~~~~s~dg~~la 260 (261)
+|+. .++...+..|++||..+++.+..+. .+...+..++++|||+.++
T Consensus 254 ~~~~g~~-----~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyv 307 (329)
T 3fvz_A 254 FAVNGKP-----YFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYI 307 (329)
T ss_dssp EEEECCC-----CTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEE
T ss_pred EEeCCCE-----EeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEE
Confidence 4432 2334455689999999999886653 3446688999999996554
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.83 E-value=3.1e-19 Score=150.94 Aligned_cols=200 Identities=11% Similarity=0.067 Sum_probs=133.5
Q ss_pred EEEEEcCC--C-CceecCCeEEeeecC-----CCCCceEEEECCCCCeEEEEecC----------CcEEEEEEeC-----
Q 024868 38 EIFSFDPK--T-TSVYTSPLVTYVFDE-----SEGDPMTIAVNPSGDDFVCSTTN----------GGCKLFEVYG----- 94 (261)
Q Consensus 38 ~i~~~~~~--~-~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------g~i~i~~~~~----- 94 (261)
.||.++.. + +.. ..+.. |...+..++|+|||+.|++++.+ ..|++|++.+
T Consensus 103 ~l~~~~~~~~g~~~~-------~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 103 RLYAFEPDAPGGAVP-------RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp CEEEECTTSTTCCCC-------EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred eEEEEcCCCCCCCCC-------EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence 78999876 3 331 12333 56678899999999999988776 5799999877
Q ss_pred -CccccceeeeeCCCC-CCCCCeEEEEEeeCCcEEEEeccC--------CeEEEEEcc-Cc--eEEeecccc-CCceeEE
Q 024868 95 -GATDINLLAKKMPPL-QDAGPQKCLSFSVDGSRFAAGGVD--------GHLRIMHWP-SL--RIILDEPKA-HKSVLDM 160 (261)
Q Consensus 95 -~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d--------~~i~~~d~~-~~--~~~~~~~~~-~~~v~~~ 160 (261)
+.. . ... .+...+..++|||||++|++++.+ ..|++||+. ++ .....+... ...+..+
T Consensus 176 ~~~~-~-------~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~ 247 (662)
T 3azo_A 176 RSAV-R-------ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQA 247 (662)
T ss_dssp GGGS-E-------ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEE
T ss_pred CCce-e-------EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcce
Confidence 332 1 111 234567788999999999987754 379999998 56 122333333 4678999
Q ss_pred EEcCCCCEEEEecCCC--cEEEEEccCCcEEEEEeecCCC-------ceEEEEEecCCCcceEEEEEeeCCCcEEEEE--
Q 024868 161 DFSLDSEFLATTSTDG--SARIWKTEDGVAWTFLTRNSDE-------KIELCRFSKDGTKPFLFCTVQRGDKALLAVY-- 229 (261)
Q Consensus 161 ~~s~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~-------~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~-- 229 (261)
.|+|||++++++..++ .|++||+.+++.......+... .+..++|+|+++. ++++.. +.+++|
T Consensus 248 ~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~-----~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 248 EWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLI-----AVVHGK-GAAVLGIL 321 (662)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCE-----EEEEBS-SSCEEEEE
T ss_pred EECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEE-----EEEEEc-CccEEEEE
Confidence 9999999878887788 5666666667654433322111 0457888999886 455555 777777
Q ss_pred ECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 230 DISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 230 d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
|+.+++ +..+..+...+..+ ++++++.++
T Consensus 322 d~~~~~-~~~l~~~~~~~~~~-~s~~~~~~~ 350 (662)
T 3azo_A 322 DPESGE-LVDAAGPWTEWAAT-LTVSGTRAV 350 (662)
T ss_dssp ETTTTE-EEECCSSCCEEEEE-EEEETTEEE
T ss_pred ECCCCc-EEEecCCCCeEEEE-EecCCCEEE
Confidence 666665 44555555556555 266666543
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.83 E-value=1e-18 Score=138.34 Aligned_cols=227 Identities=12% Similarity=0.020 Sum_probs=145.5
Q ss_pred eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEE--ECCCCCeEEEEe--
Q 024868 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIA--VNPSGDDFVCST-- 82 (261)
Q Consensus 7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~-- 82 (261)
++.++|+|+ ...++.+..++ .++.||..+++. ......+...+.... ++|+++.++...
T Consensus 83 ~~~~~~spd---g~~l~~~~~~~--------~l~~~d~~~g~~------~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~ 145 (388)
T 3pe7_A 83 TFGGFLSPD---DDALFYVKDGR--------NLMRVDLATLEE------NVVYQVPAEWVGYGTWVANSDCTKLVGIEIR 145 (388)
T ss_dssp SSSCEECTT---SSEEEEEETTT--------EEEEEETTTCCE------EEEEECCTTEEEEEEEEECTTSSEEEEEEEE
T ss_pred ccceEEcCC---CCEEEEEeCCC--------eEEEEECCCCcc------eeeeechhhcccccceeECCCCCeecccccc
Confidence 345678886 45677766666 899999987764 333444555444333 489999887432
Q ss_pred --------------------cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccC------Ce
Q 024868 83 --------------------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVD------GH 135 (261)
Q Consensus 83 --------------------~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d------~~ 135 (261)
.+..|++||+.+++. ..+ ..+...+..++|+| ||+.|+....+ ..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~l-------~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~ 217 (388)
T 3pe7_A 146 REDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-TVI-------LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDAR 217 (388)
T ss_dssp GGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-EEE-------EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCS
T ss_pred CcccccccccchhhhhhccCCcceEEEEECCCCce-EEe-------ecCCccccccEECCCCCCEEEEEEecCCCCCcce
Confidence 336788899887653 111 12345688999999 99998877643 37
Q ss_pred EEEEEccCceEEeeccccC--CceeEEEEcCCCCEEEEecC-CC----cEEEEEccCCcEEEEEeecCC----CceEEEE
Q 024868 136 LRIMHWPSLRIILDEPKAH--KSVLDMDFSLDSEFLATTST-DG----SARIWKTEDGVAWTFLTRNSD----EKIELCR 204 (261)
Q Consensus 136 i~~~d~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~-d~----~i~iwd~~~~~~~~~~~~~~~----~~v~~~~ 204 (261)
|.++|...++. ..+..+. ..+..+.|+|||+.|+..+. ++ .|++||+.+++.......... ......+
T Consensus 218 l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 296 (388)
T 3pe7_A 218 MWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSL 296 (388)
T ss_dssp EEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSE
T ss_pred EEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCe
Confidence 88888765554 3333333 25788999999998766443 22 399999998875433221110 0011237
Q ss_pred EecCCCcceEEEEE-----eeCCCcEEEEEECCCCeEEeeeeccCc-----------CeeEEEEeeCCCEEeC
Q 024868 205 FSKDGTKPFLFCTV-----QRGDKALLAVYDISTWNKIGHKRLLRK-----------PASVLSISLDGKYLAM 261 (261)
Q Consensus 205 ~~p~~~~~~~~~~~-----~~~~d~~i~~~d~~~~~~~~~~~~~~~-----------~v~~~~~s~dg~~la~ 261 (261)
|+|||+.+++. .. ....+..|++||+.+++.. .+..+.. .+.+++|+|||++|++
T Consensus 297 ~spdg~~l~~~-~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~ 367 (388)
T 3pe7_A 297 MVGDGSDAPVD-VQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILF 367 (388)
T ss_dssp EEEEECCC-------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred EccCCCcceeE-eeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEE
Confidence 99999984211 10 1255678999999987754 3444444 4788999999998873
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.83 E-value=1.4e-18 Score=146.86 Aligned_cols=228 Identities=14% Similarity=0.045 Sum_probs=146.0
Q ss_pred CceeeEEEEEeeCCcceEEEEe--cCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCce---------EEEEC
Q 024868 4 GGTVTCGSWIKRPENVNLVVLG--KSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPM---------TIAVN 72 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~~~~ 72 (261)
+..|..++|+++ ..+++.+ +.++ ...||.... ++. ...+..|...+. ...|+
T Consensus 23 ~~~~~~~~~s~~---~~~~~~~~~~~~~------~~~l~~~~~-~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (662)
T 3azo_A 23 SGRPACVGAVGD---EVWWVAPRPAEAG------RATLVRRRA-DGA-------EESALPAPWNVRNRVFEYSGFPWAGV 85 (662)
T ss_dssp CSCCEEEEEETT---EEEEEEEETTTTT------EEEEEEECT-TSC-------EEESSCTTCCBCCCGGGTCCCCEEEE
T ss_pred CCccceeEEcCC---eEEEEecCcccCC------cEEEEEECC-CCC-------cceeCCCCccccccccccCCccceee
Confidence 456788888863 3444444 2233 236676632 222 234455555554 55565
Q ss_pred --CCCCe-EEEEec-CCcEEEEEEe--C-CccccceeeeeCCCCC---CCCCeEEEEEeeCCcEEEEeccC---------
Q 024868 73 --PSGDD-FVCSTT-NGGCKLFEVY--G-GATDINLLAKKMPPLQ---DAGPQKCLSFSVDGSRFAAGGVD--------- 133 (261)
Q Consensus 73 --~~~~~-l~~~~~-dg~i~i~~~~--~-~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d--------- 133 (261)
|||+. |+.++. +..|+++++. + +.. .. +.... +...+..++|+|||+.|++++.+
T Consensus 86 ~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-~~-----l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~ 159 (662)
T 3azo_A 86 PRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-RP-----LTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV 159 (662)
T ss_dssp CCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-EE-----CSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred eecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-Ee-----ccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence 99998 776654 4455555554 2 221 11 11111 34567899999999999988766
Q ss_pred -CeEEEEEccC------ceEEeecc-ccCCceeEEEEcCCCCEEEEecCC--------CcEEEEEcc-CC--cEEEEEee
Q 024868 134 -GHLRIMHWPS------LRIILDEP-KAHKSVLDMDFSLDSEFLATTSTD--------GSARIWKTE-DG--VAWTFLTR 194 (261)
Q Consensus 134 -~~i~~~d~~~------~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d--------~~i~iwd~~-~~--~~~~~~~~ 194 (261)
..|++||+.+ ++. ..+. .+...+..++|||||++|+.++.+ ..|++||+. ++ .....+..
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~ 238 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG 238 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred eeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence 5799999987 554 3444 455678889999999999877644 379999998 56 13334443
Q ss_pred cCCCceEEEEEecCCCcceEEEEEeeCCCc--EEEEEECCCCeEEeeeeccCcC--------eeEEEEeeCCCEEe
Q 024868 195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDISTWNKIGHKRLLRKP--------ASVLSISLDGKYLA 260 (261)
Q Consensus 195 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~--------v~~~~~s~dg~~la 260 (261)
.....+..++|+|||+. ++++..++ .|++||+.+++.......+... +..++|+|++++++
T Consensus 239 ~~~~~~~~~~~spdg~l-----~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~ 309 (662)
T 3azo_A 239 GPEEAIAQAEWAPDGSL-----IVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAV 309 (662)
T ss_dssp ETTBCEEEEEECTTSCE-----EEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEE
T ss_pred CCCceEcceEECCCCeE-----EEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEE
Confidence 33345899999999994 45666667 7888887777654333322211 46788999998775
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.83 E-value=4.5e-18 Score=133.53 Aligned_cols=202 Identities=9% Similarity=0.032 Sum_probs=142.0
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec----------CCcEEEEEEeCCccccceeeeeCC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT----------NGGCKLFEVYGGATDINLLAKKMP 107 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~~~~~~~~~~~~~~~~~~ 107 (261)
.++.||..+.++ ...++.+..+ .++|+|||+++++++. ++.|.+||..+.+....+... ..
T Consensus 32 ~v~v~D~~t~~~------~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~-~~ 102 (361)
T 2oiz_A 32 RVHVYDYTNGKF------LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLP-PK 102 (361)
T ss_dssp EEEEEETTTCCE------EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEEC-TT
T ss_pred eEEEEECCCCeE------EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcC-cc
Confidence 788899877765 2344444444 8999999999988763 567999998766542222111 01
Q ss_pred CCCCCCCeEEEEEeeCCcEEEEecc--CCeEEEEEccCceEEee-ccc-------------------------------c
Q 024868 108 PLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILD-EPK-------------------------------A 153 (261)
Q Consensus 108 ~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~~~d~~~~~~~~~-~~~-------------------------------~ 153 (261)
...+......++++|||++|+++.. ++.|.+||+.+++.+.. +.. .
T Consensus 103 ~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~ 182 (361)
T 2oiz_A 103 RVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGE 182 (361)
T ss_dssp BCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECT
T ss_pred ccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECC
Confidence 1112245677999999999998864 57899999876655433 100 0
Q ss_pred CCc-------------------------------------e---------------------------------eEEEEc
Q 024868 154 HKS-------------------------------------V---------------------------------LDMDFS 163 (261)
Q Consensus 154 ~~~-------------------------------------v---------------------------------~~~~~s 163 (261)
.+. + ..++|+
T Consensus 183 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~ 262 (361)
T 2oiz_A 183 DGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH 262 (361)
T ss_dssp TSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEE
T ss_pred CCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEe
Confidence 000 0 015778
Q ss_pred CCCCEEEEecC-----------CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868 164 LDSEFLATTST-----------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (261)
Q Consensus 164 ~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~ 232 (261)
|+++.++++.. .+.|.+||+.+++.+.++..+. +.+++|+|||++ +++++. +.|.+||+.
T Consensus 263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~---p~~ia~spdg~~-----l~v~n~-~~v~v~D~~ 333 (361)
T 2oiz_A 263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD---ALSMTIDQQRNL-----MLTLDG-GNVNVYDIS 333 (361)
T ss_dssp TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT---CCEEEEETTTTE-----EEEECS-SCEEEEECS
T ss_pred cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC---eeEEEECCCCCE-----EEEeCC-CeEEEEECC
Confidence 88777766532 3479999999999999988654 889999999997 344555 899999999
Q ss_pred CC--eEEeeeeccCcCeeEEEEeeCCC
Q 024868 233 TW--NKIGHKRLLRKPASVLSISLDGK 257 (261)
Q Consensus 233 ~~--~~~~~~~~~~~~v~~~~~s~dg~ 257 (261)
++ +.+..+...+.....++++|||+
T Consensus 334 t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 334 QPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99 88877656677788999999996
No 170
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=7.5e-19 Score=150.34 Aligned_cols=190 Identities=9% Similarity=-0.025 Sum_probs=129.4
Q ss_pred CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC---------C
Q 024868 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---------G 134 (261)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------~ 134 (261)
.....++|+|||++++++ |++|++||+.+++.... +.... ..........+.|||||++|++++.+ +
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVF-LENST-FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEE-ECTTT-TTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEE-Eechh-hhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 346689999999888875 89999999988875221 11110 00111233568999999999998765 5
Q ss_pred eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCC----------------
Q 024868 135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE---------------- 198 (261)
Q Consensus 135 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------------- 198 (261)
.+++||+.+++.. .+..+...+..++|||||+.||.+. ++.|++||+.+++..+........
T Consensus 93 ~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 93 SYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence 6789999988763 4555566899999999999999885 689999999888755432211111
Q ss_pred -ceEEEEEecCCCcceEEEEEe-----------------------------e--CCCcEEEEEECCC---C---eEEeee
Q 024868 199 -KIELCRFSKDGTKPFLFCTVQ-----------------------------R--GDKALLAVYDIST---W---NKIGHK 240 (261)
Q Consensus 199 -~v~~~~~~p~~~~~~~~~~~~-----------------------------~--~~d~~i~~~d~~~---~---~~~~~~ 240 (261)
....+.|||||+++.....-. + ....+|++||+.+ + +.. .+
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~-~l 249 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI-QI 249 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE-EE
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE-Ee
Confidence 123589999999842211000 0 0112689999998 7 333 23
Q ss_pred ec------cCcCeeEEEEeeCCCEEe
Q 024868 241 RL------LRKPASVLSISLDGKYLA 260 (261)
Q Consensus 241 ~~------~~~~v~~~~~s~dg~~la 260 (261)
.. +...+..++|||||+.++
T Consensus 250 ~~~~~~~~~~~~~~~~~wspdg~~~~ 275 (740)
T 4a5s_A 250 TAPASMLIGDHYLCDVTWATQERISL 275 (740)
T ss_dssp CCCHHHHTSCEEEEEEEEEETTEEEE
T ss_pred cCCccCCCCCeEEEEEEEeCCCeEEE
Confidence 22 556789999999999654
No 171
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.81 E-value=5.7e-17 Score=123.85 Aligned_cols=222 Identities=10% Similarity=0.065 Sum_probs=153.2
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG 85 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 85 (261)
-..+++|.|+ +..+++++..++ .|+.|++.+. . . .+..+...+.+++++|+|+.+++...++
T Consensus 29 ~~eg~~~d~~--g~~l~~~~~~~~--------~i~~~~~~~~-~------~-~~~~~~~~~~~l~~~~dg~l~v~~~~~~ 90 (296)
T 3e5z_A 29 WTEGPVYVPA--RSAVIFSDVRQN--------RTWAWSDDGQ-L------S-PEMHPSHHQNGHCLNKQGHLIACSHGLR 90 (296)
T ss_dssp SEEEEEEEGG--GTEEEEEEGGGT--------EEEEEETTSC-E------E-EEESSCSSEEEEEECTTCCEEEEETTTT
T ss_pred cccCCeEeCC--CCEEEEEeCCCC--------EEEEEECCCC-e------E-EEECCCCCcceeeECCCCcEEEEecCCC
Confidence 3467889885 244777887777 8999998875 3 1 2344667799999999999877766678
Q ss_pred cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEE----ec-------------cCCeEEEEEccCceEEe
Q 024868 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA----GG-------------VDGHLRIMHWPSLRIIL 148 (261)
Q Consensus 86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~----~~-------------~d~~i~~~d~~~~~~~~ 148 (261)
.|.+||..+++... ..... .......+..++++|+|+++++ +. ..+.|..++.. ++. .
T Consensus 91 ~i~~~d~~~g~~~~-~~~~~--~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~ 165 (296)
T 3e5z_A 91 RLERQREPGGEWES-IADSF--EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-S 165 (296)
T ss_dssp EEEEECSTTCCEEE-EECEE--TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-E
T ss_pred eEEEEcCCCCcEEE-Eeecc--CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-E
Confidence 89999987665311 11110 0011235678999999998887 32 13456666654 433 3
Q ss_pred eccccCCceeEEEEcCCCCEEEEecCCCcEEEEEcc-CCcE---EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCc
Q 024868 149 DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-DGVA---WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA 224 (261)
Q Consensus 149 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~-~~~~---~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~ 224 (261)
....+......++|+|+++.+++.+.++.|++||+. +++. ...+ ......+.+++++++|+. .++. ++
T Consensus 166 ~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l-----~v~~--~~ 237 (296)
T 3e5z_A 166 APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLI-----WASA--GD 237 (296)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCE-----EEEE--TT
T ss_pred EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCE-----EEEc--CC
Confidence 334444567899999999988777788999999997 5554 3333 223334678999999985 2333 67
Q ss_pred EEEEEECCCCeEEeeeeccCcCeeEEEE-eeCCCEEe
Q 024868 225 LLAVYDISTWNKIGHKRLLRKPASVLSI-SLDGKYLA 260 (261)
Q Consensus 225 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~-s~dg~~la 260 (261)
.|.+||.. ++.+..+..+.. +.+++| +||++.|.
T Consensus 238 ~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~ 272 (296)
T 3e5z_A 238 GVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLY 272 (296)
T ss_dssp EEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEE
T ss_pred eEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEE
Confidence 89999986 677666666666 899999 58888765
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.80 E-value=1.9e-16 Score=122.86 Aligned_cols=226 Identities=17% Similarity=0.167 Sum_probs=150.7
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN- 84 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d- 84 (261)
.+.+++|.++ ..+++++..++ .|+.||+.++.+ ......+...+.+++++|+|+.+++...+
T Consensus 46 ~~~~~~~~~~---g~l~~~~~~~~--------~i~~~d~~~~~~------~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~ 108 (333)
T 2dg1_A 46 QLEGLNFDRQ---GQLFLLDVFEG--------NIFKINPETKEI------KRPFVSHKANPAAIKIHKDGRLFVCYLGDF 108 (333)
T ss_dssp CEEEEEECTT---SCEEEEETTTC--------EEEEECTTTCCE------EEEEECSSSSEEEEEECTTSCEEEEECTTS
T ss_pred cccCcEECCC---CCEEEEECCCC--------EEEEEeCCCCcE------EEEeeCCCCCcceEEECCCCcEEEEeCCCC
Confidence 3577888764 45777777777 899999887664 22232456789999999999877776655
Q ss_pred ---CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc------CCeEEEEEccCceEEeeccccCC
Q 024868 85 ---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV------DGHLRIMHWPSLRIILDEPKAHK 155 (261)
Q Consensus 85 ---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~ 155 (261)
+.|.+||..++.... .. ........+.+++++|+|+++++... .+.|..+|..+++.. .+.....
T Consensus 109 ~~~~~i~~~d~~~~~~~~-~~----~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~ 182 (333)
T 2dg1_A 109 KSTGGIFAATENGDNLQD-II----EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNIS 182 (333)
T ss_dssp SSCCEEEEECTTSCSCEE-EE----CSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEES
T ss_pred CCCceEEEEeCCCCEEEE-EE----ccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCC
Confidence 579999987665321 11 11122457899999999988776643 355666765544432 2222334
Q ss_pred ceeEEEEcCCCCEEE-EecCCCcEEEEEccC-CcEEEEE-----ee-cCCCceEEEEEecCCCcceEEEEEeeCCCcEEE
Q 024868 156 SVLDMDFSLDSEFLA-TTSTDGSARIWKTED-GVAWTFL-----TR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227 (261)
Q Consensus 156 ~v~~~~~s~~~~~l~-~~~~d~~i~iwd~~~-~~~~~~~-----~~-~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~ 227 (261)
.+..++|+|+|+.++ +.+.++.|.+||+.+ ++....+ .. .....+..++++++|+. .++...++.|.
T Consensus 183 ~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l-----~v~~~~~~~v~ 257 (333)
T 2dg1_A 183 VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNL-----YVAMYGQGRVL 257 (333)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCE-----EEEEETTTEEE
T ss_pred cccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCE-----EEEEcCCCEEE
Confidence 578899999998654 445678999999964 3332211 11 11124788999999985 34555567899
Q ss_pred EEECCCCeEEeeeeccCc------CeeEEEEeeCCCEEe
Q 024868 228 VYDISTWNKIGHKRLLRK------PASVLSISLDGKYLA 260 (261)
Q Consensus 228 ~~d~~~~~~~~~~~~~~~------~v~~~~~s~dg~~la 260 (261)
+||. +++.+..+..... .+.+++|+||++.|.
T Consensus 258 ~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~ 295 (333)
T 2dg1_A 258 VFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLI 295 (333)
T ss_dssp EECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEE
T ss_pred EECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEE
Confidence 9998 4666555554432 578999999987664
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.80 E-value=2.6e-16 Score=119.54 Aligned_cols=224 Identities=10% Similarity=0.047 Sum_probs=152.5
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeee----cCCCCCceEEEE-CCCCCeEEE
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF----DESEGDPMTIAV-NPSGDDFVC 80 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~-~~~~~~l~~ 80 (261)
.+.++++.++ ..++++...++ .|..||++.... ..... .++...+..+++ .++++.+++
T Consensus 31 ~p~~v~~~~~---g~l~v~~~~~~--------~i~~~d~~g~~~-----~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~ 94 (286)
T 1q7f_A 31 EPSGVAVNAQ---NDIIVADTNNH--------RIQIFDKEGRFK-----FQFGECGKRDSQLLYPNRVAVVRNSGDIIVT 94 (286)
T ss_dssp CEEEEEECTT---CCEEEEEGGGT--------EEEEECTTSCEE-----EEECCBSSSTTCBSSEEEEEEETTTTEEEEE
T ss_pred CCceEEECCC---CCEEEEECCCC--------EEEEECCCCcEE-----EEecccCCCcccccCceEEEEEcCCCeEEEE
Confidence 4677888764 45777766677 899999875432 11111 124457889999 577776666
Q ss_pred Eec-CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecc--ccCCce
Q 024868 81 STT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP--KAHKSV 157 (261)
Q Consensus 81 ~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~v 157 (261)
... ++.|++|+. ++..... . .......+.+++++|+|+++++...++.|.+||.. ++....+. .+...+
T Consensus 95 ~~~~~~~i~~~d~-~g~~~~~-----~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p 166 (286)
T 1q7f_A 95 ERSPTHQIQIYNQ-YGQFVRK-----F-GATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFP 166 (286)
T ss_dssp ECGGGCEEEEECT-TSCEEEE-----E-CTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSE
T ss_pred cCCCCCEEEEECC-CCcEEEE-----e-cCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCc
Confidence 533 788999993 3332111 1 11223567899999999988887778999999954 44433332 223468
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecC-CCceEEEEEecCCCcceEEEEEeeCCCc-EEEEEECCCCe
Q 024868 158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKA-LLAVYDISTWN 235 (261)
Q Consensus 158 ~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~~~~~~~~~d~-~i~~~d~~~~~ 235 (261)
..++++|+|+++++...++.|++||. +++.+..+.... ...+..++++|+|+. .++...++ .|.+||. +++
T Consensus 167 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l-----~v~~~~~~~~i~~~~~-~g~ 239 (286)
T 1q7f_A 167 NGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEI-----LIADNHNNFNLTIFTQ-DGQ 239 (286)
T ss_dssp EEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCE-----EEEECSSSCEEEEECT-TSC
T ss_pred EEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCE-----EEEeCCCCEEEEEECC-CCC
Confidence 99999999998888888899999997 456666664332 135889999999975 45566665 9999996 456
Q ss_pred EEeeeeccC--cCeeEEEEeeCCCEEe
Q 024868 236 KIGHKRLLR--KPASVLSISLDGKYLA 260 (261)
Q Consensus 236 ~~~~~~~~~--~~v~~~~~s~dg~~la 260 (261)
.+..+..+. ..+.+++++|+|++++
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~g~l~v 266 (286)
T 1q7f_A 240 LISALESKVKHAQCFDVALMDDGSVVL 266 (286)
T ss_dssp EEEEEEESSCCSCEEEEEEETTTEEEE
T ss_pred EEEEEcccCCCCcceeEEECCCCcEEE
Confidence 655555433 2467899999998765
No 174
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.79 E-value=5.1e-18 Score=134.59 Aligned_cols=226 Identities=7% Similarity=0.005 Sum_probs=139.6
Q ss_pred eeEEEEEeeCCcceEEEEe-cCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCC-ceEEEECCCCCeEEEEecC
Q 024868 7 VTCGSWIKRPENVNLVVLG-KSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD-PMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 7 v~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d 84 (261)
+..++|+|+ ...++.. ..++.. .++.+|..++.. . .+..+... ...+.|+|||++|+..+.+
T Consensus 38 ~~~~~~Spd---G~~l~~~~~~~g~~------~l~~~d~~~~~~------~-~l~~~~~~~~~~~~~spdg~~l~~~~~~ 101 (396)
T 3c5m_A 38 FYQKCFTQD---GKKLLFAGDFDGNR------NYYLLNLETQQA------V-QLTEGKGDNTFGGFISTDERAFFYVKNE 101 (396)
T ss_dssp TTSCCBCTT---SCEEEEEECTTSSC------EEEEEETTTTEE------E-ECCCSSCBCTTTCEECTTSSEEEEEETT
T ss_pred eecCcCCCC---CCEEEEEEecCCCc------eEEEEECCCCcE------E-EeecCCCCccccceECCCCCEEEEEEcC
Confidence 556678875 3344433 332322 789999877663 2 23333333 3348899999999999888
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEE-------------------EEEeeCCcEEEEe-----ccCCeEEEEE
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC-------------------LSFSVDGSRFAAG-----GVDGHLRIMH 140 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~s~~~~~l~~~-----~~d~~i~~~d 140 (261)
+.|++|++.+++... +.... ...... +.|+|+++.++.. ..+..|++||
T Consensus 102 ~~l~~~d~~~~~~~~-~~~~~------~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d 174 (396)
T 3c5m_A 102 LNLMKVDLETLEEQV-IYTVD------EEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVD 174 (396)
T ss_dssp TEEEEEETTTCCEEE-EEECC------TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEE
T ss_pred CcEEEEECCCCCcEE-EEecc------cccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEE
Confidence 899999998765311 11100 111111 3456777666544 3556899999
Q ss_pred ccCceEEeeccccCCceeEEEEcC-CCCEEEEecCC------CcEEEEEccCCcEEEEEeecC-CCceEEEEEecCCCcc
Q 024868 141 WPSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTD------GSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKP 212 (261)
Q Consensus 141 ~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~ 212 (261)
+.+++... +..+...+..+.|+| +++.|+..+.+ ..|.+||+..++.. .+..+. ...+..++|+|||+++
T Consensus 175 ~~~g~~~~-~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l 252 (396)
T 3c5m_A 175 IETGELEV-IHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAM 252 (396)
T ss_dssp TTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCE
T ss_pred CCCCcEEe-eccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEE
Confidence 98877543 334556789999999 78877765543 46888998766543 333222 2247889999999983
Q ss_pred eEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEee-CCCEEe
Q 024868 213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL-DGKYLA 260 (261)
Q Consensus 213 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la 260 (261)
+......+..++.|++||+.+++...... ... .. +.|+| ||++|+
T Consensus 253 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~ 298 (396)
T 3c5m_A 253 AYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMV 298 (396)
T ss_dssp EEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEE
T ss_pred EEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEE
Confidence 22111111122569999999887543222 222 23 89999 999876
No 175
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.78 E-value=1.3e-16 Score=135.96 Aligned_cols=234 Identities=9% Similarity=-0.038 Sum_probs=153.6
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
..+..++|+|+ ..+++.+..++ | .....|+.+|..+++... ..+.. ..+..++|+|||+.|+.++.+
T Consensus 125 ~~~~~~~~SPD---g~~la~~~~~~--G-~~~~~i~v~d~~tg~~~~-----~~~~~--~~~~~~~wspDg~~l~~~~~~ 191 (710)
T 2xdw_A 125 VALRGYAFSED---GEYFAYGLSAS--G-SDWVTIKFMKVDGAKELP-----DVLER--VKFSCMAWTHDGKGMFYNAYP 191 (710)
T ss_dssp EEEEEEEECTT---SSEEEEEEEET--T-CSCEEEEEEETTTTEEEE-----EEEEE--ECSCCEEECTTSSEEEEEECC
T ss_pred EEEEEEEECCC---CCEEEEEEcCC--C-CceEEEEEEECCCCCCCc-----ccccC--cccceEEEEeCCCEEEEEEEC
Confidence 35778899986 44566544322 1 122378999998877411 11221 236789999999999988877
Q ss_pred Cc----------------EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-----CCeEEEEEccC
Q 024868 85 GG----------------CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----DGHLRIMHWPS 143 (261)
Q Consensus 85 g~----------------i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----d~~i~~~d~~~ 143 (261)
+. |++|++.++.....++. ....+...+..+.|+|||++|+..+. +..|++||+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~---~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCA---EFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEE---CCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred CccccccccccccCCCCEEEEEECCCCcccceEEe---ccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence 65 99999977653211111 11112345788999999999888764 56899999976
Q ss_pred ------ce-EEeeccccCCceeEEEEcCCCCEEEEecCC----CcEEEEEccCCc--EEEEEeecCC-CceEEEEEecCC
Q 024868 144 ------LR-IILDEPKAHKSVLDMDFSLDSEFLATTSTD----GSARIWKTEDGV--AWTFLTRNSD-EKIELCRFSKDG 209 (261)
Q Consensus 144 ------~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~i~iwd~~~~~--~~~~~~~~~~-~~v~~~~~~p~~ 209 (261)
+. ....+..+...+.. .|+|+|+.|+..+.. ..|.+||+.+++ ....+..+.. ..+..++|++++
T Consensus 269 ~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 347 (710)
T 2xdw_A 269 ESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN 347 (710)
T ss_dssp SSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT
T ss_pred cccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC
Confidence 42 23334444444444 488999887766543 369999998764 2344444433 358889998666
Q ss_pred CcceEEEEEeeCCCc--EEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 210 TKPFLFCTVQRGDKA--LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 210 ~~~~~~~~~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
.. +++...++ .|++||+.+++.+..+..+...+..++++|+++.|+
T Consensus 348 ~l-----v~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~ 395 (710)
T 2xdw_A 348 FL-----VLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF 395 (710)
T ss_dssp EE-----EEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred EE-----EEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence 54 34555555 577888877776666666677788899999998665
No 176
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.77 E-value=4e-16 Score=117.79 Aligned_cols=210 Identities=12% Similarity=0.119 Sum_probs=155.3
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCC-CCceEEEECCCCCeEEEEecCCcEEEEEEeCCcc
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT 97 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~ 97 (261)
.+++++++.++ .|..||..+++. ...+..+. ..+.++.++|+|+.++ +.++.|+.||. +++.
T Consensus 5 ~~~lv~~~~~~--------~v~~~d~~tG~~------~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~ 67 (276)
T 3no2_A 5 QHLLVGGSGWN--------KIAIINKDTKEI------VWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRE 67 (276)
T ss_dssp CEEEEECTTCS--------EEEEEETTTTEE------EEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCE
T ss_pred CcEEEeeCCCC--------EEEEEECCCCeE------EEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCE
Confidence 57899999999 999999978776 44455444 4688999999999888 34667998888 5543
Q ss_pred ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-CCeEEEEEccCceEEeecc------ccCCceeEEEEcCCCCEEE
Q 024868 98 DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILDEP------KAHKSVLDMDFSLDSEFLA 170 (261)
Q Consensus 98 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~ 170 (261)
..+... .....+.++.+.|+|+.+++.+. ++.+..+|. +++.+..+. .++.....+++.++|++++
T Consensus 68 ~W~~~~------~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv 140 (276)
T 3no2_A 68 LWNIAA------PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLV 140 (276)
T ss_dssp EEEEEC------CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEE
T ss_pred EEEEcC------CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEE
Confidence 222211 11235788899999999998776 777887874 666554432 1222455677899999999
Q ss_pred EecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccC------
Q 024868 171 TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR------ 244 (261)
Q Consensus 171 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~------ 244 (261)
+...++.|..||.+ |+.+.++.... .+.++...++|+. ++++..++.|..+|..+|+.+..+....
T Consensus 141 ~~~~~~~v~~~d~~-G~~~w~~~~~~--~~~~~~~~~~g~~-----~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l 212 (276)
T 3no2_A 141 PLFATSEVREIAPN-GQLLNSVKLSG--TPFSSAFLDNGDC-----LVACGDAHCFVQLNLESNRIVRRVNANDIEGVQL 212 (276)
T ss_dssp EETTTTEEEEECTT-SCEEEEEECSS--CCCEEEECTTSCE-----EEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCC
T ss_pred EecCCCEEEEECCC-CCEEEEEECCC--CccceeEcCCCCE-----EEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccc
Confidence 99999999999988 99988887542 3667788899987 5666777789999999999887665332
Q ss_pred cCeeEEEEeeCCCEEe
Q 024868 245 KPASVLSISLDGKYLA 260 (261)
Q Consensus 245 ~~v~~~~~s~dg~~la 260 (261)
..+..++..++|+.++
T Consensus 213 ~~~~~~~~~~~G~i~v 228 (276)
T 3no2_A 213 FFVAQLFPLQNGGLYI 228 (276)
T ss_dssp SEEEEEEECTTSCEEE
T ss_pred cccccceEcCCCCEEE
Confidence 2267777888887765
No 177
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.77 E-value=3.3e-18 Score=135.64 Aligned_cols=217 Identities=10% Similarity=-0.029 Sum_probs=139.5
Q ss_pred EEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceE-------------------EE
Q 024868 10 GSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMT-------------------IA 70 (261)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~ 70 (261)
++|+|+ ...++....++ .++.+|..++.. ......+...... +.
T Consensus 86 ~~~spd---g~~l~~~~~~~--------~l~~~d~~~~~~------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~ 148 (396)
T 3c5m_A 86 GFISTD---ERAFFYVKNEL--------NLMKVDLETLEE------QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRD 148 (396)
T ss_dssp CEECTT---SSEEEEEETTT--------EEEEEETTTCCE------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGG
T ss_pred ceECCC---CCEEEEEEcCC--------cEEEEECCCCCc------EEEEecccccCCCCCEEEeccCCccccccccccc
Confidence 668775 45666666666 789999877653 2223323332222 35
Q ss_pred ECCCCCeEEEE-----ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccC------CeEEE
Q 024868 71 VNPSGDDFVCS-----TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVD------GHLRI 138 (261)
Q Consensus 71 ~~~~~~~l~~~-----~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d------~~i~~ 138 (261)
|+|+++.++.. ..+..|++||+.+++... + ..+...+..+.|+| +++.|+..+.+ ..|.+
T Consensus 149 ~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-~-------~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~ 220 (396)
T 3c5m_A 149 WQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEV-I-------HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWL 220 (396)
T ss_dssp CCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEE-E-------EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEE
T ss_pred cCCCCcceeeeeeccCCCcceEEEEECCCCcEEe-e-------ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEE
Confidence 68888877654 345678899987765311 1 12345688999999 88877766533 46888
Q ss_pred EEccCceEEeeccccC-C-ceeEEEEcCCCCEEEEecCC-----CcEEEEEccCCcEEEEEeecCCCceEEEEEec-CCC
Q 024868 139 MHWPSLRIILDEPKAH-K-SVLDMDFSLDSEFLATTSTD-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSK-DGT 210 (261)
Q Consensus 139 ~d~~~~~~~~~~~~~~-~-~v~~~~~s~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p-~~~ 210 (261)
||+..++.. .+..+. . .+..+.|+|||++|+..+.+ +.|++||+.+++...... ... .. +.|+| ||+
T Consensus 221 ~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~--~~-~~~s~~dg~ 295 (396)
T 3c5m_A 221 VNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP--CS-HLMSNFDGS 295 (396)
T ss_dssp EETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS--EE-EEEECSSSS
T ss_pred EECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC--CC-CCccCCCCc
Confidence 898765533 233332 2 57889999999988776543 349999999887654332 112 33 88999 999
Q ss_pred cceEEEEEee---------------CCCcEEEEEECCCCeEEeeeeccCc-----------CeeEEEEeeCCCEEeC
Q 024868 211 KPFLFCTVQR---------------GDKALLAVYDISTWNKIGHKRLLRK-----------PASVLSISLDGKYLAM 261 (261)
Q Consensus 211 ~~~~~~~~~~---------------~~d~~i~~~d~~~~~~~~~~~~~~~-----------~v~~~~~s~dg~~la~ 261 (261)
.+ + ..+ ..+..|++||+.+++.. .+..+.. .+..++|+|||++|++
T Consensus 296 ~l-~---~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 367 (396)
T 3c5m_A 296 LM-V---GDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLF 367 (396)
T ss_dssp EE-E---EEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred eE-E---EecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEE
Confidence 62 1 111 14578999999887653 3333333 2567899999998863
No 178
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.76 E-value=6.6e-16 Score=116.21 Aligned_cols=224 Identities=9% Similarity=0.005 Sum_probs=147.5
Q ss_pred eeeEEEEEeeCCcceEEE-EecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 6 TVTCGSWIKRPENVNLVV-LGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
...++++.++ .++.+ +...++ .|+.|+..+... ......+...+.+++++++|+.+++.. +
T Consensus 25 ~p~~i~~~~~---g~l~v~~~~~~~--------~i~~~~~~~~~~------~~~~~~~~~~p~~i~~~~~g~l~v~~~-~ 86 (270)
T 1rwi_B 25 SPSGVAVDSA---GNVYVTSEGMYG--------RVVKLATGSTGT------TVLPFNGLYQPQGLAVDGAGTVYVTDF-N 86 (270)
T ss_dssp CEEEEEECTT---CCEEEEECSSSC--------EEEEECC-----------EECCCCSCCSCCCEEECTTCCEEEEET-T
T ss_pred CccceEECCC---CCEEEEccCCCC--------cEEEecCCCccc------ceEeeCCcCCcceeEECCCCCEEEEcC-C
Confidence 4567777764 34555 445566 788898765442 111122335688999999998665554 8
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcC
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL 164 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~ 164 (261)
+.|.+||..+..... . .......+..++++|+|+++++...++.|.+|+..+.............+.+++++|
T Consensus 87 ~~i~~~d~~~~~~~~------~-~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~ 159 (270)
T 1rwi_B 87 NRVVTLAAGSNNQTV------L-PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN 159 (270)
T ss_dssp TEEEEECTTCSCCEE------C-CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT
T ss_pred CEEEEEeCCCceEee------e-ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC
Confidence 889999876543210 1 112235688999999999777777788999998655443322222334678899999
Q ss_pred CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccC
Q 024868 165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244 (261)
Q Consensus 165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~ 244 (261)
+|+++++...++.|.+||.............. ..+.+++++++|.. .++...++.|.+||..............
T Consensus 160 ~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~d~~g~l-----~v~~~~~~~v~~~~~~~~~~~~~~~~~~ 233 (270)
T 1rwi_B 160 SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDI-TAPWGIAVDEAGTV-----YVTEHNTNQVVKLLAGSTTSTVLPFTGL 233 (270)
T ss_dssp TCCEEEEEGGGTEEEEECTTTCCEEECCCSSC-CSEEEEEECTTCCE-----EEEETTTSCEEEECTTCSCCEECCCCSC
T ss_pred CCCEEEEECCCCEEEEEecCCCceEeecccCC-CCceEEEECCCCCE-----EEEECCCCcEEEEcCCCCcceeeccCCC
Confidence 99977777778899999988766543322222 35889999999964 3556667889999987654332211222
Q ss_pred cCeeEEEEeeCCCEEe
Q 024868 245 KPASVLSISLDGKYLA 260 (261)
Q Consensus 245 ~~v~~~~~s~dg~~la 260 (261)
..+.+++++++|+.++
T Consensus 234 ~~p~~i~~~~~g~l~v 249 (270)
T 1rwi_B 234 NTPLAVAVDSDRTVYV 249 (270)
T ss_dssp SCEEEEEECTTCCEEE
T ss_pred CCceeEEECCCCCEEE
Confidence 5678999999998654
No 179
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.73 E-value=5.4e-15 Score=112.95 Aligned_cols=224 Identities=11% Similarity=0.054 Sum_probs=145.8
Q ss_pred EEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEE
Q 024868 9 CGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCK 88 (261)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 88 (261)
+..|+++ ...++++....+ .|+.||+.+... . .+ .....+.+++++++|+++++ . ++.|.
T Consensus 17 gp~w~~~--~~~l~~~d~~~~--------~i~~~d~~~~~~------~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~ 76 (297)
T 3g4e_A 17 SPVWEEV--SNSLLFVDIPAK--------KVCRWDSFTKQV------Q-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFC 76 (297)
T ss_dssp EEEEETT--TTEEEEEETTTT--------EEEEEETTTCCE------E-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEE
T ss_pred CCeEECC--CCEEEEEECCCC--------EEEEEECCCCcE------E-EE-eCCCceEEEEECCCCCEEEE-E-CCeEE
Confidence 5667764 366777777777 899999987653 1 12 23467899999999995554 4 45699
Q ss_pred EEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC---------CeEEEEEccCceEEeeccccCCceeE
Q 024868 89 LFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---------GHLRIMHWPSLRIILDEPKAHKSVLD 159 (261)
Q Consensus 89 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------~~i~~~d~~~~~~~~~~~~~~~~v~~ 159 (261)
+||..++.... +. . .........+.+++++|+|+++++.... ..-.+|.+..................
T Consensus 77 ~~d~~~g~~~~-~~-~-~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~png 153 (297)
T 3g4e_A 77 ALNWKEQSAVV-LA-T-VDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNG 153 (297)
T ss_dssp EEETTTTEEEE-EE-E-CCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEE
T ss_pred EEECCCCcEEE-EE-e-cCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccc
Confidence 99987665311 11 1 1111113457899999999976654221 22344444322222223333345688
Q ss_pred EEEcCCCCEEE-EecCCCcEEEEEc--cCCcEE--EEEee--cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868 160 MDFSLDSEFLA-TTSTDGSARIWKT--EDGVAW--TFLTR--NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (261)
Q Consensus 160 ~~~s~~~~~l~-~~~~d~~i~iwd~--~~~~~~--~~~~~--~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~ 232 (261)
++|+||++.++ +.+.++.|.+||+ .++... +.+.. .....+..++++++|+. .++....+.|..||..
T Consensus 154 i~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~l-----wva~~~~~~v~~~d~~ 228 (297)
T 3g4e_A 154 LDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKL-----WVACYNGGRVIRLDPV 228 (297)
T ss_dssp EEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCE-----EEEEETTTEEEEECTT
T ss_pred eEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCE-----EEEEcCCCEEEEEcCC
Confidence 99999998665 4556789999997 455432 12211 11234788999999975 3444456789999999
Q ss_pred CCeEEeeeeccCcCeeEEEEe-eCCCEEe
Q 024868 233 TWNKIGHKRLLRKPASVLSIS-LDGKYLA 260 (261)
Q Consensus 233 ~~~~~~~~~~~~~~v~~~~~s-~dg~~la 260 (261)
+++.+..+..+...+++++|. ||++.|.
T Consensus 229 tG~~~~~i~~p~~~~t~~~f~g~d~~~L~ 257 (297)
T 3g4e_A 229 TGKRLQTVKLPVDKTTSCCFGGKNYSEMY 257 (297)
T ss_dssp TCCEEEEEECSSSBEEEEEEESGGGCEEE
T ss_pred CceEEEEEECCCCCceEEEEeCCCCCEEE
Confidence 899887777766788999999 8988764
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.73 E-value=8.2e-16 Score=119.90 Aligned_cols=187 Identities=13% Similarity=0.105 Sum_probs=121.1
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC---Cc--EEEEEEeCCccccceeeeeCCCCCCC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---GG--CKLFEVYGGATDINLLAKKMPPLQDA 112 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~--i~i~~~~~~~~~~~~~~~~~~~~~~~ 112 (261)
.||.+|..++.. ..+ ..+..++|+|||++|+..+.+ +. |++|++.+++. ..+ ....
T Consensus 44 ~l~~~d~~~~~~-------~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~-~~l-------~~~~ 104 (347)
T 2gop_A 44 TIVIENLKNNAR-------RFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS-KKI-------LEAK 104 (347)
T ss_dssp EEEEEETTTCCE-------EEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE-EEE-------EEES
T ss_pred eEEEEeCCCCce-------EEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce-EEE-------EcCC
Confidence 788999877653 122 468899999999999887654 33 66667666542 111 1112
Q ss_pred CCeEEEEEeeCCcEEEEeccC---------------------------CeEEEEEccCceEEeeccccCCceeEEEEcCC
Q 024868 113 GPQKCLSFSVDGSRFAAGGVD---------------------------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD 165 (261)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~d---------------------------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~ 165 (261)
. +..++|+|||+.|++++.+ ..|++||+.+++.+..+.. . .+..+.|+||
T Consensus 105 ~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spd 181 (347)
T 2gop_A 105 N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRD 181 (347)
T ss_dssp E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETT
T ss_pred C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCC
Confidence 3 8899999999998887632 5699999988776233333 3 7889999999
Q ss_pred CCEEEEecCCC-------cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCC-------CcEEEEEEC
Q 024868 166 SEFLATTSTDG-------SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-------KALLAVYDI 231 (261)
Q Consensus 166 ~~~l~~~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~-------d~~i~~~d~ 231 (261)
| +++++..+. ...||.+.+++. ..+..+ . .+..+ +|||++++ +.+.. ...|++||
T Consensus 182 g-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~-~~~~~--spdg~~l~----~~~~~~~~~~~~~~~l~~~d- 250 (347)
T 2gop_A 182 K-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-V-SFYAV--DSDGERIL----LYGKPEKKYMSEHNKLYIYD- 250 (347)
T ss_dssp E-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-E-SEEEE--EECSSCEE----EEECCSSSCCCSSCEEEEEC-
T ss_pred e-EEEEEecccccccccccccEEEeCCCce-EEeccC-c-ceeeE--CCCCCEEE----EEEccccCCccccceEEEEC-
Confidence 9 777765542 345555545554 344433 2 35544 99999832 22221 35789998
Q ss_pred CCCeEEeeeeccCcCeeE-EEEeeCCCEEe
Q 024868 232 STWNKIGHKRLLRKPASV-LSISLDGKYLA 260 (261)
Q Consensus 232 ~~~~~~~~~~~~~~~v~~-~~~s~dg~~la 260 (261)
+++.......+...+.. +.|+ || +++
T Consensus 251 -~~~~~~l~~~~~~~~~~~~~~s-dg-~~~ 277 (347)
T 2gop_A 251 -GKEVMGILDEVDRGVGQAKIKD-GK-VYF 277 (347)
T ss_dssp -SSCEEESSTTCCSEEEEEEEET-TE-EEE
T ss_pred -CCceEeccccCCcccCCccEEc-Cc-EEE
Confidence 55544333444567776 8999 88 544
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.73 E-value=7.5e-15 Score=111.43 Aligned_cols=199 Identities=11% Similarity=0.112 Sum_probs=135.0
Q ss_pred eeeEEEEEeeCCcceEEEEecC-CCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 6 TVTCGSWIKRPENVNLVVLGKS-SRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
.+.++++.+. ...++++... ++ .|..||.....+ ......+...+.+++++|+|+.+++...+
T Consensus 78 ~p~~i~~~~~--~g~l~v~~~~~~~--------~i~~~d~~g~~~------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~ 141 (286)
T 1q7f_A 78 YPNRVAVVRN--SGDIIVTERSPTH--------QIQIYNQYGQFV------RKFGATILQHPRGVTVDNKGRIIVVECKV 141 (286)
T ss_dssp SEEEEEEETT--TTEEEEEECGGGC--------EEEEECTTSCEE------EEECTTTCSCEEEEEECTTSCEEEEETTT
T ss_pred CceEEEEEcC--CCeEEEEcCCCCC--------EEEEECCCCcEE------EEecCccCCCceEEEEeCCCCEEEEECCC
Confidence 4566777422 2455555532 55 788898554332 11112344578999999999877776678
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecccc--CCceeEEEE
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA--HKSVLDMDF 162 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~v~~~~~ 162 (261)
+.|++|+...... . . .....+...+..++++|+|+++++...++.|++||.. ++.+..+... ...+..+++
T Consensus 142 ~~i~~~~~~g~~~-~-~----~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~ 214 (286)
T 1q7f_A 142 MRVIIFDQNGNVL-H-K----FGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGI 214 (286)
T ss_dssp TEEEEECTTSCEE-E-E----EECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEE
T ss_pred CEEEEEcCCCCEE-E-E----eCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEE
Confidence 8899998643221 1 1 1111223468999999999988877788999999974 4444444322 246889999
Q ss_pred cCCCCEEEEecCCC-cEEEEEccCCcEEEEEeecCC-CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868 163 SLDSEFLATTSTDG-SARIWKTEDGVAWTFLTRNSD-EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (261)
Q Consensus 163 s~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~ 234 (261)
+|+|+++++...++ .|.+||. +++.+..+..+.. ..+.+++++|+|+. +++ +.++.|++|++...
T Consensus 215 d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l-----~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 215 NSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSV-----VLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEE-----EEE-ETTTEEEEEECSCC
T ss_pred CCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcE-----EEE-CCCCeEEEEEcccc
Confidence 99999888887776 9999995 5677777765432 23779999999975 344 35889999998654
No 182
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.73 E-value=4.2e-16 Score=132.53 Aligned_cols=233 Identities=10% Similarity=-0.018 Sum_probs=143.6
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
..+..++|+|+ ..++|.+...+ |. ....|+.+|..+++.... ..+.. .....++|+|||+.|+.++.+
T Consensus 121 ~~~~~~~~SPD---G~~la~~~~~~--G~-~~~~i~v~dl~tg~~~~~----~~~~~--~~~~~~~wspDg~~l~~~~~d 188 (695)
T 2bkl_A 121 VSLGTWAVSWD---GKKVAFAQKPN--AA-DEAVLHVIDVDSGEWSKV----DVIEG--GKYATPKWTPDSKGFYYEWLP 188 (695)
T ss_dssp EEEEEEEECTT---SSEEEEEEEET--TC-SCCEEEEEETTTCCBCSS----CCBSC--CTTCCCEECTTSSEEEEEECC
T ss_pred EEEEEEEECCC---CCEEEEEECCC--CC-ceEEEEEEECCCCCCcCC----cccCc--ccccceEEecCCCEEEEEEec
Confidence 36888999986 34555332211 00 112899999988774100 01111 112689999999999998887
Q ss_pred Cc-------------EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC----eEEEEEccCceEE
Q 024868 85 GG-------------CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG----HLRIMHWPSLRII 147 (261)
Q Consensus 85 g~-------------i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~----~i~~~d~~~~~~~ 147 (261)
.. |++|++.++.....++. ....+...+..+.|||||++|++.+.++ .|++++..+++.
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~---~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~- 264 (695)
T 2bkl_A 189 TDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH---ERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF- 264 (695)
T ss_dssp CCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE---CCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-
T ss_pred CCCCCccccCCCCCEEEEEECCCCchhceEEE---ecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-
Confidence 65 99999987653222211 1112235688999999999998877655 677777655543
Q ss_pred eeccccCCceeEEEEcCCCCEEEEec---CCCcEEEEEccCCcE--EEEEeecC-CCceEEEEEecCCCcceEEEEEeeC
Q 024868 148 LDEPKAHKSVLDMDFSLDSEFLATTS---TDGSARIWKTEDGVA--WTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRG 221 (261)
Q Consensus 148 ~~~~~~~~~v~~~~~s~~~~~l~~~~---~d~~i~iwd~~~~~~--~~~~~~~~-~~~v~~~~~~p~~~~~~~~~~~~~~ 221 (261)
..+..+...+....+ ++|.+++.+. .++.|.+||+.+++. ...+..+. ...+..++|+ ++.. +++..
T Consensus 265 ~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~l-----v~~~~ 337 (695)
T 2bkl_A 265 RLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHL-----SLEYL 337 (695)
T ss_dssp EEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEE-----EEEEE
T ss_pred EEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEE-----EEEEE
Confidence 333444445556666 5666444443 257899999987653 23333332 4457888888 4443 45666
Q ss_pred CCcEEEEEECC-CCeEEeeeecc-CcCeeEEEEeeCCCEEe
Q 024868 222 DKALLAVYDIS-TWNKIGHKRLL-RKPASVLSISLDGKYLA 260 (261)
Q Consensus 222 ~d~~i~~~d~~-~~~~~~~~~~~-~~~v~~~~~s~dg~~la 260 (261)
.|+..++|.+. +++.+..+..+ ...+..++++||++.|+
T Consensus 338 ~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~ 378 (695)
T 2bkl_A 338 KDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAY 378 (695)
T ss_dssp ETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEE
T ss_pred ECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEE
Confidence 67766666543 35544445444 45677888999988765
No 183
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.72 E-value=3.8e-15 Score=115.40 Aligned_cols=213 Identities=6% Similarity=-0.111 Sum_probs=141.4
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cCCcEEEEEEeCCcc
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGAT 97 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~ 97 (261)
..+.++...++ .+..+|..+.+. ...+. ....+..++++++++ +.++. .++.|.+||..+.+.
T Consensus 54 ~~lyv~~~~~~--------~v~viD~~t~~~------~~~i~-~~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~ 117 (328)
T 3dsm_A 54 GIGWIVVNNSH--------VIFAIDINTFKE------VGRIT-GFTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEI 117 (328)
T ss_dssp TEEEEEEGGGT--------EEEEEETTTCCE------EEEEE-CCSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEE
T ss_pred CEEEEEEcCCC--------EEEEEECcccEE------EEEcC-CCCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeE
Confidence 44556665566 889999988764 22333 346788999999985 55444 789999999987764
Q ss_pred ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCC-
Q 024868 98 DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD- 175 (261)
Q Consensus 98 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d- 175 (261)
....... ...........+++ .+++.+++.. .++.|.++|..+++....+.. ......+.++|+|++++++..+
T Consensus 118 ~~~i~~g--~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~ 193 (328)
T 3dsm_A 118 TGYIECP--DMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGY 193 (328)
T ss_dssp EEEEECT--TCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBC
T ss_pred EEEEEcC--CccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCc
Confidence 2221100 00000113455667 4454444443 488999999998887655443 2345788999999977776654
Q ss_pred ---------CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee--eeccC
Q 024868 176 ---------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH--KRLLR 244 (261)
Q Consensus 176 ---------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~--~~~~~ 244 (261)
+.|.++|..+++....+.......+..++|+|+++.+| .+.. .|.+||..+++.... .....
T Consensus 194 ~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~ly-----v~~~--~v~~~d~~t~~~~~~~~~~~~~ 266 (328)
T 3dsm_A 194 EGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLY-----WINN--DIWRMPVEADRVPVRPFLEFRD 266 (328)
T ss_dssp TTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEE-----EESS--SEEEEETTCSSCCSSCSBCCCS
T ss_pred cCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEE-----EEcc--EEEEEECCCCceeeeeeecCCC
Confidence 78999999999888777643333589999999999843 2222 799999988775321 11113
Q ss_pred cCeeEEEEeeCCCE
Q 024868 245 KPASVLSISLDGKY 258 (261)
Q Consensus 245 ~~v~~~~~s~dg~~ 258 (261)
.....++++|++..
T Consensus 267 ~~p~gi~vdp~~g~ 280 (328)
T 3dsm_A 267 TKYYGLTVNPNNGE 280 (328)
T ss_dssp SCEEEEEECTTTCC
T ss_pred CceEEEEEcCCCCe
Confidence 56788999995443
No 184
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.71 E-value=5e-16 Score=121.51 Aligned_cols=177 Identities=10% Similarity=0.017 Sum_probs=130.0
Q ss_pred CceEEEECCCCCeEEEEecCCcEEEEEEeCCccccc----eeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEE
Q 024868 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN----LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH 140 (261)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 140 (261)
.+..+++++...++++|+.++ +++|++........ .... ........ |+.++| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~-~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTF-KWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCC-SEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccc-eEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 688999999999999998886 77899865431000 0000 01112234 999999 89999999 889999999
Q ss_pred ccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEee
Q 024868 141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (261)
Q Consensus 141 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~ 220 (261)
+++.........+...+.++.+.+.. +++++.||.+.+||+++++... + .. .|++++|||+| . +.+
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~-~---~~-~Vs~v~WSpkG-~------~vg 178 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ-L---AQ-NVTSFDVTNSQ-L------AVL 178 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE-E---EE-SEEEEEECSSE-E------EEE
T ss_pred chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc-c---cC-CceEEEEcCCc-e------EEE
Confidence 98765444444555578887776542 8888899999999999887653 2 12 59999999999 3 456
Q ss_pred CCCcEEEEEECCCCeE--Eeee------e---ccCcCeeEEEEeeCCCEEeC
Q 024868 221 GDKALLAVYDISTWNK--IGHK------R---LLRKPASVLSISLDGKYLAM 261 (261)
Q Consensus 221 ~~d~~i~~~d~~~~~~--~~~~------~---~~~~~v~~~~~s~dg~~la~ 261 (261)
..||++++|+...++. ...+ . .+...|.++.|.++++++++
T Consensus 179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 6789999999887764 3334 1 25678999999999999874
No 185
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.71 E-value=6.2e-16 Score=120.59 Aligned_cols=209 Identities=10% Similarity=-0.019 Sum_probs=130.3
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN- 84 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d- 84 (261)
.+..++|+|+ ...++....++ ......||.++..++.. ..... +.. +..++|+|||+.|+.++.+
T Consensus 60 ~~~~~~~SpD---g~~la~~~~~~---~~~~~~l~~~~~~~g~~------~~l~~-~~~-~~~~~wspdg~~l~~~~~~~ 125 (347)
T 2gop_A 60 NATMPRISPD---GKKIAFMRANE---EKKVSEIWVADLETLSS------KKILE-AKN-IRSLEWNEDSRKLLIVGFKR 125 (347)
T ss_dssp SCEEEEECTT---SSEEEEEEEET---TTTEEEEEEEETTTTEE------EEEEE-ESE-EEEEEECTTSSEEEEEEECC
T ss_pred cCCCeEECCC---CCEEEEEEecc---CCCcceEEEEECCCCce------EEEEc-CCC-ccceeECCCCCEEEEEEccC
Confidence 3567889886 33455443221 01223799999877653 22222 223 8999999999999887642
Q ss_pred --------------------------CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC-----
Q 024868 85 --------------------------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----- 133 (261)
Q Consensus 85 --------------------------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----- 133 (261)
..|++||+.+++.... +. . . .+..+.|+||| +++++..+
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~-l~----~---~-~~~~~~~spdg-~~~~~~~~~~~~~ 195 (347)
T 2gop_A 126 REDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEE-FE----K---P-RFSSGIWHRDK-IVVNVPHREIIPQ 195 (347)
T ss_dssp CC---------CCCC---------CEEEEEEEETTTTEEEEE-EE----E---E-TTCEEEEETTE-EEEEEECCCSSCC
T ss_pred CCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEee-ec----C---C-CcccccCCCCe-EEEEEeccccccc
Confidence 4688888876653111 11 1 1 56789999999 77766543
Q ss_pred -C-eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCC--------CcEEEEEccCCcEEEEEeecCCCceEE-
Q 024868 134 -G-HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD--------GSARIWKTEDGVAWTFLTRNSDEKIEL- 202 (261)
Q Consensus 134 -~-~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~v~~- 202 (261)
. ...+|.+.+++. ..+..+ ..+..+ +|||++|+..+.+ ..|.+|| +++.. .+.......+..
T Consensus 196 ~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~~~~~~~~~~ 268 (347)
T 2gop_A 196 YFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM-GILDEVDRGVGQA 268 (347)
T ss_dssp SSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-ESSTTCCSEEEEE
T ss_pred ccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE-eccccCCcccCCc
Confidence 2 334444444443 333333 344444 9999988877644 3677777 55543 333333445776
Q ss_pred EEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEee
Q 024868 203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL 254 (261)
Q Consensus 203 ~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~ 254 (261)
+.|+ ++ . +++++.++.+++| +.+++.. .+..+...+.+++|+|
T Consensus 269 ~~~s-dg-~-----~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~~~s~ 311 (347)
T 2gop_A 269 KIKD-GK-V-----YFTLFEEGSVNLY-IWDGEIK-PIAKGRHWIMGFDVDE 311 (347)
T ss_dssp EEET-TE-E-----EEEEEETTEEEEE-EESSSEE-EEECSSSEEEEEEESS
T ss_pred cEEc-Cc-E-----EEEEecCCcEEEE-EcCCceE-EEecCCCeEEeeeeeC
Confidence 8999 87 4 4667778889999 8766554 3344467788999998
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.70 E-value=1.8e-15 Score=129.00 Aligned_cols=186 Identities=12% Similarity=0.079 Sum_probs=125.1
Q ss_pred CCCCceEEEECCCCCeEEEEecCC-----cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCe-
Q 024868 62 SEGDPMTIAVNPSGDDFVCSTTNG-----GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH- 135 (261)
Q Consensus 62 ~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~- 135 (261)
|...+..++|||||++|+.+..++ .|++||+.+++....... ...+..++|+|||+.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~--------~~~~~~~~wspDg~~l~~~~~~~~~ 194 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--------RVKFSCMAWTHDGKGMFYNAYPQQD 194 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--------EECSCCEEECTTSSEEEEEECCCCS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc--------CcccceEEEEeCCCEEEEEEECCcc
Confidence 444688999999999998776543 899999988764221111 112567999999999998877655
Q ss_pred ---------------EEEEEccCceE----EeeccccCCceeEEEEcCCCCEEEEecC-----CCcEEEEEccC------
Q 024868 136 ---------------LRIMHWPSLRI----ILDEPKAHKSVLDMDFSLDSEFLATTST-----DGSARIWKTED------ 185 (261)
Q Consensus 136 ---------------i~~~d~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----d~~i~iwd~~~------ 185 (261)
|++|++.+++. +.....+...+..+.|+|||++|+..+. +..|++||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 274 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT 274 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccC
Confidence 99999987652 2122223345789999999999887654 56899999986
Q ss_pred Cc-EEEEEeecCCCceEEEEEecCCCcceEEEEEee--CCCcEEEEEECCCCeE--EeeeeccCc--CeeEEEEeeCCCE
Q 024868 186 GV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR--GDKALLAVYDISTWNK--IGHKRLLRK--PASVLSISLDGKY 258 (261)
Q Consensus 186 ~~-~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~--~~d~~i~~~d~~~~~~--~~~~~~~~~--~v~~~~~s~dg~~ 258 (261)
++ ....+..+... +.. .|+|+|+.+++ .+. ...+.|.+||+.+++. ...+..+.. .+..++|++++.+
T Consensus 275 ~~~~~~~l~~~~~~-~~~-~~s~dg~~l~~---~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 349 (710)
T 2xdw_A 275 GILKWVKLIDNFEG-EYD-YVTNEGTVFTF---KTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFL 349 (710)
T ss_dssp SSCCCEEEECSSSS-CEE-EEEEETTEEEE---EECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEE
T ss_pred CccceEEeeCCCCc-EEE-EEeccCCEEEE---EECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEE
Confidence 53 34555555443 444 58999998432 221 2245899999987641 223333332 5778899866655
Q ss_pred Ee
Q 024868 259 LA 260 (261)
Q Consensus 259 la 260 (261)
++
T Consensus 350 v~ 351 (710)
T 2xdw_A 350 VL 351 (710)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 187
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.69 E-value=2.1e-13 Score=103.87 Aligned_cols=224 Identities=6% Similarity=-0.048 Sum_probs=151.9
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
..+.++++.++ .++.++...++ .+..||+. ..+ .......+...+.++++.++|+.+++...+
T Consensus 15 ~~~~~i~~d~~---g~l~v~~~~~~--------~v~~~d~~-~~~-----~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~ 77 (299)
T 2z2n_A 15 TGPYGITVSDK---GKVWITQHKAN--------MISCINLD-GKI-----TEYPLPTPDAKVMCLTISSDGEVWFTENAA 77 (299)
T ss_dssp CCEEEEEECTT---SCEEEEETTTT--------EEEEECTT-CCE-----EEEECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred CCccceEECCC---CCEEEEecCCC--------cEEEEcCC-CCe-----EEecCCcccCceeeEEECCCCCEEEeCCCC
Confidence 45778888764 45555555556 78899987 443 122233345678999999999877776667
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee-ccccCCceeEEEEc
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMDFS 163 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s 163 (261)
+.|..|+... .. ... ........+..++++|+++++++...++.|..||. +++.... .......+..++++
T Consensus 78 ~~i~~~~~~g-~~--~~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~ 149 (299)
T 2z2n_A 78 NKIGRITKKG-II--KEY----TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLG 149 (299)
T ss_dssp TEEEEECTTS-CE--EEE----ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred CeEEEECCCC-cE--EEE----eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEc
Confidence 8899998652 21 111 11112456889999999988887777889999998 5544322 22233468999999
Q ss_pred CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee-eec
Q 024868 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRL 242 (261)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~-~~~ 242 (261)
++|+++++...++.|..||. +++............+.+++++++|+. .++...++.|.+||. +++.... ...
