Query 024870
Match_columns 261
No_of_seqs 149 out of 1135
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:02:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024870.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024870hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01198 pgl 6-phosphoglucono 100.0 2E-66 4.3E-71 453.2 24.7 229 10-251 1-233 (233)
2 PLN02360 probable 6-phosphoglu 100.0 3.2E-65 6.8E-70 454.1 28.0 250 1-253 6-263 (268)
3 KOG3147 6-phosphogluconolacton 100.0 3.4E-64 7.5E-69 429.4 25.2 240 5-254 8-251 (252)
4 PTZ00285 glucosamine-6-phospha 100.0 2.7E-64 5.8E-69 445.0 22.7 234 6-256 1-252 (253)
5 COG0363 NagB 6-phosphogluconol 100.0 1.8E-62 4E-67 427.6 21.2 230 6-252 1-237 (238)
6 cd01400 6PGL 6PGL: 6-Phosphogl 100.0 1.6E-60 3.4E-65 412.6 24.0 216 15-243 1-219 (219)
7 TIGR00502 nagB glucosamine-6-p 100.0 2.8E-60 6E-65 420.7 21.3 231 6-253 1-249 (259)
8 PRK09762 galactosamine-6-phosp 100.0 5.4E-60 1.2E-64 412.4 19.5 220 6-245 1-232 (232)
9 PRK12358 putative 6-phosphoglu 100.0 7E-58 1.5E-62 400.9 20.8 219 6-251 1-237 (239)
10 PRK02122 glucosamine-6-phospha 100.0 1.4E-56 3E-61 438.4 22.6 233 4-253 26-276 (652)
11 PF01182 Glucosamine_iso: Gluc 100.0 3.1E-57 6.8E-62 386.6 14.3 195 17-219 1-199 (199)
12 PRK00443 nagB glucosamine-6-ph 100.0 4.4E-49 9.4E-54 349.0 20.6 235 6-256 1-252 (261)
13 cd01399 GlcN6P_deaminase GlcN6 100.0 3.5E-46 7.6E-51 324.5 18.7 215 16-251 2-232 (232)
14 KOG3148 Glucosamine-6-phosphat 100.0 4.4E-45 9.5E-50 300.1 11.1 234 6-255 1-251 (273)
15 cd00458 SugarP_isomerase Sugar 100.0 9E-42 1.9E-46 284.3 16.1 168 19-243 2-169 (169)
16 COG2390 DeoR Transcriptional r 97.9 0.00095 2.1E-08 61.1 16.0 206 14-252 93-317 (321)
17 PF04198 Sugar-bind: Putative 97.8 7.6E-05 1.7E-09 66.1 7.2 199 15-251 32-253 (255)
18 PRK15418 transcriptional regul 96.9 0.06 1.3E-06 49.3 15.8 51 186-251 263-313 (318)
19 PF14417 MEDS: MEDS: MEthanoge 86.4 16 0.00034 30.6 11.4 121 8-132 23-152 (191)
20 COG0037 MesJ tRNA(Ile)-lysidin 78.7 28 0.00061 30.8 10.6 110 25-152 6-127 (298)
21 TIGR00730 conserved hypothetic 73.2 13 0.00029 31.0 6.5 45 33-78 93-138 (178)
22 PF03641 Lysine_decarbox: Poss 68.8 2.6 5.7E-05 33.3 1.3 53 34-92 51-104 (133)
23 PF01171 ATP_bind_3: PP-loop f 66.7 14 0.00031 30.4 5.4 101 38-160 1-106 (182)
24 COG0519 GuaA GMP synthase, PP- 61.2 40 0.00087 30.5 7.3 67 23-95 9-75 (315)
25 COG1606 ATP-utilizing enzymes 51.6 45 0.00098 29.7 6.0 63 27-94 8-70 (269)
26 TIGR00884 guaA_Cterm GMP synth 50.2 34 0.00073 31.2 5.2 52 24-81 5-56 (311)
27 KOG0347 RNA helicase [RNA proc 49.3 32 0.00069 34.1 5.0 82 7-93 266-367 (731)
28 PF14824 Sirohm_synth_M: Siroh 49.3 16 0.00036 21.4 2.0 17 35-51 1-18 (30)
29 PRK10590 ATP-dependent RNA hel 48.1 73 0.0016 30.4 7.4 63 7-77 78-158 (456)
30 cd00553 NAD_synthase NAD+ synt 47.1 56 0.0012 28.5 6.0 59 13-77 2-60 (248)
31 COG1611 Predicted Rossmann fol 44.1 69 0.0015 27.4 5.9 88 32-125 106-195 (205)
32 PRK00919 GMP synthase subunit 43.6 70 0.0015 29.2 6.2 51 25-81 11-61 (307)
33 PLN02347 GMP synthetase 41.8 59 0.0013 32.1 5.8 52 27-83 220-271 (536)
34 PRK06696 uridine kinase; Valid 41.1 29 0.00064 29.6 3.2 60 14-81 3-65 (223)
35 PRK02090 phosphoadenosine phos 40.1 52 0.0011 28.6 4.7 46 27-78 30-76 (241)
36 PRK13980 NAD synthetase; Provi 39.8 83 0.0018 27.7 6.0 57 13-77 9-67 (265)
37 PRK00074 guaA GMP synthase; Re 39.4 68 0.0015 31.4 5.8 51 25-81 205-255 (511)
38 PF00098 zf-CCHC: Zinc knuckle 37.5 22 0.00047 18.1 1.1 12 153-164 6-17 (18)
39 PF09623 Cas_NE0113: CRISPR-as 36.9 1.1E+02 0.0023 26.7 6.1 60 16-77 91-152 (224)
40 PLN00206 DEAD-box ATP-dependen 36.4 1.4E+02 0.0029 29.2 7.4 92 7-113 199-310 (518)
41 PF14451 Ub-Mut7C: Mut7-C ubiq 36.1 77 0.0017 22.9 4.3 44 35-84 21-64 (81)
42 cd01713 PAPS_reductase This do 35.1 95 0.0021 24.2 5.2 38 38-78 1-38 (173)
43 PRK01297 ATP-dependent RNA hel 34.1 1.2E+02 0.0027 28.9 6.6 63 7-77 165-246 (475)
44 PRK11634 ATP-dependent RNA hel 33.6 1.6E+02 0.0035 29.6 7.5 62 8-77 78-158 (629)
45 TIGR03642 cas_csx13 CRISPR-ass 33.6 1.1E+02 0.0024 24.1 5.1 44 13-57 66-111 (124)
46 PRK10660 tilS tRNA(Ile)-lysidi 33.1 1.8E+02 0.004 27.7 7.5 53 25-78 4-56 (436)
47 PRK00768 nadE NAD synthetase; 32.9 63 0.0014 28.9 4.1 31 13-47 17-49 (268)
48 TIGR00725 conserved hypothetic 32.9 85 0.0018 25.6 4.6 40 32-78 87-127 (159)
49 TIGR02584 cas_NE0113 CRISPR-as 32.5 92 0.002 26.8 4.8 57 18-76 99-157 (209)
50 KOG3363 Uncharacterized conser 32.2 31 0.00067 28.6 1.8 22 143-164 109-130 (196)
51 TIGR00552 nadE NAD+ synthetase 32.1 61 0.0013 28.3 3.8 25 23-47 7-33 (250)
52 PTZ00323 NAD+ synthase; Provis 31.7 72 0.0016 28.9 4.3 31 13-47 25-57 (294)
53 PRK00876 nadE NAD synthetase; 31.0 1.6E+02 0.0034 27.1 6.5 60 13-77 11-70 (326)
54 COG0171 NadE NAD synthase [Coe 31.0 2.3E+02 0.005 25.3 7.3 73 13-92 4-80 (268)
55 PF07005 DUF1537: Protein of u 29.9 85 0.0018 26.6 4.3 40 18-57 176-215 (223)
56 KOG0331 ATP-dependent RNA heli 29.1 2.3E+02 0.005 27.9 7.5 93 5-109 165-277 (519)
57 PRK10696 tRNA 2-thiocytidine b 28.8 1.2E+02 0.0026 26.6 5.1 43 35-78 28-71 (258)
58 TIGR00268 conserved hypothetic 28.6 1.3E+02 0.0028 26.2 5.3 44 27-76 3-46 (252)
59 PF11019 DUF2608: Protein of u 28.2 2.9E+02 0.0062 24.3 7.4 90 31-127 91-199 (252)
60 COG0513 SrmB Superfamily II DN 28.0 1.7E+02 0.0036 28.6 6.4 70 7-81 102-189 (513)
61 PRK00109 Holliday junction res 27.6 83 0.0018 25.0 3.6 35 37-78 56-99 (138)
62 PF02698 DUF218: DUF218 domain 27.2 1.7E+02 0.0038 22.9 5.5 15 35-49 35-49 (155)
63 PF13419 HAD_2: Haloacid dehal 27.0 1.9E+02 0.0041 22.2 5.7 70 32-112 88-159 (176)
64 cd01997 GMP_synthase_C The C-t 27.0 1.9E+02 0.0042 26.1 6.2 41 38-83 1-41 (295)
65 PF14639 YqgF: Holliday-juncti 26.7 61 0.0013 26.3 2.7 66 27-95 53-122 (150)
66 KOG1800 Ferredoxin/adrenodoxin 26.6 2.7E+02 0.006 26.6 7.1 70 145-219 108-180 (468)
67 TIGR03723 bact_gcp putative gl 25.3 1E+02 0.0022 28.1 4.1 40 19-58 241-281 (314)
68 PF02540 NAD_synthase: NAD syn 25.3 50 0.0011 28.9 2.0 49 26-78 6-56 (242)
69 TIGR00329 gcp_kae1 metallohydr 25.1 1.1E+02 0.0023 27.7 4.3 40 19-58 240-280 (305)
70 TIGR00273 iron-sulfur cluster- 24.9 4.4E+02 0.0095 25.3 8.5 107 3-133 62-182 (432)
71 PRK09270 nucleoside triphospha 24.8 2E+02 0.0044 24.4 5.8 63 16-80 10-76 (229)
72 PRK11192 ATP-dependent RNA hel 24.3 2E+02 0.0043 27.0 6.1 27 48-77 130-156 (434)
73 TIGR03722 arch_KAE1 universal 24.3 1.3E+02 0.0028 27.4 4.6 40 19-58 224-264 (322)
74 cd00293 USP_Like Usp: Universa 24.1 1.9E+02 0.0042 20.8 4.9 21 145-165 93-113 (130)
75 PF09793 AD: Anticodon-binding 24.0 61 0.0013 23.8 2.0 41 45-86 30-73 (91)
76 PRK04837 ATP-dependent RNA hel 23.9 2.2E+02 0.0048 26.6 6.4 27 48-77 140-166 (423)
77 PTZ00110 helicase; Provisional 23.5 1.4E+02 0.0031 29.3 5.1 56 48-112 260-317 (545)
78 COG0560 SerB Phosphoserine pho 23.4 2.1E+02 0.0046 24.3 5.6 79 29-112 85-170 (212)
79 TIGR01536 asn_synth_AEB aspara 22.8 5.3E+02 0.011 24.6 8.7 45 13-57 230-274 (467)
80 PTZ00077 asparagine synthetase 22.4 7.8E+02 0.017 24.5 11.2 35 13-47 214-248 (586)
81 PRK09604 UGMP family protein; 22.4 1.2E+02 0.0026 27.8 4.1 40 19-58 236-276 (332)
82 PLN02772 guanylate kinase 22.3 88 0.0019 29.7 3.2 96 155-250 76-194 (398)
83 PF03702 UPF0075: Uncharacteri 21.8 3.8E+02 0.0083 25.0 7.3 79 13-97 258-341 (364)
84 TIGR02039 CysD sulfate adenyly 21.3 2.5E+02 0.0053 25.5 5.7 49 27-78 10-59 (294)
85 COG2099 CobK Precorrin-6x redu 20.9 5.9E+02 0.013 22.7 7.8 77 6-116 109-186 (257)
86 PRK13981 NAD synthetase; Provi 20.9 2.4E+02 0.0051 27.6 6.0 57 14-78 260-318 (540)
87 cd00248 Mth938-like Mth938-lik 20.7 1.4E+02 0.0031 22.5 3.6 14 145-158 52-65 (109)
88 TIGR00434 cysH phosophoadenyly 20.6 1.7E+02 0.0036 24.6 4.4 42 29-76 5-47 (212)
No 1
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=100.00 E-value=2e-66 Score=453.24 Aligned_cols=229 Identities=34% Similarity=0.541 Sum_probs=209.6
Q ss_pred EeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCchhHHH
Q 024870 10 LFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPDSFYR 89 (261)
Q Consensus 10 i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~ 89 (261)
+|+|.+++++.+|++|.+.+++++++++.++|+||||+||+.+|+.|++. .++|+||+|||+||||||++|++||++
T Consensus 1 v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~lalsGGstp~~~y~~L~~~---~i~w~~v~~f~~DER~Vp~~~~~SN~~ 77 (233)
T TIGR01198 1 VFSNSAELAEALAERIATKLQTALAERGQFSLALSGGRSPIALLEALAAQ---PLDWSRIHLFLGDERYVPLDHADSNTG 77 (233)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCccHHHHHHHHhhC---CCCcceEEEEEecccccCCCCccchHH
Confidence 58999999999999999999999999999999999999999999999975 799999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCcEEcCCCCC-CHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCcccccCCCCCC
Q 024870 90 QAQEAFISKVPILPAHVIPVSHGV-PGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVASIYPNNPV 168 (261)
Q Consensus 90 ~~~~~ll~~~~ip~~~i~~~~~~~-~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~aslfP~~~~ 168 (261)
++|++||+++++|++|+|++++.. +++++|++|++.|++.++.. +.|.||+++||||+||||||||||++.
T Consensus 78 ~~~~~Ll~~~~i~~~~i~~~~~~~~~~~~~a~~y~~~i~~~~~~~--------~~p~fDl~lLGmG~DGHtASlFPg~~~ 149 (233)
T TIGR01198 78 LAREALLDRVAIPASNIHPMPTELSDIEEAAELYEQELAAAFQPI--------VFPVFDLLLLGMGPDGHTASLFPHTPA 149 (233)
T ss_pred HHHHHHhccCCCChhheeeCCCccCCHHHHHHHHHHHHHHhhccc--------CCCcccEEEECCcCCccceeCCCCChh
Confidence 999999999999999999999876 79999999999999865421 257899999999999999999999998
Q ss_pred CCCCCceEEEec--CCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhc-CCCCCcccccccccccCCeEEEEecH
Q 024870 169 LQEDSQWVAWVS--SNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMM-DQKPNRRLPAQLVSPKDGKLVWFADA 245 (261)
Q Consensus 169 l~~~~~~~~~~~--~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~-~~~~~~~~Pas~l~~~~~~v~~~~D~ 245 (261)
+.+.++++.... +++|++|||||++.|++||+|+|+++|++|+++++++++ ++. +.++||++++ .|++++||+|+
T Consensus 150 l~~~~~~~~~~~~~~~~p~~RITlt~~~i~~a~~i~~lv~G~~Ka~~~~~~l~~~~~-~~~~Pas~l~-~~~~~~~~~D~ 227 (233)
T TIGR01198 150 LQETERLVTVLTKSPKPPHERITLTLPAINAARKVFLLIAGEEKRNALAEALAVEAE-PYPLPAAGVL-HSGKTLWLLDY 227 (233)
T ss_pred hccccceEEeecCCCCCCCCcEEecHHHHhcCCeEEEEEEChHHHHHHHHHHhcCCC-cccCCHhHcC-CCCcEEEEECh
Confidence 877666655433 788899999999999999999999999999999999998 544 3679999999 58999999999
Q ss_pred HHHhcc
Q 024870 246 SAASFF 251 (261)
Q Consensus 246 ~Aa~~l 251 (261)
+|+++|
T Consensus 228 ~Aa~~l 233 (233)
T TIGR01198 228 AAARKL 233 (233)
T ss_pred HhhhcC
Confidence 999865
No 2
>PLN02360 probable 6-phosphogluconolactonase
Probab=100.00 E-value=3.2e-65 Score=454.13 Aligned_cols=250 Identities=44% Similarity=0.807 Sum_probs=216.4
Q ss_pred CCCCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCC-CCCCCCCCcEEEEEeccccc
Q 024870 1 MERREPELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPP-FLRTVDWSKWHVFWAEENVV 79 (261)
Q Consensus 1 ~~~~~~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~-~~~~i~w~~v~~f~~DEr~v 79 (261)
|.+..|++++|+|.+++++.+|+.|.+.+++++++++.++|+|||||+|. +|..|++. ...++||+||+|||+|||||
T Consensus 6 ~~~~~~~l~i~~~~~el~~~~a~~i~~~~~~a~~~~~~~~lalsGGS~~~-~~~~L~~~~~~~~idW~~v~~f~~DER~V 84 (268)
T PLN02360 6 VHKDRGEIRVHENLDELSTDLAEYIAELSEASVKERGVFAIALSGGSLIS-FMGKLCEAPYNKTVDWAKWYIFWADERVV 84 (268)
T ss_pred cccCCceEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHH-HHHHHhccccccCCCCceEEEEeeecccC
Confidence 45678999999999999999999999999999999999999999999766 66666654 35679999999999999999
Q ss_pred CCCCchhHHHHHHHHhcCCCCCCCCcEEcCCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCcc
Q 024870 80 PKRHPDSFYRQAQEAFISKVPILPAHVIPVSHGVPGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDV 159 (261)
Q Consensus 80 p~~~~~Sn~~~~~~~ll~~~~ip~~~i~~~~~~~~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~ 159 (261)
|++|++||++++|++||+++++|+.|||++++..+++++|++|+++|+++++....+....++.|+||++|||||+||||
T Consensus 85 p~~~~~SN~~~~r~~Ll~~~~i~~~~i~~~~~~~~~~~~a~~ye~~l~~~~~~~~~~~~~~~~~p~fDlvlLGmG~DGHt 164 (268)
T PLN02360 85 AKNHADSNYKLAKDGLLSKVPVVPSHVYSINDTVTAEEAATDYEFAIRQLVKTRTIGVSDISDCPKFDLILLGMGSDGHV 164 (268)
T ss_pred CCCCcchHHHHHHHHhhccCCCChhhcccCCCCCCHHHHHHHHHHHHHHHhhccccccccccCCCcccEEEEccCCCCce
Confidence 99999999999999999999999999999998778999999999999987642211101111357899999999999999
Q ss_pred cccCCCCCCCCCCCceEEEec--CCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhc----CCCCCccccccccc
Q 024870 160 ASIYPNNPVLQEDSQWVAWVS--SNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMM----DQKPNRRLPAQLVS 233 (261)
Q Consensus 160 aslfP~~~~l~~~~~~~~~~~--~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~----~~~~~~~~Pas~l~ 233 (261)
||||||++.+.+...++.... +++|++|||||++.|++||+|+|+++|++|+++|++++. +++ +..+||+.++
T Consensus 165 ASlFPg~~~l~~~~~~v~~~~~~~~~p~~RITlt~~~i~~A~~i~llv~G~~Ka~al~~~l~~~~~~~~-~~~~Pas~l~ 243 (268)
T PLN02360 165 ASLFPNHPALEEKDDWVTFITDSPKPPPERITFTLPVINSASNVAVVATGESKANAVHLAIDDVTEGPD-APSLPARMVQ 243 (268)
T ss_pred eccCCCCchhhhccceEEeecCCCCCCCceEEEcHHHHhcCCeEEEEEeCccHHHHHHHHHhhccCCCC-cccCChhhhc
Confidence 999999987766655665443 788899999999999999999999999999999999995 544 3679999999
Q ss_pred ccC-CeEEEEecHHHHhcccc
Q 024870 234 PKD-GKLVWFADASAASFFLR 253 (261)
Q Consensus 234 ~~~-~~v~~~~D~~Aa~~l~~ 253 (261)
. | ++++||+|++|+++|.+
T Consensus 244 ~-~~~~~~w~~D~~Aa~~l~~ 263 (268)
T PLN02360 244 P-TKGKLVWFLDKPAASKLDG 263 (268)
T ss_pred C-CCCcEEEEECHHHHhhCcc
Confidence 4 6 59999999999998864
No 3
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-64 Score=429.38 Aligned_cols=240 Identities=42% Similarity=0.729 Sum_probs=225.6
Q ss_pred CCeEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCc
Q 024870 5 EPELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHP 84 (261)
Q Consensus 5 ~~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~ 84 (261)
++++.+|++.+++++.+++++.+....+++++|.|+|+|||||.+..|++.|...+.+.++|++|+|||+|||+||.+|+
T Consensus 8 ~~~~~v~~~~~el~~~l~~~~~~~s~~~~~~~g~F~i~lSGGSLi~~L~~~l~~~~~~~i~w~kW~if~~DER~Vp~~~~ 87 (252)
T KOG3147|consen 8 MVKVIVFSSEEELIEALAGYIAEKSEKALKKRGRFTLALSGGSLIQVLSKLLESPYQDDIDWSKWHIFFVDERVVPLDDP 87 (252)
T ss_pred CceeeecccHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCCcHHHHHHHHhcccccCCCCccceEEEEEeccccCCCCC
Confidence 56699999999999999999999999999999999999999999999999999878789999999999999999999999
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEcCCCCC--CHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCccccc
Q 024870 85 DSFYRQAQEAFISKVPILPAHVIPVSHGV--PGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVASI 162 (261)
Q Consensus 85 ~Sn~~~~~~~ll~~~~ip~~~i~~~~~~~--~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~asl 162 (261)
+|||+..+++|+++++++..|+|++|.++ +++++++.|++.+++.+... ..|.|||+|||||+|||||||
T Consensus 88 dSNyg~~~~~~l~~v~~~~~~i~~id~~L~~~~~~~a~~ye~~l~~~v~~~--------s~p~FDL~LLG~GpDGHtaSL 159 (252)
T KOG3147|consen 88 DSNYGLAKRHFLSKVPIPHYNIYPIDESLIADAEEAADLYEKELKALVAND--------SFPVFDLLLLGMGPDGHTASL 159 (252)
T ss_pred cccHHHHHHhhhhhCCCCcCcEEECChhhccCHHHHHHHHHHHHHHHhccC--------CCcceeEEEeccCCCCCeeec
Confidence 99999999999999999999999999875 69999999999999987763 268899999999999999999
Q ss_pred CCCCCCCCCCCceEEEec--CCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCcccccccccccCCeEE
Q 024870 163 YPNNPVLQEDSQWVAWVS--SNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRLPAQLVSPKDGKLV 240 (261)
Q Consensus 163 fP~~~~l~~~~~~~~~~~--~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~Pas~l~~~~~~v~ 240 (261)
|||++.+.++.+||++++ |++|++|||+|+++|+.|++++|+++|+.|+++++.++.... .++|++++.+..++++
T Consensus 160 FP~~~~l~e~~~wV~~itdSPkpPp~RITlTLPvIn~A~~v~fvv~G~~Ka~iv~~i~~~~~--~~lPaa~V~~~~~~l~ 237 (252)
T KOG3147|consen 160 FPGHPLLNEKLKWVVPITDSPKPPPKRITLTLPVINHAKNVAFVVCGASKAEIVKAILEDKE--KKLPAALVNPAKGKLV 237 (252)
T ss_pred CCCchhhhcccCEEEEeCCCCCCCCccEEEehHHhhhhhceEEEEeCcchhHhHHHHHhccc--ccCCchheeccCCeEE
Confidence 999999999999999887 999999999999999999999999999999999999999754 5799999997668999
Q ss_pred EEecHHHHhccccC
Q 024870 241 WFADASAASFFLRG 254 (261)
Q Consensus 241 ~~~D~~Aa~~l~~~ 254 (261)
||+|++|++++.+.
