BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024870
(261 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TX2|A Chain A, Structure Of A Probable 6-Phosphogluconolactonase From
Mycobacterium Abscessus
Length = 251
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 90/196 (45%), Gaps = 15/196 (7%)
Query: 5 EPELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTV 64
E + + + L + D + A+ ERG +VL+GG L K R +
Sbjct: 7 ETIIEKYADTDALVTAAGDRLASAITGALAERGKAMIVLTGGGTGIALLKHLRD-VASGL 65
Query: 65 DWSKWHVFWAEENVVPKRHPDSFYRQAQEAFISKV--PILPAHVIPVS---HGVPGESAA 119
DW+ HVFW ++ VPK P+ QA EA + V P+ H +P S +G ++AA
Sbjct: 66 DWTNVHVFWGDDRYVPKTDPERNAWQAWEALLEHVNFPLRNMHAMPNSESEYGTDLDAAA 125
Query: 120 NNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVASIYPNNPVLQEDSQWVAWV 179
YE + P DCP FD+ LL +G + S++P+ ++E + V V
Sbjct: 126 LAYEQLLAANAE-------PGQDCPAFDVHLLGMGGEGHINSLFPHTDAVKETQRLVVAV 178
Query: 180 --SSNAPRESVTLTLP 193
S P + +TLTLP
Sbjct: 179 PDSPKPPPQRITLTLP 194
>pdb|3OC6|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Smegmatis, Apo Form
Length = 248
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 17/179 (9%)
Query: 22 ADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPK 81
D + +AI ERG ++VL+GG L K R +DWSK H++W +E VP+
Sbjct: 24 GDRLVDAISSAIGERGQATIVLTGGGTGIGLLKRVRERS-GEIDWSKVHIYWGDERFVPQ 82
Query: 82 RHPDSFYRQAQEAFISKVPILP--AHVIPVSHGVPG---ESAANNYEFSIRQQVRKRTVP 136
+ +QA+EA + + I P H + S G G E+AA Y + +
Sbjct: 83 DDDERNDKQAREALLDHIGIPPVNVHAMAASDGEFGDDLEAAAAGY---------AQLLS 133
Query: 137 VSPSSDCPQFDLVLLTLGTRCDVASIYPNNPVLQEDSQWVAWVSSN--APRESVTLTLP 193
+ S P FD+ LL +G V S++P+ ++E + V VS + P +TLTLP
Sbjct: 134 ANFDSSVPGFDVHLLGMGGEGHVNSLFPDTDAVRETERLVVGVSDSPKPPPRRITLTLP 192
>pdb|3ICO|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Tuberculosis
pdb|3ICO|B Chain B, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Tuberculosis
pdb|3ICO|C Chain C, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Tuberculosis
pdb|3ICO|D Chain D, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Tuberculosis
Length = 268
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 36 RGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPDSFYRQAQEAF 95
RG +VL+GG L + + ++WSK H+FW +E VP+ + +QA+ A
Sbjct: 54 RGQALIVLTGGGNGIALLRYLSAQA-QQIEWSKVHLFWGDERYVPEDDDERNLKQARRAL 112
Query: 96 ISKVPILPAHVIPVS-----HGVPGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVL 150
++ V I V P++ G ++AA YE QV + +P P FD+ L
Sbjct: 113 LNHVDIPSNQVHPMAASDGDFGGDLDAAALAYE-----QVLAAS--AAPGDPAPNFDVHL 165
Query: 151 LTLGTRCDVASIYPNNPVLQEDSQWVAWV--SSNAPRESVTLTLP 193
L +G + S++P++P + E ++ V V S P +TLTLP
Sbjct: 166 LGMGPEGHINSLFPHSPAVLESTRMVVAVDDSPKPPPRRITLTLP 210
>pdb|1VL1|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase (Tm1154)
From Thermotoga Maritima At 1.70a Resolution
Length = 232
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 81/218 (37%), Gaps = 29/218 (13%)
Query: 30 EAAIRERGSFSLVLSGGDMP----NRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPD 85
