Query 024870
Match_columns 261
No_of_seqs 149 out of 1135
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 15:50:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024870.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024870hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ico_A 6PGL, 6-phosphogluconol 100.0 3.8E-69 1.3E-73 477.8 22.4 239 4-252 22-267 (268)
2 3tx2_A Probable 6-phosphogluco 100.0 2.5E-69 8.7E-74 475.1 21.0 236 6-251 8-250 (251)
3 3oc6_A 6-phosphogluconolactona 100.0 4.7E-69 1.6E-73 472.6 20.9 235 5-251 7-248 (248)
4 3eb9_A 6-phosphogluconolactona 100.0 4.8E-67 1.6E-71 464.2 21.3 245 5-253 4-265 (266)
5 3hn6_A Glucosamine-6-phosphate 100.0 7.5E-65 2.6E-69 454.5 24.4 235 3-254 19-271 (289)
6 3css_A 6-phosphogluconolactona 100.0 2.7E-64 9.1E-69 446.9 16.4 248 1-252 1-266 (267)
7 3lwd_A 6-phosphogluconolactona 100.0 1.5E-63 5.1E-68 431.9 17.2 218 5-242 2-225 (226)
8 3lhi_A Putative 6-phosphogluco 100.0 4.6E-62 1.6E-66 424.3 19.4 216 5-241 2-230 (232)
9 3nwp_A 6-phosphogluconolactona 100.0 3.6E-62 1.2E-66 425.1 18.7 217 5-241 5-231 (233)
10 1y89_A DEVB protein; structura 100.0 2.2E-61 7.7E-66 421.5 21.7 232 6-251 2-237 (238)
11 3e15_A Glucose-6-phosphate 1-d 100.0 2.4E-61 8.2E-66 434.1 18.1 233 4-248 25-296 (312)
12 1vl1_A 6PGL, 6-phosphogluconol 100.0 3.9E-61 1.3E-65 418.4 18.8 217 6-245 14-232 (232)
13 1ne7_A Glucosamine-6-phosphate 100.0 1.3E-54 4.6E-59 388.7 23.3 230 6-252 1-248 (289)
14 2bkx_A Glucosamine-6-phosphate 100.0 1.3E-53 4.3E-58 372.6 21.7 225 6-251 1-241 (242)
15 1fs5_A Glucosamine-6-phosphate 100.0 3.1E-53 1.1E-57 375.3 22.7 230 6-252 1-248 (266)
16 2ri0_A Glucosamine-6-phosphate 100.0 1.1E-50 3.8E-55 352.4 23.4 219 5-251 1-234 (234)
17 2okg_A Central glycolytic gene 99.9 2.2E-25 7.6E-30 195.8 7.3 202 6-252 23-252 (255)
18 2r5f_A Transcriptional regulat 99.9 2.8E-24 9.7E-29 189.7 11.8 193 15-251 41-262 (264)
19 2gnp_A Transcriptional regulat 99.9 6.8E-23 2.3E-27 181.0 10.5 197 15-252 41-260 (266)
20 2o0m_A Transcriptional regulat 99.8 2.6E-22 8.8E-27 183.4 4.5 197 14-253 124-341 (345)
21 2w48_A Sorbitol operon regulat 99.8 6.5E-21 2.2E-25 172.0 11.4 196 14-251 92-313 (315)
22 3nze_A Putative transcriptiona 99.6 5.9E-15 2E-19 130.2 13.4 197 16-254 37-264 (267)
23 3efb_A Probable SOR-operon reg 99.3 7.4E-12 2.5E-16 110.2 11.7 194 16-251 45-264 (266)
24 3kv1_A Transcriptional repress 99.3 5.1E-12 1.8E-16 111.3 6.8 196 15-251 39-259 (267)
25 1t35_A Hypothetical protein YV 70.0 4.9 0.00017 32.8 4.4 83 32-122 93-176 (191)
26 1wxi_A NH(3)-dependent NAD(+) 50.3 14 0.00048 31.6 4.0 30 13-46 18-50 (275)
27 1ydh_A AT5G11950; structural g 42.8 11 0.00037 31.4 2.0 43 33-78 102-147 (216)
28 3qua_A Putative uncharacterize 42.6 12 0.00041 30.7 2.2 78 34-121 115-195 (199)
29 3fiu_A NH(3)-dependent NAD(+) 42.1 21 0.00073 30.0 3.8 31 13-47 8-40 (249)
30 2dpl_A GMP synthetase, GMP syn 42.1 31 0.0011 29.9 5.0 69 24-102 9-77 (308)
31 1kqp_A NAD+ synthase, NH(3)-de 41.2 21 0.00071 30.4 3.7 30 13-46 17-48 (271)
32 1sur_A PAPS reductase; assimil 40.5 23 0.0008 28.6 3.7 66 26-102 33-99 (215)
33 1xng_A NH(3)-dependent NAD(+) 39.5 31 0.001 29.1 4.4 58 13-77 4-61 (268)
34 1wy5_A TILS, hypothetical UPF0 39.0 31 0.0011 29.8 4.5 45 33-78 21-65 (317)
35 3fe2_A Probable ATP-dependent 38.3 51 0.0018 26.7 5.6 95 7-114 105-218 (242)
36 1wek_A Hypothetical protein TT 38.0 16 0.00056 30.2 2.4 83 32-122 127-210 (217)
37 2oq2_A Phosphoadenosine phosph 37.9 22 0.00076 29.9 3.3 52 25-79 30-81 (261)
38 3sbx_A Putative uncharacterize 35.7 14 0.00047 30.1 1.5 42 34-78 106-150 (189)
39 3q4g_A NH(3)-dependent NAD(+) 34.7 31 0.001 29.7 3.7 31 13-47 19-51 (279)
40 2l32_A Small archaeal modifier 34.5 28 0.00096 23.6 2.8 37 40-83 14-50 (74)
41 3p52_A NH(3)-dependent NAD(+) 33.4 42 0.0014 28.1 4.3 57 13-78 5-63 (249)
42 3tqi_A GMP synthase [glutamine 33.2 1.8E+02 0.0061 27.1 9.0 67 26-102 221-287 (527)
43 3dpi_A NAD+ synthetase; ssgcid 32.0 51 0.0017 28.4 4.6 31 13-47 25-57 (285)
44 2e18_A NH(3)-dependent NAD(+) 28.7 49 0.0017 27.5 3.9 54 14-77 6-59 (257)
45 2a7y_A Hypothetical protein RV 28.7 29 0.001 24.3 2.0 23 143-168 37-59 (83)
46 3ca8_A Protein YDCF; two domai 28.3 1.7E+02 0.0058 24.7 7.3 45 83-127 94-138 (266)
47 2o8v_A Phosphoadenosine phosph 27.5 44 0.0015 27.9 3.4 47 26-78 34-81 (252)
48 2a33_A Hypothetical protein; s 24.4 40 0.0014 27.8 2.5 44 32-78 105-151 (215)
49 3ice_A Transcription terminati 22.5 2.1E+02 0.0073 26.0 7.1 151 62-232 132-297 (422)
50 1gpm_A GMP synthetase, XMP ami 22.3 1.1E+02 0.0036 28.6 5.3 68 25-102 217-284 (525)
51 2i4i_A ATP-dependent RNA helic 22.3 1.3E+02 0.0043 26.0 5.6 64 7-78 104-185 (417)
52 1q0u_A Bstdead; DEAD protein, 22.0 1.2E+02 0.0042 23.7 5.0 27 48-77 133-159 (219)
53 1q15_A CARA; CMPR, (2S,5S)-5-c 21.9 1.9E+02 0.0066 26.6 7.0 75 12-95 214-288 (503)
54 3n05_A NH(3)-dependent NAD(+) 20.9 78 0.0027 30.0 4.1 55 14-77 306-363 (590)
55 2fvt_A Conserved hypothetical 20.9 45 0.0015 25.4 2.0 16 143-158 65-80 (135)
56 1wrb_A DJVLGB; RNA helicase, D 20.8 1.6E+02 0.0054 23.7 5.6 65 6-78 102-184 (253)
57 3eno_A Putative O-sialoglycopr 20.8 96 0.0033 27.1 4.4 40 19-58 231-271 (334)
58 3bor_A Human initiation factor 20.7 1.3E+02 0.0046 24.0 5.1 27 48-77 156-182 (237)
59 1jgt_A Beta-lactam synthetase; 20.4 70 0.0024 29.8 3.6 36 12-47 217-252 (513)
60 1qde_A EIF4A, translation init 20.2 1.5E+02 0.005 23.2 5.2 28 48-78 138-165 (224)
61 1vec_A ATP-dependent RNA helic 20.1 1.6E+02 0.0055 22.6 5.3 64 7-78 74-156 (206)
No 1
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.8e-69 Score=477.75 Aligned_cols=239 Identities=26% Similarity=0.426 Sum_probs=218.6
Q ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCC
Q 024870 4 REPELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRH 83 (261)
Q Consensus 4 ~~~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~ 83 (261)
++|++++|+|.+++++.+|++|++.+++++++++.++|+||||+||..+|+.|++.+ ..+||+||++||+||||||++|
T Consensus 22 ~~m~i~v~~~~~~l~~~~A~~i~~~i~~ai~~~~~~~l~LsgGstP~~~y~~L~~~~-~~idw~~v~~f~~DEr~vp~~~ 100 (268)
T 3ico_A 22 MSSSIEIFPDSDILVAAAGKRLVGAIGAAVAARGQALIVLTGGGNGIALLRYLSAQA-QQIEWSKVHLFWGDERYVPEDD 100 (268)