T Consensus 238 WflD~~A~~~l~~~ 251 (252)
T KOG3147|consen 238 WFLDDDAASKLPVG 251 (252)
T ss_pred EEEchHHhcCCCCC
Confidence 99999999998764
No 4
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=100.00 E-value=2.7e-64 Score=444.96 Aligned_cols=234 Identities=19% Similarity=0.217 Sum_probs=212.1
Q ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHH-HHHhcCcEEEEEcCCCcHHHHHHhhCCCC-CCCCCCCcEEEEEecccc-cCCC
Q 024870 6 PELRLFDSCEELDSCLADYVYQISEA-AIRERGSFSLVLSGGDMPNRLGKLTRPPF-LRTVDWSKWHVFWAEENV-VPKR 82 (261)
Q Consensus 6 ~~i~i~~~~~~l~~~~A~~i~~~i~~-~i~~~~~~~l~lsGG~tp~~l~~~L~~~~-~~~i~w~~v~~f~~DEr~-vp~~ 82 (261)
|+|++|+|.+++++.+|+.|.+.+++ ++++++.++|+||||+||+.+|+.|++.+ .+.++|+||+|||+|||| ||++
T Consensus 1 m~i~~~~~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgG~tP~~~y~~L~~~~~~~~i~w~~v~if~~DEr~~Vp~~ 80 (253)
T PTZ00285 1 MRIVISEDADAVADYTSNYIIKRINDFKPTSDRPFVLGLPTGSTPLPTYQELIRAYREGRVSFSNVVTFNMDEYVGLPRD 80 (253)
T ss_pred CeEEEECCHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEcCCCCHHHHHHHHHHHHhhcCCchhHeEEECCcEEecCCCC
Confidence 68999999999999999999999999 88999999999999999999999998653 568999999999999999 9999
Q ss_pred CchhHHHHHHHHhcCCCCCCCCcEEcCCCC-CCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCcccc
Q 024870 83 HPDSFYRQAQEAFISKVPILPAHVIPVSHG-VPGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVAS 161 (261)
Q Consensus 83 ~~~Sn~~~~~~~ll~~~~ip~~~i~~~~~~-~~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~as 161 (261)
|++||+++++++||++++||++|+|++++. .+++++|++|++.|++ .++||+++||||+||||||
T Consensus 81 ~~~Sn~~~~~~~l~~~~~ip~~~~~~~~~~~~~~~~~~~~y~~~i~~--------------~~~~Dl~lLG~G~DGH~As 146 (253)
T PTZ00285 81 HPQSYHYFMKENFFDHVDIKEENRHILNGTAPDLEEECRRYEEKIRA--------------VGGIDLFLAGIGTDGHIAF 146 (253)
T ss_pred chHHHHHHHHHHHhccCCCCHhhEEcCCCCCcCHHHHHHHHHHHHHH--------------hCCCcEEEeCCCCCCceee
Confidence 999999999999999999999999999876 4899999999999986 5679999999999999999
Q ss_pred cCCCCCCCCCCCceEEE-------------ec-CCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCccc
Q 024870 162 IYPNNPVLQEDSQWVAW-------------VS-SNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRL 227 (261)
Q Consensus 162 lfP~~~~l~~~~~~~~~-------------~~-~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~ 227 (261)
||||++.. +.++.+.. .. +.+|++|||||++.|++||+|+|+++|++|+++|+++++++.+ ..+
T Consensus 147 lfP~~~~~-~~~~~v~~~~~t~~~~~~~~~~~~~~~p~~riTlt~~~i~~a~~i~l~~~G~~K~~~l~~~l~~~~~-~~~ 224 (253)
T PTZ00285 147 NEPGSSLD-SRTRVKSLNQETIDANARFFGNDISKVPTMALTVGIRTIMEAREVLLLATGASKAIAVARCVEGGVT-HMC 224 (253)
T ss_pred cCCCCccC-CceEEEECCHHHHHHHhhhccCCcCCCCCccEEcCHHHHHhCCEEEEEecCHHHHHHHHHHhcCCCC-Ccc
Confidence 99999863 33333321 11 6778899999999999999999999999999999999998764 689
Q ss_pred ccccccccCCeEEEEecHHHHhccccCCC
Q 024870 228 PAQLVSPKDGKLVWFADASAASFFLRGSG 256 (261)
Q Consensus 228 Pas~l~~~~~~v~~~~D~~Aa~~l~~~~~ 256 (261)
|+++++ .|++++||+|++||+.|..+++
T Consensus 225 Pas~l~-~~~~~~~~~D~~Aa~~l~~~~~ 252 (253)
T PTZ00285 225 PASALQ-MHPAAVLCLDEDATLELKVKTT 252 (253)
T ss_pred chHHhc-cCCCEEEEEcHHHHhhhhhccc
Confidence 999999 5899999999999999987764
No 5
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-62 Score=427.62 Aligned_cols=230 Identities=28% Similarity=0.440 Sum_probs=206.6
Q ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCch
Q 024870 6 PELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPD 85 (261)
Q Consensus 6 ~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~~ 85 (261)
|++++|++++++++.+++.|.+.+.+.++++++++|+||||+||..+|+.|++..++.+||++|++||+|||+||++|++
T Consensus 1 m~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~l~LsgGsTP~~~ye~L~~~~~~~~~w~~v~~f~~DEr~vp~~~~~ 80 (238)
T COG0363 1 MKLIIFEDAEELAKAAAEIIADKLQAAKAERGRAVLALSGGSTPLALYEALVKLPQGQLDWSKVTIFNLDERVVPPDDPE 80 (238)
T ss_pred CceEEcCCHHHHHHHHHHHHHHHHHhhhhccCcEEEEECCCCCHHHHHHHHHhhhccCCCchheEEEeccccccCCCCch
Confidence 68999999999999999999999999999999999999999999999999987644679999999999999999999999
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEcCCCCCCHHHHHH-HHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCcccccCC
Q 024870 86 SFYRQAQEAFISKVPILPAHVIPVSHGVPGESAAN-NYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVASIYP 164 (261)
Q Consensus 86 Sn~~~~~~~ll~~~~ip~~~i~~~~~~~~~~~~a~-~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~aslfP 164 (261)
||+++|+++||+++.+++.|+|.++++ +++++|+ +|++.|.+ .++||+++||||+|||||||||
T Consensus 81 Sn~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~e~~~~ye~~i~~--------------~~~~Dl~lLG~G~DGHias~fP 145 (238)
T COG0363 81 SNYGLMRRNLFDHIDIPAEFIHNGDAS-DPDAECAARYEAKLPS--------------AGGFDLILLGMGEDGHIASLFP 145 (238)
T ss_pred hHHHHHHHHHhccccCcHhhcCCCCcc-ChhHHHHHHHHhhccc--------------cCCCCEEEEcccCCCcccccCC
Confidence 999999999999999999998887765 4444676 99999975 5689999999999999999999
Q ss_pred CCCCCCC----CCceE-EEec-CCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCcccccccccccCCe
Q 024870 165 NNPVLQE----DSQWV-AWVS-SNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRLPAQLVSPKDGK 238 (261)
Q Consensus 165 ~~~~l~~----~~~~~-~~~~-~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~Pas~l~~~~~~ 238 (261)
+++.+.. ....+ .... |++|.+|||||++.|++||+|+|+++|+.|+++++++++++.+ ..+|++.++ .|++
T Consensus 146 ~~~~l~~~~~~~~~~~~~~~~~~~~P~~riTlt~~~I~~Ak~v~llv~G~~Ka~al~~~l~~~~~-~~~Pas~l~-~~~~ 223 (238)
T COG0363 146 GTPALDSATTEEANSRVFVGDSPKVPKERITLTLPTILDAKEVLLLVTGEEKADALKQALEGPVT-ELYPASILQ-LHPN 223 (238)
T ss_pred CCcccccccchhhceeeecCCCCCCCcceEEeCHHHHhcCCeEEEEEcCchHHHHHHHHhcCCCc-ccccHHHHh-cCCC
Confidence 9996642 22323 3333 8899999999999999999999999999999999999999885 569999999 6889
Q ss_pred EEEEecHHHHhccc
Q 024870 239 LVWFADASAASFFL 252 (261)
Q Consensus 239 v~~~~D~~Aa~~l~ 252 (261)
++||+|++|+++|.
T Consensus 224 ~~~~~d~~A~~~l~ 237 (238)
T COG0363 224 VTWFLDEEAASLLK 237 (238)
T ss_pred eEEEEchHHhhhcc
Confidence 99999999999874
No 6
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=100.00 E-value=1.6e-60 Score=412.61 Aligned_cols=216 Identities=40% Similarity=0.666 Sum_probs=195.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCchhHHHHHHHH
Q 024870 15 EELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPDSFYRQAQEA 94 (261)
Q Consensus 15 ~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~~~~~ 94 (261)
+++++.+|+.|++.+++++++++.++|+||||+||+.+|+.|++.. .+||+||+|||+||||||++|++||+++++++
T Consensus 1 ~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~~y~~L~~~~--~i~w~~v~~f~~DEr~Vp~~~~~Sn~~~~~~~ 78 (219)
T cd01400 1 EALAEALADRIAEALAAAIAKRGRFSLALSGGSTPKPLYELLAAAP--ALDWSKVHVFLGDERCVPPDDPDSNYRLAREA 78 (219)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCeEEEEECCCccHHHHHHHhcccc--CCCCceEEEEEeeccccCCCCcccHHHHHHHH
Confidence 3788999999999999999999999999999999999999999863 59999999999999999999999999999999
Q ss_pred hcCCCCCCCCcEEcCCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCcccccCCCCCCC-CCCC
Q 024870 95 FISKVPILPAHVIPVSHGVPGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVASIYPNNPVL-QEDS 173 (261)
Q Consensus 95 ll~~~~ip~~~i~~~~~~~~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~aslfP~~~~l-~~~~ 173 (261)
||+++++|++|+|++++..+++++|++|++.|+++++ +.|+||+++||||+|||||||||+++.+ .+++
T Consensus 79 ll~~~~~~~~~v~~~~~~~~~~~~a~~y~~~i~~~~~----------~~~~~Dl~lLGmG~DGH~ASlfP~~~~~~~~~~ 148 (219)
T cd01400 79 LLSHVAIPAANIHPIPTELGPEDAAAAYEKELRALFG----------GVPPFDLVLLGMGPDGHTASLFPGHPALLEETD 148 (219)
T ss_pred hhccCCCCHhhEEeCCCCCCHHHHHHHHHHHHHHHhc----------CCCCCCEEEECCcCCCceeecCCCCcccccccC
Confidence 9999999999999999887899999999999997652 2578999999999999999999999876 4555
Q ss_pred ceEEEec--CCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCcccccccccccCCeEEEEe
Q 024870 174 QWVAWVS--SNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRLPAQLVSPKDGKLVWFA 243 (261)
Q Consensus 174 ~~~~~~~--~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~Pas~l~~~~~~v~~~~ 243 (261)
.+++.+. +++|++|||||++.|++||+|+|+++|++|+++++++++++++ .++|+++++...++++||.
T Consensus 149 ~~v~~~~~~~~~p~~RiTlt~~~i~~a~~i~ll~~G~~K~~~l~~~l~~~~~-~~~Pas~l~~~~~~~~w~~ 219 (219)
T cd01400 149 RLVVAVTDSPKPPPERITLTLPVLNNARRVVFLVTGAEKAEALKRALAGPDP-EELPAARVLPRPGEVLWFL 219 (219)
T ss_pred ceEEEEeCCCCCCCccEEecHHHHhcCCeEEEEEeChhHHHHHHHHHcCCCC-CCCChhhhcCCCCcEEEeC
Confidence 6777665 5578999999999999999999999999999999999998763 6899999994336788874
No 7
>TIGR00502 nagB glucosamine-6-phosphate isomerase. The set of proteins recognized by this model includes a closely related pair from Bacillus subtilis, one of which is uncharacterized but included as a member of the orthologous set.
Probab=100.00 E-value=2.8e-60 Score=420.72 Aligned_cols=231 Identities=17% Similarity=0.197 Sum_probs=206.5
Q ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHH-HHHhcCcEEEEEcCCCcHHHHHHhhCCCC-CCCCCCCcEEEEEecccc-cCCC
Q 024870 6 PELRLFDSCEELDSCLADYVYQISEA-AIRERGSFSLVLSGGDMPNRLGKLTRPPF-LRTVDWSKWHVFWAEENV-VPKR 82 (261)
Q Consensus 6 ~~i~i~~~~~~l~~~~A~~i~~~i~~-~i~~~~~~~l~lsGG~tp~~l~~~L~~~~-~~~i~w~~v~~f~~DEr~-vp~~ 82 (261)
|+|++|+|.+++++.+|+.|.+.+++ .+++++.|+|+||||+||+.+|+.|++.+ .+.++|+||+|||+|||+ ||++
T Consensus 1 m~i~~~~~~~~l~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstP~~~y~~L~~~~~~~~i~w~~v~~f~~DEr~~vp~~ 80 (259)
T TIGR00502 1 MRLIILQTYEELSKWAARHIANRINEFKPTAARPFVLGLPTGGTPIGTYKQLIELHQAGKISFQNVTTFNMDEYAGLSEE 80 (259)
T ss_pred CeEEEECCHHHHHHHHHHHHHHHHHHhCccccCceEEEEcCCCChHHHHHHHHHHhhccCCchhHeEEEeCeecCCCCCC
Confidence 68999999999999999999999999 55668999999999999999999998653 568999999999999997 9999
Q ss_pred CchhHHHHHHHHhcCCCCCCCCcEEcCCCC-CCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCcccc
Q 024870 83 HPDSFYRQAQEAFISKVPILPAHVIPVSHG-VPGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVAS 161 (261)
Q Consensus 83 ~~~Sn~~~~~~~ll~~~~ip~~~i~~~~~~-~~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~as 161 (261)
|++||+++++++||+++++|++|+|++++. .+++++|++|++.|++ .++||+++||||+||||||
T Consensus 81 ~~~Sn~~~~~~~l~~~~~i~~~~i~~~~~~~~~~~~~a~~y~~~i~~--------------~~~~Dl~llG~G~DGH~As 146 (259)
T TIGR00502 81 HPESYHSFMHNNFFQHIDIKPENINILNGNAPDLEAECRRYEEKIRS--------------YGGIDLFMGGIGPDGHIAF 146 (259)
T ss_pred chHHHHHHHHHHhcccCCCCHHHEecCCCCccCHHHHHHHHHHHHHH--------------cCCCCEEEEccCCCCceec
Confidence 999999999999999999999999999975 5899999999999986 6689999999999999999
Q ss_pred cCCCCCCCCCCCceEEE-------------ec-CCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCccc
Q 024870 162 IYPNNPVLQEDSQWVAW-------------VS-SNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRL 227 (261)
Q Consensus 162 lfP~~~~l~~~~~~~~~-------------~~-~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~ 227 (261)
|||+++... .++.+.. .+ +.+|++|||||++.|++|++|+|+++|++|++++++++.++.+ ..+
T Consensus 147 ~fP~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~p~~riTlt~~~i~~a~~vi~~~~G~~Ka~al~~al~~~~~-~~~ 224 (259)
T TIGR00502 147 NEPGSSLTS-RTRIKTLTEDTIQANSRFFEGDVNQVPKYALTVGIGTILDSKEVLILVSGHQKALALQKAVEGGVN-HMW 224 (259)
T ss_pred CCCCCCCCC-ceEEEEcchhhHHHHhhhhcCCCCCCCCceEecCHHHHhhCCEEEEEEcCHHHHHHHHHHHcCCCC-Ccc
Confidence 999986433 2222221 11 4567889999999999999999999999999999999998875 689
Q ss_pred ccccccccCCeEEEEecHHHHhcccc
Q 024870 228 PAQLVSPKDGKLVWFADASAASFFLR 253 (261)
Q Consensus 228 Pas~l~~~~~~v~~~~D~~Aa~~l~~ 253 (261)
||++++ .|++++||+|++||++|..