T Consensus 150 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l-----~v~~~~~~~i~~~~~-~g~~~~~~~~~ 222 (299)
T 2z2n_A 150 SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDAL-----WFVEIIGNKIGRITT-SGEITEFKIPT 222 (299)
T ss_dssp TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSE-----EEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCE-----EEEccCCceEEEECC-CCcEEEEECCC
Confidence 99988887777889999998 666544312222335889999999885 355556778999999 6664321 122
Q ss_pred cCcCeeEEEEeeCCCEEe
Q 024868 243 LRKPASVLSISLDGKYLA 260 (261)
Q Consensus 243 ~~~~v~~~~~s~dg~~la 260 (261)
....+.+++++++|+..+
T Consensus 223 ~~~~~~~i~~~~~g~l~v 240 (299)
T 2z2n_A 223 PNARPHAITAGAGIDLWF 240 (299)
T ss_dssp TTCCEEEEEECSTTCEEE
T ss_pred CCCCceeEEECCCCCEEE
Confidence 335788999999998654
No 188
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.69 E-value=8.1e-14 Score=115.02 Aligned_cols=203 Identities=11% Similarity=0.019 Sum_probs=143.0
Q ss_pred EEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEE
Q 024868 12 WIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFE 91 (261)
Q Consensus 12 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~ 91 (261)
|..++ ...++++...++ .+..+|..+.++ ...+. ....+..+.|+|||+++++++.++.|.+||
T Consensus 161 ~~~d~-~~~~~V~~~~~~--------~V~viD~~t~~v------~~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD 224 (567)
T 1qks_A 161 NDWDL-ENLFSVTLRDAG--------QIALIDGSTYEI------KTVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMID 224 (567)
T ss_dssp SCCCG-GGEEEEEETTTT--------EEEEEETTTCCE------EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred cccCC-CceEEEEeCCCC--------eEEEEECCCCeE------EEEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEE
Confidence 33443 245666777777 999999988765 22333 223567999999999999999999999999
Q ss_pred Ee--CCccccceeeeeCCCCCCCCCeEEEEEe----eCCcEEEEec-cCCeEEEEEccCceEEeecccc----------C
Q 024868 92 VY--GGATDINLLAKKMPPLQDAGPQKCLSFS----VDGSRFAAGG-VDGHLRIMHWPSLRIILDEPKA----------H 154 (261)
Q Consensus 92 ~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~----------~ 154 (261)
+. +.+... .+........++|+ |||+++++++ .++++.++|..+.+.+..+... .
T Consensus 225 ~~~~t~~~v~--------~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p 296 (567)
T 1qks_A 225 LWMKEPTTVA--------EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHP 296 (567)
T ss_dssp TTSSSCCEEE--------EEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEES
T ss_pred CCCCCCcEeE--------EEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccC
Confidence 95 443211 11112345789999 6999988876 5689999999888876544321 1
Q ss_pred C-ceeEEEEcCCCCE-EEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868 155 K-SVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (261)
Q Consensus 155 ~-~v~~~~~s~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~ 232 (261)
. .+..+..++++.. ++....+|.|.++|..+.+...............+.|+|+|+++ +++...++.|.++|+.
T Consensus 297 ~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~----~va~~~sn~V~ViD~~ 372 (567)
T 1qks_A 297 EPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF----ITAANARNKLVVIDTK 372 (567)
T ss_dssp CCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEE----EEEEGGGTEEEEEETT
T ss_pred CCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEE----EEEeCCCCeEEEEECC
Confidence 2 5778888887654 45556679999999987654433332333357889999999984 3455567889999999
Q ss_pred CCeEEeeeec
Q 024868 233 TWNKIGHKRL 242 (261)
Q Consensus 233 ~~~~~~~~~~ 242 (261)
+++.+.....
T Consensus 373 t~kl~~~i~v 382 (567)
T 1qks_A 373 EGKLVAIEDT 382 (567)
T ss_dssp TTEEEEEEEC
T ss_pred CCcEEEEEec
Confidence 9987765544
No 189
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.68 E-value=7.8e-15 Score=124.77 Aligned_cols=201 Identities=11% Similarity=0.059 Sum_probs=128.9
Q ss_pred EEEEEcCCCCceecCCeEEeee------cCCCCCceEEEECCCCCeEEEE-----ecCCcEEEEEEeCCccccceeeeeC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVF------DESEGDPMTIAVNPSGDDFVCS-----TTNGGCKLFEVYGGATDINLLAKKM 106 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~-----~~dg~i~i~~~~~~~~~~~~~~~~~ 106 (261)
.+|..+..++.. ...+ .+|...+..++|||||++|+.+ +.+.+|++||+.+++... .
T Consensus 95 ~l~~~~~~~~~~------~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~------~ 162 (695)
T 2bkl_A 95 ILYWRQGESGQE------KVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK------V 162 (695)
T ss_dssp EEEEEESTTSCC------EEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS------S
T ss_pred EEEEEcCCCCCc------EEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC------C
Confidence 678777654432 2122 2455578899999999999844 334689999999876420 0
Q ss_pred CCCCCCCCeEEEEEeeCCcEEEEeccCCe-------------EEEEEccCce----EEeeccccCCceeEEEEcCCCCEE
Q 024868 107 PPLQDAGPQKCLSFSVDGSRFAAGGVDGH-------------LRIMHWPSLR----IILDEPKAHKSVLDMDFSLDSEFL 169 (261)
Q Consensus 107 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------i~~~d~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l 169 (261)
..+.. .....++|+|||+.|+.++.+.. |++|++.++. .+.....+...+..+.|||||++|
T Consensus 163 ~~~~~-~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l 241 (695)
T 2bkl_A 163 DVIEG-GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYL 241 (695)
T ss_dssp CCBSC-CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCE
T ss_pred cccCc-ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEE
Confidence 01111 11267899999999999887665 9999998765 222222333468899999999999
Q ss_pred EEecCCC----cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeC---CCcEEEEEECCCCeE---Eee
Q 024868 170 ATTSTDG----SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG---DKALLAVYDISTWNK---IGH 239 (261)
Q Consensus 170 ~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~---~d~~i~~~d~~~~~~---~~~ 239 (261)
+..+.++ .|++||..+++. ..+..+.. .+....| ++|+ ++ +... .++.|.+||+.+++. ...
T Consensus 242 ~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~-~~~~~~~-~~g~-l~----~~s~~~~~~~~l~~~d~~~~~~~~~~~l 313 (695)
T 2bkl_A 242 FVYILRGWSENDVYWKRPGEKDF-RLLVKGVG-AKYEVHA-WKDR-FY----VLTDEGAPRQRVFEVDPAKPARASWKEI 313 (695)
T ss_dssp EEEEEETTTEEEEEEECTTCSSC-EEEEECSS-CCEEEEE-ETTE-EE----EEECTTCTTCEEEEEBTTBCSGGGCEEE
T ss_pred EEEEeCCCCceEEEEEcCCCCce-EEeecCCC-ceEEEEe-cCCc-EE----EEECCCCCCCEEEEEeCCCCCccCCeEE
Confidence 8877655 677777655554 34444444 3556656 6777 43 2232 468999999987652 222
Q ss_pred eecc-CcCeeEEEEeeCCCEEe
Q 024868 240 KRLL-RKPASVLSISLDGKYLA 260 (261)
Q Consensus 240 ~~~~-~~~v~~~~~s~dg~~la 260 (261)
+..+ ...+..++|+ ++.+++
T Consensus 314 ~~~~~~~~l~~~~~~-~~~lv~ 334 (695)
T 2bkl_A 314 VPEDSSASLLSVSIV-GGHLSL 334 (695)
T ss_dssp ECCCSSCEEEEEEEE-TTEEEE
T ss_pred ecCCCCCeEEEEEEE-CCEEEE
Confidence 2222 3457778887 554443
No 190
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.68 E-value=3.9e-14 Score=108.79 Aligned_cols=230 Identities=13% Similarity=0.101 Sum_probs=144.3
Q ss_pred eeEEEEEeeCCcceEEEE-------ecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC-CCeE
Q 024868 7 VTCGSWIKRPENVNLVVL-------GKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDF 78 (261)
Q Consensus 7 v~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l 78 (261)
..+++|.++ ..+.++ +..++ .|+.||+.++.+.. .......++...+.+++++++ ++.+
T Consensus 20 ~~~~~~~~~---g~l~~~~~~~~~~~~~~~--------~i~~~d~~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~g~l~ 86 (314)
T 1pjx_A 20 AEGPVFDKN---GDFYIVAPEVEVNGKPAG--------EILRIDLKTGKKTV--ICKPEVNGYGGIPAGCQCDRDANQLF 86 (314)
T ss_dssp CEEEEECTT---SCEEEEETTCEETTEECC--------EEEEECTTTCCEEE--EECCEETTEECCEEEEEECSSSSEEE
T ss_pred ccCceECCC---CCEEEEEeccccCCCCCC--------EEEEEeCCCCcEEE--EEecccCCCCCCCceEEEecCCCcEE
Confidence 467888753 456655 44556 79999977665411 000001124467899999999 7655
Q ss_pred EEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC---------------CeEEEEEccC
Q 024868 79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---------------GHLRIMHWPS 143 (261)
Q Consensus 79 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------------~~i~~~d~~~ 143 (261)
++ +..+.|.+||.. ++. ...... .........+.+++++++|+++++...+ +.|..++..
T Consensus 87 v~-~~~~~l~~~d~~-g~~-~~~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (314)
T 1pjx_A 87 VA-DMRLGLLVVQTD-GTF-EEIAKK-DSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD- 161 (314)
T ss_dssp EE-ETTTEEEEEETT-SCE-EECCSB-CTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-
T ss_pred EE-ECCCCEEEEeCC-CCE-EEEEec-cCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-
Confidence 54 444468889877 432 111000 0000112457899999999887776554 567777755
Q ss_pred ceEEeeccccCCceeEEEEc----CCCCEEEE-ecCCCcEEEEEcc-CCcE-----EEEEeecCCCceEEEEEecCCCcc
Q 024868 144 LRIILDEPKAHKSVLDMDFS----LDSEFLAT-TSTDGSARIWKTE-DGVA-----WTFLTRNSDEKIELCRFSKDGTKP 212 (261)
Q Consensus 144 ~~~~~~~~~~~~~v~~~~~s----~~~~~l~~-~~~d~~i~iwd~~-~~~~-----~~~~~~~~~~~v~~~~~~p~~~~~ 212 (261)
++.. ...........++|+ |+++.++. ...++.|.+||.. +++. ...+..+....+..++++++|+.
T Consensus 162 g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l- 239 (314)
T 1pjx_A 162 GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNL- 239 (314)
T ss_dssp SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCE-
T ss_pred CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCE-
Confidence 4432 222333456889999 99976554 4567899999987 4542 12222121034788999999985
Q ss_pred eEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 213 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
.++...++.|.+||.++++.+..+..+...+.+++|+|||+.|.
T Consensus 240 ----~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~ 283 (314)
T 1pjx_A 240 ----LVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIF 283 (314)
T ss_dssp ----EEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEE
T ss_pred ----EEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEE
Confidence 34444567899999987776655655557889999999998553
No 191
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.68 E-value=3.9e-15 Score=115.45 Aligned_cols=190 Identities=12% Similarity=0.024 Sum_probs=128.2
Q ss_pred eecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC----
Q 024868 58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---- 133 (261)
Q Consensus 58 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---- 133 (261)
.+..+...+.+++|+|+|+.++++..++.|++||..++..... . ......+.+++++|+|+++++...+
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~-~------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~ 111 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP-F------VSHKANPAAIKIHKDGRLFVCYLGDFKST 111 (333)
T ss_dssp EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE-E------ECSSSSEEEEEECTTSCEEEEECTTSSSC
T ss_pred EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE-e------eCCCCCcceEEECCCCcEEEEeCCCCCCC
Confidence 4555666789999999999777777888999999877653111 0 0124578999999999988777655
Q ss_pred CeEEEEEccCceEEeecc--ccCCceeEEEEcCCCCEEEEecC------CCcEEEEEccCCcEEEEEeecCCCceEEEEE
Q 024868 134 GHLRIMHWPSLRIILDEP--KAHKSVLDMDFSLDSEFLATTST------DGSARIWKTEDGVAWTFLTRNSDEKIELCRF 205 (261)
Q Consensus 134 ~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 205 (261)
+.|.+||..++....... .....+..+.++|+|+++++... .+.|..+|..+++...... ... .+..++|
T Consensus 112 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~-~~~~i~~ 189 (333)
T 2dg1_A 112 GGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NIS-VANGIAL 189 (333)
T ss_dssp CEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EES-SEEEEEE
T ss_pred ceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec-CCC-cccceEE
Confidence 689999987765432221 22346899999999988877654 2456666665555443322 222 4789999
Q ss_pred ecCCCcceEEEEEeeCCCcEEEEEECCC-CeEEee-----e-ecc-CcCeeEEEEeeCCCEEe
Q 024868 206 SKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGH-----K-RLL-RKPASVLSISLDGKYLA 260 (261)
Q Consensus 206 ~p~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~-----~-~~~-~~~v~~~~~s~dg~~la 260 (261)
+|+|+.++ ++...++.|++||+.+ ++.+.. . ... ...+..++++++|++.+
T Consensus 190 ~~dg~~l~----v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v 248 (333)
T 2dg1_A 190 STDEKVLW----VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYV 248 (333)
T ss_dssp CTTSSEEE----EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEE
T ss_pred CCCCCEEE----EEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEE
Confidence 99998632 4445578999999963 332211 1 111 13567899999998654
No 192
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.67 E-value=7.9e-15 Score=111.91 Aligned_cols=186 Identities=11% Similarity=-0.032 Sum_probs=127.9
Q ss_pred eecCCCCCceEEEECCCCC-eEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeE
Q 024868 58 VFDESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL 136 (261)
Q Consensus 58 ~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 136 (261)
.+..+.....+++|+|+++ .++++..++.|+.|+..++ . .. . ..+...+.+++++|+|+++++...++.|
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~-~------~~~~~~~~~l~~~~dg~l~v~~~~~~~i 92 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SP-E------MHPSHHQNGHCLNKQGHLIACSHGLRRL 92 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EE-E------ESSCSSEEEEEECTTCCEEEEETTTTEE
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EE-E------ECCCCCcceeeECCCCcEEEEecCCCeE
Confidence 3444556788999999998 6777778899999998775 2 11 1 1134568999999999988877777899
Q ss_pred EEEEccCceEEeecccc----CCceeEEEEcCCCCEEEE----ec-------------CCCcEEEEEccCCcEEEEEeec
Q 024868 137 RIMHWPSLRIILDEPKA----HKSVLDMDFSLDSEFLAT----TS-------------TDGSARIWKTEDGVAWTFLTRN 195 (261)
Q Consensus 137 ~~~d~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~----~~-------------~d~~i~iwd~~~~~~~~~~~~~ 195 (261)
.+||..+++........ ...+..++++|+|+++++ ++ ..+.|..++.. ++. ..+..+
T Consensus 93 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~ 170 (296)
T 3e5z_A 93 ERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRD 170 (296)
T ss_dssp EEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECC
T ss_pred EEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecC
Confidence 99998777653322211 124678999999998887 33 12345555544 443 334333
Q ss_pred CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC-CCeE---EeeeeccCcCeeEEEEeeCCCEEe
Q 024868 196 SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNK---IGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 196 ~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~-~~~~---~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
.. .+..++|+|+|+. +++...++.|++||+. +++. ...+......+..++++++|++.+
T Consensus 171 ~~-~~~gi~~s~dg~~-----lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v 233 (296)
T 3e5z_A 171 RV-KPNGLAFLPSGNL-----LVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWA 233 (296)
T ss_dssp CS-SEEEEEECTTSCE-----EEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEE
T ss_pred CC-CCccEEECCCCCE-----EEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEE
Confidence 33 4789999999997 4666778899999997 4544 222222345567899999998654
No 193
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.67 E-value=9.6e-13 Score=100.13 Aligned_cols=223 Identities=9% Similarity=0.017 Sum_probs=148.3
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
..+.++++.++ ..+.++...++ .++.|++.. .. ....+......+..+++.++++.+++...+
T Consensus 57 ~~~~~i~~~~~---g~l~v~~~~~~--------~i~~~~~~g-~~-----~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~ 119 (299)
T 2z2n_A 57 AKVMCLTISSD---GEVWFTENAAN--------KIGRITKKG-II-----KEYTLPNPDSAPYGITEGPNGDIWFTEMNG 119 (299)
T ss_dssp CCEEEEEECTT---SCEEEEETTTT--------EEEEECTTS-CE-----EEEECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred CceeeEEECCC---CCEEEeCCCCC--------eEEEECCCC-cE-----EEEeCCCcCCCceeeEECCCCCEEEEecCC
Confidence 34666777653 44555555556 788898763 22 122233345678999999999877776667
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee-ccccCCceeEEEEc
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMDFS 163 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s 163 (261)
+.|..||. ++... . .........+..++++++|+.+++...++.|..||. +++.... .......+..++++
T Consensus 120 ~~i~~~d~-~g~~~-~-----~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~ 191 (299)
T 2z2n_A 120 NRIGRITD-DGKIR-E-----YELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKG 191 (299)
T ss_dssp TEEEEECT-TCCEE-E-----EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred ceEEEECC-CCCEE-E-----ecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEEC
Confidence 88999987 43321 1 011112356889999999988877767789999998 6654332 22233468899999
Q ss_pred CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee-eec
Q 024868 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRL 242 (261)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~-~~~ 242 (261)
++|+++++...++.|.+||. +++............+.+++++++|+. .++...++.|..||. +++.... ...
T Consensus 192 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l-----~v~~~~~~~i~~~d~-~g~~~~~~~~~ 264 (299)
T 2z2n_A 192 NDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDL-----WFTEWGANKIGRLTS-NNIIEEYPIQI 264 (299)
T ss_dssp TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCE-----EEEETTTTEEEEEET-TTEEEEEECSS
T ss_pred CCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCE-----EEeccCCceEEEECC-CCceEEEeCCC
Confidence 99997777777889999998 666443212212235889999999985 355556788999998 4543321 123
Q ss_pred cCcCeeEEEEeeCCCEEe
Q 024868 243 LRKPASVLSISLDGKYLA 260 (261)
Q Consensus 243 ~~~~v~~~~~s~dg~~la 260 (261)
....+.++++ ++|++.+
T Consensus 265 ~~~~~~~i~~-~~g~l~v 281 (299)
T 2z2n_A 265 KSAEPHGICF-DGETIWF 281 (299)
T ss_dssp SSCCEEEEEE-CSSCEEE
T ss_pred CCCccceEEe-cCCCEEE
Confidence 3457888999 8888654
No 194
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=2e-14 Score=111.44 Aligned_cols=207 Identities=14% Similarity=0.121 Sum_probs=138.0
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeee-------cCCCCCceEEEECC-CCCe
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF-------DESEGDPMTIAVNP-SGDD 77 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~-~~~~ 77 (261)
....+++.|+ .+++++...++ .|+.|++++... ....... ..+-..+..++++| +++.
T Consensus 92 ~p~gia~d~~---g~l~v~d~~~~--------~v~~~~~~g~~~---~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~l 157 (329)
T 3fvz_A 92 LPHGLSIDTD---GNYWVTDVALH--------QVFKLDPHSKEG---PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAV 157 (329)
T ss_dssp SEEEEEECTT---SCEEEEETTTT--------EEEEECTTCSSC---CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCE
T ss_pred CceEEEECCC---CCEEEEECCCC--------EEEEEeCCCCeE---EEEEecccCCCCCCccccCCCcEEEEeCCCCeE
Confidence 4567777764 45777777777 899999876521 0111100 23445789999999 7877
Q ss_pred EEEEe-cCCcEEEEEEeCCccccceeeeeCC---CCCCCCCeEEEEEeeC-CcEEEEeccCCeEEEEEccCceEEeecc-
Q 024868 78 FVCST-TNGGCKLFEVYGGATDINLLAKKMP---PLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEP- 151 (261)
Q Consensus 78 l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~- 151 (261)
+++.+ .++.|++|+.. +............ ..........++++|+ ++++++...++.|++|+..+++.+..+.
T Consensus 158 yv~d~~~~~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~ 236 (329)
T 3fvz_A 158 FVSDGYCNSRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH 236 (329)
T ss_dssp EEEECSSCCEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred EEEeCCCCCeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec
Confidence 77765 58899999943 3321111100000 0011234789999998 7777777788999999998787765553
Q ss_pred -ccCCceeEEEEcC------CCCEEEEecCCCcEEEEEccCCcEEEEEe---ecCCCceEEEEEecCCCcceEEEEEeeC
Q 024868 152 -KAHKSVLDMDFSL------DSEFLATTSTDGSARIWKTEDGVAWTFLT---RNSDEKIELCRFSKDGTKPFLFCTVQRG 221 (261)
Q Consensus 152 -~~~~~v~~~~~s~------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~~~~~~~~~~ 221 (261)
.....+..++++| +|+..++...+..|++||..+++.+..+. .+.. .+..++++|+|.. .++..
T Consensus 237 ~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~l-----yvad~ 310 (329)
T 3fvz_A 237 ASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGTV-----YIGDA 310 (329)
T ss_dssp TTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSEE-----EEEES
T ss_pred cccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCCE-----EEEEC
Confidence 2334688999999 33333333345689999999999988874 2333 4889999999954 46777
Q ss_pred CCcEEEEEECCC
Q 024868 222 DKALLAVYDIST 233 (261)
Q Consensus 222 ~d~~i~~~d~~~ 233 (261)
.++.|++|++..
T Consensus 311 ~~~~I~~~~~~~ 322 (329)
T 3fvz_A 311 HTNTVWKFTLTE 322 (329)
T ss_dssp SSCCEEEEEEEE
T ss_pred CCCEEEEEeCCc
Confidence 888999999753
No 195
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.67 E-value=1.4e-14 Score=124.01 Aligned_cols=231 Identities=11% Similarity=-0.056 Sum_probs=141.4
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG 85 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 85 (261)
.+..++|+|+ ...++.+..++ | .....|+.+|..+++... ... +...+..++|+|| +.|+.+..++
T Consensus 164 ~~~~~~~SPD---G~~la~~~~~~--G-~e~~~i~v~dl~tg~~~~-----~~~--~~~~~~~~~wspD-~~l~~~~~~~ 229 (741)
T 1yr2_A 164 ALDAWAASDD---GRLLAYSVQDG--G-SDWRTVKFVGVADGKPLA-----DEL--KWVKFSGLAWLGN-DALLYSRFAE 229 (741)
T ss_dssp EEEEEEECTT---SSEEEEEEEET--T-CSEEEEEEEETTTCCEEE-----EEE--EEEESCCCEESTT-SEEEEEECCC
T ss_pred EEEeEEECCC---CCEEEEEEcCC--C-CceEEEEEEECCCCCCCC-----ccC--CCceeccEEEECC-CEEEEEEecC
Confidence 6778899986 44566554332 1 112379999998877411 111 1122457899999 9998887665
Q ss_pred c--------------EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC-----eEEEEEccCc--
Q 024868 86 G--------------CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-----HLRIMHWPSL-- 144 (261)
Q Consensus 86 ~--------------i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-----~i~~~d~~~~-- 144 (261)
. |++|++.+......++.. ...+...+..+.|||||++|+..+.++ .|++||+.++
T Consensus 230 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~---~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~ 306 (741)
T 1yr2_A 230 PKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA---TPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI 306 (741)
T ss_dssp C--------CCCCCEEEEEETTSCGGGCEEEEC---CTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE
T ss_pred cccccccccCCCCCEEEEEECCCCchhCEEEec---cCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC
Confidence 3 888888665432111111 111223578999999999988876543 8999999876
Q ss_pred eEEeeccccCCceeEEEEcCCCCEEEEecCC----CcEEEEEccCC-cEEEEEeecCCCceEEEEEecCCCcceEEEEEe
Q 024868 145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTD----GSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (261)
Q Consensus 145 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 219 (261)
+....+..+....... ++|+|+.|+..+.+ +.|.+||+.++ .....+..+....+..+.|+ ++.. +++
T Consensus 307 ~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~l-----v~~ 379 (741)
T 1yr2_A 307 GPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRL-----FAS 379 (741)
T ss_dssp CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEE-----EEE
T ss_pred cccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEE-----EEE
Confidence 3023333444444444 34888888877653 45999999875 23344444444456677776 3333 355
Q ss_pred eCCCcEEEEEECC-CCeEEeeeec-cCcCeeEEEEeeCCCEEe
Q 024868 220 RGDKALLAVYDIS-TWNKIGHKRL-LRKPASVLSISLDGKYLA 260 (261)
Q Consensus 220 ~~~d~~i~~~d~~-~~~~~~~~~~-~~~~v~~~~~s~dg~~la 260 (261)
...++..++|.+. +++....+.. ....+..+.++||++.|+
T Consensus 380 ~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~ 422 (741)
T 1yr2_A 380 YIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAY 422 (741)
T ss_dssp EEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEE
T ss_pred EEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEE
Confidence 5566665555443 3454444543 346788899999998665
No 196
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.67 E-value=2.7e-14 Score=110.63 Aligned_cols=206 Identities=11% Similarity=-0.036 Sum_probs=137.0
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEE
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC 117 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 117 (261)
.|..+|+.+.++.........-.........+.+. +++.+++...++.|.+||..+.+....+ ........
T Consensus 18 ~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i--------~~~~~p~~ 88 (328)
T 3dsm_A 18 TLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI--------TGFTSPRY 88 (328)
T ss_dssp EEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE--------ECCSSEEE
T ss_pred eEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc--------CCCCCCcE
Confidence 78888998877522100000000112345677774 3444455556789999999887652221 22356789
Q ss_pred EEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC-----CceeEEEEcCCCCEEEEec-CCCcEEEEEccCCcEEEE
Q 024868 118 LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-----KSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTF 191 (261)
Q Consensus 118 ~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~~~~~ 191 (261)
++++++++.+++...++.|.+||..+++....+.... .....+++ .+++.+++.. .++.|.++|..+++.+..
T Consensus 89 i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~ 167 (328)
T 3dsm_A 89 IHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDE 167 (328)
T ss_dssp EEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEE
T ss_pred EEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEE
Confidence 9999999555554478999999999888655443322 14566777 4444444443 488999999999998887
Q ss_pred EeecCCCceEEEEEecCCCcceEEEEEeeCCC----------cEEEEEECCCCeEEeeeecc-CcCeeEEEEeeCCCEEe
Q 024868 192 LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK----------ALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGKYLA 260 (261)
Q Consensus 192 ~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d----------~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~s~dg~~la 260 (261)
+.... ....++++|+|+. .++...+ +.|.++|..+++....+... ......++|+||+++|.
T Consensus 168 i~~g~--~p~~i~~~~dG~l-----~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~ly 240 (328)
T 3dsm_A 168 LTIGI--QPTSLVMDKYNKM-----WTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLY 240 (328)
T ss_dssp EECSS--CBCCCEECTTSEE-----EEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEE
T ss_pred EEcCC--CccceEEcCCCCE-----EEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEE
Confidence 76432 3678899999985 2444333 78999999998877655532 34678999999998775
No 197
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.66 E-value=1.6e-13 Score=106.22 Aligned_cols=221 Identities=11% Similarity=0.001 Sum_probs=141.7
Q ss_pred eEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcE
Q 024868 8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGC 87 (261)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 87 (261)
.+.+|+|+ ...+++++..++ .|+.||+.++.. . .+. ....+.+++++|+|+++++. .++ |
T Consensus 52 egp~~~~~--~~~l~~~d~~~~--------~i~~~d~~~~~~------~-~~~-~~~~v~~i~~~~dg~l~v~~-~~g-l 111 (326)
T 2ghs_A 52 EGPTFDPA--SGTAWWFNILER--------ELHELHLASGRK------T-VHA-LPFMGSALAKISDSKQLIAS-DDG-L 111 (326)
T ss_dssp EEEEEETT--TTEEEEEEGGGT--------EEEEEETTTTEE------E-EEE-CSSCEEEEEEEETTEEEEEE-TTE-E
T ss_pred cCCeEeCC--CCEEEEEECCCC--------EEEEEECCCCcE------E-EEE-CCCcceEEEEeCCCeEEEEE-CCC-E
Confidence 45678764 356677776667 899999887653 1 121 23578999999999877654 444 8
Q ss_pred EEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc------CCeEEEEEccCceEEeeccccCCceeEEE
Q 024868 88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV------DGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (261)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~v~~~~ 161 (261)
++||..++... .+. . .........+.+++++|+|+++++... .+.|+.++ +++.. .+.........++
T Consensus 112 ~~~d~~~g~~~-~~~-~-~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~ 185 (326)
T 2ghs_A 112 FLRDTATGVLT-LHA-E-LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSIC 185 (326)
T ss_dssp EEEETTTCCEE-EEE-C-SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEE
T ss_pred EEEECCCCcEE-EEe-e-CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeE
Confidence 99998766531 111 0 000011245789999999987665432 24566666 44432 2222233567899
Q ss_pred EcCCCCEEEEe-cCCCcEEEEEcc--CC-cEE--EEEee--cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868 162 FSLDSEFLATT-STDGSARIWKTE--DG-VAW--TFLTR--NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (261)
Q Consensus 162 ~s~~~~~l~~~-~~d~~i~iwd~~--~~-~~~--~~~~~--~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~ 233 (261)
|+||++.++.+ +.++.|.+||+. ++ +.. ..+.. .....+..++++++|.. .++...++.|..||. +
T Consensus 186 ~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~l-----wva~~~~~~v~~~d~-~ 259 (326)
T 2ghs_A 186 FSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI-----WNARWGEGAVDRYDT-D 259 (326)
T ss_dssp ECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE-----EEEEETTTEEEEECT-T
T ss_pred EcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCE-----EEEEeCCCEEEEECC-C
Confidence 99999876554 557899999986 55 321 12211 11234778999999975 233434568999998 5
Q ss_pred CeEEeeeeccCcCeeEEEEe-eCCCEEe
Q 024868 234 WNKIGHKRLLRKPASVLSIS-LDGKYLA 260 (261)
Q Consensus 234 ~~~~~~~~~~~~~v~~~~~s-~dg~~la 260 (261)
++.+..+......+.+++|+ ||++.|.
T Consensus 260 g~~~~~i~~~~~~~~~~af~g~d~~~L~ 287 (326)
T 2ghs_A 260 GNHIARYEVPGKQTTCPAFIGPDASRLL 287 (326)
T ss_dssp CCEEEEEECSCSBEEEEEEESTTSCEEE
T ss_pred CCEEEEEECCCCCcEEEEEecCCCCEEE
Confidence 66666666666678999999 8887664
No 198
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.65 E-value=5e-14 Score=105.85 Aligned_cols=200 Identities=8% Similarity=0.002 Sum_probs=135.4
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG 85 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 85 (261)
.+.++++.++ .++.++.. ++ .|+.||+.+... ..........+..++++++|+.+++...++
T Consensus 68 ~p~~i~~~~~---g~l~v~~~-~~--------~i~~~d~~~~~~------~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~ 129 (270)
T 1rwi_B 68 QPQGLAVDGA---GTVYVTDF-NN--------RVVTLAAGSNNQ------TVLPFDGLNYPEGLAVDTQGAVYVADRGNN 129 (270)
T ss_dssp SCCCEEECTT---CCEEEEET-TT--------EEEEECTTCSCC------EECCCCSCSSEEEEEECTTCCEEEEEGGGT
T ss_pred CcceeEECCC---CCEEEEcC-CC--------EEEEEeCCCceE------eeeecCCcCCCcceEECCCCCEEEEECCCC
Confidence 4556777653 34555544 55 788899876543 111112235688999999998777766678
Q ss_pred cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCC
Q 024868 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD 165 (261)
Q Consensus 86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~ 165 (261)
.|.+|+..+... . .........+.+++++|+|+++++...++.|.+||................+..++++++
T Consensus 130 ~i~~~~~~~~~~--~-----~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~ 202 (270)
T 1rwi_B 130 RVVKLAAGSKTQ--T-----VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA 202 (270)
T ss_dssp EEEEECTTCCSC--E-----ECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTT
T ss_pred EEEEEECCCcee--E-----eeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCC
Confidence 899986433321 0 011112245678999999997777767889999998766554333333356889999999
Q ss_pred CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868 166 SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (261)
Q Consensus 166 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~ 236 (261)
|+++++...++.|.+||........ ........+.+++++|+|+. .++...++.|++|++...+.
T Consensus 203 g~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~l-----~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 203 GTVYVTEHNTNQVVKLLAGSTTSTV-LPFTGLNTPLAVAVDSDRTV-----YVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CCEEEEETTTSCEEEECTTCSCCEE-CCCCSCSCEEEEEECTTCCE-----EEEEGGGTEEEEECCCGGGS
T ss_pred CCEEEEECCCCcEEEEcCCCCccee-eccCCCCCceeEEECCCCCE-----EEEECCCCEEEEEcCCCccc
Confidence 9877877778899999987654432 22222235889999999975 46777889999999876543
No 199
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.65 E-value=5.1e-13 Score=106.41 Aligned_cols=225 Identities=9% Similarity=-0.010 Sum_probs=145.3
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG 85 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 85 (261)
....++|.++ .+++++...++ .|+.||+.++.+ ...... ..... ++|+|+++.|+++..++
T Consensus 132 ~P~~la~d~~---g~lyv~d~~~~--------~I~~id~~~g~~------~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~ 192 (409)
T 3hrp_A 132 YMWGIAAVGN---NTVLAYQRDDP--------RVRLISVDDNKV------TTVHPG-FKGGK-PAVTKDKQRVYSIGWEG 192 (409)
T ss_dssp CEEEEEECST---TEEEEEETTTT--------EEEEEETTTTEE------EEEEET-CCBCB-CEECTTSSEEEEEBSST
T ss_pred CceEEEEeCC---CCEEEEecCCC--------cEEEEECCCCEE------EEeecc-CCCCc-eeEecCCCcEEEEecCC
Confidence 4567888764 45777766666 899999987664 222222 23344 99999999988887765
Q ss_pred --cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee----ccccCCce-e
Q 024868 86 --GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD----EPKAHKSV-L 158 (261)
Q Consensus 86 --~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~----~~~~~~~v-~ 158 (261)
.|.+++......... ... . .......+.+++++|++..|+++..++.|+.||..++..... .......- .
T Consensus 193 ~~~I~~~d~~~~~~~~~-~g~-~-~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~ 269 (409)
T 3hrp_A 193 THTVYVYMKASGWAPTR-IGQ-L-GSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPG 269 (409)
T ss_dssp TCEEEEEEGGGTTCEEE-EEE-C-CTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSC
T ss_pred CceEEEEEcCCCceeEE-eee-c-cchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCcc
Confidence 677777765442111 100 0 011235567899999544455566788999999877654322 11222222 3
Q ss_pred -EEEEcCC-CCEEEEecCCCcEEEEEccCCcEEEEEeecC--------------CCceEEEEEecCCCcceEEEEEeeC-
Q 024868 159 -DMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNS--------------DEKIELCRFSKDGTKPFLFCTVQRG- 221 (261)
Q Consensus 159 -~~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------------~~~v~~~~~~p~~~~~~~~~~~~~~- 221 (261)
.++|+|+ +.++++-..++.|+.|+.... +..+.... -.....++++|+|+. .++..
T Consensus 270 ~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~l-----yvad~~ 342 (409)
T 3hrp_A 270 PYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNF-----YIVDGF 342 (409)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCE-----EEEETT
T ss_pred ccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCE-----EEEeCC
Confidence 9999995 666666667889999987643 33333321 123789999999985 35666
Q ss_pred CCcEEEEEECCCCeEEeeeecc---------------CcCeeEEEEeeCCCEEe
Q 024868 222 DKALLAVYDISTWNKIGHKRLL---------------RKPASVLSISLDGKYLA 260 (261)
Q Consensus 222 ~d~~i~~~d~~~~~~~~~~~~~---------------~~~v~~~~~s~dg~~la 260 (261)
.++.|+.||+.+++.. .+... -.....++++++|++++
T Consensus 343 ~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyV 395 (409)
T 3hrp_A 343 KGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWI 395 (409)
T ss_dssp TTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEE
T ss_pred CCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEE
Confidence 7889999998877653 33332 13578899999987654
No 200
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.64 E-value=2.8e-13 Score=103.85 Aligned_cols=222 Identities=14% Similarity=0.079 Sum_probs=142.7
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG 85 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 85 (261)
.....+|.|+ +..+++++..++ .++.|++.. .. ..+..+...+..++++++|+.+++...++
T Consensus 46 ~~egp~~~~~--g~~l~~~d~~~~--------~i~~~~~~g-~~-------~~~~~~~~~~~gl~~d~dG~l~v~~~~~~ 107 (305)
T 3dr2_A 46 WSEGPAWWEA--QRTLVWSDLVGR--------RVLGWREDG-TV-------DVLLDATAFTNGNAVDAQQRLVHCEHGRR 107 (305)
T ss_dssp SEEEEEEEGG--GTEEEEEETTTT--------EEEEEETTS-CE-------EEEEESCSCEEEEEECTTSCEEEEETTTT
T ss_pred CccCCeEeCC--CCEEEEEECCCC--------EEEEEeCCC-CE-------EEEeCCCCccceeeECCCCCEEEEECCCC
Confidence 3456778875 345777777777 889998743 32 12334556789999999999666655557
Q ss_pred cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEE----ecc-------------CCeEEEEEccCceEEe
Q 024868 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA----GGV-------------DGHLRIMHWPSLRIIL 148 (261)
Q Consensus 86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~----~~~-------------d~~i~~~d~~~~~~~~ 148 (261)
.|.+|+.. +.. ..+.... .-.....+.+++++|+|++.++ +.. .+.|+.+|..+++...
T Consensus 108 ~v~~~~~~-g~~-~~~~~~~--~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~ 183 (305)
T 3dr2_A 108 AITRSDAD-GQA-HLLVGRY--AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR 183 (305)
T ss_dssp EEEEECTT-SCE-EEEECEE--TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE
T ss_pred EEEEECCC-CCE-EEEEecc--CCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE
Confidence 79998875 322 1111110 0011245678999999998876 331 2467778876665433
Q ss_pred eccccCCceeEEEEcCCCCEEEEecCC------CcEEEEEccCCcEE--EEEeecCCCceEEEEEecCCCcceEEEEEee
Q 024868 149 DEPKAHKSVLDMDFSLDSEFLATTSTD------GSARIWKTEDGVAW--TFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (261)
Q Consensus 149 ~~~~~~~~v~~~~~s~~~~~l~~~~~d------~~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~ 220 (261)
.. .......++|+||++.|+.+... +.|++|++..+... ..+.......+..++++++|+. ..+
T Consensus 184 ~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l------wv~ 255 (305)
T 3dr2_A 184 MA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL------WSS 255 (305)
T ss_dssp EE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE------EEC
T ss_pred Ee--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE------EEe
Confidence 22 33456789999999977776554 68999998765421 1121111223567899999995 333
Q ss_pred CCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 221 ~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
..+ .|.+||. .++.+..+.... .+..++|+|+++.|.
T Consensus 256 ~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~ 292 (305)
T 3dr2_A 256 SGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLF 292 (305)
T ss_dssp CSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEE
T ss_pred cCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEE
Confidence 344 4999998 466666665544 588999999988664
No 201
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.63 E-value=5e-12 Score=96.19 Aligned_cols=224 Identities=9% Similarity=-0.020 Sum_probs=149.1
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
..+.++++.++ ..+.++...++ .|..+|+. ..+. ...+..+...+.++++.++++.+++...+
T Consensus 20 ~~p~~i~~d~~---g~l~v~~~~~~--------~v~~~~~~-~~~~-----~~~~~~~~~~~~~i~~~~~g~l~v~~~~~ 82 (300)
T 2qc5_A 20 SGPYGITSSED---GKVWFTQHKAN--------KISSLDQS-GRIK-----EFEVPTPDAKVMCLIVSSLGDIWFTENGA 82 (300)
T ss_dssp CCEEEEEECTT---SCEEEEETTTT--------EEEEECTT-SCEE-----EEECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred CCcceeeECCC---CCEEEEcCCCC--------eEEEECCC-CceE-----EEECCCCCCcceeEEECCCCCEEEEecCC
Confidence 35566777653 44666555566 88889887 4431 22233444678999999999877766557
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee-ccccCCceeEEEEc
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMDFS 163 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s 163 (261)
+.|..||.. +.. ... ........+.+++++++|+++++...++.|..+|.. ++.... .......+..++++
T Consensus 83 ~~v~~~d~~-g~~-~~~-----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d 154 (300)
T 2qc5_A 83 NKIGKLSKK-GGF-TEY-----PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLG 154 (300)
T ss_dssp TEEEEECTT-SCE-EEE-----ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEEC
T ss_pred CeEEEECCC-CCe-EEe-----cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEEC
Confidence 889998876 332 111 111123568899999999888877668889999976 554322 22233468999999
Q ss_pred CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee-eec
Q 024868 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRL 242 (261)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~-~~~ 242 (261)
++|+++++...++.|..+|. +++............+..++++++|+. .++....+.|.+||. +++.... ...
T Consensus 155 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l-----~v~~~~~~~i~~~~~-~g~~~~~~~~~ 227 (300)
T 2qc5_A 155 SDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGAL-----WFVEIMGNKIGRITT-TGEISEYDIPT 227 (300)
T ss_dssp TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSE-----EEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred CCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCE-----EEEccCCCEEEEEcC-CCcEEEEECCC
Confidence 99997777766788999998 566543222122235889999999875 355556678999998 4554322 222
Q ss_pred cCcCeeEEEEeeCCCEEe
Q 024868 243 LRKPASVLSISLDGKYLA 260 (261)
Q Consensus 243 ~~~~v~~~~~s~dg~~la 260 (261)
....+.+++++++|+..+
T Consensus 228 ~~~~~~~i~~d~~g~l~v 245 (300)
T 2qc5_A 228 PNARPHAITAGKNSEIWF 245 (300)
T ss_dssp TTCCEEEEEECSTTCEEE
T ss_pred CCCCceEEEECCCCCEEE
Confidence 345678999999988554
No 202
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.61 E-value=6.3e-12 Score=95.65 Aligned_cols=224 Identities=8% Similarity=0.028 Sum_probs=146.7
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
..+.++++.++ ..+.++...++ .|+.+|+. +.. ....+......+.++++.++|+.+++...+
T Consensus 62 ~~~~~i~~~~~---g~l~v~~~~~~--------~v~~~d~~-g~~-----~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~ 124 (300)
T 2qc5_A 62 AKVMCLIVSSL---GDIWFTENGAN--------KIGKLSKK-GGF-----TEYPLPQPDSGPYGITEGLNGDIWFTQLNG 124 (300)
T ss_dssp CCEEEEEECTT---SCEEEEETTTT--------EEEEECTT-SCE-----EEEECSSTTCCEEEEEECSTTCEEEEETTT
T ss_pred CcceeEEECCC---CCEEEEecCCC--------eEEEECCC-CCe-----EEecCCCCCCCCccceECCCCCEEEEccCC
Confidence 34566666543 44555555456 78889887 442 122333344678999999999877776657
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee-ccccCCceeEEEEc
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMDFS 163 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s 163 (261)
+.|..++.. +... .. ........+..+++++++++.++...++.|..+|. +++.... .......+..++++
T Consensus 125 ~~i~~~~~~-g~~~-~~-----~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d 196 (300)
T 2qc5_A 125 DRIGKLTAD-GTIY-EY-----DLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSG 196 (300)
T ss_dssp TEEEEECTT-SCEE-EE-----ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred CeEEEECCC-CCEE-Ec-----cCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEEC
Confidence 788888876 3321 10 01112356789999999997766666788999997 5544322 22233468899999
Q ss_pred CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee-eec
Q 024868 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRL 242 (261)
Q Consensus 164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~-~~~ 242 (261)
++|++.++....+.|.+||. +++............+.+++++++|+. .++...++.|..||. +++.... ...
T Consensus 197 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l-----~v~~~~~~~i~~~~~-~g~~~~~~~~~ 269 (300)
T 2qc5_A 197 NDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEI-----WFTEWGANQIGRITN-DNTIQEYQLQT 269 (300)
T ss_dssp TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCE-----EEEETTTTEEEEECT-TSCEEEEECCS
T ss_pred CCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCE-----EEeccCCCeEEEECC-CCcEEEEECCc
Confidence 99987777777788999998 555443322222335889999999985 355556788999998 4543321 222
Q ss_pred cCcCeeEEEEeeCCCEEe
Q 024868 243 LRKPASVLSISLDGKYLA 260 (261)
Q Consensus 243 ~~~~v~~~~~s~dg~~la 260 (261)
....+.+++++++|+..+
T Consensus 270 ~~~~~~~i~~~~~g~l~v 287 (300)
T 2qc5_A 270 ENAEPHGITFGKDGSVWF 287 (300)
T ss_dssp TTCCCCCEEECTTSCEEE
T ss_pred cCCccceeEeCCCCCEEE
Confidence 345678999999998654
No 203
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.60 E-value=3.2e-14 Score=111.60 Aligned_cols=109 Identities=11% Similarity=0.037 Sum_probs=77.7
Q ss_pred CCCeEEEEe------cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec----------cCCeEE
Q 024868 74 SGDDFVCST------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG----------VDGHLR 137 (261)
Q Consensus 74 ~~~~l~~~~------~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~d~~i~ 137 (261)
+++++++.. .|+.|++||..+++....+ . .+..+ .++|+|||+++++++ .++.|.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i-----~--~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~ 84 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMV-----P--TAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVE 84 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEE-----E--CCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEE
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEe-----c--CCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEE
Confidence 566666543 3678999998776542111 1 11222 899999999999886 256799
Q ss_pred EEEccCceEEeecccc------CCceeEEEEcCCCCEEEEecC--CCcEEEEEccCCcEEEE
Q 024868 138 IMHWPSLRIILDEPKA------HKSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTF 191 (261)
Q Consensus 138 ~~d~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~--d~~i~iwd~~~~~~~~~ 191 (261)
+||..+.+.+..+... ......++++|||++|+++.. ++.|.+||+.+++.+..
T Consensus 85 v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~ 146 (361)
T 2oiz_A 85 VWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED 146 (361)
T ss_dssp EEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred EEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence 9999888776554322 234678999999999998763 57899999988776655
No 204
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.60 E-value=1.6e-12 Score=107.39 Aligned_cols=234 Identities=8% Similarity=0.022 Sum_probs=151.1
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCC--CCceecCCeEEeeecCCCCCceEEEEC----CCCCeEE
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPK--TTSVYTSPLVTYVFDESEGDPMTIAVN----PSGDDFV 79 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~ 79 (261)
.+..++++|+ ..++.+++.++ .|..||.. +.+. ...+.. ......++|+ |||++++
T Consensus 198 ~p~~v~~SpD---Gr~lyv~~~dg--------~V~viD~~~~t~~~------v~~i~~-G~~P~~ia~s~~~~pDGk~l~ 259 (567)
T 1qks_A 198 AVHISRLSAS---GRYLFVIGRDG--------KVNMIDLWMKEPTT------VAEIKI-GSEARSIETSKMEGWEDKYAI 259 (567)
T ss_dssp CEEEEEECTT---SCEEEEEETTS--------EEEEEETTSSSCCE------EEEEEC-CSEEEEEEECCSTTCTTTEEE
T ss_pred CccceEECCC---CCEEEEEcCCC--------eEEEEECCCCCCcE------eEEEec-CCCCceeEEccccCCCCCEEE
Confidence 4567888885 44555566677 88999985 4432 223332 2346799999 6999988
Q ss_pred EEec-CCcEEEEEEeCCccccceeeeeCCC----CCCCCCeEEEEEeeCCcE-EEEeccCCeEEEEEccCceEEe-eccc
Q 024868 80 CSTT-NGGCKLFEVYGGATDINLLAKKMPP----LQDAGPQKCLSFSVDGSR-FAAGGVDGHLRIMHWPSLRIIL-DEPK 152 (261)
Q Consensus 80 ~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~-l~~~~~d~~i~~~d~~~~~~~~-~~~~ 152 (261)
+++. ++++.++|..+.+............ ......+..+..++++.. ++....+|.|.++|..+.+... ....
T Consensus 260 v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~ 339 (567)
T 1qks_A 260 AGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS 339 (567)
T ss_dssp EEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE
T ss_pred EEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee
Confidence 7766 4899999987765432221111000 011236788888987654 4455577999999987654221 1122
Q ss_pred cCCceeEEEEcCCCCEEEEec-CCCcEEEEEccCCcEEEEEee-cCC-CceEEEE-EecCCCcceEEEEEeeCCCcEEEE
Q 024868 153 AHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLTR-NSD-EKIELCR-FSKDGTKPFLFCTVQRGDKALLAV 228 (261)
Q Consensus 153 ~~~~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~-~~~-~~v~~~~-~~p~~~~~~~~~~~~~~~d~~i~~ 228 (261)
......++.|+|+|++++++. .++.|.++|+.+++.+..+.. ... .+-+.+. ++|++..++ +...-.++.|.+
T Consensus 340 ~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~---~t~~~g~~~Vsv 416 (567)
T 1qks_A 340 AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVW---ATSHMGDDSVAL 416 (567)
T ss_dssp CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEE---EEEBSSSSEEEE
T ss_pred ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEE---EeCCCCCCeEEE
Confidence 233577899999999887655 578999999999998877764 211 1112233 588866532 122335678999
Q ss_pred EECCC-------CeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 229 YDIST-------WNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 229 ~d~~~-------~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
+|..+ ++.+..+......-..+..+||+++|.
T Consensus 417 id~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~ 455 (567)
T 1qks_A 417 IGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY 455 (567)
T ss_dssp EECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEE
T ss_pred ecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEE
Confidence 99987 677777665544445688999999875
No 205
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.58 E-value=9.1e-12 Score=97.93 Aligned_cols=207 Identities=8% Similarity=-0.007 Sum_probs=120.0
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe----------cCCcEEEEEEeCCccccceeeeeCC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLAKKMP 107 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~i~~~~~~~~~~~~~~~~~~ 107 (261)
.+..+|..+.++ ...++.... . .++++|||++++++. .++.|.+||..+.+...........
T Consensus 48 ~v~v~D~~t~~~------~~~i~~g~~-p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~ 119 (373)
T 2mad_H 48 QQWVLDAGSGSI------LGHVNGGFL-P-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAP 119 (373)
T ss_pred EEEEEECCCCeE------EEEecCCCC-C-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcc
Confidence 678889887764 223332222 3 899999999998876 2577999999876542221110000
Q ss_pred CCCCCCCeEEEEEeeCCcEEEEecc--CCeEEEEEccCceEEee-ccccCCceeEEEEcCCC-CEEEEecCCC-------
Q 024868 108 PLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILD-EPKAHKSVLDMDFSLDS-EFLATTSTDG------- 176 (261)
Q Consensus 108 ~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s~~~-~~l~~~~~d~------- 176 (261)
..........+.|+|||++|++++. ++.|.++| .+++.+.. +... .. +.+.|++ +.+++.+.||
T Consensus 120 ~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~~---~~~~~~~~~~~~~~~~dg~~~~vd~ 194 (373)
T 2mad_H 120 RFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-TC---YHIHPGAPSTFYLLCAQGGLAKTDH 194 (373)
T ss_pred ccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-ce---EEEEeCCCceEEEEcCCCCEEEEEC
Confidence 0001123457999999999998864 47899999 98887655 4321 11 1222222 1222223333
Q ss_pred ----------------------------------------cEEEEEccCCc--EEEEEeecC---------CCceEEEEE
Q 024868 177 ----------------------------------------SARIWKTEDGV--AWTFLTRNS---------DEKIELCRF 205 (261)
Q Consensus 177 ----------------------------------------~i~iwd~~~~~--~~~~~~~~~---------~~~v~~~~~ 205 (261)
.+.+.|+.++. .+..+.... ......+.+
T Consensus 195 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~ 274 (373)
T 2mad_H 195 AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAY 274 (373)
T ss_pred CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEE
Confidence 34444443221 111111000 011233678
Q ss_pred ecCCCcceEEEEEeeC-------CCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCC-EEe
Q 024868 206 SKDGTKPFLFCTVQRG-------DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK-YLA 260 (261)
Q Consensus 206 ~p~~~~~~~~~~~~~~-------~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~-~la 260 (261)
+|+++.+|+. .... ..+.|.++|+.+++.+..+.. ......++|+|||+ .++
T Consensus 275 s~d~~~lyV~--~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~ 334 (373)
T 2mad_H 275 LKSSDGIYLL--TSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLY 334 (373)
T ss_pred CCCCCEEEEE--eccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEE
Confidence 8888874421 1111 246899999999998877753 34678999999999 443
No 206
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.57 E-value=7.8e-14 Score=109.16 Aligned_cols=174 Identities=10% Similarity=-0.023 Sum_probs=120.4
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCc--e-----ecCCeEEeeecCCCCCceEEEECCCCCe
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS--V-----YTSPLVTYVFDESEGDPMTIAVNPSGDD 77 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~--~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 77 (261)
.++..+++++. ..++++|+.++ +..|+.+... . ...+... ..+.. |+.++| |+++
T Consensus 38 ~~~nlLais~~---~gll~a~~~~~---------l~v~~~~~l~~~~~~~~~~~~~~~~---~~lp~-V~~l~f--d~~~ 99 (388)
T 1xip_A 38 ASLQNLDISNS---KSLFVAASGSK---------AVVGELQLLRDHITSDSTPLTFKWE---KEIPD-VIFVCF--HGDQ 99 (388)
T ss_dssp SCCBCEEEETT---TTEEEEEETTE---------EEEEEHHHHHHHHHSSSCCCCCSEE---EECTT-EEEEEE--ETTE
T ss_pred ccccEEEEcCC---CCEEEEeCCCE---------EEEEEhhHhhhhhccccccccceEE---eeCCC-eeEEEE--CCCE
Confidence 36888889885 45677776655 3335433221 0 0122222 23455 999999 9999
Q ss_pred EEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCce
Q 024868 78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV 157 (261)
Q Consensus 78 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v 157 (261)
|+++ .++.|++||+.+....... ..+..++.++.+.+. .+++++.||.+.+||+.++.... ....|
T Consensus 100 L~v~-~~~~l~v~dv~sl~~~~~~-------~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~V 165 (388)
T 1xip_A 100 VLVS-TRNALYSLDLEELSEFRTV-------TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNV 165 (388)
T ss_dssp EEEE-ESSEEEEEESSSTTCEEEE-------EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESE
T ss_pred EEEE-cCCcEEEEEchhhhccCcc-------ceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCc
Confidence 9998 8899999999876532211 112345777776654 38888899999999998776542 33579
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEEccCCcE--EEEEee--------cCCCceEEEEEecCCCcc
Q 024868 158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVA--WTFLTR--------NSDEKIELCRFSKDGTKP 212 (261)
Q Consensus 158 ~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~--------~~~~~v~~~~~~p~~~~~ 212 (261)
.+++|||+| ++.+..||.+++|+...++. ..++.. .+...|.++.|.++++++
T Consensus 166 s~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~fl 228 (388)
T 1xip_A 166 TSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFL 228 (388)
T ss_dssp EEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEE
T ss_pred eEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEE
Confidence 999999999 67788899999999887775 555621 124579999999988874
No 207
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.55 E-value=2.8e-13 Score=102.20 Aligned_cols=170 Identities=7% Similarity=-0.044 Sum_probs=127.9
Q ss_pred CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecccc
Q 024868 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153 (261)
Q Consensus 74 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 153 (261)
.++.|++++.++.|++||.++++...+... .....+.++.++|+|+++++ .++.|..||. +++.+..+..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~------~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~ 74 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPL------EKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAP 74 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEEC------CTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCC------CccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCC
Confidence 457888999999999999978875333221 11135788999999998883 4778999998 88888777654
Q ss_pred C-CceeEEEEcCCCCEEEEecC-CCcEEEEEccCCcEEEEEeecCC-----CceEEEEEecCCCcceEEEEEeeCCCcEE
Q 024868 154 H-KSVLDMDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTRNSD-----EKIELCRFSKDGTKPFLFCTVQRGDKALL 226 (261)
Q Consensus 154 ~-~~v~~~~~s~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~-----~~v~~~~~~p~~~~~~~~~~~~~~~d~~i 226 (261)
. ..+.++.+.|+|+++++.+. ++.+..+|. +|+.+..+..... .....+++.++|++ +++...++.|
T Consensus 75 ~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~-----lv~~~~~~~v 148 (276)
T 3no2_A 75 AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNY-----LVPLFATSEV 148 (276)
T ss_dssp TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCE-----EEEETTTTEE
T ss_pred CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCE-----EEEecCCCEE
Confidence 3 46889999999999998877 778888885 7887777653211 13556678999997 5778889999
Q ss_pred EEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 227 AVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 227 ~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
..||.. |+.+..+... ..+.++.+.++|+.++
T Consensus 149 ~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v 180 (276)
T 3no2_A 149 REIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLV 180 (276)
T ss_dssp EEECTT-SCEEEEEECS-SCCCEEEECTTSCEEE
T ss_pred EEECCC-CCEEEEEECC-CCccceeEcCCCCEEE
Confidence 999998 8888766544 4456677788888765
No 208
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.55 E-value=5.6e-12 Score=99.27 Aligned_cols=225 Identities=16% Similarity=0.149 Sum_probs=142.3
Q ss_pred cceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeec------C-CCCCceEEEECCCCCeEEEEecC------
Q 024868 18 NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD------E-SEGDPMTIAVNPSGDDFVCSTTN------ 84 (261)
Q Consensus 18 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~-~~~~v~~~~~~~~~~~l~~~~~d------ 84 (261)
...+++.|..++ +|+++|..+... .+.....+. . .......+..+|+| .++++..+
T Consensus 95 r~~l~v~~l~s~--------~I~viD~~t~p~--~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~ 163 (462)
T 2ece_A 95 RRFLIVPGLRSS--------RIYIIDTKPNPR--EPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGP 163 (462)
T ss_dssp SCEEEEEBTTTC--------CEEEEECCSCTT--SCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSC
T ss_pred CCEEEEccCCCC--------eEEEEECCCCCC--CceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCC
Confidence 466677777776 889998754321 122232331 1 11246678899999 66665554
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-------------------cCCeEEEEEccCce
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-------------------VDGHLRIMHWPSLR 145 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------------------~d~~i~~~d~~~~~ 145 (261)
|.+.++|..+.+...+.... ......-+.+.|+|+++.+++.. ...+|.+||+.+++
T Consensus 164 g~v~vlD~~T~~v~~~~~~~----~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k 239 (462)
T 2ece_A 164 GGILMLDHYSFEPLGKWEID----RGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK 239 (462)
T ss_dssp CEEEEECTTTCCEEEECCSB----CTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE
T ss_pred CeEEEEECCCCeEEEEEccC----CCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc
Confidence 68999999887753222111 01112335688999999888874 36789999999887
Q ss_pred EEeecccc-C-CceeEEEE--cCCCCEEEEec------CCCcEEEEEccCCcE--EEEE--eec--C-------------
Q 024868 146 IILDEPKA-H-KSVLDMDF--SLDSEFLATTS------TDGSARIWKTEDGVA--WTFL--TRN--S------------- 196 (261)
Q Consensus 146 ~~~~~~~~-~-~~v~~~~~--s~~~~~l~~~~------~d~~i~iwd~~~~~~--~~~~--~~~--~------------- 196 (261)
.+..+... . .....+.| +|++++++.++ .+++|.+|..+.++. .+.+ ... .
T Consensus 240 ~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~ 319 (462)
T 2ece_A 240 RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV 319 (462)
T ss_dssp EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence 66555432 1 23556656 99999888766 456888877665432 1111 110 0
Q ss_pred CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC---CeEEeeeeccC--------------cCeeEEEEeeCCCEE
Q 024868 197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST---WNKIGHKRLLR--------------KPASVLSISLDGKYL 259 (261)
Q Consensus 197 ~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~---~~~~~~~~~~~--------------~~v~~~~~s~dg~~l 259 (261)
......+.+||||+++| ++.-..+.|.+||+.. .+.+..+...+ +....++++|||++|
T Consensus 320 ~~~pa~I~lS~DGrfLY----VSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~L 395 (462)
T 2ece_A 320 PPLVTDIDISLDDKFLY----LSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRV 395 (462)
T ss_dssp CCCCCCEEECTTSCEEE----EEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEE
T ss_pred CCceeEEEECCCCCEEE----EEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEE
Confidence 12367899999999854 4555567999999852 34554444321 136889999999988
Q ss_pred eC
Q 024868 260 AM 261 (261)
Q Consensus 260 a~ 261 (261)
.+
T Consensus 396 yV 397 (462)
T 2ece_A 396 YV 397 (462)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 209
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.55 E-value=7.2e-13 Score=105.08 Aligned_cols=203 Identities=11% Similarity=0.036 Sum_probs=131.1
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe----------cCCcEEEEEEeCCccccceeeeeCC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLAKKMP 107 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~i~~~~~~~~~~~~~~~~~~ 107 (261)
.|..+|..+.+. ...++--..+ .++++|||++++++. .++.|.++|..+.+....+......
T Consensus 100 ~VsVID~~t~~v------v~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~ 171 (426)
T 3c75_H 100 QQFVIDGSTGRI------LGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP 171 (426)
T ss_dssp EEEEEETTTTEE------EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred eEEEEECCCCEE------EEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc
Confidence 889999988875 2233322233 899999999998876 3578999999887653322111000
Q ss_pred CCCCCCCeEEEEEeeCCcEEEEecc--CCeEEEEEccCceEEeeccccC-------------------------------
Q 024868 108 PLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILDEPKAH------------------------------- 154 (261)
Q Consensus 108 ~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~------------------------------- 154 (261)
..........+.|+|||++++++.. ++.|.+.|+.+++.+..+....
T Consensus 172 r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v 251 (426)
T 3c75_H 172 RFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGET 251 (426)
T ss_dssp CCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCC
T ss_pred ccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcE
Confidence 0000123456899999999888763 5789999987765432211100
Q ss_pred -------------------------------------------------------------------CceeEEEEcCCCC
Q 024868 155 -------------------------------------------------------------------KSVLDMDFSLDSE 167 (261)
Q Consensus 155 -------------------------------------------------------------------~~v~~~~~s~~~~ 167 (261)
.....++++|+++
T Consensus 252 ~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~ 331 (426)
T 3c75_H 252 KVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSD 331 (426)
T ss_dssp EEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGT
T ss_pred EEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCC
Confidence 0000156677767
Q ss_pred EEEEecC----------CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCC-cceEEEEEeeCCCcEEEEEECCCCeE
Q 024868 168 FLATTST----------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT-KPFLFCTVQRGDKALLAVYDISTWNK 236 (261)
Q Consensus 168 ~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~~~~~~~~~~~d~~i~~~d~~~~~~ 236 (261)
.+++... ++.|.++|+.+.+.+.++.... ....++|+|||+ ++ .++...++.|.++|+.+++.
T Consensus 332 rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~--~P~gia~spDg~~~l----yv~n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 332 RIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH--EIDSINVSQDAEPLL----YALSAGTQTLHIYDAATGEE 405 (426)
T ss_dssp EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECCSSSCEE----EEEETTTTEEEEEETTTCCE
T ss_pred EEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC--CcCeEEEccCCCEEE----EEEcCCCCeEEEEECCCCCE
Confidence 6665432 3469999999999988887543 378999999999 52 24444689999999999999
Q ss_pred EeeeeccCcCeeEEEEeeC
Q 024868 237 IGHKRLLRKPASVLSISLD 255 (261)
Q Consensus 237 ~~~~~~~~~~v~~~~~s~d 255 (261)
+..+...+... .+.++||
T Consensus 406 v~tI~~vG~~P-~~i~~~~ 423 (426)
T 3c75_H 406 LRSVDQLGRGP-QIITTHD 423 (426)
T ss_dssp EEEECCCSSSC-CEEECCC
T ss_pred EEEecCCCCCC-cEEEcCC
Confidence 87763222222 2556665
No 210
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.50 E-value=1.3e-11 Score=105.86 Aligned_cols=214 Identities=10% Similarity=0.078 Sum_probs=131.8
Q ss_pred eEEEEEeeCCcceEEEEecCCCCC------CCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE
Q 024868 8 TCGSWIKRPENVNLVVLGKSSRAS------SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81 (261)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 81 (261)
..++|+|+ ..++.+..++.. ......+|+.++..+... ..........+...+..+.|+|||++|+..
T Consensus 212 ~~~~wspD----~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~--~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~ 285 (741)
T 1yr2_A 212 SGLAWLGN----DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS--ADQPVFATPELPKRGHGASVSSDGRWVVIT 285 (741)
T ss_dssp CCCEESTT----SEEEEEECCCC--------CCCCCEEEEEETTSCGG--GCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred ccEEEECC----CEEEEEEecCcccccccccCCCCCEEEEEECCCCch--hCEEEeccCCCCeEEEEEEECCCCCEEEEE
Confidence 46778874 345544443310 011123688888765542 111222233344458899999999999877
Q ss_pred ecCC-----cEEEEEEeCCccc-cceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc----CCeEEEEEccCc--eEEee
Q 024868 82 TTNG-----GCKLFEVYGGATD-INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV----DGHLRIMHWPSL--RIILD 149 (261)
Q Consensus 82 ~~dg-----~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d~~i~~~d~~~~--~~~~~ 149 (261)
+.++ .|++||+.++... ...+. .+....... ++|+|+.|+..+. ++.|.+||+.++ +....