T ss_dssp --CEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEEECCSHHHHHHHHHHHHHG-GGSCGGGEEEEESEEECSCTTC
T ss_pred cccceEecCCcchhhhhhcchhhhHhHHHHHhcCceEEEEecCCchhHHHHHHHHHh-hhhhheeeEEeecccccCCCCc
Confidence 468999999999999999999999999999999999999999999999999998733 4799999999999999999999
Q ss_pred chhHHHHHHHHhcCCCCCCCCcEEcCCCC-----CCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCc
Q 024870 84 PDSFYRQAQEAFISKVPILPAHVIPVSHG-----VPGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCD 158 (261)
Q Consensus 84 ~~Sn~~~~~~~ll~~~~ip~~~i~~~~~~-----~~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH 158 (261)
++||+++|+++||++++||++|||++++. .+++++|++|++.|++.++... +.|+|||+|||||+|||
T Consensus 101 ~~Sn~~~~~~~Ll~~v~i~~~~i~~~~~~~~~~~~~~~~~a~~Ye~~i~~~~~~~~-------~~p~~Dl~lLGmG~DGH 173 (268)
T 3ico_A 101 DERNLKQARRALLNHVDIPSNQVHPMAASDGDFGGDLDAAALAYEQVLAASAAPGD-------PAPNFDVHLLGMGPEGH 173 (268)
T ss_dssp TTCHHHHHHHHTGGGSCCCGGGBCCCCCTTSTTTTCHHHHHHHHHHHHHHHSSTTC-------SSCCCSEEEECCCTTCC
T ss_pred chhHHHHHHHHHHhccCCcccccccccccCCCcccchhHHHHHHHHHHhhccCCCC-------CCCCcceEEeccCCccc
Confidence 99999999999999999999999999875 5899999999999998764321 35789999999999999
Q ss_pred ccccCCCCCCCCCCCceEEEec--CCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCcccccccccccC
Q 024870 159 VASIYPNNPVLQEDSQWVAWVS--SNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRLPAQLVSPKD 236 (261)
Q Consensus 159 ~aslfP~~~~l~~~~~~~~~~~--~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~Pas~l~~~~ 236 (261)
|||||||++.+.+++++++.+. +++|++|||||+++|++||+|+|+++|++|+++|+++++++++ .++|||+++ .|
T Consensus 174 ~as~fPg~~~~~~t~~~vv~~~~~~~~P~~rITlt~~~I~~Ar~i~ll~~G~~Ka~av~~~l~g~~~-~~~Pas~l~-~h 251 (268)
T 3ico_A 174 INSLFPHSPAVLESTRMVVAVDDSPKPPPRRITLTLPAIQRSREVWLLVSGPGKADAVAAAIGGADP-VSVPAAGAV-GR 251 (268)
T ss_dssp BTTBCTTCHHHHCSSCSEEEESCCSSSSSCEEEECHHHHTTSSEEEEEECSGGGHHHHHHHHTTCCT-TTSGGGGCC-CS
T ss_pred ccccCCCChhhhhhceEEEEecCCCCCCCceEEEechhhhccceEEEEecCCCchHHHHHHhcCCCC-ccccccccc-cc
Confidence 9999999988877777666554 7889999999999999999999999999999999999999874 789999999 59
Q ss_pred CeEEEEecHHHHhccc
Q 024870 237 GKLVWFADASAASFFL 252 (261)
Q Consensus 237 ~~v~~~~D~~Aa~~l~ 252 (261)
++++||+|++||++|.
T Consensus 252 ~~~~~~lD~~Aa~~L~ 267 (268)
T 3ico_A 252 QNTLWLLDRDAAAKLP 267 (268)
T ss_dssp SEEEEEEEHHHHTTCC
T ss_pred cceEEEecchhhhhCC
Confidence 9999999999999884
No 2
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A {Mycobacterium abscessus}
Probab=100.00 E-value=2.5e-69 Score=475.05 Aligned_cols=236 Identities=28% Similarity=0.440 Sum_probs=217.4
Q ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCch
Q 024870 6 PELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPD 85 (261)
Q Consensus 6 ~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~~ 85 (261)
+++++|+|.+++++.+|++|++.+++++++++.++|+||||+||..+|+.|++.+ ..+||+||++||+||||||++|++
T Consensus 8 ~~i~i~~~~~~l~~~~A~~i~~~i~~a~~~~~~~~l~LsgGstP~~~y~~L~~~~-~~idw~~v~~f~~DEr~vp~~~~~ 86 (251)
T 3tx2_A 8 TIIEKYADTDALVTAAGDRLASAITGALAERGKAMIVLTGGGTGIALLKHLRDVA-SGLDWTNVHVFWGDDRYVPKTDPE 86 (251)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEEECCSHHHHHHHHHHHHHH-TTSCGGGEEEEESEEESSCTTCTT
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhc-cCCCCceeEEEeeeeccCCCCChH
Confidence 5899999999999999999999999999999999999999999999999998732 479999999999999999999999
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEcCCCC-----CCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCccc
Q 024870 86 SFYRQAQEAFISKVPILPAHVIPVSHG-----VPGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVA 160 (261)
Q Consensus 86 Sn~~~~~~~ll~~~~ip~~~i~~~~~~-----~~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~a 160 (261)
||+++|+++||++++||++|+|++++. .+++++|++|++.|+++++... +.|+|||+|||||+|||||
T Consensus 87 Sn~~~~~~~ll~~v~i~~~~i~~~~~~~~~~~~~~~~~a~~Ye~~i~~~~~~~~-------~~~~~Dl~lLG~G~DGH~a 159 (251)
T 3tx2_A 87 RNAWQAWEALLEHVNFPLRNMHAMPNSESEYGTDLDAAALAYEQLLAANAEPGQ-------DCPAFDVHLLGMGGEGHIN 159 (251)
T ss_dssp CHHHHHHHHTGGGSCCCGGGBCCCCCTTSSCTTCHHHHHHHHHHHHHHTSCTTC-------SSCCCSEEEECCCTTCCBT
T ss_pred HHHHHHHHHhhccCCCCHHHEEECCCcccccCCCHHHHHHHHHHHHHhhhcccc-------CCCCCCEEEECCCCCCceE
Confidence 999999999999999999999999875 4899999999999998776431 2678999999999999999
Q ss_pred ccCCCCCCCCCCCceEEEec--CCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCcccccccccccCCe
Q 024870 161 SIYPNNPVLQEDSQWVAWVS--SNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRLPAQLVSPKDGK 238 (261)
Q Consensus 161 slfP~~~~l~~~~~~~~~~~--~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~Pas~l~~~~~~ 238 (261)
|||||++.+.++.++++.+. +++|++|||||+++|++||+|+|+++|++|+++|+++++++++ .++|||+++ .|++
T Consensus 160 s~fPg~~~~~~~~~~vv~~~~~~~~P~~riTlt~~~I~~Ar~i~ll~~G~~Ka~av~~~l~g~~~-~~~Pas~l~-~h~~ 237 (251)
T 3tx2_A 160 SLFPHTDAVKETQRLVVAVPDSPKPPPQRITLTLPAIQRSREVWLVVSGEAKADAVAAAVGGADP-VDVPAAGAK-GIER 237 (251)
T ss_dssp TBCTTCHHHHCSSCSEEEESCCSSSSSCEEEECHHHHTTSSEEEEEECSGGGHHHHHHHHTTCCT-TTSGGGGCC-CSSE
T ss_pred EcCCcChhhccCcceEEEecCCCCCCCcEEEECHHHHHhcCeEEEEEeCHHHHHHHHHHHhCCCC-CCCChHHhc-cCCC
Confidence 99999988777766666554 7889999999999999999999999999999999999999874 689999999 5999
Q ss_pred EEEEecHHHHhcc
Q 024870 239 LVWFADASAASFF 251 (261)
Q Consensus 239 v~~~~D~~Aa~~l 251 (261)
++||+|++||++|
T Consensus 238 ~~~~~D~~Aa~~L 250 (251)
T 3tx2_A 238 TVWLLDEAAASQL 250 (251)
T ss_dssp EEEEEETTTTTTC
T ss_pred EEEEEeHHHHhhc
Confidence 9999999999876
No 3
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis}
Probab=100.00 E-value=4.7e-69 Score=472.56 Aligned_cols=235 Identities=28% Similarity=0.449 Sum_probs=217.4
Q ss_pred CCeEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCc
Q 024870 5 EPELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHP 84 (261)
Q Consensus 5 ~~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~ 84 (261)
.++|++|+|.+++++.+|++|++.+++++++++.++|+||||+||..+|+.|++.+ ..+||+||++||+||||||++|+
T Consensus 7 ~~~i~i~~~~~~l~~~~A~~i~~~i~~~~~~~~~~~l~LsgGstP~~~y~~L~~~~-~~idw~~v~~f~~DEr~vp~~~~ 85 (248)