T Consensus 225 Pas~l~-~~~~~~~~~d~~Aa~~l~~ 249 (259)
T TIGR00502 225 TISALQ-LHKHAIVVCDENATQELKV 249 (259)
T ss_pred chHHhc-cCCCEEEEEcHHHHhhhhH
Confidence 999999 5889999999999998854
No 8
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=100.00 E-value=5.4e-60 Score=412.42 Aligned_cols=220 Identities=16% Similarity=0.198 Sum_probs=194.6
Q ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCC-CCCCCCCcEEEEEeccc-ccCCCC
Q 024870 6 PELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPF-LRTVDWSKWHVFWAEEN-VVPKRH 83 (261)
Q Consensus 6 ~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~-~~~i~w~~v~~f~~DEr-~vp~~~ 83 (261)
|++++|+|.+++++.+|++|.+. +++++.++|+||||+||+.+|+.|++.+ .++++|+||+|||+||| +||++|
T Consensus 1 m~i~i~~~~~~~~~~~a~~i~~~----i~~~~~~~l~lsgGstP~~~y~~L~~~~~~~~l~w~~v~~f~~DE~v~vp~~~ 76 (232)
T PRK09762 1 QTLQQVENYTALSERASEYLLAV----IRSKPDAVICLATGATPLLTYHYLVEKIHQQQVDVSQLTFVKLDEWVDLPLTM 76 (232)
T ss_pred CeEEEECCHHHHHHHHHHHHHHH----HHHCCCeEEEECCCCCHHHHHHHHHHHHhhcCCCHHHeEEEcCcEEecCCCCc
Confidence 68999999999999999999954 5568999999999999999999999653 45899999999999999 599999
Q ss_pred chhHHHHHHHHhcCCCCCCCCcEEcCCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCcccccC
Q 024870 84 PDSFYRQAQEAFISKVPILPAHVIPVSHGVPGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVASIY 163 (261)
Q Consensus 84 ~~Sn~~~~~~~ll~~~~ip~~~i~~~~~~~~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~aslf 163 (261)
++||+++++++||+++++|++|+|++++..+++++|.+|++.|++ .|+||+++||||+||||||||
T Consensus 77 ~~Sn~~~~~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~y~~~i~~--------------~~~~Dl~lLGmG~DGH~A~n~ 142 (232)
T PRK09762 77 PGTCETFLQQHIVQPLGLREDQLISFRSEEINETECERVTNLIAR--------------KGGLDLCVLGLGKNGHLGLNE 142 (232)
T ss_pred cHHHHHHHHHHhcCCCCCCHHHEECCCCCcccHHHHHHHHHHHHh--------------cCCCCEEEEccCCCCceecCC
Confidence 999999999999999999999999998776568899999999985 678999999999999999888
Q ss_pred CCCCCCCC--------CCceEEEec--CCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCccccccccc
Q 024870 164 PNNPVLQE--------DSQWVAWVS--SNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRLPAQLVS 233 (261)
Q Consensus 164 P~~~~l~~--------~~~~~~~~~--~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~Pas~l~ 233 (261)
|++++... .++++.... +++|++|||||++.|++||+|+|+++|++|+++++++++++++ ..+||++++
T Consensus 143 P~~slfp~~~~~~l~~~~~~~~~~~~~~~~p~~riTlt~~~i~~A~~i~llv~G~~Ka~~l~~~l~~~~~-~~~Pas~l~ 221 (232)
T PRK09762 143 PGESLQPACHISQLDARTQQHEMLKTAGRPVTRGITLGLKDILNAREVLLLVTGEGKQDATERFLTAKVS-TAIPASFLW 221 (232)
T ss_pred CCCCCCCCceeeeccHhhhhhhccCCCCCCCCccEEeCHHHHHhcCEEEEEEeCHHHHHHHHHHHcCCCC-CcccHHHHh
Confidence 88654332 223322221 6788999999999999999999999999999999999998875 689999999
Q ss_pred ccCCeEEEEecH
Q 024870 234 PKDGKLVWFADA 245 (261)
Q Consensus 234 ~~~~~v~~~~D~ 245 (261)
.|+++++++|+
T Consensus 222 -~h~~~~~~~d~ 232 (232)
T PRK09762 222 -LHSNFICLIDR 232 (232)
T ss_pred -hCCCEEEEecC
Confidence 68999999995
No 9
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=100.00 E-value=7e-58 Score=400.87 Aligned_cols=219 Identities=16% Similarity=0.218 Sum_probs=192.9
Q ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCC---C
Q 024870 6 PELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPK---R 82 (261)
Q Consensus 6 ~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~---~ 82 (261)
|+|++|+|.+++++++|+.|.+. +++++.++|+||||+||..+|+.|++.+...++|+||+|||+|| ||. +
T Consensus 1 m~i~i~~~~~e~~~~~a~~i~~~----i~~~~~~~l~lsgG~tp~~~y~~L~~~~~~~~~w~~v~~f~~DE--v~~~~~~ 74 (239)
T PRK12358 1 MKIIITKDYEEMSRVAAHHLLGY----MSKTKRVNLAITAGSTPKGMYEYLITLVKGKAWYDNVHYYNFDE--IPFRGKE 74 (239)
T ss_pred CeEEEECCHHHHHHHHHHHHHHH----HHhCCCeEEEECCCCCHHHHHHHHHHHHhcCCCHHHcEEEeccc--cCCCCcc
Confidence 68999999999999999999955 45689999999999999999999987554456799999999999 565 4
Q ss_pred CchhHHHHHHHHhcCCCCCCCCcEEcCCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCccccc
Q 024870 83 HPDSFYRQAQEAFISKVPILPAHVIPVSHGVPGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVASI 162 (261)
Q Consensus 83 ~~~Sn~~~~~~~ll~~~~ip~~~i~~~~~~~~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~asl 162 (261)
+.+||++++|++||++++||++|+|++++ ++|++|++.|++ .|+||+++||||+|||||||
T Consensus 75 ~~~s~~~~~~~~l~~~~~i~~~~~~~~~~-----~~~~~y~~~i~~--------------~~~~Dl~lLG~G~DGH~As~ 135 (239)
T PRK12358 75 GEGVTITNLRNLFFTPAGIKEENIHKLTI-----DNYREHDQKLAR--------------DGGLDLVVLGLGADGHFCGN 135 (239)
T ss_pred ccccHHHHHHHHhcCcCCCCHHHeeCCCH-----HHHHHHHHHHHh--------------cCCCCEEEEccCCCCceeec
Confidence 45689999999999999999999999985 368999999985 67899999999999999999
Q ss_pred CCCCCCCCCCCceEEEe--------------c-CCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCccc
Q 024870 163 YPNNPVLQEDSQWVAWV--------------S-SNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRL 227 (261)
Q Consensus 163 fP~~~~l~~~~~~~~~~--------------~-~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~ 227 (261)
|||++.+.+..+.+... . +.+|++|||||++.|++||+|+|+++|++|+++++++++++++ .++
T Consensus 136 fPg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~P~~riTlt~~~i~~A~~i~ll~~G~~Ka~~l~~~l~~~~~-~~~ 214 (239)
T PRK12358 136 LPGTTHFHDETVEVPIQGEMVDIVAHGELGGDFSLVPDSYVTMGPKSIMAAKNLLLIVNGKGKAQILKKVLQGPVT-EDV 214 (239)
T ss_pred CCCCCcCCCceEEEECcHHHHHHhhhhhccCCcccCCCeeEEcchHHHHhCCEEEEEEeCHHHHHHHHHHHcCCCC-CCc
Confidence 99987665544443222 1 6778899999999999999999999999999999999998874 789
Q ss_pred ccccccccCCeEEEEecHHHHhcc
Q 024870 228 PAQLVSPKDGKLVWFADASAASFF 251 (261)
Q Consensus 228 Pas~l~~~~~~v~~~~D~~Aa~~l 251 (261)
||++++ .|++++||+|++|+++|
T Consensus 215 Pas~l~-~h~~~~~~~D~~aa~~l 237 (239)
T PRK12358 215 PASILQ-LHPNLTVILDEAAAAEL 237 (239)
T ss_pred CcHHhc-cCCCEEEEECHHHHhhc
Confidence 999999 58999999999999876
No 10
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=100.00 E-value=1.4e-56 Score=438.38 Aligned_cols=233 Identities=18% Similarity=0.203 Sum_probs=211.8
Q ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCC-CCCCCCCcEEEEEecccc-cCC
Q 024870 4 REPELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPF-LRTVDWSKWHVFWAEENV-VPK 81 (261)
Q Consensus 4 ~~~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~-~~~i~w~~v~~f~~DEr~-vp~ 81 (261)
-+|++++|+|.+++++.+|+.|++.|++.+++++.++|+||||+||..+|+.|++.+ .+.++|+||+|||+|||| ||+
T Consensus 26 ~~i~~~if~~~ee~a~~vA~~I~~~I~~~~~~~~~~~laLsGGsTP~~~Y~~L~~~~~~~~l~w~~V~~F~~DEr~~vp~ 105 (652)
T PRK02122 26 EKIPTDIFESSEEASRAVAQEIATLIRERQAEGKPCVLGLATGSSPIGVYAELIRMHREEGLSFKNVITFNLDEYYPMQP 105 (652)
T ss_pred cceEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCcCHHHHHHHHHhhhhccCCCchheEEEeCeeccCCCC
Confidence 358899999999999999999999999999999999999999999999999999764 568999999999999999 999
Q ss_pred CCchhHHHHHHHHhcCCCCCCCCcEEcCCCC---CCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCc
Q 024870 82 RHPDSFYRQAQEAFISKVPILPAHVIPVSHG---VPGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCD 158 (261)
Q Consensus 82 ~~~~Sn~~~~~~~ll~~~~ip~~~i~~~~~~---~~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH 158 (261)
+|++||+++|+++||++++||++|+|.+++. .+++++|++|++.|++ .++||++|||||+|||
T Consensus 106 d~~~Sn~~~~re~L~~~i~Ip~~ni~~~dg~~~~~~~~~~~~~Ye~~I~~--------------~gg~DlvLLGiG~DGH 171 (652)
T PRK02122 106 DSLQSYHRFMKENLFDHVDIPPENIHIPDGTIPKEEIDEYCRDYEEKIEA--------------AGGIDFQLLGIGRTGH 171 (652)
T ss_pred CcHHHHHHHHHHHhhccCCCCHHHeecCCCccCcCCHHHHHHHHHHHHHh--------------hCCCcEEEeCCCCCCc
Confidence 9999999999999999999999999999875 3789999999999986 6789999999999999
Q ss_pred ccccCCCCCCCCCCCceEE---------Ee---c-CCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCc
Q 024870 159 VASIYPNNPVLQEDSQWVA---------WV---S-SNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNR 225 (261)
Q Consensus 159 ~aslfP~~~~l~~~~~~~~---------~~---~-~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~ 225 (261)
|||||||++..+ .++.+. .. . +.+|++|||||++.|++||+|+|+++|++|+++|+++++++++ .
T Consensus 172 iAsnfPgs~~~s-~tr~v~l~~~tr~~aa~~f~~~~~~P~~rITmgi~~I~~Ar~Iilla~G~~Ka~iv~~~l~g~~~-~ 249 (652)
T PRK02122 172 IGFNEPGSGRNS-RTRLVTLDHITRRDAASDFFGEENVPRKAITMGVGTILKARRIVLLAWGEHKAPIIKRAVEGEIS-D 249 (652)
T ss_pred eeccCCCCcccc-cceEEEccchhhhhhccccCCCCCCCCceEEeCHHHHHhhCeEEEEEeCHHHHHHHHHHHhCCCC-C
Confidence 999999997533 233221 11 1 6788999999999999999999999999999999999999874 7
Q ss_pred ccccccccccCCeEEEEecHHHHhcccc
Q 024870 226 RLPAQLVSPKDGKLVWFADASAASFFLR 253 (261)
Q Consensus 226 ~~Pas~l~~~~~~v~~~~D~~Aa~~l~~ 253 (261)
.+||++|+ .|++++||+|++||+.|.+
T Consensus 250 ~~PAs~Lq-~h~~~~~~lD~~AA~~Ltr 276 (652)
T PRK02122 250 EVPASYLQ-EHPNATFVLDLAAASELTR 276 (652)
T ss_pred ccchHHhc-cCCCEEEEEcHHHhhhccc
Confidence 89999999 6899999999999999865
No 11
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=100.00 E-value=3.1e-57 Score=386.64 Aligned_cols=195 Identities=34% Similarity=0.568 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCchhHHHHHHHHhc
Q 024870 17 LDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPDSFYRQAQEAFI 96 (261)
Q Consensus 17 l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~~~~~ll 96 (261)
|++++|++|++.+++.+++++.++|+||||+||+.+|+.|++..+..++|+||+||++|||+||++|++||+++++++||
T Consensus 1 la~~~a~~i~~~i~~~i~~~~~~~i~LsgGstp~~~y~~L~~~~~~~i~w~~v~~~~~DEr~v~~~~~~Sn~~~~~~~l~ 80 (199)
T PF01182_consen 1 LAQAVAEAIAEAIEEAIAERGRAVIALSGGSTPKPLYQELAKLHKERIDWSRVHFFNVDERVVPPDDPDSNYRMLREHLL 80 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSEEEEE--SCTHHHHHHHHHHHHHTCSCGGGEEEEESEEESSTTTSTTSHHHHHHHHTG
T ss_pred CHHHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhhhccccCChhHeEEEeCcccccCCCCCccHHHHHHHHhh
Confidence 67899999999999999999999999999999999999998753347999999999999999999999999999999999
Q ss_pred CCCCCCCCcEEcCCC-CCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCcccccCCCCCCCC-CCCc
Q 024870 97 SKVPILPAHVIPVSH-GVPGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVASIYPNNPVLQ-EDSQ 174 (261)
Q Consensus 97 ~~~~ip~~~i~~~~~-~~~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~aslfP~~~~l~-~~~~ 174 (261)
++++||++|||++++ ..+++++|++|++.|.+.++... .|+||+++||||+||||||||||++.+. ++++
T Consensus 81 ~~~~i~~~~i~~~~~~~~~~~~~~~~y~~~l~~~~~~~~--------~p~~Dl~lLG~G~DGH~aslfPg~~~~~~~~~~ 152 (199)
T PF01182_consen 81 DPLPIPPENIHPIDGEADDPEEAAERYEQELASLGGEAG--------FPGFDLVLLGMGEDGHTASLFPGSPALLEESER 152 (199)
T ss_dssp GGSGGGGGGEETSSTTTSSHHHHHHHHHHHHHHHSSSEE--------CESBSEEEEE--TTS-BTTB-TTCHTTHHHHSS
T ss_pred ccCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHhccccC--------CCceeEEEeccccCCCeeccCCCCccccccccc
Confidence 999999999999996 57999999999999998655321 4569999999999999999999998854 3333
Q ss_pred eEEEec--CCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhc
Q 024870 175 WVAWVS--SNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMM 219 (261)
Q Consensus 175 ~~~~~~--~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~ 219 (261)
++..+. +++|++|||||++.|++||+|+|+++|++|+++|+++|+
T Consensus 153 ~~~~~~~~~~~p~~riTlt~~~i~~a~~i~~l~~G~~Ka~~v~~~l~ 199 (199)
T PF01182_consen 153 WVVAVTDSPKPPPQRITLTLPTIMSARKIVLLATGEEKAEAVKRALQ 199 (199)
T ss_dssp SSEEEECCTTSSSEEEEE-HHHHHTSSEEEEEEESGGGHHHHHHHH-
T ss_pred eEEEecCCCCCCcceEEeCHHHHHhcCEEEEEEeCHHHHHHHHHHhC
Confidence 444433 889999999999999999999999999999999999985
No 12
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=100.00 E-value=4.4e-49 Score=349.00 Aligned_cols=235 Identities=21% Similarity=0.263 Sum_probs=205.3
Q ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCc-EEEEEcCCCcHHHHHHhhCCCC-CCCCCCCcEEEEEecccc-cCCC
Q 024870 6 PELRLFDSCEELDSCLADYVYQISEAAIRERGS-FSLVLSGGDMPNRLGKLTRPPF-LRTVDWSKWHVFWAEENV-VPKR 82 (261)
Q Consensus 6 ~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~-~~l~lsGG~tp~~l~~~L~~~~-~~~i~w~~v~~f~~DEr~-vp~~ 82 (261)
|++++|+|.+++++.+|++|.+.+++++++++. .+||||||+||..+|+.|.+.+ ...++|++|+||++|||+ ||.+
T Consensus 1 m~~~~~~~~~~l~~~aa~~l~~~l~~~~~~~~~~~~iglsgG~T~~~~~~~L~~~~~~~~~~~~~v~v~~~DEr~gv~~~ 80 (261)
T PRK00443 1 MRLIILKTAEEVGKWAARHIANRINAFLPTKERPFVLGLATGSSPLETYKALIELHKAGKVDFSRVTTFNLDEYVGLPAD 80 (261)
T ss_pred CeEEEECCHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCCCHHHHHHHHHHHhhhcCCchHHeEEEeCceecCCCCC
Confidence 689999999999999999999999999998875 5688999999999999998432 457999999999999997 9999
Q ss_pred CchhHHHHHHHHhcCCCCCCCCcEEcCCCC-CCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCcccc
Q 024870 83 HPDSFYRQAQEAFISKVPILPAHVIPVSHG-VPGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVAS 161 (261)
Q Consensus 83 ~~~Sn~~~~~~~ll~~~~ip~~~i~~~~~~-~~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~as 161 (261)
|++||+.++++.|+++++++..++|++++. .++..++..|++.|++ .+++|+++||||+|||+||
T Consensus 81 ~~~s~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~--------------~~~~Dl~llGiG~dgh~as 146 (261)
T PRK00443 81 HPESYRYFMRENFFDHVDIPPENINLLNGNAPDPEAECRRYEEKIKS--------------AGGIDLQILGIGENGHIAF 146 (261)
T ss_pred ChHHHHHHHHHHHhccCCCCHHHeecCCCCCcCHHHHHHHHHHHHHH--------------cCCCCEEEEccCCCCcccc
Confidence 999999999999999999999999999765 5888999999999985 6689999999999999999
Q ss_pred cCCCCCCCCCCC-------------ceEEEecCCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCcccc
Q 024870 162 IYPNNPVLQEDS-------------QWVAWVSSNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRLP 228 (261)
Q Consensus 162 lfP~~~~l~~~~-------------~~~~~~~~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~P 228 (261)
|||++....+.. +++..-.+..|.+|||||++.|++|++++++++|++|+++++.+|.+..+ .++|
T Consensus 147 lfp~~~~~~~~~~~~l~~~~~~~~~~~~d~~g~~~~~~~itl~l~~L~~a~~vi~~a~G~~K~~ai~~al~~~~~-~~~P 225 (261)
T PRK00443 147 NEPGSSFASRTRIKTLTEDTRIANSRFFDGDIEQVPKYALTVGVGTILDAKEIMLLAPGHNKAEAVKAAVEGPVN-HMWP 225 (261)
T ss_pred cCCCCCCCCCeEEEEccHhhHHHHHhhcCCCccCCCCeeEEcCHHHHHhcCeEEEEecChHHHHHHHHHHhCCCC-CCcc
Confidence 999986432210 01110004567889999999999999999999999999999999998875 6899
Q ss_pred cccccccCCeEEEEecHHHHhccccCCC
Q 024870 229 AQLVSPKDGKLVWFADASAASFFLRGSG 256 (261)
Q Consensus 229 as~l~~~~~~v~~~~D~~Aa~~l~~~~~ 256 (261)
+++++ .|++++||+|++||+.|..+++
T Consensus 226 a~~l~-~~~~~~~~~d~~aa~~l~~~~~ 252 (261)
T PRK00443 226 ASILQ-LHPKATLVLDEAAASELKVKTV 252 (261)
T ss_pred hHHHh-hCCCEEEEEcHHHHhHHHHHHH
Confidence 99999 5899999999999999876543
No 13
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=100.00 E-value=3.5e-46 Score=324.47 Aligned_cols=215 Identities=20% Similarity=0.279 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCC-CCCCCCCCcEEEEEecccc-cCCCCchhHHHHHHH
Q 024870 16 ELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPP-FLRTVDWSKWHVFWAEENV-VPKRHPDSFYRQAQE 93 (261)
Q Consensus 16 ~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~-~~~~i~w~~v~~f~~DEr~-vp~~~~~Sn~~~~~~ 93 (261)
++++.+|+++. +.+++++.++|+||||+||..+|+.|... .+..++|++|+||++|||+ ||.+|++||++++++
T Consensus 2 ~~~~~~a~~l~----~~i~~~~~~~i~lsgG~T~~~~~~~l~~~~~~~~~~~~~v~v~~~der~~v~~~~~~sn~~~~~~ 77 (232)
T cd01399 2 EMSEAAAELIA----ELIREKPPAVLGLATGSTPLGVYEELIELHKEGGLSFSNVTTFNLDEYVGLPPDHPQSYHYFMRE 77 (232)
T ss_pred hHHHHHHHHHH----HHHHhCCCcEEEEcCCCCHHHHHHHHHHHHHhcCCcHHHeEEEeCceecCCCCCcchhHHHHHHH
Confidence 45555666655 66777899999999999999999999754 3457999999999999999 999999999999999
Q ss_pred HhcCCCCCCCCcEEcCCCC-CCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCcccccCCCCCCCCCC
Q 024870 94 AFISKVPILPAHVIPVSHG-VPGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVASIYPNNPVLQED 172 (261)
Q Consensus 94 ~ll~~~~ip~~~i~~~~~~-~~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~aslfP~~~~l~~~ 172 (261)
.|++++++|..|+|+++++ .++.+++..|++.|++ .++||+++||||+|||+|||||++....+.