T Consensus 286 ~~~~~~~~~~l~~~d~~~~~~~~~~~l~------~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l 358 (741)
T 1yr2_A 286 SSEGTDPVNTVHVARVTNGKIGPVTALI------PDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTV 358 (741)
T ss_dssp EECTTCSCCEEEEEEEETTEECCCEEEE------CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEE
T ss_pred EEccCCCcceEEEEECCCCCCcccEEec------CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEE
Confidence 7543 8999999876211 11111 112233333 4588988887764 345999998874 22222
Q ss_pred ccccCCceeEEEEcCCCCEEEEecCCCcEEEEEcc-CCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEE
Q 024868 150 EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAV 228 (261)
Q Consensus 150 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~ 228 (261)
+..+...+..++|+ ++.++++...|+..+||.+. +++....+..+....+..+.++|+++.++ +...+....++|++
T Consensus 359 ~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~-~~~ss~~~P~~i~~ 436 (741)
T 1yr2_A 359 VPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAY-LSFSSFTQPATVLA 436 (741)
T ss_dssp ECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEE-EEEEETTEEEEEEE
T ss_pred ecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEE-EEEcCCCCCCEEEE
Confidence 33333456678887 66777888888887777654 46666666544344588899999998732 22334566789999
Q ss_pred EECCCCeE
Q 024868 229 YDISTWNK 236 (261)
Q Consensus 229 ~d~~~~~~ 236 (261)
||+.+++.
T Consensus 437 ~d~~tg~~ 444 (741)
T 1yr2_A 437 LDPATAKT 444 (741)
T ss_dssp EETTTTEE
T ss_pred EECCCCcE
Confidence 99988764
No 211
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.49 E-value=1.1e-10 Score=91.81 Aligned_cols=192 Identities=11% Similarity=0.055 Sum_probs=111.4
Q ss_pred EEEEEcCCCCceecCCeEEeeec--C---CCCCceEEEECCCCCeEEEEec--CCcEEEEEEeCCccccc-eeeeeC-CC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFD--E---SEGDPMTIAVNPSGDDFVCSTT--NGGCKLFEVYGGATDIN-LLAKKM-PP 108 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~--~---~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~~~~~~~~~~~-~~~~~~-~~ 108 (261)
.+..||..+.+. .....+. . +......++|+|||++|++++. ++.|.++| .+++.... ...... ..
T Consensus 98 ~v~viD~~t~~~----~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~ 172 (373)
T 2mad_H 98 YVEVFDPVTFLP----IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHI 172 (373)
T ss_pred eEEEEECCCCcE----EEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEE
Confidence 577788876543 1111121 0 1134568999999999998874 47899999 87764222 100000 00
Q ss_pred CC----------CCCC---------e-----------------EEEEEeeCCcEEEEeccCCeEEEEEccCceE--Eeec
Q 024868 109 LQ----------DAGP---------Q-----------------KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI--ILDE 150 (261)
Q Consensus 109 ~~----------~~~~---------v-----------------~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~ 150 (261)
.. ..+. + ....+.+++..++..+..+.+.+.|+..... ...+
T Consensus 173 ~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~ 252 (373)
T 2mad_H 173 HPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPI 252 (373)
T ss_pred EeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeee
Confidence 00 0000 0 0112333333323223455666666643321 1111
Q ss_pred c--c--------cCCceeEEEEcCCCCEEEEecC----------CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCC
Q 024868 151 P--K--------AHKSVLDMDFSLDSEFLATTST----------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210 (261)
Q Consensus 151 ~--~--------~~~~v~~~~~s~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 210 (261)
. . .......+.++|+++.++.... ++.|.++|+.+++.+.++.... ...+++|+|||+
T Consensus 253 ~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~--~p~~i~~s~Dg~ 330 (373)
T 2mad_H 253 DALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH--DVDAISVAQDGG 330 (373)
T ss_pred eecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC--CcCeEEECCCCC
Confidence 0 0 0112344788999888777543 3579999999999999886443 488999999999
Q ss_pred cceEEEEEeeC-CCcEEEEEECCCCeEEeee
Q 024868 211 KPFLFCTVQRG-DKALLAVYDISTWNKIGHK 240 (261)
Q Consensus 211 ~~~~~~~~~~~-~d~~i~~~d~~~~~~~~~~ 240 (261)
++ ++++. .++.|.+||+.+++.+..+
T Consensus 331 ~~----l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 331 PD----LYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred eE----EEEEcCCCCeEEEEECCCCCEEeee
Confidence 42 23444 5789999999999988763
No 212
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.48 E-value=5.1e-12 Score=107.43 Aligned_cols=230 Identities=10% Similarity=0.025 Sum_probs=137.5
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
..+..++|+|+ ..++|.+...+ | .....|+.+|..+++.. ...+.. .....++|+ |++.|+.+..+
T Consensus 129 ~~l~~~~~SpD---g~~lAy~~~~~--G-~~~~~i~v~dl~tg~~~-----~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~ 194 (693)
T 3iuj_A 129 TALDQLSFSRD---GRILAYSLSLA--G-SDWREIHLMDVESKQPL-----ETPLKD--VKFSGISWL-GNEGFFYSSYD 194 (693)
T ss_dssp CEEEEEEECTT---SSEEEEEEECS--S-CCEEEEEEEETTTCSEE-----EEEEEE--EESCCCEEE-TTTEEEEEESS
T ss_pred EEEEEEEECCC---CCEEEEEEecC--C-CceEEEEEEECCCCCCC-----ccccCC--ceeccEEEe-CCCEEEEEEec
Confidence 35777788886 44555433222 1 11238999999887741 111211 113568899 99999988777
Q ss_pred C-------------cEEEEEEeCCccccceeeeeCCCCC-CCCCeEEEEEeeCCcEEEEec----cCCeEEEEEccCce-
Q 024868 85 G-------------GCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSVDGSRFAAGG----VDGHLRIMHWPSLR- 145 (261)
Q Consensus 85 g-------------~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~----~d~~i~~~d~~~~~- 145 (261)
. .|++|++.+.......+.. ... +.....++.|+|||++|+... ....++++|+.+++
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~---~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~ 271 (693)
T 3iuj_A 195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFG---AIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA 271 (693)
T ss_dssp CCC-------CCCCEEEEEETTSCGGGCEEEES---CSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC
T ss_pred CcccccccccCCCcEEEEEECCCCcccceEEEe---cCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC
Confidence 4 3888888766532222211 111 233467899999999886643 23589999987663
Q ss_pred EEeeccccCCceeEEEEcCCCCEEEEec-CC---CcEEEEEccCCcE--EEEEeecCCCceEEEEEecCCCcceEEEEEe
Q 024868 146 IILDEPKAHKSVLDMDFSLDSEFLATTS-TD---GSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (261)
Q Consensus 146 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d---~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 219 (261)
....+..+....... |+++|..|+..+ .+ +.|..+|+.+++. ...+..+... +. .|++++++++ +.
T Consensus 272 ~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-~~--~~s~~g~~lv----~~ 343 (693)
T 3iuj_A 272 PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-VL--TVHSGSGYLF----AE 343 (693)
T ss_dssp CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS-CE--EEEEETTEEE----EE
T ss_pred ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC-EE--EEEEECCEEE----EE
Confidence 223333344444444 666666555443 33 5799999987654 3445545443 43 8999999732 22
Q ss_pred eCCC--cEEEEEECCCCeEEeeeec-cCcCeeEEEEeeCCCEEe
Q 024868 220 RGDK--ALLAVYDISTWNKIGHKRL-LRKPASVLSISLDGKYLA 260 (261)
Q Consensus 220 ~~~d--~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~s~dg~~la 260 (261)
...+ ..|++||+..+.. ..+.. ....+..+.++++++.|+
T Consensus 344 ~~~~g~~~l~~~d~~g~~~-~~l~~p~~~~~~~~~~~~d~~~l~ 386 (693)
T 3iuj_A 344 YMVDATARVEQFDYEGKRV-REVALPGLGSVSGFNGKHDDPALY 386 (693)
T ss_dssp EEETTEEEEEEECTTSCEE-EEECCSSSSEEEECCCCTTCSCEE
T ss_pred EEECCeeEEEEEECCCCee-EEeecCCCceEEeeecCCCCCEEE
Confidence 2233 3799999885543 33332 334566777888877654
No 213
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.48 E-value=2.4e-11 Score=93.15 Aligned_cols=197 Identities=11% Similarity=0.084 Sum_probs=126.5
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEee-ec---C-CCCCceEEEECCCCCeEE
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYV-FD---E-SEGDPMTIAVNPSGDDFV 79 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~---~-~~~~v~~~~~~~~~~~l~ 79 (261)
..+.++++.++. ..+.++. ... .++.||.+ +.+ ... .. . ....+.+++++++|+.++
T Consensus 71 ~~~~~i~~~~~~--g~l~v~~-~~~--------~l~~~d~~-g~~------~~~~~~~~~~~~~~~~~~i~~d~~g~l~v 132 (314)
T 1pjx_A 71 GIPAGCQCDRDA--NQLFVAD-MRL--------GLLVVQTD-GTF------EEIAKKDSEGRRMQGCNDCAFDYEGNLWI 132 (314)
T ss_dssp CCEEEEEECSSS--SEEEEEE-TTT--------EEEEEETT-SCE------EECCSBCTTSCBCBCCCEEEECTTSCEEE
T ss_pred CCCceEEEecCC--CcEEEEE-CCC--------CEEEEeCC-CCE------EEEEeccCCCccccCCcCEEECCCCCEEE
Confidence 345667776631 3344433 233 57788877 543 111 11 1 123588999999998777
Q ss_pred EEecC---------------CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEe----eCCcEEEEe-ccCCeEEEE
Q 024868 80 CSTTN---------------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFS----VDGSRFAAG-GVDGHLRIM 139 (261)
Q Consensus 80 ~~~~d---------------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~-~~d~~i~~~ 139 (261)
+...+ +.|..|+.. ++. .... ........++|+ |+++.++++ ..++.|.+|
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~-------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~ 203 (314)
T 1pjx_A 133 TAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM-IQVD-------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSY 203 (314)
T ss_dssp EECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE-EEEE-------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEE
T ss_pred EecCcccccccccccccCCCCeEEEECCC-CCE-EEec-------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEE
Confidence 66544 345555443 221 1111 112346789999 999765554 567899999
Q ss_pred Ecc-Cce-----EEeeccccC-CceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcc
Q 024868 140 HWP-SLR-----IILDEPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP 212 (261)
Q Consensus 140 d~~-~~~-----~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 212 (261)
|.. +++ .......+. ..+..++++++|+++++...++.|.+||.++++.+..+..+.. .+.+++|+|+|+.+
T Consensus 204 ~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~i~~~~dg~~l 282 (314)
T 1pjx_A 204 DIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTI 282 (314)
T ss_dssp EEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEE
T ss_pred ECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCC-CceeEEECCCCCEE
Confidence 976 343 112222222 5578899999999888877788999999987777666654433 58999999999853
Q ss_pred eEEEEEeeCCCcEEEEEECCC
Q 024868 213 FLFCTVQRGDKALLAVYDIST 233 (261)
Q Consensus 213 ~~~~~~~~~~d~~i~~~d~~~ 233 (261)
.++...++.|..|++..
T Consensus 283 ----~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 283 ----FVTEHENNAVWKFEWQR 299 (314)
T ss_dssp ----EEEETTTTEEEEEECSS
T ss_pred ----EEEeCCCCeEEEEeCCC
Confidence 35556678899999875
No 214
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.48 E-value=2.9e-11 Score=94.18 Aligned_cols=237 Identities=8% Similarity=-0.079 Sum_probs=138.1
Q ss_pred eeeEEEEEeeCCcceEEEEec-CCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec-
Q 024868 6 TVTCGSWIKRPENVNLVVLGK-SSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT- 83 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 83 (261)
.+..++++++ ..++++.. .++ + . ..|+.++ ++.+..-+........|-..+..++++++++.+++-..
T Consensus 18 ~p~~va~~~~---g~~~v~~~~~~~--~--~-~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~ 87 (343)
T 2qe8_A 18 APGNITLTPD---GRLFLSLHQFYQ--P--E-MQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGN 87 (343)
T ss_dssp CEEEEEECTT---SCEEEEECGGGC--C--S-CSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHH
T ss_pred CcceEEECCC---CCEEEEeCCCCC--C--c-eEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCC
Confidence 4566777664 44555532 111 0 1 3677776 33321111000112235567999999999876665433
Q ss_pred ----CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEE-EEec---cCCeEEEEEccCceEEeecccc--
Q 024868 84 ----NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGG---VDGHLRIMHWPSLRIILDEPKA-- 153 (261)
Q Consensus 84 ----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~---~d~~i~~~d~~~~~~~~~~~~~-- 153 (261)
++.|.+||+.+++....... ......+...+..++++|++..+ ++-. .++.|.+||+.+++.......+
T Consensus 88 ~~~~~~~i~~~d~~tg~~~~~~~~-~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~ 166 (343)
T 2qe8_A 88 QSKSVPKLVAWDTLNNQLSRVIYL-PPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG 166 (343)
T ss_dssp HHTSCCEEEEEETTTTEEEEEEEC-CTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT
T ss_pred CcCCCCeEEEEECCCCeEEEEEEC-ChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc
Confidence 57899999987663222111 01111223456899999865444 4444 5788999999877654332211
Q ss_pred ---------------------------CCceeEEEEcCCCCEEEEecCCC-cEEEEEcc---CCc--------EEEEEee
Q 024868 154 ---------------------------HKSVLDMDFSLDSEFLATTSTDG-SARIWKTE---DGV--------AWTFLTR 194 (261)
Q Consensus 154 ---------------------------~~~v~~~~~s~~~~~l~~~~~d~-~i~iwd~~---~~~--------~~~~~~~ 194 (261)
...+..++|+|||+.|+.+..++ .+..++.. .+. .+.. ..
T Consensus 167 ~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~g 245 (343)
T 2qe8_A 167 IAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIER-YS 245 (343)
T ss_dssp TSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEE-EE
T ss_pred ccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEe-cc
Confidence 01357899999999888876655 45555432 111 0111 12
Q ss_pred cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc-CcCeeEEEEeeCCCEEe
Q 024868 195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGKYLA 260 (261)
Q Consensus 195 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~s~dg~~la 260 (261)
+.. ....++++++|.. .++...++.|.+||..+++........ ...+.+++|.++|++++
T Consensus 246 ~~g-~pdgia~d~~G~l-----~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v 306 (343)
T 2qe8_A 246 EKP-ICDGISIDKDHNI-----YVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYF 306 (343)
T ss_dssp ECC-SCSCEEECTTCCE-----EEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEE
T ss_pred cCC-CCceEEECCCCCE-----EEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEE
Confidence 222 3567899999976 466667789999998566643222221 34678999999988665
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.46 E-value=1.6e-12 Score=110.46 Aligned_cols=183 Identities=11% Similarity=0.083 Sum_probs=119.2
Q ss_pred CCCCceEEEECCCCCeEEEEec-----CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC--
Q 024868 62 SEGDPMTIAVNPSGDDFVCSTT-----NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-- 134 (261)
Q Consensus 62 ~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-- 134 (261)
|...+..++|||||++|+.+.. ...|++||+.+++........ .....++|+ |++.|+.+..+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--------~k~~~~~Ws-Dg~~l~y~~~~~~~ 197 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--------VKFSGISWL-GNEGFFYSSYDKPD 197 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--------EESCCCEEE-TTTEEEEEESSCCC
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--------ceeccEEEe-CCCEEEEEEecCcc
Confidence 5557889999999999985432 257999999988742211100 012457899 999998887663
Q ss_pred -----------eEEEEEccCce----EEeeccc-cCCceeEEEEcCCCCEEEEecC----CCcEEEEEccCCc-EEEEEe
Q 024868 135 -----------HLRIMHWPSLR----IILDEPK-AHKSVLDMDFSLDSEFLATTST----DGSARIWKTEDGV-AWTFLT 193 (261)
Q Consensus 135 -----------~i~~~d~~~~~----~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~----d~~i~iwd~~~~~-~~~~~~ 193 (261)
.|++|++.+.. .+..... +.....++.|+|||++|+.... ++.|+++|+.+++ ....+.
T Consensus 198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~ 277 (693)
T 3iuj_A 198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ 277 (693)
T ss_dssp -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE
T ss_pred cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe
Confidence 39999987654 2222222 2335778999999998865332 3589999998763 344555
Q ss_pred ecCCCceEEEEEecCCCcceEEEEEee--CCCcEEEEEECCCCeE--EeeeeccCcCeeEEEEeeCCCEEe
Q 024868 194 RNSDEKIELCRFSKDGTKPFLFCTVQR--GDKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 194 ~~~~~~v~~~~~~p~~~~~~~~~~~~~--~~d~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
.+... .... |+++|..+++ .+. ...+.|..+|+.+++. ...+..+...+. .|++++++|+
T Consensus 278 ~~~~~-~~~~-~~~~g~~l~~---~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv 341 (693)
T 3iuj_A 278 GDLDA-DVSL-VDNKGSTLYL---LTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLF 341 (693)
T ss_dssp CSSSS-CEEE-EEEETTEEEE---EECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEE
T ss_pred CCCCc-eEEE-EeccCCEEEE---EECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEE
Confidence 44442 4444 7788887432 222 2247899999987653 223444544444 8999999876
No 216
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.45 E-value=2e-11 Score=95.33 Aligned_cols=223 Identities=12% Similarity=0.005 Sum_probs=133.5
Q ss_pred EeeCCcceEEEEecC----CCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe------
Q 024868 13 IKRPENVNLVVLGKS----SRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST------ 82 (261)
Q Consensus 13 ~~~~~~~~~~~~g~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------ 82 (261)
.|.|+...+.++... ++ .++.+|..+.+. ...++....+ . ++++|||+++++++
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~--------~V~ViD~~t~~v------~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~ 102 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVT--------QQFVIDGEAGRV------IGMIDGGFLP-N-PVVADDGSFIAHASTVFSRI 102 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSE--------EEEEEETTTTEE------EEEEEECSSC-E-EEECTTSSCEEEEEEEEEET
T ss_pred ccCCCCCEEEEEcCcccCCCC--------EEEEEECCCCeE------EEEEECCCCC-c-EEECCCCCEEEEEccccccc
Confidence 344544555555433 34 899999988775 2233322233 4 99999999988775
Q ss_pred ----cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc--CCeEEEEEccCceEEeeccccCCc
Q 024868 83 ----TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILDEPKAHKS 156 (261)
Q Consensus 83 ----~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~ 156 (261)
.++.|.+||..+.+....+....-...........+.|+|||++++++.. ++.|.++|+.+++.+..+....
T Consensus 103 ~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-- 180 (386)
T 3sjl_D 103 ARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-- 180 (386)
T ss_dssp TEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--
T ss_pred ccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--
Confidence 35679999998876533221100000001124567999999999888863 6899999999998876654322
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEEccC-CcEEEEEeecC---CCce-EEEEEe-cCCCcceEEEEEeeCCCcEEEEEE
Q 024868 157 VLDMDFSLDSEFLATTSTDGSARIWKTED-GVAWTFLTRNS---DEKI-ELCRFS-KDGTKPFLFCTVQRGDKALLAVYD 230 (261)
Q Consensus 157 v~~~~~s~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~---~~~v-~~~~~~-p~~~~~~~~~~~~~~~d~~i~~~d 230 (261)
. ...+....+.+++.+.||.+.+.++.+ ++......... ..++ ....|. ++|++ ++ .+.+|++++.|
T Consensus 181 ~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~-----~~-vs~~g~V~v~d 253 (386)
T 3sjl_D 181 C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRL-----VW-PTYTGKIHQID 253 (386)
T ss_dssp E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEE-----EE-EBTTSEEEEEE
T ss_pred c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcE-----EE-EeCCCEEEEEE
Confidence 1 222333455666777788888888875 55432221111 1122 124565 67765 22 34478999999
Q ss_pred CCCCe--EEeeeec----------cCcCeeEEEEeeCCCEEe
Q 024868 231 ISTWN--KIGHKRL----------LRKPASVLSISLDGKYLA 260 (261)
Q Consensus 231 ~~~~~--~~~~~~~----------~~~~v~~~~~s~dg~~la 260 (261)
+.+.. .+..... .......++++|+++.|.
T Consensus 254 ~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~ly 295 (386)
T 3sjl_D 254 LSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY 295 (386)
T ss_dssp CTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEE
T ss_pred CCCCcceeecceeccccccccccccCCCcceeeECCCCCeEE
Confidence 97654 2222220 112344577888887664
No 217
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.44 E-value=7.9e-11 Score=92.82 Aligned_cols=240 Identities=9% Similarity=0.052 Sum_probs=140.8
Q ss_pred eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEE-----------C--CCCCeEEEE-ecCC
Q 024868 20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV-----------N--PSGDDFVCS-TTNG 85 (261)
Q Consensus 20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----------~--~~~~~l~~~-~~dg 85 (261)
.++.+...++....+..+.+...|++...... -.....++.-.+....+.| + +++++|++. ..++
T Consensus 28 ~y~~~~~~~~~~~~~d~la~vDvdp~s~ty~~-vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~ 106 (462)
T 2ece_A 28 AYVACLYTGTGINRADFIAVVDVNPKSETYSK-IVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSS 106 (462)
T ss_dssp EEEEEECTTTTCCCCCEEEEEECCTTSTTTTS-EEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTC
T ss_pred EEEEeeccCCCCCCCCeEEEEECCCCCCCcce-EEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCC
Confidence 34444443332234555555556654443211 1222333332334444445 6 788887654 4568
Q ss_pred cEEEEEEeCCccccceeeeeC-CCC---CCCCCeEEEEEeeCCcEEEEeccC------CeEEEEEccCceEEeeccccCC
Q 024868 86 GCKLFEVYGGATDINLLAKKM-PPL---QDAGPQKCLSFSVDGSRFAAGGVD------GHLRIMHWPSLRIILDEPKAHK 155 (261)
Q Consensus 86 ~i~i~~~~~~~~~~~~~~~~~-~~~---~~~~~v~~~~~s~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~ 155 (261)
+|+++|+.+.....++..... ..+ ........+..+|+| .++++..+ +.+.++|.++.+.+........
T Consensus 107 ~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~ 185 (462)
T 2ece_A 107 RIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRG 185 (462)
T ss_dssp CEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCT
T ss_pred eEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCC
Confidence 899999975532122111100 000 011234567888999 66665444 7899999999988776653322
Q ss_pred ---ceeEEEEcCCCCEEEEec-------------------CCCcEEEEEccCCcEEEEEeec-CCCceEEEEE--ecCCC
Q 024868 156 ---SVLDMDFSLDSEFLATTS-------------------TDGSARIWKTEDGVAWTFLTRN-SDEKIELCRF--SKDGT 210 (261)
Q Consensus 156 ---~v~~~~~s~~~~~l~~~~-------------------~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~--~p~~~ 210 (261)
--+.+.|+|+++.+++.. .+.+|.+||+.+++.+.++... .+.....+.| +|+++
T Consensus 186 ~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~ 265 (462)
T 2ece_A 186 DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKL 265 (462)
T ss_dssp TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCC
T ss_pred CccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCC
Confidence 245688999999888874 3689999999999888888753 2223556656 99999
Q ss_pred cceEEEEEe-eCCCcEEEEEECCCCeE--Eeee--ecc----------------CcCeeEEEEeeCCCEEeC
Q 024868 211 KPFLFCTVQ-RGDKALLAVYDISTWNK--IGHK--RLL----------------RKPASVLSISLDGKYLAM 261 (261)
Q Consensus 211 ~~~~~~~~~-~~~d~~i~~~d~~~~~~--~~~~--~~~----------------~~~v~~~~~s~dg~~la~ 261 (261)
+.|+.+.++ ...+++|.+|....++. +..+ ... ......+.+||||++|.+
T Consensus 266 ~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYV 337 (462)
T 2ece_A 266 MGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYL 337 (462)
T ss_dssp EEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEE
T ss_pred EEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEE
Confidence 855432211 11456787766654432 1111 000 245688999999999863
No 218
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.44 E-value=1e-10 Score=89.19 Aligned_cols=185 Identities=13% Similarity=0.152 Sum_probs=120.6
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeec-C-CCCCceEEEECCCCCeEEEEe
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD-E-SEGDPMTIAVNPSGDDFVCST 82 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~ 82 (261)
..+.++++.++ ..+++.. +. .|+.||++++.+.. ..... . ....+..++++|+|+++++..
T Consensus 54 ~~~~~i~~~~d---G~l~v~~--~~--------~l~~~d~~~g~~~~----~~~~~~~~~~~~~~di~~d~dG~l~~~~~ 116 (297)
T 3g4e_A 54 APVSSVALRQS---GGYVATI--GT--------KFCALNWKEQSAVV----LATVDNDKKNNRFNDGKVDPAGRYFAGTM 116 (297)
T ss_dssp SCEEEEEEBTT---SSEEEEE--TT--------EEEEEETTTTEEEE----EEECCTTCSSEEEEEEEECTTSCEEEEEE
T ss_pred CceEEEEECCC---CCEEEEE--CC--------eEEEEECCCCcEEE----EEecCCCCCCCCCCCEEECCCCCEEEecC
Confidence 45777888764 3354443 34 68889987766411 11111 1 123578899999999666543
Q ss_pred c---------CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEE-eccCCeEEEEEc--cCceE----
Q 024868 83 T---------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHW--PSLRI---- 146 (261)
Q Consensus 83 ~---------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~~~d~--~~~~~---- 146 (261)
. ...-.+|.+.......... ......+.++|+||++.++. .+.++.|..|++ .++..
T Consensus 117 ~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-------~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~ 189 (297)
T 3g4e_A 117 AEETAPAVLERHQGALYSLFPDHHVKKYF-------DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRR 189 (297)
T ss_dssp ECCSBTTBCCTTCEEEEEECTTSCEEEEE-------EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEE
T ss_pred CcccccccccCCCcEEEEEECCCCEEEEe-------eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcE
Confidence 2 2335677765432211111 11234578999999987654 456788999987 34432
Q ss_pred -EeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEe-cCCCcceE
Q 024868 147 -ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS-KDGTKPFL 214 (261)
Q Consensus 147 -~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~~~ 214 (261)
...+.........++++++|++.++...++.|..||..+++.+..+..+.. .+++++|. |+++.+|+
T Consensus 190 ~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~v 258 (297)
T 3g4e_A 190 SVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYV 258 (297)
T ss_dssp EEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEE
T ss_pred EEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEE
Confidence 112222335678999999998888877788899999999999888876544 58999999 89887553
No 219
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.44 E-value=1.5e-11 Score=97.94 Aligned_cols=182 Identities=8% Similarity=-0.039 Sum_probs=119.2
Q ss_pred CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC--eEEEEEc
Q 024868 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG--HLRIMHW 141 (261)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~~~d~ 141 (261)
..+..++|+++++.+++...++.|++||..++..... .. ...... ++|+|+++.|+++..++ .|.+++.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~-~~-------~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~ 201 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTV-HP-------GFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMK 201 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEE-EE-------TCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEe-ec-------cCCCCc-eeEecCCCcEEEEecCCCceEEEEEc
Confidence 3578999999998777766678999999987653111 10 112233 89999999888887655 7888887
Q ss_pred cCceEEeec---cc-cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEE----EeecCCCceE-EEEEecCCCcc
Q 024868 142 PSLRIILDE---PK-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF----LTRNSDEKIE-LCRFSKDGTKP 212 (261)
Q Consensus 142 ~~~~~~~~~---~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~----~~~~~~~~v~-~~~~~p~~~~~ 212 (261)
..+...... .. ....+.+++++|++..|+.+..++.|+.||..++..... .......... .++|+|++..+
T Consensus 202 ~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l 281 (409)
T 3hrp_A 202 ASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF 281 (409)
T ss_dssp GGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred CCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence 655432222 12 334678899999555555566788999999987764322 1111111113 89999965553
Q ss_pred eEEEEEeeCCCcEEEEEECCCCeEEeeeeccC---------------cCeeEEEEeeCCCEEe
Q 024868 213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLR---------------KPASVLSISLDGKYLA 260 (261)
Q Consensus 213 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~---------------~~v~~~~~s~dg~~la 260 (261)
.++...++.|+.||.... . ..+.... .....++++|+|++++
T Consensus 282 ----yv~d~~~~~I~~~~~~g~-~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyv 338 (409)
T 3hrp_A 282 ----YMSDQNLSSVYKITPDGE-C-EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYI 338 (409)
T ss_dssp ----EEEETTTTEEEEECTTCC-E-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEE
T ss_pred ----EEEeCCCCEEEEEecCCC-E-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEE
Confidence 355667789999997643 2 2222221 3468899999998654
No 220
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.43 E-value=2.2e-13 Score=107.09 Aligned_cols=204 Identities=12% Similarity=0.092 Sum_probs=109.0
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccc
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD 98 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~ 98 (261)
...+++++.++ .++.||..+++. ...+.. +.+.+..+..++..+++++.|+.|+.||..+++..
T Consensus 9 ~~~v~~gs~dg--------~v~a~d~~tG~~------~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~ 72 (369)
T 2hz6_A 9 ETLLFVSTLDG--------SLHAVSKRTGSI------KWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL 72 (369)
T ss_dssp TTEEEEEETTS--------EEEEEETTTCCE------EEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCS
T ss_pred CCEEEEEcCCC--------EEEEEECCCCCE------EEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCcee
Confidence 45777888888 999999988775 222332 34545555567777888789999999999877642
Q ss_pred cceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcE
Q 024868 99 INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSA 178 (261)
Q Consensus 99 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 178 (261)
...... ........++ +. ++..+++++.++.++.||.++++.+.....+. ...++|++..+++++.|+.|
T Consensus 73 w~~~~~-~~~~~~~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v 142 (369)
T 2hz6_A 73 TKLPFT-IPELVQASPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTI 142 (369)
T ss_dssp EECSCC-HHHHHTTCSC----C------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEE
T ss_pred eeeecc-CccccccCce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEE
Confidence 221100 0000001111 11 24467777789999999999998876654432 23456788889999999999
Q ss_pred EEEEccCCcEEEEEeecCCCceEEEEEecCC---CcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCe-eEEEEee
Q 024868 179 RIWKTEDGVAWTFLTRNSDEKIELCRFSKDG---TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPA-SVLSISL 254 (261)
Q Consensus 179 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v-~~~~~s~ 254 (261)
+.||.++|+.+..+.... .....++++. .. ++.++.+|.++.||.++|+.+..... ..++ ....+++
T Consensus 143 ~a~d~~tG~~~W~~~~~~---~~~~~~~~~~~~~~~-----v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~ 213 (369)
T 2hz6_A 143 TMYDTKTRELRWNATYFD---YAASLPEDDVDYKMS-----HFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQR 213 (369)
T ss_dssp ECCCSSSSSCCCEEEEEE---ECCBCCCCCTTCCCC-----EEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTT
T ss_pred EEEECCCCCEEEeEeccc---ccCccccCCccccce-----EEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecC
Confidence 999999998776654321 1223344432 33 35567789999999999998765553 3343 3455666
Q ss_pred CCC
Q 024868 255 DGK 257 (261)
Q Consensus 255 dg~ 257 (261)
||.
T Consensus 214 dg~ 216 (369)
T 2hz6_A 214 EGL 216 (369)
T ss_dssp SSC
T ss_pred Cce
Confidence 764
No 221
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.40 E-value=2.8e-10 Score=87.92 Aligned_cols=177 Identities=12% Similarity=0.001 Sum_probs=112.9
Q ss_pred CceEEEECCCCCeE-EEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC
Q 024868 65 DPMTIAVNPSGDDF-VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (261)
Q Consensus 65 ~v~~~~~~~~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 143 (261)
...++.|+|++..+ ++...++.|..||..++... . +.....+.++.|+|+|+++++. .+ .|.+||..+
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~--~-------~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~ 118 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT--V-------HALPFMGSALAKISDSKQLIAS-DD-GLFLRDTAT 118 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE--E-------EECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTT
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE--E-------EECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCC
Confidence 45688999975544 55556788999998765421 1 1113578999999999877765 33 499999877
Q ss_pred ceEEeeccc---c-CCceeEEEEcCCCCEEEEecC------CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcce
Q 024868 144 LRIILDEPK---A-HKSVLDMDFSLDSEFLATTST------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213 (261)
Q Consensus 144 ~~~~~~~~~---~-~~~v~~~~~s~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 213 (261)
++....... . ...+..+.++|+|+++++... .+.|..++ +++... +..... ....++|+|+|+.+|
T Consensus 119 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~-~~~~i~~s~dg~~ly 194 (326)
T 2ghs_A 119 GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADIS-IPNSICFSPDGTTGY 194 (326)
T ss_dssp CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEES-SEEEEEECTTSCEEE
T ss_pred CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCc-ccCCeEEcCCCCEEE
Confidence 765322111 1 125889999999997765432 24455555 555433 322222 377899999998732
Q ss_pred EEEEEeeCCCcEEEEEECC--CC-eE-----EeeeeccCcCeeEEEEeeCCCEEe
Q 024868 214 LFCTVQRGDKALLAVYDIS--TW-NK-----IGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 214 ~~~~~~~~~d~~i~~~d~~--~~-~~-----~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
++...++.|.+||+. ++ +. ...+......+..++++++|++.+
T Consensus 195 ----v~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwv 245 (326)
T 2ghs_A 195 ----FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWN 245 (326)
T ss_dssp ----EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEE
T ss_pred ----EEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEE
Confidence 445567899999986 55 31 111111234567788888887553
No 222
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.39 E-value=5.6e-09 Score=78.24 Aligned_cols=221 Identities=9% Similarity=-0.037 Sum_probs=136.3
Q ss_pred eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cCC
Q 024868 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNG 85 (261)
Q Consensus 7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg 85 (261)
+..++|.++ ...+.++....+ .|+.++.++... .............+++++++..|+.+. ..+
T Consensus 38 ~~gi~~d~~--~~~ly~~d~~~~--------~I~~~~~~g~~~------~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~ 101 (267)
T 1npe_A 38 IIGLAFDCV--DKVVYWTDISEP--------SIGRASLHGGEP------TTIIRQDLGSPEGIALDHLGRTIFWTDSQLD 101 (267)
T ss_dssp EEEEEEETT--TTEEEEEETTTT--------EEEEEESSSCCC------EEEECTTCCCEEEEEEETTTTEEEEEETTTT
T ss_pred EEEEEEecC--CCEEEEEECCCC--------EEEEEecCCCCc------EEEEECCCCCccEEEEEecCCeEEEEECCCC
Confidence 356677653 355666665566 888888876542 222222235688999999766665554 457
Q ss_pred cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc---CCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---DGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 162 (261)
.|.+++.+.... ..... ........++++|++..|+.+.. .+.|..+++..................+++
T Consensus 102 ~I~~~~~~g~~~-~~~~~------~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~ 174 (267)
T 1npe_A 102 RIEVAKMDGTQR-RVLFD------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTF 174 (267)
T ss_dssp EEEEEETTSCSC-EEEEC------SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEE
T ss_pred EEEEEEcCCCCE-EEEEE------CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEE
Confidence 898888865432 11110 11245689999997655555543 367888887533221111122235789999
Q ss_pred cCCCCEEEE-ecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868 163 SLDSEFLAT-TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (261)
Q Consensus 163 s~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~ 241 (261)
+|++..|+. -...+.|.++|........... ... ....++.. +..+ .++....+.|..+|..+++.+..+.
T Consensus 175 d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~~~-~P~gi~~d--~~~l----yva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 175 DAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-GLQ-YPFAVTSY--GKNL----YYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-CCC-SEEEEEEE--TTEE----EEEETTTTEEEEEETTTTEEEEEEC
T ss_pred cCCCCEEEEEECCCCEEEEEecCCCceEEEec-CCC-CceEEEEe--CCEE----EEEECCCCeEEEEeCCCCCceEEEc
Confidence 998766654 4456889999987544333333 222 35666653 4543 2455566899999999998877665
Q ss_pred ccC-cCeeEEEEeeCCCE
Q 024868 242 LLR-KPASVLSISLDGKY 258 (261)
Q Consensus 242 ~~~-~~v~~~~~s~dg~~ 258 (261)
... .....+++.|++.-
T Consensus 247 ~g~~~~p~gi~~~~~~~~ 264 (267)
T 1npe_A 247 PHKQTRLYGITIALSQCP 264 (267)
T ss_dssp CSSCCCCCCEEEECSCC-
T ss_pred cccccccceeeecCccCC
Confidence 443 24788999998753
No 223
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.38 E-value=9.2e-12 Score=101.31 Aligned_cols=214 Identities=7% Similarity=0.015 Sum_probs=137.6
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEE-C-CCCCeEEEEe--------------
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV-N-PSGDDFVCST-------------- 82 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~-------------- 82 (261)
..+.+....+. +|..+|..+.+.. ....++. ...+..+++ + |+++++++++
T Consensus 102 ~~lfVnd~~~~--------rVavIdl~t~~~~----~ii~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~ 168 (595)
T 1fwx_A 102 RFLFMNDKANT--------RVARVRCDVMKCD----AILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME 168 (595)
T ss_dssp EEEEEEETTTT--------EEEEEETTTTEEE----EEEECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred CEEEEEcCCCC--------EEEEEECCCceEe----eEEeCCC-CCCCcceeeeecCCCcEEEEecccccccCCCCcccc
Confidence 44555555555 8999999887751 1112322 245788888 5 9999998874
Q ss_pred ----cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC------------------------
Q 024868 83 ----TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG------------------------ 134 (261)
Q Consensus 83 ----~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~------------------------ 134 (261)
.++.+.+.|..+.+...+... .+....++++|||+++++.+.+.
T Consensus 169 ~~~~~~~~vtvID~~t~~v~~qI~V--------gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~ 240 (595)
T 1fwx_A 169 DVANYVNVFTAVDADKWEVAWQVLV--------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE 240 (595)
T ss_dssp CGGGEEEEEEEEETTTTEEEEEEEE--------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH
T ss_pred cccccCceEEEEECCCCeEEEEEEe--------CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccc
Confidence 235688888877654222211 11234578999999988876432
Q ss_pred --------------eEEEEEccC--ceE-EeeccccCCceeEEEEcCCCCEEEEec-CCCcEEEEEccCCc---------
Q 024868 135 --------------HLRIMHWPS--LRI-ILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGV--------- 187 (261)
Q Consensus 135 --------------~i~~~d~~~--~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~--------- 187 (261)
.|.+.|.++ ++. +..+. -.....++.++|||+++++++ .+.+|.++|+.+.+
T Consensus 241 ~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~ 319 (595)
T 1fwx_A 241 IEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP 319 (595)
T ss_dssp HHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCG
T ss_pred eeEeccCCCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCc
Confidence 356666665 322 22222 223467899999999887665 57899999998653
Q ss_pred ---EEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC----------CeEEeeeeccCcCe-----eE
Q 024868 188 ---AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST----------WNKIGHKRLLRKPA-----SV 249 (261)
Q Consensus 188 ---~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~----------~~~~~~~~~~~~~v-----~~ 249 (261)
...... .+...+.++|+|+| +.| .+..-|++|.+||+.+ .+.+..+..+-.+- ..
T Consensus 320 ~~~v~~~v~--vG~gP~h~aF~~dG-~aY----~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g 392 (595)
T 1fwx_A 320 RSAVVAEPE--LGLGPLHTAFDGRG-NAY----TSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMG 392 (595)
T ss_dssp GGGEEECCB--CCSCEEEEEECTTS-EEE----EEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTT
T ss_pred ccceEEEcC--CCCCcceEEECCCC-eEE----EEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccc
Confidence 333333 33358899999999 533 5567788999999976 44555555443221 23
Q ss_pred EEEeeCCCEEeC
Q 024868 250 LSISLDGKYLAM 261 (261)
Q Consensus 250 ~~~s~dg~~la~ 261 (261)
+.++|||++|++
T Consensus 393 ~t~~~DGk~l~~ 404 (595)
T 1fwx_A 393 ETLDATNDWLVC 404 (595)
T ss_dssp TSTTCCSSEEEE
T ss_pred eEeCCCCCEEEE
Confidence 467899999864
No 224
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.38 E-value=1.2e-10 Score=86.35 Aligned_cols=179 Identities=8% Similarity=-0.013 Sum_probs=121.3
Q ss_pred ceEEEECCCCCeEEEEec--CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEE-eccCCeEEEEEcc
Q 024868 66 PMTIAVNPSGDDFVCSTT--NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWP 142 (261)
Q Consensus 66 v~~~~~~~~~~~l~~~~~--dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~~~d~~ 142 (261)
...++|++++..+++.+. ++.|.++|..+++...... +........+++. ++.|+. .-.++.+.++|..
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~------l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~ 94 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK------MDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRR 94 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE------CCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETT
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe------cCCCcceEEEEEe--CCEEEEEEecCCEEEEEECC
Confidence 579999998754444433 5789999999887533221 1111122344444 545544 4478899999999
Q ss_pred CceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC-C---ceEEEEEecCCCcceEEEEE
Q 024868 143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-E---KIELCRFSKDGTKPFLFCTV 218 (261)
Q Consensus 143 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~---~v~~~~~~p~~~~~~~~~~~ 218 (261)
+.+.+..+..... ....+++||+.++.+..++.|.++|..+.+.+..+..... . .++.+.|. +|+. .+
T Consensus 95 t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l-----yv 166 (266)
T 2iwa_A 95 TLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV-----WA 166 (266)
T ss_dssp TTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE-----EE
T ss_pred CCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE-----EE
Confidence 9888766543311 2234667888777777788999999999998888764321 1 26688888 6643 25
Q ss_pred eeCCCcEEEEEECCCCeEEeeeeccC-------------cCeeEEEEeeCCCEEe
Q 024868 219 QRGDKALLAVYDISTWNKIGHKRLLR-------------KPASVLSISLDGKYLA 260 (261)
Q Consensus 219 ~~~~d~~i~~~d~~~~~~~~~~~~~~-------------~~v~~~~~s~dg~~la 260 (261)
....++.|.+.|..+++.+..+.... .....++|+|+++.|.
T Consensus 167 n~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lf 221 (266)
T 2iwa_A 167 NIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIF 221 (266)
T ss_dssp EETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEE
T ss_pred ecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEE
Confidence 55567899999999999887776421 2458999999987664
No 225
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.33 E-value=2.4e-10 Score=87.42 Aligned_cols=185 Identities=9% Similarity=-0.055 Sum_probs=117.0
Q ss_pred ecCCCCCceEEEECCCCC-eEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEE
Q 024868 59 FDESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR 137 (261)
Q Consensus 59 ~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 137 (261)
+...........|+|+++ .+++...++.|..|+.. +.. ... ......+..++++++|+++++...++.|.
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~--~~~------~~~~~~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV--DVL------LDATAFTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE--EEE------EESCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE--EEE------eCCCCccceeeECCCCCEEEEECCCCEEE
Confidence 334455678899999998 45566667889999873 321 111 11235688999999999777766667899
Q ss_pred EEEccCceEEeecccc----CCceeEEEEcCCCCEEEE----ecC-------------CCcEEEEEccCCcEEEEEeecC
Q 024868 138 IMHWPSLRIILDEPKA----HKSVLDMDFSLDSEFLAT----TST-------------DGSARIWKTEDGVAWTFLTRNS 196 (261)
Q Consensus 138 ~~d~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~----~~~-------------d~~i~iwd~~~~~~~~~~~~~~ 196 (261)
.|+.. ++........ ...+..++++|+|+++++ +.. .+.|..+|..+++..... ..
T Consensus 111 ~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~ 187 (305)
T 3dr2_A 111 RSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DL 187 (305)
T ss_dssp EECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EE
T ss_pred EECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cC
Confidence 99975 4432211111 124678999999998886 332 246777787667654433 22
Q ss_pred CCceEEEEEecCCCcceEEEEEeeCC-----CcEEEEEECCCCeEE--eee-eccCcCeeEEEEeeCCCEEe
Q 024868 197 DEKIELCRFSKDGTKPFLFCTVQRGD-----KALLAVYDISTWNKI--GHK-RLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 197 ~~~v~~~~~~p~~~~~~~~~~~~~~~-----d~~i~~~d~~~~~~~--~~~-~~~~~~v~~~~~s~dg~~la 260 (261)
. ....++|+||++.+| ++... ++.|++||+..+... ..+ .........++++++|++.+
T Consensus 188 ~-~p~gl~~spdg~~ly----v~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv 254 (305)
T 3dr2_A 188 D-HPNGLAFSPDEQTLY----VSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS 254 (305)
T ss_dssp S-SEEEEEECTTSSEEE----EEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE
T ss_pred C-CCcceEEcCCCCEEE----EEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE
Confidence 3 478899999999743 22222 368999998765411 111 11223455688888887543
No 226
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.32 E-value=9.4e-11 Score=91.49 Aligned_cols=200 Identities=9% Similarity=0.005 Sum_probs=121.6
Q ss_pred EEEEEcCCCCceecCCeEEeeecCC-----CCCceEEEECCCCCeEEEEec--CCcEEE--EEEeCCccccce------e
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDES-----EGDPMTIAVNPSGDDFVCSTT--NGGCKL--FEVYGGATDINL------L 102 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~--dg~i~i--~~~~~~~~~~~~------~ 102 (261)
.|..+|+.+.+. .....+.+. ......++++|||++++++.. +..+.+ +|..+ ...... .
T Consensus 97 ~VsviD~~T~~v----v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v~~i~v~~~~~~~ 171 (368)
T 1mda_H 97 YVEVFDPVTFLP----IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFHIH 171 (368)
T ss_dssp EEEEECTTTCCE----EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEEECSSCCCCE
T ss_pred EEEEEECCCCCE----EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-ceEEECCCceEEc
Confidence 789999988775 122222211 134678999999999998875 356888 77754 100000 0
Q ss_pred eee-----------------CC---------------CC-CCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCce--EE
Q 024868 103 AKK-----------------MP---------------PL-QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR--II 147 (261)
Q Consensus 103 ~~~-----------------~~---------------~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~--~~ 147 (261)
... .. .. ....+. . ++++..++..+. +.+.+.|..... .+
T Consensus 172 p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~ 246 (368)
T 1mda_H 172 PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMK 246 (368)
T ss_dssp EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEE
T ss_pred cCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEE
Confidence 000 00 00 001111 2 444454455545 778888875432 11
Q ss_pred eeccc------cC----CceeEEEEcCCCCEEEEecC---------CCcEEEEEccCCcEEEEEeecCCCceEEEEEecC
Q 024868 148 LDEPK------AH----KSVLDMDFSLDSEFLATTST---------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD 208 (261)
Q Consensus 148 ~~~~~------~~----~~v~~~~~s~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~ 208 (261)
..+.. .. .....+.++||++.++.+.. ++.+.++|+.+++.+.++.... ....++|+||
T Consensus 247 ~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~D 324 (368)
T 1mda_H 247 AAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQD 324 (368)
T ss_dssp CCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCS
T ss_pred EEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCC
Confidence 11110 01 11223789999998876532 2356799999999998887554 4889999999
Q ss_pred CCcceEEEEEeeC-CCcEEEEEECCCCeEEeeeeccCcCeeEEEEee
Q 024868 209 GTKPFLFCTVQRG-DKALLAVYDISTWNKIGHKRLLRKPASVLSISL 254 (261)
Q Consensus 209 ~~~~~~~~~~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~ 254 (261)
|+++ +++.. .++.|.++|+.+++.+..+.... ....+++.+
T Consensus 325 g~~l----~va~~~~~~~VsVID~~t~kvv~~I~vg~-~P~~i~~~~ 366 (368)
T 1mda_H 325 GASD----NYANSAGTEVLDIYDAASDQDQSSVELDK-GPESLSVQN 366 (368)
T ss_dssp SSCE----EEEEETTTTEEEEEESSSCEEEEECCCCS-CCCEEECCC
T ss_pred CCEE----EEEccCCCCeEEEEECCCCcEEEEEECCC-CCCEEEeec
Confidence 9974 24455 58899999999999987776443 445666654
No 227
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.31 E-value=1.5e-09 Score=84.87 Aligned_cols=217 Identities=9% Similarity=0.026 Sum_probs=133.3
Q ss_pred EEEEEeeCCcceEEEEec-CCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcE
Q 024868 9 CGSWIKRPENVNLVVLGK-SSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGC 87 (261)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 87 (261)
.++++|+ +..+.++.. .++ .+..+|..+.+. ...+.-. + . ...+....+.+++.+.||++
T Consensus 141 ~~a~spD--Gk~lyVan~~~~~--------~VsVID~~t~~v------v~tI~v~-g-~-~~~~P~g~~~~~~~~~DG~~ 201 (386)
T 3sjl_D 141 MTSLTPD--GKTLLFYQFSPAP--------AVGVVDLEGKAF------KRMLDVP-D-C-YHIFPTAPDTFFMHCRDGSL 201 (386)
T ss_dssp GEEECTT--SSEEEEEECSSSC--------EEEEEETTTTEE------EEEEECC-S-E-EEEEEEETTEEEEEETTSCE
T ss_pred eEEEcCC--CCEEEEEEcCCCC--------eEEEEECCCCcE------EEEEECC-C-c-ceeecCCCceeEEECCCCCE
Confidence 3566665 244444433 245 788899888775 2222211 1 1 12222234556666778888
Q ss_pred EEEEEeC-CccccceeeeeCCCC-CCCCCeE-EEEEe-eCCcEEEEeccCCeEEEEEccCceE--Eeecc--c-------
Q 024868 88 KLFEVYG-GATDINLLAKKMPPL-QDAGPQK-CLSFS-VDGSRFAAGGVDGHLRIMHWPSLRI--ILDEP--K------- 152 (261)
Q Consensus 88 ~i~~~~~-~~~~~~~~~~~~~~~-~~~~~v~-~~~~s-~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~--~------- 152 (261)
.+.++.. ++. .... ...+ ....++. ...|. ++|++++.. .+|++++.|+.+... ..... .
T Consensus 202 ~~v~~~~~g~v-~~~~---~~~~~~~~~~~~~~~~~~~~dG~~~~vs-~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g 276 (386)
T 3sjl_D 202 AKVAFGTEGTP-EITH---TEVFHPEDEFLINHPAYSQKAGRLVWPT-YTGKIHQIDLSSGDAKFLPAVEALTEAERADG 276 (386)
T ss_dssp EEEECCSSSCC-EEEE---CCCCSCTTSCBCSCCEEETTTTEEEEEB-TTSEEEEEECTTSSCEECCCEESSCHHHHHTT
T ss_pred EEEECCCCCeE-EEee---cceeccccccccccceeEcCCCcEEEEe-CCCEEEEEECCCCcceeecceecccccccccc
Confidence 8888765 332 1100 0111 1112222 24665 678665544 689999999875542 11110 0
Q ss_pred -cCCceeEEEEcCCCCEEEEecC----------CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeC
Q 024868 153 -AHKSVLDMDFSLDSEFLATTST----------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG 221 (261)
Q Consensus 153 -~~~~v~~~~~s~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~ 221 (261)
..+....++++|+++.++.... .+.|.++|+.+++.+.++.... .+++++++||++..+ ..+..
T Consensus 277 ~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~l---y~tn~ 351 (386)
T 3sjl_D 277 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLL---YALST 351 (386)
T ss_dssp EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEE---EEEET
T ss_pred ccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEE---EEEcC
Confidence 0123455778999988877642 2579999999999999987653 488999999997311 24456
Q ss_pred CCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeC
Q 024868 222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLD 255 (261)
Q Consensus 222 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~d 255 (261)
.++.|.++|..+++.+..+... ....+|.+++|
T Consensus 352 ~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 352 GDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp TTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred CCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 7899999999999998777654 44467888887
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.31 E-value=1.4e-09 Score=92.26 Aligned_cols=185 Identities=12% Similarity=0.112 Sum_probs=123.5
Q ss_pred EEEECCCCCeEEEEecCCc-------------------EEEEEEeCCccccceeeeeCC--CCCCCCCeEEEEEeeCCc-
Q 024868 68 TIAVNPSGDDFVCSTTNGG-------------------CKLFEVYGGATDINLLAKKMP--PLQDAGPQKCLSFSVDGS- 125 (261)
Q Consensus 68 ~~~~~~~~~~l~~~~~dg~-------------------i~i~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~- 125 (261)
.++++|++..++.+..++. |..+|..+++........... ......+........+|+
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~ 318 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP 318 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence 5788898888888877653 899999988764433211000 011112232233344675
Q ss_pred --EEEEeccCCeEEEEEccCceEEeeccccC-------------------------------------C--ceeEEEEcC
Q 024868 126 --RFAAGGVDGHLRIMHWPSLRIILDEPKAH-------------------------------------K--SVLDMDFSL 164 (261)
Q Consensus 126 --~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-------------------------------------~--~v~~~~~s~ 164 (261)
.++.++.+|.++++|..+++.+....... + .-..++++|
T Consensus 319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp 398 (689)
T 1yiq_A 319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP 398 (689)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence 78888999999999999998763221100 0 012378888
Q ss_pred CCCEEEEecC---------------------------------------------CCcEEEEEccCCcEEEEEeecCCCc
Q 024868 165 DSEFLATTST---------------------------------------------DGSARIWKTEDGVAWTFLTRNSDEK 199 (261)
Q Consensus 165 ~~~~l~~~~~---------------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~ 199 (261)
+..++++... +|.|+.||+.+|+.+.+...+..
T Consensus 399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-- 476 (689)
T 1yiq_A 399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-- 476 (689)
T ss_dssp TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS--
T ss_pred CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC--
Confidence 8877776421 37799999999999888775432
Q ss_pred eEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCc-CeeEEEEeeCCCEE
Q 024868 200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK-PASVLSISLDGKYL 259 (261)
Q Consensus 200 v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~dg~~l 259 (261)
.....+...+.. ++.++.|+.++.||.++|+.+..+..... ...-+.|+.||+..
T Consensus 477 ~~~g~~~taggl-----vf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 477 FNGGTLSTAGNL-----VFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp CCCCEEEETTTE-----EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ccCccceECCCE-----EEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence 344456777776 56778999999999999999877765432 23457788898744
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.30 E-value=1.4e-09 Score=92.05 Aligned_cols=186 Identities=12% Similarity=0.104 Sum_probs=124.8
Q ss_pred eEEEECCCCCeEEEEecCC-------------------cEEEEEEeCCccccceeeeeCCC--CCCCCCeEEEEEeeCC-
Q 024868 67 MTIAVNPSGDDFVCSTTNG-------------------GCKLFEVYGGATDINLLAKKMPP--LQDAGPQKCLSFSVDG- 124 (261)
Q Consensus 67 ~~~~~~~~~~~l~~~~~dg-------------------~i~i~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~- 124 (261)
..++++|++..++.+..++ .|..+|..+++............ ........-+....+|
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~ 325 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK 325 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence 3578889888888776553 48888888887543322110000 0011222334445578
Q ss_pred --cEEEEeccCCeEEEEEccCceEEeeccccC----------C-ce------------------------eEEEEcCCCC
Q 024868 125 --SRFAAGGVDGHLRIMHWPSLRIILDEPKAH----------K-SV------------------------LDMDFSLDSE 167 (261)
Q Consensus 125 --~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~----------~-~v------------------------~~~~~s~~~~ 167 (261)
+.++.++.+|.++++|..+++.+....... + ++ ..++++|++.
T Consensus 326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~ 405 (677)
T 1kb0_A 326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG 405 (677)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence 678899999999999999998865443111 0 01 2578899888
Q ss_pred EEEEecC-------------------------------------------CCcEEEEEccCCcEEEEEeecCCCceEEEE
Q 024868 168 FLATTST-------------------------------------------DGSARIWKTEDGVAWTFLTRNSDEKIELCR 204 (261)
Q Consensus 168 ~l~~~~~-------------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 204 (261)
++++... .+.|..||+.+++.+.+..... ++....
T Consensus 406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~--~~~~g~ 483 (677)
T 1kb0_A 406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS--PWNGGT 483 (677)
T ss_dssp EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS--SCCCCE
T ss_pred EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCC--CCcCcc
Confidence 8776432 2779999999999988876432 355556
Q ss_pred EecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccC-cCeeEEEEeeCCCEE
Q 024868 205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-KPASVLSISLDGKYL 259 (261)
Q Consensus 205 ~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~s~dg~~l 259 (261)
+..++.. ++.++.|+.+++||.++++.+..+.... ....-+.+.++|+.+
T Consensus 484 ~~~~g~~-----v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~ 534 (677)
T 1kb0_A 484 LTTAGNV-----VFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY 534 (677)
T ss_dssp EEETTTE-----EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred eEeCCCE-----EEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEE
Confidence 7778876 4667889999999999999987776443 233456677888644
No 230
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.30 E-value=7.4e-10 Score=81.26 Aligned_cols=177 Identities=12% Similarity=0.023 Sum_probs=120.2
Q ss_pred ceEEEECCCCCeEEEEecCC--cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEe-ccCCeEEEEEcc
Q 024868 66 PMTIAVNPSGDDFVCSTTNG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWP 142 (261)
Q Consensus 66 v~~~~~~~~~~~l~~~~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~~~d~~ 142 (261)
...+.|+ ++..+.+.+.+| .|+++|+.+++...... + ..........+++..|... -.++.+.+||..
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~------l--~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~ 115 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE------L--GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIR 115 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE------C--CTTCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe------c--CCccceeEEEEeCCEEEEEEeeCCEEEEEECc
Confidence 3789998 666666666665 89999999887533221 1 2233333344445555544 368899999999
Q ss_pred CceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecC-C---CceEEEEEecCCCcceEEEEE
Q 024868 143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-D---EKIELCRFSKDGTKPFLFCTV 218 (261)
Q Consensus 143 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~---~~v~~~~~~p~~~~~~~~~~~ 218 (261)
+.+.+..+.... ....+++|++.|+.+..++.|.++|..+.+.+.++.... + ..++.+.|. +|+. .+
T Consensus 116 t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l-----ya 186 (262)
T 3nol_A 116 NLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEI-----FA 186 (262)
T ss_dssp TCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEE-----EE
T ss_pred cCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEE-----EE
Confidence 998876655432 223344677877777667889999999999888876532 1 124567786 6753 24
Q ss_pred eeCCCcEEEEEECCCCeEEeeeecc------------CcCeeEEEEeeCCCEEe
Q 024868 219 QRGDKALLAVYDISTWNKIGHKRLL------------RKPASVLSISLDGKYLA 260 (261)
Q Consensus 219 ~~~~d~~i~~~d~~~~~~~~~~~~~------------~~~v~~~~~s~dg~~la 260 (261)
..-.++.|.+.|.++++.+..+... ....+.++|+|+++.|.
T Consensus 187 n~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lf 240 (262)
T 3nol_A 187 NVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLF 240 (262)
T ss_dssp EETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEE
T ss_pred EEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEE
Confidence 5556779999999999988766542 12457899999887664
No 231
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.26 E-value=2.6e-10 Score=89.06 Aligned_cols=209 Identities=7% Similarity=-0.083 Sum_probs=119.4
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe----------cCCcEEEEEEeCCccccceeeeeCC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLAKKMP 107 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~i~~~~~~~~~~~~~~~~~~ 107 (261)
.+..+|..+.+. ...+.-...+ .+.++||+++++++. .++.|.+||..+.+....+......
T Consensus 47 ~vsvID~~t~~v------~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~ 118 (368)
T 1mda_H 47 ENWVSCAGCGVT------LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP 118 (368)
T ss_dssp EEEEEETTTTEE------EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC
T ss_pred eEEEEECCCCeE------EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcc
Confidence 677889888775 2233322334 799999999998886 3678999999988763332211000
Q ss_pred CCCCCCCeEEEEEeeCCcEEEEecc--CCeEEE--EEccCceEEeecccc-----CCceeEEEE----------------
Q 024868 108 PLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRI--MHWPSLRIILDEPKA-----HKSVLDMDF---------------- 162 (261)
Q Consensus 108 ~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~~--~d~~~~~~~~~~~~~-----~~~v~~~~~---------------- 162 (261)
..........++++|||++++++.. +..+.+ +|..+-+.+ ..... .+.-.-+.+
T Consensus 119 ~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i-~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 119 RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLT-KSASCFHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp SCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEE-ECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred ccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEE-ECCCceEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 0000123456999999999998864 456888 887651111 11000 000000111
Q ss_pred ---------------------cCCCCEEEEecCCCcEEEEEccCCc--EEEEEeec------CC---CceEEEEEecCCC
Q 024868 163 ---------------------SLDSEFLATTSTDGSARIWKTEDGV--AWTFLTRN------SD---EKIELCRFSKDGT 210 (261)
Q Consensus 163 ---------------------s~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~------~~---~~v~~~~~~p~~~ 210 (261)
++++..++..+. +.+.+.|+.+++ .+..+... .. .....++++||++
T Consensus 198 ~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~ 276 (368)
T 1mda_H 198 AAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD 276 (368)
T ss_dssp CCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT
T ss_pred cCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCC
Confidence 233333333334 667777765432 22222110 00 0112268999999
Q ss_pred cceEEEEEee-C-C-----CcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 211 KPFLFCTVQR-G-D-----KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 211 ~~~~~~~~~~-~-~-----d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
++|+ ... . . ++.+.++|+.+++.+..+.... ....++|+|||++++
T Consensus 277 ~lyV---~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~ 329 (368)
T 1mda_H 277 GIMI---LTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDN 329 (368)
T ss_dssp EEEE---EEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEE
T ss_pred EEEE---EeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEE
Confidence 8542 222 1 2 2345699999999887766443 678999999998543
No 232
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.21 E-value=1.5e-08 Score=75.20 Aligned_cols=198 Identities=9% Similarity=-0.010 Sum_probs=130.0
Q ss_pred eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE-ecCC
Q 024868 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TTNG 85 (261)
Q Consensus 7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg 85 (261)
...++|+++ ..+.++.+..+.. .|..+|+.+++. .....+..+ .....+++. ++.|..+ ..++
T Consensus 23 ~~Gl~~~~d---g~Lyvstg~~~~s------~v~~iD~~tg~v----~~~i~l~~~-~fgeGi~~~--g~~lyv~t~~~~ 86 (266)
T 2iwa_A 23 TQGLVYAEN---DTLFESTGLYGRS------SVRQVALQTGKV----ENIHKMDDS-YFGEGLTLL--NEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEECST---TEEEEEECSTTTC------EEEEEETTTCCE----EEEEECCTT-CCEEEEEEE--TTEEEEEETTCS
T ss_pred cccEEEeCC---CeEEEECCCCCCC------EEEEEECCCCCE----EEEEecCCC-cceEEEEEe--CCEEEEEEecCC
Confidence 356777764 3455544432222 899999998875 112223322 122345554 5555544 4578
Q ss_pred cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC-----CceeEE
Q 024868 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-----KSVLDM 160 (261)
Q Consensus 86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~v~~~ 160 (261)
.+.++|..+.+....+. .. .. ....+++||+.++++..++.|.++|..+.+.+..+.-.. ..+..+
T Consensus 87 ~v~viD~~t~~v~~~i~---~g--~~----~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nel 157 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFT---HQ--MK----DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNEL 157 (266)
T ss_dssp EEEEEETTTTEEEEEEE---CC--SS----SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred EEEEEECCCCcEEEEEE---CC--CC----CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeE
Confidence 99999998776532221 11 01 124467788888777778899999999887665554322 135678
Q ss_pred EEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecC------------CCceEEEEEecCCCcceEEEEEeeCCCcEEEE
Q 024868 161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS------------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAV 228 (261)
Q Consensus 161 ~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------------~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~ 228 (261)
.|. +|+..+....++.|.+.|..+++.+..+.... ......++|+|+++.+ .+++...+.+.+
T Consensus 158 e~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l----fVTgk~~~~v~~ 232 (266)
T 2iwa_A 158 EYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRI----FVTGKLWPKLFE 232 (266)
T ss_dssp EEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEE----EEEETTCSEEEE
T ss_pred EEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEE----EEECCCCCeEEE
Confidence 888 77666666678899999999999998886421 1236899999999885 477888889999
Q ss_pred EECCCC
Q 024868 229 YDISTW 234 (261)
Q Consensus 229 ~d~~~~ 234 (261)
.++...
T Consensus 233 i~l~~~ 238 (266)
T 2iwa_A 233 IKLHLV 238 (266)
T ss_dssp EEEEEC
T ss_pred EEEecc
Confidence 888653
No 233
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.18 E-value=1.4e-09 Score=84.70 Aligned_cols=191 Identities=9% Similarity=0.042 Sum_probs=115.0
Q ss_pred ceeeEEEEEeeCCcceEEEEecC-----CCCCCCCCceEEEEEcCCCCceecCCeEEeeec----CCCCCceEEEECCCC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKS-----SRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD----ESEGDPMTIAVNPSG 75 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~ 75 (261)
..+.++++.++ .++.++... .. +|+.||+.++++. ....+. .+...+..+++++++
T Consensus 67 ~~p~gv~~d~~---g~L~v~D~g~~~~~~~--------~i~~~d~~tg~~~----~~~~~~~~~~~~~~~~~~v~vd~~~ 131 (343)
T 2qe8_A 67 DTVLGIKSDGN---GIVWMLDNGNQSKSVP--------KLVAWDTLNNQLS----RVIYLPPPITLSNSFVNDLAVDLIH 131 (343)
T ss_dssp SCEEEEEECSS---SEEEEEECHHHHTSCC--------EEEEEETTTTEEE----EEEECCTTTSCTTCCCCEEEEETTT
T ss_pred eEeeEEEEcCC---CcEEEEcCCCCcCCCC--------eEEEEECCCCeEE----EEEECChhhcccccccceEEEecCC
Confidence 45778888774 445554432 34 8899998876641 122222 123456899999865
Q ss_pred CeE-EEEe---cCCcEEEEEEeCCccccceeeee--CC-----------CC---C-------CCCCeEEEEEeeCCcEEE
Q 024868 76 DDF-VCST---TNGGCKLFEVYGGATDINLLAKK--MP-----------PL---Q-------DAGPQKCLSFSVDGSRFA 128 (261)
Q Consensus 76 ~~l-~~~~---~dg~i~i~~~~~~~~~~~~~~~~--~~-----------~~---~-------~~~~v~~~~~s~~~~~l~ 128 (261)
..+ ++-. .++.|.+||+.+++.... .... .. .+ . ....+..++|+||++.|+
T Consensus 132 g~~yvtd~~~~~~~~i~v~d~~~g~~~r~-~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly 210 (343)
T 2qe8_A 132 NFVYISDPAPDDKAALIRVDLQTGLAARV-LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLY 210 (343)
T ss_dssp TEEEEEECCSGGGCEEEEEETTTCCEEEE-CTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEE
T ss_pred CEEEEEcCccCCCCeEEEEECCCCCEEEE-ecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEE
Confidence 555 4433 567899999876543111 1000 00 00 0 012468899999999888
Q ss_pred EeccCC-eEEEEEccC---ce----EEe---eccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC
Q 024868 129 AGGVDG-HLRIMHWPS---LR----IIL---DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD 197 (261)
Q Consensus 129 ~~~~d~-~i~~~d~~~---~~----~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 197 (261)
++...+ .++.++... +. ... ....+......++++++|+++++...++.|.+||..+++..........