T 3oc6_A 7 DTVIERHADTAALVAAAGDRLVDAISSAIGERGQATIVLTGGGTGIGLLKRVRERS-GEIDWSKVHIYWGDERFVPQDDD 85 (248)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEEECCSHHHHHHHHHHHHTG-GGSCGGGEEEEESEEECSCTTCT
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHhhc-cCCCcceEEEEEeeeccCCCCCh
Confidence 35899999999999999999999999999999999999999999999999998744 47999999999999999999999
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEcCCCC-----CCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCcc
Q 024870 85 DSFYRQAQEAFISKVPILPAHVIPVSHG-----VPGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDV 159 (261)
Q Consensus 85 ~Sn~~~~~~~ll~~~~ip~~~i~~~~~~-----~~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~ 159 (261)
+||+++|+++||++++||++|+|++++. .+++++|++|++.|+++++. +.|+||++|||||+||||
T Consensus 86 ~Sn~~~~~~~ll~~v~i~~~~i~~~~~~~~~~~~~~~~~a~~Ye~~i~~~~~~---------~~~~~Dl~lLG~G~dGH~ 156 (248)
T 3oc6_A 86 ERNDKQAREALLDHIGIPPVNVHAMAASDGEFGDDLEAAAAGYAQLLSANFDS---------SVPGFDVHLLGMGGEGHV 156 (248)
T ss_dssp TCHHHHHHHHTGGGSCCCGGGBCCCCCTTSTTTTCHHHHHHHHHHHHHHHHTS---------SSCSEEEEEECCCTTCCB
T ss_pred HHHHHHHHHHhhccCCCChhhEEecCCcccccCCCHHHHHHHHHHHHHHhccc---------CCCCCCEEEECCCCCCCE
Confidence 9999999999999999999999999875 48999999999999987762 267899999999999999
Q ss_pred cccCCCCCCCCCCCceEEEec--CCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCcccccccccccCC
Q 024870 160 ASIYPNNPVLQEDSQWVAWVS--SNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRLPAQLVSPKDG 237 (261)
Q Consensus 160 aslfP~~~~l~~~~~~~~~~~--~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~Pas~l~~~~~ 237 (261)
||||||++.+.++.++++.+. +++|++|||||+++|++||+|+|+++|++|+++|+++++++++ .++|||+++ .|+
T Consensus 157 aslfPg~~~~~~~~~~vv~~~~~~~~P~~riTlt~~~I~~Ar~i~ll~~G~~Ka~av~~~l~g~~~-~~~Pas~l~-~h~ 234 (248)
T 3oc6_A 157 NSLFPDTDAVRETERLVVGVSDSPKPPPRRITLTLPAVQNSREVWLVVSGEAKADAVAAAVGGADP-VDIPAAGAV-GRE 234 (248)
T ss_dssp TTBCTTCHHHHCSSCSEEEESCCSSSSSCEEEECHHHHTTEEEEEEEECSGGGHHHHHHHHHTCCT-TTSGGGGCC-CSS
T ss_pred EEcCCCChhhccCcceEEEecCCCCCCCcEEEcCHHHHHhhCeEEEEEeCHHHHHHHHHHHcCCCC-CCCChHHhc-cCC
Confidence 999999988877766666554 7889999999999999999999999999999999999999874 689999999 599
Q ss_pred eEEEEecHHHHhcc
Q 024870 238 KLVWFADASAASFF 251 (261)
Q Consensus 238 ~v~~~~D~~Aa~~l 251 (261)
+++||+|++||++|
T Consensus 235 ~~~~~~D~~Aa~~L 248 (248)
T 3oc6_A 235 RTVWLVDEAAAAKL 248 (248)
T ss_dssp EEEEEEETTTTTTC
T ss_pred CEEEEEchHHhhCC
Confidence 99999999999875
No 4
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
Probab=100.00 E-value=4.8e-67 Score=464.18 Aligned_cols=245 Identities=23% Similarity=0.307 Sum_probs=213.7
Q ss_pred CCeEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCC-CcEEEEEecccccCCCC
Q 024870 5 EPELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDW-SKWHVFWAEENVVPKRH 83 (261)
Q Consensus 5 ~~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w-~~v~~f~~DEr~vp~~~ 83 (261)
.++|++|+|.+++++.+|++|++.+++++++++.++|+||||+||+.+|+.|++.++..+|| +||++||+||||||++|
T Consensus 4 ~~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~LsgGstP~~ly~~L~~~~~~~idw~~~v~~f~~DEr~vp~~~ 83 (266)
T 3eb9_A 4 KPTISVHATPQELSAAGCRKIVEIIEASGSQQWPLSIALAGGSTPKMTYARLHDEHLNLLREKRALRFFMGDERMVPADS 83 (266)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHHHHHHCGGGCSEEEEECCSHHHHHHHHHHHHHHHHHHTTSCCEEEEESEEESSCTTS
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHHHHHhhcCCChHHcEEEEeeeeeccCCCC
Confidence 57899999999999999999999999999999999999999999999999998544347999 99999999999999999
Q ss_pred chhHHHHHHHHhcCCCCCCCCcEEcCCCC-CCH---------HHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecC
Q 024870 84 PDSFYRQAQEAFISKVPILPAHVIPVSHG-VPG---------ESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTL 153 (261)
Q Consensus 84 ~~Sn~~~~~~~ll~~~~ip~~~i~~~~~~-~~~---------~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~ 153 (261)
++||+++|+++||+ +||++|+|++++. .++ +++|++|++.|+++++.....+ .....|+|||+||||
T Consensus 84 ~~Sn~~~~~~~ll~--~i~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~Ye~~i~~~~~~~~~~g-~~~~~p~~Dl~lLGm 160 (266)
T 3eb9_A 84 TDSNYNMAREVLLH--DIPDDLVFPFDTSAVTPSAEATSADAMRVAEAYGKQLASLLPLKSVGE-AGPKVPVFDVVLLGL 160 (266)
T ss_dssp TTCHHHHHHHHTGG--GSCGGGEECCCCTTCCTTSCCCHHHHHHHHHHHHHHHHHHSCEEETTT-TSCEEECCSEEEECC
T ss_pred hHHHHHHHHHHhhc--CCCHHHEEeCCCccCChhhccccCcHHHHHHHHHHHHHHhcccccccc-ccccCCCCCEEEEcc
Confidence 99999999999999 8899999999987 578 9999999999998653210000 000135799999999
Q ss_pred CCCCcccccCCCCCCCCCC--CceEEEec--C--CCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCccc
Q 024870 154 GTRCDVASIYPNNPVLQED--SQWVAWVS--S--NAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRL 227 (261)
Q Consensus 154 G~DGH~aslfP~~~~l~~~--~~~~~~~~--~--~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~ 227 (261)
|+||||||||||++.+.+. ++++.... + ++|++|||||+++|++||+|+|+++|++|+++|+++++++++ ..+
T Consensus 161 G~DGH~as~fPg~~~l~~~~~~~~v~~~~~~~~~~~P~~rITlt~~~I~~A~~i~ll~~G~~Ka~av~~~l~g~~~-~~~ 239 (266)
T 3eb9_A 161 GSDGHTASIFPGSQAEKETDGKVVVSVGFPSETMKPKVWRVTLSPATIMQARNVIVLATGAEKKWVVDGILADTAH-KAP 239 (266)
T ss_dssp CTTSCBTTBCTTCSGGGCCSSSCSEEEECCCTTCSSCSCEEEECHHHHHTCSEEEEEECCGGGHHHHHHHHCSSCS-SCC
T ss_pred CCCCCeeecCCCCcccccCCCccEEEecCCCcccCCCCeEEEcCHHHHHhcCeEEEEEeCHHHHHHHHHHHhCCCC-ccc
Confidence 9999999999999987776 67776543 5 789999999999999999999999999999999999999875 679
Q ss_pred ccccccccCCeEEEEecHHHHhcccc
Q 024870 228 PAQLVSPKDGKLVWFADASAASFFLR 253 (261)
Q Consensus 228 Pas~l~~~~~~v~~~~D~~Aa~~l~~ 253 (261)
|||+++..|++++||+|++||++|.+
T Consensus 240 pAs~l~~~h~~~~~~~D~~Aa~~L~~ 265 (266)
T 3eb9_A 240 VARFLRGCEGNVSFLLDKEIAENLAK 265 (266)
T ss_dssp GGGGGGGCSSEEEEEEEHHHHC----
T ss_pred hhHHhcCCCCCEEEEEcHHHhccccc
Confidence 99999955999999999999999864
No 5
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME DI non-hodgkin lymphomas, neuroborreliosis; 2.20A {Borrelia burgdorferi}
Probab=100.00 E-value=7.5e-65 Score=454.48 Aligned_cols=235 Identities=17% Similarity=0.202 Sum_probs=213.3
Q ss_pred CCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHh-cCcEEEEEcCCCcHHHHHHhhCCCC-CCCCCCCcEEEEEecccc-c