E + E+ +VL+GG P +L + P W++ H F ++E VP
Sbjct: 38 EKLLEEKDKIFVVLAGGRTPLPVYEKLAEQKFP-------WNRIHFFLSDERYVPLDSDQ 90
Query: 86 SFYRQAQEAFISKVPILPAHVIPVSHGVPGESAANNYEFSIRQQVRKRTVPVSPSSDCPQ 145
S +R E S+ I +V V +P E A YE IR S Q
Sbjct: 91 SNFRNINEVLFSRAKIPSGNVHYVDTSLPIEKACEKYEREIR-------------SATDQ 137
Query: 146 FDLVLLTLGTRCDVASIYPNNPVLQEDSQWVAWVSSNAPRESVTLTLPXXXXXXXXXXXX 205
FDL +L +G VASI+ +++ S + VTLT
Sbjct: 138 FDLAILGMGPDGHVASIFDLETGNKDNLVTFTDPSGDPKVPRVTLTFRALNTSLYVLFLI 197
Query: 206 SGIDVARPFLHVMMDQKPNRRLPAQLVSPKDGKLVWFA 243
G + ++ D LPA V K+ K VWF
Sbjct: 198 RGKEKINRLTEILKDTP----LPAYFVRGKE-KTVWFV 230
>pdb|1PBT|A Chain A, The Crystal Structure Of Tm1154, Oxidoreductase, SolDEVB
Family From Thermotoga Maritima
Length = 244
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 81/222 (36%), Gaps = 29/222 (13%)
Query: 30 EAAIRERGSFSLVLSGGDMP----NRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPD 85
E + E+ +VL+GG P +L + P W++ H F ++E VP
Sbjct: 48 EKLLEEKDKIFVVLAGGRTPLPVYEKLAEQKFP-------WNRIHFFLSDERYVPLDSDQ 100
Query: 86 SFYRQAQEAFISKVPILPAHVIPVSHGVPGESAANNYEFSIRQQVRKRTVPVSPSSDCPQ 145
S +R E S+ I +V V +P E A YE IR S Q
Sbjct: 101 SNFRNINEVLFSRAKIPSGNVHYVDTSLPIEKACEKYEREIR-------------SATDQ 147
Query: 146 FDLVLLTLGTRCDVASIYPNNPVLQEDSQWVAWVSSNAPRESVTLTLPXXXXXXXXXXXX 205
FDL +L G VASI+ +++ S + VTLT
Sbjct: 148 FDLAILGXGPDGHVASIFDLETGNKDNLVTFTDPSGDPKVPRVTLTFRALNTSLYVLFLI 207
Query: 206 SGIDVARPFLHVMMDQKPNRRLPAQLVSPKDGKLVWFADASA 247
G + ++ D LPA V K+ K VWF +
Sbjct: 208 RGKEKINRLTEILKDTP----LPAYFVRGKE-KTVWFVGKGS 244
>pdb|1Y89|A Chain A, Crystal Structure Of Devb Protein
pdb|1Y89|B Chain B, Crystal Structure Of Devb Protein
Length = 238
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 68/161 (42%), Gaps = 18/161 (11%)
Query: 9 RLFDSCEELDSCLADYVYQISEAAIRERGS-FSLVLSGGDMPNRLGKL-TRPPFLRTVDW 66
++F + + + LAD A ++G + LSGG P L KL P+ + W
Sbjct: 5 KIFPTADAVVKSLAD-----DXLAYSQQGQPVHISLSGGSTPKXLFKLLASQPYANDIQW 59
Query: 67 SKWHVFWAEENVVPKRHPDSFYRQAQEAFISKVPILPAHVIPVSHGVPGES--AANNYEF 124
H +W +E V +S Y +A SK+ PA I H + GE+ A F
Sbjct: 60 KNLHFWWGDERCVAPDDAESNYGEANALLFSKIN-XPAQNI---HRILGENEPQAEAERF 115
Query: 125 SIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVASIYPN 165
+ Q +P + P FD +LL +G AS++P
Sbjct: 116 A---QAXAHVIPT--ENGTPVFDWILLGVGADGHTASLFPG 151
>pdb|3E7F|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Trypanosoma Brucei Complexed With 6-Phosphogluconic Acid
pdb|3E7F|B Chain B, Crystal Structure Of 6-Phosphogluconolactonase From
Trypanosoma Brucei Complexed With 6-Phosphogluconic Acid
Length = 265
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 9/192 (4%)
Query: 5 EPELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTV 64
+P + + + +EL + + +I EA+ ++ S+ L+GG P L +
Sbjct: 3 KPTISVHATPQELSAAGCRKIVEIIEASGSQQWPLSIALAGGSTPKMTYARLHDEHLNLL 62
Query: 65 DWSK-WHVFWAEENVVPKRHPDSFYRQAQEAFISKVPILPAHVIPVSHGVPGESAANNYE 123
+ F +E +VP DS Y A+E + +P S P A +
Sbjct: 63 REKRALRFFMGDERMVPADSTDSNYNMAREVLLHDIPDDLVFPFDTSAVTPSAEATSADA 122