T Consensus 211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~ 290 (343)
T 2qe8_A 211 LSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKL 290 (343)
T ss_dssp EEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGG
T ss_pred EEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCce
Confidence 876555 555555321 10 000 0111223467799999999999988899999999866764433332222
Q ss_pred CceEEEEEecCCCc
Q 024868 198 EKIELCRFSKDGTK 211 (261)
Q Consensus 198 ~~v~~~~~~p~~~~ 211 (261)
..+.+++|.++++.
T Consensus 291 ~~p~~va~~~~g~l 304 (343)
T 2qe8_A 291 SWTDSFNFGSDGYL 304 (343)
T ss_dssp SCEEEEEECTTSCE
T ss_pred ecCCeeEECCCCcE
Confidence 35889999999875
No 234
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.15 E-value=6.8e-08 Score=73.82 Aligned_cols=219 Identities=12% Similarity=0.028 Sum_probs=126.3
Q ss_pred eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC-
Q 024868 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG- 85 (261)
Q Consensus 7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg- 85 (261)
...++|.++ .+++++....+ +|+.+|+.+... ..+. ....+..+++.++|+.+++.....
T Consensus 34 pegia~~~~---g~lyv~d~~~~--------~I~~~d~~g~~~-------~~~~-~~~~p~gia~~~dG~l~vad~~~~~ 94 (306)
T 2p4o_A 34 LENLASAPD---GTIFVTNHEVG--------EIVSITPDGNQQ-------IHAT-VEGKVSGLAFTSNGDLVATGWNADS 94 (306)
T ss_dssp EEEEEECTT---SCEEEEETTTT--------EEEEECTTCCEE-------EEEE-CSSEEEEEEECTTSCEEEEEECTTS
T ss_pred cceEEECCC---CCEEEEeCCCC--------eEEEECCCCceE-------EEEe-CCCCceeEEEcCCCcEEEEeccCCc
Confidence 456777763 44666655566 899999876432 1111 234688999999998655543332
Q ss_pred -cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE-Eeec---------cccC
Q 024868 86 -GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-ILDE---------PKAH 154 (261)
Q Consensus 86 -~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~---------~~~~ 154 (261)
.|..++..++... ... . .........++..+++..+++-..++.|+.+|...++. +... ....
T Consensus 95 ~~v~~~d~~~g~~~-~~~-~----~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~ 168 (306)
T 2p4o_A 95 IPVVSLVKSDGTVE-TLL-T----LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF 168 (306)
T ss_dssp CEEEEEECTTSCEE-EEE-E----CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred ceEEEEcCCCCeEE-EEE-e----CCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC
Confidence 3555665554421 111 1 11122334555555555555554688899999765431 2100 0111
Q ss_pred CceeEEEEcCCCCEEEE-ecCCCcEEEEEccC-CcE--EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEE
Q 024868 155 KSVLDMDFSLDSEFLAT-TSTDGSARIWKTED-GVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD 230 (261)
Q Consensus 155 ~~v~~~~~s~~~~~l~~-~~~d~~i~iwd~~~-~~~--~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d 230 (261)
.....+ +|+++.|+. -...+.|..||+.. ++. ...+.. .. ....++++++|+. .++....+.|.++|
T Consensus 169 ~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~-~P~gi~vd~dG~l-----~va~~~~~~V~~~~ 239 (306)
T 2p4o_A 169 PAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QT-NIDDFAFDVEGNL-----YGATHIYNSVVRIA 239 (306)
T ss_dssp CSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SC-CCSSEEEBTTCCE-----EEECBTTCCEEEEC
T ss_pred CcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cC-CCCCeEECCCCCE-----EEEeCCCCeEEEEC
Confidence 234455 888876654 45578899999874 332 122221 12 3567899999975 34444567899999
Q ss_pred CCCCeEEe--eeeccCcCeeEEEEe---eCCCEEe
Q 024868 231 ISTWNKIG--HKRLLRKPASVLSIS---LDGKYLA 260 (261)
Q Consensus 231 ~~~~~~~~--~~~~~~~~v~~~~~s---~dg~~la 260 (261)
.. ++... ..........+++|. ||++.|.
T Consensus 240 ~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~Ly 273 (306)
T 2p4o_A 240 PD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIY 273 (306)
T ss_dssp TT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEE
T ss_pred CC-CCEEEEeecccccCCceEEEEecccCCCCEEE
Confidence 75 55432 222223567899999 8987664
No 235
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.15 E-value=5.8e-09 Score=76.56 Aligned_cols=176 Identities=9% Similarity=-0.031 Sum_probs=118.7
Q ss_pred ceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEE-eccCCeEEEEEccCc
Q 024868 66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWPSL 144 (261)
Q Consensus 66 v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~~~d~~~~ 144 (261)
...+.|+ ++.++.+.+.+|.|+++|+.+++..... +. .........++++.|.. .-.++.+.+||..+.
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-------l~--~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl 126 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-------RL--GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPP 126 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-------EC--TTCCEEEEEECSSCEEEEESSSCEEEEEETTTT
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-------CC--CCcceeEEEEeCCEEEEEEccCCEEEEEECCcC
Confidence 3688887 3555567777889999999998763332 11 22333223444444444 447889999999999
Q ss_pred eEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC----CceEEEEEecCCCcceEEEEEee
Q 024868 145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD----EKIELCRFSKDGTKPFLFCTVQR 220 (261)
Q Consensus 145 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~~~~~~~~~ 220 (261)
+.+..+..... -..++ +|++.|+.+..++.|.++|..+.+.+.++..... ..++.+.|. +|+. .+..
T Consensus 127 ~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~l-----yanv 197 (268)
T 3nok_A 127 QRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVI-----YANI 197 (268)
T ss_dssp EEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE-----EEEE
T ss_pred cEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEE-----EEEE
Confidence 88766654322 23343 5678777777789999999999998888764321 135677776 6753 2445
Q ss_pred CCCcEEEEEECCCCeEEeeeecc-------------CcCeeEEEEeeCCCEEe
Q 024868 221 GDKALLAVYDISTWNKIGHKRLL-------------RKPASVLSISLDGKYLA 260 (261)
Q Consensus 221 ~~d~~i~~~d~~~~~~~~~~~~~-------------~~~v~~~~~s~dg~~la 260 (261)
-.++.|.+.|.++++.+..+... ..-.+.++++|+++.|.
T Consensus 198 w~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlf 250 (268)
T 3nok_A 198 WHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIF 250 (268)
T ss_dssp TTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEE
T ss_pred CCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEE
Confidence 55679999999999987666532 13568899999876553
No 236
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.15 E-value=1.8e-08 Score=73.26 Aligned_cols=178 Identities=7% Similarity=-0.032 Sum_probs=116.8
Q ss_pred CceEEEECCCCCeEEEEecC--CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEE-eccCCeEEEEEc
Q 024868 65 DPMTIAVNPSGDDFVCSTTN--GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHW 141 (261)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d--g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~~~d~ 141 (261)
-...+.|++ +..+.+.+.+ ..|+.+|+.+++..... .-..........+++..|.. .-.++.+.+||.
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~--------~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~ 92 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA--------EVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDL 92 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE--------ECCTTCCEEEEEEETTEEEEEESSSSEEEEEET
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE--------eCCCCcceeEEEEeCCEEEEEEeeCCEEEEEEC
Confidence 356899986 4455555554 48999999988753222 11123333333444444444 447899999999
Q ss_pred cCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC----CceEEEEEecCCCcceEEEE
Q 024868 142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD----EKIELCRFSKDGTKPFLFCT 217 (261)
Q Consensus 142 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~~~~~~ 217 (261)
.+.+.+..+..... -..+ +++++.|+.+..++.|.++|..+.+.+.++..... ..++.+.|. +|+. .
T Consensus 93 ~tl~~~~ti~~~~~-Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l-----y 163 (243)
T 3mbr_X 93 ATLTPRARFRYPGE-GWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL-----L 163 (243)
T ss_dssp TTTEEEEEEECSSC-CCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE-----E
T ss_pred CcCcEEEEEeCCCC-ceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE-----E
Confidence 99988766654332 2344 45677777666788999999999998888764321 135667765 6653 2
Q ss_pred EeeCCCcEEEEEECCCCeEEeeeecc-------------CcCeeEEEEeeCCCEEe
Q 024868 218 VQRGDKALLAVYDISTWNKIGHKRLL-------------RKPASVLSISLDGKYLA 260 (261)
Q Consensus 218 ~~~~~d~~i~~~d~~~~~~~~~~~~~-------------~~~v~~~~~s~dg~~la 260 (261)
+..-.+..|.+.|.++++.+..+... ..-.+.++++|+++.|.
T Consensus 164 anvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lf 219 (243)
T 3mbr_X 164 ANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLF 219 (243)
T ss_dssp EEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEE
T ss_pred EEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEE
Confidence 44445668999999999987766522 12457899999877654
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.13 E-value=1.6e-09 Score=88.34 Aligned_cols=171 Identities=10% Similarity=0.064 Sum_probs=121.1
Q ss_pred CCCeEEEEec-CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEE-e-eCCcEEEEec------------------c
Q 024868 74 SGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF-S-VDGSRFAAGG------------------V 132 (261)
Q Consensus 74 ~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s-~~~~~l~~~~------------------~ 132 (261)
||+++..... ++.|.+.|+.+.+....+ .+........+++ + |+++++++++ .
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii------~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~ 173 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAIL------EIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY 173 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEE------ECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEE------eCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccccccc
Confidence 8888877665 467999999887752211 2333345778887 5 8999988884 2
Q ss_pred CCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCC------------------------------------
Q 024868 133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG------------------------------------ 176 (261)
Q Consensus 133 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~------------------------------------ 176 (261)
++.+.++|..+.+...++.-.. ....++++|+|+++++.+.+.
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~ 252 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 252 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred CceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence 4579999999988877665433 457788999999998877543
Q ss_pred --cEEEEEccC--CcE-EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe------------EEee
Q 024868 177 --SARIWKTED--GVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN------------KIGH 239 (261)
Q Consensus 177 --~i~iwd~~~--~~~-~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~------------~~~~ 239 (261)
.|.+.|.++ ++. +..+.... ...++.++|||+++ ++++..+.+|.++|+.+.+ ....
T Consensus 253 i~~V~VID~~~~~~~~~~~~Ipvg~--~PhGv~~sPDGk~v----~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~ 326 (595)
T 1fwx_A 253 LNGVKVVDGRKEASSLFTRYIPIAN--NPHGCNMAPDKKHL----CVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 326 (595)
T ss_dssp ETTEEEEECSGGGCCSSEEEEEEES--SCCCEEECTTSSEE----EEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred ECcEEEEeCcccCCceeEEEEecCC--CceEEEEcCCCCEE----EEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence 367777776 444 45555433 36789999999984 4677788899999998653 2222
Q ss_pred eeccCcCeeEEEEeeCCCEE
Q 024868 240 KRLLRKPASVLSISLDGKYL 259 (261)
Q Consensus 240 ~~~~~~~v~~~~~s~dg~~l 259 (261)
. ..+.....++|+||| ++
T Consensus 327 v-~vG~gP~h~aF~~dG-~a 344 (595)
T 1fwx_A 327 P-ELGLGPLHTAFDGRG-NA 344 (595)
T ss_dssp C-BCCSCEEEEEECTTS-EE
T ss_pred c-CCCCCcceEEECCCC-eE
Confidence 2 334567899999999 53
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.13 E-value=7.4e-09 Score=79.79 Aligned_cols=202 Identities=11% Similarity=0.042 Sum_probs=128.5
Q ss_pred EEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccc
Q 024868 21 LVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN 100 (261)
Q Consensus 21 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 100 (261)
.+.+|..++ .++.+|.. +.. ......+...+.++...+++. +..++.++.|..+|.. +.....
T Consensus 109 ~l~v~t~~~--------~l~~~d~~-g~~------~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~ 171 (330)
T 3hxj_A 109 ILYVTSMDG--------HLYAINTD-GTE------KWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWR 171 (330)
T ss_dssp EEEEECTTS--------EEEEECTT-SCE------EEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEE
T ss_pred EEEEEecCC--------EEEEEcCC-CCE------EEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEE
Confidence 345555566 78888887 443 222233344566677777776 5556777889999887 443111
Q ss_pred eeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEE
Q 024868 101 LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI 180 (261)
Q Consensus 101 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i 180 (261)
.. .....+.++...+++...+ ++ +.+..+| .+++...........+.++...++|.+ ..++.++.+..
T Consensus 172 ~~-------~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~~gl~~ 239 (330)
T 3hxj_A 172 FK-------TNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTI-YVTSLDGHLYA 239 (330)
T ss_dssp EE-------CSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCE-EEEETTTEEEE
T ss_pred Ee-------cCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeE-EEEcCCCeEEE
Confidence 11 1123455666767776544 43 7799999 777766665555556888888888764 44556778888
Q ss_pred EEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 181 wd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
+|. +++.+..+..... .+..+.+.+++.. ..++.++.|..+|. +++.+.........+.++...++|+..+
T Consensus 240 ~~~-~g~~~~~~~~~~~-~~~~~~~~~~g~l------~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~ 310 (330)
T 3hxj_A 240 INP-DGTEKWRFKTGKR-IESSPVIGNTDTI------YFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYF 310 (330)
T ss_dssp ECT-TSCEEEEEECSSC-CCSCCEECTTSCE------EEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEE
T ss_pred ECC-CCCEeEEeeCCCC-ccccceEcCCCeE------EEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEE
Confidence 874 5666666554332 2445566667763 66777888999996 6776655555556677777777877543
No 239
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.09 E-value=1.8e-09 Score=85.68 Aligned_cols=133 Identities=11% Similarity=0.007 Sum_probs=97.7
Q ss_pred eCCcEEEEecc-C----CeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEec----------CCCcEEEEEccCC
Q 024868 122 VDGSRFAAGGV-D----GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS----------TDGSARIWKTEDG 186 (261)
Q Consensus 122 ~~~~~l~~~~~-d----~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~d~~i~iwd~~~~ 186 (261)
|+++.+++... + +.|.++|..+++.+..+.....+ .+.++|||++++.+. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 46776666543 2 68999999999988777665555 899999999888775 3678999999999
Q ss_pred cEEEEEeec-C-----CCceEEEEEecCCCcceEEEEEeeC-CCcEEEEEECCCCeEEeeeeccCc-------CeeEEEE
Q 024868 187 VAWTFLTRN-S-----DEKIELCRFSKDGTKPFLFCTVQRG-DKALLAVYDISTWNKIGHKRLLRK-------PASVLSI 252 (261)
Q Consensus 187 ~~~~~~~~~-~-----~~~v~~~~~~p~~~~~~~~~~~~~~-~d~~i~~~d~~~~~~~~~~~~~~~-------~v~~~~~ 252 (261)
+.+.++... . ......+.|+|||+++| ++.. .++.|.+.|+.+++.+..+..... .-.-+.+
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~ly----V~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLL----FYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMN 235 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEE----EEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEE----EEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEE
Confidence 998887643 0 12356789999999843 2232 367899999999998876664221 1223678
Q ss_pred eeCCCEEe
Q 024868 253 SLDGKYLA 260 (261)
Q Consensus 253 s~dg~~la 260 (261)
++||++++
T Consensus 236 ~~dG~~~~ 243 (426)
T 3c75_H 236 CRDGSLAR 243 (426)
T ss_dssp ETTSSEEE
T ss_pred cCCCCEEE
Confidence 88888764
No 240
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=99.08 E-value=5.5e-07 Score=66.39 Aligned_cols=205 Identities=10% Similarity=0.049 Sum_probs=127.8
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 84 (261)
..+..++|.|+ ...+.++...++ .|+.+|.. +.+ .....+.+. .....+++.+++.++++.-.+
T Consensus 27 ~~lSGla~~~~--~~~L~aV~d~~~--------~I~~ld~~-g~v----~~~i~l~g~-~D~EGIa~~~~g~~~vs~E~~ 90 (255)
T 3qqz_A 27 NNISSLTWSAQ--SNTLFSTINKPA--------AIVEMTTN-GDL----IRTIPLDFV-KDLETIEYIGDNQFVISDERD 90 (255)
T ss_dssp SCEEEEEEETT--TTEEEEEEETTE--------EEEEEETT-CCE----EEEEECSSC-SSEEEEEECSTTEEEEEETTT
T ss_pred cCcceeEEeCC--CCEEEEEECCCC--------eEEEEeCC-CCE----EEEEecCCC-CChHHeEEeCCCEEEEEECCC
Confidence 35788999876 366777777777 89999998 443 222223332 568899999988766665567
Q ss_pred CcEEEEEEeCCccccceeeeeC--CCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC---ce--EEeec-----cc
Q 024868 85 GGCKLFEVYGGATDINLLAKKM--PPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS---LR--IILDE-----PK 152 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~---~~--~~~~~-----~~ 152 (261)
+.+.++++.............. ...........++|+|+++.|+++.......+|.+.. .. .+... ..
T Consensus 91 ~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~ 170 (255)
T 3qqz_A 91 YAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQF 170 (255)
T ss_dssp TEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTC
T ss_pred CcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccc
Confidence 7899999876553111111111 1123345679999999987777766554445555431 11 11100 01
Q ss_pred cCCceeEEEEcCC-CCEEEEecCCCcEEEEEccCCcEEEEEeecCC--------CceEEEEEecCCCcceEEEEEeeCCC
Q 024868 153 AHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSD--------EKIELCRFSKDGTKPFLFCTVQRGDK 223 (261)
Q Consensus 153 ~~~~v~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------~~v~~~~~~p~~~~~~~~~~~~~~~d 223 (261)
.-..+.+++++|. +++++....+..+.++|.+ |+.+..+.-..+ .....++|.++|+. ...++.
T Consensus 171 ~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l------yIvsE~ 243 (255)
T 3qqz_A 171 TLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI------YIVSEP 243 (255)
T ss_dssp CSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE------EEEETT
T ss_pred ccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCE------EEEcCC
Confidence 1235789999995 5556666677889999965 666666553321 14789999999984 334566
Q ss_pred cEEEEEECC
Q 024868 224 ALLAVYDIS 232 (261)
Q Consensus 224 ~~i~~~d~~ 232 (261)
+.++.|.-.
T Consensus 244 n~~y~f~~~ 252 (255)
T 3qqz_A 244 NRFYRFTPQ 252 (255)
T ss_dssp TEEEEEEC-
T ss_pred ceEEEEEec
Confidence 677777643
No 241
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.04 E-value=5.4e-07 Score=67.34 Aligned_cols=186 Identities=6% Similarity=-0.041 Sum_probs=111.0
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeE
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK 116 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~ 116 (261)
.|+.++.++........ ...+......+..++|+++++.|+.+. ..+.|..++..+... .... ........
T Consensus 11 ~I~~~~~~g~~~~~~~~-~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~------~~~~~~p~ 82 (267)
T 1npe_A 11 KIERLPLERNTMKKTEA-KAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTII------RQDLGSPE 82 (267)
T ss_dssp EEEEEEESSSCBCGGGC-EEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEE------CTTCCCEE
T ss_pred eEEEEEecCcccccccc-eeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEE------ECCCCCcc
Confidence 67777766544211000 001111123578999999776666554 467899999876542 1111 01124678
Q ss_pred EEEEeeCCcEEEEe-ccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC---CCcEEEEEccCCcEEEEE
Q 024868 117 CLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGVAWTFL 192 (261)
Q Consensus 117 ~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~ 192 (261)
.++++|++..|+.+ ...+.|.+++...................++++|++..|+.+.. .+.|..+++.. +....+
T Consensus 83 ~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~ 161 (267)
T 1npe_A 83 GIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRIL 161 (267)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEE
T ss_pred EEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEE
Confidence 99999976555544 45678999998643322112222245789999997665554443 36788888764 333333
Q ss_pred eecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868 193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (261)
Q Consensus 193 ~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~ 236 (261)
..........++++|++..+| ++....+.|.++|......
T Consensus 162 ~~~~~~~P~gia~d~~~~~ly----v~d~~~~~I~~~~~~g~~~ 201 (267)
T 1npe_A 162 AQDNLGLPNGLTFDAFSSQLC----WVDAGTHRAECLNPAQPGR 201 (267)
T ss_dssp ECTTCSCEEEEEEETTTTEEE----EEETTTTEEEEEETTEEEE
T ss_pred EECCCCCCcEEEEcCCCCEEE----EEECCCCEEEEEecCCCce
Confidence 212223478999999988743 4556677999999975443
No 242
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.02 E-value=6.3e-08 Score=76.15 Aligned_cols=157 Identities=11% Similarity=0.023 Sum_probs=95.3
Q ss_pred CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccCCeEEEEEccCceEEeeccc
Q 024868 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPK 152 (261)
Q Consensus 75 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 152 (261)
+..++.+..++.+..+|..+++..................+..+.-.| .+..+++++.++.+..+|..+++.+.....
T Consensus 188 ~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~ 267 (376)
T 3q7m_A 188 FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL 267 (376)
T ss_dssp TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC
Confidence 346777778889999998877653332111000000000000000111 245677777889999999999988765442
Q ss_pred cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868 153 AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (261)
Q Consensus 153 ~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~ 232 (261)
.....+.. ++..++.++.++.+..+|..+++.+.............+... +.. ++.++.+|.++++|.+
T Consensus 268 --~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~-----l~v~~~~g~l~~~d~~ 336 (376)
T 3q7m_A 268 --GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGN-----LVVGDSEGYLHWINVE 336 (376)
T ss_dssp --CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTE-----EEEECTTSEEEEEETT
T ss_pred --CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCE-----EEEEeCCCeEEEEECC
Confidence 23344433 366777778889999999999998776652222123333332 334 4667788999999999
Q ss_pred CCeEEeeeec
Q 024868 233 TWNKIGHKRL 242 (261)
Q Consensus 233 ~~~~~~~~~~ 242 (261)
+++.+.....
T Consensus 337 tG~~~~~~~~ 346 (376)
T 3q7m_A 337 DGRFVAQQKV 346 (376)
T ss_dssp TCCEEEEEEC
T ss_pred CCcEEEEEec
Confidence 9998766554
No 243
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.02 E-value=1.1e-11 Score=97.43 Aligned_cols=147 Identities=14% Similarity=0.037 Sum_probs=78.0
Q ss_pred CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecccc
Q 024868 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153 (261)
Q Consensus 74 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 153 (261)
++..+++++.||.|+.||..+++...+... +.+.+..+..+++.+++++.|+.|+.||..+++.+.....+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~ 78 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE---------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT 78 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC---------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC---------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc
Confidence 577899999999999999998876443321 22333334567778888889999999999888775544322
Q ss_pred CC-cee-EEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEEC
Q 024868 154 HK-SVL-DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231 (261)
Q Consensus 154 ~~-~v~-~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~ 231 (261)
.. .+. ...+. ++..+++++.++.++.||.++|+.+..+..+. ...++|++.. ++.++.++.|+.||.
T Consensus 79 ~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~~~-----v~~~~~dg~v~a~d~ 147 (369)
T 2hz6_A 79 IPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPSTSL-----LYLGRTEYTITMYDT 147 (369)
T ss_dssp HHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------------EEEEEEEEEEECCCS
T ss_pred CccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccCCE-----EEEEecCCEEEEEEC
Confidence 11 111 11111 34567788889999999999999887776432 1345677776 566778899999999
Q ss_pred CCCeEEeee
Q 024868 232 STWNKIGHK 240 (261)
Q Consensus 232 ~~~~~~~~~ 240 (261)
++|+.+..+
T Consensus 148 ~tG~~~W~~ 156 (369)
T 2hz6_A 148 KTRELRWNA 156 (369)
T ss_dssp SSSSCCCEE
T ss_pred CCCCEEEeE
Confidence 998865443
No 244
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=99.01 E-value=1.9e-08 Score=86.23 Aligned_cols=156 Identities=11% Similarity=0.029 Sum_probs=95.1
Q ss_pred CceEEEEC-CCCCeEEEEec-CC----cEEEEEEeCC-ccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC----
Q 024868 65 DPMTIAVN-PSGDDFVCSTT-NG----GCKLFEVYGG-ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---- 133 (261)
Q Consensus 65 ~v~~~~~~-~~~~~l~~~~~-dg----~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---- 133 (261)
.+...+|| |||++|+.+.. +| +|+++|+.++ ......+ ......+.|+|||+.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~---------~~~~~~~~WspDg~~l~y~~~d~~~~ 245 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV---------SGTNGEIVWGPDHTSLFYVTKDETLR 245 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE---------EEECSCCEECSSTTEEEEEEECTTCC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc---------cCceeeEEEecCCCEEEEEEECCCCC
Confidence 57789999 99999886544 23 4999999887 4211101 0113468899999888877654
Q ss_pred -CeEEEEEccCceE--Eeecc-ccCCceeEEEEcCCCCEEEEecC---CCcEEEEEccCCc-EE--EEEeecCCCceEEE
Q 024868 134 -GHLRIMHWPSLRI--ILDEP-KAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGV-AW--TFLTRNSDEKIELC 203 (261)
Q Consensus 134 -~~i~~~d~~~~~~--~~~~~-~~~~~v~~~~~s~~~~~l~~~~~---d~~i~iwd~~~~~-~~--~~~~~~~~~~v~~~ 203 (261)
..|+++++.++.. ...+. ........+.|||||++|+..+. ...|+++|+.++. .. ..+.........++
T Consensus 246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~ 325 (751)
T 2xe4_A 246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDV 325 (751)
T ss_dssp EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEE
T ss_pred CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEE
Confidence 2588888876531 11111 22234568899999998886552 3468889988752 22 33433333345555
Q ss_pred EEecCCCcceEEEEEeeC---CCcEEEEEECCC
Q 024868 204 RFSKDGTKPFLFCTVQRG---DKALLAVYDIST 233 (261)
Q Consensus 204 ~~~p~~~~~~~~~~~~~~---~d~~i~~~d~~~ 233 (261)
.|+. |+.+++ .+.. ....|..+|+.+
T Consensus 326 ~~~~-g~~l~~---~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 326 QMHG-TSHLVI---LTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp EEET-TTEEEE---EECTTTCTTCEEEEEETTS
T ss_pred eeee-CCEEEE---EeCCCCCCCcEEEEEcCCC
Confidence 5543 555321 2221 235788888865
No 245
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.98 E-value=2.3e-07 Score=71.37 Aligned_cols=191 Identities=11% Similarity=0.055 Sum_probs=114.9
Q ss_pred ecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCC--------------CCCCCCeEEEEEee-C
Q 024868 59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP--------------LQDAGPQKCLSFSV-D 123 (261)
Q Consensus 59 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~--------------~~~~~~v~~~~~s~-~ 123 (261)
+++.-....+++|.++++.++++..++.|..|+..++.... ....... ......+..+++++ +
T Consensus 14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~ 91 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD--FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN 91 (322)
T ss_dssp EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE--EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE--EecccccccccccccccchhccccCCCCceEEEcCCC
Confidence 44333456789999999878888888889999876543211 1000000 00113578899998 6
Q ss_pred CcEEEEeccCCeEEEEEccCceEEeecc--c--cCCceeEEEEcC-CCCEEEEecC-----------------CCcEEEE
Q 024868 124 GSRFAAGGVDGHLRIMHWPSLRIILDEP--K--AHKSVLDMDFSL-DSEFLATTST-----------------DGSARIW 181 (261)
Q Consensus 124 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~--~~~~v~~~~~s~-~~~~l~~~~~-----------------d~~i~iw 181 (261)
++++++ ...+.+..+|..++....... . .......+++.| +|++.++... ++.|..|
T Consensus 92 g~l~v~-d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 170 (322)
T 2fp8_A 92 NQLYIV-DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY 170 (322)
T ss_dssp TEEEEE-ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred CcEEEE-ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence 655544 344558888876553211111 1 112467899999 9987766432 3678888
Q ss_pred EccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC---eEEeeeeccCcCeeEEEEeeCCCE
Q 024868 182 KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW---NKIGHKRLLRKPASVLSISLDGKY 258 (261)
Q Consensus 182 d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~v~~~~~s~dg~~ 258 (261)
|..+++....... .. ....++|+|+|+.+| ++....+.|++|++... +.. .+....+ ...++++++|++
T Consensus 171 d~~~~~~~~~~~~-~~-~p~gia~~~dg~~ly----v~d~~~~~I~~~~~~~~~~~~~~-~~~~~~g-P~gi~~d~~G~l 242 (322)
T 2fp8_A 171 DPSTKETTLLLKE-LH-VPGGAEVSADSSFVL----VAEFLSHQIVKYWLEGPKKGTAE-VLVKIPN-PGNIKRNADGHF 242 (322)
T ss_dssp ETTTTEEEEEEEE-ES-CCCEEEECTTSSEEE----EEEGGGTEEEEEESSSTTTTCEE-EEEECSS-EEEEEECTTSCE
T ss_pred eCCCCEEEEeccC-Cc-cCcceEECCCCCEEE----EEeCCCCeEEEEECCCCcCCccc-eEEeCCC-CCCeEECCCCCE
Confidence 9877765333222 12 367899999998632 34445678999998742 211 1111223 677888888875
Q ss_pred Ee
Q 024868 259 LA 260 (261)
Q Consensus 259 la 260 (261)
.+
T Consensus 243 ~v 244 (322)
T 2fp8_A 243 WV 244 (322)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 246
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.97 E-value=3.5e-07 Score=66.56 Aligned_cols=177 Identities=10% Similarity=0.091 Sum_probs=114.0
Q ss_pred eEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEE-EecCCc
Q 024868 8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC-STTNGG 86 (261)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~ 86 (261)
..+.|.+ ..+..+++..+.+ .|..+|+.+++. .....+.. ........+.++.|.. ...++.
T Consensus 24 qGL~~~~----~~LyestG~~g~S------~v~~vD~~tgkv----~~~~~l~~---~~fgeGi~~~~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 24 EGLFYLR----GHLYESTGETGRS------SVRKVDLETGRI----LQRAEVPP---PYFGAGIVAWRDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEET----TEEEEEECCTTSC------EEEEEETTTCCE----EEEEECCT---TCCEEEEEEETTEEEEEESSSSE
T ss_pred ccEEEEC----CEEEEECCCCCCc------eEEEEECCCCCE----EEEEeCCC---CcceeEEEEeCCEEEEEEeeCCE
Confidence 3455554 4566666666555 899999998876 22223332 2322323333455544 445789
Q ss_pred EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC-----CceeEEE
Q 024868 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-----KSVLDMD 161 (261)
Q Consensus 87 i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~v~~~~ 161 (261)
+.+||..+.+....+. ... ....+.++++.|+.+..++.|.++|..+.+.+..+.-.. ..+..+.
T Consensus 87 v~v~D~~tl~~~~ti~--------~~~--~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe 156 (243)
T 3mbr_X 87 GFVYDLATLTPRARFR--------YPG--EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE 156 (243)
T ss_dssp EEEEETTTTEEEEEEE--------CSS--CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EEEEECCcCcEEEEEe--------CCC--CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeE
Confidence 9999998876532221 111 123445677777777778899999999887765544321 2355677
Q ss_pred EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeec------------CCCceEEEEEecCCCcc
Q 024868 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN------------SDEKIELCRFSKDGTKP 212 (261)
Q Consensus 162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~v~~~~~~p~~~~~ 212 (261)
|. +|+..+..-.+..|.+.|.++++.+..+... ...-.+.++++|+++.+
T Consensus 157 ~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~l 218 (243)
T 3mbr_X 157 WV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRL 218 (243)
T ss_dssp EE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEE
T ss_pred Ee-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEE
Confidence 66 6776666657789999999999999887632 12246889999998874
No 247
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.97 E-value=1.7e-07 Score=68.88 Aligned_cols=170 Identities=12% Similarity=0.060 Sum_probs=111.3
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cCCcEEEEEEeCCcc
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGAT 97 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~ 97 (261)
..+..+++..+.+ .|..+|+.+++. .....+. .........++++.|.... .++.+.+||..+.+.
T Consensus 53 ~~LyestG~~g~S------~v~~vD~~Tgkv----~~~~~l~---~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 53 GYFYESTGLNGRS------SIRKVDIESGKT----LQQIELG---KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp TEEEEEEEETTEE------EEEEECTTTCCE----EEEEECC---TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCE
T ss_pred CEEEEECCCCCCc------eEEEEECCCCcE----EEEEecC---CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcE
Confidence 3455666555544 789999998876 2222232 2333333333455665544 578999999988775
Q ss_pred ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC-----CceeEEEEcCCCCEEEEe
Q 024868 98 DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-----KSVLDMDFSLDSEFLATT 172 (261)
Q Consensus 98 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~ 172 (261)
...+. ... ....+++|++.|+.+..++.|.++|..+.+....+.... ..+..+.|. +|+..+..
T Consensus 120 ~~ti~--------~~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~ 188 (262)
T 3nol_A 120 VRSFN--------YDG--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANV 188 (262)
T ss_dssp EEEEE--------CSS--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred EEEEE--------CCC--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEE
Confidence 32221 111 223455778888777667889999999887765544321 234567776 77766666
Q ss_pred cCCCcEEEEEccCCcEEEEEeecC-----------CCceEEEEEecCCCcc
Q 024868 173 STDGSARIWKTEDGVAWTFLTRNS-----------DEKIELCRFSKDGTKP 212 (261)
Q Consensus 173 ~~d~~i~iwd~~~~~~~~~~~~~~-----------~~~v~~~~~~p~~~~~ 212 (261)
-.++.|.+.|.++++.+..+.... ....+.++|+|+++.+
T Consensus 189 w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~l 239 (262)
T 3nol_A 189 WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRL 239 (262)
T ss_dssp TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEE
T ss_pred ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEE
Confidence 678899999999999998886421 1246889999999884
No 248
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.97 E-value=2e-07 Score=68.52 Aligned_cols=167 Identities=5% Similarity=-0.046 Sum_probs=111.1
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEE-EEecCCcEEEEEEeCCcc
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV-CSTTNGGCKLFEVYGGAT 97 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~~~~~~~~ 97 (261)
..+.++++.++ +|..+|+.+++. .... +... ..-..+++ +++.|. ....++.+.+||..+.+.
T Consensus 65 ~~Ly~stG~~g--------~v~~iD~~Tgkv----~~~~-l~~~-~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 65 GHFFESTGHQG--------TLRQLSLESAQP----VWME-RLGN-IFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQR 128 (268)
T ss_dssp TEEEEEETTTT--------EEEECCSSCSSC----SEEE-ECTT-CCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEE
T ss_pred CEEEEEcCCCC--------EEEEEECCCCcE----EeEE-CCCC-cceeEEEE--eCCEEEEEEccCCEEEEEECCcCcE
Confidence 56777777778 799999998875 2222 3321 11123555 444444 444678999999988775
Q ss_pred ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC-----CceeEEEEcCCCCEEEEe
Q 024868 98 DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-----KSVLDMDFSLDSEFLATT 172 (261)
Q Consensus 98 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~ 172 (261)
...+. . . .. ...+.+|++.|+.+..++.|.++|..+.+.+..+.... ..+..+.|. +|+..+..
T Consensus 129 ~~ti~-----~-~--~e--GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanv 197 (268)
T 3nok_A 129 ERTTR-----Y-S--GE--GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANI 197 (268)
T ss_dssp EEEEE-----C-S--SC--CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred EEEEe-----C-C--Cc--eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEE
Confidence 33221 1 1 11 13344678888877778899999999887765544322 235667777 77766666
Q ss_pred cCCCcEEEEEccCCcEEEEEeec------------CCCceEEEEEecCCCcc
Q 024868 173 STDGSARIWKTEDGVAWTFLTRN------------SDEKIELCRFSKDGTKP 212 (261)
Q Consensus 173 ~~d~~i~iwd~~~~~~~~~~~~~------------~~~~v~~~~~~p~~~~~ 212 (261)
-.++.|.+.|.++++.+..+... ...-.+.++|+|+++.+
T Consensus 198 w~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rl 249 (268)
T 3nok_A 198 WHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRI 249 (268)
T ss_dssp TTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCE
T ss_pred CCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEE
Confidence 67889999999999998887642 11246889999998884
No 249
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.96 E-value=3.1e-07 Score=77.98 Aligned_cols=160 Identities=13% Similarity=0.135 Sum_probs=95.3
Q ss_pred eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC---CCCeEEEEe------cCCcEEEE
Q 024868 20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP---SGDDFVCST------TNGGCKLF 90 (261)
Q Consensus 20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~------~dg~i~i~ 90 (261)
..+++++.++ .++.+|..+++.... .....+......+..+| ++ .++++. .+|.|+.|
T Consensus 122 g~v~v~~~dg--------~l~AlDa~TG~~~W~----~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~ 188 (689)
T 1yiq_A 122 GKVYVGVLDG--------RLEAIDAKTGQRAWS----VDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAY 188 (689)
T ss_dssp TEEEEECTTS--------EEEEEETTTCCEEEE----EECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEE
T ss_pred CEEEEEccCC--------EEEEEECCCCCEeee----ecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEE
Confidence 3566677777 899999988775221 11110111111111222 44 444443 26889999
Q ss_pred EEeCCccccceeeeeCCCC------------------------CCCCCeEEEEEeeCCcEEEEeccCC------------
Q 024868 91 EVYGGATDINLLAKKMPPL------------------------QDAGPQKCLSFSVDGSRFAAGGVDG------------ 134 (261)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~------------------------~~~~~v~~~~~s~~~~~l~~~~~d~------------ 134 (261)
|..+++............. .+......++++|++.+++++..++
T Consensus 189 D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~ 268 (689)
T 1yiq_A 189 DAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAK 268 (689)
T ss_dssp ETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTC
T ss_pred ECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCC
Confidence 9998876443321000000 0011123578899888888887765
Q ss_pred -------eEEEEEccCceEEeeccccC---------CceeEEEEcCCCC---EEEEecCCCcEEEEEccCCcEEEEE
Q 024868 135 -------HLRIMHWPSLRIILDEPKAH---------KSVLDMDFSLDSE---FLATTSTDGSARIWKTEDGVAWTFL 192 (261)
Q Consensus 135 -------~i~~~d~~~~~~~~~~~~~~---------~~v~~~~~s~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~ 192 (261)
.|..+|.++++.+..+...+ .+..-.....+|+ .++.++.+|.++++|.++|+.+...
T Consensus 269 gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 345 (689)
T 1yiq_A 269 GDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAK 345 (689)
T ss_dssp SCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred CCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccc
Confidence 39999999999887664321 1111222233565 7888999999999999999987543
No 250
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.94 E-value=4.2e-06 Score=65.11 Aligned_cols=216 Identities=6% Similarity=-0.076 Sum_probs=124.9
Q ss_pred eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE-ecCC
Q 024868 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TTNG 85 (261)
Q Consensus 7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg 85 (261)
+..++|.+. ...+.++-...+ .|+.+++++... .............+++.+.+..|+.+ ...+
T Consensus 75 ~~~l~~d~~--~~~ly~~D~~~~--------~I~r~~~~g~~~------~~~~~~~~~~p~glavd~~~g~ly~~d~~~~ 138 (349)
T 3v64_C 75 AIALDFHHR--RELVFWSDVTLD--------RILRANLNGSNV------EEVVSTGLESPGGLAVDWVHDKLYWTDSGTS 138 (349)
T ss_dssp EEEEEEETT--TTEEEEEETTTT--------EEEEEETTSCSC------EEEECSSCSCCCEEEEETTTTEEEEEETTTT
T ss_pred eEEEEEecc--ccEEEEEeccCC--------ceEEEecCCCCc------eEEEeCCCCCccEEEEecCCCeEEEEcCCCC
Confidence 456777654 245555554555 788888776542 22222233456789998865555444 4457
Q ss_pred cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cC-CeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VD-GHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d-~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
.|.+.+++.... ..+. .........++++|.+..|+... .. +.|..+++............-.....++++
T Consensus 139 ~I~~~~~dG~~~-~~l~------~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d 211 (349)
T 3v64_C 139 RIEVANLDGAHR-KVLL------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTID 211 (349)
T ss_dssp EEEEEETTSCSC-EEEE------CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEE
T ss_pred eEEEEcCCCCce-EEEE------eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEe
Confidence 788888865432 1111 01234568999999665555543 34 778888876433322222223357899999
Q ss_pred CCCCEEEEe-cCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868 164 LDSEFLATT-STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (261)
Q Consensus 164 ~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~ 242 (261)
|++..|+.+ ...+.|..+|+........+..... ....+++. .+.. ..+....+.|..+|..+++.+..+..
T Consensus 212 ~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~-~P~giav~-~~~l-----y~td~~~~~V~~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 212 YAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP-HPFAITVF-EDSL-----YWTDWHTKSINSANKFTGKNQEIIRN 284 (349)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-SEEEEEEE-TTEE-----EEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCC-CceEEEEE-CCEE-----EEecCCCCeEEEEEccCCCccEEecc
Confidence 876666554 4567899999875433333332223 46788883 3432 25556677899998766665544443
Q ss_pred cCcCeeEEEE
Q 024868 243 LRKPASVLSI 252 (261)
Q Consensus 243 ~~~~v~~~~~ 252 (261)
.......+++
T Consensus 285 ~~~~p~gi~v 294 (349)
T 3v64_C 285 KLHFPMDIHT 294 (349)
T ss_dssp SCSCCCCEEE
T ss_pred CCCCCceEEE
Confidence 2233344443
No 251
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.93 E-value=2.7e-07 Score=78.22 Aligned_cols=158 Identities=9% Similarity=0.093 Sum_probs=96.9
Q ss_pred eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCC-C----CCce-EEEECCCCCeEEEEec------CCcE
Q 024868 20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-E----GDPM-TIAVNPSGDDFVCSTT------NGGC 87 (261)
Q Consensus 20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~----~~v~-~~~~~~~~~~l~~~~~------dg~i 87 (261)
..+.++..++ .++.+|..+++.. ..+..+ . ..+. .... .+..+++++. ++.|
T Consensus 129 ~~v~v~~~dg--------~l~alD~~tG~~~------W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v 192 (677)
T 1kb0_A 129 GKVYVGAWDG--------RLIALDAATGKEV------WHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYI 192 (677)
T ss_dssp TEEEEECTTS--------EEEEEETTTCCEE------EEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEE
T ss_pred CEEEEEcCCC--------EEEEEECCCCCEE------eeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEE
Confidence 3566666777 8999999887752 122211 0 1111 1111 2345555543 6889
Q ss_pred EEEEEeCCccccceeeeeCCC---------------C----------CCCCCeEEEEEeeCCcEEEEeccCC--------
Q 024868 88 KLFEVYGGATDINLLAKKMPP---------------L----------QDAGPQKCLSFSVDGSRFAAGGVDG-------- 134 (261)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~~~---------------~----------~~~~~v~~~~~s~~~~~l~~~~~d~-------- 134 (261)
+.+|..+++...+........ . .+......++++|++..++++..++
T Consensus 193 ~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~ 272 (677)
T 1kb0_A 193 TAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVR 272 (677)
T ss_dssp EEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHH
T ss_pred EEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCC
Confidence 999998887644332111000 0 0111224578899888888876553
Q ss_pred -----------eEEEEEccCceEEeeccccC---------CceeEEEEcCCC---CEEEEecCCCcEEEEEccCCcEEEE
Q 024868 135 -----------HLRIMHWPSLRIILDEPKAH---------KSVLDMDFSLDS---EFLATTSTDGSARIWKTEDGVAWTF 191 (261)
Q Consensus 135 -----------~i~~~d~~~~~~~~~~~~~~---------~~v~~~~~s~~~---~~l~~~~~d~~i~iwd~~~~~~~~~ 191 (261)
.|..+|.++++.+..+...+ ....-+....+| ..++.++.+|.++++|..+|+.+..
T Consensus 273 ~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~ 352 (677)
T 1kb0_A 273 SPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISA 352 (677)
T ss_dssp STTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred CccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecc
Confidence 59999999999877654321 112223333477 6789999999999999999999877
Q ss_pred Ee
Q 024868 192 LT 193 (261)
Q Consensus 192 ~~ 193 (261)
+.
T Consensus 353 ~~ 354 (677)
T 1kb0_A 353 KN 354 (677)
T ss_dssp EE
T ss_pred cc
Confidence 65
No 252
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.93 E-value=5.6e-07 Score=76.16 Aligned_cols=183 Identities=13% Similarity=0.140 Sum_probs=115.9
Q ss_pred EEEECCCCCeEEEEecCC-------------------cEEEEEEeCCccccceeeeeCC--CCCCCCCeEEEEEeeCCc-
Q 024868 68 TIAVNPSGDDFVCSTTNG-------------------GCKLFEVYGGATDINLLAKKMP--PLQDAGPQKCLSFSVDGS- 125 (261)
Q Consensus 68 ~~~~~~~~~~l~~~~~dg-------------------~i~i~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~- 125 (261)
.+++.|+...++.+..++ .|..+|..+++........... ......+.....+..+|+
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~ 313 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP 313 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence 478888888888777665 3888888888754432211000 000113333334445776
Q ss_pred --EEEEeccCCeEEEEEccCceEEeeccccC------------Cc------------------------eeEEEEcCCCC
Q 024868 126 --RFAAGGVDGHLRIMHWPSLRIILDEPKAH------------KS------------------------VLDMDFSLDSE 167 (261)
Q Consensus 126 --~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------------~~------------------------v~~~~~s~~~~ 167 (261)
.++.++.+|.++++|..+++.+....... .+ -..++++|+..
T Consensus 314 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g 393 (668)
T 1kv9_A 314 RKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG 393 (668)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT
T ss_pred EEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC
Confidence 68888899999999999998763221110 00 01267788766
Q ss_pred EEEEe------------------------------------cCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868 168 FLATT------------------------------------STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (261)
Q Consensus 168 ~l~~~------------------------------------~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 211 (261)
.++.. ..++.|..||+.+++.+.+..... +.....+...+..
T Consensus 394 ~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~ 471 (668)
T 1kv9_A 394 LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT--HWNGGTLSTAGNL 471 (668)
T ss_dssp EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTE
T ss_pred EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC--CCcCceeEeCCCE
Confidence 65541 124789999999999988776543 2444445666776
Q ss_pred ceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCe-eEEEEeeCCC
Q 024868 212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPA-SVLSISLDGK 257 (261)
Q Consensus 212 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v-~~~~~s~dg~ 257 (261)
++.++.|+.++.||.++++.+..+....... .-+.+..+|+
T Consensus 472 -----vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~ 513 (668)
T 1kv9_A 472 -----VFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGR 513 (668)
T ss_dssp -----EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred -----EEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCE
Confidence 4667889999999999999987666543211 2344556666
No 253
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.92 E-value=1.8e-06 Score=63.70 Aligned_cols=192 Identities=8% Similarity=0.074 Sum_probs=122.0
Q ss_pred eeecCCCCCceEEEECCCCCeEEE-EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCe
Q 024868 57 YVFDESEGDPMTIAVNPSGDDFVC-STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH 135 (261)
Q Consensus 57 ~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 135 (261)
+.+++-...+..++|+|+++.|++ ...++.|...|.. ++..... .+........+++.+++.++++.-.++.
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i------~l~g~~D~EGIa~~~~g~~~vs~E~~~~ 92 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTI------PLDFVKDLETIEYIGDNQFVISDERDYA 92 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEE------ECSSCSSEEEEEECSTTEEEEEETTTTE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEE------ecCCCCChHHeEEeCCCEEEEEECCCCc
Confidence 356666678999999998776654 5666777777776 3321111 1233356788999999987777656788
Q ss_pred EEEEEccCceEE---eec------cccCCceeEEEEcCCCCEEEEecCCCcEEEEEcc---CCcEEEEEee------cCC
Q 024868 136 LRIMHWPSLRII---LDE------PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE---DGVAWTFLTR------NSD 197 (261)
Q Consensus 136 i~~~d~~~~~~~---~~~------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~------~~~ 197 (261)
+.++++.....+ ... .........++|+|.++.|+++.......||.++ ..+.+..+.. ...
T Consensus 93 l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~ 172 (255)
T 3qqz_A 93 IYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTL 172 (255)
T ss_dssp EEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCS
T ss_pred EEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccccc
Confidence 999887654321 111 1122357899999998777766655555555553 1122222211 111
Q ss_pred CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccC---------cCeeEEEEeeCCCEEe
Q 024868 198 EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR---------KPASVLSISLDGKYLA 260 (261)
Q Consensus 198 ~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~---------~~v~~~~~s~dg~~la 260 (261)
..+.+++++|....+ ++.+.....+..+|.. ++.+..+.... .....++|.++|+..+
T Consensus 173 ~d~S~l~~dp~tg~l----liLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI 239 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTL----LVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI 239 (255)
T ss_dssp SCCCEEEEETTTTEE----EEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE
T ss_pred CCceeEEEcCCCCeE----EEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE
Confidence 247899999987764 3556777899999976 55655554432 2457899999998654
No 254
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.91 E-value=1.6e-08 Score=77.88 Aligned_cols=198 Identities=14% Similarity=0.079 Sum_probs=117.8
Q ss_pred EEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccc
Q 024868 21 LVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN 100 (261)
Q Consensus 21 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 100 (261)
.+.+++.++ .++.+| .+++. ......+...+.++...+++. +..++.+ +..+|. +++....
T Consensus 32 ~l~v~t~~~--------~l~~~d-~~g~~------~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~ 92 (330)
T 3hxj_A 32 TIYLGSSNK--------NLYAIN-TDGSV------KWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWR 92 (330)
T ss_dssp CEECSSTTT--------TTEEEC-TTSCE------EESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGG
T ss_pred eEEEEcCCC--------EEEEEC-CCCcE------EEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEE
Confidence 455555555 567788 55543 111222223456666766775 4444444 777775 3332111
Q ss_pred eeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEE
Q 024868 101 LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI 180 (261)
Q Consensus 101 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i 180 (261)
.. ..........+. +..+.+++.++.+..+|.. ++...........+.++...+++. +..++.++.+..
T Consensus 93 ~~-------~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~ 161 (330)
T 3hxj_A 93 FD-------TKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYA 161 (330)
T ss_dssp SC-------C-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEE
T ss_pred EE-------CCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEE
Confidence 10 001112222333 4456677788999999987 666555544444566677777776 555667899999
Q ss_pred EEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEE
Q 024868 181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL 259 (261)
Q Consensus 181 wd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 259 (261)
+|.. ++....+..... .+.++...+++.. ..++ +.|..+| .+++.+.........+.++...++|+..
T Consensus 162 ~d~~-g~~~~~~~~~~~-~~~~~~~d~~g~l------~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~ 229 (330)
T 3hxj_A 162 INPD-GTEKWRFKTNDA-ITSAASIGKDGTI------YFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIY 229 (330)
T ss_dssp ECTT-SCEEEEEECSSC-CCSCCEECTTCCE------EEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEE
T ss_pred ECCC-CCEeEEEecCCC-ceeeeEEcCCCEE------EEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEE
Confidence 9998 877766654433 4667777778874 3333 6799999 7777665555455567777787776654
No 255
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.89 E-value=1.9e-06 Score=66.23 Aligned_cols=222 Identities=11% Similarity=0.024 Sum_probs=125.9
Q ss_pred eEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeec------------------CCCCCceEE
Q 024868 8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD------------------ESEGDPMTI 69 (261)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------------------~~~~~v~~~ 69 (261)
.+++|.++ .+++.++..++ .|+.|++.+..+. ..... .....+..+
T Consensus 22 ~~i~~d~~---g~~l~v~~~~~--------~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi 85 (322)
T 2fp8_A 22 NSFTFDST---NKGFYTSVQDG--------RVIKYEGPNSGFV-----DFAYASPYWNKAFCENSTDAEKRPLCGRTYDI 85 (322)
T ss_dssp CCEECCTT---CSSEEEECTTS--------EEEEECCTTTCEE-----EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEE
T ss_pred eEEEEcCC---CCEEEEEcCCC--------eEEEECCCCCceE-----EEecccccccccccccccchhccccCCCCceE
Confidence 34556553 44455566666 8999988765431 11110 011357889
Q ss_pred EECC-CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEecc---------------
Q 024868 70 AVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGV--------------- 132 (261)
Q Consensus 70 ~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~--------------- 132 (261)
++.+ +++ |+++...+.+..+|..++.. ..+...... ........+++.+ +|+..++-..
T Consensus 86 ~~~~~~g~-l~v~d~~~~i~~~d~~~g~~--~~~~~~~~~-~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~ 161 (322)
T 2fp8_A 86 SYNLQNNQ-LYIVDCYYHLSVVGSEGGHA--TQLATSVDG-VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTS 161 (322)
T ss_dssp EEETTTTE-EEEEETTTEEEEECTTCEEC--EEEESEETT-EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHT
T ss_pred EEcCCCCc-EEEEECCCCEEEEeCCCCEE--EEecccCCC-CcccccceEEEecCCCEEEEECCcccccccccceehccc
Confidence 9998 565 55554555577777554321 111100000 0123568899999 9987666432
Q ss_pred --CCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEe-cCCCcEEEEEccCCc--EEEEEeecCCCceEEEEEec
Q 024868 133 --DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT-STDGSARIWKTEDGV--AWTFLTRNSDEKIELCRFSK 207 (261)
Q Consensus 133 --d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~p 207 (261)
++.|..+|..+++... ..........++++|+++.|+.+ +.++.|.+|++.... ....+.. ... ...+++.+
T Consensus 162 ~~~g~v~~~d~~~~~~~~-~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~ 238 (322)
T 2fp8_A 162 DKTGRLIKYDPSTKETTL-LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNA 238 (322)
T ss_dssp CCCEEEEEEETTTTEEEE-EEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECT
T ss_pred CCCceEEEEeCCCCEEEE-eccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECC
Confidence 3678888876665422 21122345679999999866554 556899999987421 1222222 223 77899999
Q ss_pred CCCcceEEEEEeeC---------CCcEEEEEECCCCeEEeeeeccC----cCeeEEEEeeCCCE
Q 024868 208 DGTKPFLFCTVQRG---------DKALLAVYDISTWNKIGHKRLLR----KPASVLSISLDGKY 258 (261)
Q Consensus 208 ~~~~~~~~~~~~~~---------~d~~i~~~d~~~~~~~~~~~~~~----~~v~~~~~s~dg~~ 258 (261)
+|+. |+ +... ..+.|..+|.. ++.+..+.... ..+..+++ .+|+.
T Consensus 239 ~G~l-~v---a~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L 296 (322)
T 2fp8_A 239 DGHF-WV---SSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLL 296 (322)
T ss_dssp TSCE-EE---EEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEE
T ss_pred CCCE-EE---EecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEE
Confidence 9975 32 2211 24678888874 66665554332 34556665 45543
No 256
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.88 E-value=8.7e-06 Score=63.33 Aligned_cols=196 Identities=5% Similarity=-0.041 Sum_probs=115.6
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeE
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK 116 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~ 116 (261)
.|+.+++++... ...... ...+..++|++....|.... ..+.|+.++..+..... .. ........
T Consensus 54 ~I~~i~~~g~~~------~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-~~------~~~~~~p~ 119 (349)
T 3v64_C 54 DIRQVLPHRSEY------TLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-VV------STGLESPG 119 (349)
T ss_dssp CEEEECTTSCCE------EEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-EE------CSSCSCCC
T ss_pred ceEEEeCCCCee------EEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE-EE------eCCCCCcc
Confidence 467777766543 222332 34578999998666665544 46778888877654211 11 01123457
Q ss_pred EEEEeeCCc-EEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEe-cCC-CcEEEEEccCCcEEEEEe
Q 024868 117 CLSFSVDGS-RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT-STD-GSARIWKTEDGVAWTFLT 193 (261)
Q Consensus 117 ~~~~s~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d-~~i~iwd~~~~~~~~~~~ 193 (261)
.+++++.+. ++++-...+.|.+.++..................++++|.+..|+.. ..+ +.|..+++.... ...+.
T Consensus 120 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~ 198 (349)
T 3v64_C 120 GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIA 198 (349)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESC
T ss_pred EEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEE
Confidence 899998554 44554567789999976443322222233457899999966555544 344 778888876433 33332
Q ss_pred ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEE
Q 024868 194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI 252 (261)
Q Consensus 194 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 252 (261)
...-.....++++|++..+| ++-...+.|..+|+..................+++
T Consensus 199 ~~~~~~PnGla~d~~~~~lY----~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav 253 (349)
T 3v64_C 199 DTHLFWPNGLTIDYAGRRMY----WVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV 253 (349)
T ss_dssp CSSCSCEEEEEEETTTTEEE----EEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE
T ss_pred ECCCCCcceEEEeCCCCEEE----EEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE
Confidence 22223478999999888744 44455678999998753322222222234456666
No 257
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.87 E-value=1.6e-06 Score=74.49 Aligned_cols=202 Identities=9% Similarity=-0.026 Sum_probs=107.4
Q ss_pred eeeEEEEE-eeCCcceEEEEecCCCCCCCCCceEEEEEcCCCC-ceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 6 TVTCGSWI-KRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTT-SVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 6 ~v~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
.+...+|+ |+ ..++|.+.... |. ....|+.+|..++ ..... .+. .....++|+|||+.|+....
T Consensus 175 ~~~~~~~S~PD---G~~lAy~~~~~--G~-~~~~l~v~dl~~g~~~l~~-----~~~---~~~~~~~WspDg~~l~y~~~ 240 (751)
T 2xe4_A 175 DVMEVKPAPPE---HDLVAFSVDMS--GN-EVYTIEFKRISDPSQTIAD-----KVS---GTNGEIVWGPDHTSLFYVTK 240 (751)
T ss_dssp EEEEEEECTTT---TCEEEEEEESS--SS-SCEEEEEEETTCTTCCCCC-----CEE---EECSCCEECSSTTEEEEEEE
T ss_pred EEeeeEecCCC---CCEEEEEEeCC--CC-ceEEEEEEECCCCCEeCCc-----ccc---CceeeEEEecCCCEEEEEEE
Confidence 45667888 75 44555443221 11 1236889998877 52111 111 11356889999998887766
Q ss_pred C-----CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc---CCeEEEEEccCce-EE--eecc-
Q 024868 84 N-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---DGHLRIMHWPSLR-II--LDEP- 151 (261)
Q Consensus 84 d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~-~~--~~~~- 151 (261)
+ ..|+.+++.+.......+... ........+.|||||++|+.... ...|+++|+.++. .. ..+.
T Consensus 241 d~~~~~~~v~~~~lgt~~~~~~lv~~~----~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~ 316 (751)
T 2xe4_A 241 DETLRENKVWRHVMGKLQSEDVCLYEE----HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP 316 (751)
T ss_dssp CTTCCEEEEEEEETTSCGGGCEEEEEC----CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC
T ss_pred CCCCCCCEEEEEECCCCchhcEEEEec----CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec
Confidence 5 246667766543211111110 11234567899999999887652 3468889987652 11 2222
Q ss_pred ccCCceeEEEEcCCCCEEEEecCC----CcEEEEEccCC-cEEE-EEeecCCCceEEEEEecCCCcceEEEEEeeCCCc-
Q 024868 152 KAHKSVLDMDFSLDSEFLATTSTD----GSARIWKTEDG-VAWT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA- 224 (261)
Q Consensus 152 ~~~~~v~~~~~s~~~~~l~~~~~d----~~i~iwd~~~~-~~~~-~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~- 224 (261)
.......++.|+.++.+++....+ ..|..+|+.++ +... .+.......+.. +++.+..+ ++....++
T Consensus 317 ~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~--~~~~~~~l----v~~~~~~g~ 390 (751)
T 2xe4_A 317 REKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMES--IAVRSNYL----VVAGRRAGL 390 (751)
T ss_dssp CCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEE--EEECSSEE----EEEEEETTE
T ss_pred CCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEE--EEEECCEE----EEEEEeCCE
Confidence 223455666665544444454443 35667777642 2222 222222212344 45556653 23333344
Q ss_pred -EEEEEEC
Q 024868 225 -LLAVYDI 231 (261)
Q Consensus 225 -~i~~~d~ 231 (261)
.|+++|+
T Consensus 391 ~~l~~~dl 398 (751)
T 2xe4_A 391 TRIWTMMA 398 (751)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEec
Confidence 5777776
No 258
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.87 E-value=9.3e-07 Score=73.51 Aligned_cols=166 Identities=11% Similarity=0.078 Sum_probs=100.6
Q ss_pred CcEEEEEEeCCccccceeeeeCCC--CCC-CCCeEEEEEe-eCCc---EEEEeccCCeEEEEEccCceEEeeccccC---
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPP--LQD-AGPQKCLSFS-VDGS---RFAAGGVDGHLRIMHWPSLRIILDEPKAH--- 154 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~--~~~-~~~v~~~~~s-~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--- 154 (261)
+.|.-+|..+++............ +.. ..++. +... .+|+ .++.++.+|.++++|..+++.+.......
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 578888888887644321110000 000 11222 2222 4674 67788899999999999988765433221
Q ss_pred ----------Cc--------------------------------eeEEEEcCCCCEEEEec-------------------
Q 024868 155 ----------KS--------------------------------VLDMDFSLDSEFLATTS------------------- 173 (261)
Q Consensus 155 ----------~~--------------------------------v~~~~~s~~~~~l~~~~------------------- 173 (261)
.+ -..++++|+..++++..
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 00 01346666655554422
Q ss_pred --------------CCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868 174 --------------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (261)
Q Consensus 174 --------------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~ 239 (261)
.++.|.-||+.+++.+.+...... ...-.....+.. ++.++.|+.++.||.++|+.+..
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~--~~~g~~~taggl-----vf~g~~dg~l~A~D~~tG~~lW~ 522 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP--LWAGVLATAGNL-----VFTGTGDGYFKAFDAKSGKELWK 522 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC--CCSCCEEETTTE-----EEEECTTSEEEEEETTTCCEEEE
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC--CcccceEeCCCE-----EEEECCCCcEEEEECCCCCEEEE
Confidence 257899999999998877764432 222222334554 45688899999999999999877
Q ss_pred eeccCcCe-eEEEEeeCCCE
Q 024868 240 KRLLRKPA-SVLSISLDGKY 258 (261)
Q Consensus 240 ~~~~~~~v-~~~~~s~dg~~ 258 (261)
+....... .-+.+..||+.
T Consensus 523 ~~~~~g~~a~P~~y~~~G~q 542 (582)
T 1flg_A 523 FQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp EECSSCCCSCCEEEEETTEE
T ss_pred ecCCCCcccCceEEEECCEE
Confidence 76543322 23677788874
No 259
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.86 E-value=3.9e-06 Score=66.22 Aligned_cols=217 Identities=6% Similarity=-0.075 Sum_probs=125.2
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE-ecC
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TTN 84 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d 84 (261)
.+..++|.+. ...++++-...+ .|+.+++++... ...+.........+++.+.+..|+.+ ...
T Consensus 117 ~~~gl~~d~~--~~~ly~~D~~~~--------~I~r~~~~g~~~------~~~~~~~~~~p~glavd~~~g~lY~~d~~~ 180 (386)
T 3v65_B 117 NAIALDFHHR--RELVFWSDVTLD--------RILRANLNGSNV------EEVVSTGLESPGGLAVDWVHDKLYWTDSGT 180 (386)
T ss_dssp CEEEEEEETT--TTEEEEEETTTT--------EEEEEETTSCCE------EEEECSSCSCCCCEEEETTTTEEEEEETTT
T ss_pred ccEEEEEecC--CCeEEEEeCCCC--------cEEEEecCCCCc------EEEEeCCCCCccEEEEEeCCCeEEEEcCCC
Confidence 3456777654 245555555555 788888776542 22233233456778888765555544 445
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cC-CeEEEEEccCceEEeeccccCCceeEEEE
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VD-GHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d-~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 162 (261)
+.|.+.+++.... ..+. .........++++|.+..|+.+. .. +.|..+++............-.....+++
T Consensus 181 ~~I~~~~~dg~~~-~~l~------~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlav 253 (386)
T 3v65_B 181 SRIEVANLDGAHR-KVLL------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTI 253 (386)
T ss_dssp TEEEECBTTSCSC-EEEE------CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEE
T ss_pred CeEEEEeCCCCce-EEee------cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEE
Confidence 6777777765432 1111 11234578999999766655553 33 67888887543332222222335789999
Q ss_pred cCCCCEEEEe-cCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868 163 SLDSEFLATT-STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (261)
Q Consensus 163 s~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~ 241 (261)
+|++..|+.+ +..+.|..+|+........+..... ....+++. .+.. ..+....+.|..+|..+++.+..+.