Q 024870 3 RREPELRLFDSCEELDSCLADYVYQISEAAIRE-RGSFSLVLSGGDMPNRLGKLTRPPF-LRTVDWSKWHVFWAEENV-V 79 (261)
Q Consensus 3 ~~~~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~-~~~~~l~lsGG~tp~~l~~~L~~~~-~~~i~w~~v~~f~~DEr~-v 79 (261)
..+|++++|+|.+++++++|++|++.+++++.+ ++.++|+||||+||..+|+.|++.+ ...+||+||++||+|||| |
T Consensus 19 ~~~M~i~i~~~~~~la~~aA~~i~~~i~~a~~~~~~~~~l~LsgGsTP~~~y~~L~~~~~~~~idw~~v~~f~~DEr~gv 98 (289)
T 3hn6_A 19 PGSMRLIIRPTYEDISKWAANHVAQKINEFSPTKENPFILGLPTGSSPIGMYKNLIELNKNKKISFQNVITFNMDEYIGI 98 (289)
T ss_dssp CCSCEEEEESSHHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCSSTTHHHHHHHHHHHHTTSCCCTTEEEEESEEESSC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHHHHHHhhccCCcEEEEECCCccHHHHHHHHHHhHhhcCCCchheEEEeCcceecC
Confidence 456999999999999999999999999888765 4579999999999999999998643 357999999999999999 9
Q ss_pred CCCCchhHHHHHHHHhcCCCCCCCCcEEcCCCC-CCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCc
Q 024870 80 PKRHPDSFYRQAQEAFISKVPILPAHVIPVSHG-VPGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCD 158 (261)
Q Consensus 80 p~~~~~Sn~~~~~~~ll~~~~ip~~~i~~~~~~-~~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH 158 (261)
|++|++||+++|+++||++++||++|+|++++. .+++++|++|++.|++ .++|||+|||||+|||
T Consensus 99 p~~~~~Sn~~~~~~~Ll~~v~i~~~~i~~~~~~~~d~~~~a~~Ye~~i~~--------------~~~~Dl~lLGmG~DGH 164 (289)
T 3hn6_A 99 EENHPESYHSFMWNNFFSHIDIKKENINILNGNASNLKKECEEYEKKIKS--------------FGGIMLFVGGIGPDGH 164 (289)
T ss_dssp CTTSTTSHHHHHHHHTGGGSCCCGGGEECCCTTCSSHHHHHHHHHHHHHH--------------TTSCSEEEEECCTTSC
T ss_pred CCCcHHHHHHHHHHHhhccCCCCHHHeecCCCCCCCHHHHHHHHHHHHhh--------------cCCCCEEEEccCCCCc
Confidence 999999999999999999999999999999985 6999999999999996 6789999999999999
Q ss_pred ccccCCCCCCCCCCCceEEEe-------------c-CCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCC
Q 024870 159 VASIYPNNPVLQEDSQWVAWV-------------S-SNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPN 224 (261)
Q Consensus 159 ~aslfP~~~~l~~~~~~~~~~-------------~-~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~ 224 (261)
|||||||++ +.+.++++... + +++|++|||||++.|++||+|+|+++|++|+++|+++++++++
T Consensus 165 ~asnfPg~~-l~~~t~~v~l~~~t~~~n~~~f~~~~~~~P~~rITl~l~~I~~Ar~i~lla~G~~Ka~av~~~l~g~~~- 242 (289)
T 3hn6_A 165 IAFNEPGSS-LTSRTRIKTLTQDTIIANSRFFEGDVNKVPKNALTVGIGTIMDSQEVLIIVNGHNKARALKHAIEKGVN- 242 (289)
T ss_dssp BTTBCTTCC-TTCCSEEEECCHHHHHHHGGGTTTCTTTSCSEEEECCHHHHHTSSCEEEEECSGGGHHHHHHHHTSCCC-
T ss_pred eeecCCCCc-ccccceEEeccHHHHHHhhhhccCCCCCCCCeEEECCHHHHHccCeEEEEEcChHHHHHHHHHHhCCCC-
Confidence 999999986 45555555421 2 7889999999999999999999999999999999999999875
Q ss_pred cccccccccccCCeEEEEecHHHHhccccC
Q 024870 225 RRLPAQLVSPKDGKLVWFADASAASFFLRG 254 (261)
Q Consensus 225 ~~~Pas~l~~~~~~v~~~~D~~Aa~~l~~~ 254 (261)
..+|+|+++ .|++++||+|++||++|..+
T Consensus 243 ~~~Pas~l~-~h~~~~~~lD~~Aa~~L~~~ 271 (289)
T 3hn6_A 243 HMWTISALQ-LHKNAIIVSDKNATYELKVG 271 (289)
T ss_dssp TTSGGGGGG-GCSSEEEEEESGGGTTSBHH
T ss_pred cccChHHHc-cCCCEEEEEcHHHHccccHh
Confidence 689999999 59999999999999998654
No 6
>3css_A 6-phosphogluconolactonase; structural genomics, medical structural genomics of pathogen protozoa consortium, SGPP, leish hydrolase; 1.70A {Leishmania braziliensis} PDB: 3ch7_A
Probab=100.00 E-value=2.7e-64 Score=446.94 Aligned_cols=248 Identities=21% Similarity=0.319 Sum_probs=215.6
Q ss_pred CCCCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccC
Q 024870 1 MERREPELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVP 80 (261)
Q Consensus 1 ~~~~~~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp 80 (261)
|+.+.|++++|+|.+++++++|++|.+.+++++++++.++|+||||+||..+|+.|++.....++|+||++||+||||||
T Consensus 1 m~~~~~~~~~~~~~~~l~~~aA~~i~~~i~~a~~~~~~~~l~LsgGstp~~ly~~L~~~~~~~i~w~~v~~f~~DEr~vp 80 (267)
T 3css_A 1 MTSFAPTVKICENLSQMSFAAREVILAAIDARVDKSVPVVLALSGGSTPKRLYEELHEKDLALLQQHAVQFILGDERLLS 80 (267)
T ss_dssp ---CCCEEEECSSHHHHHHHHHHHHHHHHHTCSSTTSCEEEEECCSSTTHHHHHHHHHHSHHHHHTTCEEEEESEEESSC
T ss_pred CCCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHHHHHhcccCCChhHeEEEeeeeeccC
Confidence 88899999999999999999999999999999999999999999999999999999753223599999999999999999
Q ss_pred CCCchhHHHHHHHHhcCCCCCCCCcEEcCCCCC------------CHH-HHHHHHHHHHHHhhhccCCCCCCCCCCCccc
Q 024870 81 KRHPDSFYRQAQEAFISKVPILPAHVIPVSHGV------------PGE-SAANNYEFSIRQQVRKRTVPVSPSSDCPQFD 147 (261)
Q Consensus 81 ~~~~~Sn~~~~~~~ll~~~~ip~~~i~~~~~~~------------~~~-~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~D 147 (261)
++|++||+++++++||++++ ++|+|++++.. +++ ++|++|++.|++.++.+... ...++.|+||
T Consensus 81 ~~~~~Sn~~~~~~~ll~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~e~~~a~~Ye~~l~~~~~~~~~~-~~~~~~p~~D 157 (267)
T 3css_A 81 EDDEQSNFSMATKALLRDVP--SSDVISIDRRAALATSKDEKGGLDGAWAVAQDYEVKLLNCLPCKQIN-GTAKSVPVVD 157 (267)
T ss_dssp TTSTTSHHHHHHHHTGGGSC--GGGBCCCCCHHHHTTTTCTTTTHHHHHHHHHHHHHHHHHHSCEEECT-TSSCEEECCS
T ss_pred CCCHHHHHHHHHHHHhccCC--HHHEEeCCCchhccccccccccCChhHHHHHHHHHHHHHhcCccccc-cccCCCCCCC
Confidence 99999999999999999998 67999998754 788 99999999999864310000 0000245799
Q ss_pred EEEecCCCCCcccccCCCCCCCCCCCceEE-Ee--c-CCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCC
Q 024870 148 LVLLTLGTRCDVASIYPNNPVLQEDSQWVA-WV--S-SNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKP 223 (261)
Q Consensus 148 l~lLG~G~DGH~aslfP~~~~l~~~~~~~~-~~--~-~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~ 223 (261)
++|||||+|||||||||+++.+.++++++. .+ + +++|++|||||++.|++||+|+|+++|++|+++|+++++++++
T Consensus 158 l~lLGiG~dGH~aslfP~~~~L~~~~~~v~~~~~~~~~~~p~~rITltl~~I~~A~~v~~la~G~~Ka~av~~~l~g~~~ 237 (267)
T 3css_A 158 IVLLGFGSDGHTASIFPDSVAATDEEHVVSVSFPSPTMSPKVWRVTLSKTVIQYAKHVVVLAAGKDKNWVVRGVLSESPT 237 (267)
T ss_dssp EEEEECCTTSCBTTBCTTSGGGGCCSCSEEEECCCTTCSSCSCEEEECHHHHHHCSEEEEEECSGGGHHHHHHHHCSSCC
T ss_pred EEEECCCCCccceeCCCCCcccCCCCcEEEeecccCCCCCCCceEECCHHHHHcCCEEEEEEeCHHHHHHHHHHHcCCCC
Confidence 999999999999999999988887778776 55 3 7888999999999999999999999999999999999999874
Q ss_pred Cccccccccc-ccCCeEEEEecHHHHhccc
Q 024870 224 NRRLPAQLVS-PKDGKLVWFADASAASFFL 252 (261)
Q Consensus 224 ~~~~Pas~l~-~~~~~v~~~~D~~Aa~~l~ 252 (261)
..+|||+++ ..|++++||+|++||++|.