Query: 124 FSIRQQVRKRTVPVSP-------SSDCPQFDLVLLTLGTRCDVASIYPNNPVLQEDSQWV 176
+ + K+ + P P FD+VLL LG+ ASI+P + +E V
Sbjct: 123 MRVAEAYGKQLASLLPLKSVGEAGPKVPVFDVVLLGLGSDGHTASIFPGSQAEKETDGKV 182
Query: 177 AWVSSNAPRESV 188
VS P E++
Sbjct: 183 V-VSVGFPSETM 193
>pdb|2J0E|A Chain A, Three Dimensional Structure And Catalytic Mechanism Of 6-
Phosphogluconolactonase From Trypanosoma Brucei
pdb|2J0E|B Chain B, Three Dimensional Structure And Catalytic Mechanism Of 6-
Phosphogluconolactonase From Trypanosoma Brucei
pdb|3EB9|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Trypanosoma Brucei Complexed With Citrate
pdb|3EB9|B Chain B, Crystal Structure Of 6-Phosphogluconolactonase From
Trypanosoma Brucei Complexed With Citrate
Length = 266
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 9/192 (4%)
Query: 5 EPELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTV 64
+P + + + +EL + + +I EA+ ++ S+ L+GG P L +
Sbjct: 4 KPTISVHATPQELSAAGCRKIVEIIEASGSQQWPLSIALAGGSTPKMTYARLHDEHLNLL 63
Query: 65 DWSK-WHVFWAEENVVPKRHPDSFYRQAQEAFISKVPILPAHVIPVSHGVPGESAANNYE 123
+ F +E +VP DS Y A+E + +P S P A +
Sbjct: 64 REKRALRFFMGDERMVPADSTDSNYNMAREVLLHDIPDDLVFPFDTSAVTPSAEATSADA 123
Query: 124 FSIRQQVRKRTVPVSP-------SSDCPQFDLVLLTLGTRCDVASIYPNNPVLQEDSQWV 176
+ + K+ + P P FD+VLL LG+ ASI+P + +E V
Sbjct: 124 MRVAEAYGKQLASLLPLKSVGEAGPKVPVFDVVLLGLGSDGHTASIFPGSQAEKETDGKV 183
Query: 177 AWVSSNAPRESV 188
VS P E++
Sbjct: 184 V-VSVGFPSETM 194
>pdb|3LHI|A Chain A, Crystal Structure Of Putative 6-
Phosphogluconolactonase(Yp_207848.1) From Neisseria
Gonorrhoeae Fa 1090 At 1.33 A Resolution
Length = 232
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 83/237 (35%), Gaps = 31/237 (13%)
Query: 11 FDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMP----NRLGKLTRPPFLRTVDW 66
+++ E LAD V + A+ E+G L +SGG P N L + + +DW
Sbjct: 8 YENAAEAAQSLADAVADALQGALDEKGGAVLAVSGGRSPIAFFNALSQ-------KDLDW 60
Query: 67 SKWHVFWAEENVVPKRHPDSFYRQAQEAFISKVPILPAHVIPVSHGVPGESAANNYEFSI 126
+ A+E +VP H DS +E + + V G
Sbjct: 61 KNVGITLADERIVPTNHADSNTGLVREYLLKNKAAAAVWIPXVEDG------------KT 108
Query: 127 RQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVASIYPNNPVLQ---EDSQWVAWVSS-- 181
++ V Q D+++L G ASI+P P Q + S VA V +
Sbjct: 109 ETELHPDAVVDYALKHYKQPDVLILGXGNDGHTASIFPKAPQFQTAIDGSAGVALVHTTP 168
Query: 182 -NAPRESVTLTLPXXXXXXXXXXXXSGIDVARPFLHVMMDQKPNRRLPAQLVSPKDG 237
AP E ++ TL G + F Q NR P LV G
Sbjct: 169 VTAPHERISXTLDAIAHTGHVFLAIQGEEKKAVFDQAA--QGENREYPISLVLNHQG 223
>pdb|3NWP|A Chain A, Crystal Structure Of A 6-Phosphogluconolactonase
(Sbal_2240) From Shewanella Baltica Os155 At 1.40 A
Resolution
pdb|3NWP|B Chain B, Crystal Structure Of A 6-Phosphogluconolactonase
(Sbal_2240) From Shewanella Baltica Os155 At 1.40 A
Resolution
Length = 233
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 4 REPELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRT 63
+E + FD+ L+ LA + + A+ RG SLV+SGG P +L +L ++
Sbjct: 4 KETVFKSFDTPSALEQQLASKIASQLQEAVDARGKASLVVSGGSTPLKLFQLLSX---KS 60
Query: 64 VDWSKWHVFWAEENVVPKRHPDSFYRQAQEAFI 96