T Consensus 254 d~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~-~P~giav~-~~~l-----y~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 254 DYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP-HPFAITVF-EDSL-----YWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCS-SEEEEEEE-TTEE-----EEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCC-CceEEEEE-CCEE-----EEeeCCCCeEEEEECCCCcceEEEc
Confidence 9876655544 4567899999865433333332223 46788883 3332 2555667889999976776554444
Q ss_pred ccCcCeeEEEE
Q 024868 242 LLRKPASVLSI 252 (261)
Q Consensus 242 ~~~~~v~~~~~ 252 (261)
........+++
T Consensus 327 ~~~~~p~gi~v 337 (386)
T 3v65_B 327 NKLHFPMDIHT 337 (386)
T ss_dssp CSCSCCCCEEE
T ss_pred cCCCCCceEEE
Confidence 33233444544
No 260
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.86 E-value=2.3e-06 Score=71.06 Aligned_cols=185 Identities=14% Similarity=0.012 Sum_probs=111.8
Q ss_pred EEEECCCCCeEEEEecC----------------CcEEEEEEeCCccccceeeeeCCC--CC-CCCCeEEEEEeeCCc---
Q 024868 68 TIAVNPSGDDFVCSTTN----------------GGCKLFEVYGGATDINLLAKKMPP--LQ-DAGPQKCLSFSVDGS--- 125 (261)
Q Consensus 68 ~~~~~~~~~~l~~~~~d----------------g~i~i~~~~~~~~~~~~~~~~~~~--~~-~~~~v~~~~~s~~~~--- 125 (261)
.+++.++...++.+..+ +.|..+|..+++............ .. ...++. +...++|+
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~ 317 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTP 317 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEE
Confidence 35566666666655432 258888888877533321110000 00 112222 33335784
Q ss_pred EEEEeccCCeEEEEEccCceEEeeccccC-------------Cce--------------------------eEEEEcCCC
Q 024868 126 RFAAGGVDGHLRIMHWPSLRIILDEPKAH-------------KSV--------------------------LDMDFSLDS 166 (261)
Q Consensus 126 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-------------~~v--------------------------~~~~~s~~~ 166 (261)
.++.++.+|.++++|..+++.+....... .++ ..++++|+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 56778889999999999998765543211 011 246788877
Q ss_pred CEEEEec-------------------------------------CCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCC
Q 024868 167 EFLATTS-------------------------------------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209 (261)
Q Consensus 167 ~~l~~~~-------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~ 209 (261)
.+++... .++.+..||..+++.+.++..... +....+...+
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~--~~~~~~~t~g 475 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA--AWGGTLYTKG 475 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC--CCSBCEEETT
T ss_pred CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCC--ccceeEEECC
Confidence 7666543 357899999999998887764322 3333334445
Q ss_pred CcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcC-eeEEEEeeCCCEEe
Q 024868 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKP-ASVLSISLDGKYLA 260 (261)
Q Consensus 210 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~s~dg~~la 260 (261)
.. ++.++.|+.|+.+|.++++.+..+...... -..+.+..+|+.++
T Consensus 476 g~-----v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 476 GL-----VWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp TE-----EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CE-----EEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEE
Confidence 55 355788999999999999998776644321 22345667887543
No 261
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.81 E-value=7.8e-06 Score=64.52 Aligned_cols=196 Identities=5% Similarity=-0.023 Sum_probs=115.0
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeE
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK 116 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~ 116 (261)
.|+.+++.+... ..... ....+..++|.+.+..|+... ..+.|+.++..+.... ... ........
T Consensus 97 ~I~~i~~~~~~~------~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-~~~------~~~~~~p~ 162 (386)
T 3v65_B 97 DIRQVLPHRSEY------TLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-EVV------STGLESPG 162 (386)
T ss_dssp CEEEECTTSCCC------EEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE-EEE------CSSCSCCC
T ss_pred cceeeccCCCcE------EEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE-EEE------eCCCCCcc
Confidence 567777766543 22232 234578999998666665544 4577888887765421 111 01123446
Q ss_pred EEEEeeCCcEE-EEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEec-CC-CcEEEEEccCCcEEEEEe
Q 024868 117 CLSFSVDGSRF-AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TD-GSARIWKTEDGVAWTFLT 193 (261)
Q Consensus 117 ~~~~s~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d-~~i~iwd~~~~~~~~~~~ 193 (261)
.+++++.+..| ++-...+.|.+.++..................++++|.+..|+.+. .. +.|..+++..... ..+.
T Consensus 163 glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~ 241 (386)
T 3v65_B 163 GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIA 241 (386)
T ss_dssp CEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEE
T ss_pred EEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc-EEEE
Confidence 78899855444 4445667888888764433222222334678999999766555543 34 6788888764433 3332
Q ss_pred ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEE
Q 024868 194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI 252 (261)
Q Consensus 194 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 252 (261)
...-.....++|+|++..+| ++-...+.|..+|+..................+++
T Consensus 242 ~~~~~~PnGlavd~~~~~lY----~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav 296 (386)
T 3v65_B 242 DTHLFWPNGLTIDYAGRRMY----WVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV 296 (386)
T ss_dssp CSSCSCEEEEEEEGGGTEEE----EEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE
T ss_pred ECCCCCeeeEEEeCCCCEEE----EEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE
Confidence 22222478999999887744 44556678999998753322222222234456666
No 262
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.81 E-value=3.9e-06 Score=70.96 Aligned_cols=118 Identities=15% Similarity=0.114 Sum_probs=71.7
Q ss_pred ceEEEEecCCCCC--C-CCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec-CCcEEEEEEeC
Q 024868 19 VNLVVLGKSSRAS--S-SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYG 94 (261)
Q Consensus 19 ~~~~~~g~~~~~~--~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~~~~~ 94 (261)
..+++.||.+... + ....-.++.||+.+..+...+ . ....+.....++++.++++.++.|+. +..+.+||..+
T Consensus 198 g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~--~-~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t 274 (656)
T 1k3i_A 198 GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT--V-TVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSS 274 (656)
T ss_dssp TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE--E-EECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGG
T ss_pred CEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc--c-cCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcC
Confidence 5677777654321 1 122336889999888763221 1 11223334556788899999999884 46799999876
Q ss_pred CccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cC-----CeEEEEEccCce
Q 024868 95 GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VD-----GHLRIMHWPSLR 145 (261)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d-----~~i~~~d~~~~~ 145 (261)
..- .. ...+.....-.++...++++.++.|+ .+ ..+.+||..+.+
T Consensus 275 ~~W--~~----~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 275 DSW--IP----GPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp TEE--EE----CCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred Cce--eE----CCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 542 11 11222222223455667899999988 34 468999987654
No 263
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.80 E-value=1.6e-05 Score=63.69 Aligned_cols=154 Identities=10% Similarity=0.042 Sum_probs=92.1
Q ss_pred eeEEEEEe-eCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-
Q 024868 7 VTCGSWIK-RPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN- 84 (261)
Q Consensus 7 v~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d- 84 (261)
...++|.| + ..++.++-.. + .|..+|+.+..+ .... ........++|++++++|+++...
T Consensus 139 P~~lavdp~~--~g~Lyv~d~~-~--------~I~~id~~~~~v------~~~~-~~~~~P~~ia~d~~G~~lyvad~~~ 200 (430)
T 3tc9_A 139 AVWLSFDPKN--HNHLYLVGEQ-H--------PTRLIDFEKEYV------STVY-SGLSKVRTICWTHEADSMIITNDQN 200 (430)
T ss_dssp CCEEEEETTE--EEEEEEEEBT-E--------EEEEEETTTTEE------EEEE-CCCSCEEEEEECTTSSEEEEEECCS
T ss_pred CCEEEECCCC--CCeEEEEeCC-C--------cEEEEECCCCEE------EEEe-cCCCCcceEEEeCCCCEEEEEeCCC
Confidence 35678875 3 2444444332 4 888999887664 2222 234568899999999977666542
Q ss_pred C----cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEee-ccccCCcee
Q 024868 85 G----GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVL 158 (261)
Q Consensus 85 g----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~ 158 (261)
+ .+..++..........+ . .......++++| ++.++++-..++.|..++...+..... .........
T Consensus 201 ~~~~~~v~~~~~~g~~~~~~~l----~---~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~ 273 (430)
T 3tc9_A 201 NNDRPNNYILTRESGFKVITEL----T---KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEF 273 (430)
T ss_dssp CTTSEEEEEEEGGGTSCSEEEE----E---ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCE
T ss_pred CcccceEEEEeCCCceeeeeee----c---cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcce
Confidence 2 23333322211100111 1 123356788999 677666666778899999876654211 122223468
Q ss_pred EEEEcCCCCEEE-EecCCCcEEEEEccC
Q 024868 159 DMDFSLDSEFLA-TTSTDGSARIWKTED 185 (261)
Q Consensus 159 ~~~~s~~~~~l~-~~~~d~~i~iwd~~~ 185 (261)
.++|+|+|++|+ +-...+.|..++...
T Consensus 274 gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 274 HIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred eEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 899999999554 445678899988763
No 264
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.78 E-value=1.1e-05 Score=61.94 Aligned_cols=206 Identities=6% Similarity=-0.078 Sum_probs=119.9
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEE-EEecC
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV-CSTTN 84 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d 84 (261)
.+..++|.+. .+.+..+-...+ .|+.+++++... . ...+...-..+..+++.+.+..|+ +-...
T Consensus 36 ~~~~ld~d~~--~~~lyw~D~~~~--------~I~r~~~~g~~~---~--~~~~~~~l~~p~glavd~~~g~ly~~d~~~ 100 (318)
T 3sov_A 36 DAAAVDFVFS--HGLIYWSDVSEE--------AIKRTEFNKTES---V--QNVVVSGLLSPDGLACDWLGEKLYWTDSET 100 (318)
T ss_dssp EEEEEEEEGG--GTEEEEEETTTT--------EEEEEETTSSSC---C--CEEEEECCSCCCEEEEETTTTEEEEEETTT
T ss_pred ccEEEEEEeC--CCEEEEEECCCC--------cEEEEEccCCCc---e--EEEEcCCCCCccEEEEEcCCCeEEEEECCC
Confidence 3456777764 245555555555 788888766531 0 111222234567899987555554 44456
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec--cCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 162 (261)
+.|.+++++.... ..+. .........++++|.+..|+.+. ..+.|...++............-.....+++
T Consensus 101 ~~I~~~~~dG~~~-~~l~------~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglav 173 (318)
T 3sov_A 101 NRIEVSNLDGSLR-KVLF------WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTL 173 (318)
T ss_dssp TEEEEEETTSCSC-EEEE------CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEE
T ss_pred CEEEEEECCCCcE-EEEE------eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEE
Confidence 7888888865432 1111 02234568999999765655554 3577888887532221111222235689999
Q ss_pred cCCCCEEEEe-cCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868 163 SLDSEFLATT-STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (261)
Q Consensus 163 s~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~ 240 (261)
+|++..|+.+ +..+.|..+|+..... ..+..........+++.. ..+ ..+....+.|..+|..+++....+
T Consensus 174 d~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~glav~~--~~l----ywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 174 DYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVKGSLPHPFALTLFE--DIL----YWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSCCSCEEEEEEET--TEE----EEEETTTTEEEEEETTTCCSCEEE
T ss_pred eccCCEEEEEECCCCEEEEEcCCCCce-EEEecCCCCCceEEEEeC--CEE----EEEecCCCeEEEEECCCCCceEEE
Confidence 9976666554 4568899999864333 333221222467787753 332 244556788999998777654433
No 265
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.78 E-value=2.3e-05 Score=60.04 Aligned_cols=208 Identities=11% Similarity=-0.062 Sum_probs=118.0
Q ss_pred eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE-ecCC
Q 024868 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TTNG 85 (261)
Q Consensus 7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg 85 (261)
+..++|.+. ...+.++-...+ .|+.++.++....... ...+...-..+..+++.+.+..|+.+ ...+
T Consensus 32 p~g~~~d~~--~~~ly~~D~~~~--------~I~~~~~~g~~~~~~~--~~~~~~~~~~p~glavd~~~~~ly~~d~~~~ 99 (316)
T 1ijq_A 32 VVALDTEVA--SNRIYWSDLSQR--------MICSTQLDRAHGVSSY--DTVISRDIQAPDGLAVDWIHSNIYWTDSVLG 99 (316)
T ss_dssp EEEEEEETT--TTEEEEEETTTT--------EEEEEEC--------C--EEEECSSCSCCCEEEEETTTTEEEEEETTTT
T ss_pred eEEEEEEeC--CCEEEEEECCCC--------cEEEEECCCCCCCccc--EEEEeCCCCCcCEEEEeecCCeEEEEECCCC
Confidence 456777664 245555555556 7888887652100000 11232223456789998755555444 4567
Q ss_pred cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-C-CeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-D-GHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d-~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
.|.+++...... ..+.. ........++++|.+..|+.+.. . +.|...++............-.....++++
T Consensus 100 ~I~~~~~~g~~~-~~~~~------~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d 172 (316)
T 1ijq_A 100 TVSVADTKGVKR-KTLFR------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLD 172 (316)
T ss_dssp EEEEEETTSSSE-EEEEE------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEE
T ss_pred EEEEEeCCCCce-EEEEE------CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEe
Confidence 899988765432 11111 12246789999996665555543 2 678888875332211111223457899999
Q ss_pred CCCCEEEEe-cCCCcEEEEEccCCcEEEEEeec--CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868 164 LDSEFLATT-STDGSARIWKTEDGVAWTFLTRN--SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (261)
Q Consensus 164 ~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~ 240 (261)
|++..|+.+ +..+.|..+|+.... .+.+... .......+++. .+ .+ ..+....+.|..+|..+++.+..+
T Consensus 173 ~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~-~l----y~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 173 LLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-ED-KV----FWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TT-EE----EEEETTTTEEEEEETTTCCCCEEE
T ss_pred ccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CC-EE----EEEECCCCeEEEEeCCCCcceEEE
Confidence 977666554 456789999987433 2333221 12236778884 33 32 245566788999998777654443
No 266
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.77 E-value=3.1e-06 Score=70.43 Aligned_cols=183 Identities=9% Similarity=-0.020 Sum_probs=109.4
Q ss_pred EEEECCCCCeEEEEecC----------------CcEEEEEEeCCccccceeeeeCCC--CCC-CCCeEEEEEe-eCC---
Q 024868 68 TIAVNPSGDDFVCSTTN----------------GGCKLFEVYGGATDINLLAKKMPP--LQD-AGPQKCLSFS-VDG--- 124 (261)
Q Consensus 68 ~~~~~~~~~~l~~~~~d----------------g~i~i~~~~~~~~~~~~~~~~~~~--~~~-~~~v~~~~~s-~~~--- 124 (261)
.+++.++...++.+..+ +.|.-+|..+++............ +.. ..++. +... .+|
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~ 323 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR 323 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence 34566666677766554 368888888877543321110000 000 11222 2222 467
Q ss_pred cEEEEeccCCeEEEEEccCceEEeeccccC------------C-ce--------------------------eEEEEcCC
Q 024868 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAH------------K-SV--------------------------LDMDFSLD 165 (261)
Q Consensus 125 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------------~-~v--------------------------~~~~~s~~ 165 (261)
+.++.++.+|.++++|.++++.+....... + ++ ..++++|+
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~ 403 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPK 403 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred EEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCC
Confidence 467778899999999999998776443111 0 11 24567776
Q ss_pred CCEEEEe---------------------------------c------CCCcEEEEEccCCcEEEEEeecCCCceEEEEEe
Q 024868 166 SEFLATT---------------------------------S------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS 206 (261)
Q Consensus 166 ~~~l~~~---------------------------------~------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 206 (261)
..++++. + .+|.+.-||+.+++.+.+..... +...-...
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~ 481 (599)
T 1w6s_A 404 RELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF--AVWGGTMA 481 (599)
T ss_dssp TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS--CCCSBCEE
T ss_pred CCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC--CccCcceE
Confidence 6655442 1 34789999999999887775432 12221233
Q ss_pred cCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcC-eeEEEEeeCCCE
Q 024868 207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKP-ASVLSISLDGKY 258 (261)
Q Consensus 207 p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~s~dg~~ 258 (261)
..+.. ++.++.|+.++.||.++|+.+..+...... ..-+.+..||+.
T Consensus 482 tagg~-----vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 482 TAGDL-----VFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp ETTTE-----EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred ecCCE-----EEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence 35555 455788999999999999998776644322 233666778874
No 267
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.75 E-value=2.4e-06 Score=65.22 Aligned_cols=181 Identities=13% Similarity=0.039 Sum_probs=106.3
Q ss_pred CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC--CeEEEEEc
Q 024868 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--GHLRIMHW 141 (261)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--~~i~~~d~ 141 (261)
.....++|+++++.+++-..++.|..||..+... ... ........++++++|+++++.... ..|..+|.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~--~~~-------~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~ 102 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ--IHA-------TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK 102 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE--EEE-------ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE--EEE-------eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcC
Confidence 4578999999998666655678888887654321 111 112457889999999866554332 24777777
Q ss_pred cCceEEeecc-ccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcE-EEEEee--------cCCCceEEEEEecCCCc
Q 024868 142 PSLRIILDEP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTR--------NSDEKIELCRFSKDGTK 211 (261)
Q Consensus 142 ~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~--------~~~~~v~~~~~~p~~~~ 211 (261)
.+++...... ........++..+++..+++-..++.|+.+|..+++. +..... ..-.....+ +|+++.
T Consensus 103 ~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 103 SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 7766432111 1112334555556665556555688899999876532 211110 011124555 899886
Q ss_pred ceEEEEEeeCCCcEEEEEECCC-CeE--EeeeeccCcCeeEEEEeeCCCEEe
Q 024868 212 PFLFCTVQRGDKALLAVYDIST-WNK--IGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 212 ~~~~~~~~~~~d~~i~~~d~~~-~~~--~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
+| ++....+.|+.||+.. ++. ...+.. ......++++++|++.+
T Consensus 181 ly----v~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~v 227 (306)
T 2p4o_A 181 LY----VSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYG 227 (306)
T ss_dssp EE----EEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEE
T ss_pred EE----EEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEE
Confidence 43 5556678999999874 321 111111 13456788888887543
No 268
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.75 E-value=4.7e-06 Score=65.45 Aligned_cols=191 Identities=12% Similarity=0.103 Sum_probs=110.8
Q ss_pred EEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccc
Q 024868 21 LVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN 100 (261)
Q Consensus 21 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 100 (261)
.+.+++.++ .++.+|..+++... ...+.. ........ .+..+++++.++.++.+|..+++....
T Consensus 105 ~v~v~~~~g--------~l~a~d~~tG~~~W----~~~~~~--~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~ 168 (376)
T 3q7m_A 105 HVYIGSEKA--------QVYALNTSDGTVAW----QTKVAG--EALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWT 168 (376)
T ss_dssp EEEEEETTS--------EEEEEETTTCCEEE----EEECSS--CCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEEEcCCC--------EEEEEECCCCCEEE----EEeCCC--ceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 455566666 88999988776421 112221 11111112 244677788899999999988775333
Q ss_pred eeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCc----ee---EEEEcC--CCCEEEE
Q 024868 101 LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS----VL---DMDFSL--DSEFLAT 171 (261)
Q Consensus 101 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~----v~---~~~~s~--~~~~l~~ 171 (261)
..... ..... ......... +..++++..++.+..+|..+++.+......... +. .+.-.| .+..++.
T Consensus 169 ~~~~~-~~~~~-~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~ 244 (376)
T 3q7m_A 169 VNLDM-PSLSL-RGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFA 244 (376)
T ss_dssp EECCC-------CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEE
T ss_pred EeCCC-Cceee-cCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEE
Confidence 21110 00000 000111122 346777878999999999999887655422110 00 011122 3456777
Q ss_pred ecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868 172 TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (261)
Q Consensus 172 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~ 241 (261)
++.++.+..+|.++|+.+..... . ....+.. ++.. +..+..++.+..+|.++++.+....
T Consensus 245 ~~~~g~l~~~d~~tG~~~w~~~~--~-~~~~~~~--~~~~-----l~~~~~~g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 245 LAYNGNLTALDLRSGQIMWKREL--G-SVNDFIV--DGNR-----IYLVDQNDRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp ECTTSCEEEEETTTCCEEEEECC--C-CEEEEEE--ETTE-----EEEEETTCCEEEEETTTCCEEEEEC
T ss_pred EecCcEEEEEECCCCcEEeeccC--C-CCCCceE--ECCE-----EEEEcCCCeEEEEECCCCcEEEeec
Confidence 78899999999999998766542 2 2444443 3444 3555667889999999998765544
No 269
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.74 E-value=2.3e-05 Score=62.81 Aligned_cols=223 Identities=10% Similarity=-0.014 Sum_probs=123.5
Q ss_pred eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC-
Q 024868 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG- 85 (261)
Q Consensus 7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg- 85 (261)
...++|.|+....++.++-.. + .|+.+++.++.+ . .+......+..++++++|+ |+.+...+
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~-~--------~I~~id~~~g~v------~-~~~~~~~~P~giavd~dG~-lyVad~~~~ 203 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQR-D--------AFRHVDFVNQYV------D-IKTTNIGQCADVNFTLNGD-MVVVDDQSS 203 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBT-S--------CEEEEETTTTEE------E-EECCCCSCEEEEEECTTCC-EEEEECCSC
T ss_pred CceEEEccccCCCEEEEEeCC-C--------CEEEEECCCCEE------E-EeecCCCCccEEEECCCCC-EEEEcCCCC
Confidence 456778763112444444332 4 788888876664 2 2222345688999999999 54444321
Q ss_pred ---c-EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeeccc--cCCcee
Q 024868 86 ---G-CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPK--AHKSVL 158 (261)
Q Consensus 86 ---~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~v~ 158 (261)
. +...+.......... +........++++| ++.++++-..++.|+.+|..++.....+.. ....-.
T Consensus 204 ~~~~gv~~~~~~~~~~~~~~-------~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~ 276 (433)
T 4hw6_A 204 DTNTGIYLFTRASGFTERLS-------LCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNF 276 (433)
T ss_dssp TTSEEEEEECGGGTTCCEEE-------EEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCE
T ss_pred cccceEEEEECCCCeecccc-------ccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcc
Confidence 1 222222211110000 11123456788999 666665655678899999876654222211 112235
Q ss_pred EEEEcCCCCEEE-EecCCCcEEEEEcc--CCcE--EEEEeecC--------------CCceEEEEE---------ecCCC
Q 024868 159 DMDFSLDSEFLA-TTSTDGSARIWKTE--DGVA--WTFLTRNS--------------DEKIELCRF---------SKDGT 210 (261)
Q Consensus 159 ~~~~s~~~~~l~-~~~~d~~i~iwd~~--~~~~--~~~~~~~~--------------~~~v~~~~~---------~p~~~ 210 (261)
.++|+|+++.|+ +-...+.|+.++.. +++. ...+.+.. -.....+++ .++|.
T Consensus 277 ~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~ 356 (433)
T 4hw6_A 277 HIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD 356 (433)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE
T ss_pred cEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc
Confidence 799999998555 44556889998865 2321 12222210 013667888 56665
Q ss_pred cceEEEEEeeCCCcEEEEEECCCCeEEeeeecc------------------CcCeeEEEEe-eCCCEEe
Q 024868 211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL------------------RKPASVLSIS-LDGKYLA 260 (261)
Q Consensus 211 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~------------------~~~v~~~~~s-~dg~~la 260 (261)
. .++-...+.|+.++. ++... .+.+. -.....++++ ++|.+++
T Consensus 357 l-----yvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyV 418 (433)
T 4hw6_A 357 F-----YFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYI 418 (433)
T ss_dssp E-----EEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEE
T ss_pred E-----EEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEE
Confidence 4 355566778999985 55433 22211 0236789999 6666543
No 270
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.73 E-value=4e-05 Score=60.73 Aligned_cols=223 Identities=11% Similarity=-0.061 Sum_probs=123.5
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE-ec
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TT 83 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~ 83 (261)
..+..++|.+.. ..+..+-...+ .|+.+++++..... ............+..+++.+.+..|+.+ ..
T Consensus 112 ~~~~~l~~d~~~--~~lywsD~~~~--------~I~~~~~~g~~~~~--~~~~~~~~~~~~p~glavD~~~~~lY~~d~~ 179 (400)
T 3p5b_L 112 RNVVALDTEVAS--NRIYWSDLSQR--------MICSTQLDRAHGVS--SYDTVISRDIQAPDGLAVDWIHSNIYWTDSV 179 (400)
T ss_dssp SCEEEEEEETTT--TEEEEEETTTT--------EEEEEEC------C--CCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred CcceEEeeeecc--CceEEEecCCC--------eEEEEEcccCCCCC--cceEEEeCCCCCcccEEEEecCCceEEEECC
Confidence 345667776642 44445544455 67777765422100 0122233334567889998855555444 45
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec--cCCeEEEEEccCceEEeeccccCCceeEEE
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~ 161 (261)
.+.|.+.+++.... ..+.. ........++++|.+..|+... ..+.|...++............-.....++
T Consensus 180 ~~~I~~~~~~g~~~-~~l~~------~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~gla 252 (400)
T 3p5b_L 180 LGTVSVADTKGVKR-KTLFR------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT 252 (400)
T ss_dssp TTEEEEECTTTCSE-EEEEE------CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred CCeEEEEeCCCCce-EEEEe------CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEE
Confidence 67788888765542 11111 1234578999999666665553 246788888764333222222234678999
Q ss_pred EcCCCCEEEEe-cCCCcEEEEEccCCcEEEEEeec-CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868 162 FSLDSEFLATT-STDGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (261)
Q Consensus 162 ~s~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~ 239 (261)
++|++..|+.+ ...+.|..+|+............ .-....++++ ++..+| .+....+.|..+|..+|+.+..
T Consensus 253 vd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~ly----wtd~~~~~V~~~~~~~G~~~~~ 326 (400)
T 3p5b_L 253 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVF----WTDIINEAIFSANRLTGSDVNL 326 (400)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEE----EEESSSCSEEEEESSSCCCCEE
T ss_pred EEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEE----EecCCCCeEEEEEcCCCCceEE
Confidence 99877766665 45678999998654433333221 1123556766 334432 4445667899999777766554
Q ss_pred eeccCcCeeEEEE
Q 024868 240 KRLLRKPASVLSI 252 (261)
Q Consensus 240 ~~~~~~~v~~~~~ 252 (261)
+.........+++
T Consensus 327 i~~~~~~p~~i~v 339 (400)
T 3p5b_L 327 LAENLLSPEDMVL 339 (400)
T ss_dssp EECSCSCEEEEEE
T ss_pred EecCCCCCceEEE
Confidence 4433333444443
No 271
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.72 E-value=5.8e-07 Score=72.01 Aligned_cols=155 Identities=6% Similarity=0.078 Sum_probs=97.0
Q ss_pred CceEEEECC-CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-CC----eEEE
Q 024868 65 DPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DG----HLRI 138 (261)
Q Consensus 65 ~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~----~i~~ 138 (261)
....++++| ++..|.++...+.|+.+|..++... .+ .........++|++++++|+++.. ++ .+..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~-------~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~ 209 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TV-------YSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYI 209 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EE-------ECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EE-------ecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEE
Confidence 467899998 4556666655577888887665421 11 113356789999999996666643 11 2343
Q ss_pred EEccCceEE-eeccccCCceeEEEEcC-CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEE
Q 024868 139 MHWPSLRII-LDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC 216 (261)
Q Consensus 139 ~d~~~~~~~-~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~ 216 (261)
++ ..+... ............++++| +|.++++-..++.|+.++..++..............+.++|+|+|+++|
T Consensus 210 ~~-~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~ly--- 285 (430)
T 3tc9_A 210 LT-RESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAY--- 285 (430)
T ss_dssp EE-GGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEE---
T ss_pred Ee-CCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEE---
Confidence 44 333211 01111223457788999 6776667667789999999876643333322223478999999999643
Q ss_pred EEeeCCCcEEEEEECC
Q 024868 217 TVQRGDKALLAVYDIS 232 (261)
Q Consensus 217 ~~~~~~d~~i~~~d~~ 232 (261)
++....+.|..++..
T Consensus 286 -v~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 286 -IVVVNQHYILRSDYD 300 (430)
T ss_dssp -EEETTTTEEEEEEEE
T ss_pred -EEECCCCEEEEEeCC
Confidence 455667789998765
No 272
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.72 E-value=2.5e-05 Score=59.88 Aligned_cols=210 Identities=13% Similarity=0.207 Sum_probs=123.2
Q ss_pred EEE-eeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC----CCe--E-EEEe
Q 024868 11 SWI-KRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS----GDD--F-VCST 82 (261)
Q Consensus 11 ~~~-~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--l-~~~~ 82 (261)
-|. |......+++.....+ -+..||.....+ ..++. +.++.+..-|+ |+. + ++..
T Consensus 31 vw~~~~dp~~s~ii~t~k~~--------gL~Vydl~G~~l-------~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~ 93 (355)
T 3amr_A 31 IWLDPKTPQNSKLITTNKKS--------GLVVYSLDGKML-------HSYNT--GKLNNVDIRYDFPLNGKKVDIAAASN 93 (355)
T ss_dssp EECCSSCGGGCEEEEEETTT--------EEEEEETTSCEE-------EEECC--SCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EecCCCCCCccEEEEEcCCC--------CEEEEcCCCcEE-------EEccC--CCcccEEEecccccCCceEeEEEEeC
Confidence 353 4322345555555555 788999965553 23332 55677776653 222 3 3333
Q ss_pred c---CCcEEEEEEeCCccccceeeeeCCCC-CCCCCeEEEEE--eeC-Cc-EEEEeccCCeEEEEEcc-------CceEE
Q 024868 83 T---NGGCKLFEVYGGATDINLLAKKMPPL-QDAGPQKCLSF--SVD-GS-RFAAGGVDGHLRIMHWP-------SLRII 147 (261)
Q Consensus 83 ~---dg~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~--s~~-~~-~l~~~~~d~~i~~~d~~-------~~~~~ 147 (261)
. +++|.+|++................+ .....+..+++ +|. ++ ++++...+|.+..|++. +.+.+
T Consensus 94 R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lV 173 (355)
T 3amr_A 94 RSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKV 173 (355)
T ss_dssp CSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEE
T ss_pred CCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEE
Confidence 3 47899999953322111111000011 11145666777 664 44 57777788999999883 22333
Q ss_pred eeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEcc-----CCcEEEEEe-ecCCCceEEEEE--ecCCCcceEEEEEe
Q 024868 148 LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-----DGVAWTFLT-RNSDEKIELCRF--SKDGTKPFLFCTVQ 219 (261)
Q Consensus 148 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~-----~~~~~~~~~-~~~~~~v~~~~~--~p~~~~~~~~~~~~ 219 (261)
+.+ ...+.+..+...+....|+.+-.+..|..++.+ +++.+..+. .+....+..+++ .++++. |+ +++
T Consensus 174 R~f-~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~g-yL--ivS 249 (355)
T 3amr_A 174 RAF-KMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKG-YL--MAS 249 (355)
T ss_dssp EEE-ECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCE-EE--EEE
T ss_pred EEe-cCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCE-EE--EEE
Confidence 333 334578899999988889999888767777754 344554442 222234788888 456662 22 466
Q ss_pred eCCCcEEEEEECC-CCeEEeeee
Q 024868 220 RGDKALLAVYDIS-TWNKIGHKR 241 (261)
Q Consensus 220 ~~~d~~i~~~d~~-~~~~~~~~~ 241 (261)
+..++++.+||.+ +.+.+..+.
T Consensus 250 sQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 250 SQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EGGGTEEEEEESSTTCCEEEEEE
T ss_pred cCCCCEEEEEECCCCCcEEEEEE
Confidence 6677899999996 566665554
No 273
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.67 E-value=1.3e-05 Score=67.93 Aligned_cols=157 Identities=16% Similarity=0.189 Sum_probs=99.8
Q ss_pred CCeEEEEecCCcEEEEEEeCCccccceeeeeCC-CCCC-CCCeEEEEEeeCCcEEEEecc------CCeEEEEEccCceE
Q 024868 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMP-PLQD-AGPQKCLSFSVDGSRFAAGGV------DGHLRIMHWPSLRI 146 (261)
Q Consensus 75 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-~~~~-~~~v~~~~~s~~~~~l~~~~~------d~~i~~~d~~~~~~ 146 (261)
+..+++++.|+.|+.+|..+++...+....... .... ..++ . .++ .++++.. ++.|+.+|.++++.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~----v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~ 190 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPR----V-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKL 190 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCE----E-ETT-EEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCE----E-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcE
Confidence 557888888999999999988764443211000 0000 1111 1 144 4555432 58999999999998
Q ss_pred EeeccccC-C------------------------------ceeEEEEcCCCCEEEEecCCC-------------------
Q 024868 147 ILDEPKAH-K------------------------------SVLDMDFSLDSEFLATTSTDG------------------- 176 (261)
Q Consensus 147 ~~~~~~~~-~------------------------------~v~~~~~s~~~~~l~~~~~d~------------------- 176 (261)
+....... . ....++++|+...++.++.++
T Consensus 191 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~ 270 (668)
T 1kv9_A 191 AWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLS 270 (668)
T ss_dssp EEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence 77654210 0 112468888888888887665
Q ss_pred cEEEEEccCCcEEEEEeecC-C-------CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868 177 SARIWKTEDGVAWTFLTRNS-D-------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (261)
Q Consensus 177 ~i~iwd~~~~~~~~~~~~~~-~-------~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~ 239 (261)
.|..+|.++|+.+..++... . .+.....+..+|+.. -.++.++.+|.++++|.++|+.+..
T Consensus 271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~--~~v~~~~~~G~l~~lD~~tG~~l~~ 339 (668)
T 1kv9_A 271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPR--KVLMQAPKNGFFYVLDRTNGKLISA 339 (668)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEE--EEEEECCTTSEEEEEETTTCCEEEE
T ss_pred eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEE--EEEEEECCCCEEEEEECCCCCEecc
Confidence 39999999999988876431 1 122223334467521 0157788999999999999998743
No 274
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.66 E-value=7.5e-05 Score=59.20 Aligned_cols=180 Identities=8% Similarity=-0.015 Sum_probs=109.6
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cCCcEEEEEEeCCcc---ccceeeeeCCCCCCCC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGAT---DINLLAKKMPPLQDAG 113 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~---~~~~~~~~~~~~~~~~ 113 (261)
.|..++.+.... .... .....+..++|++....|..+. ..+.|+.+++..... ..... .....
T Consensus 93 ~I~~i~l~~~~~------~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~------~~~~~ 159 (400)
T 3p5b_L 93 EVRKMTLDRSEY------TSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI------SRDIQ 159 (400)
T ss_dssp EEEEECTTSCSC------EEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE------CSSCS
T ss_pred eeEEEccCCcce------eEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE------eCCCC
Confidence 677777766543 2222 2345788999998766665554 457788888765321 01111 11234
Q ss_pred CeEEEEEeeC-CcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEec--CCCcEEEEEccCCcEEE
Q 024868 114 PQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWT 190 (261)
Q Consensus 114 ~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~iwd~~~~~~~~ 190 (261)
....+++.+. ++++++-...+.|.+.+++.................++++|.+.+|+... ..+.|...++.......
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~ 239 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 239 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE
Confidence 5788999984 44445555678899999865543333323334578999999666555543 24788888886443333
Q ss_pred EEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868 191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (261)
Q Consensus 191 ~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~ 235 (261)
...... .....++++|++..+| .+-...+.|..+|+....
T Consensus 240 ~~~~~l-~~P~glavd~~~~~lY----~aD~~~~~I~~~d~dG~~ 279 (400)
T 3p5b_L 240 LVTENI-QWPNGITLDLLSGRLY----WVDSKLHSISSIDVNGGN 279 (400)
T ss_dssp EECSSC-SCEEEEEEETTTTEEE----EEETTTTEEEEEETTSCC
T ss_pred EEECCC-CceEEEEEEeCCCEEE----EEECCCCEEEEEeCCCCc
Confidence 333222 3588999999888744 344556789999987543
No 275
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.65 E-value=6.2e-05 Score=57.68 Aligned_cols=178 Identities=8% Similarity=-0.020 Sum_probs=106.8
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cCCcEEEEEEeCC---ccccceeeeeCCCCCCCC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGG---ATDINLLAKKMPPLQDAG 113 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~---~~~~~~~~~~~~~~~~~~ 113 (261)
.|..+|..+... ...+. ....+..++|+++++.|+.+. ..+.|+.+++.+. ....... . ....
T Consensus 11 ~I~~i~~~~~~~------~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~----~--~~~~ 77 (316)
T 1ijq_A 11 EVRKMTLDRSEY------TSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI----S--RDIQ 77 (316)
T ss_dssp SEEEEETTSCCC------EEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE----C--SSCS
T ss_pred eEEEEECCCcce------Eehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE----e--CCCC
Confidence 467777766543 22222 235678999998766665554 4578988988762 1111111 0 1123
Q ss_pred CeEEEEEeeCCcEE-EEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC-C-CcEEEEEccCCcEEE
Q 024868 114 PQKCLSFSVDGSRF-AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-D-GSARIWKTEDGVAWT 190 (261)
Q Consensus 114 ~v~~~~~s~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d-~~i~iwd~~~~~~~~ 190 (261)
....+++++.+..| ++-...+.|.+++...................++++|.+..|+.+.. . +.|...++. |+...
T Consensus 78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~ 156 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIY 156 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEE
T ss_pred CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeE
Confidence 45789998755444 44456788999997644332222222346789999996665554443 2 678888875 44333
Q ss_pred EEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868 191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (261)
Q Consensus 191 ~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~ 233 (261)
.+....-.....++++|++..+| .+-...+.|..+|+..
T Consensus 157 ~~~~~~~~~P~gla~d~~~~~lY----~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 157 SLVTENIQWPNGITLDLLSGRLY----WVDSKLHSISSIDVNG 195 (316)
T ss_dssp EEECSSCSCEEEEEEETTTTEEE----EEETTTTEEEEEETTS
T ss_pred EEEECCCCCceEEEEeccCCEEE----EEECCCCeEEEEecCC
Confidence 33222223578999999888743 4455667899999874
No 276
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.63 E-value=4.7e-05 Score=58.38 Aligned_cols=200 Identities=9% Similarity=-0.044 Sum_probs=114.1
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE-ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeE
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK 116 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~ 116 (261)
.|..+++++..... ...+.+ ...+..++|.+....|... ...+.|+.++..+.......... ......
T Consensus 14 ~I~~i~l~~~~~~~----~~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~------~l~~p~ 82 (318)
T 3sov_A 14 DLRLVDATNGKENA----TIVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS------GLLSPD 82 (318)
T ss_dssp EEEEEETTCTTSCC----EEEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE------CCSCCC
T ss_pred eEEEEECCCCceEE----EEEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC------CCCCcc
Confidence 67778877653100 111211 1346789999865555544 44677888887765321111111 123457
Q ss_pred EEEEeeCC-cEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEec--CCCcEEEEEccCCcEEEEEe
Q 024868 117 CLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLT 193 (261)
Q Consensus 117 ~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~ 193 (261)
.+++.+.+ +++++-...+.|.++++..................+++.|.+..|+.+. ..+.|...++.... ...+.
T Consensus 83 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~ 161 (318)
T 3sov_A 83 GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIII 161 (318)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEE
T ss_pred EEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEE
Confidence 79999754 4445545677899999764433222223334678999999766555544 35778888876433 23332
Q ss_pred ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEe
Q 024868 194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS 253 (261)
Q Consensus 194 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 253 (261)
...-.....++++|++..+| .+-...+.|..+|+..................+++.
T Consensus 162 ~~~l~~Pnglavd~~~~~lY----~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~ 217 (318)
T 3sov_A 162 NSEIYWPNGLTLDYEEQKLY----WADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF 217 (318)
T ss_dssp CSSCSCEEEEEEETTTTEEE----EEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE
T ss_pred ECCCCCccEEEEeccCCEEE----EEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe
Confidence 22223478999999887743 445567789999987433221122122334555554
No 277
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.63 E-value=0.00012 Score=63.36 Aligned_cols=187 Identities=9% Similarity=0.049 Sum_probs=114.3
Q ss_pred CCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEcc
Q 024868 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (261)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 142 (261)
...|.++...++|...+ |+.+| |.+|+..+...............-....|.++...++|.+- .|+.++-|..++..
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPI 338 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGG
T ss_pred CCeEEEEEEcCCCCEEE-EeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCC
Confidence 35689999998887554 44555 88888765542110000000011123579999999888754 45566668888876
Q ss_pred CceEEeecc-c-----cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeec-------CCCceEEEEEecCC
Q 024868 143 SLRIILDEP-K-----AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN-------SDEKIELCRFSKDG 209 (261)
Q Consensus 143 ~~~~~~~~~-~-----~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~v~~~~~~p~~ 209 (261)
+........ . ....|.++...++|++. .|+.++-+..||..+++........ ....|.++...++|
T Consensus 339 ~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g 417 (795)
T 4a2l_A 339 RNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK 417 (795)
T ss_dssp GGSSEEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT
T ss_pred cccceEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC
Confidence 544221111 0 12358999888888744 4666777999998876644322111 12358899888888
Q ss_pred C-cceEEEEEeeCCCcEEEEEECCCCeEEeeee----ccCcCeeEEEEeeCCCEE
Q 024868 210 T-KPFLFCTVQRGDKALLAVYDISTWNKIGHKR----LLRKPASVLSISLDGKYL 259 (261)
Q Consensus 210 ~-~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~----~~~~~v~~~~~s~dg~~l 259 (261)
+ . ..+..++-|..||.++++...... .....|.++...++|+..
T Consensus 418 ~~l------Wigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lw 466 (795)
T 4a2l_A 418 SLV------YIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLW 466 (795)
T ss_dssp TEE------EEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEE
T ss_pred CEE------EEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEE
Confidence 8 4 334455569999998776432211 123568888888888754
No 278
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.59 E-value=0.00015 Score=62.78 Aligned_cols=186 Identities=13% Similarity=0.102 Sum_probs=115.4
Q ss_pred CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC
Q 024868 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (261)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 143 (261)
..|.++...++|... .|+.++-|..|+.................+ ....|.++...++|++- +|+.++-|..|+..+
T Consensus 310 ~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l-~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~ 386 (795)
T 4a2l_A 310 RSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSL-SDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPIT 386 (795)
T ss_dssp SCEEEEEECTTSCEE-EEESSSCEEEECGGGGSSEEECCCTTSSSC-SCSSEEEEEECTTSCEE-EEESSSCEEEECTTT
T ss_pred CcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccceEEcCCCCCCCC-CCCeeEEEEECCCCCEE-EEECCCCeEEEcCCC
Confidence 569999999988744 556655588888655432110000000011 23568899888888644 455666699999876
Q ss_pred ceEEeeccc--------cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee---cCCCceEEEEEecCCCcc
Q 024868 144 LRIILDEPK--------AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR---NSDEKIELCRFSKDGTKP 212 (261)
Q Consensus 144 ~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~ 212 (261)
+........ ....|.++...++|+.|..|+.++.+..||..+++....... .....|.++...++|+.
T Consensus 387 ~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l- 465 (795)
T 4a2l_A 387 QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNL- 465 (795)
T ss_dssp CCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCE-
T ss_pred CcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCE-
Confidence 654322111 124688999888888566666767799999888765432210 11235889988888875
Q ss_pred eEEEEEeeCCCcEEEEEECCCCeEEeeee------ccCcCeeEEEEeeCCCEE
Q 024868 213 FLFCTVQRGDKALLAVYDISTWNKIGHKR------LLRKPASVLSISLDGKYL 259 (261)
Q Consensus 213 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~------~~~~~v~~~~~s~dg~~l 259 (261)
..+..+| +.+||..+++...... .....|.++...++|+..
T Consensus 466 -----wigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW 512 (795)
T 4a2l_A 466 -----WLGTLSA-LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLW 512 (795)
T ss_dssp -----EEEESSC-EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEE
T ss_pred -----EEEecCc-eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEE
Confidence 2233344 8899988776432211 123568888888888754
No 279
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.57 E-value=6.2e-06 Score=66.09 Aligned_cols=156 Identities=9% Similarity=0.060 Sum_probs=93.3
Q ss_pred CceEEEECCC--CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC---Ce-EEE
Q 024868 65 DPMTIAVNPS--GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GH-LRI 138 (261)
Q Consensus 65 ~v~~~~~~~~--~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~-i~~ 138 (261)
....++|+|+ ...|+.+...+.|+.++..++.... ..........++++++|+++++-... .. +..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~--------~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~ 211 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI--------KTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYL 211 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE--------ECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE--------eecCCCCccEEEECCCCCEEEEcCCCCcccceEEE
Confidence 4678999984 4456555554788888886655311 11123567899999999944443211 12 333
Q ss_pred EEccCceEEeeccccCCceeEEEEcC-CCCEEEEecCCCcEEEEEccCCcEEEEEe-ecCCCceEEEEEecCCCcceEEE
Q 024868 139 MHWPSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLT-RNSDEKIELCRFSKDGTKPFLFC 216 (261)
Q Consensus 139 ~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~~~~~ 216 (261)
.+...+...............++++| +|.++++-..++.|+.+|..+++....+. .........++|+|+|+++|
T Consensus 212 ~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LY--- 288 (433)
T 4hw6_A 212 FTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAY--- 288 (433)
T ss_dssp ECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEE---
T ss_pred EECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEE---
Confidence 33221111001111223457788999 67666666677889999988777633332 22222245799999999643
Q ss_pred EEeeCCCcEEEEEECC
Q 024868 217 TVQRGDKALLAVYDIS 232 (261)
Q Consensus 217 ~~~~~~d~~i~~~d~~ 232 (261)
++-...+.|+.++..
T Consensus 289 -vad~~~~~I~~~~~d 303 (433)
T 4hw6_A 289 -IIYNGKHCIYRVDYN 303 (433)
T ss_dssp -EEETTTTEEEEEEBC
T ss_pred -EEeCCCCEEEEEeCC
Confidence 455667789998865
No 280
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.51 E-value=4.3e-05 Score=63.69 Aligned_cols=165 Identities=10% Similarity=0.057 Sum_probs=99.8
Q ss_pred EEECCCCCe----EEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeE-EEEEeeCCcEEEEec------cCCeEE
Q 024868 69 IAVNPSGDD----FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK-CLSFSVDGSRFAAGG------VDGHLR 137 (261)
Q Consensus 69 ~~~~~~~~~----l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~------~d~~i~ 137 (261)
++++|.+.. ++.++.|+.|+-+|..+++...+...... .....+. .... .++ .+++++ .++.|+
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~---~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~ 185 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDI---KVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLT 185 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCG---GGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCC---CccceeecCCEE-ECC-EEEEEecccccCCCCeEE
Confidence 455444444 77888899999999988876443221110 0000111 1111 144 445544 378999
Q ss_pred EEEccCceEEeeccccCCc-------------------------------------e-eEEEEcCCCCEEEEecCC----
Q 024868 138 IMHWPSLRIILDEPKAHKS-------------------------------------V-LDMDFSLDSEFLATTSTD---- 175 (261)
Q Consensus 138 ~~d~~~~~~~~~~~~~~~~-------------------------------------v-~~~~~s~~~~~l~~~~~d---- 175 (261)
-+|.++++.+.+....... + ..+++.++...++.++.+
T Consensus 186 A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~ 265 (599)
T 1w6s_A 186 AYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPW 265 (599)
T ss_dssp EEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCS
T ss_pred EEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccc
Confidence 9999999987665432211 0 134566777777776654
Q ss_pred ------------CcEEEEEccCCcEEEEEeecCC---------CceEEEEEe-cCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868 176 ------------GSARIWKTEDGVAWTFLTRNSD---------EKIELCRFS-KDGTKPFLFCTVQRGDKALLAVYDIST 233 (261)
Q Consensus 176 ------------~~i~iwd~~~~~~~~~~~~~~~---------~~v~~~~~~-p~~~~~~~~~~~~~~~d~~i~~~d~~~ 233 (261)
+.|.-+|.++|+.+..++.... .++. +... .+|+..- .++.++.+|.++++|.++
T Consensus 266 ~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~--~v~~~~~~G~l~~lD~~t 342 (599)
T 1w6s_A 266 NETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARK--LLTHPDRNGIVYTLDRTD 342 (599)
T ss_dssp CGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEE--EEEEECTTSEEEEEETTT
T ss_pred cCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEE--EEEEECCCcEEEEEECCC
Confidence 3799999999999888765322 1111 2222 4674211 146688999999999999
Q ss_pred CeEEeeee
Q 024868 234 WNKIGHKR 241 (261)
Q Consensus 234 ~~~~~~~~ 241 (261)
|+.+....
T Consensus 343 G~~lw~~~ 350 (599)
T 1w6s_A 343 GALVSANK 350 (599)
T ss_dssp CCEEEEEE
T ss_pred CCEeeccc
Confidence 99875543
No 281
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.50 E-value=0.00027 Score=60.79 Aligned_cols=165 Identities=7% Similarity=-0.096 Sum_probs=98.9
Q ss_pred CCCceEEEECCCCCeEEEEe-cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEe-ccCCeEEEEE
Q 024868 63 EGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMH 140 (261)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~~~d 140 (261)
...+..++|.+....|+.+. ..+.|+.+++.......... ... .........|++.+.++.|+.+ ...+.|.+.+
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~-~vi--~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ 499 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD-TVI--SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 499 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE-EEE--CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCccee-EEE--ecCCCCcceeeeeecCCcEEEEecCCCeEEEEe
Confidence 45678999998655555444 45778888886532100000 000 0123456789999877555544 4678899999
Q ss_pred ccCceEEeeccccCCceeEEEEcCCCCEEEEec-C-CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEE
Q 024868 141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-T-DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218 (261)
Q Consensus 141 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~ 218 (261)
+..................|+++|.+.+|+.+. . .+.|...++..... ..+....-.....+++++.+..+| +
T Consensus 500 ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~-~~lv~~~l~~P~GLavD~~~~~LY----w 574 (791)
T 3m0c_C 500 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLY----W 574 (791)
T ss_dssp TTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECSSCSCEEEEEEETTTTEEE----E
T ss_pred CCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-EEEEeCCCCCceEEEEecCCCeEE----E
Confidence 865443222222334678999999766565543 2 36788888864443 333322223588999998887744 3
Q ss_pred eeCCCcEEEEEECCCCe
Q 024868 219 QRGDKALLAVYDISTWN 235 (261)
Q Consensus 219 ~~~~d~~i~~~d~~~~~ 235 (261)
+-...+.|..+|+....
T Consensus 575 aD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 575 VDSKLHSISSIDVNGGN 591 (791)
T ss_dssp EETTTTEEEEEETTSCS
T ss_pred EeCCCCcEEEEecCCCc
Confidence 34556789999986543
No 282
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.49 E-value=0.00037 Score=60.01 Aligned_cols=210 Identities=11% Similarity=-0.050 Sum_probs=116.7
Q ss_pred eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cCC
Q 024868 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNG 85 (261)
Q Consensus 7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg 85 (261)
+..++|.+. ...++++-...+ .|+.++.++..... .....+......+..|++.+.++.|+.+. ..+
T Consensus 426 ~~gl~~d~~--~~~lY~sD~~~~--------~I~~~~l~g~~~~~--~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~ 493 (791)
T 3m0c_C 426 VVALDTEVA--SNRIYWSDLSQR--------MICSTQLDRAHGVS--SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG 493 (791)
T ss_dssp EEEEEEETT--TTEEEEEETTTT--------EEEEEEC----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTT
T ss_pred eEEEeeccc--CCeeEEeeccce--------eEEEEeccCCCCCc--ceeEEEecCCCCcceeeeeecCCcEEEEecCCC
Confidence 344555542 234444444444 66666665421100 11223333445677899988776665544 457
Q ss_pred cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec--cCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (261)
Q Consensus 86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 163 (261)
.|.+.++..... ..+.. ........|+++|.+..|+.+. ..+.|...++............-.....|+++
T Consensus 494 ~I~v~~ldG~~~-~~l~~------~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD 566 (791)
T 3m0c_C 494 TVSVADTKGVKR-KTLFR------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLD 566 (791)
T ss_dssp EEEEEETTSSSE-EEEEE------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEE
T ss_pred eEEEEeCCCCeE-EEEEe------CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEe
Confidence 888888875442 11111 1224578999999765665553 23678888876444322222233467899999
Q ss_pred CCCCEEEEe-cCCCcEEEEEccCCcEEEEEeecC-CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868 164 LDSEFLATT-STDGSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (261)
Q Consensus 164 ~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~ 241 (261)
+.+..|+.+ ...+.|..+++........+.... -....++++. +.++| .+-...+.|...|..+++.+..+.
T Consensus 567 ~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lY----wtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 567 LLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVF----WTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEE----EEETTTTEEEEEETTTCCCCEEEE
T ss_pred cCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEE----EEECCCCEEEEEeCCCCcceEEee
Confidence 876666655 445789999986544433333211 1124566653 44432 555667789999987776554443
No 283
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.45 E-value=6e-05 Score=62.73 Aligned_cols=78 Identities=15% Similarity=0.182 Sum_probs=55.1
Q ss_pred CCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868 133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (261)
Q Consensus 133 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 211 (261)
+|.|.-||+.+++.+.+..... ++..-.....+.+++.++.|+.++.||.++|+.+.++.........-+.|..+|++
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q 542 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence 5789999999999877664332 22221222246677789999999999999999999887654322233667789986
No 284
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.40 E-value=1.9e-06 Score=73.27 Aligned_cols=176 Identities=10% Similarity=-0.059 Sum_probs=97.6
Q ss_pred CceEEEECCCCCeEEEE-ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc--CCeEEEEEc
Q 024868 65 DPMTIAVNPSGDDFVCS-TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRIMHW 141 (261)
Q Consensus 65 ~v~~~~~~~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~~~d~ 141 (261)
.+..+++.+.+..|+.+ ...+.|.++++..... ..+.. ........++++|.+.+|+.+.. .+.|..+++
T Consensus 454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~-~~l~~------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~ 526 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFR------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 526 (699)
T ss_dssp -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCE-EEECC------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCS
T ss_pred CcceEEEEeeCCcEEEEeccCCeEEEEecCCCce-EEEEe------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeC
Confidence 45678888655444443 4467898888765432 11110 11234577899997666555542 267887776
Q ss_pred cCceEEeeccccCCceeEEEEcCCCCEEE-EecCCCcEEEEEccCCcEEEEEeec-CCCceEEEEEecCCCcceEEEEEe
Q 024868 142 PSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQ 219 (261)
Q Consensus 142 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~~~~~~~~ 219 (261)
............-.....|+|+|++..|+ +-+..+.|..+|+........+... .......+++..+ .+ .++
T Consensus 527 dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~l----ywt 600 (699)
T 1n7d_A 527 NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KV----FWT 600 (699)
T ss_dssp SSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EE----EEE
T ss_pred CCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EE----EEE
Confidence 53222111112223467899999765554 4455678999998643332222211 1112445666443 42 244
Q ss_pred eCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEe
Q 024868 220 RGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS 253 (261)
Q Consensus 220 ~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 253 (261)
....+.|..+|..+++.+..+.........+++.
T Consensus 601 d~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 601 DIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF 634 (699)
T ss_dssp CSTTTCEEEEETTTEEEEECCCTTCSSCCCCCBC
T ss_pred eCCCCeEEEEEccCCCceEEeecCCCCCcEEEEe
Confidence 5666789999988888765554332334444443
No 285
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.40 E-value=7.4e-05 Score=57.32 Aligned_cols=169 Identities=14% Similarity=0.232 Sum_probs=102.7
Q ss_pred CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC----CcE--EEEe-c-c--CCeEEEEEcc-
Q 024868 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD----GSR--FAAG-G-V--DGHLRIMHWP- 142 (261)
Q Consensus 74 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~--l~~~-~-~--d~~i~~~d~~- 142 (261)
...+++.....+-+.+||+. ++. ...+. .+.++.+..-|+ |+. ++.+ . . +++|.+|++.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~-G~~--------l~~~~-~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp 108 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLD-GKM--------LHSYN-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG 108 (355)
T ss_dssp GGCEEEEEETTTEEEEEETT-SCE--------EEEEC-CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECT
T ss_pred CccEEEEEcCCCCEEEEcCC-CcE--------EEEcc-CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECC
Confidence 34456666677789999994 443 11122 245666666663 332 3333 3 3 5789999773
Q ss_pred -CceEEeeccc------cC-CceeEEEE--cCC-CC-EEEEecCCCcEEEEEcc-------CCcEEEEEeecCCCceEEE
Q 024868 143 -SLRIILDEPK------AH-KSVLDMDF--SLD-SE-FLATTSTDGSARIWKTE-------DGVAWTFLTRNSDEKIELC 203 (261)
Q Consensus 143 -~~~~~~~~~~------~~-~~v~~~~~--s~~-~~-~l~~~~~d~~i~iwd~~-------~~~~~~~~~~~~~~~v~~~ 203 (261)
+++ +..... .. ..+..+++ +|. ++ +++....+|.+..|++. +.+.++++... ..+..+
T Consensus 109 ~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg--sq~Egc 185 (355)
T 3amr_A 109 KNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN--SQTEGM 185 (355)
T ss_dssp TTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS--SCEEEE
T ss_pred CCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC--CCcceE
Confidence 333 333311 11 45677887 774 44 67777888999999883 34566777644 358889
Q ss_pred EEecCCCcceEEEEEeeCCCcEEEEEECC-----CCeEEeeee--ccCcCeeEEEE--eeCCC-EEe
Q 024868 204 RFSKDGTKPFLFCTVQRGDKALLAVYDIS-----TWNKIGHKR--LLRKPASVLSI--SLDGK-YLA 260 (261)
Q Consensus 204 ~~~p~~~~~~~~~~~~~~~d~~i~~~d~~-----~~~~~~~~~--~~~~~v~~~~~--s~dg~-~la 260 (261)
...+...+ ++.+.++.-|..||.+ +++.+.... .....+..|++ .++|+ ||+
T Consensus 186 vvDd~~g~-----Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLi 247 (355)
T 3amr_A 186 AADDEYGR-----LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLM 247 (355)
T ss_dssp EEETTTTE-----EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEE
T ss_pred EEcCCCCe-----EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEE
Confidence 99988777 4667777668888865 344553332 12246777877 45555 554
No 286
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.39 E-value=0.0001 Score=56.12 Aligned_cols=167 Identities=11% Similarity=0.052 Sum_probs=106.6
Q ss_pred eecCCCCCceEEEECCCCCeEEEEe-cCCcEEEEEEeCCccccceeeeeCCCCC--C--CCCeEEEEE---eeCCcEEEE
Q 024868 58 VFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQ--D--AGPQKCLSF---SVDGSRFAA 129 (261)
Q Consensus 58 ~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~--~--~~~v~~~~~---s~~~~~l~~ 129 (261)
.++....-..+++|.+....|..++ ..++|..|+...+..... ...... . ...+..+.| .|+++++++
T Consensus 7 ~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~----~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv 82 (334)
T 2p9w_A 7 DVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV----VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAV 82 (334)
T ss_dssp EECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE----CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEE
T ss_pred EecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE----ecCCccccCCCcceeeEEEEeccCCCCcEEEE
Confidence 3444455567899988666666665 689999999875432111 111111 1 124589999 688888776
Q ss_pred ecc-------------CCeEEEEEcc---CceEEeecc--c-----------cCCceeEEEEcCCCCEEEEecCC-CcEE
Q 024868 130 GGV-------------DGHLRIMHWP---SLRIILDEP--K-----------AHKSVLDMDFSLDSEFLATTSTD-GSAR 179 (261)
Q Consensus 130 ~~~-------------d~~i~~~d~~---~~~~~~~~~--~-----------~~~~v~~~~~s~~~~~l~~~~~d-~~i~ 179 (261)
... +..+..||+. +++...... . .......++..++|+..++++.. +.|.
T Consensus 83 ~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~ 162 (334)
T 2p9w_A 83 MKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIA 162 (334)
T ss_dssp EEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEE
T ss_pred EcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEE
Confidence 432 5779999998 676543321 0 11247899999999988888877 7777
Q ss_pred EEEccCCcEEEEEeecC-----CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868 180 IWKTEDGVAWTFLTRNS-----DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (261)
Q Consensus 180 iwd~~~~~~~~~~~~~~-----~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~ 234 (261)
..+... +.+..+.... ....+.++++|+|+.+ +.....+.|..+|+++.
T Consensus 163 rV~pdG-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~L-----iv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 163 RVSADG-KTVSTFAWESGNGGQRPGYSGITFDPHSNKL-----IAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EECTTS-CCEEEEEECCCCSSSCCSCSEEEEETTTTEE-----EEESSSSSEEEEECSSS
T ss_pred EEeCCC-CEEeeeeecCCCcccccCcceEEEeCCCCEE-----EEEcCCCeEEEEcCCCC
Confidence 766543 3333322111 1126689999999973 33433899999998754
No 287
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.38 E-value=0.00054 Score=55.42 Aligned_cols=160 Identities=6% Similarity=-0.048 Sum_probs=92.2
Q ss_pred eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecC---CCCCceEEEE-------CCCCC
Q 024868 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE---SEGDPMTIAV-------NPSGD 76 (261)
Q Consensus 7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~-------~~~~~ 76 (261)
...++|.|.. ..+++++-.... .|+.+|..+..+ ...... .......++| +++++
T Consensus 141 p~~la~dp~~-~~~Lyv~~~~~~--------~i~~ID~~~~~v------~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~ 205 (496)
T 3kya_A 141 NGRLAFDPLN-KDHLYICYDGHK--------AIQLIDLKNRML------SSPLNINTIPTNRIRSIAFNKKIEGYADEAE 205 (496)
T ss_dssp EEEEEEETTE-EEEEEEEEETEE--------EEEEEETTTTEE------EEEECCTTSSCSBEEEEEECCCBTTTBCTTC
T ss_pred CCEEEEccCC-CCEEEEEECCCC--------eEEEEECCCCEE------EEEEccCccccCCCcEEEEeecccccCCCCC
Confidence 4567787621 255666555444 789999988775 222222 1235889999 99999
Q ss_pred eEEEEecCC-c------EEEEEEeC-CccccceeeeeCCCCCCCCCeEEEEEeeC-CcEEEEeccCCeEEEEEcc-----
Q 024868 77 DFVCSTTNG-G------CKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWP----- 142 (261)
Q Consensus 77 ~l~~~~~dg-~------i~i~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~----- 142 (261)
.|+++...+ . +.+++... +.............. .....++++|+ +.++++-..++.|..+|+.
T Consensus 206 ~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~---~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~ 282 (496)
T 3kya_A 206 YMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY---KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKT 282 (496)
T ss_dssp EEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE---SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHH
T ss_pred EEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC---CCceEEEEcCCCCeEEEEECCCCEEEEEeccccccc
Confidence 777665553 2 55554333 111100000001111 23456888995 5555555678889999987
Q ss_pred --CceE-----------Eee--ccccCCceeEEEEcCCCCEEEE-ecCCCcEEEEEcc
Q 024868 143 --SLRI-----------ILD--EPKAHKSVLDMDFSLDSEFLAT-TSTDGSARIWKTE 184 (261)
Q Consensus 143 --~~~~-----------~~~--~~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~iwd~~ 184 (261)
++.. ... ..........++|+|+|+.|+. -+....|+.++..
T Consensus 283 ~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 283 IKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp HHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 4432 011 1122234679999999995444 4566788886654
No 288
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.36 E-value=0.00012 Score=60.85 Aligned_cols=159 Identities=9% Similarity=0.022 Sum_probs=95.6
Q ss_pred CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeE-EEEEeeCCcEEEEecc------CCeEEEEEccCceEE
Q 024868 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK-CLSFSVDGSRFAAGGV------DGHLRIMHWPSLRII 147 (261)
Q Consensus 75 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~------d~~i~~~d~~~~~~~ 147 (261)
+..+++++.|+.++.+|..+++...+...... .....+. .... .++ .+++++. ++.|+.+|.++++.+
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~---~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 189 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDP---KVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELK 189 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCG---GGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCC---CccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEE
Confidence 55777888899999999988876443221110 0000111 1111 144 4455543 789999999999987
Q ss_pred eeccccCCc--------------------------------------eeEEEEcCCCCEEEEecCC--------------
Q 024868 148 LDEPKAHKS--------------------------------------VLDMDFSLDSEFLATTSTD-------------- 175 (261)
Q Consensus 148 ~~~~~~~~~--------------------------------------v~~~~~s~~~~~l~~~~~d-------------- 175 (261)
.+....... ...+++.++...++.++.+
T Consensus 190 W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~ 269 (571)
T 2ad6_A 190 WRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNK 269 (571)
T ss_dssp EEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred EEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCce
Confidence 655432110 0235566766666665532
Q ss_pred --CcEEEEEccCCcEEEEEeecC---------CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868 176 --GSARIWKTEDGVAWTFLTRNS---------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (261)
Q Consensus 176 --~~i~iwd~~~~~~~~~~~~~~---------~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~ 241 (261)
+.|..+|.++|+.+..++... ..++ -+...++|+...+ ++.++.+|.++++|.++|+.+....
T Consensus 270 y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~--v~~~~~~G~l~~lD~~tG~~~w~~~ 343 (571)
T 2ad6_A 270 WTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPL--LSHIDRNGILYTLNRENGNLIVAEK 343 (571)
T ss_dssp TTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEE--EEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEE--EEEeCCCcEEEEEECCCCCEEeeec
Confidence 359999999999988776431 1112 1222357752111 4667889999999999999875544
No 289
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.35 E-value=0.00037 Score=54.00 Aligned_cols=164 Identities=8% Similarity=0.024 Sum_probs=95.8
Q ss_pred EEEEEcCCCCceecCCeEEeeecC-----CCCCceEEEECC--CCC-eEEEEe-c--CCcEEEEEEeCCccccceeeeeC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDE-----SEGDPMTIAVNP--SGD-DFVCST-T--NGGCKLFEVYGGATDINLLAKKM 106 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~--~~~-~l~~~~-~--dg~i~i~~~~~~~~~~~~~~~~~ 106 (261)
.|+.+|+++.... .....+.+ ..-....+.+.+ ++. +|+++. . +.++.+|+++.............
T Consensus 84 ~I~~~d~~~~~~~---~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 84 KILLMDLNEKEPA---VSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp EEEEEETTSSSCC---EEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred eEEEEecCCCCCc---eEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 8889998743211 11222322 234677888755 454 444443 2 46788998876543333222211
Q ss_pred CCCCCCCCeEEEEEeeCCcEEEEec---c--------------CCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEE
Q 024868 107 PPLQDAGPQKCLSFSVDGSRFAAGG---V--------------DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFL 169 (261)
Q Consensus 107 ~~~~~~~~v~~~~~s~~~~~l~~~~---~--------------d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 169 (261)
. ......+++.+.++|++.++.. . .|.++-+|. ++. ......-.....++|+||++.+
T Consensus 161 g--~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~spDg~~l 235 (355)
T 3sre_A 161 H--KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINISPDGKYV 235 (355)
T ss_dssp C--TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEECTTSSEE
T ss_pred c--CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-EEeecCCcccCcceECCCCCEE
Confidence 1 1235679999999999877653 1 244555553 322 2222223356889999999877
Q ss_pred EEec-CCCcEEEEEccC-CcEE--EEEeecCCCceEEEEEec-CCCc
Q 024868 170 ATTS-TDGSARIWKTED-GVAW--TFLTRNSDEKIELCRFSK-DGTK 211 (261)
Q Consensus 170 ~~~~-~d~~i~iwd~~~-~~~~--~~~~~~~~~~v~~~~~~p-~~~~ 211 (261)
+.+. ..+.|+.|++.. ++.. +.+. .....-.+++.+ +|+.