T Consensus 238 -~~~Pas~l~~~~h~~~~~~~D~~Aa~~l~ 266 (267)
T 3css_A 238 -DPLPVSRFLRDCRGSVTLLLDPGAGEGVC 266 (267)
T ss_dssp -SSCCGGGGGGGCSSEEEEEECTTTTTTTC
T ss_pred -CcCCHHHhccCCCCCEEEEECHHHHhhcc
Confidence 679999999 6689999999999999874
No 7
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=100.00 E-value=1.5e-63 Score=431.85 Aligned_cols=218 Identities=22% Similarity=0.296 Sum_probs=196.7
Q ss_pred CCeEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCc
Q 024870 5 EPELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHP 84 (261)
Q Consensus 5 ~~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~ 84 (261)
+|+ ++|+|.+++++.+|++|++.+++++++++.++|+||||+||+.+|+.|++. .+||+||++||+||||||++|+
T Consensus 2 mm~-~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~LsgGstp~~~y~~L~~~---~idw~~v~~f~~DEr~vp~~~~ 77 (226)
T 3lwd_A 2 MMN-TTQEGRQRLAERLADTVAQALEADLAKRERALLVVSGGSTPKPFFTSLAAK---ALPWARVDVTLADERWVTADDA 77 (226)
T ss_dssp --C-HHHHHHHHHHHHHHHHHHHHHHHHHTTSSCEEEEECCSSTTHHHHHHHHTS---CSCGGGEEEEESEEESSCTTST
T ss_pred CCc-eecCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHHHhc---CCCchhEEEEEeeecccCCCCh
Confidence 478 899999999999999999999999999999999999999999999999874 8999999999999999999999
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEcCCCC-CCHHHHHHHHHHHHHHhhhccCCCCCCCCCCC-cccEEEecCCCCCccccc
Q 024870 85 DSFYRQAQEAFISKVPILPAHVIPVSHG-VPGESAANNYEFSIRQQVRKRTVPVSPSSDCP-QFDLVLLTLGTRCDVASI 162 (261)
Q Consensus 85 ~Sn~~~~~~~ll~~~~ip~~~i~~~~~~-~~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~-~~Dl~lLG~G~DGH~asl 162 (261)
+||+++|+++||++ .++++|+|++++. .+++++|++|++.|++ .| +||++|||||+|||||||
T Consensus 78 ~Sn~~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~~~ye~~i~~--------------~~~~~Dl~lLG~G~dGH~as~ 142 (226)
T 3lwd_A 78 DSNARLVRETLLVG-PAAEACFHPLTTDDDTPEAGVETVAERLES--------------LPWPASAVILGMGGDGHTASL 142 (226)
T ss_dssp TCHHHHHHHHTSSG-GGGGSEEECSCCSSSSHHHHHHHHHHHHHT--------------SCSSBSEEEECCCTTSCBTTB
T ss_pred HHHHHHHHHHhcCC-CCcHHhEecCCCCcCCHHHHHHHHHHHHHh--------------cCCCCCEEEECcCCCCCeeec
Confidence 99999999999999 7899999998765 6999999999999985 55 899999999999999999
Q ss_pred CCCCCCCCC---CCceEEEec-CCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCcccccccccccCCe
Q 024870 163 YPNNPVLQE---DSQWVAWVS-SNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRLPAQLVSPKDGK 238 (261)
Q Consensus 163 fP~~~~l~~---~~~~~~~~~-~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~Pas~l~~~~~~ 238 (261)
|||++.+.+ ...++..++ +++|++|||||+++|++||+|+|+++|++|+++|+++++++++ .++|||+++....+
T Consensus 143 fPg~~~L~~~~~~~~~~~~~~~~~~P~~riTlt~~~I~~A~~i~ll~~G~~Ka~av~~~l~g~~~-~~~Pas~l~~h~~~ 221 (226)
T 3lwd_A 143 FPDSEQLATALETTSAAVVVHAPSVPQARITLSASRLADAGLHVLHITGNDKRRVLAEALAGDDV-RQLPIRAFLSQPIA 221 (226)
T ss_dssp CTTCTTHHHHHHCCSSEEEECCTTSSSCEEEECHHHHTCBSCEEEEEESHHHHHHHHHHHHCCCT-TTSTTHHHHTSCCE
T ss_pred CCCChhhhhhhccCCeEEecCCCCCCCcEEEcCHHHHHhhCeEEEEEECHHHHHHHHHHHcCCCC-CcCChHHHhcCCCe
Confidence 999987753 334454444 7899999999999999999999999999999999999999874 78999999943346
Q ss_pred EEEE
Q 024870 239 LVWF 242 (261)
Q Consensus 239 v~~~ 242 (261)
|+|.
T Consensus 222 v~w~ 225 (226)
T 3lwd_A 222 TYWA 225 (226)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 7773
No 8
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=100.00 E-value=4.6e-62 Score=424.34 Aligned_cols=216 Identities=23% Similarity=0.370 Sum_probs=193.7
Q ss_pred CCeEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCc
Q 024870 5 EPELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHP 84 (261)
Q Consensus 5 ~~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~ 84 (261)
+|++++|+|.+++++++|++|++.+++++++++.++|+||||+||+.+|+.|++. .+||+||++||+||||||++|+
T Consensus 2 mm~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsgGstp~~~y~~L~~~---~i~w~~v~~f~~DEr~vp~~~~ 78 (232)
T 3lhi_A 2 MFVWHEYENAAEAAQSLADAVADALQGALDEKGGAVLAVSGGRSPIAFFNALSQK---DLDWKNVGITLADERIVPTNHA 78 (232)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEEECCSSTTHHHHHHHHTS---CCCGGGEEEEESEEESSCTTST
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHHHHhc---CCCchheEEEEeeeccCCCCCh
Confidence 4899999999999999999999999999999999999999999999999999874 7999999999999999999999
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEcCC-CCCCHH--HHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCcccc
Q 024870 85 DSFYRQAQEAFISKVPILPAHVIPVS-HGVPGE--SAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVAS 161 (261)
Q Consensus 85 ~Sn~~~~~~~ll~~~~ip~~~i~~~~-~~~~~~--~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~as 161 (261)
+||+++|+++||+++++ +++++++. ...+++ ++|++|++.|++ .|+||++|||||+||||||
T Consensus 79 ~Sn~~~~~~~ll~~~~~-~~~~~p~~~~~~~~~~~~~~~~ye~~i~~--------------~~~~Dl~lLG~G~dGH~as 143 (232)
T 3lhi_A 79 DSNTGLVREYLLKNKAA-AAVWIPMVEDGKTETELHPDAVVDYALKH--------------YKQPDVLILGMGNDGHTAS 143 (232)
T ss_dssp TCHHHHHHHHTSSGGGG-GSEECCSSCTTCCGGGCCHHHHHHHHHHH--------------CCCCSEEEECCCTTSCBTT
T ss_pred HHHHHHHHHHhccCCCc-cceEecCCCCCCChhhHHHHHHHHHHHhh--------------CCCCCEEEEccCCCCCeee
Confidence 99999999999999874 56667664 446888 999999999986 7889999999999999999
Q ss_pred cCCCCCCCCC-----CCceEEEec-CCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCccccccccccc
Q 024870 162 IYPNNPVLQE-----DSQWVAWVS-SNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRLPAQLVSPK 235 (261)
Q Consensus 162 lfP~~~~l~~-----~~~~~~~~~-~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~Pas~l~~~ 235 (261)
||||++.+.+ +...+...+ +++|++|||||+++|++||+|+|+++|++|+++|++++++ ++ .++|||+|+ .
T Consensus 144 ~fPg~~~l~~~~~~~~~~~~~~~~~~~~P~~riTlt~~~I~~A~~i~ll~~G~~Ka~av~~~l~g-~~-~~~Pas~l~-~ 220 (232)
T 3lhi_A 144 IFPKAPQFQTAIDGSAGVALVHTTPVTAPHERISMTLDAIAHTGHVFLAIQGEEKKAVFDQAAQG-EN-REYPISLVL-N 220 (232)
T ss_dssp BCTTCTTHHHHHCCTTCCCEEEECCSSSSSCEEEECHHHHHTCSEEEEEEESHHHHHHHHHHHTS-CC-TTSTHHHHH-T
T ss_pred cCCCChhhhhhhccccCcEEEeCCCCCCCCceEEecHHHHHhcCeEEEEEECHHHHHHHHHHHhC-CC-ccCcHHHHH-h
Confidence 9999987643 222444444 7889999999999999999999999999999999999998 53 689999999 5
Q ss_pred CC----eEEE
Q 024870 236 DG----KLVW 241 (261)
Q Consensus 236 ~~----~v~~ 241 (261)
|+ +|+|
T Consensus 221 h~~~~~~v~w 230 (232)
T 3lhi_A 221 HQGVNCHVFY 230 (232)
T ss_dssp STTCCEEEEE
T ss_pred CCCCCcEEEe
Confidence 76 4666
No 9
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=100.00 E-value=3.6e-62 Score=425.07 Aligned_cols=217 Identities=23% Similarity=0.329 Sum_probs=195.8
Q ss_pred CCeEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCc
Q 024870 5 EPELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHP 84 (261)
Q Consensus 5 ~~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~ 84 (261)
+|++++|+|.+++++++|++|++.+++++++++.++|+||||+||+.+|+.|++. .+||+||++||+||||||++|+
T Consensus 5 ~m~~~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsgGstp~~~y~~L~~~---~idw~~v~~f~~DEr~vp~~~~ 81 (233)
T 3nwp_A 5 ETVFKSFDTPSALEQQLASKIASQLQEAVDARGKASLVVSGGSTPLKLFQLLSMK---SIDWSDVYITLADERWVEADAD 81 (233)
T ss_dssp CCCEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEEECCSSTTHHHHHHHHHC---CSCGGGEEEEESEEESSCTTST
T ss_pred eeEEEEECCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHHHhc---CCChhHeEEEeCeecccCCCCh
Confidence 5999999999999999999999999999999999999999999999999999864 7999999999999999999999
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEcCCC-CCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCC-cccEEEecCCCCCccccc
Q 024870 85 DSFYRQAQEAFISKVPILPAHVIPVSH-GVPGESAANNYEFSIRQQVRKRTVPVSPSSDCP-QFDLVLLTLGTRCDVASI 162 (261)
Q Consensus 85 ~Sn~~~~~~~ll~~~~ip~~~i~~~~~-~~~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~-~~Dl~lLG~G~DGH~asl 162 (261)
+||+++|+++||+++++ +++++++++ ..+++++|++|++.|++ .| +||++|||||+|||||||
T Consensus 82 ~Sn~~~~~~~ll~~~~~-~~~~~~~~~~~~~~~~~~~~ye~~i~~--------------~~~~~Dl~lLG~G~dGHias~ 146 (233)