T Consensus 78 ~l~~~~~~~~~~i~~p~~~~~~~~~~~~~~~~~l~~--------------~~~~Dl~llGiG~dgh~as~~p~~~~~~~~ 143 (232)
T cd01399 78 NLFDHIDIKPENIHIPDGNAADLEAECRRYEALIAE--------------AGGIDLQLLGIGENGHIGFNEPGSSLDSRT 143 (232)
T ss_pred HhhccCCCCHHHEecCCCCccCHHHHHHHHHHHHHH--------------cCCCCEEEECCCCCceeeecCCCCCCCCce
Confidence 9999999999999999765 4788899999999985 568999999999999999999998655332
Q ss_pred CceEE-----------Eec--CCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCcccccccccccCCeE
Q 024870 173 SQWVA-----------WVS--SNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRLPAQLVSPKDGKL 239 (261)
Q Consensus 173 ~~~~~-----------~~~--~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~Pas~l~~~~~~v 239 (261)
. ... ..+ +..|.+|||||++.|+++++++++++|++|+++++.++.+..+ .++|+++++ .|+++
T Consensus 144 ~-~~~l~~~~~~~~~~~~~~~~~~~~~~itltl~~l~~a~~vi~~a~G~~K~~ai~~al~~~~~-~~~P~~~l~-~~~~~ 220 (232)
T cd01399 144 R-VVTLDESTRQANARFFDGDEDVPTQAITMGIGTIMKAKEILLLATGEGKAEAVKKALEGPVT-EECPASILQ-LHPNV 220 (232)
T ss_pred E-EEECCHHhHHHHhhhcCCcCCCCCceEecCHHHHhhCCEEEEEeCChHHHHHHHHHHhCCCC-CCcchHHHh-hCCCe
Confidence 1 110 111 4677889999999999999999999999999999999998875 689999999 58899
Q ss_pred EEEecHHHHhcc
Q 024870 240 VWFADASAASFF 251 (261)
Q Consensus 240 ~~~~D~~Aa~~l 251 (261)
+||+|++||+.|
T Consensus 221 ~~~~d~~aa~~~ 232 (232)
T cd01399 221 TVILDEAAASEL 232 (232)
T ss_pred EEEEcHHHhccC
Confidence 999999999764
No 14
>KOG3148 consensus Glucosamine-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.4e-45 Score=300.10 Aligned_cols=234 Identities=16% Similarity=0.238 Sum_probs=211.0
Q ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHHHHHhc-CcEEEEEcCCCcHHHHHHhhCCCC-CCCCCCCcEEEEEecccc-cCCC
Q 024870 6 PELRLFDSCEELDSCLADYVYQISEAAIRER-GSFSLVLSGGDMPNRLGKLTRPPF-LRTVDWSKWHVFWAEENV-VPKR 82 (261)
Q Consensus 6 ~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~-~~~~l~lsGG~tp~~l~~~L~~~~-~~~i~w~~v~~f~~DEr~-vp~~ 82 (261)
|++++.++++.+++++|+++...|.+..... +.|+++|++||||..+|+.|.+.+ ++.++|+.|..|++|||+ +|.|
T Consensus 1 mkliile~~d~~~ewaakyv~~ri~~f~p~~dkyf~lglptgstplg~ykklie~~k~g~~sf~yvktfnmdeyvglprd 80 (273)
T KOG3148|consen 1 MKLIILENYDKVSEWAAKYVVNRINQFTPGGDKYFVLGLPTGSTPLGMYKKLIEFYKNGVLSFKYVKTFNMDEYVGLPRD 80 (273)
T ss_pred CcEEEeechhHHHHHHHHHHHHHHhhcCCCCceEEEEecCCCCCchhHHHHHHHHHhcCceEEEEEeeecchhhcCCCCC
Confidence 6899999999999999999999988765433 679999999999999999999876 788999999999999999 9999
Q ss_pred CchhHHHHHHHHhcCCCCCCCCcEEcCCCC-CCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCcccc
Q 024870 83 HPDSFYRQAQEAFISKVPILPAHVIPVSHG-VPGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVAS 161 (261)
Q Consensus 83 ~~~Sn~~~~~~~ll~~~~ip~~~i~~~~~~-~~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~as 161 (261)
|++|+..+|..+||++++|.++|+|.+|+. .|.+.+|+.||++|++ .|++||-+-|||+||||||
T Consensus 81 h~esyhsfmwnnffkhidi~p~n~hildgna~dl~aec~~fe~kike--------------aggidlfvggigpdghiaf 146 (273)
T KOG3148|consen 81 HPESYHSFMWNNFFKHIDINPANIHILDGNAADLQAECDAFERKIKE--------------AGGIDLFVGGIGPDGHIAF 146 (273)
T ss_pred ChhHHHHHHHHhhhhhcccCcccceeecCchHHHHHHHHHHHHHHHh--------------cCCeEEEeeccCCCCceee
Confidence 999999999999999999999999999997 4999999999999996 7899999999999999999
Q ss_pred cCCCCCCCCCC-------------CceEEEecCCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCcccc
Q 024870 162 IYPNNPVLQED-------------SQWVAWVSSNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRLP 228 (261)
Q Consensus 162 lfP~~~~l~~~-------------~~~~~~~~~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~P 228 (261)
|+||+++.+.+ .+++..--.++|.+++|+|..+.|.||.|.+|++|++|+-++.++++...+ ..+-
T Consensus 147 nepgsslvsrtrvktla~dti~anarffdgd~tkvpt~altvgvgtvmdarevmilitgahkafalykaieegvn-hmwt 225 (273)
T KOG3148|consen 147 NEPGSSLVSRTRVKTLAMDTILANARFFDGDLTKVPTQALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVN-HMWT 225 (273)
T ss_pred CCCcchhhhhhhHHHHhHHHHHhhceecCCccccCccceeEeeeeeeeecceEEEEEeccHHHHHHHHHHHhccc-ceee
Confidence 99999876642 122221117899999999999999999999999999999999999998885 7899
Q ss_pred cccccccCCeEEEEecHHHHhccccCC
Q 024870 229 AQLVSPKDGKLVWFADASAASFFLRGS 255 (261)
Q Consensus 229 as~l~~~~~~v~~~~D~~Aa~~l~~~~ 255 (261)
+|.+| +|++.++++|++|.-.|..++
T Consensus 226 vsafq-qh~~t~ficdedatlelkvkt 251 (273)
T KOG3148|consen 226 VSAFQ-QHPRTTFICDEDATLELKVKT 251 (273)
T ss_pred hhhHh-hCCceEEEecCCceeEEEeee
Confidence 99999 899999999999988776553
No 15
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=100.00 E-value=9e-42 Score=284.30 Aligned_cols=168 Identities=20% Similarity=0.168 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCchhHHHHHHHHhcCC
Q 024870 19 SCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPDSFYRQAQEAFISK 98 (261)
Q Consensus 19 ~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~~~~~ll~~ 98 (261)
+.+|++|++.+++.+++++.++|+||||+||..+|+.|++..... +|+||+||++||||||.+|++||+++++++|+++
T Consensus 2 ~~~a~~i~~~i~~~~~~~~~~~i~lsgGsTp~~~y~~L~~~~~~~-~w~~v~~f~~DEr~v~~~~~~Sn~~~~~~~ll~~ 80 (169)
T cd00458 2 KEALKFIEDKXEKLLEEKDDMVIGLGTGSTPAYFYKLLGEKLKRG-EISDIVGFPTDERYVPLDSDQSNFRQAKLLAFEH 80 (169)
T ss_pred hHHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHhhhhhC-CccceEEEECccccCCCCCchHHHHHHHHHhhcc
Confidence 578889999999999999999999999999999999998764223 8999999999999999999999999999999999
Q ss_pred CCCCCCcEEcCCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCcccccCCCCCCCCCCCceEEE
Q 024870 99 VPILPAHVIPVSHGVPGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVASIYPNNPVLQEDSQWVAW 178 (261)
Q Consensus 99 ~~ip~~~i~~~~~~~~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~aslfP~~~~l~~~~~~~~~ 178 (261)
+++|++|+|++++..++++++.+|++.+.+ ..|+||+++||||
T Consensus 81 ~~i~~~~v~~~~~~~~~~~~a~~y~~~~~~-------------~~~~~Dl~lLG~G------------------------ 123 (169)
T cd00458 81 DIIPASNVHYVDTSLPIEKACEKYEREILD-------------QVDAIDLAVDGAG------------------------ 123 (169)
T ss_pred CCCCHHHeecCCCCCCcHHHHHHHHHHHHh-------------hCCCCCEEEECcC------------------------
Confidence 999999999999887666777777775543 3678999999999
Q ss_pred ecCCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCcccccccccccCCeEEEEe
Q 024870 179 VSSNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRLPAQLVSPKDGKLVWFA 243 (261)
Q Consensus 179 ~~~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~Pas~l~~~~~~v~~~~ 243 (261)
++||+|+|+++|++|+++|+++++++++ ..+||+.++ .|++++||+
T Consensus 124 -----------------~~a~~i~~~~~G~~Ka~~l~~~~~~~~~-~~~Pas~l~-~~~~~~~~~ 169 (169)
T cd00458 124 -----------------YRAGTVIVLVDGRKKVDYLCQNTEPGVI-ENGIFADIR-GKEKDIVIV 169 (169)
T ss_pred -----------------ccccEEEEEecChhHHHHHHHHhcCCCC-CcCCHHHhc-cCCCeEEeC
Confidence 7899999999999999999999988764 689999999 589999985
No 16
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=97.85 E-value=0.00095 Score=61.06 Aligned_cols=206 Identities=15% Similarity=0.098 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCchhHHHHHHH
Q 024870 14 CEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPDSFYRQAQE 93 (261)
Q Consensus 14 ~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~~~~ 93 (261)
.+...+.++..-++.+.+.++... +|++++|+|-..+-+.+... +-+++.|..+=== +.+.+..-+...+-.
T Consensus 93 ~~~~~~~lg~aaA~~l~~~l~~gd--vigV~wGrTv~a~~~~l~~~-----~~~~~~vV~l~GG-~~~~~~~~~~~~~~~ 164 (321)
T COG2390 93 DDSILRRLGRAAAQYLESLLKPGD--VIGVGWGRTLSAVVDNLPPA-----PLRDVKVVQLTGG-VGHADGSYNANTIAL 164 (321)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCC--EEEEeccHHHHHHHHhcCcC-----ccCCeEEEECCCC-CCCCccccCHHHHHH
Confidence 344444455555555556665544 99999999999998888753 3466777664321 221122223333333
Q ss_pred HhcCCCCCCCCcEEcCCCCCCHHHHHHHH-HHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCccccc----CCCCCC
Q 024870 94 AFISKVPILPAHVIPVSHGVPGESAANNY-EFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVASI----YPNNPV 168 (261)
Q Consensus 94 ~ll~~~~ip~~~i~~~~~~~~~~~~a~~y-~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~asl----fP~~~~ 168 (261)
.+=++++-+...++.+.-..+++...... +..+++.+.. ....|+++.|+|.=.--+.+ |.....
T Consensus 165 ~~A~k~~~~~~~l~aP~~~~s~e~r~~l~~e~~v~~vl~~----------~~~ad~alvGIG~~~~~~~~~~~g~~~~~~ 234 (321)
T COG2390 165 RLAEKLGAESYLLPAPLVASSPELREALLQEPSVREVLDL----------ARSADLALVGIGSLSANSTLVRSGFIYEEE 234 (321)
T ss_pred HHHHHhCCcEEeeecCccCCCHHHHHHHHhCcHHHHHHHH----------HHhCCEEEEecCCCcccchhhhhcCCCHHH
Confidence 34444543222333322223443322222 3344544443 23589999999864322211 111111
Q ss_pred CCC----------CCceEEEec--CCCC--CCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCcccccccccc
Q 024870 169 LQE----------DSQWVAWVS--SNAP--RESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRLPAQLVSP 234 (261)
Q Consensus 169 l~~----------~~~~~~~~~--~~~p--~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~Pas~l~~ 234 (261)
+.. ..+++..-. ...| .+-|.+++..|-+.++++.++.|.+|++++..+|.+..
T Consensus 235 ~~~l~~~gaVGdi~g~ffD~~G~~~~~~ln~r~igl~L~~l~~ip~vI~vAgG~~K~~AI~aaL~gg~------------ 302 (321)
T COG2390 235 LEALLAKGAVGDILGRFFDANGQPVDTPLNDRVIGLSLDDLRQIPKVIAVAGGESKAEAILAALRGGY------------ 302 (321)
T ss_pred HHHHHhCCcceecccceecCCCCCccccccCceecCCHHHHhcCCcEEEEeCCcccHHHHHHHHhCCC------------
Confidence 000 011222111 1112 34689999999999999999999999999999999742
Q ss_pred cCCeEEEEecHHHHhccc
Q 024870 235 KDGKLVWFADASAASFFL 252 (261)
Q Consensus 235 ~~~~v~~~~D~~Aa~~l~ 252 (261)
--++++|+.+|..|-
T Consensus 303 ---~n~LITDe~tA~~lL 317 (321)
T COG2390 303 ---INVLITDEATAEALL 317 (321)
T ss_pred ---CCEEEeCHHHHHHHH
Confidence 134579999888763
No 17
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=97.76 E-value=7.6e-05 Score=66.15 Aligned_cols=199 Identities=16% Similarity=0.138 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCchhHHHHHHHH
Q 024870 15 EELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPDSFYRQAQEA 94 (261)
Q Consensus 15 ~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~~~~~ 94 (261)
++..+.+++..++.+.+.++. .-+|+++.|+|-..+-+.|.. ....++.|+.+===. +..+. .+...+-+.
T Consensus 32 ~~~~~~l~~~aA~~L~~~l~~--~~~iGv~wG~Tl~~~~~~l~~-----~~~~~~~vV~l~Gg~-~~~~~-~~~~~i~~~ 102 (255)
T PF04198_consen 32 EDILESLGEAAAEYLSELLKD--GDVIGVGWGRTLYAVANHLPP-----KSLPNVTVVPLIGGV-GNSNS-YQANEIARR 102 (255)
T ss_dssp HHHHHHHHHHHHHHHHHH--T--TEEEEE-TSHHHHHHHHTS-------SSSSCEEEEESBSBT-TTSSG-GSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCC--CCEEEEcchHHHHHHHHhcCc-----cCCCCcEEEECCCCC-CCCCC-cCHHHHHHH
Confidence 344555555555555555543 339999999998888887774 356788888753322 22222 222222222
Q ss_pred hcCCCCCCCCcEEcCCCC---CCHHH-HHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCcccccCCCCCCCC
Q 024870 95 FISKVPILPAHVIPVSHG---VPGES-AANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVASIYPNNPVLQ 170 (261)
Q Consensus 95 ll~~~~ip~~~i~~~~~~---~~~~~-~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~aslfP~~~~l~ 170 (261)
|=++++ .+.+.++.. .+++. ..-.=+..+++.+.. ....|++++|+|.=...+.++...- ++
T Consensus 103 lA~~~g---~~~~~l~aP~~~~s~~~~~~l~~~~~i~~~l~~----------~~~~dial~giG~~~~~~~~~~~~~-~~ 168 (255)
T PF04198_consen 103 LAEKLG---GKYYFLPAPAFVDSPELRDALLAEPSIREVLDL----------ARKADIALVGIGSPSSDSTLYRSGY-LS 168 (255)
T ss_dssp HHHHHT---SEEE---SBSB-SSHHHHHHHHTSHHHHHHHHH----------HCT-SEEEEEEEEHHHHHHHCHHTT-SC
T ss_pred HHHHhC---CcEEEEeCCccCCCHHHHHHHHhChHHHHHHHH----------HHhCCEEEEecCCCCCcchHHHhCC-CC
Confidence 333333 233333321 23333 222222345554443 3468999999998766555443221 11
Q ss_pred C---------------CCceEEE----ecCCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCccccccc
Q 024870 171 E---------------DSQWVAW----VSSNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRLPAQL 231 (261)
Q Consensus 171 ~---------------~~~~~~~----~~~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~Pas~ 231 (261)
+ ..+++.. +......+.|.+++..|.+.++++.++.|.+|.+++..+|.+..-
T Consensus 169 ~~~~~~l~~~gAVGdi~~~f~d~~G~~v~~~~~~r~igi~l~~L~~i~~~I~va~G~~K~~aI~aALr~g~i-------- 240 (255)
T PF04198_consen 169 EEEIEELREKGAVGDICGRFFDADGNIVDTPLNDRTIGISLEDLRKIPRVIAVAGGEEKAEAILAALRGGYI-------- 240 (255)
T ss_dssp HHHHHHHHHTTEEEEETTEEEETTS-EEEHGGGGGBSB--HHHHHTSSEEEEEE-SGGGHHHHHHHHHTTST--------
T ss_pred HHHHHHHHHCCcEEEhhchhhcCCCCCccCcCcCceeecCHHHHhCCCcEEEEcCchhhHHHHHHHHhcCCC--------
Confidence 1 0112210 101123457899999999999999999999999999999998431
Q ss_pred ccccCCeEEEEecHHHHhcc
Q 024870 232 VSPKDGKLVWFADASAASFF 251 (261)
Q Consensus 232 l~~~~~~v~~~~D~~Aa~~l 251 (261)
-++++|++.|..|
T Consensus 241 -------~~LItDe~tA~~l 253 (255)
T PF04198_consen 241 -------NVLITDESTARAL 253 (255)
T ss_dssp -------SEEEEEHHHHHHH
T ss_pred -------CEEEECHHHHHHH
Confidence 2457899988765
No 18
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=96.90 E-value=0.06 Score=49.29 Aligned_cols=51 Identities=20% Similarity=0.197 Sum_probs=43.5
Q ss_pred CeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCcccccccccccCCeEEEEecHHHHhcc
Q 024870 186 ESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRLPAQLVSPKDGKLVWFADASAASFF 251 (261)
Q Consensus 186 ~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~Pas~l~~~~~~v~~~~D~~Aa~~l 251 (261)
+.|.+++..|.+.++++.++.|.+|++++..+|.+..- -++++|+++|..|
T Consensus 263 r~igi~le~Lk~ip~~I~vA~G~~K~~Ai~aALrgg~i---------------~~LITDe~tA~~l 313 (318)
T PRK15418 263 ELIGLPLSSLKTIPTVIGVAGGEEKAEAIIAALKGGYI---------------NALVTDEKTARAI 313 (318)
T ss_pred ceecCCHHHHcCCCCEEEEecCHHHHHHHHHHHhcCCC---------------CEEEECHHHHHHH
Confidence 36899999999999999999999999999999998421 2458999988775
No 19
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=86.36 E-value=16 Score=30.58 Aligned_cols=121 Identities=15% Similarity=0.088 Sum_probs=79.7
Q ss_pred EEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCC---CCCCCCCcEEEEEecccccCCC--
Q 024870 8 LRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPF---LRTVDWSKWHVFWAEENVVPKR-- 82 (261)
Q Consensus 8 i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~---~~~i~w~~v~~f~~DEr~vp~~-- 82 (261)
..+|++.+++.+.++.+|. +.++.+.++.++.+...+...+-+.|.+.. ...++=.++.+....|.+++.+
T Consensus 23 c~~Y~~~~e~~~~~~~Fi~----~GL~~ge~~l~v~~~~~~~~~l~~~L~~~~~d~~~~~~~gqL~~~~~~~~Y~~~g~f 98 (191)
T PF14417_consen 23 CAFYDDEEELLEVLVPFIR----EGLARGERCLYVAPDPRRVEELRDELRKAGPDVEQYLDSGQLELLDAEEWYLPDGRF 98 (191)
T ss_pred EEEECCHHHHHHHHHHHHH----HHHHCCCeEEEEECCCCCHHHHHHHHHhcCCchhhcccCCCEEEecchhhhccCCCc
Confidence 3579999999998888888 677777777777765677777778885331 2345668899999988886665
Q ss_pred CchhHHHHHHHHhcCCCCCCCCcEEcC-CC---CCCHHHHHHHHHHHHHHhhhc
Q 024870 83 HPDSFYRQAQEAFISKVPILPAHVIPV-SH---GVPGESAANNYEFSIRQQVRK 132 (261)
Q Consensus 83 ~~~Sn~~~~~~~ll~~~~ip~~~i~~~-~~---~~~~~~~a~~y~~~i~~~~~~ 132 (261)
||+.-..++++.+.+.+.-.-..+..+ +. ..+..++..+||..+..++..