T Consensus 236 Yvadt~~~~I~~~~~~~~g~l~~~~~~~--~~g~PDGi~vD~e~G~l 280 (355)
T 3sre_A 236 YIAELLAHKIHVYEKHANWTLTPLRVLS--FDTLVDNISVDPVTGDL 280 (355)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSEEEEEEECTTTCCE
T ss_pred EEEeCCCCeEEEEEECCCCcEecCEEEe--CCCCCceEEEeCCCCcE
Confidence 6654 568899999863 3322 2332 234577889998 5885
No 290
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.28 E-value=0.0012 Score=57.17 Aligned_cols=212 Identities=12% Similarity=-0.013 Sum_probs=114.4
Q ss_pred EEEEEcCCCCceecCCeEEe-eecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeE
Q 024868 38 EIFSFDPKTTSVYTSPLVTY-VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK 116 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~ 116 (261)
-++.||..+..+..-..... ...-....|.++...+++...+. +.+| +.+||..+....................|.
T Consensus 184 Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwig-t~~G-l~~~d~~~~~~~~~~~~~~~~~~l~~~~i~ 261 (781)
T 3v9f_A 184 GLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIG-TSKG-LALFNANTETFTNFHNNPGNIHGALSSYIF 261 (781)
T ss_dssp EEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEE-ETTE-EEEEETTTTEEEC-----------CCCCEE
T ss_pred CeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEE-eCCc-HheECCCCCcEEEEEcCCCccccccCceEE
Confidence 47778877654311000000 00011356889988888875554 4454 888987655421110000000011245788
Q ss_pred EEEEeeCCcEEEEeccCCeEEEEEccCceEEeecc--------------ccCCceeEEEEcCCCCEEEEecCCCcEEEEE
Q 024868 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP--------------KAHKSVLDMDFSLDSEFLATTSTDGSARIWK 182 (261)
Q Consensus 117 ~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd 182 (261)
++...++|.+.+ |+..+-|.++|..+........ -....|.++...++|.+ -.|+.++-|..++
T Consensus 262 ~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~l-Wigt~~~Gl~~~~ 339 (781)
T 3v9f_A 262 SIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNI-WIGTWGGGINFIS 339 (781)
T ss_dssp EEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCE-EEEEBSSCEEEEC
T ss_pred EEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCE-EEEecCCeEEEeC
Confidence 998888886544 4453558888876654321111 11236889988888874 4455567788898
Q ss_pred ccCCcEEEEEe--------ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee---eccCcCeeEEE
Q 024868 183 TEDGVAWTFLT--------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---RLLRKPASVLS 251 (261)
Q Consensus 183 ~~~~~~~~~~~--------~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~v~~~~ 251 (261)
..++....... .-....|.++...++|.. ..+..++-|..||..+++..... ......|.++.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l------Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 413 (781)
T 3v9f_A 340 NAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKL------WIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSL 413 (781)
T ss_dssp SSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCE------EEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEE
T ss_pred CCCCcceeeccCccccccCCCCCcceEEEEEcCCCCE------EEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEE
Confidence 77654322211 001235888988888874 44444445888998764432111 12235678888
Q ss_pred EeeCCCEE
Q 024868 252 ISLDGKYL 259 (261)
Q Consensus 252 ~s~dg~~l 259 (261)
..++|++.
T Consensus 414 ~d~~g~lW 421 (781)
T 3v9f_A 414 KDSEGNLW 421 (781)
T ss_dssp ECTTSCEE
T ss_pred ECCCCCEE
Confidence 77777654
No 291
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.27 E-value=0.00098 Score=57.61 Aligned_cols=186 Identities=11% Similarity=0.029 Sum_probs=110.4
Q ss_pred CCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeee--CCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEE
Q 024868 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKK--MPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH 140 (261)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 140 (261)
...|.++...++|. |..|+.++-|..++.............. ....-....|.++...++|++. +|+.++-|..|+
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~ 389 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFE 389 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEE
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEE
Confidence 45689999988887 4455655558888876543211100000 0011123568888888877644 455555688898
Q ss_pred ccCceEEeec---cccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee--cCCCceEEEEEecCCCcceEE
Q 024868 141 WPSLRIILDE---PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR--NSDEKIELCRFSKDGTKPFLF 215 (261)
Q Consensus 141 ~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~~~~ 215 (261)
..++...... ......|.++...++|++.+ ++.++.+..+|.++++.. .+.. .....|.++...++|+.
T Consensus 390 ~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~l---- 463 (781)
T 3v9f_A 390 NGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKKI---- 463 (781)
T ss_dssp TTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSEE----
T ss_pred CCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCCE----
Confidence 7654432111 11224688998888887555 555667889998776543 2321 12235888888888874
Q ss_pred EEEeeCCCcEEEEEECCCCeEEeeeecc-----CcCeeEEEEeeCCCEE
Q 024868 216 CTVQRGDKALLAVYDISTWNKIGHKRLL-----RKPASVLSISLDGKYL 259 (261)
Q Consensus 216 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~-----~~~v~~~~~s~dg~~l 259 (261)
..+.. +-|..||..+++........ ...+.++...++|++.
T Consensus 464 --wigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW 509 (781)
T 3v9f_A 464 --WIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFW 509 (781)
T ss_dssp --EEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEE
T ss_pred --EEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEE
Confidence 22333 35889998876543222111 3567888888887754
No 292
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.27 E-value=0.00075 Score=52.29 Aligned_cols=195 Identities=13% Similarity=0.113 Sum_probs=107.9
Q ss_pred ecCCCCCceEEEECCCCCeEEEE------------ecCCcEEEEEEeCCccccceeeeeCC-CCCCCCCeEEEEEee--C
Q 024868 59 FDESEGDPMTIAVNPSGDDFVCS------------TTNGGCKLFEVYGGATDINLLAKKMP-PLQDAGPQKCLSFSV--D 123 (261)
Q Consensus 59 ~~~~~~~v~~~~~~~~~~~l~~~------------~~dg~i~i~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~--~ 123 (261)
+++-......+...|+|..++++ ..+|.|.++|.++.......+...-. .-...-....+.+.+ +
T Consensus 45 i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~d 124 (355)
T 3sre_A 45 VKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD 124 (355)
T ss_dssp CTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTT
T ss_pred eCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCC
Confidence 44323456678888887655554 26899999998743221111111100 111123567788877 4
Q ss_pred Cc-EEEEec-c--CCeEEEEEccCce--E--Eeecccc-CCceeEEEEcCCCCEEEEecC---C------------CcEE
Q 024868 124 GS-RFAAGG-V--DGHLRIMHWPSLR--I--ILDEPKA-HKSVLDMDFSLDSEFLATTST---D------------GSAR 179 (261)
Q Consensus 124 ~~-~l~~~~-~--d~~i~~~d~~~~~--~--~~~~~~~-~~~v~~~~~s~~~~~l~~~~~---d------------~~i~ 179 (261)
++ +|+++. . +.++.+|++.... . +...... -.....+.+.++|++.++... | ..-.
T Consensus 125 g~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~ 204 (355)
T 3sre_A 125 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSF 204 (355)
T ss_dssp CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEE
T ss_pred CcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccE
Confidence 54 344442 2 4678888776432 1 1112111 125789999999998777541 1 1233
Q ss_pred EEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC-CeEE--eeeeccCcCeeEEEEee-C
Q 024868 180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKI--GHKRLLRKPASVLSISL-D 255 (261)
Q Consensus 180 iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~--~~~~~~~~~v~~~~~s~-d 255 (261)
+|.+..++.. .+..... ..+.++|+||++.+| ++-+..+.|+.||+.. ++.. ..+ ...+..-.+++.+ +
T Consensus 205 vyr~d~~~~~-~~~~~l~-~pNGia~spDg~~lY----vadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~ 277 (355)
T 3sre_A 205 VTYYSPNDVR-VVAEGFD-FANGINISPDGKYVY----IAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVT 277 (355)
T ss_dssp EEEECTTCCE-EEEEEES-SEEEEEECTTSSEEE----EEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTT
T ss_pred EEEEECCeEE-EeecCCc-ccCcceECCCCCEEE----EEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCC
Confidence 4444334433 2322222 378999999999853 4445567899999863 3321 222 2245566788888 5
Q ss_pred CCEEe
Q 024868 256 GKYLA 260 (261)
Q Consensus 256 g~~la 260 (261)
|++.+
T Consensus 278 G~lwv 282 (355)
T 3sre_A 278 GDLWV 282 (355)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 87643
No 293
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.26 E-value=0.00072 Score=51.99 Aligned_cols=192 Identities=13% Similarity=0.101 Sum_probs=106.5
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG 85 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 85 (261)
.++.+.+.++ ..+++++. ++ .++.-......+ ......+...+..+.+.+++..++++ .+|
T Consensus 123 ~~~~i~~~~~---~~~~~~~~-~g--------~v~~S~DgG~tW------~~~~~~~~~~~~~~~~~~~~~~~~~g-~~G 183 (327)
T 2xbg_A 123 SPRLIKALGN---GSAEMITN-VG--------AIYRTKDSGKNW------QALVQEAIGVMRNLNRSPSGEYVAVS-SRG 183 (327)
T ss_dssp CEEEEEEEET---TEEEEEET-TC--------CEEEESSTTSSE------EEEECSCCCCEEEEEECTTSCEEEEE-TTS
T ss_pred CeEEEEEECC---CCEEEEeC-Cc--------cEEEEcCCCCCC------EEeecCCCcceEEEEEcCCCcEEEEE-CCC
Confidence 3566666543 34555553 33 344433333333 22233445678899999998877665 455
Q ss_pred cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccc----cCCceeEEE
Q 024868 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK----AHKSVLDMD 161 (261)
Q Consensus 86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~----~~~~v~~~~ 161 (261)
.++.-+-..+.. ..... ......+..+.++++++.++.+ .+|.+++.+...++.-..... ....+..+.
T Consensus 184 ~~~~S~d~gG~t-W~~~~-----~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~ 256 (327)
T 2xbg_A 184 SFYSTWEPGQTA-WEPHN-----RTTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLA 256 (327)
T ss_dssp SEEEEECTTCSS-CEEEE-----CCSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEE
T ss_pred cEEEEeCCCCCc-eeECC-----CCCCCccceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEEE
Confidence 444332111221 11111 1123567889999988776555 678777764222333222211 123588999
Q ss_pred EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeec--CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEEC
Q 024868 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN--SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231 (261)
Q Consensus 162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~ 231 (261)
+.++++.++.+. ++.+ .+..+.|+.-..+... ....+.++.|.++++. +..+.+|.|.-++-
T Consensus 257 ~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~------~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 257 YRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQG------FILGQKGILLRYVT 320 (327)
T ss_dssp ESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEE------EEECSTTEEEEECC
T ss_pred ecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCce------EEEcCCceEEEEcC
Confidence 998887777665 5666 4455555544434321 1234788888866653 66677888776653
No 294
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.25 E-value=1.6e-05 Score=67.64 Aligned_cols=162 Identities=6% Similarity=-0.096 Sum_probs=94.9
Q ss_pred CCceEEEECCCCCeEEEEe-cCCcEEEEEEeCCccccceeeeeCCCC-CCCCCeEEEEEeeCC-cEEEEeccCCeEEEEE
Q 024868 64 GDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPL-QDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMH 140 (261)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d 140 (261)
..+..++|.+.+..|+.+. ..+.|+.+++.+...... ....+ ........+++.+.+ +++++-...+.|.+++
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~----~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d 481 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS----YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 481 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC----CCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEB
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc----eEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEe
Confidence 4567899998777776654 357888888875210000 01111 112234568888654 4444444567899999
Q ss_pred ccCceEEeeccccCCceeEEEEcCCCCEEEEecC--CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEE
Q 024868 141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218 (261)
Q Consensus 141 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~ 218 (261)
+..................++++|.+.+|+.+.. .+.|..+++.... ...+....-...+.++|+|++..+| +
T Consensus 482 ~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~PnGlavd~~~~~LY----~ 556 (699)
T 1n7d_A 482 TKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLY----W 556 (699)
T ss_dssp SSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCCCEEECTTTCCEE----E
T ss_pred cCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCccEEEEeccCCEEE----E
Confidence 7654433222222345678999997665555443 2678887775332 2222211222467899999887754 4
Q ss_pred eeCCCcEEEEEECCCC
Q 024868 219 QRGDKALLAVYDISTW 234 (261)
Q Consensus 219 ~~~~d~~i~~~d~~~~ 234 (261)
+-...+.|..+|+...
T Consensus 557 aD~~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 557 VDSKLHSISSIDVNGG 572 (699)
T ss_dssp EETTTTEEEEECSSSS
T ss_pred EecCCCeEEEEccCCC
Confidence 4456678999998643
No 295
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.21 E-value=0.00028 Score=54.87 Aligned_cols=227 Identities=11% Similarity=0.071 Sum_probs=111.0
Q ss_pred eEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEe-eecCCCCCceEEEECCC---CCeEEEEec
Q 024868 8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTY-VFDESEGDPMTIAVNPS---GDDFVCSTT 83 (261)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~---~~~l~~~~~ 83 (261)
..++|.|+ ..++++ ...+ .|+.++ . +.. ...... ...........++++|+ +..|.++..
T Consensus 34 ~~ia~~pd---G~l~V~-e~~g--------~I~~i~-~-g~~--~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~ 97 (352)
T 2ism_A 34 WALAFLPD---GGMLIA-ERPG--------RIRLFR-E-GRL--STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRT 97 (352)
T ss_dssp EEEEECTT---SCEEEE-ETTT--------EEEEEE-T-TEE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred eEEEEcCC---CeEEEE-eCCC--------eEEEEE-C-CCc--cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEe
Confidence 46777775 334444 3345 788777 2 221 011110 11122456889999998 555554433
Q ss_pred -C-----CcEEEEEEeCCccc--cceeeeeCCC-CCCCCCeEEEEEeeCCcEEEEeccC-------------CeEEEEEc
Q 024868 84 -N-----GGCKLFEVYGGATD--INLLAKKMPP-LQDAGPQKCLSFSVDGSRFAAGGVD-------------GHLRIMHW 141 (261)
Q Consensus 84 -d-----g~i~i~~~~~~~~~--~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d-------------~~i~~~d~ 141 (261)
. +.|..++....... ..++.. ... .........++|.|||.++++.+.. +.|.-++.
T Consensus 98 ~~~~~~~~~v~r~~~~~~~~~~~~~l~~~-~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~ 176 (352)
T 2ism_A 98 VAEGGLRNQVVRLRHLGERGVLDRVVLDG-IPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTP 176 (352)
T ss_dssp ECTTSSEEEEEEEEECSSCEEEEEEEEEE-ECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECT
T ss_pred cCCCCCccEEEEEEeCCCCcCceEEEEEe-CCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcC
Confidence 2 56778887643210 111111 110 0111223679999999766664321 45555554
Q ss_pred cCceE-------------EeeccccCCceeEEEEcC-CCCEEEEecCCCcE------EEEEccCCc--------------
Q 024868 142 PSLRI-------------ILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSA------RIWKTEDGV-------------- 187 (261)
Q Consensus 142 ~~~~~-------------~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i------~iwd~~~~~-------------- 187 (261)
. ++. ...+.........++|+| +++++++-...+.+ .|.-+..+.
T Consensus 177 d-G~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~ 255 (352)
T 2ism_A 177 E-GEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDP 255 (352)
T ss_dssp T-SSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCT
T ss_pred C-CCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCC
Confidence 3 210 000111123357789999 66655553322221 122222221
Q ss_pred ----EEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe----E--EeeeeccCcCeeEEEEeeCCC
Q 024868 188 ----AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN----K--IGHKRLLRKPASVLSISLDGK 257 (261)
Q Consensus 188 ----~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~----~--~~~~~~~~~~v~~~~~s~dg~ 257 (261)
++..+. ++. ....++| .+|.. .++.-..+.|...++.... . ...+......+..+++.|||.
T Consensus 256 ~~~~p~~~~~-~~~-ap~G~~~-~~G~l-----~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 327 (352)
T 2ism_A 256 RYRDPLYFWP-QGF-PPGNLAF-FRGDL-----YVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGA 327 (352)
T ss_dssp TSCCCSEECT-TCC-CEEEEEE-ETTEE-----EEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSC
T ss_pred CCcCCeEecC-CCC-CCcceEE-ECCEE-----EEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCc
Confidence 122221 112 3567777 45654 2444555678877775332 1 112212235788999999997
Q ss_pred EEe
Q 024868 258 YLA 260 (261)
Q Consensus 258 ~la 260 (261)
..+
T Consensus 328 lyv 330 (352)
T 2ism_A 328 LYV 330 (352)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.19 E-value=0.001 Score=50.71 Aligned_cols=209 Identities=10% Similarity=0.031 Sum_probs=118.5
Q ss_pred EEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecC----CC--CCceEEEE---CCCCCeEE
Q 024868 9 CGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE----SE--GDPMTIAV---NPSGDDFV 79 (261)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~--~~v~~~~~---~~~~~~l~ 79 (261)
+++|.+.. ..+.++.-..+ .|..|++..+... ...+.+ .. ..+..+.| .|++++++
T Consensus 17 ~~~wd~~~--g~~~vs~l~~g--------~V~~~~~~~~~~~-----~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~v 81 (334)
T 2p9w_A 17 DTIYDRTR--QVFYQSNLYKG--------RIEVYNPKTQSHF-----NVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFA 81 (334)
T ss_dssp CEEEETTT--TEEEEEETTTT--------EEEEECTTTCCEE-----EECCTTTCCSSCCSEEEEEEEESSSSSCCEEEE
T ss_pred CccCcCCC--CEEEEEeccCC--------EEEEEcCCCCeEE-----EEecCCccccCCCcceeeEEEEeccCCCCcEEE
Confidence 56787642 44444444667 8999999755420 112222 11 13579999 68877766
Q ss_pred EEec-------------CCcEEEEEEe---CCccccceee-eeCCC----CC-CCCCeEEEEEeeCCcEEEEeccC-CeE
Q 024868 80 CSTT-------------NGGCKLFEVY---GGATDINLLA-KKMPP----LQ-DAGPQKCLSFSVDGSRFAAGGVD-GHL 136 (261)
Q Consensus 80 ~~~~-------------dg~i~i~~~~---~~~~~~~~~~-~~~~~----~~-~~~~v~~~~~s~~~~~l~~~~~d-~~i 136 (261)
+... +..|..||+. +++.....-. ..... .. ......+++..++|+..++++.. +.|
T Consensus 82 v~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I 161 (334)
T 2p9w_A 82 VMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAI 161 (334)
T ss_dssp EEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEE
T ss_pred EEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeE
Confidence 5432 5678899998 5543221110 00000 00 11347899999999998888777 777
Q ss_pred EEEEccCceEE-eeccc--cC--CceeEEEEcCCCCEEEEecCCCcEEEEEccCCcE--EEEEe-ec--CCCceEEE-EE
Q 024868 137 RIMHWPSLRII-LDEPK--AH--KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA--WTFLT-RN--SDEKIELC-RF 205 (261)
Q Consensus 137 ~~~d~~~~~~~-~~~~~--~~--~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~-~~--~~~~v~~~-~~ 205 (261)
...+....... ..... .. .....|+++|+|+.|++....+.+..+|+.+... +..-. +. .......+ .-
T Consensus 162 ~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~ 241 (334)
T 2p9w_A 162 ARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTV 241 (334)
T ss_dssp EEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEE
T ss_pred EEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCccccccc
Confidence 77775432221 11111 11 1367999999999888876699999999884322 11110 11 11123343 33
Q ss_pred ecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868 206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (261)
Q Consensus 206 ~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~ 236 (261)
-.+|+.+ +++....+.+.+.+...++.
T Consensus 242 ~~~G~vl----lV~~~~~~~~~l~S~DgW~s 268 (334)
T 2p9w_A 242 PVGNESV----LVGARAPYAISFRSWDNWKS 268 (334)
T ss_dssp EETTEEE----EEEEETTEEEEEECSSTTSE
T ss_pred ccCCEEE----EEEcCCCCEEEEECCCCcce
Confidence 3466652 34444566777777665554
No 297
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.19 E-value=0.002 Score=54.15 Aligned_cols=201 Identities=6% Similarity=-0.097 Sum_probs=121.7
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cC
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TN 84 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d 84 (261)
.+..++|.+. ...+.++-...+ .|+.++.++... ...+......+..+++.+.+..|+.+. ..
T Consensus 38 ~~~~l~~d~~--~~~lywtD~~~~--------~I~r~~~~g~~~------~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~ 101 (628)
T 4a0p_A 38 EASALDFDVT--DNRIYWTDISLK--------TISRAFMNGSAL------EHVVEFGLDYPEGMAVDWLGKNLYWADTGT 101 (628)
T ss_dssp CEEEEEEETT--TTEEEEEETTTT--------EEEEEETTSCSC------EEEECSSCSCCCEEEEETTTTEEEEEETTT
T ss_pred ceEEEEEECC--CCEEEEEECCCC--------eEEEEECCCCCc------EEEEeCCCCCcceEEEEeCCCEEEEEECCC
Confidence 4556777764 345555555556 788888766442 222332234577899987666665544 45
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec--cCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 162 (261)
+.|.+.+++.... ..+.. ........++++|....|+... ..+.|...++...... .+...-.....+++
T Consensus 102 ~~I~v~~~dG~~~-~~l~~------~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~-~l~~~~~~P~Glal 173 (628)
T 4a0p_A 102 NRIEVSKLDGQHR-QVLVW------KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TLVPNVGRANGLTI 173 (628)
T ss_dssp TEEEEEETTSTTC-EEEEC------SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECSCSSEEEEEE
T ss_pred CEEEEEecCCCcE-EEEEe------CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-EEECCCCCcceEEE
Confidence 7788888865432 11110 1234568999999555555543 2567888877543332 22233346789999
Q ss_pred cCCCCEEEEe-cCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEe
Q 024868 163 SLDSEFLATT-STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG 238 (261)
Q Consensus 163 s~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~ 238 (261)
+++++.|+.+ ...+.|..+|+..... ..+..... ...++++.. + .+ ..+-...+.|...|..+++...
T Consensus 174 D~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~-~P~glav~~-~-~l----y~tD~~~~~I~~~dk~tg~~~~ 242 (628)
T 4a0p_A 174 DYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLP-HPFGLTQYQ-D-YI----YWTDWSRRSIERANKTSGQNRT 242 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCS-CEEEEEEET-T-EE----EEEETTTTEEEEEETTTCCSCE
T ss_pred ccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCC-CceEEEEEC-C-EE----EEecCCCCEEEEEECCCCCceE
Confidence 9977666655 4567899999875443 33443333 366788765 3 32 2555667889999987776443
No 298
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.13 E-value=0.0016 Score=50.67 Aligned_cols=227 Identities=13% Similarity=0.038 Sum_probs=115.6
Q ss_pred eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEe-eecCCCCCceEEEECCC---CCeEEEEe
Q 024868 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTY-VFDESEGDPMTIAVNPS---GDDFVCST 82 (261)
Q Consensus 7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~---~~~l~~~~ 82 (261)
...++|.|+ ..++++ ...+ +|+.++.+... ..... ...........++++|+ +..|.++.
T Consensus 31 P~~ia~~pd---G~l~V~-e~~g--------~I~~~d~~G~~----~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~ 94 (354)
T 3a9g_A 31 PWSIAPLGG---GRYLVT-ERPG--------RLVLISPSGKK----LVASFDVANVGEAGLLGLALHPEFPKKSWVYLYA 94 (354)
T ss_dssp EEEEEEEET---TEEEEE-ETTT--------EEEEECSSCEE----EEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred CeEEEEcCC---CeEEEE-eCCC--------EEEEEeCCCce----EeeccceeecCCCceeeEEeCCCCCcCCEEEEEE
Confidence 456788885 344444 3446 88888754321 11110 11222356889999997 44554443
Q ss_pred c----C----CcEEEEEEeCCc--c--ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-------------CCeEE
Q 024868 83 T----N----GGCKLFEVYGGA--T--DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-------------DGHLR 137 (261)
Q Consensus 83 ~----d----g~i~i~~~~~~~--~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------------d~~i~ 137 (261)
. + ..|..|+..... . ...++.. ... ........++|.|||.++++.+. .|.|.
T Consensus 95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~-~~~-~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ 172 (354)
T 3a9g_A 95 SYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDG-IPG-AYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKIL 172 (354)
T ss_dssp EEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEE-EEC-CSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEE
T ss_pred eccCCCCCcceEEEEEEECCCCcCcCccEEEEEc-CCC-CCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEE
Confidence 3 2 567777776541 1 0111111 111 11123467999999987776432 14455
Q ss_pred EEEccCceE--------EeeccccCCceeEEEEcC-CCCEEEEecCCC---cEEEEEccCCc------------------
Q 024868 138 IMHWPSLRI--------ILDEPKAHKSVLDMDFSL-DSEFLATTSTDG---SARIWKTEDGV------------------ 187 (261)
Q Consensus 138 ~~d~~~~~~--------~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~---~i~iwd~~~~~------------------ 187 (261)
-++.. ++. ...+.........++|+| +|+++++-...+ .|.+. ..+.
T Consensus 173 ri~~d-G~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~ 249 (354)
T 3a9g_A 173 RVDEE-GRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVD 249 (354)
T ss_dssp EECTT-SCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCC
T ss_pred EEcCC-CCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcC
Confidence 55543 220 001111223457899999 676555533222 23332 2221
Q ss_pred EEEEEeecCCCceEEEEEe-------cCCCcceEEEEEeeCCCcEEEEEECCCC-eEE--eeee-ccCcCeeEEEEeeCC
Q 024868 188 AWTFLTRNSDEKIELCRFS-------KDGTKPFLFCTVQRGDKALLAVYDISTW-NKI--GHKR-LLRKPASVLSISLDG 256 (261)
Q Consensus 188 ~~~~~~~~~~~~v~~~~~~-------p~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~~--~~~~-~~~~~v~~~~~s~dg 256 (261)
++..+. +....+..++|. .+|++ +++.-..+.|...++... +.. ..+. .....+..+++.|||
T Consensus 250 p~~~~~-~~~~ap~G~~~y~g~~fp~~~G~l-----~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG 323 (354)
T 3a9g_A 250 PVIDTG-SETWAPSGASFVHGDMFPGLRGWL-----LIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDG 323 (354)
T ss_dssp CSEECT-TCCCCEEEEEECCSSSCGGGTTEE-----EEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTS
T ss_pred CEeecC-CCCcCCcceEEECCCCCcccCCcE-----EEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCC
Confidence 222221 112236778884 45654 344555678888888753 222 1221 123568899999999
Q ss_pred CEEe
Q 024868 257 KYLA 260 (261)
Q Consensus 257 ~~la 260 (261)
...+
T Consensus 324 ~lyv 327 (354)
T 3a9g_A 324 GILI 327 (354)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 7654
No 299
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.12 E-value=0.0011 Score=55.55 Aligned_cols=203 Identities=7% Similarity=-0.070 Sum_probs=111.4
Q ss_pred eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cC
Q 024868 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TN 84 (261)
Q Consensus 6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d 84 (261)
.+..++|.+.. ..+.++--..+ +|+.++.++... ....+...-..+..+++.+.+..|+.+. ..
T Consensus 41 ~~~~ld~~~~~--~~ly~sD~~~~--------~I~r~~~~g~~~-----~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~ 105 (619)
T 3s94_A 41 DAAAVDFVFSH--GLIYWSDVSEE--------AIKRTEFNKTES-----VQNVVVSGLLSPDGLACDWLGEKLYWTDSET 105 (619)
T ss_dssp CEEEEEEETTT--TEEEEEETTTT--------EEEEEEC----------CEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred ceEEEEEEeCC--CEEEEEECCCC--------eEEEEEccCCCc-----eEEEEeCCCCCcCeEEEEecCCEEEEEeCCC
Confidence 34566776642 44444443444 677777655421 0122333335688999998666665554 46
Q ss_pred CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec--cCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 162 (261)
+.|.+.++++.... .+.. ........++++|.+..|+.+. ..+.|...++............-.....+++
T Consensus 106 ~~I~v~~~dG~~~~-~l~~------~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glal 178 (619)
T 3s94_A 106 NRIEVSNLDGSLRK-VLFW------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTL 178 (619)
T ss_dssp TEEEEEETTSCSCE-EEEC------SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEE
T ss_pred CEEEEEECCCCCEE-EEEe------CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEE
Confidence 78999988765421 1111 1223467899999755555554 2456777776533222222222345789999
Q ss_pred cCCCCEEEEe-cCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEE
Q 024868 163 SLDSEFLATT-STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI 237 (261)
Q Consensus 163 s~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~ 237 (261)
++++..|+.+ ...+.|..+|+.............. ...++++..+ .+ ..+-...+.|...|..+++..
T Consensus 179 d~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~-~P~gi~~~~~--~l----y~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 179 DYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFED--IL----YWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp ETTTTEEEEEETTTCCEEEESSSCCEEC----------CCCEEESSS--EE----EEECTTTCSEEEEESSSCCCC
T ss_pred EccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCC-CceEEEEeCC--EE----EEecCCCCEEEEEECCCCccc
Confidence 9976666554 4567888888865433222221222 2456666554 32 245556678999998777644
No 300
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.07 E-value=0.0027 Score=53.23 Aligned_cols=183 Identities=8% Similarity=-0.051 Sum_probs=104.5
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec-CCcEEEEEEeCCccccceeeeeCCCCCCCCCeE
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK 116 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~ 116 (261)
.|...+.+.... . ...+...-..+..++|++.+..|+.+.. .+.|+.+++.+........ ........
T Consensus 19 ~I~~i~~~~~~~----~-~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~------~~~~~~P~ 87 (619)
T 3s94_A 19 DLRLVDATNGKE----N-ATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV------VSGLLSPD 87 (619)
T ss_dssp BEEEECCC--------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEE------CSSCSCEE
T ss_pred cEEEEeCCCCcc----e-EEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEE------eCCCCCcC
Confidence 566777765321 0 1112223345789999997776665544 5778888876542111111 11224678
Q ss_pred EEEEeeCCcEEEE-eccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC--CCcEEEEEccCCcEEEEEe
Q 024868 117 CLSFSVDGSRFAA-GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTFLT 193 (261)
Q Consensus 117 ~~~~s~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~ 193 (261)
.+++++.+..|+. -...+.|.+.++............-.....+++.|.+.+|+.+.. .+.|...++..... ..+.
T Consensus 88 GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~-~~l~ 166 (619)
T 3s94_A 88 GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FIII 166 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEE
T ss_pred eEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-EEEE
Confidence 9999996555544 456788999998654332222223345788999997555555442 45677777653333 3332
Q ss_pred ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868 194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (261)
Q Consensus 194 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~ 236 (261)
...-.....++++++++.+| .+-...+.|..+|+.....
T Consensus 167 ~~~~~~P~Glald~~~~~LY----~aD~~~~~I~~~~~dG~~~ 205 (619)
T 3s94_A 167 NSEIYWPNGLTLDYEEQKLY----WADAKLNFIHKSNLDGTNR 205 (619)
T ss_dssp CSSCSSEEEEEEETTTTEEE----EEETTTCCEEEESSSCCEE
T ss_pred eCCCCCCcEEEEEccCCEEE----EEeCCCCeEEEecCCCCcc
Confidence 22233588999999877754 3445567899999875443
No 301
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.06 E-value=0.002 Score=49.45 Aligned_cols=226 Identities=13% Similarity=0.096 Sum_probs=114.6
Q ss_pred CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (261)
Q Consensus 4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 83 (261)
...+.++++.++ ...+++| ..+ .++.-......+.... .........+.++.+.+ +..++ ++.
T Consensus 35 ~~~~~~v~~~~~---~~~~~~G-~~g--------~i~~s~DgG~tW~~~~---~~~~~~~~~~~~i~~~~-~~~~~-~g~ 97 (327)
T 2xbg_A 35 TATILDMSFIDR---HHGWLVG-VNA--------TLMETRDGGQTWEPRT---LVLDHSDYRFNSVSFQG-NEGWI-VGE 97 (327)
T ss_dssp SSCEEEEEESSS---SCEEEEE-TTT--------EEEEESSTTSSCEECC---CCCSCCCCEEEEEEEET-TEEEE-EEE
T ss_pred CCcEEEEEECCC---CcEEEEc-CCC--------eEEEeCCCCCCCeECC---CCCCCCCccEEEEEecC-CeEEE-EEC
Confidence 456778877542 4455554 345 5655443333331110 00112234688899976 44444 455
Q ss_pred CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeec-cccCCceeEEEE
Q 024868 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE-PKAHKSVLDMDF 162 (261)
Q Consensus 84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~ 162 (261)
.+. +|...++........ ......+.+..+.+.++++.++++ .++.|+.- .+.++.-... ......+..+.+
T Consensus 98 ~g~--i~~S~DgG~tW~~~~---~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~ 170 (327)
T 2xbg_A 98 PPI--MLHTTDGGQSWSQIP---LDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNR 170 (327)
T ss_dssp TTE--EEEESSTTSSCEECC---CCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEE
T ss_pred CCe--EEEECCCCCCceECc---cccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEE
Confidence 663 343433322111111 000112356778888888777666 45544321 1223221111 223346889999
Q ss_pred cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (261)
Q Consensus 163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~ 242 (261)
.|++++++.+...+..+-.|- .++.-..+.......+..+.+.++++. ...+.+|.+++.+...++.-.....
T Consensus 171 ~~~~~~~~~g~~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~~------~~~~~~G~~~~s~~D~G~tW~~~~~ 243 (327)
T 2xbg_A 171 SPSGEYVAVSSRGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGRL------WMIVNGGKIAFSDPDNSENWGELLS 243 (327)
T ss_dssp CTTSCEEEEETTSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTSCE------EEEETTTEEEEEETTEEEEECCCBC
T ss_pred cCCCcEEEEECCCcEEEEeCC-CCCceeECCCCCCCccceeEECCCCCE------EEEeCCceEEEecCCCCCeeEeccC
Confidence 999988877754333333332 122222222222335888999999875 3344567777765333443322221
Q ss_pred ----cCcCeeEEEEeeCCCEEe
Q 024868 243 ----LRKPASVLSISLDGKYLA 260 (261)
Q Consensus 243 ----~~~~v~~~~~s~dg~~la 260 (261)
....+..+.+.++++.++
T Consensus 244 ~~~~~~~~~~~v~~~~~~~~~~ 265 (327)
T 2xbg_A 244 PLRRNSVGFLDLAYRTPNEVWL 265 (327)
T ss_dssp TTSSCCSCEEEEEESSSSCEEE
T ss_pred CcccCCcceEEEEecCCCEEEE
Confidence 123577888888877665
No 302
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.04 E-value=0.00017 Score=58.36 Aligned_cols=158 Identities=10% Similarity=0.032 Sum_probs=92.3
Q ss_pred CceEEEECC-CCCeEEEEec-CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEE-------eeCCcEEEEeccCC-
Q 024868 65 DPMTIAVNP-SGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF-------SVDGSRFAAGGVDG- 134 (261)
Q Consensus 65 ~v~~~~~~~-~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------s~~~~~l~~~~~d~- 134 (261)
....++|.| +...|+.+.. .+.|++.|+..+... .+.. . ..........++| +++++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~-~l~~--~-~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~ 215 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS-SPLN--I-NTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDG 215 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE-EEEC--C-TTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE-EEEc--c-CccccCCCcEEEEeecccccCCCCCEEEEEeCCCC
Confidence 356899998 3555555544 355777777665431 1111 0 0012345889999 99998666665443
Q ss_pred ------eEEEEEccC-ceEE-----eeccccCCceeEEEEcCC-CCEEEEecCCCcEEEEEcc-------CCcE------
Q 024868 135 ------HLRIMHWPS-LRII-----LDEPKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTE-------DGVA------ 188 (261)
Q Consensus 135 ------~i~~~d~~~-~~~~-----~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~iwd~~-------~~~~------ 188 (261)
.+.+++... +... ..+. .......++.+|+ +.++++-..++.|..+|+. ++..
T Consensus 216 ~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 216 KGDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp TGGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred CcccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 266665333 1111 1111 1124467889995 4555566677889999997 5553
Q ss_pred -----EEE-EeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEEC
Q 024868 189 -----WTF-LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231 (261)
Q Consensus 189 -----~~~-~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~ 231 (261)
... +........+.++|+|+|+.+| ++-.....|+.+|.
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lY----vaD~~~h~I~kid~ 339 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAY----FGVINNHYFMRSDY 339 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEE----EEETTTTEEEEEEE
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEE----EEeCCCCEEEEEec
Confidence 122 2222233468999999999533 44456678888654
No 303
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.98 E-value=0.0027 Score=48.13 Aligned_cols=191 Identities=11% Similarity=0.033 Sum_probs=96.3
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC----CcEEEEEEeC
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN----GGCKLFEVYG 94 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~~~~~ 94 (261)
..+++.||.+... .++.||+.+..+...+ .++........+.+ ++..++.|+.+ ..+.+||..+
T Consensus 12 ~~l~~~GG~~~~~------~~~~~d~~~~~W~~~~----~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~ 79 (306)
T 3ii7_A 12 DYRIALFGGSQPQ------SCRYFNPKDYSWTDIR----CPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVK 79 (306)
T ss_dssp CEEEEEECCSSTT------SEEEEETTTTEEEECC----CCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTT
T ss_pred ceEEEEeCCCCCc------eEEEecCCCCCEecCC----CCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCC
Confidence 4577778765422 6889999888763221 11211112222222 56667777654 5677788766
Q ss_pred CccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC------CeEEEEEccCceEEeeccccCC-ceeEEEEcCCCC
Q 024868 95 GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------GHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSE 167 (261)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~ 167 (261)
..- .... .+... ........-+++.++.|+.+ ..+.+||..+.+-...-..... .-.+++. -+++
T Consensus 80 ~~W--~~~~----~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~ 151 (306)
T 3ii7_A 80 DSW--YSKL----GPPTP-RDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGL 151 (306)
T ss_dssp TEE--EEEE----CCSSC-CBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTE
T ss_pred CeE--EECC----CCCcc-ccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCE
Confidence 542 1111 11111 11111222377888888755 4589999887653221111111 1112222 2667
Q ss_pred EEEEecC---------CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC-----cEEEEEECCC
Q 024868 168 FLATTST---------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLAVYDIST 233 (261)
Q Consensus 168 ~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d-----~~i~~~d~~~ 233 (261)
+++.|+. -..+.+||+.+.+-...-.......-.+++. -+++. | +.++.+ ..+.+||+.+
T Consensus 152 iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i-~----v~GG~~~~~~~~~~~~yd~~~ 225 (306)
T 3ii7_A 152 IYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF-VKDKI-F----AVGGQNGLGGLDNVEYYDIKL 225 (306)
T ss_dssp EEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEE-E----EECCEETTEEBCCEEEEETTT
T ss_pred EEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE-ECCEE-E----EEeCCCCCCCCceEEEeeCCC
Confidence 7777654 3458899998775433222111111112222 24543 2 334432 4689999987
Q ss_pred Ce
Q 024868 234 WN 235 (261)
Q Consensus 234 ~~ 235 (261)
.+
T Consensus 226 ~~ 227 (306)
T 3ii7_A 226 NE 227 (306)
T ss_dssp TE
T ss_pred Cc
Confidence 54
No 304
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.92 E-value=0.0034 Score=47.38 Aligned_cols=196 Identities=13% Similarity=0.092 Sum_probs=96.2
Q ss_pred ceEEEEec-CCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-----CcEEEEEE
Q 024868 19 VNLVVLGK-SSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-----GGCKLFEV 92 (261)
Q Consensus 19 ~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~ 92 (261)
..+++.|| .+.. . ..-.++.||+.+..+...+ .++........+. .+++.++.|+.+ ..+.+||.
T Consensus 15 ~~i~~~GG~~~~~-~--~~~~~~~~d~~~~~W~~~~----~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~ 85 (301)
T 2vpj_A 15 EVLLVVGGFGSQQ-S--PIDVVEKYDPKTQEWSFLP----SITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDY 85 (301)
T ss_dssp EEEEEECCEETTT-E--ECCCEEEEETTTTEEEECC----CCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEET
T ss_pred CEEEEEeCccCCC-c--ceeEEEEEcCCCCeEEeCC----CCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEEC
Confidence 45777777 3321 1 1125788899887763221 1221111122222 256667777654 45888888
Q ss_pred eCCcc-ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC-----CeEEEEEccCceEEe--eccccCCceeEEEEcC
Q 024868 93 YGGAT-DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIMHWPSLRIIL--DEPKAHKSVLDMDFSL 164 (261)
Q Consensus 93 ~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~~~~~~--~~~~~~~~v~~~~~s~ 164 (261)
.+... ..... ..+... .........+++.++.|+.+ ..+.+||..+.+-.. ...... .-.++.. -
T Consensus 86 ~~~~~~~W~~~----~~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~-~ 158 (301)
T 2vpj_A 86 TADEDGVWYSV----APMNVR-RGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAR-EGAGLVV-A 158 (301)
T ss_dssp TCCTTCCCEEE----CCCSSC-CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCC-BSCEEEE-E
T ss_pred CCCCCCeeEEC----CCCCCC-ccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCc-ccceEEE-E
Confidence 76541 01111 111111 11111122367788887643 368899987765322 111111 1112222 2
Q ss_pred CCCEEEEecCC-----CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCC-----CcEEEEEECCCC
Q 024868 165 DSEFLATTSTD-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-----KALLAVYDISTW 234 (261)
Q Consensus 165 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~-----d~~i~~~d~~~~ 234 (261)
++++++.|+.+ ..+.+||+.+.+-...-.......-.+++ .-+++. + +.++. ...+.+||+.+.
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~i-~----v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVA-LLNDHI-Y----VVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEE-E----EECCBCSSSBCCCEEEEETTTT
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEE-EECCEE-E----EEeCCCCCcccceEEEEeCCCC
Confidence 67777777654 46889999877654332111111111222 224443 2 34443 246999999876
Q ss_pred eE
Q 024868 235 NK 236 (261)
Q Consensus 235 ~~ 236 (261)
+-
T Consensus 233 ~W 234 (301)
T 2vpj_A 233 SW 234 (301)
T ss_dssp EE
T ss_pred cE
Confidence 53
No 305
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.91 E-value=0.0011 Score=52.12 Aligned_cols=150 Identities=13% Similarity=0.136 Sum_probs=90.4
Q ss_pred CCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE-----
Q 024868 72 NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI----- 146 (261)
Q Consensus 72 ~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~----- 146 (261)
..+|..++.+ .++.||.-++.... ..+.+... ..-....+..+..||+|++||..+ +..|.+..+..+..
T Consensus 29 ~~n~t~i~~a-~~n~iR~~~i~~~~-~Yk~L~~~--~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 29 SQNGTRIVFI-QDNIIRWYNVLTDS-LYHSLNFS--RHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp ETTTTEEEEE-ETTEEEEEETTTCS-SCEEEECT--TTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCH
T ss_pred EcCCCEEEEE-ECCEEEEEECCCCC-cceEEecC--cccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccc
Confidence 4466666664 45667766766433 12222111 000123567799999999999984 55788888873221
Q ss_pred -------Eeecc-c-----cCCceeEEEEcCC---CCEEEEecCCCcEEEEEccCC--cEEEEEeecC--------CCce
Q 024868 147 -------ILDEP-K-----AHKSVLDMDFSLD---SEFLATTSTDGSARIWKTEDG--VAWTFLTRNS--------DEKI 200 (261)
Q Consensus 147 -------~~~~~-~-----~~~~v~~~~~s~~---~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~--------~~~v 200 (261)
...+. + ...+|..+.|+|- +..|++-..|+.|++||+... ++. .+.... ...+
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev 182 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDI 182 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCE
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceE
Confidence 00111 0 2357999999994 457888889999999999852 222 232111 1247
Q ss_pred EEEEEecCCCcceEEEEEeeCCCcEEEEEE
Q 024868 201 ELCRFSKDGTKPFLFCTVQRGDKALLAVYD 230 (261)
Q Consensus 201 ~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d 230 (261)
.+++|.+++-.+| +++..+.|.|+-.-
T Consensus 183 ~S~~Fg~~~lTLY---vl~~t~~GDIYAlc 209 (452)
T 3pbp_A 183 TDLEFSKDGLTLY---CLNTTEGGDIFAFY 209 (452)
T ss_dssp EEEEECTTSSCEE---EEECTTSCEEEEES
T ss_pred EEEEEcCCCcEEE---EEecCCCCCEEEEC
Confidence 8889988765533 34455667666543
No 306
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.91 E-value=0.0074 Score=50.73 Aligned_cols=198 Identities=8% Similarity=-0.042 Sum_probs=116.2
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeE
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK 116 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~ 116 (261)
.|..++.++... .....+. .-..+..++|++.+..|+.+. .++.|+.+++..... ..... .......
T Consensus 16 ~I~~i~l~~~~~----~~~~~~~-~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~------~g~~~P~ 83 (628)
T 4a0p_A 16 DIRRISLETNNN----NVAIPLT-GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVE------FGLDYPE 83 (628)
T ss_dssp EEEEEESSCTTC----EEECCCC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC------SSCSCCC
T ss_pred cEEEEECCCCCc----ceEEEcC-CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEe------CCCCCcc
Confidence 677888766442 1111122 234678999999766666544 467888888765432 11110 1123567
Q ss_pred EEEEeeCCcEEEEe-ccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEec--CCCcEEEEEccCCcEEEEEe
Q 024868 117 CLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLT 193 (261)
Q Consensus 117 ~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~ 193 (261)
.+++++.+..|+.+ ...+.|.+.++............-.....++++|....|+.+. ..+.|...++...... .+.
T Consensus 84 GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~-~l~ 162 (628)
T 4a0p_A 84 GMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TLV 162 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEE
T ss_pred eEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-EEE
Confidence 89998765555444 4567899999764432222223334578999999655555543 2567888887644433 332
Q ss_pred ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEee
Q 024868 194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL 254 (261)
Q Consensus 194 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~ 254 (261)
... .....++++++++.+| .+-...+.|..+|+..... ..+.........+++..
T Consensus 163 ~~~-~~P~GlalD~~~~~LY----~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~ 217 (628)
T 4a0p_A 163 PNV-GRANGLTIDYAKRRLY----WTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ 217 (628)
T ss_dssp CSC-SSEEEEEEETTTTEEE----EEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET
T ss_pred CCC-CCcceEEEccccCEEE----EEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC
Confidence 233 3588999999888754 4445667899999875433 22222223344566544
No 307
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.86 E-value=0.0049 Score=52.18 Aligned_cols=119 Identities=11% Similarity=0.041 Sum_probs=74.4
Q ss_pred eEEEECC-CCCeEEEEecCC-----------cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cC
Q 024868 67 MTIAVNP-SGDDFVCSTTNG-----------GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VD 133 (261)
Q Consensus 67 ~~~~~~~-~~~~l~~~~~dg-----------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d 133 (261)
...++.+ +++.++.|+.+. .+.+||..++.-... ... .........+.++.++++.+++|+ .+
T Consensus 189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~--~~~--~~~~~~~~~~~~~~~~g~lyv~GG~~~ 264 (656)
T 1k3i_A 189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR--TVT--VTKHDMFCPGISMDGNGQIVVTGGNDA 264 (656)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC--EEE--ECSCCCSSCEEEECTTSCEEEECSSST
T ss_pred eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeC--ccc--CCCCCCccccccCCCCCCEEEeCCCCC
Confidence 3566777 888888876542 477888876653111 100 011122334567788999999998 45
Q ss_pred CeEEEEEccCceEEeeccccCC-ceeEEEEcCCCCEEEEec-CC-----CcEEEEEccCCcEE
Q 024868 134 GHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTS-TD-----GSARIWKTEDGVAW 189 (261)
Q Consensus 134 ~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~-~d-----~~i~iwd~~~~~~~ 189 (261)
..+.+||..+.+-......... .-.+++..+++++++.|+ .+ ..+.+||..+++..
T Consensus 265 ~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 265 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence 6899999887653322111111 234556677999999988 34 46999999877643
No 308
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.85 E-value=0.0056 Score=47.55 Aligned_cols=56 Identities=9% Similarity=-0.029 Sum_probs=35.6
Q ss_pred eEEEEEec-------CCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee---ccCcCeeEEEEeeCCCEEe
Q 024868 200 IELCRFSK-------DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR---LLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 200 v~~~~~~p-------~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~---~~~~~v~~~~~s~dg~~la 260 (261)
+..+.|.. +|++ +++.-..+.|...++..++...... .....+..+++.|||.+.+
T Consensus 273 p~G~~~y~g~~fp~~~g~l-----~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv 338 (353)
T 2g8s_A 273 VSGMAFYNSDKFPQWQQKL-----FIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYV 338 (353)
T ss_dssp EEEEEEECCSSSGGGTTEE-----EEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEE
T ss_pred cceeEEECCccCcccCCcE-----EEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEE
Confidence 66777764 3444 3444556788888887665433222 2234788999999998654
No 309
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.76 E-value=0.0031 Score=49.01 Aligned_cols=140 Identities=10% Similarity=0.068 Sum_probs=78.3
Q ss_pred CCeEEEEEeeCCcEEEEeccCCeEEEEEccCce-EEeec---cccCCceeEEEEcCC---CCEEEEecC----C----Cc
Q 024868 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDE---PKAHKSVLDMDFSLD---SEFLATTST----D----GS 177 (261)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~---~~~~~~v~~~~~s~~---~~~l~~~~~----d----~~ 177 (261)
.....++|.|+|+++++- .++.|++++ .+++ .+..+ .........++++|+ +..|+.+.. + +.
T Consensus 29 ~~P~~ia~~pdG~l~V~e-~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTE-RPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEEEE-TTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEEEe-CCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 346789999999865554 669999987 4444 22211 112346889999997 444444332 3 56
Q ss_pred EEEEEccCC--c-----EE-EEEeecCCCceEEEEEecCCCcceEEEEEeeC------------CCcEEEEEECCCC---
Q 024868 178 ARIWKTEDG--V-----AW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG------------DKALLAVYDISTW--- 234 (261)
Q Consensus 178 i~iwd~~~~--~-----~~-~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~------------~d~~i~~~d~~~~--- 234 (261)
|..|+...+ . .+ ..+..........++|.|||.. |+ ..+. ..|.|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~L-yv---t~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~ 182 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGML-YI---TTGDAADPRLAQDLSSLAGKILRVDEEGRPPA 182 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCE-EE---ECCCTTCGGGGTCTTCCSSEEEEECTTSCCCT
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcE-EE---EECCCCCCccccCCCCCCeEEEEEcCCCCCCC
Confidence 777776643 1 11 1122111112567999999974 31 2221 1256666665421
Q ss_pred ------eEEeeeeccCcCeeEEEEee-CCCEEe
Q 024868 235 ------NKIGHKRLLRKPASVLSISL-DGKYLA 260 (261)
Q Consensus 235 ------~~~~~~~~~~~~v~~~~~s~-dg~~la 260 (261)
..+ ....+ .....++|+| +|++.+
T Consensus 183 ~npf~~~~i-~a~G~-rnp~Gla~d~~~g~l~v 213 (354)
T 3a9g_A 183 DNPFPNSPI-WSYGH-RNPQGIDWHRASGVMVA 213 (354)
T ss_dssp TSSSTTCCE-EEECC-SCCCEEEECTTTCCEEE
T ss_pred CCCCCCCcE-EEEcc-CCcceEEEeCCCCCEEE
Confidence 011 11222 2346899999 677654
No 310
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.73 E-value=0.0079 Score=45.52 Aligned_cols=193 Identities=10% Similarity=0.047 Sum_probs=96.0
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC------CcEEEEEE
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN------GGCKLFEV 92 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~~~ 92 (261)
..+++.||.+. ...-.++.||+.+..+... ..++........+.+ +++.++.|+.+ ..+.+||.
T Consensus 56 ~~lyv~GG~~~----~~~~~~~~~d~~~~~W~~~----~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~ 125 (306)
T 3ii7_A 56 NVVYILGGSQL----FPIKRMDCYNVVKDSWYSK----LGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDT 125 (306)
T ss_dssp TEEEEECCBSS----SBCCEEEEEETTTTEEEEE----ECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEET
T ss_pred CEEEEEeCCCC----CCcceEEEEeCCCCeEEEC----CCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeC
Confidence 45677777541 1122688899988776221 112222222222333 56677777654 45788887
Q ss_pred eCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc---------CCeEEEEEccCceEEeeccccCC-ceeEEEE
Q 024868 93 YGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---------DGHLRIMHWPSLRIILDEPKAHK-SVLDMDF 162 (261)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~ 162 (261)
.+..- ... ..+.....-.++ ..-+++.++.|+. -..+.+||..+.+-......... .-.++..
T Consensus 126 ~~~~W--~~~----~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 198 (306)
T 3ii7_A 126 RTESW--HTK----PSMLTQRCSHGM-VEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF 198 (306)
T ss_dssp TTTEE--EEE----CCCSSCCBSCEE-EEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred CCCce--EeC----CCCcCCcceeEE-EEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE
Confidence 76542 111 111111111112 2236777777763 34588999887653221111111 1122222
Q ss_pred cCCCCEEEEecCC-----CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCC-----CcEEEEEECC
Q 024868 163 SLDSEFLATTSTD-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-----KALLAVYDIS 232 (261)
Q Consensus 163 s~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~-----d~~i~~~d~~ 232 (261)
. ++++++.|+.+ ..+.+||+.+.+-...-.......-.+++.. +++. .+.++. -..+.+||..
T Consensus 199 ~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i-----~v~GG~~~~~~~~~~~~yd~~ 271 (306)
T 3ii7_A 199 V-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV-GSIV-----YVLAGFQGVGRLGHILEYNTE 271 (306)
T ss_dssp E-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-TTEE-----EEEECBCSSSBCCEEEEEETT
T ss_pred E-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-CCEE-----EEEeCcCCCeeeeeEEEEcCC
Confidence 2 67777777653 4688999987654332111111111122222 4443 244442 2579999998
Q ss_pred CCe
Q 024868 233 TWN 235 (261)
Q Consensus 233 ~~~ 235 (261)
+.+
T Consensus 272 ~~~ 274 (306)
T 3ii7_A 272 TDK 274 (306)
T ss_dssp TTE
T ss_pred CCe
Confidence 754
No 311
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.71 E-value=0.0086 Score=45.42 Aligned_cols=192 Identities=13% Similarity=0.083 Sum_probs=93.9
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec----C-----CcEEE
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT----N-----GGCKL 89 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d-----g~i~i 89 (261)
..+++.||..+ .. .-.++.||+.+..+...+ .++........+.+ ++..++.|+. + ..+.+
T Consensus 25 ~~i~v~GG~~~--~~--~~~~~~~d~~~~~W~~~~----~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~ 94 (308)
T 1zgk_A 25 RLIYTAGGYFR--QS--LSYLEAYNPSNGTWLRLA----DLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDC 94 (308)
T ss_dssp CCEEEECCBSS--SB--CCCEEEEETTTTEEEECC----CCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEE
T ss_pred CEEEEEeCcCC--CC--cceEEEEcCCCCeEeECC----CCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEE
Confidence 45777777522 11 125788999887763321 11111111122222 5666677665 2 45777
Q ss_pred EEEeCCccccceeeeeCCCCCC-CCCeEEEEEeeCCcEEEEeccC-----CeEEEEEccCceEEeeccccCC-ceeEEEE
Q 024868 90 FEVYGGATDINLLAKKMPPLQD-AGPQKCLSFSVDGSRFAAGGVD-----GHLRIMHWPSLRIILDEPKAHK-SVLDMDF 162 (261)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~ 162 (261)
||..+..- .. ...+.. ....... .-+++.++.|+.+ ..+.+||..+.+-......... .-.+++.
T Consensus 95 ~d~~~~~W--~~----~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 166 (308)
T 1zgk_A 95 YNPMTNQW--SP----CAPMSVPRNRIGVG--VIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV 166 (308)
T ss_dssp EETTTTEE--EE----CCCCSSCCBTCEEE--EETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred ECCCCCeE--eE----CCCCCcCccccEEE--EECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE
Confidence 88766542 11 111111 1111222 2377888887643 3588899877653221111111 1112222
Q ss_pred cCCCCEEEEecCC-----CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC-----cEEEEEECC
Q 024868 163 SLDSEFLATTSTD-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLAVYDIS 232 (261)
Q Consensus 163 s~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d-----~~i~~~d~~ 232 (261)
. ++++++.|+.+ ..+.+||+.+.+-...-.......-.+++.. +++. | +.++.+ ..+.+||+.
T Consensus 167 ~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i-y----v~GG~~~~~~~~~v~~yd~~ 239 (308)
T 1zgk_A 167 L-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCI-Y----AAGGYDGQDQLNSVERYDVE 239 (308)
T ss_dssp E-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEE-E----EECCBCSSSBCCCEEEEETT
T ss_pred E-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEE-E----EEeCCCCCCccceEEEEeCC
Confidence 2 67777777654 4588999887654322111111111122222 4443 2 344432 469999998
Q ss_pred CCe
Q 024868 233 TWN 235 (261)
Q Consensus 233 ~~~ 235 (261)
+.+
T Consensus 240 ~~~ 242 (308)
T 1zgk_A 240 TET 242 (308)
T ss_dssp TTE
T ss_pred CCc
Confidence 765
No 312
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.66 E-value=0.012 Score=45.52 Aligned_cols=231 Identities=13% Similarity=0.020 Sum_probs=114.1
Q ss_pred eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEE--eeecCCCCCceEEEECCC---CCeEEEE
Q 024868 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVT--YVFDESEGDPMTIAVNPS---GDDFVCS 81 (261)
Q Consensus 7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~---~~~l~~~ 81 (261)
...++|.|+ ..++++-...+ +|+.++..++... .... ............++++|+ +..|...
T Consensus 34 P~~ia~~pd---G~llVter~~G--------~I~~v~~~~g~~~--~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~ 100 (347)
T 3das_A 34 PWGLAPLPG---GDLLVSSRDEA--------TITRVDAKTGRKT--ELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY 100 (347)
T ss_dssp EEEEEECTT---SCEEEEETTTC--------EEEEECTTTCCEE--EEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred ceEEEEcCC---CcEEEEEecCC--------EEEEEECCCCcEe--eecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence 356677775 34555554467 8888887654421 0000 011223456889999995 3344332
Q ss_pred -e--cCCcEEEEEEeCCc----c---ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-------------CCeEEE
Q 024868 82 -T--TNGGCKLFEVYGGA----T---DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-------------DGHLRI 138 (261)
Q Consensus 82 -~--~dg~i~i~~~~~~~----~---~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------------d~~i~~ 138 (261)
+ .++.|.-|.+.... . ...++.. ... .....-..|.|.|||.++++.+. .|.|.-
T Consensus 101 yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~-~p~-~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlR 178 (347)
T 3das_A 101 FTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRG-IPK-GVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILR 178 (347)
T ss_dssp EECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEE-ECC-CSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEE
T ss_pred EecCCCCEEEEEEeCCCCcccccCCCcEEEEEc-CCC-CCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEE
Confidence 2 34456666665421 0 1111111 111 11223467999999987777542 244444
Q ss_pred EEccCceE--------EeeccccCCceeEEEEcCCCCEEEEec-CCCcEEEEEccCCc------------------EEEE
Q 024868 139 MHWPSLRI--------ILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGV------------------AWTF 191 (261)
Q Consensus 139 ~d~~~~~~--------~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~------------------~~~~ 191 (261)
.+.. ++. ...+.........++|+|+|++.++-. .|+.-.|--+..+. ++..
T Consensus 179 i~~d-G~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~ 257 (347)
T 3das_A 179 MTPD-GEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQ 257 (347)
T ss_dssp ECTT-SSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEE
T ss_pred EeCC-CCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEe
Confidence 4433 210 001111223467899999887666532 23322222222221 1222
Q ss_pred EeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE----EeeeeccCcCeeEEEEeeCCCEEe
Q 024868 192 LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK----IGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 192 ~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
+..++. ....++|. +|.. +...-..+.|....+..... ...+......+.+++..|||.+++
T Consensus 258 ~~~~~~-ap~G~~~~-~g~~-----~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv 323 (347)
T 3das_A 258 WSTDEA-SPSGIAYA-EGSV-----WMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWL 323 (347)
T ss_dssp ECTTTC-CEEEEEEE-TTEE-----EEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEE
T ss_pred cCCCCC-CCcceEEE-cCce-----eeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEE
Confidence 221111 25567776 3443 23333444566666654432 112223346789999999998654
No 313
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.64 E-value=0.0061 Score=46.23 Aligned_cols=158 Identities=11% Similarity=0.044 Sum_probs=87.1
Q ss_pred CCCCCeEEEEec--CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC--------------Ce
Q 024868 72 NPSGDDFVCSTT--NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--------------GH 135 (261)
Q Consensus 72 ~~~~~~l~~~~~--dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------------~~ 135 (261)
++++.+|..... ++.|+..+.+.... ..+.. -.+--+++++.+|+.+... ..
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~~--~~l~~----------~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~ 89 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSNI--HKLSN----------DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNS 89 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCSC--EEEEE----------EEEEEEEECSSEEEEEEECC------CCSSCCSEE
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCCC--EEccC----------CceeeEEEcCCEEEEEECCCCcccccceeccCCCe
Confidence 346777776643 34455555443321 11111 1223468899998887643 35
Q ss_pred EEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEec--CC--CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS--TD--GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (261)
Q Consensus 136 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d--~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 211 (261)
|+..++...+... +.. . ....|++++++|+-.. .+ ..|+..++...+ ...+..+. + ..|+|+++.
T Consensus 90 Iy~i~~dg~~~~~-l~~--~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~---~--~~~~~~g~~ 158 (302)
T 3s25_A 90 LCRIKRNGHGSTV-LDP--D--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHY---L--FTCNTSDRY 158 (302)
T ss_dssp EEEEETTSCCCEE-EEC--S--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSC---C--CCSEEETTE
T ss_pred EEEEeCCCCcceE-eec--C--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCC---c--eEeeEECCE
Confidence 6777766554322 211 1 2236788899888765 33 455555655333 34444322 2 457889998
Q ss_pred ceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 212 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
+| .+.....+|++.++..+....... +... ..++|++++|+
T Consensus 159 iy----~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy 199 (302)
T 3s25_A 159 FY----YNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVY 199 (302)
T ss_dssp EE----EECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEE
T ss_pred EE----EEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEE
Confidence 43 333346789999987765432222 2222 34668888875
No 314
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.63 E-value=0.014 Score=46.09 Aligned_cols=116 Identities=17% Similarity=0.188 Sum_probs=75.7
Q ss_pred CceEEEECCCCCeEEEEecCCcEEEEEEeCCccccc---------eeeeeCCCCC--CCCCeEEEEEeeC---CcEEEEe
Q 024868 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN---------LLAKKMPPLQ--DAGPQKCLSFSVD---GSRFAAG 130 (261)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~---------~~~~~~~~~~--~~~~v~~~~~s~~---~~~l~~~ 130 (261)
.+..+..+|+|++||..+. ..|.|-.+..+..... ...-...... ...+|..+.|+|- +..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 6888999999999988754 4699999874321110 0000111111 2578999999994 4578888
Q ss_pred ccCCeEEEEEccCce--EE-e-------eccccCCceeEEEEcCCCCEEEE--ecCCCcEEEE
Q 024868 131 GVDGHLRIMHWPSLR--II-L-------DEPKAHKSVLDMDFSLDSEFLAT--TSTDGSARIW 181 (261)
Q Consensus 131 ~~d~~i~~~d~~~~~--~~-~-------~~~~~~~~v~~~~~s~~~~~l~~--~~~d~~i~iw 181 (261)
..|+.|++||+.... +. . ........|.+++|.+++-.|+. .+.+|.|+-.
T Consensus 146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 899999999997521 11 0 00111146889999998876766 4477876643
No 315
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.63 E-value=0.0021 Score=49.96 Aligned_cols=95 Identities=14% Similarity=0.149 Sum_probs=57.4
Q ss_pred CeEEEEEeeCCcEEEEeccCCeEEEEEccCceE--Eeecc---ccCCceeEEEEcCC---CCEEEEecC-C-----CcEE
Q 024868 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI--ILDEP---KAHKSVLDMDFSLD---SEFLATTST-D-----GSAR 179 (261)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~---~~~~~v~~~~~s~~---~~~l~~~~~-d-----~~i~ 179 (261)
....++|.|+|+++++ ..++.|++++ +++. +.... ........++++|+ +..|+.+.. . +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 4678999999986555 4669999998 3332 11111 12346889999998 555544332 2 5688
Q ss_pred EEEccCCcE-----EE-EEee--cCCCceEEEEEecCCCc
Q 024868 180 IWKTEDGVA-----WT-FLTR--NSDEKIELCRFSKDGTK 211 (261)
Q Consensus 180 iwd~~~~~~-----~~-~~~~--~~~~~v~~~~~~p~~~~ 211 (261)
.|+...++. +. .+.. ........++|.|||..
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~L 148 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGML 148 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCE
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCE
Confidence 888764421 11 1221 11112468999999964
No 316
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.61 E-value=0.012 Score=44.54 Aligned_cols=182 Identities=9% Similarity=0.083 Sum_probs=98.7
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC--------------cEEEEEEeCCccccceee
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG--------------GCKLFEVYGGATDINLLA 103 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------~i~i~~~~~~~~~~~~~~ 103 (261)
.|+..+.+.... ..... +. +--+++++++|+...... .|+..++.+... ..+.