T 3nwp_A 82 ASNERLVREHLLQNRAS-NAKFRGLKNMFSTAEAGADMAAESLSN--------------FPRPFDVVVLGMGNDGHTCSW 146 (233)
T ss_dssp TCHHHHHHHHTSSGGGG-GSEECCSCCSSSSHHHHHHHHHHHTTT--------------SCSSBSEEEECCCTTSCBTTB
T ss_pred HHHHHHHHHHhhccCCc-cceEEcCCCCCCCHHHHHHHHHHHHHh--------------cCCCCCEEEEccCCCCCeeec
Confidence 99999999999999974 578888755 46999999999999974 66 899999999999999999
Q ss_pred CCCCCCCCCC---CceEEEec-CCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCcccccccccccCC-
Q 024870 163 YPNNPVLQED---SQWVAWVS-SNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRLPAQLVSPKDG- 237 (261)
Q Consensus 163 fP~~~~l~~~---~~~~~~~~-~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~Pas~l~~~~~- 237 (261)
|||++.+.+. ..++..++ +++|++|||||+++|++||+|+|+++|++|+++|+++++++++ .++|||+++ .|+
T Consensus 147 fPg~~~L~~~~~~~~~~~~~~~~~~P~~riTlt~~~I~~A~~i~ll~~G~~Ka~av~~~l~g~~~-~~~Pas~l~-~h~~ 224 (233)
T 3nwp_A 147 FPCSAELENALTTQALCVATNPTTAPHGRITLSKSAILNSRQIYLHLVGEQKLSVYRQALESDDV-HAMPIRAVL-AQRK 224 (233)
T ss_dssp CTTCTTHHHHHHCCSSEEEECCSSSSSCEEEECHHHHHSBSCEEEEEESHHHHHHHHHHHTCCCT-TTCTTHHHH-SCSS
T ss_pred CCCCchhhhhcccCceEEECCCCCCCCceEECCHHHHHhhCeEEEEEECHHHHHHHHHHHhCCCC-CCccHHHHH-hCCC
Confidence 9999865431 22455444 7899999999999999999999999999999999999998774 789999999 464
Q ss_pred ---eEEE
Q 024870 238 ---KLVW 241 (261)
Q Consensus 238 ---~v~~ 241 (261)
+|+|
T Consensus 225 ~~~~v~w 231 (233)
T 3nwp_A 225 TPVDVFW 231 (233)
T ss_dssp SCEEEEE
T ss_pred CCcEEEe
Confidence 4666
No 10
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=100.00 E-value=2.2e-61 Score=421.52 Aligned_cols=232 Identities=21% Similarity=0.367 Sum_probs=206.5
Q ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCC-CCCCCCCcEEEEEecccccCCCCc
Q 024870 6 PELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPF-LRTVDWSKWHVFWAEENVVPKRHP 84 (261)
Q Consensus 6 ~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~-~~~i~w~~v~~f~~DEr~vp~~~~ 84 (261)
|++++|+|.+++++++|++|.+.++ +++.++|+||||+||..+|+.|++.. .+.+||++|++||+|||+||++|+
T Consensus 2 m~~~~~~~~~~l~~~aA~~i~~~i~----~~~~~~l~lsgGstp~~~~~~L~~~~~~~~~~w~~v~~f~~DEr~vp~~~~ 77 (238)
T 1y89_A 2 INHKIFPTADAVVKSLADDMLAYSQ----QGQPVHISLSGGSTPKMLFKLLASQPYANDIQWKNLHFWWGDERCVAPDDA 77 (238)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHT----TSSCEEEEECCSHHHHHHHHHHTSTTHHHHSCGGGEEEEESEEESSCTTST
T ss_pred ceEEEeCCHHHHHHHHHHHHHHHHH----hCCCEEEEECCCccHHHHHHHHHhhhhccCCChhHeEEEeceecCCCCCCH
Confidence 7999999999999999999996554 48899999999999999999998753 334999999999999999999999
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEcCCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCcccccCC
Q 024870 85 DSFYRQAQEAFISKVPILPAHVIPVSHGVPGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVASIYP 164 (261)
Q Consensus 85 ~Sn~~~~~~~ll~~~~ip~~~i~~~~~~~~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~aslfP 164 (261)
+||+++++++|+++++++++|+|++++..+++++|++|++.|++.++... +.|+||++|||||+|||||||||
T Consensus 78 ~Sn~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~y~~~l~~~~~~~~-------~~~~~Dl~lLGiG~dGH~aslfP 150 (238)
T 1y89_A 78 ESNYGEANALLFSKINMPAQNIHRILGENEPQAEAERFAQAMAHVIPTEN-------GTPVFDWILLGVGADGHTASLFP 150 (238)
T ss_dssp TCHHHHHHHHTGGGSCCCGGGBCCCCTTSCHHHHHHHHHHHHHHHSCEET-------TEECCSEEEECCCTTSCBTTBCT
T ss_pred HHHHHHHHHHhhccCCCCHHHEEeCCCCCCHHHHHHHHHHHHHHhhcccC-------CCCCCCEEEECCCCCCceeecCC
Confidence 99999999999999999999999999878999999999999998654210 13579999999999999999999
Q ss_pred CCCCCCCCCceEEEe-c-CCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCC-CCCcccccccccccCCeEEE
Q 024870 165 NNPVLQEDSQWVAWV-S-SNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQ-KPNRRLPAQLVSPKDGKLVW 241 (261)
Q Consensus 165 ~~~~l~~~~~~~~~~-~-~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~-~~~~~~Pas~l~~~~~~v~~ 241 (261)
++ +.++++++..+ + +++|.+|||||++.|++||+|+|+++|++|+++++++++++ + +..+|||+++..|++++|
T Consensus 151 ~~--l~~~~~~v~~~~~~~~~p~~rITltl~~i~~a~~vi~~a~G~~Ka~ai~~~l~~~~~-~~~~Pas~l~~~~~~~~~ 227 (238)
T 1y89_A 151 GQ--TDYADANLSVVASHPESGQLRVSKTAKVLQAAKRISYLVLGAGKAEIVEQIHTTPAE-QLPYPAAKIHSTSGVTEW 227 (238)
T ss_dssp TT--CCTTCCSSEEEEECTTTCCEEEEECHHHHHHSSEEEEEECSGGGHHHHHHHHHSCGG-GCCCHHHHCCCSSSEEEE
T ss_pred CC--CCCCCcEEEeccCCCCCCCCeEECCHHHHHhCCEEEEEEeCHHHHHHHHHHHhCCCC-CccCCHHHHhcCCCCEEE
Confidence 98 66666665544 2 67889999999999999999999999999999999999985 5 367999999954899999
Q ss_pred EecHHHHhcc
Q 024870 242 FADASAASFF 251 (261)
Q Consensus 242 ~~D~~Aa~~l 251 (261)
|+|++||++|
T Consensus 228 ~~D~~Aa~~l 237 (238)
T 1y89_A 228 YLDSDAAAKI 237 (238)
T ss_dssp EEEHHHHTTT
T ss_pred EEChHHHhhc
Confidence 9999999876
No 11
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase, malaria, carbohydrate metabolism, glucose metabolism, NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium vivax}
Probab=100.00 E-value=2.4e-61 Score=434.13 Aligned_cols=233 Identities=17% Similarity=0.191 Sum_probs=204.9
Q ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHHHH--HHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCC
Q 024870 4 REPELRLFDSCEELDSCLADYVYQISEA--AIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPK 81 (261)
Q Consensus 4 ~~~~i~i~~~~~~l~~~~A~~i~~~i~~--~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~ 81 (261)
.+|+|++++|++++++++|++|++.|++ ++++++.|+|+||||+||..+|+.|+......+||+||++||+|||+||+
T Consensus 25 ~~Mkiii~~d~~~ls~~aA~~i~~~I~~~~~~~~~~~~~l~LsgGsTP~~ly~~L~~~~~~~idw~~V~~f~~DEr~vp~ 104 (312)
T 3e15_A 25 HNVKYLEAKDLTDFNQKSAYYICHQIAEKQLSKEGGHVVIGLSGGKTPIDVYKNIALVKDIKIDTSKLIFFIIDERYKRD 104 (312)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEECCSHHHHHHHHHHTTCCSSCCCGGGCEEEESEEECCTT
T ss_pred CCeeEEEeCCHHHHHHHHHHHHHHHHHhhhhhhhCCCEEEEEeCCCCHHHHHHHHHHhhccCCCccceEEEEeeeecCCC
Confidence 3599999999999999999999999876 57889999999999999999999998644568999999999999999999
Q ss_pred CCchhHHHHHHHHhcCCCCCCC-CcEEcCCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCccc
Q 024870 82 RHPDSFYRQAQEAFISKVPILP-AHVIPVSHGVPGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVA 160 (261)
Q Consensus 82 ~~~~Sn~~~~~~~ll~~~~ip~-~~i~~~~~~~~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~a 160 (261)
+|++||+++++ .||++++||+ +|+|.+++..+++++|++|++.|++.+.. .|+|||+|||||+|||||
T Consensus 105 d~~~Sn~~~~~-~l~~~v~i~~~~~i~~~~g~~d~~~~a~~Ye~~I~~~~~~----------~g~~DL~LLGiG~DGHia 173 (312)
T 3e15_A 105 DHKFSNYNNIK-FLFESLKINEKEQLYRPDTSKNIVECVRDYNEKIKNMVKK----------YTKVDIAILGMGSDFHIA 173 (312)
T ss_dssp CCTTCHHHHHH-HHHHHTTCCHHHHEECCCTTSCHHHHHHHHHHHHHHHHHH----------HCSCCEEEECCCTTSCBT
T ss_pred CChHHHHHHHH-HHHhcCCCCccccEEcCCCCcCHHHHHHHHHHHHHHHHhh----------cCCCcEEEEccCCCCcee
Confidence 99999999996 8999999997 79999999889999999999999876543 578999999999999999
Q ss_pred ccCCCCCC------------CCCCC---------------------ceEEEecCCCCCCeeEcCHHHHHhcCceEEEEcC
Q 024870 161 SIYPNNPV------------LQEDS---------------------QWVAWVSSNAPRESVTLTLPVINAAANVAIVASG 207 (261)
Q Consensus 161 slfP~~~~------------l~~~~---------------------~~~~~~~~~~p~~riTlt~~~I~~A~~i~ll~~G 207 (261)
|||||+++ +.+.+ .++....+.+|++|||||+++|++||+|+|+++|
T Consensus 174 slfPg~~~~~~~~~~~~t~~l~e~t~~~~~~~~s~~~~~~~~~~~~~~f~~~~~~pP~~rITlt~~~I~~Ak~v~~lv~G 253 (312)
T 3e15_A 174 SLFPNIFFNIYMNNYQNSYIYDESSIKVANSNDTSDNDNLDLLKEYVYFTTTNNFDVRKRITVSLDLLGNASSKIFLLNS 253 (312)
T ss_dssp TBCSSHHHHHHHHHTGGGSSSCGGGCCCCC---CCHHHHHTTCCCSEEEEECCSTTCSEEEEECHHHHHTCSEEEEEECS
T ss_pred ecCCCCcccccccccccceeecHHHHHHhhcccccccccccccccceeeccCCCCCCCeEEEecHHHHhcCCeEEEEEcC
Confidence 99999852 22221 1222222677899999999999999999999999
Q ss_pred CCcHHHHHHHhc-CCCCC--cccccccccccCCeEEEEecHHHH
Q 024870 208 IDVARPFLHVMM-DQKPN--RRLPAQLVSPKDGKLVWFADASAA 248 (261)
Q Consensus 208 ~~Ka~~v~~~l~-~~~~~--~~~Pas~l~~~~~~v~~~~D~~Aa 248 (261)
++|+++|+++|+ +++++ ..+|||+|| .|+++++++|..+.