T Consensus 99 ~~~~~i~~~~~~~~~a~~~G~~~lRv~ge~~w~~~~~~~~l~~yE~~ln~~~~~ 152 (191)
T PF14417_consen 99 DPARMIAFWRAALEQALAEGYRGLRVIGEMTWALRSGWEELLRYEALLNRLFAE 152 (191)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCcEEEEEechhhccccHHHHHHHHHHHHHHhcC
Confidence 455666667766655442111222111 10 112455778999999987764
No 20
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=78.70 E-value=28 Score=30.84 Aligned_cols=110 Identities=16% Similarity=0.064 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhc----CcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCchhHHHHHHHHhcCCCC
Q 024870 25 VYQISEAAIRER----GSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPDSFYRQAQEAFISKVP 100 (261)
Q Consensus 25 i~~~i~~~i~~~----~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~~~~~ll~~~~ 100 (261)
+.+.+.+.+.+. .++.||||||.-=..+...|.+... . -++..+.+|+.+-+..+. .. ..-+.+-..++
T Consensus 6 ~~~~v~~~i~~~~~~~~~ilVavSGGkDS~~ll~~L~~l~~-~---~~~~a~~Vd~~~~~~~~~-~~--~~~~~~~~~~~ 78 (298)
T COG0037 6 LERKVKRAIREFNLIEYKILVAVSGGKDSLALLHLLKELGR-R---IEVEAVHVDHGLRGYSDQ-EA--ELVEKLCEKLG 78 (298)
T ss_pred HHHHHHHHHHhccccCCeEEEEeCCChHHHHHHHHHHHhcc-C---ceEEEEEecCCCCCccch-HH--HHHHHHHHHhC
Confidence 334444555544 6899999999765555555554311 1 578899999998654322 11 12222333444
Q ss_pred CCCCcEEcCCCC--------CCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEec
Q 024870 101 ILPAHVIPVSHG--------VPGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLT 152 (261)
Q Consensus 101 ip~~~i~~~~~~--------~~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG 152 (261)
+ +..+..+... .++...|......+-..... ..++|.+++|
T Consensus 79 ~-~~~v~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~----------~~g~~~i~tg 127 (298)
T COG0037 79 I-PLIVERVTDDLGRETLDGKSICAACRRLRRGLLYKIAK----------ELGADKIATG 127 (298)
T ss_pred C-ceEEEEEEeeccccccCCCChhHHHHHHHHHHHHHHHH----------HcCCCeEEec
Confidence 4 3333333221 14667776655433222221 2368999994
No 21
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=73.18 E-value=13 Score=31.02 Aligned_cols=45 Identities=11% Similarity=0.040 Sum_probs=32.7
Q ss_pred HHhcCcEEEEEcCCC-cHHHHHHhhCCCCCCCCCCCcEEEEEecccc
Q 024870 33 IRERGSFSLVLSGGD-MPNRLGKLTRPPFLRTVDWSKWHVFWAEENV 78 (261)
Q Consensus 33 i~~~~~~~l~lsGG~-tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~ 78 (261)
+-+...+.|+|+||. |-..+++.+.-.. -.+-.+.+.+++.+.+|
T Consensus 93 m~~~sda~I~lPGG~GTL~El~e~~~~~q-lg~~~kPiil~n~~g~~ 138 (178)
T TIGR00730 93 MAELADAFIAMPGGFGTLEELFEVLTWAQ-LGIHQKPIILFNVNGHF 138 (178)
T ss_pred HHHhCCEEEEcCCCcchHHHHHHHHHHHH-cCCCCCCEEEECCcchH
Confidence 346789999999995 7777887764211 02445789999999988
No 22
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=68.77 E-value=2.6 Score=33.34 Aligned_cols=53 Identities=13% Similarity=-0.014 Sum_probs=32.9
Q ss_pred HhcCcEEEEEcCCC-cHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCchhHHHHHH
Q 024870 34 RERGSFSLVLSGGD-MPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPDSFYRQAQ 92 (261)
Q Consensus 34 ~~~~~~~l~lsGG~-tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~~~ 92 (261)
-+...+.|+|+||. |-..+++.+.-.+-+..+-..+.+++.|++| +....+++
T Consensus 51 ~~~sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w------~~l~~~l~ 104 (133)
T PF03641_consen 51 IESSDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNIDGFW------DPLLEFLD 104 (133)
T ss_dssp HHHESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCC------HHHHHHHH
T ss_pred HHhCCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCCcchH------HHHHHHHH
Confidence 45689999999994 6777888765221112222358888888987 44555554
No 23
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=66.71 E-value=14 Score=30.42 Aligned_cols=101 Identities=15% Similarity=0.124 Sum_probs=48.0
Q ss_pred cEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCchhHHHHHHHHhcCCCCCCCCcEEcCCC----CC
Q 024870 38 SFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPDSFYRQAQEAFISKVPILPAHVIPVSH----GV 113 (261)
Q Consensus 38 ~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~~~~~ll~~~~ip~~~i~~~~~----~~ 113 (261)
++.||||||.-=..|...|.+.. ....| ++..+.+|..+= ........++++. .+.++||- .+..++. ..
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~-~~~~~-~~~~~~vdh~~~--~~s~~~~~~v~~~-~~~~~i~~-~~~~~~~~~~~~~ 74 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELR-RRNGI-KLIAVHVDHGLR--EESDEEAEFVEEI-CEQLGIPL-YIVRIDEDRKKGS 74 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHH-TTTTT-EEEEEEEE-STS--CCHHHHHHHHHHH-HHHTT-EE-EEEE--CHCCTTS
T ss_pred CEEEEEcCCHHHHHHHHHHHHHH-HhcCC-CeEEEEEecCCC--cccchhHHHHHHH-HHhcCCce-EEEEeeeeecccC
Confidence 36799999965555554443220 12344 899999998762 1222234455543 34556532 2333332 34
Q ss_pred CHHHHHHHHH-HHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCccc
Q 024870 114 PGESAANNYE-FSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVA 160 (261)
Q Consensus 114 ~~~~~a~~y~-~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~a 160 (261)
..+..|+.+- +.+.+.... . ++|.+++ ||.+
T Consensus 75 ~~e~~aR~~Ry~~l~~~a~~----------~-g~~~i~~-----GHh~ 106 (182)
T PF01171_consen 75 NIEECARELRYQFLREIAKE----------E-GCNKIAL-----GHHL 106 (182)
T ss_dssp TCHHHHHHHHHHHHHHHHHT----------T-T-CEEE--------BH
T ss_pred CHHHHHHHHHHHHHHHhhhc----------c-cccceee-----cCcC
Confidence 5666665433 144444332 3 5899988 6776
No 24
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=61.24 E-value=40 Score=30.49 Aligned_cols=67 Identities=13% Similarity=0.172 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCchhHHHHHHHHh
Q 024870 23 DYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPDSFYRQAQEAF 95 (261)
Q Consensus 23 ~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~~~~~l 95 (261)
+...+.+++.+. .+++.+|||||.-....--++.+. ==++++..++|-.++-.+..+.-..+..+++
T Consensus 9 e~~i~~ir~~vg-~~kvi~alSGGVDSsv~a~L~~~A-----iGd~l~cvfVD~GLlR~~E~e~V~~~f~~~~ 75 (315)
T COG0519 9 EEAIEEIREQVG-DGKVILALSGGVDSSVAAVLAHRA-----IGDQLTCVFVDHGLLRKGEAEQVVEMFREHL 75 (315)
T ss_pred HHHHHHHHHHhC-CceEEEEecCCCcHHHHHHHHHHH-----hhcceEEEEecCCcccCCcHHHHHHHHHhhc
Confidence 344455556655 789999999996443332222221 1267899999999988887766665555543
No 25
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=51.61 E-value=45 Score=29.71 Aligned_cols=63 Identities=21% Similarity=0.290 Sum_probs=36.7
Q ss_pred HHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCchhHHHHHHHH
Q 024870 27 QISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPDSFYRQAQEA 94 (261)
Q Consensus 27 ~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~~~~~ 94 (261)
+.++.++++.+++.||+|||.--..+..+..+. +- +++.-+-+|==++|...-.--...+++.
T Consensus 8 ~~l~~~ik~~~kv~vAfSGGvDSslLa~la~~~----lG-~~v~AvTv~sP~~p~~e~e~A~~~A~~i 70 (269)
T COG1606 8 ERLKKAIKEKKKVVVAFSGGVDSSLLAKLAKEA----LG-DNVVAVTVDSPYIPRREIEEAKNIAKEI 70 (269)
T ss_pred HHHHHHHhhcCeEEEEecCCccHHHHHHHHHHH----hc-cceEEEEEecCCCChhhhhHHHHHHHHh
Confidence 456678888999999999996544444433322 22 5566666665444543322233444443
No 26
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=50.22 E-value=34 Score=31.23 Aligned_cols=52 Identities=12% Similarity=0.219 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCC
Q 024870 24 YVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPK 81 (261)
Q Consensus 24 ~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~ 81 (261)
...+.|++.+.. +++.+++|||--=..+..++.+. +. .+++.+.+|.-+.+.
T Consensus 5 ~~~~~l~~~v~~-~kVvValSGGVDSsvla~ll~~~----~G-~~v~av~vd~G~~~~ 56 (311)
T TIGR00884 5 EAVEEIREQVGD-AKVIIALSGGVDSSVAAVLAHRA----IG-DRLTCVFVDHGLLRK 56 (311)
T ss_pred HHHHHHHHHhCC-CcEEEEecCChHHHHHHHHHHHH----hC-CCEEEEEEeCCCCCh
Confidence 344555666654 88999999995434444444332 22 478999999876553
No 27
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=49.34 E-value=32 Score=34.14 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=51.6
Q ss_pred eEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCC------------------cHHHHHHhhCCCCCCCCCCCc
Q 024870 7 ELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGD------------------MPNRLGKLTRPPFLRTVDWSK 68 (261)
Q Consensus 7 ~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~------------------tp~~l~~~L~~~~~~~i~w~~ 68 (261)
-+++.++. +|+..+.++|. .....-+.-+.++.||- ||-.|++++.+....-=.|++
T Consensus 266 ~LV~tPTR-ELa~QV~~Hl~----ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~ 340 (731)
T KOG0347|consen 266 ALVVTPTR-ELAHQVKQHLK----AIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKK 340 (731)
T ss_pred eEEecChH-HHHHHHHHHHH----HhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhh
Confidence 46667776 55555555553 33333444455566663 455566666554221237999
Q ss_pred EEEEEecc--cccCCCCchhHHHHHHH
Q 024870 69 WHVFWAEE--NVVPKRHPDSFYRQAQE 93 (261)
Q Consensus 69 v~~f~~DE--r~vp~~~~~Sn~~~~~~ 93 (261)
|.+.-+|| |+|..+|=+-...+++-
T Consensus 341 vkcLVlDEaDRmvekghF~Els~lL~~ 367 (731)
T KOG0347|consen 341 VKCLVLDEADRMVEKGHFEELSKLLKH 367 (731)
T ss_pred ceEEEEccHHHHhhhccHHHHHHHHHH
Confidence 99999999 78999987766666554
No 28
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=49.28 E-value=16 Score=21.40 Aligned_cols=17 Identities=29% Similarity=0.667 Sum_probs=11.5
Q ss_pred hcCcEEEEEc-CCCcHHH
Q 024870 35 ERGSFSLVLS-GGDMPNR 51 (261)
Q Consensus 35 ~~~~~~l~ls-GG~tp~~ 51 (261)
++|+..|++| +|.+|..
T Consensus 1 r~g~LqI~ISTnG~sP~l 18 (30)
T PF14824_consen 1 RRGPLQIAISTNGKSPRL 18 (30)
T ss_dssp --TTEEEEEEESSS-HHH
T ss_pred CCCCeEEEEECCCCChHH
Confidence 3688899996 8888864
No 29
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=48.06 E-value=73 Score=30.36 Aligned_cols=63 Identities=25% Similarity=0.258 Sum_probs=36.8
Q ss_pred eEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCC------------------cHHHHHHhhCCCCCCCCCCCc
Q 024870 7 ELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGD------------------MPNRLGKLTRPPFLRTVDWSK 68 (261)
Q Consensus 7 ~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~------------------tp~~l~~~L~~~~~~~i~w~~ 68 (261)
-+++.++.+ |+..+.+.+. +.....+.-.+.+.||. ||..+++.+... .+++++
T Consensus 78 aLil~Ptre-La~Qi~~~~~----~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~---~~~l~~ 149 (456)
T PRK10590 78 ALILTPTRE-LAAQIGENVR----DYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQN---AVKLDQ 149 (456)
T ss_pred EEEEeCcHH-HHHHHHHHHH----HHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcC---Cccccc
Confidence 366677764 4444444433 33333334445555654 455555555443 578899
Q ss_pred EEEEEeccc
Q 024870 69 WHVFWAEEN 77 (261)
Q Consensus 69 v~~f~~DEr 77 (261)
+.++-+||-
T Consensus 150 v~~lViDEa 158 (456)
T PRK10590 150 VEILVLDEA 158 (456)
T ss_pred ceEEEeecH
Confidence 999999994
No 30
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=47.11 E-value=56 Score=28.45 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEeccc
Q 024870 13 SCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEEN 77 (261)
Q Consensus 13 ~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr 77 (261)
+.+++.+.+...|.+.+++. ....+.|+||||--=..+..++.+. ..=.+++.|.++..
T Consensus 2 ~~~~~~~~l~~~l~~~~~~~--~~~~vvv~lSGGiDSs~~a~la~~~----~~~~~v~~~~~~~~ 60 (248)
T cd00553 2 DLEEIINALVLFLRDYLRKS--GFKGVVLGLSGGIDSALVAALAVRA----LGRENVLALFMPSR 60 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHh--CCCCEEEeCCCcHHHHHHHHHHHHH----hCcccEEEEECCCC
Confidence 34555555555555444331 2357999999994333333333332 11146788888764
No 31
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=44.13 E-value=69 Score=27.40 Aligned_cols=88 Identities=13% Similarity=-0.063 Sum_probs=45.7
Q ss_pred HHHhcCcEEEEEcCCC-cHHHHHHhhCCCCCCCCCCCcEE-EEEecccccCCCCchhHHHHHHHHhcCCCCCCCCcEEcC
Q 024870 32 AIRERGSFSLVLSGGD-MPNRLGKLTRPPFLRTVDWSKWH-VFWAEENVVPKRHPDSFYRQAQEAFISKVPILPAHVIPV 109 (261)
Q Consensus 32 ~i~~~~~~~l~lsGG~-tp~~l~~~L~~~~~~~i~w~~v~-~f~~DEr~vp~~~~~Sn~~~~~~~ll~~~~ip~~~i~~~ 109 (261)
.+-+...+.|+++||- |-..++..|.-.......-.++- +++.+.+| +.-..+++.++....-+.+.....+
T Consensus 106 ~~~~~ada~V~~pGG~GTleEl~e~lt~~q~g~~~l~~~~~i~~~~~~~------~~~~~~~d~~~i~~~~i~~~~~~~~ 179 (205)
T COG1611 106 AMVRSADAFIVLPGGFGTLEELFEALTLGQTGVHALTPPPLILNGNGFW------EPLLEFLDPHLIVEGLISEADRELL 179 (205)
T ss_pred HHHHhCCEEEEeCCCcchHHHHHHHHHHhhCCcccCCCCcEEecchHHH------HHHHHHhCHHHHHhhcCChhhhhhe
Confidence 4457889999999994 66678877653211122334444 45555544 3334444434443333444433333
Q ss_pred CCCCCHHHHHHHHHHH
Q 024870 110 SHGVPGESAANNYEFS 125 (261)
Q Consensus 110 ~~~~~~~~~a~~y~~~ 125 (261)
.-..++++.++...+.
T Consensus 180 ~~~~~~~~~~~~~~~~ 195 (205)
T COG1611 180 IVVDDAEEAIDAILKY 195 (205)
T ss_pred eeecCHHHHHHHHHHh
Confidence 3334565555444433
No 32
>PRK00919 GMP synthase subunit B; Validated
Probab=43.61 E-value=70 Score=29.20 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCC
Q 024870 25 VYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPK 81 (261)
Q Consensus 25 i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~ 81 (261)
..+.|++.+.. +++.+++|||--=..+..++.+. +. .+++.+++|--..+.
T Consensus 11 ~~~~l~~~~~~-~kVlVa~SGGVDSsvla~la~~~----lG-~~v~aV~vD~G~~~~ 61 (307)
T PRK00919 11 AIEEIREEIGD-GKAIIALSGGVDSSVAAVLAHRA----IG-DRLTPVFVDTGLMRK 61 (307)
T ss_pred HHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHH----hC-CeEEEEEEECCCCCH
Confidence 33445556654 89999999995333333333331 22 468999999766653
No 33
>PLN02347 GMP synthetase
Probab=41.78 E-value=59 Score=32.10 Aligned_cols=52 Identities=13% Similarity=0.280 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCC
Q 024870 27 QISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRH 83 (261)
Q Consensus 27 ~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~ 83 (261)
+.+++.+..++++.+|||||--=..+..++.+. +. ++++-+++|.-..+...
T Consensus 220 ~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~a----lG-~~v~av~id~g~~~~~E 271 (536)
T PLN02347 220 ELIKATVGPDEHVICALSGGVDSTVAATLVHKA----IG-DRLHCVFVDNGLLRYKE 271 (536)
T ss_pred HHHHHHhccCCeEEEEecCChhHHHHHHHHHHH----hC-CcEEEEEEeCCCCChhH
Confidence 445556666789999999996544444444442 33 68899999986666553
No 34
>PRK06696 uridine kinase; Validated
Probab=41.08 E-value=29 Score=29.57 Aligned_cols=60 Identities=8% Similarity=0.031 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCc--HHHHHHhhCCCCCCCCCC-CcEEEEEecccccCC
Q 024870 14 CEELDSCLADYVYQISEAAIRERGSFSLVLSGGDM--PNRLGKLTRPPFLRTVDW-SKWHVFWAEENVVPK 81 (261)
Q Consensus 14 ~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~t--p~~l~~~L~~~~~~~i~w-~~v~~f~~DEr~vp~ 81 (261)
.+++.+.+|+.|.+. ...+++.|+++|++. -..+-+.|++... .+ ..+..+.+|.++.|.