T Consensus 38 ~ly~~~~dg~~~------~~l~~---~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~--~~l~ 104 (302)
T 3s25_A 38 RLYAMNIDGSNI------HKLSN---DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS--TVLD 104 (302)
T ss_dssp EEEEEETTSCSC------EEEEE---EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC--EEEE
T ss_pred eEEEEcCCCCCC------EEccC---Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc--eEee
Confidence 788888776553 11111 11 234578899988776532 445555544431 1111
Q ss_pred eeCCCCCCCCCeEEEEEeeCCcEEEEec--cC--CeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC-CCcE
Q 024868 104 KKMPPLQDAGPQKCLSFSVDGSRFAAGG--VD--GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSA 178 (261)
Q Consensus 104 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d--~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i 178 (261)
.. ....|++++++|+... .+ ..|+..++..... ..+..+.. ..++|+++.|+..+. ..+|
T Consensus 105 --------~~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~~~~----~~~~~~g~~iy~t~~g~~~I 169 (302)
T 3s25_A 105 --------PD--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKNHYL----FTCNTSDRYFYYNNPKNGQL 169 (302)
T ss_dssp --------CS--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EEEESSCC----CCSEEETTEEEEECTTTCCE
T ss_pred --------cC--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EEEeCCCc----eEeeEECCEEEEEeCCCceE
Confidence 11 2247889999888775 23 3455556553332 22322222 456888888886665 5778
Q ss_pred EEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCE
Q 024868 179 RIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKY 258 (261)
Q Consensus 179 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 258 (261)
...++..+.....+. . ... ..++|++.+++. ........|..-++...... .+. ...+ ..|+|+|++
T Consensus 170 y~~~l~g~~~~~l~~---~-~~~-~~~~P~g~~iy~---t~~~~~~~I~~~~ldG~~~~-~Lt--~~~~--~~~~~~g~~ 236 (302)
T 3s25_A 170 YRYDTASQSEALFYD---C-NCY-KPVVLDDTNVYY---MDVNRDNAIVHVNINNPNPV-VLT--EANI--EHYNVYGSL 236 (302)
T ss_dssp EEEETTTTEEEEEEC---S-CEE-EEEEEETTEEEE---EEGGGTTEEEEECSSSCCCE-ECS--CSCE--EEEEEETTE
T ss_pred EEEECCCCCEEEEeC---C-Ccc-ceeeecCCEEEE---EEcCCCcEEEEEECCCCCeE-EEe--CCCc--ceEEECCCE
Confidence 888877655443322 2 122 346699998432 12222246777777655432 222 1222 347777776
Q ss_pred Ee
Q 024868 259 LA 260 (261)
Q Consensus 259 la 260 (261)
|.
T Consensus 237 Iy 238 (302)
T 3s25_A 237 IF 238 (302)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 317
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.53 E-value=0.0032 Score=44.91 Aligned_cols=139 Identities=12% Similarity=-0.003 Sum_probs=74.3
Q ss_pred CceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCC--CCCCeEEEEEeeCCcEEEEeccCCeEEEEEcc
Q 024868 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ--DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (261)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 142 (261)
.+..++|+|+|.+.++ .+|.++-.+..+... .........+. .-.....+.|.|+|.+.++ .||.|+-++-.
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~--~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDN--DNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTT--CCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCc--ccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 6779999999986666 677655544432211 00000000000 0011367889999988877 56988888753
Q ss_pred CceEE-e----eccc--cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCc------EEEEEeecCCCceEEEEEecCC
Q 024868 143 SLRII-L----DEPK--AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV------AWTFLTRNSDEKIELCRFSKDG 209 (261)
Q Consensus 143 ~~~~~-~----~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~p~~ 209 (261)
+.... . .... .-..+..+.+.|+|.+.+.. |+.++-....++. ....+-...-..-+.+.|.|++
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 32110 0 0011 11368999999999977776 6764432222111 0111110111124556688888
Q ss_pred Cc
Q 024868 210 TK 211 (261)
Q Consensus 210 ~~ 211 (261)
..
T Consensus 194 ~l 195 (236)
T 1tl2_A 194 TL 195 (236)
T ss_dssp CE
T ss_pred cE
Confidence 75
No 318
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.52 E-value=0.0073 Score=46.61 Aligned_cols=142 Identities=8% Similarity=-0.018 Sum_probs=79.8
Q ss_pred CCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE--eec----cccCCceeEEEEcCC---CCEEEEe---cCCCcEEE
Q 024868 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII--LDE----PKAHKSVLDMDFSLD---SEFLATT---STDGSARI 180 (261)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~----~~~~~~v~~~~~s~~---~~~l~~~---~~d~~i~i 180 (261)
.....|+|.|||+++++-...|.|++++...++.. ... .........++++|+ +..|+.. ..++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 35688999999998777755899999986554432 111 122346889999995 3344432 23455666
Q ss_pred EEccCC----------cEEE-EEeecCCCceEEEEEecCCCcceEEEEEeeC------------CCcEEEEEECCCC---
Q 024868 181 WKTEDG----------VAWT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRG------------DKALLAVYDISTW--- 234 (261)
Q Consensus 181 wd~~~~----------~~~~-~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~------------~d~~i~~~d~~~~--- 234 (261)
|.+..+ +.+. .+..........+.|.|||.. | +..+. ..|.|.-++....
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~L-y---vt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~ 187 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKML-Y---AGTGESGDTGLSQDRKSLGGKILRMTPDGEPAP 187 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCE-E---EECBCTTCGGGTTCTTCSTTCEEEECTTSSBCT
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCE-E---EEECCCCCCccccCCCCCCCEEEEEeCCCCccC
Confidence 665541 1111 122111123567999999974 3 23221 2355555555421
Q ss_pred ------eEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868 235 ------NKIGHKRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 235 ------~~~~~~~~~~~~v~~~~~s~dg~~la 260 (261)
..+ ...++ .....++|+|+|++.+
T Consensus 188 ~nPf~~~~i-~a~G~-RNp~Gla~dp~G~L~~ 217 (347)
T 3das_A 188 GNPFPGSPV-YSYGH-RNVQGLAWDDKQRLFA 217 (347)
T ss_dssp TCSSTTCCE-EEBCC-SBCCEEEECTTCCEEE
T ss_pred CCCCCCCeE-EeeCC-CCcceEEECCCCCEEE
Confidence 111 11223 2346899999987654
No 319
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.51 E-value=0.013 Score=47.24 Aligned_cols=99 Identities=13% Similarity=0.174 Sum_probs=57.7
Q ss_pred CCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE--eeccc------cCCceeEEEEcCC---CCEEEEecC-------
Q 024868 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII--LDEPK------AHKSVLDMDFSLD---SEFLATTST------- 174 (261)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~------~~~~v~~~~~s~~---~~~l~~~~~------- 174 (261)
.....|+|.|+|+++++-...+.|++++..+++.. ..+.. .......|+|+|+ +..|+....
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 34678999999997777644457888876544332 22211 2346789999995 554544331
Q ss_pred ------CCcEEEEEccCC--c-----EEE-EEeecCCCceEEEEEecCCCc
Q 024868 175 ------DGSARIWKTEDG--V-----AWT-FLTRNSDEKIELCRFSKDGTK 211 (261)
Q Consensus 175 ------d~~i~iwd~~~~--~-----~~~-~~~~~~~~~v~~~~~~p~~~~ 211 (261)
...|.-|+...+ + .+. .+..........++|.|||..
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~L 157 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKI 157 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCE
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeE
Confidence 134555665432 1 111 122111224788999999975
No 320
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.49 E-value=0.019 Score=43.54 Aligned_cols=178 Identities=12% Similarity=0.063 Sum_probs=88.0
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-----CcEEEEEEeCCccccceeeeeCCCCCCC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-----GGCKLFEVYGGATDINLLAKKMPPLQDA 112 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~ 112 (261)
.++.||+.+..+...+ .++........+.+ +++.++.|+.+ ..+.+||..+..- .. ...+...
T Consensus 91 ~~~~~d~~~~~W~~~~----~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W--~~----~~~~p~~ 158 (308)
T 1zgk_A 91 ALDCYNPMTNQWSPCA----PMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEW--HL----VAPMLTR 158 (308)
T ss_dssp CEEEEETTTTEEEECC----CCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEE--EE----CCCCSSC
T ss_pred eEEEECCCCCeEeECC----CCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeE--eE----CCCCCcc
Confidence 5788898887763221 12211112222333 56667776643 3577788766542 11 1111111
Q ss_pred CCeEEEEEeeCCcEEEEeccC-----CeEEEEEccCceEEeeccccCC-ceeEEEEcCCCCEEEEecCC-----CcEEEE
Q 024868 113 GPQKCLSFSVDGSRFAAGGVD-----GHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTD-----GSARIW 181 (261)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d-----~~i~iw 181 (261)
..-.++. .-+++.++.|+.+ ..+..||+.+.+-......... .-.++... ++++++.|+.+ ..+.+|
T Consensus 159 r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~y 236 (308)
T 1zgk_A 159 RIGVGVA-VLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERY 236 (308)
T ss_dssp CBSCEEE-EETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEE
T ss_pred ccceEEE-EECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEE
Confidence 1111122 2267788887754 4588999877653221111111 11222222 67777777654 568999
Q ss_pred EccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCC-----CcEEEEEECCCCe
Q 024868 182 KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-----KALLAVYDISTWN 235 (261)
Q Consensus 182 d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~-----d~~i~~~d~~~~~ 235 (261)
|+.+.+-...-.......-.+++. -+++. | +.++. -..+.+||+.+.+
T Consensus 237 d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i-~----v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 237 DVETETWTFVAPMKHRRSALGITV-HQGRI-Y----VLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp ETTTTEEEECCCCSSCCBSCEEEE-ETTEE-E----EECCBCSSCBCCEEEEEETTTTE
T ss_pred eCCCCcEEECCCCCCCccceEEEE-ECCEE-E----EEcCcCCCcccceEEEEcCCCCE
Confidence 998765433211111111112222 24543 2 34442 2468899998765
No 321
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.47 E-value=0.019 Score=43.28 Aligned_cols=194 Identities=13% Similarity=0.088 Sum_probs=96.0
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCc---eecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-----CcEEEE
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTS---VYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-----GGCKLF 90 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~ 90 (261)
..+++.||.++. ...-.++.||+.+.. +... ..++........+.+ +++.++.|+.+ ..+.+|
T Consensus 63 ~~l~v~GG~~~~---~~~~~~~~~d~~~~~~~~W~~~----~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~ 133 (301)
T 2vpj_A 63 DRIYVIGGYDGR---SRLSSVECLDYTADEDGVWYSV----APMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERY 133 (301)
T ss_dssp TEEEEECCBCSS---CBCCCEEEEETTCCTTCCCEEE----CCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEE
T ss_pred CEEEEEcCCCCC---ccCceEEEEECCCCCCCeeEEC----CCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEE
Confidence 456777775531 112257888887766 4221 112222222222333 56667777654 357777
Q ss_pred EEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC-----CeEEEEEccCceEEeeccccCC-ceeEEEEcC
Q 024868 91 EVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIMHWPSLRIILDEPKAHK-SVLDMDFSL 164 (261)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~ 164 (261)
|..+..- ..... +... .........+++.++.|+.+ ..+..||+.+.+-......... .-.++.. -
T Consensus 134 d~~~~~W--~~~~~----~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~ 205 (301)
T 2vpj_A 134 DPNIDQW--SMLGD----MQTA-REGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-L 205 (301)
T ss_dssp ETTTTEE--EEEEE----CSSC-CBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-E
T ss_pred cCCCCeE--EECCC----CCCC-cccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-E
Confidence 7765542 11111 1111 11111222378888888754 4588999877653222111111 1112222 2
Q ss_pred CCCEEEEecCC-----CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC-----cEEEEEECCCC
Q 024868 165 DSEFLATTSTD-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLAVYDISTW 234 (261)
Q Consensus 165 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d-----~~i~~~d~~~~ 234 (261)
++++++.|+.+ ..+.+||+.+.+-...-.......-.++ ..-+++. .+.++.+ ..+.+||.++.
T Consensus 206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~-~~~~~~i-----~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGA-TVLRGRL-----YAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE-EEETTEE-----EEECCBCSSSBEEEEEEEETTTT
T ss_pred CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeE-EEECCEE-----EEEcCcCCCcccccEEEEcCCCC
Confidence 57777777754 4689999987765433221111111122 2235553 2444433 57899999875
Q ss_pred e
Q 024868 235 N 235 (261)
Q Consensus 235 ~ 235 (261)
+
T Consensus 280 ~ 280 (301)
T 2vpj_A 280 S 280 (301)
T ss_dssp E
T ss_pred e
Confidence 4
No 322
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.47 E-value=0.019 Score=43.30 Aligned_cols=195 Identities=14% Similarity=0.132 Sum_probs=95.4
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC-----cEEEEEEe
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG-----GCKLFEVY 93 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~~~~ 93 (261)
..+++.||.++.. ..-.++.||+.+..+...+ .++........+.+ +++.++.|+.++ .+.+||..
T Consensus 62 ~~lyv~GG~~~~~---~~~~~~~~d~~~~~W~~~~----~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~ 132 (302)
T 2xn4_A 62 GLVFAVGGFNGSL---RVRTVDSYDPVKDQWTSVA----NMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIK 132 (302)
T ss_dssp TEEEEESCBCSSS---BCCCEEEEETTTTEEEEEC----CCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETT
T ss_pred CEEEEEeCcCCCc---cccceEEECCCCCceeeCC----CCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCC
Confidence 4567777754421 1125788999887763211 12211122222223 566777776553 46666665
Q ss_pred CCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC-------CeEEEEEccCceEEeeccccCC-ceeEEEEcCC
Q 024868 94 GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-------GHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLD 165 (261)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-------~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~ 165 (261)
+..- ... ..+.....-.++ ..-+++.++.|+.+ ..+..||+.+.+-......... .-.++.. -+
T Consensus 133 ~~~W--~~~----~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~ 204 (302)
T 2xn4_A 133 SNEW--FHV----APMNTRRSSVGV-GVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LN 204 (302)
T ss_dssp TTEE--EEE----CCCSSCCBSCEE-EEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ET
T ss_pred CCeE--eec----CCCCCcccCceE-EEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-EC
Confidence 5432 111 111111111112 22367777777642 3588999877653221111111 1122222 26
Q ss_pred CCEEEEecCC-----CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC-----cEEEEEECCCCe
Q 024868 166 SEFLATTSTD-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLAVYDISTWN 235 (261)
Q Consensus 166 ~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d-----~~i~~~d~~~~~ 235 (261)
+++++.|+.+ ..+.+||+.+.+-...-.......-..++ .-+++. .+.++.+ ..+.+||..+.+
T Consensus 205 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~i-----~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 205 NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC-AVNGLL-----YVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp TEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEE-----EEECCBCSSSBCCCEEEEETTTTE
T ss_pred CEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE-EECCEE-----EEECCcCCCcccccEEEEcCCCCe
Confidence 7777787754 46889999877644322111111111222 235553 2444433 358999998765
Q ss_pred E
Q 024868 236 K 236 (261)
Q Consensus 236 ~ 236 (261)
-
T Consensus 279 W 279 (302)
T 2xn4_A 279 W 279 (302)
T ss_dssp E
T ss_pred E
Confidence 3
No 323
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.44 E-value=0.018 Score=44.64 Aligned_cols=146 Identities=8% Similarity=0.018 Sum_probs=76.1
Q ss_pred CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC---CcEEEEec-c-------
Q 024868 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGG-V------- 132 (261)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~-~------- 132 (261)
.....++|.|+|+.|+++...|.|++++.. +......................++++|+ +..|.+.. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 357899999999844455678888888743 22110000000011122346789999995 44444432 2
Q ss_pred CCeEEEEEccCc-------eEEeeccc----cCCceeEEEEcCCCCEEEEecCC-------------CcEEEEEccCC--
Q 024868 133 DGHLRIMHWPSL-------RIILDEPK----AHKSVLDMDFSLDSEFLATTSTD-------------GSARIWKTEDG-- 186 (261)
Q Consensus 133 d~~i~~~d~~~~-------~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d-------------~~i~iwd~~~~-- 186 (261)
...|..+++... +.+..... .......+.|.|||.+.++.+.. +.|.-++....
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 234666665432 11111111 11124679999999766665432 34655665421
Q ss_pred ----------cEEEEEeecCCCceEEEEEec-CCCc
Q 024868 187 ----------VAWTFLTRNSDEKIELCRFSK-DGTK 211 (261)
Q Consensus 187 ----------~~~~~~~~~~~~~v~~~~~~p-~~~~ 211 (261)
.....+..... ....++|+| +|+.
T Consensus 177 ~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l 211 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNAL 211 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEE
T ss_pred CCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCE
Confidence 01122222222 378899999 5553
No 324
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.44 E-value=0.022 Score=43.25 Aligned_cols=188 Identities=14% Similarity=0.096 Sum_probs=93.5
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec-----C--C----cE
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-----N--G----GC 87 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d--g----~i 87 (261)
+.+++.|+ . .++.||+.+..+.. ..++.............+++.++.|+. . . .+
T Consensus 5 ~~l~~~GG--~--------~~~~yd~~~~~W~~-----~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 69 (315)
T 4asc_A 5 DLIFMISE--E--------GAVAYDPAANECYC-----ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYF 69 (315)
T ss_dssp EEEEEEET--T--------EEEEEETTTTEEEE-----EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEE
T ss_pred eEEEEEcC--C--------ceEEECCCCCeEec-----CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccce
Confidence 34666776 3 79999999988732 222222233333344457777777773 1 1 25
Q ss_pred EEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC--------CeEEEEEccCceEEeeccccCCc-ee
Q 024868 88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--------GHLRIMHWPSLRIILDEPKAHKS-VL 158 (261)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~~~~~~~~-v~ 158 (261)
..||..+..- .. ...+.....-.++ ..-+++.++.|+.+ ..+.+||..+.+-.......... -.
T Consensus 70 ~~~d~~~~~W--~~----~~~~p~~r~~~~~-~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 142 (315)
T 4asc_A 70 LQFDHLDSEW--LG----MPPLPSPRCLFGL-GEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH 142 (315)
T ss_dssp EEEETTTTEE--EE----CCCBSSCEESCEE-EEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC
T ss_pred EEecCCCCeE--EE----CCCCCcchhceeE-EEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce
Confidence 5666655432 11 1111111000111 12267777777732 35889998876532211111111 12
Q ss_pred EEEEcCCCCEEEEecC-C-----CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC-----cEEE
Q 024868 159 DMDFSLDSEFLATTST-D-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLA 227 (261)
Q Consensus 159 ~~~~s~~~~~l~~~~~-d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d-----~~i~ 227 (261)
+++ .-++++++.|+. + ..+.+||..+.+-...-.......-.+++ .-+++. | +.++.+ ..+.
T Consensus 143 ~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i-y----v~GG~~~~~~~~~~~ 215 (315)
T 4asc_A 143 TVL-SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGRI-I----VAAGVTDTGLTSSAE 215 (315)
T ss_dssp EEE-EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEE-E----EEEEECSSSEEEEEE
T ss_pred eEE-EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE-EECCEE-E----EEeccCCCCccceEE
Confidence 222 246677777775 2 46899999876543321111111111222 224543 3 333322 3689
Q ss_pred EEECCCCe
Q 024868 228 VYDISTWN 235 (261)
Q Consensus 228 ~~d~~~~~ 235 (261)
+||..+.+
T Consensus 216 ~yd~~~~~ 223 (315)
T 4asc_A 216 VYSITDNK 223 (315)
T ss_dssp EEETTTTE
T ss_pred EEECCCCe
Confidence 99998764
No 325
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.39 E-value=0.025 Score=42.93 Aligned_cols=139 Identities=10% Similarity=0.042 Sum_probs=71.0
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC--------CcEEEEEEeCCccccceeeeeCCCC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN--------GGCKLFEVYGGATDINLLAKKMPPL 109 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~~~~~~~~~~~~~~~~~~~~ 109 (261)
.++.||+.+..+...+. ++........+.+ +++.++.|+.+ ..+.+||..+..- .. ...+
T Consensus 68 ~~~~~d~~~~~W~~~~~----~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W--~~----~~~~ 135 (315)
T 4asc_A 68 YFLQFDHLDSEWLGMPP----LPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKW--GE----SDPL 135 (315)
T ss_dssp EEEEEETTTTEEEECCC----BSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEE--EE----CCCC
T ss_pred ceEEecCCCCeEEECCC----CCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcE--eE----CCCC
Confidence 38899998877632211 1111111122222 56666666632 4578888776542 11 1111
Q ss_pred CCCCCeEEEEEeeCCcEEEEecc-C-----CeEEEEEccCceEEeeccccCCc-eeEEEEcCCCCEEEEecCCC-----c
Q 024868 110 QDAGPQKCLSFSVDGSRFAAGGV-D-----GHLRIMHWPSLRIILDEPKAHKS-VLDMDFSLDSEFLATTSTDG-----S 177 (261)
Q Consensus 110 ~~~~~v~~~~~s~~~~~l~~~~~-d-----~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~d~-----~ 177 (261)
... .....+...+++.++.|+. + ..+.+||..+.+-.......... -.++.. -++++++.|+.++ .
T Consensus 136 p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~ 213 (315)
T 4asc_A 136 PYV-VYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSS 213 (315)
T ss_dssp SSC-CBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEE
T ss_pred CCc-ccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccce
Confidence 111 1111222356778888875 2 46899998776532211111111 122222 2677777777654 5
Q ss_pred EEEEEccCCcEEE
Q 024868 178 ARIWKTEDGVAWT 190 (261)
Q Consensus 178 i~iwd~~~~~~~~ 190 (261)
+.+||+.+.+-..
T Consensus 214 ~~~yd~~~~~W~~ 226 (315)
T 4asc_A 214 AEVYSITDNKWAP 226 (315)
T ss_dssp EEEEETTTTEEEE
T ss_pred EEEEECCCCeEEE
Confidence 8889998775443
No 326
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.36 E-value=0.0016 Score=46.47 Aligned_cols=137 Identities=10% Similarity=-0.059 Sum_probs=76.2
Q ss_pred CCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE-----eecccc--CCceeEEEEcCCCCEEEEecCCCcEEEEEccC
Q 024868 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-----LDEPKA--HKSVLDMDFSLDSEFLATTSTDGSARIWKTED 185 (261)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~-----~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~ 185 (261)
..+..++|+|+|.+.++ .+|.++-.+..+.+.. ...... -.....+.|.|+|.+.++ .||.|+-++-.+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 36679999999987777 7887777665442210 001111 112478999999987777 458887776533
Q ss_pred CcEE------EEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE------Eeeee-ccCcCeeEEEE
Q 024868 186 GVAW------TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK------IGHKR-LLRKPASVLSI 252 (261)
Q Consensus 186 ~~~~------~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~------~~~~~-~~~~~v~~~~~ 252 (261)
.... ..+-...-..+..+.|.|+|.. .... |+.++-....+... ...+. ..-.....+.|
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~L------yav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f 189 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYL------YAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFF 189 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCE------EEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceE------EEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEE
Confidence 2111 1111111124789999999985 3333 66654433332110 01111 11123445678
Q ss_pred eeCCCEEe
Q 024868 253 SLDGKYLA 260 (261)
Q Consensus 253 s~dg~~la 260 (261)
+++|...+
T Consensus 190 ~~~G~l~~ 197 (236)
T 1tl2_A 190 SSVGTLFG 197 (236)
T ss_dssp CTTSCEEE
T ss_pred CCCCcEEE
Confidence 88887665
No 327
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.31 E-value=0.03 Score=42.15 Aligned_cols=193 Identities=13% Similarity=0.129 Sum_probs=93.9
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-----CcEEEEEEe
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-----GGCKLFEVY 93 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~~ 93 (261)
..+++.||.+.. ..-.++.||+.+..+... ..++.....-..+.+ ++..++.|+.+ ..+.+||..
T Consensus 16 ~~i~v~GG~~~~----~~~~~~~~d~~~~~W~~~----~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~ 85 (302)
T 2xn4_A 16 KLMVVVGGQAPK----AIRSVECYDFKEERWHQV----AELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPV 85 (302)
T ss_dssp EEEEEECCBSSS----BCCCEEEEETTTTEEEEE----CCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETT
T ss_pred CEEEEECCCCCC----CCCcEEEEcCcCCcEeEc----ccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCC
Confidence 457777775431 112478889888765221 112211111122222 56667777654 357778776
Q ss_pred CCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC-----eEEEEEccCceEEeeccccCC-ceeEEEEcCCCC
Q 024868 94 GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-----HLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSE 167 (261)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~ 167 (261)
+..- ... ..+.....-.++ ..-+++.++.|+.++ .+.+||..+.+-......... .-.+++. -+++
T Consensus 86 ~~~W--~~~----~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~ 157 (302)
T 2xn4_A 86 KDQW--TSV----ANMRDRRSTLGA-AVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGL 157 (302)
T ss_dssp TTEE--EEE----CCCSSCCBSCEE-EEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTE
T ss_pred CCce--eeC----CCCCccccceEE-EEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCE
Confidence 6542 111 111111111112 223677888887553 578888877653221111111 1122222 2567
Q ss_pred EEEEecCC-------CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC-----cEEEEEECCCCe
Q 024868 168 FLATTSTD-------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLAVYDISTWN 235 (261)
Q Consensus 168 ~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d-----~~i~~~d~~~~~ 235 (261)
+++.|+.+ ..+.+||+.+.+-...-.......-.+++. -+++. | +.++.+ ..+.+||..+.+
T Consensus 158 iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i-y----v~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 158 LYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLL-Y----AVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp EEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEE-E----EECCBSSSSBCCCEEEEETTTTE
T ss_pred EEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEE-E----EECCCCCCcccceEEEEeCCCCC
Confidence 77776642 358899998776443321111111112222 24443 2 444432 469999998765
No 328
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.28 E-value=0.049 Score=43.87 Aligned_cols=110 Identities=11% Similarity=0.118 Sum_probs=60.0
Q ss_pred CCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCC---CCCCCeEEEEEeeC---CcEEEEecc----
Q 024868 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL---QDAGPQKCLSFSVD---GSRFAAGGV---- 132 (261)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~---~~~l~~~~~---- 132 (261)
-.....++|.|+|+.+++-...+.|++++..++... . +......+ ........++|+|+ +..|.++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~-~-~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVK-T-VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-E-EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe-E-EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 346779999999986665433346777765433321 1 11111111 13456789999995 444444432
Q ss_pred ---------CCeEEEEEccCc-------eEEee-ccc-cCCceeEEEEcCCCCEEEEecC
Q 024868 133 ---------DGHLRIMHWPSL-------RIILD-EPK-AHKSVLDMDFSLDSEFLATTST 174 (261)
Q Consensus 133 ---------d~~i~~~d~~~~-------~~~~~-~~~-~~~~v~~~~~s~~~~~l~~~~~ 174 (261)
...|.-++.... +.+.. +.. .......+.|.|||.+.++.+.
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234555554321 11221 111 1124688999999987776543
No 329
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.19 E-value=0.033 Score=42.38 Aligned_cols=138 Identities=10% Similarity=0.030 Sum_probs=68.6
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-------CcEEEEEEeCCccccceeeeeCCCCC
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-------GGCKLFEVYGGATDINLLAKKMPPLQ 110 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~i~~~~~~~~~~~~~~~~~~~~~ 110 (261)
.++.||+.+..+...+ .++........+.+ +++.++.|+.+ ..+.+||..+..- .... .+.
T Consensus 79 ~~~~~d~~~~~W~~~~----~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W--~~~~----~~p 146 (318)
T 2woz_A 79 YFFQLDNVSSEWVGLP----PLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKW--SEVK----NLP 146 (318)
T ss_dssp EEEEEETTTTEEEECS----CBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEE--EEEC----CCS
T ss_pred cEEEEeCCCCcEEECC----CCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCE--eECC----CCC
Confidence 4888999887763321 12211112222223 56666777653 2466666655432 1111 111
Q ss_pred CCCCeEEEEEeeCCcEEEEecc------CCeEEEEEccCceEEeeccccCC-ceeEEEEcCCCCEEEEecCC-----CcE
Q 024868 111 DAGPQKCLSFSVDGSRFAAGGV------DGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTD-----GSA 178 (261)
Q Consensus 111 ~~~~v~~~~~s~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d-----~~i 178 (261)
.. .....+...+++.++.|+. -..+.+||..+.+-......... .-.+++. -++++++.|+.+ ..+
T Consensus 147 ~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 224 (318)
T 2woz_A 147 IK-VYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASV 224 (318)
T ss_dssp SC-EESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEE
T ss_pred Cc-ccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceE
Confidence 11 1111122257778888764 23589999887653221111111 1122222 257777777653 357
Q ss_pred EEEEccCCcEE
Q 024868 179 RIWKTEDGVAW 189 (261)
Q Consensus 179 ~iwd~~~~~~~ 189 (261)
.+||+.+.+-.
T Consensus 225 ~~yd~~~~~W~ 235 (318)
T 2woz_A 225 EAFDLKTNKWE 235 (318)
T ss_dssp EEEETTTCCEE
T ss_pred EEEECCCCeEE
Confidence 78998876643
No 330
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.18 E-value=0.024 Score=43.88 Aligned_cols=111 Identities=5% Similarity=-0.043 Sum_probs=50.1
Q ss_pred CCcEEEEecc------CCeEEEEEc--cCceEEe--eccccCCceeEEEEcCCCCEEEEecCC-----------------
Q 024868 123 DGSRFAAGGV------DGHLRIMHW--PSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTSTD----------------- 175 (261)
Q Consensus 123 ~~~~l~~~~~------d~~i~~~d~--~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d----------------- 175 (261)
+++.++.|+. ...+..||+ .+.+-.. .+..........+...++++++.|+.+
T Consensus 200 ~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~ 279 (357)
T 2uvk_A 200 GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHE 279 (357)
T ss_dssp TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTT
T ss_pred CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccc
Confidence 6777777763 345777876 3332211 111111111212223367777777632
Q ss_pred -----CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC------cEEEEEECCCCeEEee
Q 024868 176 -----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK------ALLAVYDISTWNKIGH 239 (261)
Q Consensus 176 -----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d------~~i~~~d~~~~~~~~~ 239 (261)
..+.+||+.+.+-...-..... .....+...+++. + +.|+.+ ..+.++++++++.+..
T Consensus 280 ~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~i-~----v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 280 GLKKSYSTDIHLWHNGKWDKSGELSQG-RAYGVSLPWNNSL-L----IIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp TCCCEECCEEEECC---CEEEEECSSC-CBSSEEEEETTEE-E----EEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred cccceeeEEEEecCCCceeeCCCCCCC-cccceeEEeCCEE-E----EEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 2578899886654332211111 1112223345554 3 333322 3577778887776543
No 331
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.04 E-value=0.036 Score=42.22 Aligned_cols=131 Identities=8% Similarity=0.014 Sum_probs=73.9
Q ss_pred EeeecCCCCCceEEEECCC---CCeEEEEec---CCcEEEEEEeCCc-c--c--cceeeeeCCCCCCCCCeEEEEEeeCC
Q 024868 56 TYVFDESEGDPMTIAVNPS---GDDFVCSTT---NGGCKLFEVYGGA-T--D--INLLAKKMPPLQDAGPQKCLSFSVDG 124 (261)
Q Consensus 56 ~~~~~~~~~~v~~~~~~~~---~~~l~~~~~---dg~i~i~~~~~~~-~--~--~~~~~~~~~~~~~~~~v~~~~~s~~~ 124 (261)
.+.+.+|......+...-+ .+.+..+.. .+++.+.++.... . . .+...-........+-..++..|+.-
T Consensus 192 sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~ky 271 (365)
T 2xzh_A 192 SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH 271 (365)
T ss_dssp EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTT
T ss_pred cceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccC
Confidence 5567777655544433211 123333333 2689999985431 1 0 11111111111123455678888877
Q ss_pred cEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCC
Q 024868 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG 186 (261)
Q Consensus 125 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~ 186 (261)
..++.-+.-|.+++||+.++..+..-.-..+.|..-+-+....-++.....|+|.--.++..
T Consensus 272 gviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 272 DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred CEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 77888889999999999999987665545556655555444344444456666655555443
No 332
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=97.02 E-value=0.13 Score=43.89 Aligned_cols=202 Identities=10% Similarity=0.045 Sum_probs=100.5
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeE--EeeecCCCCCceEEEECC-CCCeEEEEecC------CcEEE
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLV--TYVFDESEGDPMTIAVNP-SGDDFVCSTTN------GGCKL 89 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~i 89 (261)
..+++.||.++ ... -.++.||+.+..+...+.. ...++.. ..-.+++..+ +++.++.|+.+ ..+.+
T Consensus 398 ~~iyv~GG~~~--~~~--~~v~~yd~~~~~W~~~~~~~p~~~~p~~-R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 398 NDVFYMGGSNP--YRV--NEILQLSIHYDKIDMKNIEVSSSEVPVA-RMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp SCEEEECCBSS--SBC--CCEEEEEECSSCEEEEECCCCCSCCCCC-CBSCEEEEETTTTEEEEECCBSSTTCBCCCCEE
T ss_pred CEEEEECCCCC--CCc--CcEEEEECCCCeEEEeccCCCCCCCCcc-ccceEEEEEccCCEEEEEcCCCCCCCccccEEE
Confidence 45667776544 111 2478888887766221100 0001111 1122333333 67777777654 34677
Q ss_pred EEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC--eEEEEEccCceEEeecc-----ccCCceeEEEE
Q 024868 90 FEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG--HLRIMHWPSLRIILDEP-----KAHKSVLDMDF 162 (261)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~-----~~~~~v~~~~~ 162 (261)
||..+..- .. ...+.....-.+++.-.+++.++.|+.++ .+.+||..+..-..... ........+.+
T Consensus 473 yd~~t~~W--~~----~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~ 546 (695)
T 2zwa_A 473 FDMKTREW--SM----IKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEF 546 (695)
T ss_dssp EETTTTEE--EE----CCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEE
T ss_pred EeCCCCcE--EE----CCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEE
Confidence 77766432 11 11111111112222223788888887554 68999988765322111 11112233555
Q ss_pred cCC-CCEEEEecC--C-----CcEEEEEccCCcE-----EEEEee--cCCCceEEEEEecCCCcceEEEEEeeCC-----
Q 024868 163 SLD-SEFLATTST--D-----GSARIWKTEDGVA-----WTFLTR--NSDEKIELCRFSKDGTKPFLFCTVQRGD----- 222 (261)
Q Consensus 163 s~~-~~~l~~~~~--d-----~~i~iwd~~~~~~-----~~~~~~--~~~~~v~~~~~~p~~~~~~~~~~~~~~~----- 222 (261)
..+ +++++.|+. + +.+.+||+.+.+. -..+.. .....-.+++...+++. | +.|+.
T Consensus 547 ~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~i-y----v~GG~~~~~~ 621 (695)
T 2zwa_A 547 DPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKL-L----IVGGTSPSGL 621 (695)
T ss_dssp ETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEE-E----EECCBCSSCC
T ss_pred eCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEE-E----EECCccCCCC
Confidence 655 667777765 2 3588999988761 122211 11111122333333554 2 33442
Q ss_pred ---CcEEEEEECCCCeE
Q 024868 223 ---KALLAVYDISTWNK 236 (261)
Q Consensus 223 ---d~~i~~~d~~~~~~ 236 (261)
...+.+||..+.+-
T Consensus 622 ~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 622 FDRTNSIISLDPLSETL 638 (695)
T ss_dssp CCTTTSEEEEETTTTEE
T ss_pred CCCCCeEEEEECCCCeE
Confidence 35699999987654
No 333
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.01 E-value=0.07 Score=40.54 Aligned_cols=187 Identities=12% Similarity=0.112 Sum_probs=90.8
Q ss_pred eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec----CC---c----EE
Q 024868 20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT----NG---G----CK 88 (261)
Q Consensus 20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg---~----i~ 88 (261)
.+++.|+. .++.||+.+..+.. ..+..............++..++.|+. ++ . +.
T Consensus 17 ~i~~~GG~----------~~~~yd~~~~~W~~-----~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~ 81 (318)
T 2woz_A 17 LILLVNDT----------AAVAYDPMENECYL-----TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFF 81 (318)
T ss_dssp EEEEECSS----------EEEEEETTTTEEEE-----EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEE
T ss_pred hhhhcccc----------ceEEECCCCCceec-----ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEE
Confidence 45666663 57899999888632 122221222233334457777777773 12 1 55
Q ss_pred EEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC-------CeEEEEEccCceEEeeccccCCc-eeEE
Q 024868 89 LFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-------GHLRIMHWPSLRIILDEPKAHKS-VLDM 160 (261)
Q Consensus 89 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-------~~i~~~d~~~~~~~~~~~~~~~~-v~~~ 160 (261)
.||..+..- .. ...+.....-.++. .-+++.++.|+.+ ..+.+||..+.+-.......... -.++
T Consensus 82 ~~d~~~~~W--~~----~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 154 (318)
T 2woz_A 82 QLDNVSSEW--VG----LPPLPSARCLFGLG-EVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNV 154 (318)
T ss_dssp EEETTTTEE--EE----CSCBSSCBCSCEEE-EETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEE
T ss_pred EEeCCCCcE--EE----CCCCCccccccceE-EECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEE
Confidence 666655432 11 11111111111122 2267777787753 24788888776532211111111 1122
Q ss_pred EEcCCCCEEEEecC------CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCC-----CcEEEEE
Q 024868 161 DFSLDSEFLATTST------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-----KALLAVY 229 (261)
Q Consensus 161 ~~s~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~-----d~~i~~~ 229 (261)
+. .++++++.|+. -..+.+||+.+.+-...-.......-.+++. -+++. |+ .++. ...+.+|
T Consensus 155 ~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i-yv----~GG~~~~~~~~~~~~y 227 (318)
T 2woz_A 155 IS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKI-VI----AGGVTEDGLSASVEAF 227 (318)
T ss_dssp EE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEE-EE----EEEEETTEEEEEEEEE
T ss_pred EE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEE-EE----EcCcCCCCccceEEEE
Confidence 22 46777777764 2358999998776443321111111112222 24443 32 2322 2468899
Q ss_pred ECCCCe
Q 024868 230 DISTWN 235 (261)
Q Consensus 230 d~~~~~ 235 (261)
|+.+.+
T Consensus 228 d~~~~~ 233 (318)
T 2woz_A 228 DLKTNK 233 (318)
T ss_dssp ETTTCC
T ss_pred ECCCCe
Confidence 987654
No 334
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.89 E-value=0.11 Score=41.17 Aligned_cols=165 Identities=10% Similarity=0.075 Sum_probs=90.4
Q ss_pred eeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC---CCeEEEEecC---CcE
Q 024868 14 KRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS---GDDFVCSTTN---GGC 87 (261)
Q Consensus 14 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d---g~i 87 (261)
.+++..-++++|=........+.+++|..+..- .+.+.+|......+...-+ .+.+..+... +++
T Consensus 158 ~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~---------sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kL 228 (494)
T 1bpo_A 158 TDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV---------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 228 (494)
T ss_dssp ECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC---------EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEE
T ss_pred ECCCCCeEEEEeecccCCcccceEEEeeccccc---------cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEE
Confidence 344334444444322222344445555444332 4567788666555544321 1233344332 789
Q ss_pred EEEEEeCCc---cc--cceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868 88 KLFEVYGGA---TD--INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (261)
Q Consensus 88 ~i~~~~~~~---~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 162 (261)
.+.++.... .. .+...-........+-..++..|+.-..++.-+.-|.+++||+.++..+..-.-....|..-+-
T Consensus 229 hi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~ 308 (494)
T 1bpo_A 229 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAP 308 (494)
T ss_dssp EEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred EEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecc
Confidence 999986441 10 1111111111112345567888987777888889999999999999987665545556665555
Q ss_pred cCCCCEEEEecCCCcEEEEEccCCc
Q 024868 163 SLDSEFLATTSTDGSARIWKTEDGV 187 (261)
Q Consensus 163 s~~~~~l~~~~~d~~i~iwd~~~~~ 187 (261)
+....-++.....|+|.--.++..+
T Consensus 309 ~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 309 HEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp ETTTTEEEEEETTCEEEEEEECTTT
T ss_pred cCCCCcEEEEccCceEEEEEEcccc
Confidence 5544445555566666655555443
No 335
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.018 Score=44.22 Aligned_cols=195 Identities=14% Similarity=0.099 Sum_probs=96.0
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCC-CCCceEEEE--CC-CCCeEEEE-ecCCcEEEEEEe
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-EGDPMTIAV--NP-SGDDFVCS-TTNGGCKLFEVY 93 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~--~~-~~~~l~~~-~~dg~i~i~~~~ 93 (261)
..++++++.+| .++.+|..+++... .++.. ..++....- .+ ++..++.. ..||.|+.++..
T Consensus 10 ~~~V~v~t~dG--------~l~Ald~~tG~~~W------~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~ 75 (339)
T 2be1_A 10 SDILIAADVEG--------GLHAVDRRNGHIIW------SIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAH 75 (339)
T ss_dssp EEEEEEEETTS--------CEEEEETTTTEEEE------EECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETT
T ss_pred CCEEEEEeCCC--------eEEEEECCCCcEEE------EecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECC
Confidence 45788888999 88999988776522 12111 011111110 01 22333332 478888888876
Q ss_pred CCccccceeeeeCCCCCCCCCeEE---EEE-e----eCCcEEEEeccCCeEEEEEccCceEEeeccccCC-c------ee
Q 024868 94 GGATDINLLAKKMPPLQDAGPQKC---LSF-S----VDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-S------VL 158 (261)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~v~~---~~~-s----~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~------v~ 158 (261)
++....... ...+....++.. ... . ..+..+++++.+|.+...|+.+|+.++.+..... . ..
T Consensus 76 ~G~~~~~~~---~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~ 152 (339)
T 2be1_A 76 QGLQKLPLS---IRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVD 152 (339)
T ss_dssp TEEEEEEEE---HHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------
T ss_pred CCcEEeeec---cccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccc
Confidence 653321111 111111122221 000 0 1355788899999999999999999877654321 0 01
Q ss_pred EEEEc-----CCCCEEEEecCCCcEEEEEccCCcEEEEEe-----ecCCC-ce-EEEEEecCCCcceEEEEEeeCCCcEE
Q 024868 159 DMDFS-----LDSEFLATTSTDGSARIWKTEDGVAWTFLT-----RNSDE-KI-ELCRFSKDGTKPFLFCTVQRGDKALL 226 (261)
Q Consensus 159 ~~~~s-----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~-~v-~~~~~~p~~~~~~~~~~~~~~~d~~i 226 (261)
+.... ..+..++.+..+..+.+.+ ++|+ +..+. ..... ++ .....+.|+.+ +.+..||.|
T Consensus 153 ~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~------~~~~~dg~v 224 (339)
T 2be1_A 153 CSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC------IAPFRDKSL 224 (339)
T ss_dssp ------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC------EEEETTTEE
T ss_pred cccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE------EEECCCCEE
Confidence 11111 1234566666666666655 4443 21111 00000 00 00001234555 335678888
Q ss_pred EEEECCCCeEEe
Q 024868 227 AVYDISTWNKIG 238 (261)
Q Consensus 227 ~~~d~~~~~~~~ 238 (261)
..+|..+|+.+.
T Consensus 225 ~A~d~~~G~~~W 236 (339)
T 2be1_A 225 LASDLDFRIARW 236 (339)
T ss_dssp EEECSTTCCEEE
T ss_pred EEEECCCCcEEE
Confidence 888888887764
No 336
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.72 E-value=0.13 Score=39.62 Aligned_cols=49 Identities=4% Similarity=-0.130 Sum_probs=25.7
Q ss_pred CeEEEEEccCceEEe--eccccCCceeEEEEcCCCCEEEEecC------CCcEEEEEc
Q 024868 134 GHLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTST------DGSARIWKT 183 (261)
Q Consensus 134 ~~i~~~d~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~------d~~i~iwd~ 183 (261)
..+.+||..+.+-.. .+......-.+++.. ++++++.|+. ...+.+||+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEEC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEe
Confidence 578999987765321 111111111233332 5667777664 245777887
No 337
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.50 E-value=0.46 Score=43.05 Aligned_cols=176 Identities=13% Similarity=0.194 Sum_probs=98.9
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEE---ECCC-CCeEEEEe----------cCCcEEEEEEeCCccccceee
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIA---VNPS-GDDFVCST----------TNGGCKLFEVYGGATDINLLA 103 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~-~~~l~~~~----------~dg~i~i~~~~~~~~~~~~~~ 103 (261)
.+..+|+.+.+. .....+... ..+.+++ |..+ ..++++|. ..|.|++|++...+. +++
T Consensus 808 ~i~lidp~t~~~----i~~~~l~~n-E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL--~lv- 879 (1158)
T 3ei3_A 808 NLLIIDQHTFEV----LHAHQFLQN-EYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKL--QTV- 879 (1158)
T ss_dssp EEEEEETTTCCE----EEEEECCTT-EEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEE--EEE-
T ss_pred EEEEEeCCCCeE----EEEEeCCCC-cceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEE--EEE-
Confidence 355566655442 223334332 2344444 3332 46788775 248899999984321 111
Q ss_pred eeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEc
Q 024868 104 KKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKT 183 (261)
Q Consensus 104 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~ 183 (261)
.....++++++++-- +|+ |+++ ...++++|++...+.+.........+..+.....+++++.|..-..+.++..
T Consensus 880 ---~~~~v~g~v~al~~~-~g~-Lla~-ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y 953 (1158)
T 3ei3_A 880 ---AEKEVKGAVYSMVEF-NGK-LLAS-INSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAY 953 (1158)
T ss_dssp ---EEEEESSCEEEEEEE-TTE-EEEE-ETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEE
T ss_pred ---EEEEcCCcCEEEeee-CCE-EEEE-cCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEE
Confidence 111225678776533 464 4444 4678999999766533311111222333333345778888887777776554
Q ss_pred c--CCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868 184 E--DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (261)
Q Consensus 184 ~--~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~ 233 (261)
+ .++....-.......++++.|-.++. ++.+..+|.+.++....
T Consensus 954 ~~~~~~L~~~a~D~~~~~vta~~~ld~~t------~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 954 KPMEGNFEEIARDFNPNWMSAVEILDDDN------FLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp ETTTTEEEEEEECCSCBCEEEEEEEETTE------EEEEETTSEEEEEEECT
T ss_pred EcCCCeEEEEEeecccccEEEEEEEccCc------EEEEcCCCcEEEEecCC
Confidence 3 44443333333344688888877664 36678889999987653
No 338
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.49 E-value=0.19 Score=38.39 Aligned_cols=193 Identities=10% Similarity=0.046 Sum_probs=107.5
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEE
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC 117 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 117 (261)
.+..||.+++.. +..+.+ ...|.--.|-.+. .|+..+ +..|+-|++.+...+.+........ . ...|..
T Consensus 88 ~LQiFnletK~k----lks~~~---~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L-~-~~QIIn 156 (365)
T 2xzh_A 88 TLQIFNIEMKSK----MKAHTM---TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL-A-GCQIIN 156 (365)
T ss_dssp EEEEEETTTTEE----EEEEEC---SSCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEEECCGGG-T-TCEEEE
T ss_pred eEEEechHHhhh----hcceec---CCccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceeeecchhc-c-cceEEE
Confidence 677788877653 222333 2567777786544 344433 4569999998766555555443222 2 367777
Q ss_pred EEEeeCCcEEEEec-------cCCeEEEEEccCceEEeeccccCCceeEEEEcC--C-CCEEEEecC---CCcEEEEEcc
Q 024868 118 LSFSVDGSRFAAGG-------VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL--D-SEFLATTST---DGSARIWKTE 184 (261)
Q Consensus 118 ~~~s~~~~~l~~~~-------~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~--~-~~~l~~~~~---d~~i~iwd~~ 184 (261)
...+++.++++..+ ..|.+.+|..+.+.. +.+.+|-.....+.+.. . .++++.+.. .+.++|-++.
T Consensus 157 Y~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~ 235 (365)
T 2xzh_A 157 YRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVG 235 (365)
T ss_dssp EEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECS
T ss_pred EEECCCCCEEEEEeEeccCCccceeEEEEeeccccc-ceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcC
Confidence 88888889877654 236788998776544 33444333332222211 1 123443332 2578888874
Q ss_pred CC---c------EEEEEeec--CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCe
Q 024868 185 DG---V------AWTFLTRN--SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPA 247 (261)
Q Consensus 185 ~~---~------~~~~~~~~--~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v 247 (261)
.. . .+..+... ...-.-++..++.-..+ ..-..-|.|++||++++.++..-......|
T Consensus 236 ~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygvi-----yviTK~G~ihlyDleTgt~i~~nrIS~d~i 304 (365)
T 2xzh_A 236 TPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV-----FLITKYGYIHLYDLETGTCIYMNRISGETI 304 (365)
T ss_dssp SCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEE-----EEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred CCCCCCCCcccccceeeCCccccCCceEEEEecccCCEE-----EEEeCCcEEEEEEcccCcEEEEeccCCCce
Confidence 32 1 11111111 11123456666655542 333466899999999999875544444443
No 339
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.014 Score=44.86 Aligned_cols=112 Identities=14% Similarity=0.158 Sum_probs=70.2
Q ss_pred cEEEEeccCCeEEEEEccCceEEeeccccC-CceeEEEE--cC-CCCEEEEe-cCCCcEEEEEccCCcEEEEEeecC---
Q 024868 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDMDF--SL-DSEFLATT-STDGSARIWKTEDGVAWTFLTRNS--- 196 (261)
Q Consensus 125 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~--s~-~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~--- 196 (261)
..+++++.||.|+-+|..+|+..+.+.... .++....- .+ ++..++.. +.||.++.++..+|.....+....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 367788899999999999999988776541 22222110 11 23334343 589999999998886554443211
Q ss_pred CCceEE---EEE------ecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868 197 DEKIEL---CRF------SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (261)
Q Consensus 197 ~~~v~~---~~~------~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~ 242 (261)
..++.. ... +.++. +++++.+|.+...|+++|+.+..+..
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~------Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEK------VYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TCSEEEECC----------CCEE------EEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ccccccCCCceeecccccccCCE------EEEEecCCEEEEEECCCCcEEEEEec
Confidence 111211 000 12333 57889999999999999998876653
No 340
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.23 E-value=0.035 Score=45.41 Aligned_cols=71 Identities=7% Similarity=0.010 Sum_probs=50.3
Q ss_pred ceeEEEEcCCCCEEEEec-CCCcEEEEEccC------CcE-------EEEEeecCCCceEEEEEecCCCcceEEEEEeeC
Q 024868 156 SVLDMDFSLDSEFLATTS-TDGSARIWKTED------GVA-------WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG 221 (261)
Q Consensus 156 ~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~~------~~~-------~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~ 221 (261)
....+..+|||++++.++ .+.++.++|++. ++. ..... .+......+|.++|.- ..+--
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--~GlGPlHt~Fd~~G~a-----YTtlf 396 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--LGLGPLHTTFDGRGNA-----YTTLF 396 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--CCSCEEEEEECSSSEE-----EEEET
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--CCCcccEEEECCCCce-----Eeeee
Confidence 456789999999988766 478999999873 221 22222 2334778999999942 24445
Q ss_pred CCcEEEEEECCC
Q 024868 222 DKALLAVYDIST 233 (261)
Q Consensus 222 ~d~~i~~~d~~~ 233 (261)
-|.+|.-|++..
T Consensus 397 idSqvvkWni~~ 408 (638)
T 3sbq_A 397 IDSQVVKWNMEE 408 (638)
T ss_dssp TTTEEEEEEHHH
T ss_pred ecceEEEEeccH
Confidence 788999999864
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.10 E-value=0.38 Score=41.02 Aligned_cols=161 Identities=14% Similarity=0.128 Sum_probs=84.3
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC--cEEEEEEeCCc
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG--GCKLFEVYGGA 96 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~~~~~~~ 96 (261)
..+++.||.++....-+ .++.||+.+..+...+ .++.. ..-.+.+.-.+++.++.|+.++ .+.+||..+..
T Consensus 452 ~~lyv~GG~~~~~~~~~--dv~~yd~~t~~W~~~~----~~p~~-R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~ 524 (695)
T 2zwa_A 452 NQLLLIGGRKAPHQGLS--DNWIFDMKTREWSMIK----SLSHT-RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI 524 (695)
T ss_dssp TEEEEECCBSSTTCBCC--CCEEEETTTTEEEECC----CCSBC-CBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE
T ss_pred CEEEEEcCCCCCCCccc--cEEEEeCCCCcEEECC----CCCCC-cccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc
Confidence 45677777654222222 4788898887763221 11111 1122333334788888887654 68888887654
Q ss_pred cccceeeeeCCCCC-CCCCeEEEEEeeC-CcEEEEecc--C-----CeEEEEEccCce------E--EeeccccCCceeE
Q 024868 97 TDINLLAKKMPPLQ-DAGPQKCLSFSVD-GSRFAAGGV--D-----GHLRIMHWPSLR------I--ILDEPKAHKSVLD 159 (261)
Q Consensus 97 ~~~~~~~~~~~~~~-~~~~v~~~~~s~~-~~~l~~~~~--d-----~~i~~~d~~~~~------~--~~~~~~~~~~v~~ 159 (261)
- ..... ..... .......+.+..+ ++.++.|+. + ..+..||+.+.. - +.........-.+
T Consensus 525 W--~~~~~-~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~ 601 (695)
T 2zwa_A 525 F--KDVTP-KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQ 601 (695)
T ss_dssp E--EECCC-SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCE
T ss_pred e--EEccC-CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccce
Confidence 2 11110 00011 1112233555555 677788765 2 458899988766 1 1111111111123
Q ss_pred EEEcCCCCEEEEecC--------CCcEEEEEccCCcEE
Q 024868 160 MDFSLDSEFLATTST--------DGSARIWKTEDGVAW 189 (261)
Q Consensus 160 ~~~s~~~~~l~~~~~--------d~~i~iwd~~~~~~~ 189 (261)
+....++++++.|+. ...+.+||+.+.+..
T Consensus 602 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 602 IKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 333334777777774 346899999887654
No 342
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=96.00 E-value=0.24 Score=39.92 Aligned_cols=112 Identities=13% Similarity=0.091 Sum_probs=60.4
Q ss_pred CCceEEEECCCCC-eEEEEecCCcEEEEEEeCCccccceeeeeCCCC-----CCCCCeEEEEEeeC----CcEEEEecc-
Q 024868 64 GDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL-----QDAGPQKCLSFSVD----GSRFAAGGV- 132 (261)
Q Consensus 64 ~~v~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~----~~~l~~~~~- 132 (261)
.....++|.|+|. +|+++...|.|++++.........+........ ........++|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4567899999996 566667889999986433211111111000011 11356789999996 444333221
Q ss_pred -C----------CeEEEEEccC----------ceEEeecc--ccCCceeEEEEcCCCCEEEEecCC
Q 024868 133 -D----------GHLRIMHWPS----------LRIILDEP--KAHKSVLDMDFSLDSEFLATTSTD 175 (261)
Q Consensus 133 -d----------~~i~~~d~~~----------~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d 175 (261)
+ ..|.-|.+.. .+.+.... ........|.|.|||.+.++.++.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 1344455432 12222222 111236789999999877776543
No 343
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.98 E-value=0.45 Score=37.89 Aligned_cols=193 Identities=9% Similarity=0.030 Sum_probs=108.5
Q ss_pred EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEE
Q 024868 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC 117 (261)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 117 (261)
.+..||.+++.. ...+.+. ..|.--.|-.+. .|+.. .+..|+-|++.+...+.+........ . ...|..
T Consensus 87 ~lQiFnle~K~k----lks~~~~---e~VvfWkWis~~-~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L-~-~~QIIn 155 (494)
T 1bpo_A 87 TLQIFNIEMKSK----MKAHTMT---DDVTFWKWISLN-TVALV-TDNAVYHWSMEGESQPVKMFDRHSSL-A-GCQIIN 155 (494)
T ss_dssp EEEEEETTTTEE----EEEEECS---SCCCEEEEEETT-EEEEE-CSSEEEEEESSSSCCCEEEEECCGGG-T-TCEEEE
T ss_pred eEEEEchHHhhh----hcceecC---CCceEEEecCCC-eEEEE-cCCeeEEecccCCCCchhheecchhc-c-cceEEE
Confidence 677777777653 2222332 456666775443 34443 35569999998766555555443222 2 367778
Q ss_pred EEEeeCCcEEEEec-------cCCeEEEEEccCceEEeeccccCCceeEEEEcCC---CCEEEEecC---CCcEEEEEcc
Q 024868 118 LSFSVDGSRFAAGG-------VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD---SEFLATTST---DGSARIWKTE 184 (261)
Q Consensus 118 ~~~s~~~~~l~~~~-------~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~---d~~i~iwd~~ 184 (261)
...+++.++++..+ ..|.+.+|..+.+.. +.+.+|-.....+....+ .+.++.+.. .+.++|.++.
T Consensus 156 Y~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~ 234 (494)
T 1bpo_A 156 YRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVG 234 (494)
T ss_dssp EEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECS
T ss_pred EEECCCCCeEEEEeecccCCcccceEEEeecccccc-chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcC
Confidence 88888999877554 246788998776544 334444333333333211 124444443 2688888885
Q ss_pred CC---c-----EEEEEe-ec--CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCe
Q 024868 185 DG---V-----AWTFLT-RN--SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPA 247 (261)
Q Consensus 185 ~~---~-----~~~~~~-~~--~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v 247 (261)
.. . ....+. .. ...-..++..++.-..+ ..-..-|.|++||++++..+..-......|
T Consensus 235 ~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygvi-----yviTK~G~i~lyDleTgt~i~~nrIs~~~i 303 (494)
T 1bpo_A 235 TPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV-----FLITKYGYIHLYDLETGTCIYMNRISGETI 303 (494)
T ss_dssp CCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEE-----EEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred CCccCCCCccceeeeeeCCcccccCceeEEEecccCCEE-----EEEecCceEEEEecccceeeeeecccCCce
Confidence 32 1 111111 11 11124467777766653 334467899999999999875444443333
No 344
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.95 E-value=0.7 Score=39.78 Aligned_cols=197 Identities=10% Similarity=-0.005 Sum_probs=105.7
Q ss_pred EEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEE
Q 024868 39 IFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCL 118 (261)
Q Consensus 39 i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 118 (261)
++.||..+..+.. ........|.++.. .++ .|..++.+| +..++..+.... ........+ ....|.++
T Consensus 84 l~~yd~~~~~f~~------~~~~~~~~i~~i~~-~~g-~lWigt~~G-l~~~~~~~~~~~--~~~~~~~~l-~~~~i~~i 151 (758)
T 3ott_A 84 ILVYNYRADRYEQ------PETDFPTDVRTMAL-QGD-TLWLGALNG-LYTYQLQSRKLT--SFDTRRNGL-PNNTIYSI 151 (758)
T ss_dssp EEEEETTTTEECC------CSCCCCSCEEEEEE-ETT-EEEEEETTE-EEEEETTTCCEE--EECHHHHCC-SCSCEEEE
T ss_pred eEEEeCCCCEEEC------cccCCCceEEEEEe-cCC-cEEEEcCCc-ceeEeCCCCeEE--EeccCCCCc-CCCeEEEE
Confidence 6788887765421 01111234666654 355 455566664 888887654321 110000011 13467888
Q ss_pred EEeeCCcEEEEeccCCeEEEEEccCceEEeeccc-c----CCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEe
Q 024868 119 SFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK-A----HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT 193 (261)
Q Consensus 119 ~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~----~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 193 (261)
....++++.+. +.. -+..++..+++....... . ...|.++...+++..|..++. +.+..+|..+++......
T Consensus 152 ~~d~~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~ 228 (758)
T 3ott_A 152 IRTKDNQIYVG-TYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEA 228 (758)
T ss_dssp EECTTCCEEEE-ETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEE
T ss_pred EEcCCCCEEEE-eCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccC
Confidence 77777776553 344 477888766553221111 1 124788888777665555553 458889987765432211
Q ss_pred ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee-------ccCcCeeEEEEeeCCCE
Q 024868 194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-------LLRKPASVLSISLDGKY 258 (261)
Q Consensus 194 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~-------~~~~~v~~~~~s~dg~~ 258 (261)
.. ...|.++....+|.. ..+..+| +.++|..+++...... .....|.++....+|..
T Consensus 229 l~-~~~i~~i~~d~~g~l------WigT~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l 292 (758)
T 3ott_A 229 FH-NNSIKSLALDGNGDL------LAGTDNG-LYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNI 292 (758)
T ss_dssp EE-EEEEEEEEECTTCCE------EEEETTE-EEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCE
T ss_pred CC-CCeEEEEEEcCCCCE------EEEeCCc-eeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCE
Confidence 11 224888887777775 2233444 7888887654321111 11235777776666653
No 345
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.33 E-value=0.99 Score=37.22 Aligned_cols=73 Identities=22% Similarity=0.267 Sum_probs=52.1
Q ss_pred CCeEEEEEeeCCcEEEEec-cCCeEEEEEccCceE------------EeeccccCCceeEEEEcCCCCEEEEecCCCcEE
Q 024868 113 GPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRI------------ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSAR 179 (261)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 179 (261)
.....+..+|||+++++++ -+.++.++|+++... +.......-.....+|.++|.-..+..-|.+|.
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence 3446788999999988876 678899999874211 111122223568899999996555666899999
Q ss_pred EEEccC
Q 024868 180 IWKTED 185 (261)
Q Consensus 180 iwd~~~ 185 (261)
-|++..
T Consensus 403 kWni~~ 408 (638)
T 3sbq_A 403 KWNMEE 408 (638)
T ss_dssp EEEHHH
T ss_pred EEeccH
Confidence 999874
No 346
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.21 E-value=0.88 Score=42.00 Aligned_cols=168 Identities=10% Similarity=0.067 Sum_probs=90.4
Q ss_pred EEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEEC--CC-CCeEEEEec---CC
Q 024868 12 WIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVN--PS-GDDFVCSTT---NG 85 (261)
Q Consensus 12 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~~~l~~~~~---dg 85 (261)
+..+++..-++++|=........+.++++..+..-.+ .+.+|......+... +. ...+..+.. .+
T Consensus 156 Y~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ---------~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~ 226 (1630)
T 1xi4_A 156 YRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ---------PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG 226 (1630)
T ss_pred eeeCCCCCeEEEEeeccCCCcccceeeeeecccccch---------hhhHhHhhhheeccCCCCCCceEEEEEEecCCCc
Confidence 3344444555555554444466777777777654433 466776665555442 22 223333222 26
Q ss_pred cEEEEEEeCCccc-cceeeeeC-CCCC---CCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEE
Q 024868 86 GCKLFEVYGGATD-INLLAKKM-PPLQ---DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (261)
Q Consensus 86 ~i~i~~~~~~~~~-~~~~~~~~-~~~~---~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~ 160 (261)
++.|-++...... .....+.. ..++ ...-..++..|+.-..+...+.-|.+++||+.++..+..-.-....|...
T Consensus 227 kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~ 306 (1630)
T 1xi4_A 227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVT 306 (1630)
T ss_pred eEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEe
Confidence 8999988654110 00000000 0111 12334567778766677777799999999999998865444334455555
Q ss_pred EEcCCCCEEEEecCCCcEEEEEccCCcE
Q 024868 161 DFSLDSEFLATTSTDGSARIWKTEDGVA 188 (261)
Q Consensus 161 ~~s~~~~~l~~~~~d~~i~iwd~~~~~~ 188 (261)
+-++...-++.....|+|.--.++..+.
T Consensus 307 ~~~~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 307 APHEATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred ccCCCCCceEEEcCCceEEEEEEccchh
Confidence 4444333344444666665555554443
No 347
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.67 E-value=1.9 Score=39.91 Aligned_cols=163 Identities=10% Similarity=0.034 Sum_probs=87.9
Q ss_pred CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-------cCCeE
Q 024868 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-------VDGHL 136 (261)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------~d~~i 136 (261)
.+|.--.|-.+.. |+.. .+..|+-|++.+...+.+........ . ...|....-+++.++++..+ ..|.+
T Consensus 106 e~VvfWkWis~~~-l~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L-~-~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~m 181 (1630)
T 1xi4_A 106 DDVTFWKWISLNT-VALV-TDNAVYHWSMEGESQPVKMFDRHSSL-A-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAM 181 (1630)
T ss_pred CCceEEEecCCCe-eEEE-cCCeEEEeccCCCCccHHHHhcchhc-c-cCeeEEeeeCCCCCeEEEEeeccCCCccccee
Confidence 4566667754443 4333 34569999998755544444332222 1 35677788888998877544 34788
Q ss_pred EEEEccCceEEeeccccCCceeEEEEc--C-CCCEEEEecC---CCcEEEEEccCC---cEEE------EEeec---CCC
Q 024868 137 RIMHWPSLRIILDEPKAHKSVLDMDFS--L-DSEFLATTST---DGSARIWKTEDG---VAWT------FLTRN---SDE 198 (261)
Q Consensus 137 ~~~d~~~~~~~~~~~~~~~~v~~~~~s--~-~~~~l~~~~~---d~~i~iwd~~~~---~~~~------~~~~~---~~~ 198 (261)
.+|..+.+.. +.+.+|-.....+... + ..+.++.+.. .+.++|-++... .+.. .+... .+.
T Consensus 182 QLyS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Df 260 (1630)
T 1xi4_A 182 QLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDF 260 (1630)
T ss_pred eeeecccccc-hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCc
Confidence 8998765443 2333333322222221 1 1223333222 367888887432 1111 11111 121
Q ss_pred ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEE
Q 024868 199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI 237 (261)
Q Consensus 199 ~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~ 237 (261)
..++..++.-.. +..-..-|.+++||+.++..+
T Consensus 261 -pv~~~vs~k~g~-----iy~itk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 261 -PVAMQISEKHDV-----VFLITKYGYIHLYDLETGTCI 293 (1630)
T ss_pred -ceEEEeccccCE-----EEEEecCceEEEEecccchhh
Confidence 334555655554 233456789999999998875
No 348
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=93.96 E-value=2.7 Score=36.12 Aligned_cols=175 Identities=9% Similarity=0.034 Sum_probs=97.9
Q ss_pred CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC
Q 024868 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (261)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 143 (261)
..|.++....+| .|..++.+| +..||..+..... ... .....|.++.. .++. |..++.+ -+..+|..+
T Consensus 63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~-----~~~--~~~~~i~~i~~-~~g~-lWigt~~-Gl~~~~~~~ 130 (758)
T 3ott_A 63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ-----PET--DFPTDVRTMAL-QGDT-LWLGALN-GLYTYQLQS 130 (758)
T ss_dssp SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC-----CSC--CCCSCEEEEEE-ETTE-EEEEETT-EEEEEETTT
T ss_pred ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC-----ccc--CCCceEEEEEe-cCCc-EEEEcCC-cceeEeCCC
Confidence 468888777666 455666666 8888876643211 000 11235666654 4554 4455445 588888766
Q ss_pred ceEEeecc----ccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecC-----CCceEEEEEecCCCcceE
Q 024868 144 LRIILDEP----KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-----DEKIELCRFSKDGTKPFL 214 (261)
Q Consensus 144 ~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~p~~~~~~~ 214 (261)
++...... .....|.++...++|++.+.. . +-+..+|..+++... +.... ...|.++...+++..++
T Consensus 131 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lW- 206 (758)
T 3ott_A 131 RKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGT-Y-NGLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVW- 206 (758)
T ss_dssp CCEEEECHHHHCCSCSCEEEEEECTTCCEEEEE-T-TEEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEE-
T ss_pred CeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEe-C-CCHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEE-
Confidence 55322101 112358888888788766543 3 357788877665432 22111 12377887777766422
Q ss_pred EEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEE
Q 024868 215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL 259 (261)
Q Consensus 215 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 259 (261)
.+.. +-+..||..+++...........|.++...++|.+.