T Consensus 254 ~~Ka~av~~~l~~g~vt~~~~~~PAS~Lq-~Hp~~~vv~~~~~~ 296 (312)
T 3e15_A 254 TDKLDLWKNMLLKSYVDVNYCLYPAVYLI-DSMNTTVVTCGYTN 296 (312)
T ss_dssp HHHHHHHHHHHHHTTTTCCTTTCHHHHHH-HTSCEEEEEESCTT
T ss_pred hHHHHHHHHHHHhCCCCCCcCccchHHHh-hCCCEEEEEcCCcc
Confidence 999999999999 87651 289999999 79999999998764
No 12
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A
Probab=100.00 E-value=3.9e-61 Score=418.37 Aligned_cols=217 Identities=24% Similarity=0.381 Sum_probs=201.1
Q ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCch
Q 024870 6 PELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPD 85 (261)
Q Consensus 6 ~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~~ 85 (261)
-++++|+|.+++++++|++|++.+++++++++.++|+||||+||..+|+.|++. .+||++|++||+||||||++|++
T Consensus 14 ~~~~~~~~~~~l~~~aA~~i~~~i~~~~~~~~~~~l~LsgGsTp~~ly~~L~~~---~i~w~~v~~f~~DEr~vp~~~~~ 90 (232)
T 1vl1_A 14 EKTVIYLLEDGYVDFVVEKIRTKMEKLLEEKDKIFVVLAGGRTPLPVYEKLAEQ---KFPWNRIHFFLSDERYVPLDSDQ 90 (232)
T ss_dssp -CEEEEEESSCHHHHHHHHHHHHHHHHHHHCSCEEEEECCSTTHHHHHHHHTTS---CCCGGGEEEEESEEESSCTTSTT
T ss_pred eeEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCCccHHHHHHHHHHc---CCChhHEEEEeCeEeecCCCChH
Confidence 478999999999999999999999999999999999999999999999999975 69999999999999999999999
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEcCCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCcccccCC-
Q 024870 86 SFYRQAQEAFISKVPILPAHVIPVSHGVPGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVASIYP- 164 (261)
Q Consensus 86 Sn~~~~~~~ll~~~~ip~~~i~~~~~~~~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~aslfP- 164 (261)
||+++|+++||+++++|++|+|++++..+++++|++|++.|++ ..|+||++|||||+|||||||||
T Consensus 91 Sn~~~~~~~l~~~v~i~~~~i~~~~~~~~~e~~~~~y~~~i~~-------------~~~~~Dl~lLGiG~dGH~aslfP~ 157 (232)
T 1vl1_A 91 SNFRNINEVLFSRAKIPSGNVHYVDTSLPIEKACEKYEREIRS-------------ATDQFDLAILGMGPDGHVASIFDL 157 (232)
T ss_dssp CHHHHHHHHTTTTSCCCGGGEECCCTTSCHHHHHHHHHHHHHH-------------HCSSCSEEEECCCTTSCBTTBCSH
T ss_pred HHHHHHHHHHhccCCCCHHHEecCCCCCCHHHHHHHHHHHHHh-------------cCCCCCEEEEecCCCCchhhccCC
Confidence 9999999999999999999999999888999999999999985 15789999999999999999999
Q ss_pred CCCCCCCCCceEEEec-CCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCcccccccccccCCeEEEEe
Q 024870 165 NNPVLQEDSQWVAWVS-SNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRLPAQLVSPKDGKLVWFA 243 (261)
Q Consensus 165 ~~~~l~~~~~~~~~~~-~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~Pas~l~~~~~~v~~~~ 243 (261)
+++.+.++++++. + +++|.+|||||++.|++||+|+|+++|++|+++++++++++ .+|||+++ .|++++||+
T Consensus 158 g~~~l~~~~~~v~--~~~~~p~~rITltl~~I~~A~~iilla~G~~Ka~av~~~l~g~----~~Pas~l~-~h~~~~~~~ 230 (232)
T 1vl1_A 158 ETGNKDNLVTFTD--PSGDPKVPRVTLTFRALNTSLYVLFLIRGKEKINRLTEILKDT----PLPAYFVR-GKEKTVWFV 230 (232)
T ss_dssp HHHTCSSSEEECS--SBTTTTBCEEEECHHHHTTCSEEEEEEESHHHHHHHHHHHTTC----CCGGGGCC-CSSEEEEEE
T ss_pred CCcccccCCcEEe--cCCCCCCCEEECCHHHHHhCCEEEEEEcCHHHHHHHHHHHhCC----CCChHHhC-cCCCEEEEe
Confidence 9887666555443 3 78899999999999999999999999999999999999983 29999999 599999999
Q ss_pred cH
Q 024870 244 DA 245 (261)
Q Consensus 244 D~ 245 (261)
|+
T Consensus 231 D~ 232 (232)
T 1vl1_A 231 GK 232 (232)
T ss_dssp EC
T ss_pred CC
Confidence 95
No 13
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=100.00 E-value=1.3e-54 Score=388.74 Aligned_cols=230 Identities=16% Similarity=0.208 Sum_probs=204.2
Q ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHHHHHh-cCcEEEEEcCCCcHHHHHHhhCCCC-CCCCCCCcEEEEEecccc-cCCC
Q 024870 6 PELRLFDSCEELDSCLADYVYQISEAAIRE-RGSFSLVLSGGDMPNRLGKLTRPPF-LRTVDWSKWHVFWAEENV-VPKR 82 (261)
Q Consensus 6 ~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~-~~~~~l~lsGG~tp~~l~~~L~~~~-~~~i~w~~v~~f~~DEr~-vp~~ 82 (261)
|++++|+|.+++++++|++|.+.+++++.+ ++.++|+||||+||..+|+.|.+.+ ...++|++|++|++|||+ ||++
T Consensus 1 m~i~i~~~~~~la~~aA~~i~~~i~~~~~~~~~~~~lglsgGsTp~~~~~~L~~~~~~~~i~~~~v~v~~lDEr~gv~~~ 80 (289)
T 1ne7_A 1 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRD 80 (289)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCSHHHHHHHHHHHHHHHTTSCCCTTEEEEESEEETTSCTT
T ss_pred CeEEEECCHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEcCCccHHHHHHHHHhhhhccCCCchheEEEeCceeecCCCC
Confidence 789999999999999999999988875543 4569999999999999999998532 347999999999999999 9999
Q ss_pred CchhHHHHHHHHhcCCCCCCCCcEEcCCCC-CCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCcccc
Q 024870 83 HPDSFYRQAQEAFISKVPILPAHVIPVSHG-VPGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVAS 161 (261)
Q Consensus 83 ~~~Sn~~~~~~~ll~~~~ip~~~i~~~~~~-~~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~as 161 (261)
|++||+++++++|++++++++.|+|.+++. .+++++|.+|++.|++ .++||++|||||+||||||
T Consensus 81 ~~~Sn~~~~~~~l~~~~~~~~~~i~~p~~~~~~~e~~~~~ye~~i~~--------------~~~~Dl~lLGiG~dGH~as 146 (289)
T 1ne7_A 81 HPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDAFEEKIKA--------------AGGIELFVGGIGPDGHIAF 146 (289)
T ss_dssp STTSHHHHHHHHTGGGSCCCGGGEECCCTTCSSHHHHHHHHHHHHHH--------------TTSCSEEEECCCTTCCSTT
T ss_pred cHHHHHHHHHHHhhccCCCCHHHEecCCCCCCCHHHHHHHHHHHHHh--------------cCCCCEEEEccCCCCccee
Confidence 999999999999999999999999999864 5899999999999996 5689999999999999999
Q ss_pred cCCCCCCCCCCCceEEE-------------ec-CCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCccc
Q 024870 162 IYPNNPVLQEDSQWVAW-------------VS-SNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRL 227 (261)
Q Consensus 162 lfP~~~~l~~~~~~~~~-------------~~-~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~ 227 (261)
||||++. .+.++++.. .+ +.+|.+|||||++.|++|++|+|+++|++|++++++++.++.+ ..+
T Consensus 147 lfPg~~l-~~~~~~~~L~~~~~~~~~~~f~~~~~~vp~~~iTl~l~~l~~a~~vi~la~G~~Ka~ai~~al~g~~~-~~~ 224 (289)
T 1ne7_A 147 NEPGSSL-VSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVN-HMW 224 (289)
T ss_dssp CCTTCCT-TCCSEEEECCHHHHHHHGGGTTTCGGGSCSEEEECCHHHHHTSSCEEEEECSGGGHHHHHHHHTSCCC-TTS
T ss_pred cCCCCCC-ccccceEEcchhhhhhhhccccCCCCCCCCEEEECCHHHHhcCCEEEEEEcCHHHHHHHHHHHhCCCC-ccC
Confidence 9999875 333343321 12 5678899999999999999999999999999999999999875 589
Q ss_pred ccccccccCCeEEEEecHHHHhccc
Q 024870 228 PAQLVSPKDGKLVWFADASAASFFL 252 (261)
Q Consensus 228 Pas~l~~~~~~v~~~~D~~Aa~~l~ 252 (261)
|+++++ .|++++|++|++||+.|.