T Consensus 3 ~~~~~~~la~~~~~~-----~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~---~~g~~v~~~~~Ddf~~~~ 65 (223)
T PRK06696 3 RKQLIKELAEHILTL-----NLTRPLRVAIDGITASGKTTFADELAEEIK---KRGRPVIRASIDDFHNPR 65 (223)
T ss_pred HHHHHHHHHHHHHHh-----CCCCceEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEeccccccCCH
Confidence 456667677766631 345789999998853 2334566665321 01 245556688887543
No 35
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=40.12 E-value=52 Score=28.60 Aligned_cols=46 Identities=20% Similarity=0.113 Sum_probs=34.0
Q ss_pred HHHHHHHHh-cCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccc
Q 024870 27 QISEAAIRE-RGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENV 78 (261)
Q Consensus 27 ~~i~~~i~~-~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~ 78 (261)
+.|++++++ .+.+.+++|||..=..+..++.+. ..++.++++|+-+
T Consensus 30 e~i~~a~~~~~~~i~vs~SGGKDS~vlL~L~~~~------~~~i~vvfiDTG~ 76 (241)
T PRK02090 30 ERLAWALENFGGRLALVSSFGAEDAVLLHLVAQV------DPDIPVIFLDTGY 76 (241)
T ss_pred HHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHhc------CCCCcEEEecCCC
Confidence 445566665 355899999998877777777753 2468999999866
No 36
>PRK13980 NAD synthetase; Provisional
Probab=39.82 E-value=83 Score=27.74 Aligned_cols=57 Identities=14% Similarity=0.189 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhc--CcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEeccc
Q 024870 13 SCEELDSCLADYVYQISEAAIRER--GSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEEN 77 (261)
Q Consensus 13 ~~~~l~~~~A~~i~~~i~~~i~~~--~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr 77 (261)
+.+.+.+.+...|. +.+++. ..+.|+||||--=..+..++.+. +.-.+++.+.++-.
T Consensus 9 ~~~~~~~~l~~~l~----~~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~----~~~~~v~av~~~~~ 67 (265)
T PRK13980 9 DYEKVREIIVDFIR----EEVEKAGAKGVVLGLSGGIDSAVVAYLAVKA----LGKENVLALLMPSS 67 (265)
T ss_pred CHHHHHHHHHHHHH----HHHHHcCCCcEEEECCCCHHHHHHHHHHHHH----hCccceEEEEeeCC
Confidence 45555555555554 555443 58999999995333333333321 11136788887754
No 37
>PRK00074 guaA GMP synthase; Reviewed
Probab=39.36 E-value=68 Score=31.37 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCC
Q 024870 25 VYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPK 81 (261)
Q Consensus 25 i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~ 81 (261)
+.+.|++.++ ++++.+|+|||--=..+..++.+. +. .++..+.+|.-+.+.
T Consensus 205 ~~~~l~~~v~-~~~vlva~SGGvDS~vll~ll~~~----lg-~~v~av~vd~g~~~~ 255 (511)
T PRK00074 205 AIEEIREQVG-DKKVILGLSGGVDSSVAAVLLHKA----IG-DQLTCVFVDHGLLRK 255 (511)
T ss_pred HHHHHHHhcC-CCcEEEEeCCCccHHHHHHHHHHH----hC-CceEEEEEeCCCCCH
Confidence 3344555554 478999999996444444444432 22 468899999876553
No 38
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=37.45 E-value=22 Score=18.11 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=9.4
Q ss_pred CCCCCcccccCC
Q 024870 153 LGTRCDVASIYP 164 (261)
Q Consensus 153 ~G~DGH~aslfP 164 (261)
-|..||++..-|
T Consensus 6 C~~~GH~~~~Cp 17 (18)
T PF00098_consen 6 CGEPGHIARDCP 17 (18)
T ss_dssp TSCSSSCGCTSS
T ss_pred CCCcCcccccCc
Confidence 378899998766
No 39
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=36.88 E-value=1.1e+02 Score=26.68 Aligned_cols=60 Identities=13% Similarity=0.221 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh-cCcEEEEEcCCCcHHHHHHhhC-CCCCCCCCCCcEEEEEeccc
Q 024870 16 ELDSCLADYVYQISEAAIRE-RGSFSLVLSGGDMPNRLGKLTR-PPFLRTVDWSKWHVFWAEEN 77 (261)
Q Consensus 16 ~l~~~~A~~i~~~i~~~i~~-~~~~~l~lsGG~tp~~l~~~L~-~~~~~~i~w~~v~~f~~DEr 77 (261)
+=...+++.|.+.+++.-+. +...++.++||+=-..+|-.++ +.+ .=+.+++.=.+++|.
T Consensus 91 ~d~~~~~~~I~~~i~~l~~~~~~~lh~sIAGGRKtMs~~~~~a~sL~--gr~~Drl~HVlv~~~ 152 (224)
T PF09623_consen 91 EDNEAFADFIYRLIRELKQDPGRRLHVSIAGGRKTMSFYAGYAASLF--GRPQDRLSHVLVNEE 152 (224)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCeEEEEecCChHHHHHHHHHHHHHc--CCccceEEEEEeCcc
Confidence 33456788888888776555 5678999999987777765543 221 113466544445553
No 40
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=36.44 E-value=1.4e+02 Score=29.17 Aligned_cols=92 Identities=20% Similarity=0.206 Sum_probs=47.8
Q ss_pred eEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCC------------------cHHHHHHhhCCCCCCCCCCCc
Q 024870 7 ELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGD------------------MPNRLGKLTRPPFLRTVDWSK 68 (261)
Q Consensus 7 ~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~------------------tp~~l~~~L~~~~~~~i~w~~ 68 (261)
-+++.++. +|+..+.+.+ +...+.-+.-..++.||. ||..+.+.|... .+..++
T Consensus 199 aLIL~PTr-eLa~Qi~~~~----~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~---~~~l~~ 270 (518)
T PLN00206 199 AMVLTPTR-ELCVQVEDQA----KVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH---DIELDN 270 (518)
T ss_pred EEEEeCCH-HHHHHHHHHH----HHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC---Cccchh
Confidence 46677876 3444333332 222222333455566665 344445555443 678899
Q ss_pred EEEEEecccc--cCCCCchhHHHHHHHHhcCCCCCCCCcEEcCCCCC
Q 024870 69 WHVFWAEENV--VPKRHPDSFYRQAQEAFISKVPILPAHVIPVSHGV 113 (261)
Q Consensus 69 v~~f~~DEr~--vp~~~~~Sn~~~~~~~ll~~~~ip~~~i~~~~~~~ 113 (261)
+.++-+||-- +.. .+...+.+. +..+ +..++..+-.+.
T Consensus 271 v~~lViDEad~ml~~----gf~~~i~~i-~~~l--~~~q~l~~SATl 310 (518)
T PLN00206 271 VSVLVLDEVDCMLER----GFRDQVMQI-FQAL--SQPQVLLFSATV 310 (518)
T ss_pred eeEEEeecHHHHhhc----chHHHHHHH-HHhC--CCCcEEEEEeeC
Confidence 9999999943 322 233344433 3333 445666554433
No 41
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=36.09 E-value=77 Score=22.94 Aligned_cols=44 Identities=14% Similarity=0.125 Sum_probs=37.9
Q ss_pred hcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCc
Q 024870 35 ERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHP 84 (261)
Q Consensus 35 ~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~ 84 (261)
..+.+...+.+++|-+.+-+.|. +++..|.+..+|-+.++.++.
T Consensus 21 r~~~~~~~~~~~~tvkd~IEsLG------VP~tEV~~i~vNG~~v~~~~~ 64 (81)
T PF14451_consen 21 RGGPFTHPFDGGATVKDVIESLG------VPHTEVGLILVNGRPVDFDYR 64 (81)
T ss_pred cCCceEEecCCCCcHHHHHHHcC------CChHHeEEEEECCEECCCccc
Confidence 45788999999999999988886 889999999999998888743
No 42
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=35.08 E-value=95 Score=24.24 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=25.7
Q ss_pred cEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccc
Q 024870 38 SFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENV 78 (261)
Q Consensus 38 ~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~ 78 (261)
++.+++|||..=..+..++.+... +. .++.++++|.-+
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~-~~--~~~~~v~~dtg~ 38 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALP-EL--KPVPVIFLDTGY 38 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcc-cc--cCceEEEeCCCC
Confidence 367899999766666666654311 11 578899999855
No 43
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=34.07 E-value=1.2e+02 Score=28.94 Aligned_cols=63 Identities=22% Similarity=0.205 Sum_probs=35.1
Q ss_pred eEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCC-------------------cHHHHHHhhCCCCCCCCCCC
Q 024870 7 ELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGD-------------------MPNRLGKLTRPPFLRTVDWS 67 (261)
Q Consensus 7 ~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~-------------------tp~~l~~~L~~~~~~~i~w~ 67 (261)
-++++++. +|+....+.+. +..+..+.-...+.||. ||..+++.+... .+.++
T Consensus 165 aLil~Ptr-eLa~Q~~~~~~----~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~---~~~l~ 236 (475)
T PRK01297 165 ALIIAPTR-ELVVQIAKDAA----ALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG---EVHLD 236 (475)
T ss_pred EEEEeCcH-HHHHHHHHHHH----HhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC---Ccccc
Confidence 47788887 44444443333 33223333344555552 455555444332 46678
Q ss_pred cEEEEEeccc
Q 024870 68 KWHVFWAEEN 77 (261)
Q Consensus 68 ~v~~f~~DEr 77 (261)
++.++-+||-
T Consensus 237 ~l~~lViDEa 246 (475)
T PRK01297 237 MVEVMVLDEA 246 (475)
T ss_pred cCceEEechH
Confidence 9999999994
No 44
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=33.63 E-value=1.6e+02 Score=29.60 Aligned_cols=62 Identities=29% Similarity=0.329 Sum_probs=39.4
Q ss_pred EEEeCCHHHHHHHHHHHHHHHHHHHHHh-cCcEEEEEcCCC------------------cHHHHHHhhCCCCCCCCCCCc
Q 024870 8 LRLFDSCEELDSCLADYVYQISEAAIRE-RGSFSLVLSGGD------------------MPNRLGKLTRPPFLRTVDWSK 68 (261)
Q Consensus 8 i~i~~~~~~l~~~~A~~i~~~i~~~i~~-~~~~~l~lsGG~------------------tp~~l~~~L~~~~~~~i~w~~ 68 (261)
+++.++. +|+..+++.+... ... .+.-++.+.||. ||..+++.|... .++.++
T Consensus 78 LIL~PTr-eLa~Qv~~~l~~~----~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~---~l~l~~ 149 (629)
T PRK11634 78 LVLAPTR-ELAVQVAEAMTDF----SKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG---TLDLSK 149 (629)
T ss_pred EEEeCcH-HHHHHHHHHHHHH----HhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcC---Ccchhh
Confidence 5667776 5666666665533 222 234455666664 566666666543 678899
Q ss_pred EEEEEeccc
Q 024870 69 WHVFWAEEN 77 (261)
Q Consensus 69 v~~f~~DEr 77 (261)
+.++-+||-
T Consensus 150 l~~lVlDEA 158 (629)
T PRK11634 150 LSGLVLDEA 158 (629)
T ss_pred ceEEEeccH
Confidence 999999994
No 45
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=33.58 E-value=1.1e+02 Score=24.11 Aligned_cols=44 Identities=14% Similarity=0.055 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcC--cEEEEEcCCCcHHHHHHhhC
Q 024870 13 SCEELDSCLADYVYQISEAAIRERG--SFSLVLSGGDMPNRLGKLTR 57 (261)
Q Consensus 13 ~~~~l~~~~A~~i~~~i~~~i~~~~--~~~l~lsGG~tp~~l~~~L~ 57 (261)
+.++.- .+++.|.+.+++.=+..+ +.++.+|||+=-..+|-.++
T Consensus 66 t~~d~~-~~~~~I~~~i~~l~~~~~~~~lh~~iaGGRK~Ms~~~~~a 111 (124)
T TIGR03642 66 SDEDIL-TFMSIAAKEVKKERENYGCERIIVNISGGRKIMTIILALY 111 (124)
T ss_pred CHHHHH-HHHHHHHHHHHHHhhCCCcceEEEEecCCHHHHHHHHHHH
Confidence 444443 445577777765433333 69999999987777775543
No 46
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=33.09 E-value=1.8e+02 Score=27.75 Aligned_cols=53 Identities=9% Similarity=-0.019 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccc
Q 024870 25 VYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENV 78 (261)
Q Consensus 25 i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~ 78 (261)
+...+.+.++...++.||+|||.-=..|...|.+.......+ +++.+++|.-.
T Consensus 4 ~~~~l~~~l~~~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~-~l~a~hvnhgl 56 (436)
T PRK10660 4 LTLTLNRQLLTSRQILVAFSGGLDSTVLLHLLVQWRTENPGV-TLRAIHVHHGL 56 (436)
T ss_pred HHHHHHHhcCCCCeEEEEecCCHHHHHHHHHHHHHHHhcCCC-eEEEEEEeCCC
Confidence 345566677788999999999965455555554210001122 58889999755
No 47
>PRK00768 nadE NAD synthetase; Reviewed
Probab=32.95 E-value=63 Score=28.93 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhc--CcEEEEEcCCC
Q 024870 13 SCEELDSCLADYVYQISEAAIRER--GSFSLVLSGGD 47 (261)
Q Consensus 13 ~~~~l~~~~A~~i~~~i~~~i~~~--~~~~l~lsGG~ 47 (261)
+.+...+.+.++|. +.+++. ..++|+||||-
T Consensus 17 ~~~~~~~~i~~~L~----~~l~~~g~~g~VlGlSGGI 49 (268)
T PRK00768 17 DPEEEIRRRVDFLK----DYLKKSGLKSLVLGISGGQ 49 (268)
T ss_pred CHHHHHHHHHHHHH----HHHHHcCCCeEEEECCCCH
Confidence 45555555444444 555544 56899999993
No 48
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=32.87 E-value=85 Score=25.57 Aligned_cols=40 Identities=8% Similarity=-0.041 Sum_probs=31.1
Q ss_pred HHHhcCcEEEEEcCCC-cHHHHHHhhCCCCCCCCCCCcEEEEEecccc
Q 024870 32 AIRERGSFSLVLSGGD-MPNRLGKLTRPPFLRTVDWSKWHVFWAEENV 78 (261)
Q Consensus 32 ~i~~~~~~~l~lsGG~-tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~ 78 (261)
.+.+...+.|+|+||. |-..+++.+.. .+.+.+++.+.+|
T Consensus 87 ~m~~~sda~IvlpGG~GTL~E~~~a~~~-------~kpv~~l~~~g~~ 127 (159)
T TIGR00725 87 ILVRSADVVVSVGGGYGTAIEILGAYAL-------GGPVVVLRGTGGW 127 (159)
T ss_pred HHHHHCCEEEEcCCchhHHHHHHHHHHc-------CCCEEEEECCCcc
Confidence 3456788999999995 66778887773 2668899999988
No 49
>TIGR02584 cas_NE0113 CRISPR-associated protein, NE0113 family. Members of this minor CRISPR-associated (Cas) protein family are found in cas gene clusters in Vibrio vulnificus YJ016, Nitrosomonas europaea ATCC 19718, Mannheimia succiniciproducens MBEL55E, and Verrucomicrobium spinosum.
Probab=32.53 E-value=92 Score=26.81 Aligned_cols=57 Identities=11% Similarity=0.111 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHH-hcCcEEEEEcCCCcHHHHHHhhC-CCCCCCCCCCcEEEEEecc
Q 024870 18 DSCLADYVYQISEAAIR-ERGSFSLVLSGGDMPNRLGKLTR-PPFLRTVDWSKWHVFWAEE 76 (261)
Q Consensus 18 ~~~~A~~i~~~i~~~i~-~~~~~~l~lsGG~tp~~l~~~L~-~~~~~~i~w~~v~~f~~DE 76 (261)
.+++|+.|.+.+++.-+ .+-..++++|||+--..+|-..+ +.+ .=+-+|+.=.+++|
T Consensus 99 n~~aa~~I~~~v~~Lt~d~~~~lH~sIAGGRKtMg~~~g~A~sL~--gr~qDrL~HVLV~e 157 (209)
T TIGR02584 99 NEAAANFIVQTVAPLCAAQDHQLHASIAGGRKTMGFYLGYALSLF--GREQDRLSHVLVSE 157 (209)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEecCcHHHHHHHHHHHHHHh--CCccceEEEEecCc
Confidence 45888999988888764 44578999999987777665433 211 01235555555555
No 50
>KOG3363 consensus Uncharacterized conserved nuclear protein [Function unknown]
Probab=32.21 E-value=31 Score=28.63 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=17.4
Q ss_pred CCcccEEEecCCCCCcccccCC
Q 024870 143 CPQFDLVLLTLGTRCDVASIYP 164 (261)
Q Consensus 143 ~~~~Dl~lLG~G~DGH~aslfP 164 (261)
.|.+|+.++|+|.+-|.--+=|
T Consensus 109 ePkidlLIvG~Gd~~~p~~v~~ 130 (196)
T KOG3363|consen 109 EPKIDLLIVGCGDKKHPDKVRP 130 (196)
T ss_pred CCCccEEEEecCCcCCchhcCH
Confidence 4679999999999998754433
No 51
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=32.13 E-value=61 Score=28.28 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHh--cCcEEEEEcCCC
Q 024870 23 DYVYQISEAAIRE--RGSFSLVLSGGD 47 (261)
Q Consensus 23 ~~i~~~i~~~i~~--~~~~~l~lsGG~ 47 (261)
+.+.+.+++.+++ ...+.|+||||-
T Consensus 7 ~~l~~~l~~~v~~~~~~~V~vglSGGi 33 (250)
T TIGR00552 7 EEIEDFLRGYVQKSGAKGVVLGLSGGI 33 (250)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCcH
Confidence 4455555565555 467899999994
No 52
>PTZ00323 NAD+ synthase; Provisional
Probab=31.73 E-value=72 Score=28.90 Aligned_cols=31 Identities=13% Similarity=-0.009 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHh--cCcEEEEEcCCC
Q 024870 13 SCEELDSCLADYVYQISEAAIRE--RGSFSLVLSGGD 47 (261)
Q Consensus 13 ~~~~l~~~~A~~i~~~i~~~i~~--~~~~~l~lsGG~ 47 (261)
+.+++.+...+.|. +.+++ .+.++|+||||-
T Consensus 25 ~~~~~i~~~~~~L~----~~l~~~g~~~vVVglSGGV 57 (294)
T PTZ00323 25 NPAAWIEKKCAKLN----EYMRRCGLKGCVTSVSGGI 57 (294)
T ss_pred CHHHHHHHHHHHHH----HHHHHcCCCcEEEECCCCH
Confidence 34555555555554 44444 688999999994
No 53
>PRK00876 nadE NAD synthetase; Reviewed
Probab=31.01 E-value=1.6e+02 Score=27.13 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEeccc
Q 024870 13 SCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEEN 77 (261)
Q Consensus 13 ~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr 77 (261)
+.++..+.+.+.|.+.+++... ...+.++||||--=..+..++.+. +...++..+.+++.
T Consensus 11 ~~~~~~e~i~~~l~~~V~~~~~-~~~VvVgLSGGIDSSvvaaLa~~a----~g~~~v~av~~~~~ 70 (326)
T PRK00876 11 DAAAEAERIRAAIREQVRGTLR-RRGVVLGLSGGIDSSVTAALCVRA----LGKERVYGLLMPER 70 (326)
T ss_pred CHHHHHHHHHHHHHHHHHHHcC-CCCEEEEccCCHHHHHHHHHHHHh----hCCCcEEEEEecCC
Confidence 4455555444444444433222 247999999994332222223221 12246777777764
No 54
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=31.00 E-value=2.3e+02 Score=25.33 Aligned_cols=73 Identities=12% Similarity=-0.030 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHH----HHhhCCCCCCCCCCCcEEEEEecccccCCCCchhHH
Q 024870 13 SCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRL----GKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPDSFY 88 (261)
Q Consensus 13 ~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l----~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~ 88 (261)
+.++..+.+.+++.+.+++ ...+.++++||||---... .+.+.+ ...-+++.-+.+..+.|+..+ ..+.