+DWS ++ A+E V S R +E +
Sbjct: 61 IDWSDVYITLADERWVEADADASNERLVREHLL 93
>pdb|3CSS|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Leishmania Guyanensis
Length = 267
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 81/200 (40%), Gaps = 17/200 (8%)
Query: 1 MERREPELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPF 60
M P +++ ++ ++ + + +A + + L LSGG P RL +
Sbjct: 1 MTSFAPTVKICENLSQMSFAAREVILAAIDARVDKSVPVVLALSGGSTPKRLYEELHEKD 60
Query: 61 LRTVDWSKWHVFWAEENVVPKRHPDSFYRQAQEAFISKVPILPAHVIPVSH--------- 111
L + +E ++ + S + A +A + VP + VI +
Sbjct: 61 LALLQQHAVQFILGDERLLSEDDEQSNFSMATKALLRDVP--SSDVISIDRRAALATSKD 118
Query: 112 ---GVPGE-SAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVASIYPNNP 167
G+ G + A +YE + + + + + S P D+VLL G+ ASI+P++
Sbjct: 119 EKGGLDGAWAVAQDYEVKLLNCLPCKQINGTAKS-VPVVDIVLLGFGSDGHTASIFPDS- 176
Query: 168 VLQEDSQWVAWVSSNAPRES 187
V D + V VS +P S
Sbjct: 177 VAATDEEHVVSVSFPSPTMS 196
>pdb|3CH7|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Leishmania Braziliensis
Length = 266
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 80/195 (41%), Gaps = 17/195 (8%)
Query: 6 PELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVD 65
P +++ ++ ++ + + +A + + L LSGG P RL + L +
Sbjct: 5 PTVKICENLSQMSFAAREVILAAIDARVDKSVPVVLALSGGSTPKRLYEELHEKDLALLQ 64
Query: 66 WSKWHVFWAEENVVPKRHPDSFYRQAQEAFISKVPILPAHVIPVSH------------GV 113
+E ++ + S + A +A + VP + VI + G+
Sbjct: 65 QHAVQFILGDERLLSEDDEQSNFSMATKALLRDVP--SSDVISIDRRAALATSKDEKGGL 122
Query: 114 PGE-SAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVASIYPNNPVLQED 172
G + A +YE + + + + + S P D+VLL G+ ASI+P++ V D
Sbjct: 123 DGAWAVAQDYEVKLLNCLPCKQINGTAKS-VPVVDIVLLGFGSDGHTASIFPDS-VAATD 180
Query: 173 SQWVAWVSSNAPRES 187
+ V VS +P S
Sbjct: 181 EEHVVSVSFPSPTMS 195
>pdb|3LWD|A Chain A, Crystal Structure Of Putative 6-Phosphogluconolactonase
(Yp_574786.1) From Chromohalobacter Salexigens Dsm 3043
At 1.88 A Resolution
Length = 226
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 15 EELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFL-----RTVDWSKW 69
+ L LAD V Q EA + +R LV+SGG P PF + + W++
Sbjct: 11 QRLAERLADTVAQALEADLAKRERALLVVSGGSTPK--------PFFTSLAAKALPWARV 62
Query: 70 HVFWAEENVVPKRHPDSFYRQAQEAFI 96
V A+E V DS R +E +
Sbjct: 63 DVTLADERWVTADDADSNARLVRETLL 89
>pdb|2DQ3|A Chain A, Crystal Structure Of Aq_298
pdb|2DQ3|B Chain B, Crystal Structure Of Aq_298
Length = 425
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 83 HPDSFYRQAQEAF-----ISKVPILPAHVIPVSHGVPGESAANNYEFSIRQQVRKRTVPV 137
HPD+ Y + ++ + ++ LP V+ + G G SAA Y+ + + + +
Sbjct: 291 HPDTSYDELEKLVKDAEEVLQLLGLPYRVVELCTGDLGFSAAKTYDIEVWFPSQNKYREI 350
Query: 138 SPSSDCPQF 146
S S+C F
Sbjct: 351 SSCSNCEDF 359
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,716,174
Number of Sequences: 62578
Number of extensions: 297791
Number of successful extensions: 853
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 832
Number of HSP's gapped (non-prelim): 14
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)