T Consensus 207 ----igt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW 246 (758)
T 3ott_A 207 ----IGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLL 246 (758)
T ss_dssp ----EEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEE
T ss_pred ----EEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEE
Confidence 2222 348889987765432222223456777776666643
No 349
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=93.46 E-value=4.4 Score=36.89 Aligned_cols=184 Identities=9% Similarity=0.029 Sum_probs=92.6
Q ss_pred CCCceEEEECCC------CCeEEEEec-CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccC
Q 024868 63 EGDPMTIAVNPS------GDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVD 133 (261)
Q Consensus 63 ~~~v~~~~~~~~------~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d 133 (261)
...|.|+++.|. ++++++|.. |++++|+++.+.+... ...+.......++.+.. ...+|.+|-.|
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~------~~~L~~~~~p~si~l~~~~~~~~L~igl~d 626 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH------KEMLGGEIIPRSILMTTFESSHYLLCALGD 626 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE------EEECCSSCCEEEEEEEEETTEEEEEEEETT
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE------EEECCCCCCCcEEEEEEeCCCcEEEEEeCC
Confidence 457999999763 368888886 9999999997543211 11121222345554443 23467888889
Q ss_pred CeEEEEEcc--CceEEe--eccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCce-EEEEEecC
Q 024868 134 GHLRIMHWP--SLRIIL--DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKI-ELCRFSKD 208 (261)
Q Consensus 134 ~~i~~~d~~--~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v-~~~~~~p~ 208 (261)
|.+.-+.+. +++... ...-...++.=..+...|..-+.+..+....++.-+ ++.... .-....+ ....|+..
T Consensus 627 G~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s--~l~~~~v~~~~~F~se 703 (1158)
T 3ei3_A 627 GALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS--NVNLKEVNYMCPLNSD 703 (1158)
T ss_dssp SEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE--EBSSSCCCEEEEECCS
T ss_pred CeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe--ccChHHhceEeccCcc
Confidence 987655543 333221 111123344444444444433333334555555433 332221 1111123 23345432
Q ss_pred C-CcceEEEEEeeCCCcEEEEEECCCCeEEee-eeccCcCeeEEEEeeCCCEEe
Q 024868 209 G-TKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSISLDGKYLA 260 (261)
Q Consensus 209 ~-~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s~dg~~la 260 (261)
. ..- ++... ++.++|..+...+.... ....+..+..++++|+.+.++
T Consensus 704 ~~~~g----~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~ 752 (1158)
T 3ei3_A 704 GYPDS----LALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFG 752 (1158)
T ss_dssp SSTTE----EEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEE
T ss_pred cCCCc----EEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEE
Confidence 2 110 12222 34588887754332211 123446778888888776544
No 350
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=93.08 E-value=2.9 Score=33.71 Aligned_cols=19 Identities=26% Similarity=0.174 Sum_probs=15.1
Q ss_pred CeEEEEEeeCCcEEEEecc
Q 024868 114 PQKCLSFSVDGSRFAAGGV 132 (261)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~~ 132 (261)
.-..|+|.|||.++++.+.
T Consensus 140 ~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 140 LGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CEEEEEECTTSCEEEEECC
T ss_pred cCCcEeECCCCcEEEEeCC
Confidence 4688999999987777654
No 351
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=91.85 E-value=0.7 Score=38.45 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=43.1
Q ss_pred eeEEEEcCCCCEEEEecCC------------CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcce
Q 024868 157 VLDMDFSLDSEFLATTSTD------------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213 (261)
Q Consensus 157 v~~~~~s~~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 213 (261)
.-.|.|+|.|++++.-..+ +.+.+.+..+++..+.+..+.+..++.++|+||++.+|
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlf 546 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLF 546 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEE
Confidence 4679999999977664322 24566677778887777777777899999999999854
No 352
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=90.95 E-value=8.3 Score=34.35 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=32.9
Q ss_pred ceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEe
Q 024868 156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT 193 (261)
Q Consensus 156 ~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 193 (261)
.+.++...++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46677778888899999999999999999999988764
No 353
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=89.64 E-value=2.4 Score=35.06 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=41.3
Q ss_pred ceeEEEEcCCCCEEEEecC------------CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceE
Q 024868 156 SVLDMDFSLDSEFLATTST------------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (261)
Q Consensus 156 ~v~~~~~s~~~~~l~~~~~------------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 214 (261)
....|.|+++|.+.+.... .+.+..++..+++....+.......++.++|+||++.+|+
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV 547 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFV 547 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEE
Confidence 4568999999987773321 1256667777788766555444446899999999998543
No 354
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=87.60 E-value=11 Score=31.38 Aligned_cols=59 Identities=17% Similarity=0.062 Sum_probs=39.1
Q ss_pred CeEEEEEeeCCcEEEEeccC------------CeEEEEEccCceEEeeccccC-CceeEEEEcCCCCEEEEe
Q 024868 114 PQKCLSFSVDGSRFAAGGVD------------GHLRIMHWPSLRIILDEPKAH-KSVLDMDFSLDSEFLATT 172 (261)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~~d------------~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~ 172 (261)
..-.|+|+|+|++++.-..+ ..+.+.+..+++..+-..... .+++.++|+||++.|+..
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 45678999999976664322 235555666666543333333 479999999999877664
No 355
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.38 E-value=17 Score=33.14 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=31.3
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEe
Q 024868 157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT 193 (261)
Q Consensus 157 v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 193 (261)
+-+++..++..++++-+.|+++|||++.+++++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 4455666788899999999999999999999988754
No 356
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=79.60 E-value=12 Score=31.06 Aligned_cols=61 Identities=15% Similarity=0.043 Sum_probs=41.0
Q ss_pred CCeEEEEEeeCCcEEEEecc------------CCeEEEEEccCceEEeecccc-CCceeEEEEcCCCCEEEEec
Q 024868 113 GPQKCLSFSVDGSRFAAGGV------------DGHLRIMHWPSLRIILDEPKA-HKSVLDMDFSLDSEFLATTS 173 (261)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~------------d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~ 173 (261)
.....|.|+++|.+.+.... ...+..++..+++........ ...+..++|+||++.|++.-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 55678999999987774321 125666776667654333222 24689999999999887653
No 357
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.70 E-value=9.9 Score=34.62 Aligned_cols=36 Identities=8% Similarity=0.080 Sum_probs=29.5
Q ss_pred CeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee
Q 024868 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD 149 (261)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 149 (261)
.+.+++..++.+++++-+.|+++++|++.+++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t 274 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 274 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence 455566677888999999999999999999987654
No 358
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=77.08 E-value=36 Score=29.56 Aligned_cols=156 Identities=12% Similarity=0.076 Sum_probs=75.1
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecC------CCCCceEEEECCC-C
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE------SEGDPMTIAVNPS-G 75 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~-~ 75 (261)
.++.|.+++++|.. ...+.+++..+ .|+..+.....+. ..... ....+.++++.|. .
T Consensus 13 ~~g~i~~i~~~p~~--~~~~~a~~~~g--------gv~rS~DgG~tW~------~~~~~~~~~~~~~~~i~~ia~dp~~~ 76 (789)
T 1sqj_A 13 GGGYITGIVAHPKT--KDLLYARTDIG--------GAYRWDAGTSKWI------PLNDFIEAQDMNIMGTESIALDPNNP 76 (789)
T ss_dssp BCSCEEEEEECSSS--TTCEEEEESSS--------CEEEEETTTTEEE------ESCTTCCGGGGGGCSEEEEEEETTEE
T ss_pred CCCcEEEEEECCCC--CCEEEEEecCC--------CEEEecCCCCCee------ECccCCCcccccCCceeEEEECCCCC
Confidence 35789999998863 33444455445 4666665555541 11111 1246899999884 3
Q ss_pred CeEEEEecCCc----EEEEEEeCCccccceeeeeCCC---CCCCCCeEEEEEeeC-CcEEEEeccCCeEEEEEccCce--
Q 024868 76 DDFVCSTTNGG----CKLFEVYGGATDINLLAKKMPP---LQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLR-- 145 (261)
Q Consensus 76 ~~l~~~~~dg~----i~i~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~-- 145 (261)
+.++.+..+.. -.||...++............. ......+..++++|. ...++.+...+.|.. ..+.++
T Consensus 77 ~~i~~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW 155 (789)
T 1sqj_A 77 DRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTW 155 (789)
T ss_dssp EEEEEEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSC
T ss_pred CEEEEEeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCccc
Confidence 44444432211 4455554443323222111110 111123556888874 445555553443322 222222
Q ss_pred -EEeecc---ccCCceeEEEEcC-CCCEEEEecCC
Q 024868 146 -IILDEP---KAHKSVLDMDFSL-DSEFLATTSTD 175 (261)
Q Consensus 146 -~~~~~~---~~~~~v~~~~~s~-~~~~l~~~~~d 175 (261)
.+.... .....+..+.++| ++..++.+..+
T Consensus 156 ~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 156 TNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred CCCccCccccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 111111 1113578888988 44455555544
No 359
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=75.44 E-value=22 Score=26.27 Aligned_cols=119 Identities=11% Similarity=0.053 Sum_probs=71.5
Q ss_pred CCCceEEEECC-CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEc
Q 024868 63 EGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (261)
Q Consensus 63 ~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~ 141 (261)
...|..+.... +...++..+.+|.++...+..-. ... -......+.....+..+........++..+..|.+..+..
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~-~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~ 144 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YKA-QGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSV 144 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TCS-TTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hhc-CCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEh
Confidence 45566654421 46788889999999998876543 111 1111222333456666655555557777778998887775
Q ss_pred cC---------ceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEcc
Q 024868 142 PS---------LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184 (261)
Q Consensus 142 ~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~ 184 (261)
.. |.....+ .....|..+...+++..++..+..|.++...+.
T Consensus 145 ~eip~~gR~a~Gv~~i~L-~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~ 195 (276)
T 3no0_A 145 REVPPSTPGARGVQGIKL-EKNDETSGLRIWNGEPYLLVITAKGRVKKISHE 195 (276)
T ss_dssp GGSCBCCTTCCCEECCCC-CTTCCEEEEEEESSCSEEEEEETTSCEEEEEGG
T ss_pred hhCCCcCCCCCCEEEEcc-CCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHH
Confidence 32 1111111 223456665555566788888889998888875
No 360
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=73.84 E-value=7 Score=33.39 Aligned_cols=36 Identities=11% Similarity=0.130 Sum_probs=29.2
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee
Q 024868 157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR 194 (261)
Q Consensus 157 v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 194 (261)
|.++.+ +..++++-+.|..+|+|++++++++.+...
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 444433 477999999999999999999998887754
No 361
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=70.31 E-value=33 Score=26.09 Aligned_cols=157 Identities=10% Similarity=0.068 Sum_probs=80.2
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCcee-cCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEe--CC
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY-TSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY--GG 95 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~--~~ 95 (261)
...+++.+.+| .+.......-... ........+.. .+.+..+........|+..+..|.+..+... .-
T Consensus 109 e~~~v~~T~~G--------~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~ei 179 (327)
T 3uc1_A 109 APYLVLATRNG--------LVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEAL 179 (327)
T ss_dssp SSEEEEEETTS--------EEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTS
T ss_pred CCEEEEEcCCC--------EEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECccccc
Confidence 44666677777 5554443221110 01122223433 3455555555555677778899988888877 32
Q ss_pred ccccc-eeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE-------Eeec--cccCCceeEEEEcCC
Q 024868 96 ATDIN-LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-------ILDE--PKAHKSVLDMDFSLD 165 (261)
Q Consensus 96 ~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-------~~~~--~~~~~~v~~~~~s~~ 165 (261)
....+ ........+.....|.++...+++..++..+..|.++.-.+..-.. +..+ ....+.+-.+....+
T Consensus 180 p~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~ 259 (327)
T 3uc1_A 180 RPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDD 259 (327)
T ss_dssp CCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECT
T ss_pred CcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCC
Confidence 21111 0111122334456677776666667888888999888877542211 1111 111233444433333
Q ss_pred CCEEEEecCCCcEEEEEcc
Q 024868 166 SEFLATTSTDGSARIWKTE 184 (261)
Q Consensus 166 ~~~l~~~~~d~~i~iwd~~ 184 (261)
...++..+.+|.+.-++..
T Consensus 260 ~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 260 DSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp TCEEEEEEGGGCEEEEEGG
T ss_pred CccEEEEcCCCeEEEEehh
Confidence 4445555556666666654
No 362
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=69.42 E-value=54 Score=28.15 Aligned_cols=118 Identities=9% Similarity=0.014 Sum_probs=61.8
Q ss_pred EEEE-EeeCCcEEEEec-cC----CeEEEEEccCceEEeeccccC--C------ceeEEEEcCCCCEEEEec--------
Q 024868 116 KCLS-FSVDGSRFAAGG-VD----GHLRIMHWPSLRIILDEPKAH--K------SVLDMDFSLDSEFLATTS-------- 173 (261)
Q Consensus 116 ~~~~-~s~~~~~l~~~~-~d----~~i~~~d~~~~~~~~~~~~~~--~------~v~~~~~s~~~~~l~~~~-------- 173 (261)
..+. ++|++++++.+- .. ..++++|+.+++.+....... . ....++|..++.++++..
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~ 211 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITS 211 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCT
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCc
Confidence 4455 888988777642 22 369999999988753222211 1 113457874444444321
Q ss_pred --CCCcEEEEEccCCc--EEEEEeecCCCceEEEEEecCCCcc--eEEEEEe-eCCCcEEEEEECCC
Q 024868 174 --TDGSARIWKTEDGV--AWTFLTRNSDEKIELCRFSKDGTKP--FLFCTVQ-RGDKALLAVYDIST 233 (261)
Q Consensus 174 --~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~--~~~~~~~-~~~d~~i~~~d~~~ 233 (261)
....|+.|.+-+.. -...+.......-.++..++++++. +++.... ......+++.|...
T Consensus 212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 278 (711)
T 4hvt_A 212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKY 278 (711)
T ss_dssp TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSS
T ss_pred CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCC
Confidence 12458888776542 2233433333223345567787763 1211112 23346677777653
No 363
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=65.29 E-value=39 Score=24.96 Aligned_cols=115 Identities=10% Similarity=0.038 Sum_probs=64.3
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccc
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD 98 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~ 98 (261)
...++..+.+| .+.......-...........++. .+.+..+........++..+..|.++.+....-...
T Consensus 80 ~~~~v~~T~~G--------~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~ 150 (276)
T 3no0_A 80 GNRLLLATKKG--------YVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPS 150 (276)
T ss_dssp CSEEEEEETTS--------EEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBC
T ss_pred CCEEEEEeCCC--------EEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCc
Confidence 34667777777 666555433211111222223332 345666666656667888889998888876543221
Q ss_pred cc-eeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEcc
Q 024868 99 IN-LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (261)
Q Consensus 99 ~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 142 (261)
.+ ........+.....|..+...+++..++..+..|.++...+.
T Consensus 151 gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~ 195 (276)
T 3no0_A 151 TPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHE 195 (276)
T ss_dssp CTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGG
T ss_pred CCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHH
Confidence 10 001111223344667666655666678888889988887764
No 364
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=63.83 E-value=51 Score=25.79 Aligned_cols=108 Identities=7% Similarity=-0.022 Sum_probs=57.3
Q ss_pred CCceEEEECCC----CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCC---CCeEEEEEe-eCCcEEEEeccCCe
Q 024868 64 GDPMTIAVNPS----GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA---GPQKCLSFS-VDGSRFAAGGVDGH 135 (261)
Q Consensus 64 ~~v~~~~~~~~----~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s-~~~~~l~~~~~d~~ 135 (261)
..+..++.+|+ ++.|......+ -++|.+.+..............+... ..-..++.. .+|.++++--....
T Consensus 220 ~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~a 298 (381)
T 3q6k_A 220 AGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQ 298 (381)
T ss_dssp CCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSE
T ss_pred cCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCe
Confidence 46889999998 77787766555 45666654321111011111111112 223445665 56777777777888
Q ss_pred EEEEEccC-c----e-EEeeccccCCceeEEEEcCCCCEEEEe
Q 024868 136 LRIMHWPS-L----R-IILDEPKAHKSVLDMDFSLDSEFLATT 172 (261)
Q Consensus 136 i~~~d~~~-~----~-~~~~~~~~~~~v~~~~~s~~~~~l~~~ 172 (261)
|..|+..+ . . .+......-..+..+.+.++|.+.+..
T Consensus 299 I~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 299 VSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 99999765 1 1 111111111245667666666544443
No 365
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=56.03 E-value=65 Score=24.51 Aligned_cols=119 Identities=13% Similarity=0.102 Sum_probs=71.3
Q ss_pred CCceEE-EECC--CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEE
Q 024868 64 GDPMTI-AVNP--SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH 140 (261)
Q Consensus 64 ~~v~~~-~~~~--~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 140 (261)
..|.++ .... +...++..+.+|.++.-.+.......+ .......+.....+..+........|+..+..|.+..+.
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r-~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~ 173 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRS-GGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFS 173 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCS-SCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcccc-CceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence 345444 3432 577899999999999888765432111 011122233345666665555556677777889887776
Q ss_pred cc--Cce---------EEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEcc
Q 024868 141 WP--SLR---------IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184 (261)
Q Consensus 141 ~~--~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~ 184 (261)
.. .-. .... ......|.++...+++..++..+..|.++.-.+.
T Consensus 174 ~~~~eip~~gr~a~Gv~~i~-L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~ 227 (327)
T 3uc1_A 174 ATDEALRPMGRATSGVQGMR-FNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIE 227 (327)
T ss_dssp CCTTTSCCCCTTSBCEESSC-CCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred CcccccCcCCcCCCCeeeec-CCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHH
Confidence 65 211 1111 1223456666665666788888899998888765
No 366
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=55.14 E-value=53 Score=26.77 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=41.3
Q ss_pred CceEEEECC----CCC--eEEEEecCCcEEEEEEeCCccc---cceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCe
Q 024868 65 DPMTIAVNP----SGD--DFVCSTTNGGCKLFEVYGGATD---INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH 135 (261)
Q Consensus 65 ~v~~~~~~~----~~~--~l~~~~~dg~i~i~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 135 (261)
..++|+... +++ .+..|+.+|.|.-.-+...... ......++..+....+|..|.++++..+|++++.++-
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 346665542 233 3567788887755444322110 0111112233334578899999999999999977765
Q ss_pred EEE
Q 024868 136 LRI 138 (261)
Q Consensus 136 i~~ 138 (261)
+++
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 367
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=54.17 E-value=67 Score=24.15 Aligned_cols=163 Identities=12% Similarity=0.096 Sum_probs=86.8
Q ss_pred CCceEEEECCCCCeEEEEecCCcEEEEEEeCCcccc-ceeee---eCCCCCCCCCeEEEEEee---CCcEEEEeccCCeE
Q 024868 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI-NLLAK---KMPPLQDAGPQKCLSFSV---DGSRFAAGGVDGHL 136 (261)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~-~~~~~---~~~~~~~~~~v~~~~~s~---~~~~l~~~~~d~~i 136 (261)
+.+..+......+.++..+..|.++-+....-.... ..... ..-.+.....+..+..-+ +..+++..+..|.+
T Consensus 47 D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~ 126 (312)
T 1suu_A 47 DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKI 126 (312)
T ss_dssp CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEE
T ss_pred CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeE
Confidence 445555554455667777889987777664321100 00000 011233345565554332 45677888899998
Q ss_pred EEEEccCc-------eEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccC----C---cEEEEEeecCCCceEE
Q 024868 137 RIMHWPSL-------RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED----G---VAWTFLTRNSDEKIEL 202 (261)
Q Consensus 137 ~~~d~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~----~---~~~~~~~~~~~~~v~~ 202 (261)
+...+..- .....+.. .+.+-.+....++..++..+.+|.+..+.... + +-+..+....+..+..
T Consensus 127 kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~ 205 (312)
T 1suu_A 127 ARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVK 205 (312)
T ss_dssp EEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEE
T ss_pred EEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEE
Confidence 88876432 22222222 34555555555556677788889988888753 1 1122222222334555
Q ss_pred EEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868 203 CRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (261)
Q Consensus 203 ~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~ 232 (261)
+...+++.. ++..+..|..+..++.
T Consensus 206 ~~~v~~~~~-----l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 206 VLSVKENPY-----LLIVSENGYGKRLNMS 230 (312)
T ss_dssp EEECTTCSE-----EEEEETTSEEEEEEGG
T ss_pred EEEECCCCe-----EEEEECCCceEEEEHH
Confidence 555445554 3445566777777764
No 368
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=53.70 E-value=64 Score=23.77 Aligned_cols=146 Identities=12% Similarity=-0.003 Sum_probs=69.5
Q ss_pred CceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCc
Q 024868 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL 144 (261)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 144 (261)
.|..++...+. .+.-. +|.|+.|-........ ........|..++...+ ..+.-. ||.++.|-....
T Consensus 103 ~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg-------~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~ 169 (282)
T 3qhy_B 103 GVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTT-------VPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYF 169 (282)
T ss_dssp SEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTS-------CCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTT
T ss_pred CeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCC-------CCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCC
Confidence 56666664432 23334 8889999776543211 00111234555544322 222233 788888875432
Q ss_pred eEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCc
Q 024868 145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA 224 (261)
Q Consensus 145 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~ 224 (261)
..+.........|..++...+. .++. .||.++.|-......+- +.......|..++-..... ++.. ||
T Consensus 170 gqlg~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~h~------~al~--~g 237 (282)
T 3qhy_B 170 GQTTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTT-VPTEALSGVSAIASGEWYS------LALK--NG 237 (282)
T ss_dssp STTSCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTC-CCGGGGSSCCEEEECSSCE------EEEE--TT
T ss_pred CCCCCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCC-CCcccCCCceEEEcCCCEE------EEEE--CC
Confidence 2211111112356666654332 2333 58999999765321111 1111112355554332222 1222 78
Q ss_pred EEEEEECCCCe
Q 024868 225 LLAVYDISTWN 235 (261)
Q Consensus 225 ~i~~~d~~~~~ 235 (261)
.++.|-.....
T Consensus 238 ~v~~wG~n~~g 248 (282)
T 3qhy_B 238 KVIAWGSSRTA 248 (282)
T ss_dssp EEEEESTTCCC
T ss_pred EEEEecCCCCc
Confidence 89988765543
No 369
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=51.69 E-value=25 Score=30.18 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=23.8
Q ss_pred eeCCcEEEEeccCCeEEEEEccCceEEee
Q 024868 121 SVDGSRFAAGGVDGHLRIMHWPSLRIILD 149 (261)
Q Consensus 121 s~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 149 (261)
..+..++++-+.|.++++|++++++.+..
T Consensus 228 ~~~~~fLftL~~Dh~LRiWsL~t~~lv~t 256 (729)
T 3f7f_A 228 LFHERYLIVLTQNCHLKIWDLTSFTLIQD 256 (729)
T ss_dssp EETTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred ccCCcEEEEEEcCCeEEEEEcCCCceEEe
Confidence 34577899999999999999999886543
No 370
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=50.44 E-value=89 Score=24.44 Aligned_cols=172 Identities=8% Similarity=-0.018 Sum_probs=90.5
Q ss_pred CceEEEEEcCCCC--ceecCCeEEeeecCC----CCCceEEEEC---CC----CCeEEEEe-cCCcEEEEEEeCCccccc
Q 024868 35 SVLEIFSFDPKTT--SVYTSPLVTYVFDES----EGDPMTIAVN---PS----GDDFVCST-TNGGCKLFEVYGGATDIN 100 (261)
Q Consensus 35 ~~~~i~~~~~~~~--~~~~~~~~~~~~~~~----~~~v~~~~~~---~~----~~~l~~~~-~dg~i~i~~~~~~~~~~~ 100 (261)
..-+|..||..+. ++ .....++.. ...+..+.+. |+ +.++..+. ..+-|.++|+.+++....
T Consensus 121 ~~pkLv~~DL~t~~~~l----i~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv 196 (381)
T 3q6k_A 121 HRPAIVAYDLKQPNYPE----VVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNV 196 (381)
T ss_dssp CCCEEEEEESSSTTCCE----EEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCceEEEEECCCCCcee----EEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEE
Confidence 3458888998887 54 223333321 2346677776 22 23333333 346799999988765221
Q ss_pred eeeeeCCC------------CCCCCCeEEEEEeeC----CcEEEEeccCC-eEEEEE---ccCceE--EeeccccC---C
Q 024868 101 LLAKKMPP------------LQDAGPQKCLSFSVD----GSRFAAGGVDG-HLRIMH---WPSLRI--ILDEPKAH---K 155 (261)
Q Consensus 101 ~~~~~~~~------------~~~~~~v~~~~~s~~----~~~l~~~~~d~-~i~~~d---~~~~~~--~~~~~~~~---~ 155 (261)
....... +.-...+..++++|+ ++.|......+ .++-.. +++... ..+..+.. .
T Consensus 197 -~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s 275 (381)
T 3q6k_A 197 -THPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYN 275 (381)
T ss_dssp -ECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTC
T ss_pred -ccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCC
Confidence 1110000 001247889999997 67777665444 333322 111111 01111111 2
Q ss_pred ceeEEEEc-CCCCEEEEecCCCcEEEEEccCC----cEEEEEe-ecCCCceEEEEEecCCCc
Q 024868 156 SVLDMDFS-LDSEFLATTSTDGSARIWKTEDG----VAWTFLT-RNSDEKIELCRFSKDGTK 211 (261)
Q Consensus 156 ~v~~~~~s-~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~-~~~~~~v~~~~~~p~~~~ 211 (261)
.-..++.. .+|.++++--..+.|..|+..+. +....+. ...-..+..+.+.++|..
T Consensus 276 ~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~L 337 (381)
T 3q6k_A 276 DAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGL 337 (381)
T ss_dssp CEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCE
T ss_pred CcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeE
Confidence 23455665 57887777778899999998751 1222222 222224667777666653
No 371
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=49.75 E-value=84 Score=26.77 Aligned_cols=62 Identities=13% Similarity=0.157 Sum_probs=37.7
Q ss_pred eEEEEecCCcEEE-EEEeCCc--cccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEE
Q 024868 77 DFVCSTTNGGCKL-FEVYGGA--TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI 138 (261)
Q Consensus 77 ~l~~~~~dg~i~i-~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~ 138 (261)
.+..|+.+|.|.- ....... .....+..+...+....+|..|.++++.+.|++++.++-+++
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 4667888887753 3222211 111112223444556678999999999999999977775554
No 372
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=49.16 E-value=1.3e+02 Score=26.00 Aligned_cols=163 Identities=9% Similarity=0.006 Sum_probs=73.3
Q ss_pred CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEE--eeecC---CCCCceEEEECC-CCC
Q 024868 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVT--YVFDE---SEGDPMTIAVNP-SGD 76 (261)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~---~~~~v~~~~~~~-~~~ 76 (261)
+++.|.+++++|.. ...+.++...+ -|+.-+.....+....... ..+.. ....+.++++.| +.+
T Consensus 19 ~~g~i~~i~~~p~~--~~~~y~~~~~g--------gv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~ 88 (763)
T 3a0f_A 19 GGGFISGLVAHPTE--KDLIYARTDIG--------GTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPD 88 (763)
T ss_dssp BCSCEEEEEECSSS--TTCEEEEESSS--------CEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTT
T ss_pred CCCceeEEEeCCCC--CCEEEEEeccC--------cEEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCC
Confidence 56899999998864 33444444444 4665555454441110000 00000 224588999988 344
Q ss_pred eEEEEecC-----CcEEEEEEeCCccccceeeeeCCC---CCCCCCeEEEEEeeC-CcEEEEeccCCeEEEEEccCceEE
Q 024868 77 DFVCSTTN-----GGCKLFEVYGGATDINLLAKKMPP---LQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRII 147 (261)
Q Consensus 77 ~l~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~ 147 (261)
.++++... ....||.-.++....+........ .........++++|. ...++++...+.|.. ..+.++.-
T Consensus 89 ~~~~~~g~~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~-S~DgG~TW 167 (763)
T 3a0f_A 89 RLYLAQGDYVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWR-STDRAQTW 167 (763)
T ss_dssp CEEEEECSCTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEE-ESSTTSSC
T ss_pred EEEEEecccccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEEE-ECCCCcCc
Confidence 44443321 124566555543323222211100 001111245888874 344555544443332 22222221
Q ss_pred eecc---cc---CCceeEEEEcCC-CCEEEEecCCC
Q 024868 148 LDEP---KA---HKSVLDMDFSLD-SEFLATTSTDG 176 (261)
Q Consensus 148 ~~~~---~~---~~~v~~~~~s~~-~~~l~~~~~d~ 176 (261)
.... .. ...+..+.++|. ...++.+..++
T Consensus 168 ~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 168 SRMNQLPDSSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp EECTTSCCCSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred cccccCcccCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 1111 11 124778889884 34455554444
No 373
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=49.12 E-value=60 Score=26.78 Aligned_cols=70 Identities=7% Similarity=-0.041 Sum_probs=38.5
Q ss_pred eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCce-EEEECCCCCeEEEEecCC
Q 024868 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPM-TIAVNPSGDDFVCSTTNG 85 (261)
Q Consensus 7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg 85 (261)
.+.++-.... +..++.+|..+| +|..+................+.....+|. .+.+++++..|.+++.++
T Consensus 402 lT~vav~~~~-~~tV~flGT~~G--------~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~ 472 (539)
T 3al9_A 402 LTSVASYVYN-GYSVVFVGTKSG--------KLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQ 472 (539)
T ss_dssp EEEEEEEEET-TEEEEEEEETTS--------EEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSE
T ss_pred eEEEEeeccC-CeEEEEEEcCCC--------eEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEeccc
Confidence 4455554432 345666888888 665543322110000111222333345775 899999999998887665
No 374
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=49.04 E-value=73 Score=25.94 Aligned_cols=67 Identities=15% Similarity=0.121 Sum_probs=40.2
Q ss_pred CeEEEEEeeC----Cc--EEEEeccCCeEEEEEcc-Cce-------EE--eeccccCCceeEEEEcCCCCEEEEecCCCc
Q 024868 114 PQKCLSFSVD----GS--RFAAGGVDGHLRIMHWP-SLR-------II--LDEPKAHKSVLDMDFSLDSEFLATTSTDGS 177 (261)
Q Consensus 114 ~v~~~~~s~~----~~--~l~~~~~d~~i~~~d~~-~~~-------~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 177 (261)
..+.++...- +. .++.|..+|.|.-.-+. .+. .+ ........+|..|.++++..+|+.++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 3466665542 33 46667788876544332 211 11 122223468999999999999999988775
Q ss_pred EEE
Q 024868 178 ARI 180 (261)
Q Consensus 178 i~i 180 (261)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 375
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=47.91 E-value=1.3e+02 Score=25.77 Aligned_cols=208 Identities=10% Similarity=0.026 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCceecCCeEEeeecCCC-----CCceEEEECCCCCeEEEEec-----------CCcEEEEEEeCCccccc
Q 024868 37 LEIFSFDPKTTSVYTSPLVTYVFDESE-----GDPMTIAVNPSGDDFVCSTT-----------NGGCKLFEVYGGATDIN 100 (261)
Q Consensus 37 ~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~-----------dg~i~i~~~~~~~~~~~ 100 (261)
..+.++|..++++....+. -. ... .....++|. |.+.++.+.. ..+++.|.+.+......
T Consensus 156 ~~~~~~d~~t~~~~~~~~~-~~--~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~ 231 (711)
T 4hvt_A 156 MFFREWDLEKKDFVKNGFE-PI--TNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAK 231 (711)
T ss_dssp EEEEEEETTTTEECTTCSC-CB--CTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCE
T ss_pred eEEEEEECCcCCcCCCCcc-cc--cccccccccccceeeEE-CCCEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCe
Confidence 3788999998876332211 00 001 012344675 3334443321 24577777765543222
Q ss_pred eeeeeCCCCCCCCCeEEEEEeeCCcE-----EEEec---cCCeEEEEEccC--ceEEeeccccCCceeEEEEcCCCCEEE
Q 024868 101 LLAKKMPPLQDAGPQKCLSFSVDGSR-----FAAGG---VDGHLRIMHWPS--LRIILDEPKAHKSVLDMDFSLDSEFLA 170 (261)
Q Consensus 101 ~~~~~~~~~~~~~~v~~~~~s~~~~~-----l~~~~---~d~~i~~~d~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~ 170 (261)
.+-... ......+...++++++ +++.+ ....+++.+... ++. ..+..... ..+..+.++.+++
T Consensus 232 ~v~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~--~~~~~~~~~~~~~ 304 (711)
T 4hvt_A 232 KLFEVP----KEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMPSD--ATLQGSFKEYVFW 304 (711)
T ss_dssp EEEECC----TTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSCTT--CEEEEEETTEEEE
T ss_pred EEeccC----CCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecCCc--ceEeeeECCEEEE
Confidence 221111 1112234445566652 34332 224566666543 332 22222222 1233455666655
Q ss_pred Eec----------CCCcEEEEEccCCc-------EEEE-EeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868 171 TTS----------TDGSARIWKTEDGV-------AWTF-LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (261)
Q Consensus 171 ~~~----------~d~~i~iwd~~~~~-------~~~~-~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~ 232 (261)
... ..+.|...|+.++. .... +.......+..+.|..+ .+++ ...-.....+.++|+.
T Consensus 305 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~l~~--~~~~~~~~~l~~~~~~ 380 (711)
T 4hvt_A 305 LLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD--RVFL--ATYDNVVAKVVTFTLE 380 (711)
T ss_dssp ECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS--CEEE--EEEETTEEEEEEECEE
T ss_pred EECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC--EEEE--EEEECCEEEEEEEECC
Confidence 331 35779999987642 2222 43333445777888765 3221 2222333468888877
Q ss_pred CCe-EEee-eecc-CcCeeEEEEeeCCCEE
Q 024868 233 TWN-KIGH-KRLL-RKPASVLSISLDGKYL 259 (261)
Q Consensus 233 ~~~-~~~~-~~~~-~~~v~~~~~s~dg~~l 259 (261)
+++ .... +... .+.+....+++++..+
T Consensus 381 ~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~ 410 (711)
T 4hvt_A 381 NEQWTKPVVLKLPYQNAIFGMSSYEEEEEA 410 (711)
T ss_dssp TTEECCCEEECCCSTTCEEEEECCTTCSCE
T ss_pred CCceEEEeccCCCCCeEEEEEeecCcCCEE
Confidence 664 2222 2222 2455556666666544
No 376
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=45.78 E-value=96 Score=23.50 Aligned_cols=163 Identities=9% Similarity=0.011 Sum_probs=83.7
Q ss_pred CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccc-eeee---eCCCCCCCCCeEEEEEee---CCcEEEEeccCCeE
Q 024868 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN-LLAK---KMPPLQDAGPQKCLSFSV---DGSRFAAGGVDGHL 136 (261)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-~~~~---~~~~~~~~~~v~~~~~s~---~~~~l~~~~~d~~i 136 (261)
+.+..+........|+..+..|.++-+....-..... .... ..-.+.....|..+..-+ ++.+++..+..|.+
T Consensus 39 D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~i 118 (323)
T 1wp5_A 39 DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMV 118 (323)
T ss_dssp CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEE
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeE
Confidence 3444444444556677777888777666543211000 0000 111233345565543333 25678888899999
Q ss_pred EEEEccC--------ceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccC-------CcEEEEEeecCCCceE
Q 024868 137 RIMHWPS--------LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-------GVAWTFLTRNSDEKIE 201 (261)
Q Consensus 137 ~~~d~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~-------~~~~~~~~~~~~~~v~ 201 (261)
+--.+.. +.....+.. .+.+-.+........++..+.+|.+..+.... .+-++-+....+..|.
T Consensus 119 Krt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv 197 (323)
T 1wp5_A 119 KKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIV 197 (323)
T ss_dssp EEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEE
T ss_pred EEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEE
Confidence 9887642 111112222 24555555544555677777889888887652 1112222222233455
Q ss_pred EEEEecCCC-cceEEEEEeeCCCcEEEEEECC
Q 024868 202 LCRFSKDGT-KPFLFCTVQRGDKALLAVYDIS 232 (261)
Q Consensus 202 ~~~~~p~~~-~~~~~~~~~~~~d~~i~~~d~~ 232 (261)
++...+++. . ++..+..|..+..++.
T Consensus 198 ~~~~~~~~~~~-----ll~vt~~G~gKr~~~~ 224 (323)
T 1wp5_A 198 SGQLITSKDES-----IVVATQRGAVKKMKLT 224 (323)
T ss_dssp EEEEECCTTCE-----EEEEETTSEEEEEEGG
T ss_pred EEEEEcCCCcE-----EEEEECCCceEEEEHH
Confidence 654444444 3 2444556666666653
No 377
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=45.29 E-value=81 Score=26.02 Aligned_cols=73 Identities=14% Similarity=0.100 Sum_probs=42.3
Q ss_pred CceEEEECCCC--CeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeE-EEEEeeCCcEEEEeccCCeEEE
Q 024868 65 DPMTIAVNPSG--DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK-CLSFSVDGSRFAAGGVDGHLRI 138 (261)
Q Consensus 65 ~v~~~~~~~~~--~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~d~~i~~ 138 (261)
..++++....+ ..+..|..+|.|.-..+.......... ..........+|. .|.++++..+|++++.++-+++
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~-e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQY-EMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEE-EEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeE-EEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 45666665433 346678889988766665332110111 1222233345774 8999999889988866554443
No 378
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=45.26 E-value=1.5e+02 Score=25.51 Aligned_cols=111 Identities=11% Similarity=0.082 Sum_probs=57.6
Q ss_pred ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecC------CCCCceEEEECC-CCCe
Q 024868 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE------SEGDPMTIAVNP-SGDD 77 (261)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~-~~~~ 77 (261)
+.|..++++|.. ...+.++...+ .+|..+.....+ ...... ....|.+++++| +.+.
T Consensus 23 g~i~~i~~~p~~--~~~~~~~~~~g--------gv~rS~D~G~tW------~~i~~~~~~~~~~~~~i~~i~~dp~~~~~ 86 (737)
T 2cn3_A 23 GFMPGIVFNETE--KDLIYARAAIG--------GAYRWDPSTETW------IPLLDHFQMDEYSYYGVESIATDPVDPNR 86 (737)
T ss_dssp SCCCEEEECSSS--TTCEEEECSSS--------CEEEEETTTTEE------EECCTTCCGGGGGGGCEEEEEECSSSTTC
T ss_pred ceeeEEEECCCC--CCEEEEEecCC--------cEEEeCCCCCCE------EECcCccCcccccCCCcceEEeCCCCCCE
Confidence 489999998863 23344454444 577777666555 211111 023588999998 4444
Q ss_pred EEEEecC-------CcEEEEEEeCCccccceeeeeCCC---CCCCCCeEEEEEeeC-CcEEEEec
Q 024868 78 FVCSTTN-------GGCKLFEVYGGATDINLLAKKMPP---LQDAGPQKCLSFSVD-GSRFAAGG 131 (261)
Q Consensus 78 l~~~~~d-------g~i~i~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~-~~~l~~~~ 131 (261)
++++... +...+|.-.++....+........ ......+..++++|. ...++.+.
T Consensus 87 v~v~~~~~~~~~~~~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~ 151 (737)
T 2cn3_A 87 VYIVAGMYTNDWLPNMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT 151 (737)
T ss_dssp EEEEECSCSSSSSCCCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC
T ss_pred EEEEecccccccccCCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEee
Confidence 5444321 135677665554333322211110 111123467889884 45566664
No 379
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=42.42 E-value=58 Score=20.05 Aligned_cols=10 Identities=20% Similarity=0.458 Sum_probs=5.9
Q ss_pred EEEEecCCCc
Q 024868 202 LCRFSKDGTK 211 (261)
Q Consensus 202 ~~~~~p~~~~ 211 (261)
.+.+..+|..
T Consensus 60 ~l~l~~dGNL 69 (113)
T 3mez_B 60 FMRLGHSGEL 69 (113)
T ss_dssp EEEECTTSCE
T ss_pred EEEEeCCCcE
Confidence 4556666664
No 380
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=41.45 E-value=1e+02 Score=25.74 Aligned_cols=55 Identities=11% Similarity=0.110 Sum_probs=34.0
Q ss_pred EEEEeccCCeEEEEEccC-c----eE-Ee--eccccCCceeEEEEcCCCCEEEEecCCCcEEE
Q 024868 126 RFAAGGVDGHLRIMHWPS-L----RI-IL--DEPKAHKSVLDMDFSLDSEFLATTSTDGSARI 180 (261)
Q Consensus 126 ~l~~~~~d~~i~~~d~~~-~----~~-~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i 180 (261)
.++.|+.+|.|.-.-+.. + .. +. .......+|..+.++++...|+.++.++.++|
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 456677888765433322 2 11 11 12233457899999999999998887765554
No 381
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=40.64 E-value=1.2e+02 Score=23.28 Aligned_cols=223 Identities=6% Similarity=-0.108 Sum_probs=0.0
Q ss_pred CcceEEEEecCCCCCCCCCceEEEEEcCCC--CceecCCeEEee-ecCCCCCceEEEECC-CCCeEEEEecCC----cEE
Q 024868 17 ENVNLVVLGKSSRASSSPSVLEIFSFDPKT--TSVYTSPLVTYV-FDESEGDPMTIAVNP-SGDDFVCSTTNG----GCK 88 (261)
Q Consensus 17 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~dg----~i~ 88 (261)
+....+.+|...+ ++.++... ..+ ... .......|.++++.| +...|.++...| .|.
T Consensus 20 d~~g~l~vgt~~G---------l~~~~~~~~g~~W------~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~ 84 (394)
T 3b7f_A 20 SGPVMLLVATIKG---------AWFLASDPARRTW------ELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVF 84 (394)
T ss_dssp CSCCEEEEEETTE---------EEEEEECTTSCSE------EEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEE
T ss_pred CCCCEEEEEecCc---------eEEEECCCCCCCc------eECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEE
Q ss_pred EEEEeCCccccceeeeeCCCCC------CCCCeEEEEEee-C-CcEEEEeccCCeEEEEEccCceEEeeccc--------
Q 024868 89 LFEVYGGATDINLLAKKMPPLQ------DAGPQKCLSFSV-D-GSRFAAGGVDGHLRIMHWPSLRIILDEPK-------- 152 (261)
Q Consensus 89 i~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~s~-~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-------- 152 (261)
..+-....-............. ....|.++++.| + ...+.++...+.|...+ ..++.-.....
T Consensus 85 ~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~ 163 (394)
T 3b7f_A 85 RSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRR 163 (394)
T ss_dssp EESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHH
T ss_pred EeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCcccc
Q ss_pred -----------cCCceeEEEEcC-CCCEEEEecCCCcEEEEEccCCcEEEEEeecCC-----------CceEEEEEecCC
Q 024868 153 -----------AHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-----------EKIELCRFSKDG 209 (261)
Q Consensus 153 -----------~~~~v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----------~~v~~~~~~p~~ 209 (261)
....+.++.++| +...++.+..++.+...+-....-......... ..+..+.++|+.
T Consensus 164 ~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~ 243 (394)
T 3b7f_A 164 AWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAA 243 (394)
T ss_dssp HHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSS
T ss_pred ccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCC
Q ss_pred CcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCc----CeeEEEEe--eCCCEEe
Q 024868 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK----PASVLSIS--LDGKYLA 260 (261)
Q Consensus 210 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~v~~~~~s--~dg~~la 260 (261)
.. .+-.+..+.|+..+-....-......... .+..++++ ..+...+
T Consensus 244 ~~-----~l~vg~~~gl~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~ 295 (394)
T 3b7f_A 244 PD-----ILYQQNHCGIYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWV 295 (394)
T ss_dssp TT-----EEEEEETTEEEEEETTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEE
T ss_pred CC-----EEEEEcCCeEEEeCCCCCcceECCCCCCCCCccceEEEEECCCCCCEEEE
No 382
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=39.90 E-value=1.4e+02 Score=24.96 Aligned_cols=62 Identities=10% Similarity=0.122 Sum_probs=36.8
Q ss_pred eEEEEecCCcEEEEEEeCCc-cccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEE
Q 024868 77 DFVCSTTNGGCKLFEVYGGA-TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI 138 (261)
Q Consensus 77 ~l~~~~~dg~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~ 138 (261)
.+..|+.+|.|.-.-+.... ........+...+....+|..+.++++...|++++.++.+++
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 45677888887644333222 100111122333344578899999999888888876665544
No 383
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=39.21 E-value=1.9e+02 Score=25.10 Aligned_cols=141 Identities=13% Similarity=0.094 Sum_probs=65.9
Q ss_pred CCCceEEEECCC-CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCC----CCCCeEEEEEeeC-CcEEEEeccCCe-
Q 024868 63 EGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ----DAGPQKCLSFSVD-GSRFAAGGVDGH- 135 (261)
Q Consensus 63 ~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~-~~~l~~~~~d~~- 135 (261)
.+.|.+|+++|. ...++++...+.| |...++......+ ..... ....+.+++++|. ...++++..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv--~rS~DgG~tW~~~---~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~ 88 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGA--YRWDAGTSKWIPL---NDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVG 88 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCE--EEEETTTTEEEES---CTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTT
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCE--EEecCCCCCeeEC---ccCCCcccccCCceeEEEECCCCCCEEEEEeCccCC
Confidence 467999999985 4556666666654 4443333212211 11010 1246899999984 334444322211
Q ss_pred ---EEEEEcc-CceEEeecc---c------cCCceeEEEEcCC-CCEEEEecCCCcEEEEEcc-CCcEEEEEee-----c
Q 024868 136 ---LRIMHWP-SLRIILDEP---K------AHKSVLDMDFSLD-SEFLATTSTDGSARIWKTE-DGVAWTFLTR-----N 195 (261)
Q Consensus 136 ---i~~~d~~-~~~~~~~~~---~------~~~~v~~~~~s~~-~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~-----~ 195 (261)
-.||--. .++.-.... . ....+..++++|. ...++.+...+. ||-.. .|+--..+.. .
T Consensus 89 ~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~~~~ 166 (789)
T 1sqj_A 89 DEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPDAFT 166 (789)
T ss_dssp SSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSCCCCS
T ss_pred CcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCccccC
Confidence 2333322 232211111 0 0113567888874 455666653433 33332 2332222221 0
Q ss_pred CCCceEEEEEecCCC
Q 024868 196 SDEKIELCRFSKDGT 210 (261)
Q Consensus 196 ~~~~v~~~~~~p~~~ 210 (261)
....+..+.++|...
T Consensus 167 ~~~~~~~i~~~p~~~ 181 (789)
T 1sqj_A 167 NGIGYTSVIFDPERN 181 (789)
T ss_dssp TTTCEEEEEECTTST
T ss_pred CCCCeEEEEECCCCC
Confidence 113478888988543
No 384
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=36.86 E-value=2.3e+02 Score=25.34 Aligned_cols=37 Identities=8% Similarity=0.082 Sum_probs=31.0
Q ss_pred CCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee
Q 024868 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD 149 (261)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 149 (261)
..+.++...++..++++-+.|+++++|++.+++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence 4567777778888999999999999999999887654
No 385
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=36.77 E-value=1.4e+02 Score=25.50 Aligned_cols=55 Identities=18% Similarity=0.255 Sum_probs=34.6
Q ss_pred EEEEeccCCeEE-EEEccCce-------EE--eeccccCCceeEEEEcCCCCEEEEecCCCcEEE
Q 024868 126 RFAAGGVDGHLR-IMHWPSLR-------II--LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI 180 (261)
Q Consensus 126 ~l~~~~~d~~i~-~~d~~~~~-------~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i 180 (261)
.++.|+.+|.|. +....... .+ ........+|..|.++++.++|+.++.++.++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 466777888764 32222111 11 122344567999999999999999988776555
No 386
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=35.33 E-value=77 Score=19.35 Aligned_cols=10 Identities=30% Similarity=0.375 Sum_probs=5.4
Q ss_pred EEEEeeCCCE
Q 024868 249 VLSISLDGKY 258 (261)
Q Consensus 249 ~~~~s~dg~~ 258 (261)
.+.+.+||.+
T Consensus 86 ~l~l~~dGnl 95 (110)
T 3a0c_A 86 VLVLQQDRNV 95 (110)
T ss_dssp EEEECTTSCE
T ss_pred EEEEeCCccE
Confidence 4555555554
No 387
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=30.96 E-value=98 Score=19.25 Aligned_cols=9 Identities=33% Similarity=0.431 Sum_probs=4.5
Q ss_pred EEEEeeCCC
Q 024868 249 VLSISLDGK 257 (261)
Q Consensus 249 ~~~~s~dg~ 257 (261)
.+.+.++|.
T Consensus 96 ~l~l~~~Gn 104 (119)
T 1b2p_A 96 VLVLQPDRN 104 (119)
T ss_dssp EEEECTTSC
T ss_pred EEEEECCCc
Confidence 444555554
No 388
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=30.73 E-value=2.4e+02 Score=24.00 Aligned_cols=71 Identities=21% Similarity=0.212 Sum_probs=42.3
Q ss_pred CceEEEEC----CCCC---eEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC--cEEEEeccCCe
Q 024868 65 DPMTIAVN----PSGD---DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG--SRFAAGGVDGH 135 (261)
Q Consensus 65 ~v~~~~~~----~~~~---~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~d~~ 135 (261)
..+.|+.. .+++ .+..|+.+|.|.-.-...... . ...+...+....+|..|.++++. ..|++++..+-
T Consensus 398 ~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~--~-~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V 474 (663)
T 1olz_A 398 NYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAV--H-IIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGV 474 (663)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSE--E-EEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCE
T ss_pred ceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCc--e-EEEEecccCCCCcceeeEeccCCCccEEEEEEcCeE
Confidence 35666652 3443 567788889775443322221 1 11223344455788899999987 88888866664
Q ss_pred EEE
Q 024868 136 LRI 138 (261)
Q Consensus 136 i~~ 138 (261)
+++
T Consensus 475 ~~v 477 (663)
T 1olz_A 475 VQA 477 (663)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 389
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=30.19 E-value=97 Score=18.96 Aligned_cols=11 Identities=9% Similarity=0.099 Sum_probs=5.5
Q ss_pred EEEEeeCCCEE
Q 024868 249 VLSISLDGKYL 259 (261)
Q Consensus 249 ~~~~s~dg~~l 259 (261)
.+.+.+||.++
T Consensus 88 ~l~Lq~dGNlv 98 (111)
T 3mez_A 88 AATLGPDQHVT 98 (111)
T ss_dssp EEEECTTSCEE
T ss_pred EEEECCCCeEE
Confidence 34455555543
No 390
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=30.00 E-value=98 Score=18.98 Aligned_cols=59 Identities=10% Similarity=0.017 Sum_probs=28.9
Q ss_pred CcEEEEeccCCeEEEEEccCceEEeeccccC-CceeEEEEcCCCCEEEEecCCCcEEEEEcc
Q 024868 124 GSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKTE 184 (261)
Q Consensus 124 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~ 184 (261)
+++.+.-..||.+.+|+...+..+....... ..-..+.+..+|++++... ++.+ +|...
T Consensus 24 g~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d~-~~~~-iW~S~ 83 (113)
T 3mez_B 24 RDYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITDD-RLNT-VFVSN 83 (113)
T ss_dssp TTEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEECT-TSCE-EEECS
T ss_pred CCEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEECC-CCCE-EEECC
Confidence 4455555566666666643233333322211 1224566777777666543 3332 56543
No 391
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=27.68 E-value=1.9e+02 Score=21.58 Aligned_cols=83 Identities=7% Similarity=0.015 Sum_probs=47.3
Q ss_pred ecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccc-eeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEE
Q 024868 59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN-LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR 137 (261)
Q Consensus 59 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 137 (261)
+..+ +.+..+....+...++..+.+|.+..+....-....+ ........+.....|.++...+++..+++.+..|..+
T Consensus 142 l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~K 220 (307)
T 1zi0_A 142 LVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGK 220 (307)
T ss_dssp CCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEE
T ss_pred ECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceE
Confidence 4444 5555555544555677778899888887754322111 0011112233445676665555556677777888888
Q ss_pred EEEcc
Q 024868 138 IMHWP 142 (261)
Q Consensus 138 ~~d~~ 142 (261)
-.++.
T Consensus 221 r~~~~ 225 (307)
T 1zi0_A 221 RTAVA 225 (307)
T ss_dssp EECGG
T ss_pred EEEHH
Confidence 77663
No 392
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=26.88 E-value=2.1e+02 Score=21.67 Aligned_cols=79 Identities=10% Similarity=0.032 Sum_probs=45.3
Q ss_pred CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccc-eeeeeCCCCCCCCCeEEEEEeeCCc-EEEEeccCCeEEEEEc
Q 024868 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN-LLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHW 141 (261)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~~d~ 141 (261)
+.+..+......+.++..+.+|.+..+....-....+ ........+.....|.++..-+++. .+++.+..|..+..++
T Consensus 144 d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~ 223 (323)
T 1wp5_A 144 DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKL 223 (323)
T ss_dssp CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEG
T ss_pred CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEH
Confidence 5555555555555677788999888888764322111 0111122233345666665544444 6777778888777766
Q ss_pred c
Q 024868 142 P 142 (261)
Q Consensus 142 ~ 142 (261)
.
T Consensus 224 ~ 224 (323)
T 1wp5_A 224 T 224 (323)
T ss_dssp G
T ss_pred H
Confidence 4
No 393
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=26.17 E-value=2.5e+02 Score=23.43 Aligned_cols=73 Identities=11% Similarity=0.052 Sum_probs=40.8
Q ss_pred ceEEEECC----CC--CeEEEEecCCcEEEEEEeCCc---cccceeeeeCCCCC---------CCCCeEEEEEeeCCcEE
Q 024868 66 PMTIAVNP----SG--DDFVCSTTNGGCKLFEVYGGA---TDINLLAKKMPPLQ---------DAGPQKCLSFSVDGSRF 127 (261)
Q Consensus 66 v~~~~~~~----~~--~~l~~~~~dg~i~i~~~~~~~---~~~~~~~~~~~~~~---------~~~~v~~~~~s~~~~~l 127 (261)
.+.|++.. ++ ..+..|+.+|.|.-.-+.... .....+..+...+. ...+|..+.++++...|
T Consensus 405 lT~IaVd~~~g~~~~ytVlFLGTd~G~l~Kvv~~~~~~~~~~~~~~iEEi~vf~~~~~~~~~~~~~pI~~L~ls~~~~~L 484 (565)
T 3oky_B 405 LTKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRIMGMQLDRASGSL 484 (565)
T ss_dssp EEEEEEEEEETTTTCEEEEEEEETTSEEEEEEECC-----CCCCEEEEEEECCCHHHHCBTTBCCCCCCEEEEEGGGTEE
T ss_pred eEEEEEEEEecCCCceEEEEEECCCCeEEEEEecCCCCccccccEEEEEEEEeccccccccccCCCceEEEEEcCCCCEE
Confidence 46676653 22 346678888987543332211 00111111122221 14578899999998899
Q ss_pred EEeccCCeEEE
Q 024868 128 AAGGVDGHLRI 138 (261)
Q Consensus 128 ~~~~~d~~i~~ 138 (261)
++++.++.+++
T Consensus 485 YV~s~~~V~qV 495 (565)
T 3oky_B 485 YVAFSTCVIKV 495 (565)
T ss_dssp EEECSSCEEEE
T ss_pred EEEecCeEEEe
Confidence 88877776665
No 394
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=25.37 E-value=3.3e+02 Score=23.50 Aligned_cols=74 Identities=12% Similarity=0.193 Sum_probs=46.0
Q ss_pred CCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCc-------eEEeeccccCCceeEEEEc-CCCCEEEEecCCCcEEEEE
Q 024868 111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-------RIILDEPKAHKSVLDMDFS-LDSEFLATTSTDGSARIWK 182 (261)
Q Consensus 111 ~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-------~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d~~i~iwd 182 (261)
....|..+---.+..+++.++..|.++.-.+..- .....+. ....+..+... ..+..++..+.+|....|+
T Consensus 552 ~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~L~-~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~ 630 (716)
T 1zvu_A 552 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-ENAHVMPPVVIEDASDMLLAITQAGRMLMFP 630 (716)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCC-TTCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCeEEEEEEecCCceEEEEeCCceEEEecHHHhcccCccceEEEeeC-CCCEEEEEEEecCCCCEEEEEeCCCeEEEEE
Confidence 3456666644446778888889999998876432 2222222 23344444444 3455677888889988898
Q ss_pred ccC
Q 024868 183 TED 185 (261)
Q Consensus 183 ~~~ 185 (261)
...
T Consensus 631 ~~~ 633 (716)
T 1zvu_A 631 VSD 633 (716)
T ss_dssp STT
T ss_pred HHH
Confidence 754
No 395
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=24.31 E-value=3.3e+02 Score=23.19 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=40.7
Q ss_pred CeEEEEEee----CCc---EEEEeccCCeEEEE-EccCceEEe---eccccCCceeEEEEcCCC--CEEEEecCCCcEEE
Q 024868 114 PQKCLSFSV----DGS---RFAAGGVDGHLRIM-HWPSLRIIL---DEPKAHKSVLDMDFSLDS--EFLATTSTDGSARI 180 (261)
Q Consensus 114 ~v~~~~~s~----~~~---~l~~~~~d~~i~~~-d~~~~~~~~---~~~~~~~~v~~~~~s~~~--~~l~~~~~d~~i~i 180 (261)
..+.++... +++ .++.|..+|.|.-. .......+. .......+|..|.++++. .+|+.++.++.++|
T Consensus 398 ~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 398 NYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred ceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 345666532 332 56677788876433 333322211 122334588899999987 89999888776655
No 396
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=24.30 E-value=2.1e+02 Score=20.93 Aligned_cols=106 Identities=12% Similarity=0.038 Sum_probs=53.0
Q ss_pred CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC
Q 024868 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (261)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 143 (261)
..|..++...+.. ++ -. ||.++.|-......... +......|..++-..+ ..++. .+|.++.|=...
T Consensus 141 ~~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~~gqlg~-------p~~~~~~v~~i~~G~~-hs~al--~~G~v~~wG~n~ 207 (282)
T 3qhy_B 141 SGVTALDGGVYTA-LA-VK-NGGVIAWGDNYFGQTTV-------PAEAQSGVDDVAGGIF-HSLAL--KDGKVIAWGDNR 207 (282)
T ss_dssp SSEEEEEECSSEE-EE-EE-TTEEEEEECCTTSTTSC-------CGGGGSSEEEEEECSS-EEEEE--ETTEEEEEECCT
T ss_pred CCeEEEEcccCEE-EE-EE-CCEEEEecCCCCCCCCC-------ceecCCCeEEEEecCC-EEEEE--ECCeEEEEECCC
Confidence 3466666543322 22 23 78899997765432110 0011235666554432 22333 599999997544
Q ss_pred ceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccC
Q 024868 144 LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED 185 (261)
Q Consensus 144 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~ 185 (261)
...+-........|..++...... ++. . |+.++.|-...
T Consensus 208 ~gqlg~p~~~~~~v~~i~~G~~h~-~al-~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 208 YKQTTVPTEALSGVSAIASGEWYS-LAL-K-NGKVIAWGSSR 246 (282)
T ss_dssp TSTTCCCGGGGSSCCEEEECSSCE-EEE-E-TTEEEEESTTC
T ss_pred CCCCCCCcccCCCceEEEcCCCEE-EEE-E-CCEEEEecCCC
Confidence 322111111123566676544332 333 3 88888886554
No 397
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=24.13 E-value=2.3e+02 Score=21.23 Aligned_cols=80 Identities=6% Similarity=-0.005 Sum_probs=47.3
Q ss_pred CCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccc-eeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEc
Q 024868 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN-LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (261)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~ 141 (261)
.+.+..+....+...++..+.+|.+..+....-....+ ........+.....+..+..-.++..+++.+..|.....++
T Consensus 150 ~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~ 229 (312)
T 1suu_A 150 KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNM 229 (312)
T ss_dssp TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEG
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEH
Confidence 45566555555556677888999998888865322111 01111222333456666655445566777778888888876
Q ss_pred c
Q 024868 142 P 142 (261)
Q Consensus 142 ~ 142 (261)
.
T Consensus 230 ~ 230 (312)
T 1suu_A 230 S 230 (312)
T ss_dssp G
T ss_pred H
Confidence 4
No 398
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=23.72 E-value=2.5e+02 Score=21.61 Aligned_cols=114 Identities=11% Similarity=0.043 Sum_probs=56.7
Q ss_pred ceEEEECCCCCeEEEEecCCcEEEEEEeCCccc------cceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEE
Q 024868 66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD------INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (261)
Q Consensus 66 v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~ 139 (261)
+..++. -....+.-..||+|+.|-....... ..........+ ....+..++.+.-....++...||.|+.|
T Consensus 55 i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~-~~~~~~~v~i~~G~~h~~al~~~G~v~~w 131 (389)
T 3kci_A 55 PVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGKHCLALSSEGEVYSW 131 (389)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGG-TTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred eEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccc-cCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence 444443 2334445567888999876432210 00011111111 12344555666555555566689999999
Q ss_pred EccCc-----------eEEeeccccC-CceeEEEEcCCCCEEEEecCCCcEEEEEcc
Q 024868 140 HWPSL-----------RIILDEPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKTE 184 (261)
Q Consensus 140 d~~~~-----------~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~ 184 (261)
-.... .....+.... ..|..++.. ..+.+....+|.|+.|-..
T Consensus 132 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n 186 (389)
T 3kci_A 132 GEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKG 186 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECC
T ss_pred eCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCC
Confidence 54321 1111111111 145555443 4455555678999999753
No 399
>3kvp_A Uncharacterized protein YMZC; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus subtilis}
Probab=21.75 E-value=70 Score=17.75 Aligned_cols=15 Identities=13% Similarity=0.521 Sum_probs=12.2
Q ss_pred CceEEEEEcCCCCce
Q 024868 35 SVLEIFSFDPKTTSV 49 (261)
Q Consensus 35 ~~~~i~~~~~~~~~~ 49 (261)
+.++|+.||+++..+
T Consensus 38 g~iKIykyde~tNeI 52 (72)
T 3kvp_A 38 GYIKIYEYNESRNEV 52 (72)
T ss_dssp TEEEEEEEETTTTEE
T ss_pred CEEEEEEeCCCCCeE
Confidence 346999999998875
No 400
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=21.21 E-value=1.5e+02 Score=17.96 Aligned_cols=11 Identities=18% Similarity=0.214 Sum_probs=5.6
Q ss_pred EEEEeeCCCEE
Q 024868 249 VLSISLDGKYL 259 (261)
Q Consensus 249 ~~~~s~dg~~l 259 (261)
.+.+.+||.++
T Consensus 85 ~~~L~ddGNlv 95 (109)
T 3dzw_A 85 VCVLQKDRNVV 95 (109)
T ss_dssp EEEECTTSCEE
T ss_pred EEEEeCCCEEE
Confidence 34455555544
No 401
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=20.97 E-value=1.5e+02 Score=17.89 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=26.4
Q ss_pred CcEEEEeccCCeEEEEEccCceEEeeccccC--CceeEEEEcCCCCEEEEecCCCcEEEEEc
Q 024868 124 GSRFAAGGVDGHLRIMHWPSLRIILDEPKAH--KSVLDMDFSLDSEFLATTSTDGSARIWKT 183 (261)
Q Consensus 124 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~d~~i~iwd~ 183 (261)
|++-+.-..||.+.+|+- ...+....... .....+.+..||++++.... +. .+|..
T Consensus 19 g~y~l~~q~DgNLvly~~--~~~vW~ant~~~~~~~~~L~l~~dGnLvL~d~~-~~-~vWss 76 (105)
T 4h3o_A 19 EPYHFIMQDDCNLVLYDH--STSTWASNTEIGGKSGCSAVLQSDGNFVVYDSS-GR-SLWAS 76 (105)
T ss_dssp TTEEEEECTTSCEEEEET--TEEEEECCCCCTTCCSCEEEECTTSCEEEECTT-CC-EEEEC
T ss_pred CCEEEEECCCCeEEEEEC--CEEEEEecCCCCCCccEEEEEeCCccEEEECCC-cE-EEEEe
Confidence 444444456666666652 22333222111 12235677777776665332 22 35654
No 402
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=20.90 E-value=2.8e+02 Score=23.72 Aligned_cols=62 Identities=6% Similarity=-0.045 Sum_probs=33.5
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCc-eEEEECCCCCeEEEEecCCcEE
Q 024868 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDP-MTIAVNPSGDDFVCSTTNGGCK 88 (261)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~ 88 (261)
..++..|..+| +|...-...............+.....+| ..+.++++...|..++.++.++
T Consensus 412 ~tVlFLGT~~G--------~l~Kv~~~~~~~~~~~~ee~~v~~~~~pI~~~l~l~~~~~~Lyv~s~~~V~q 474 (681)
T 3oky_A 412 YSVVFVGTKSG--------KLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTR 474 (681)
T ss_dssp EEEEEEEBTTS--------EEEEEECCCTTTCCEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEE
T ss_pred eEEEEEECCCc--------eEEEEEECCCCCceEEEEEeeeccCCCceeeeeEEcCCCCEEEEEecCEEEE
Confidence 44566788888 66654333211000011111222234566 6899999888888877665333
Done!