T Consensus 4 d~~~~~~~~~~fl~~~l~~--~~~k~~VlGiSGGiDSa~~~~La~~A~~~----~~~~~~~~av~mP~~~~~~~~-~~da 76 (268)
T COG0171 4 DLEEEINRLVDFLRDYLKK--AGFKGVVLGLSGGIDSALVLALAVRALGK----GDSKENVLAVRLPYGYTVQAD-EEDA 76 (268)
T ss_pred CHHHHHHHHHHHHHHHHHH--cCCCCeEEEcccChHHHHHHHHHHHHhcc----ccchhheeeEECCCCCccccC-HHHH
Confidence 5667777777777766552 3457799999999432222 233332 233456777777777643333 3344
Q ss_pred HHHH
Q 024870 89 RQAQ 92 (261)
Q Consensus 89 ~~~~ 92 (261)
.-+-
T Consensus 77 ~~~~ 80 (268)
T COG0171 77 QDLA 80 (268)
T ss_pred HHHH
Confidence 4333
No 55
>PF07005 DUF1537: Protein of unknown function, DUF1537; InterPro: IPR010737 This entry represents a conserved region found in a range of Proteobacteria as well as the Gram-positive Oceanobacillus iheyensis. This entry includes YgbK from Escherichia coli, which is dependent upon FlhDC, the master regulator of the flagellar genes. The ygbK gene appears to be regulated by sigmaF [].; PDB: 3DQQ_B 1YZY_B.
Probab=29.92 E-value=85 Score=26.61 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhC
Q 024870 18 DSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTR 57 (261)
Q Consensus 18 ~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~ 57 (261)
+..+++.+.+..++.+++.+.-.|.++||.|-..+.+.|.
T Consensus 176 s~~i~~~la~l~~~l~~~~~~~~li~tGGDTa~av~~~Lg 215 (223)
T PF07005_consen 176 SREIADALAELAARLLERVGISGLILTGGDTASAVLKALG 215 (223)
T ss_dssp HHHHHHHHHHHHHHHHHC-TEEEEEEESHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHhC
Confidence 3447777777777777777888999999999998888765
No 56
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=29.05 E-value=2.3e+02 Score=27.89 Aligned_cols=93 Identities=17% Similarity=0.190 Sum_probs=50.5
Q ss_pred CCeEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCc------------------HHHHHHhhCCCCCCCCCC
Q 024870 5 EPELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDM------------------PNRLGKLTRPPFLRTVDW 66 (261)
Q Consensus 5 ~~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~t------------------p~~l~~~L~~~~~~~i~w 66 (261)
.+.+.|..--.||+..+.+... +.-..-+--+.+|.||.+ |-.++++|.. +.++.
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~----~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~---g~~~l 237 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAR----EFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE---GSLNL 237 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHH----HHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc---CCccc
Confidence 4444444433456655544444 222222233889999974 3333333333 47999
Q ss_pred CcEEEEEecc--cccCCCCchhHHHHHHHHhcCCCCCCCCcEEcC
Q 024870 67 SKWHVFWAEE--NVVPKRHPDSFYRQAQEAFISKVPILPAHVIPV 109 (261)
Q Consensus 67 ~~v~~f~~DE--r~vp~~~~~Sn~~~~~~~ll~~~~ip~~~i~~~ 109 (261)
+++.+.-+|| |.+.-+ |...+++. +..++-+..|...+
T Consensus 238 ~~v~ylVLDEADrMldmG----Fe~qI~~I-l~~i~~~~rQtlm~ 277 (519)
T KOG0331|consen 238 SRVTYLVLDEADRMLDMG----FEPQIRKI-LSQIPRPDRQTLMF 277 (519)
T ss_pred cceeEEEeccHHhhhccc----cHHHHHHH-HHhcCCCcccEEEE
Confidence 9999999999 443333 55555553 34553333344444
No 57
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=28.75 E-value=1.2e+02 Score=26.60 Aligned_cols=43 Identities=14% Similarity=0.087 Sum_probs=25.8
Q ss_pred hcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCC-cEEEEEecccc
Q 024870 35 ERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWS-KWHVFWAEENV 78 (261)
Q Consensus 35 ~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~-~v~~f~~DEr~ 78 (261)
...++.||+|||.-=..|...|.+.. ....+. ++..+++|...
T Consensus 28 ~~~kilVa~SGG~DS~~LL~ll~~l~-~~~~~~~~l~av~vd~g~ 71 (258)
T PRK10696 28 EGDRVMVCLSGGKDSYTLLDILLNLQ-KRAPINFELVAVNLDQKQ 71 (258)
T ss_pred CCCEEEEEecCCHHHHHHHHHHHHHH-HhCCCCeEEEEEEecCCC
Confidence 35689999999965555554443311 012222 67888888754
No 58
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=28.57 E-value=1.3e+02 Score=26.23 Aligned_cols=44 Identities=11% Similarity=0.033 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecc
Q 024870 27 QISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEE 76 (261)
Q Consensus 27 ~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DE 76 (261)
+.+++.++..+.+.+++|||.-=..+...+.+. ..++..+.+|-
T Consensus 3 ~~l~~~l~~~~~vlVa~SGGvDSs~ll~la~~~------g~~v~av~~~~ 46 (252)
T TIGR00268 3 ENLRNFLKEFKKVLIAYSGGVDSSLLAAVCSDA------GTEVLAITVVS 46 (252)
T ss_pred HHHHHHHHhcCCEEEEecCcHHHHHHHHHHHHh------CCCEEEEEecC
Confidence 356677888999999999995333333333321 23577777775
No 59
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=28.18 E-value=2.9e+02 Score=24.28 Aligned_cols=90 Identities=11% Similarity=0.145 Sum_probs=54.4
Q ss_pred HHHHhcCcEEEEEcCCCcH--HHHHHhhCCCCCCCCCCCcEEEEEeccccc------CCCCc-----------hhHHHHH
Q 024870 31 AAIRERGSFSLVLSGGDMP--NRLGKLTRPPFLRTVDWSKWHVFWAEENVV------PKRHP-----------DSFYRQA 91 (261)
Q Consensus 31 ~~i~~~~~~~l~lsGG~tp--~~l~~~L~~~~~~~i~w~~v~~f~~DEr~v------p~~~~-----------~Sn~~~~ 91 (261)
+.++.++..++||+..... ...++.|.+. .|++++-- |.-|.++. ...+. .-+-+-+
T Consensus 91 ~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~---gi~fs~~~-~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~~KG~~ 166 (252)
T PF11019_consen 91 NSLQNKGIPVIALTARGPNMEDWTLRELKSL---GIDFSSSS-FPEDGIISFPVFDSALSRAPSFYDGILFTGGQDKGEV 166 (252)
T ss_pred HHHHHCCCcEEEEcCCChhhHHHHHHHHHHC---CCCccccc-cccCcceecccccCCCCCCceeecCeEEeCCCccHHH
Confidence 3478899999999866522 3345666664 67776654 33333220 01111 2234567
Q ss_pred HHHhcCCCCCCCCcEEcCCCCCCHHHHHHHHHHHHH
Q 024870 92 QEAFISKVPILPAHVIPVSHGVPGESAANNYEFSIR 127 (261)
Q Consensus 92 ~~~ll~~~~ip~~~i~~~~~~~~~~~~a~~y~~~i~ 127 (261)
-..||+.++-.+++|+++|... +.....++.++
T Consensus 167 L~~fL~~~~~~pk~IIfIDD~~---~nl~sv~~a~k 199 (252)
T PF11019_consen 167 LKYFLDKINQSPKKIIFIDDNK---ENLKSVEKACK 199 (252)
T ss_pred HHHHHHHcCCCCCeEEEEeCCH---HHHHHHHHHHh
Confidence 7789999998899999997642 33444455544
No 60
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=27.98 E-value=1.7e+02 Score=28.62 Aligned_cols=70 Identities=17% Similarity=0.103 Sum_probs=45.5
Q ss_pred eEEEeCCHHHHHHHHHHHHHHHHHHHHHhc-CcEEEEEcCCCcHHHHHHhhCCC---------------CCCCCCCCcEE
Q 024870 7 ELRLFDSCEELDSCLADYVYQISEAAIRER-GSFSLVLSGGDMPNRLGKLTRPP---------------FLRTVDWSKWH 70 (261)
Q Consensus 7 ~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~-~~~~l~lsGG~tp~~l~~~L~~~---------------~~~~i~w~~v~ 70 (261)
-+++.+|. ||+..+++.+... .... +--++.+.||.+...-.+.|... ....++.+++.
T Consensus 102 aLil~PTR-ELA~Qi~~~~~~~----~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~ 176 (513)
T COG0513 102 ALILAPTR-ELAVQIAEELRKL----GKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVE 176 (513)
T ss_pred eEEECCCH-HHHHHHHHHHHHH----HhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcC
Confidence 57788888 6777666666533 3333 33367778888665544544421 02378999999
Q ss_pred EEEecc--cccCC
Q 024870 71 VFWAEE--NVVPK 81 (261)
Q Consensus 71 ~f~~DE--r~vp~ 81 (261)
++-+|| |++..
T Consensus 177 ~lVlDEADrmLd~ 189 (513)
T COG0513 177 TLVLDEADRMLDM 189 (513)
T ss_pred EEEeccHhhhhcC
Confidence 999999 55555
No 61
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=27.56 E-value=83 Score=25.02 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=22.3
Q ss_pred CcEEEEEc---CCC-cHH-----HHHHhhCCCCCCCCCCCcEEEEEecccc
Q 024870 37 GSFSLVLS---GGD-MPN-----RLGKLTRPPFLRTVDWSKWHVFWAEENV 78 (261)
Q Consensus 37 ~~~~l~ls---GG~-tp~-----~l~~~L~~~~~~~i~w~~v~~f~~DEr~ 78 (261)
..++|++| .|+ +++ .+-+.|.+. + ++.+++.|||+
T Consensus 56 ~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~----~---~~~v~~~DEr~ 99 (138)
T PRK00109 56 DGLVVGLPLNMDGTEGPRTERARKFANRLEGR----F---GLPVVLVDERL 99 (138)
T ss_pred CEEEEeccCCCCCCcCHHHHHHHHHHHHHHHH----h---CCCEEEEcCCc
Confidence 55888876 454 553 333445442 2 57899999997
No 62
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=27.25 E-value=1.7e+02 Score=22.89 Aligned_cols=15 Identities=20% Similarity=0.151 Sum_probs=6.3
Q ss_pred hcCcEEEEEcCCCcH
Q 024870 35 ERGSFSLVLSGGDMP 49 (261)
Q Consensus 35 ~~~~~~l~lsGG~tp 49 (261)
++....|.+|||...
T Consensus 35 ~g~~~~il~SGg~~~ 49 (155)
T PF02698_consen 35 AGYAPRILFSGGYGH 49 (155)
T ss_dssp -HHT--EEEE--SST
T ss_pred cCCCCeEEECCCCCC
Confidence 444556888887543
No 63
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=27.00 E-value=1.9e+02 Score=22.25 Aligned_cols=70 Identities=17% Similarity=0.377 Sum_probs=41.8
Q ss_pred HHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCC--CCcEEEEEecccccCCCCchhHHHHHHHHhcCCCCCCCCcEEcC
Q 024870 32 AIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVD--WSKWHVFWAEENVVPKRHPDSFYRQAQEAFISKVPILPAHVIPV 109 (261)
Q Consensus 32 ~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~--w~~v~~f~~DEr~vp~~~~~Sn~~~~~~~ll~~~~ip~~~i~~~ 109 (261)
.+++++.-.+++|+++ +..+-..|.+. .+. ++ .++-.+|.-.+..+++-+...+++. +++++++..+
T Consensus 88 ~l~~~~~~~~i~Sn~~-~~~~~~~l~~~---~~~~~f~--~i~~~~~~~~~Kp~~~~~~~~~~~~-----~~~p~~~~~v 156 (176)
T PF13419_consen 88 RLKAKGIPLVIVSNGS-RERIERVLERL---GLDDYFD--EIISSDDVGSRKPDPDAYRRALEKL-----GIPPEEILFV 156 (176)
T ss_dssp HHHHTTSEEEEEESSE-HHHHHHHHHHT---THGGGCS--EEEEGGGSSSSTTSHHHHHHHHHHH-----TSSGGGEEEE
T ss_pred hcccccceeEEeecCC-ccccccccccc---ccccccc--cccccchhhhhhhHHHHHHHHHHHc-----CCCcceEEEE
Confidence 4456677777778774 33333344332 222 33 5666777666666776665555554 6778898888
Q ss_pred CCC
Q 024870 110 SHG 112 (261)
Q Consensus 110 ~~~ 112 (261)
+..
T Consensus 157 gD~ 159 (176)
T PF13419_consen 157 GDS 159 (176)
T ss_dssp ESS
T ss_pred eCC
Confidence 653
No 64
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=26.96 E-value=1.9e+02 Score=26.10 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=25.1
Q ss_pred cEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCC
Q 024870 38 SFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRH 83 (261)
Q Consensus 38 ~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~ 83 (261)
++.+++|||--=..+..++.+. +. .++..+++|--+.+..+
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~----lG-~~v~aV~vd~g~~~~~E 41 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKA----IG-DRLTCVFVDNGLLRKNE 41 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHH----hC-CcEEEEEecCCCCChHH
Confidence 3679999995444444444432 22 25888888876655443
No 65
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=26.73 E-value=61 Score=26.28 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCcEEEEEcCCCcH-HHHHHhhCCC---CCCCCCCCcEEEEEecccccCCCCchhHHHHHHHHh
Q 024870 27 QISEAAIRERGSFSLVLSGGDMP-NRLGKLTRPP---FLRTVDWSKWHVFWAEENVVPKRHPDSFYRQAQEAF 95 (261)
Q Consensus 27 ~~i~~~i~~~~~~~l~lsGG~tp-~~l~~~L~~~---~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~~~~~l 95 (261)
+.+.+.|.++.+-+|+++|-++- ..+++.+.+. ....-.+..|.+.++||-. ..-.||....++.|
T Consensus 53 ~~l~~~i~~~kP~vI~v~g~~~~s~~l~~~v~~~v~~~~~~~~~~~i~V~~v~~~~---A~lY~~S~rA~~EF 122 (150)
T PF14639_consen 53 ERLKKFIEKHKPDVIAVGGNSRESRKLYDDVRDIVEELDEDEQMPPIPVVIVDDEV---ARLYSNSKRAAEEF 122 (150)
T ss_dssp HHHHHHHHHH--SEEEE--SSTHHHHHHHHHHHHHHHTTB-TTS-B--EEE---TT---HHHHHTSHHHHHHS
T ss_pred HHHHHHHHHcCCeEEEEcCCChhHHHHHHHHHHHHHHhhhcccCCCceEEEECcHH---HHHHhcCHHHHHHC
Confidence 34445666778888888654432 4466654321 1123357789999999832 11135555666655
No 66
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=26.55 E-value=2.7e+02 Score=26.60 Aligned_cols=70 Identities=19% Similarity=0.322 Sum_probs=43.3
Q ss_pred cccEEEecCCCCCcccccCCCCCCCCC--CCceEEEecCCCC-CCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhc
Q 024870 145 QFDLVLLTLGTRCDVASIYPNNPVLQE--DSQWVAWVSSNAP-RESVTLTLPVINAAANVAIVASGIDVARPFLHVMM 219 (261)
Q Consensus 145 ~~Dl~lLG~G~DGH~aslfP~~~~l~~--~~~~~~~~~~~~p-~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~ 219 (261)
.+|.++|--|.|||=.-.-||..+-.. ...++.+.+ ..| .+-.++- +. .++++++-.|.--.++-+-++.
T Consensus 108 ~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyn-g~P~~~~le~d---ls-~~~vvIvG~GNVAlDvARiLls 180 (468)
T KOG1800|consen 108 NYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYN-GLPENQNLEPD---LS-GRKVVIVGNGNVALDVARILLS 180 (468)
T ss_pred cccEEEEEecCCCCcccCCCCcccccceehhhhhhhcc-CCCcccccCcc---cc-cceEEEEccCchhhhhhhhhhC
Confidence 589999999999999999999752211 122233332 222 1122222 22 7888888888777776665544
No 67
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=25.32 E-value=1e+02 Score=28.06 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHH-HHHhhCC
Q 024870 19 SCLADYVYQISEAAIRERGSFSLVLSGGDMPNR-LGKLTRP 58 (261)
Q Consensus 19 ~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~-l~~~L~~ 58 (261)
..+++.+.+.++.+.++.+.-+|+|+||---.. +.+.|.+
T Consensus 241 ~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~ 281 (314)
T TIGR03723 241 AAVVDVLVEKTKRALKKTGLKTLVVAGGVAANSRLRERLEE 281 (314)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHH
Confidence 556667777777777777777899999976544 4445543
No 68
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=25.28 E-value=50 Score=28.92 Aligned_cols=49 Identities=10% Similarity=0.046 Sum_probs=26.3
Q ss_pred HHHHHHHHHh--cCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccc
Q 024870 26 YQISEAAIRE--RGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENV 78 (261)
Q Consensus 26 ~~~i~~~i~~--~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~ 78 (261)
...|++.+++ .+.++|+||||---..+..+..+. +.=++++-+.++-..
T Consensus 6 ~~~L~~~~~~~g~~~vVvglSGGiDSav~A~La~~A----lg~~~v~~v~mp~~~ 56 (242)
T PF02540_consen 6 VDFLRDYVKKSGAKGVVVGLSGGIDSAVVAALAVKA----LGPDNVLAVIMPSGF 56 (242)
T ss_dssp HHHHHHHHHHHTTSEEEEEETSSHHHHHHHHHHHHH----HGGGEEEEEEEESST
T ss_pred HHHHHHHHHHhCCCeEEEEcCCCCCHHHHHHHHHHH----hhhcccccccccccc
Confidence 3333344443 468999999994222222222221 222678888887544
No 69
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=25.08 E-value=1.1e+02 Score=27.66 Aligned_cols=40 Identities=25% Similarity=0.402 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHH-HHHhhCC
Q 024870 19 SCLADYVYQISEAAIRERGSFSLVLSGGDMPNR-LGKLTRP 58 (261)
Q Consensus 19 ~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~-l~~~L~~ 58 (261)
+.+++.+.+.++.+.++.+.-.|+|+||.--.. +.+.|.+
T Consensus 240 ~~l~~~l~~~~~~~~~~~g~~~vvlsGGVa~N~~L~~~l~~ 280 (305)
T TIGR00329 240 ETAFDHLIEKTKRALKDTGPKELVLVGGVSANKRLREMLET 280 (305)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHH
Confidence 555666666777777767777899999976533 4455543
No 70
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=24.92 E-value=4.4e+02 Score=25.27 Aligned_cols=107 Identities=13% Similarity=0.110 Sum_probs=59.8
Q ss_pred CCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHH--HHHhhCCCCCCCCCCCcEEEEEec--ccc
Q 024870 3 RREPELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNR--LGKLTRPPFLRTVDWSKWHVFWAE--ENV 78 (261)
Q Consensus 3 ~~~~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~--l~~~L~~~~~~~i~w~~v~~f~~D--Er~ 78 (261)
+.+.+++.++|.+|+.+.+.+.+ ++++.-.|+.++--+-.. |.+.|.+. .+ .++..| ||+
T Consensus 62 ~~g~~v~~a~t~~eA~~~v~~i~--------~~~~~~~vv~~kS~~~eeigl~~~L~~~---g~-----~~~etdlge~i 125 (432)
T TIGR00273 62 QRGGHVYYAKTAEEARKIIGKVA--------QEKNGKKVVKSKSMVSEEIGLNEVLEKI---GI-----EVWETDLGELI 125 (432)
T ss_pred HCCCEEEEECCHHHHHHHHHHHH--------HHhCCCEEEEcCchHHHHhCCHHHHHhC---CC-----eeeeCccHHHH
Confidence 46688999999998877555444 355666787776544433 45667653 22 234333 444
Q ss_pred cCCCCc----------hhHHHHHHHHhcCCCCCCCCcEEcCCCCCCHHHHHHHHHHHHHHhhhcc
Q 024870 79 VPKRHP----------DSFYRQAQEAFISKVPILPAHVIPVSHGVPGESAANNYEFSIRQQVRKR 133 (261)
Q Consensus 79 vp~~~~----------~Sn~~~~~~~ll~~~~ip~~~i~~~~~~~~~~~~a~~y~~~i~~~~~~~ 133 (261)
|...+. .-+...+.+.|-+.++.+ ...++++-...-.+.+++.+...
T Consensus 126 ~ql~~~~pshiv~Paih~~r~~i~~~f~~~~~~~--------~~~~~~~l~~~~r~~lR~~~~~a 182 (432)
T TIGR00273 126 LQLDGDPPSHIVVPALHKNRQQIGEILKERLGYE--------GEESPEVLAREARKFMREKFLSA 182 (432)
T ss_pred hhhccCCCceeeeccccCCHHHHHHHHHHhccCC--------CCCCHHHHHHHHHHHHHHHHhcC
Confidence 222211 235556666665555432 22466665555566666654433
No 71
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=24.85 E-value=2e+02 Score=24.44 Aligned_cols=63 Identities=10% Similarity=-0.048 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh-cCcEEEEEcCCCc--HHHHHHhhCCCCCCCCCCCcEEE-EEecccccC
Q 024870 16 ELDSCLADYVYQISEAAIRE-RGSFSLVLSGGDM--PNRLGKLTRPPFLRTVDWSKWHV-FWAEENVVP 80 (261)
Q Consensus 16 ~l~~~~A~~i~~~i~~~i~~-~~~~~l~lsGG~t--p~~l~~~L~~~~~~~i~w~~v~~-f~~DEr~vp 80 (261)
+-..+++..+.+.+...++. .+++.++++|.+- -..+.+.|.... .-+-..+.+ +.+|.+..|
T Consensus 10 ~~~~~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l--~~~~g~~~v~i~~D~~~~~ 76 (229)
T PRK09270 10 EEIEAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALL--QQDGELPAIQVPMDGFHLD 76 (229)
T ss_pred HhHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHh--hhccCCceEEEecccccCC
Confidence 33455566666666565555 6778999987753 233445555431 011133445 778876544
No 72
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=24.32 E-value=2e+02 Score=27.00 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=19.3
Q ss_pred cHHHHHHhhCCCCCCCCCCCcEEEEEeccc
Q 024870 48 MPNRLGKLTRPPFLRTVDWSKWHVFWAEEN 77 (261)
Q Consensus 48 tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr 77 (261)
||..+.+.+... .++.+++.++-+||-
T Consensus 130 Tp~rl~~~~~~~---~~~~~~v~~lViDEa 156 (434)
T PRK11192 130 TPGRLLQYIKEE---NFDCRAVETLILDEA 156 (434)
T ss_pred ChHHHHHHHHcC---CcCcccCCEEEEECH
Confidence 555566655443 577889999999993
No 73
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=24.29 E-value=1.3e+02 Score=27.37 Aligned_cols=40 Identities=23% Similarity=0.359 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHH-HHHhhCC
Q 024870 19 SCLADYVYQISEAAIRERGSFSLVLSGGDMPNR-LGKLTRP 58 (261)
Q Consensus 19 ~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~-l~~~L~~ 58 (261)
+.+++.+.+.++...++.+.-+|+|+||---.. +.+.|.+
T Consensus 224 ~~l~~~l~~~a~~~~~~~g~~~lvlsGGVa~N~~L~~~l~~ 264 (322)
T TIGR03722 224 ETAFAMLVEVTERALAHTGKKEVLLVGGVAANRRLREMLEL 264 (322)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHH
Confidence 444555555666666666777899999976544 3444443
No 74
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=24.06 E-value=1.9e+02 Score=20.76 Aligned_cols=21 Identities=14% Similarity=0.233 Sum_probs=15.5
Q ss_pred cccEEEecCCCCCcccccCCC
Q 024870 145 QFDLVLLTLGTRCDVASIYPN 165 (261)
Q Consensus 145 ~~Dl~lLG~G~DGH~aslfP~ 165 (261)
.+|++++|....+.....|-|
T Consensus 93 ~~dlvvig~~~~~~~~~~~~~ 113 (130)
T cd00293 93 GADLIVMGSRGRSGLRRLLLG 113 (130)
T ss_pred CCCEEEEcCCCCCccceeeec
Confidence 589999999877776554444
No 75
>PF09793 AD: Anticodon-binding domain; InterPro: IPR019181 Sm and Sm-like proteins of the Lsm (like Sm) domain family are generally involved in essential RNA-processing tasks []. All the LSM proteins are evolutionarily conserved in eukaryotes with an N-terminal Lsm domain to bind nucleic acids, followed by an as yet uncharacterised C-terminal region, some of which have a C-terminal methyltransferase domain. This entry represents the central region of approximately 100 residues, which is conserved from plants to humans and is frequently found in association with Lsm domain-containing proteins.
Probab=23.96 E-value=61 Score=23.83 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=29.0
Q ss_pred CCCcH--HHHHHhhCCCCCCCCCCCcEEEEEecccc-cCCCCchh
Q 024870 45 GGDMP--NRLGKLTRPPFLRTVDWSKWHVFWAEENV-VPKRHPDS 86 (261)
Q Consensus 45 GG~tp--~~l~~~L~~~~~~~i~w~~v~~f~~DEr~-vp~~~~~S 86 (261)
-|-|| +.+|+.|.+.. .+..|+.=.|.-+||-. -||-.+++
T Consensus 30 ~~vs~egQ~lF~~l~Kt~-~dv~W~g~~IiV~d~V~I~pPY~~~n 73 (91)
T PF09793_consen 30 PGVSPEGQKLFDALSKTI-PDVRWDGKNIIVLDEVKISPPYKVEN 73 (91)
T ss_pred CCcCHHHHHHHHHHHhhC-CCCEECCCeEEEeCceEEcCCCCccc
Confidence 47777 55899998753 24789888999999854 55554443
No 76
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=23.90 E-value=2.2e+02 Score=26.60 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=19.5
Q ss_pred cHHHHHHhhCCCCCCCCCCCcEEEEEeccc
Q 024870 48 MPNRLGKLTRPPFLRTVDWSKWHVFWAEEN 77 (261)
Q Consensus 48 tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr 77 (261)
||..+++.+.+. .++++++.++-+||-
T Consensus 140 TP~~l~~~l~~~---~~~l~~v~~lViDEa 166 (423)
T PRK04837 140 TTGRLIDYAKQN---HINLGAIQVVVLDEA 166 (423)
T ss_pred CHHHHHHHHHcC---CcccccccEEEEecH
Confidence 455555555443 678899999999994
No 77
>PTZ00110 helicase; Provisional
Probab=23.49 E-value=1.4e+02 Score=29.31 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=31.3
Q ss_pred cHHHHHHhhCCCCCCCCCCCcEEEEEecccc--cCCCCchhHHHHHHHHhcCCCCCCCCcEEcCCCC
Q 024870 48 MPNRLGKLTRPPFLRTVDWSKWHVFWAEENV--VPKRHPDSFYRQAQEAFISKVPILPAHVIPVSHG 112 (261)
Q Consensus 48 tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~--vp~~~~~Sn~~~~~~~ll~~~~ip~~~i~~~~~~ 112 (261)
||..|.+.|.+. .++.+++.++-+||-- +.. .+...+++ +++.+. +..++..+-.+
T Consensus 260 TPgrL~d~l~~~---~~~l~~v~~lViDEAd~mld~----gf~~~i~~-il~~~~-~~~q~l~~SAT 317 (545)
T PTZ00110 260 CPGRLIDFLESN---VTNLRRVTYLVLDEADRMLDM----GFEPQIRK-IVSQIR-PDRQTLMWSAT 317 (545)
T ss_pred CHHHHHHHHHcC---CCChhhCcEEEeehHHhhhhc----chHHHHHH-HHHhCC-CCCeEEEEEeC
Confidence 566666666543 4678999999999943 321 23344444 334442 33455555433
No 78
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=23.36 E-value=2.1e+02 Score=24.31 Aligned_cols=79 Identities=15% Similarity=0.180 Sum_probs=43.2
Q ss_pred HHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEeccc-----c-cCCCCchhHHHHHHHHhcCCCCCC
Q 024870 29 SEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEEN-----V-VPKRHPDSFYRQAQEAFISKVPIL 102 (261)
Q Consensus 29 i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr-----~-vp~~~~~Sn~~~~~~~ll~~~~ip 102 (261)
+.+.++.+|.-++.+|||-+ .+-+.+++.+ .+|--.-..+..++. . -+.-+.+.-...+++ ++...+++
T Consensus 85 lv~~lk~~G~~v~iiSgg~~--~lv~~ia~~l--g~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~-~~~~~g~~ 159 (212)
T COG0560 85 LVAALKAAGAKVVIISGGFT--FLVEPIAERL--GIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRE-LAAELGIP 159 (212)
T ss_pred HHHHHHHCCCEEEEEcCChH--HHHHHHHHHh--CCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHH-HHHHcCCC
Confidence 34567789999999999944 4444444321 233333334444442 1 122233333444444 55677888
Q ss_pred CCcEEcC-CCC
Q 024870 103 PAHVIPV-SHG 112 (261)
Q Consensus 103 ~~~i~~~-~~~ 112 (261)
.++.+.+ |+.
T Consensus 160 ~~~~~a~gDs~ 170 (212)
T COG0560 160 LEETVAYGDSA 170 (212)
T ss_pred HHHeEEEcCch
Confidence 7787777 443
No 79
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=22.75 E-value=5.3e+02 Score=24.57 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhC
Q 024870 13 SCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTR 57 (261)
Q Consensus 13 ~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~ 57 (261)
+.++..+.+.+.+.+.++..+....++.+.||||--=..+...+.
T Consensus 230 ~~~~~~e~l~~~l~~aV~~r~~~~~~vg~~LSGGlDSs~iaa~a~ 274 (467)
T TIGR01536 230 SEEDLVDELRSLLEDAVKRRLVADVPVGVLLSGGLDSSLVAAIAR 274 (467)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCceEEEecCChhHHHHHHHHH
Confidence 566777777777777777666667788999999954444433333
No 80
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=22.44 E-value=7.8e+02 Score=24.54 Aligned_cols=35 Identities=20% Similarity=0.124 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCC
Q 024870 13 SCEELDSCLADYVYQISEAAIRERGSFSLVLSGGD 47 (261)
Q Consensus 13 ~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~ 47 (261)
+.++..+.+-+.+.+.++..+....++-+.||||-
T Consensus 214 ~~~~~~~~lr~~L~~AV~~rl~sdvpvGv~LSGGL 248 (586)
T PTZ00077 214 TGEIDLEEIREALEAAVRKRLMGDVPFGLFLSGGL 248 (586)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCceEEEecCCc
Confidence 44455555666666666565556678899999994
No 81
>PRK09604 UGMP family protein; Validated
Probab=22.42 E-value=1.2e+02 Score=27.78 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHH-HHHhhCC
Q 024870 19 SCLADYVYQISEAAIRERGSFSLVLSGGDMPNR-LGKLTRP 58 (261)
Q Consensus 19 ~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~-l~~~L~~ 58 (261)
+.+++.+.+.++.+.++.+.-+|+|+||.--.. +.+.|.+
T Consensus 236 ~~l~~~l~~~~~~~~~~~~~~~lvlsGGVa~N~~L~~~l~~ 276 (332)
T PRK09604 236 AAVVDVLVIKTKRALKQTGVKTLVVAGGVAANSGLRERLAE 276 (332)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEcChHHHHHHHHHHHHH
Confidence 555666667776776666777899999976544 3444443
No 82
>PLN02772 guanylate kinase
Probab=22.28 E-value=88 Score=29.70 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=48.1
Q ss_pred CCCcccccCCCCCCC-------CCCCceEEEec-CCCCCCeeEcCHHH-------HHhcCceEEE--EcCCCcHHHHHHH
Q 024870 155 TRCDVASIYPNNPVL-------QEDSQWVAWVS-SNAPRESVTLTLPV-------INAAANVAIV--ASGIDVARPFLHV 217 (261)
Q Consensus 155 ~DGH~aslfP~~~~l-------~~~~~~~~~~~-~~~p~~riTlt~~~-------I~~A~~i~ll--~~G~~Ka~~v~~~ 217 (261)
-|||+|...-+...| .++.-|+..++ |.+..++=.+|=.+ ....++++++ .+|..|..+++++
T Consensus 76 r~GhSa~v~~~~rilv~~~~~~~~~~~w~l~~~t~~~~~~~~~~~~eV~~~~~~~~~~~~k~iVlsGPSGvGKsTL~~~L 155 (398)
T PLN02772 76 CKGYSAVVLNKDRILVIKKGSAPDDSIWFLEVDTPFVREQKKLLGTEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISML 155 (398)
T ss_pred CCcceEEEECCceEEEEeCCCCCccceEEEEcCCHHHHhhcccccceeeecccCCCCCCCcEEEEECCCCCCHHHHHHHH
Confidence 367777665443321 12344666555 33333333333332 2334445444 4678899999999
Q ss_pred hcCCCCCcccccccccc------cCCeEEEEecHHHHhc
Q 024870 218 MMDQKPNRRLPAQLVSP------KDGKLVWFADASAASF 250 (261)
Q Consensus 218 l~~~~~~~~~Pas~l~~------~~~~v~~~~D~~Aa~~ 250 (261)
+...+..-.++.+.-.. .++.-++|++.+.-..
T Consensus 156 ~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~ 194 (398)
T PLN02772 156 MKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEK 194 (398)
T ss_pred hhhccccccccccccCCCCcccccCCceEeeCCHHHHHH
Confidence 87543111233333221 1233478887655443
No 83
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=21.82 E-value=3.8e+02 Score=25.05 Aligned_cols=79 Identities=19% Similarity=0.137 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcC--cEEEEEcCCCcH-HHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCch--hH
Q 024870 13 SCEELDSCLADYVYQISEAAIRERG--SFSLVLSGGDMP-NRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPD--SF 87 (261)
Q Consensus 13 ~~~~l~~~~A~~i~~~i~~~i~~~~--~~~l~lsGG~tp-~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~~--Sn 87 (261)
+.+|+..-+.++.++.|.+.+++.. .-.|.++||..= ..|.+.|.+. +..+.+.-.||.-+|++..+ -+
T Consensus 258 ~~~D~~aTlt~~TA~sI~~~i~~~~~~~~~v~v~GGGa~N~~L~~~L~~~------l~~~~v~~~~~~gi~~~~~EA~aF 331 (364)
T PF03702_consen 258 SPEDILATLTEFTAQSIADAIRRFPPQPDEVYVCGGGARNPFLMERLQER------LPGIPVKTTDELGIPPDAKEAMAF 331 (364)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH-TT-EEEEEESGGGG-HHHHHHHHHH-------TTCEEEEGGGGTS-CCCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEECCCcCCHHHHHHHHhh------CCCCEEecHHHcCCCHHHHHHHHH
Confidence 3677777777777777777776543 468889988654 4566777753 34578899999889998877 45
Q ss_pred HHHHHHHhcC
Q 024870 88 YRQAQEAFIS 97 (261)
Q Consensus 88 ~~~~~~~ll~ 97 (261)
..+..+.+.+
T Consensus 332 A~La~~~~~g 341 (364)
T PF03702_consen 332 AWLAYRRLNG 341 (364)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHHcC
Confidence 6666776654
No 84
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=21.35 E-value=2.5e+02 Score=25.52 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCC-CCCCCCCcEEEEEecccc
Q 024870 27 QISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPF-LRTVDWSKWHVFWAEENV 78 (261)
Q Consensus 27 ~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~-~~~i~w~~v~~f~~DEr~ 78 (261)
..|+++.++-+...+++|||..-..+..++.+.+ ...+ .+.++++|.-+
T Consensus 10 ~ilRe~~~~f~~~vv~~SGGKDS~VlLhLa~kaf~~~~~---p~~vl~IDTG~ 59 (294)
T TIGR02039 10 HIIREVAAEFERPVMLYSIGKDSSVLLHLARKAFYPGPL---PFPLLHVDTGW 59 (294)
T ss_pred HHHHHHHHhcCCcEEEEecChHHHHHHHHHHHHhcccCC---CeEEEEEecCC
Confidence 3445565655556788999987777777776542 1122 47889999865
No 85
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=20.94 E-value=5.9e+02 Score=22.67 Aligned_cols=77 Identities=16% Similarity=0.100 Sum_probs=46.0
Q ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCc-
Q 024870 6 PELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHP- 84 (261)
Q Consensus 6 ~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~- 84 (261)
.+++-++|.+++.+.+.+ .+ =++-|+.|+.....|..+. ++++|.+ |++|+-++
T Consensus 109 d~~~~V~d~~ea~~~~~~------------~~-~rVflt~G~~~l~~f~~~~-------~~~~~~~-----Rvlp~~~~~ 163 (257)
T COG2099 109 DNWIEVADIEEAAEAAKQ------------LG-RRVFLTTGRQNLAHFVAAD-------AHSHVLA-----RVLPPPDVL 163 (257)
T ss_pred CceEEecCHHHHHHHHhc------------cC-CcEEEecCccchHHHhcCc-------ccceEEE-----EEcCchHHH
Confidence 467777787776653222 22 3556677777766665544 3454443 77775543
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEcCCCCCCHH
Q 024870 85 DSFYRQAQEAFISKVPILPAHVIPVSHGVPGE 116 (261)
Q Consensus 85 ~Sn~~~~~~~ll~~~~ip~~~i~~~~~~~~~~ 116 (261)
.++. .+++|.++++.+.+.-+.+
T Consensus 164 ~~~~---------~~~~p~~~Iia~~GPfs~~ 186 (257)
T COG2099 164 AKCE---------DLGVPPARIIAMRGPFSEE 186 (257)
T ss_pred HHHH---------hcCCChhhEEEecCCcChH
Confidence 2332 4678999999987754433
No 86
>PRK13981 NAD synthetase; Provisional
Probab=20.93 E-value=2.4e+02 Score=27.62 Aligned_cols=57 Identities=14% Similarity=0.022 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc--CcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccc
Q 024870 14 CEELDSCLADYVYQISEAAIRER--GSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENV 78 (261)
Q Consensus 14 ~~~l~~~~A~~i~~~i~~~i~~~--~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~ 78 (261)
.+++.+++.. .|++.+++. +.+.|+||||--=..+..++.+. +.-++|+-+.+.-++
T Consensus 260 ~~~~~~~l~~----~l~~~~~~~~~~~~vvglSGGiDSa~~a~la~~a----~g~~~v~~~~~p~~~ 318 (540)
T PRK13981 260 EAEDYRALVL----GLRDYVRKNGFPGVVLGLSGGIDSALVAAIAVDA----LGAERVRAVMMPSRY 318 (540)
T ss_pred HHHHHHHHHH----HHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHH----hCcCcEEEEECCCCC
Confidence 3445544444 444555554 68899999994333333333332 222578877777654
No 87
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=20.67 E-value=1.4e+02 Score=22.55 Aligned_cols=14 Identities=21% Similarity=0.420 Sum_probs=12.4
Q ss_pred cccEEEecCCCCCc
Q 024870 145 QFDLVLLTLGTRCD 158 (261)
Q Consensus 145 ~~Dl~lLG~G~DGH 158 (261)
.+|++++|.|..++
T Consensus 52 ~peiliiGTG~~~~ 65 (109)
T cd00248 52 RPDILLIGTGAEIA 65 (109)
T ss_pred CCCEEEEcCCCCCC
Confidence 47999999999885
No 88
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=20.61 E-value=1.7e+02 Score=24.65 Aligned_cols=42 Identities=17% Similarity=-0.027 Sum_probs=29.7
Q ss_pred HHHHHHhcC-cEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecc
Q 024870 29 SEAAIRERG-SFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEE 76 (261)
Q Consensus 29 i~~~i~~~~-~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DE 76 (261)
|+.+++.-+ .+.+..|||..-..+..++.+.. .++.+|++|-
T Consensus 5 l~~a~~~~~~~~~~s~SgGKDS~Vll~L~~~~~------~~~~v~f~DT 47 (212)
T TIGR00434 5 IAWAYVTFGGHLVYSTSFGIQGAVLLDLVSKIS------PDIPVIFLDT 47 (212)
T ss_pred HHHHHHhcCCCEEEEecCCHHHHHHHHHHHhcC------CCCcEEEecC
Confidence 445555555 78999999988888888776531 3467888886
Done!