T Consensus 225 Pas~l~-~h~~~~li~D~~aA~~L~ 248 (289)
T 1ne7_A 225 TVSAFQ-QHPRTVFVCDEDATLELK 248 (289)
T ss_dssp GGGGGG-GCSSEEEEEEGGGGTTSB
T ss_pred chHHHc-cCCCEEEEEcHHHHhhcc
Confidence 999999 599999999999999884
No 14
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A*
Probab=100.00 E-value=1.3e-53 Score=372.58 Aligned_cols=225 Identities=15% Similarity=0.204 Sum_probs=199.1
Q ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCC-CCCCCCCcEEEEEecccc-cCCCC
Q 024870 6 PELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPF-LRTVDWSKWHVFWAEENV-VPKRH 83 (261)
Q Consensus 6 ~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~-~~~i~w~~v~~f~~DEr~-vp~~~ 83 (261)
|++++|+|.+++++++|++|.+.+ ++++.++|+|+||+||..+|+.|.+.+ ...++|++|+||++|||+ ||++|
T Consensus 1 m~~~~~~~~~~l~~~aA~~l~~~i----~~~~~~~i~lsgG~T~~~~~~~L~~~~~~~~~~~~~v~v~~lder~gv~~~~ 76 (242)
T 2bkx_A 1 MKVMECQTYEELSQIAARITADTI----KEKPDAVLGLATGGTPEGTYRQLIRLHQTENLSFQNITTVNLDEYAGLSSDD 76 (242)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHH----HHCTTCEEEECCSSTTHHHHHHHHHHHHHSCCCCTTCEEEESEEETTCCTTS
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHH----HHCCCeEEEECCCCCHHHHHHHHHHHhhccCCChhheEEEeCccccCCCCCc
Confidence 789999999999999999999655 458899999999999999999997422 236999999999999999 99999
Q ss_pred chhHHHHHHHHhcCCCCCCCCcEEcCCC-CCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCccccc
Q 024870 84 PDSFYRQAQEAFISKVPILPAHVIPVSH-GVPGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVASI 162 (261)
Q Consensus 84 ~~Sn~~~~~~~ll~~~~ip~~~i~~~~~-~~~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~asl 162 (261)
++||+++++++|+++++++..|+|.+++ ..+++++|..|++.|+. .++||++|||||+|||+|||
T Consensus 77 ~~sn~~~~~~~l~~~~~~~~~~i~~p~~~~~~~~~~~~~y~~~i~~--------------~~~~Dl~llGiG~dgh~a~l 142 (242)
T 2bkx_A 77 PNSYHFYMNDRFFQHIDSKPSRHFIPNGNADDLEAECRRYEQLVDS--------------LGDTDIQLLGIGRNGHIGFN 142 (242)
T ss_dssp TTSHHHHHHHHTGGGSCCCGGGEECCCTTCSCHHHHHHHHHHHHHH--------------TTSCSEEEECCCTTSCBTTB
T ss_pred hHHHHHHHHHHHhccCCCCHHHEEcCCCCCCCHHHHHHHHHHHHHh--------------cCCCCEEEECcCCCCcceeC
Confidence 9999999999999999999999999985 56899999999999986 56899999999999999999
Q ss_pred CCCCCCCCCCC-------------ceEEEecCCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCccccc
Q 024870 163 YPNNPVLQEDS-------------QWVAWVSSNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRLPA 229 (261)
Q Consensus 163 fP~~~~l~~~~-------------~~~~~~~~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~Pa 229 (261)
||+++..+++. +++.. .+++|.+|||||++.|++|++++++++|++|++++++++.++++ ..+||
T Consensus 143 ~p~~~~~~~~~~~~L~~~~~~~~~~~~~~-~~~~p~~~itltl~~l~~a~~vi~va~G~~Ka~ai~~al~g~~~-~~~Pa 220 (242)
T 2bkx_A 143 EPGTSFKSRTHVVTLNEQTRQANARYFPS-IDSVPKKALTMGIQTILSSKRILLLISGKSKAEAVRKLLEGNIS-EDFPA 220 (242)
T ss_dssp CTTCCTTCCSEEEECCHHHHHHHGGGSSS-GGGSCSEEEECCHHHHHTSSCEEEEECSGGGHHHHHHHHHTCCC-TTSGG
T ss_pred CCCCccccCceEEeCCHHHHHHHhhhcCC-CCCCCCccEEcCHHHHhhcCEEEEEEeChHHHHHHHHHHcCCCC-CcccH
Confidence 99987543321 01111 14677889999999999999999999999999999999999875 68999
Q ss_pred ccccccCCeEEEEecHHHHhcc
Q 024870 230 QLVSPKDGKLVWFADASAASFF 251 (261)
Q Consensus 230 s~l~~~~~~v~~~~D~~Aa~~l 251 (261)
|+++ .|++++||+|++||++|
T Consensus 221 s~l~-~~~~~~~~~D~~Aa~~l 241 (242)
T 2bkx_A 221 SALH-LHSDVTVLIDREAASLR 241 (242)
T ss_dssp GGGG-GCSSEEEEEETTTTTTC
T ss_pred HHhc-cCCCEEEEEchHHhccC
Confidence 9999 58999999999999887
No 15
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=100.00 E-value=3.1e-53 Score=375.32 Aligned_cols=230 Identities=17% Similarity=0.203 Sum_probs=204.3
Q ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHHHH-HhcCcEEEEEcCCCcHHHHHHhhCCCC-CCCCCCCcEEEEEecccc-cCCC
Q 024870 6 PELRLFDSCEELDSCLADYVYQISEAAI-RERGSFSLVLSGGDMPNRLGKLTRPPF-LRTVDWSKWHVFWAEENV-VPKR 82 (261)
Q Consensus 6 ~~i~i~~~~~~l~~~~A~~i~~~i~~~i-~~~~~~~l~lsGG~tp~~l~~~L~~~~-~~~i~w~~v~~f~~DEr~-vp~~ 82 (261)
|++++|+|.+++++++|++|.+.+++++ ++++.++|+|+||+||..+|+.|.+.+ ...++|++|++|++|||+ ||++
T Consensus 1 m~~~~~~~~~~l~~~aA~~l~~~l~~~~~~~~~~~~i~lsgGsTp~~~~~~L~~~~~~~~~~~~~v~v~~ldEr~gv~~~ 80 (266)
T 1fs5_A 1 MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKE 80 (266)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHHHCCCSSSCEEEEECCSSTTHHHHHHHHHHHHTTSCCCTTEEEEESEEESSCCTT
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHHhhhcccCceEEEEcCCCCHHHHHHHHHHHhhcCCCChHHeEEEeCeeccCCCCC
Confidence 7899999999999999999999998776 678899999999999999999997532 347999999999999999 9999
Q ss_pred CchhHHHHHHHHhcCCCCCCCCcEEcCCCC-CCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCcccc
Q 024870 83 HPDSFYRQAQEAFISKVPILPAHVIPVSHG-VPGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVAS 161 (261)
Q Consensus 83 ~~~Sn~~~~~~~ll~~~~ip~~~i~~~~~~-~~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~as 161 (261)
|++||+++++++|+++++++..++|.+++. .+++++|..|++.|++ .++||++|||||+|||+||
T Consensus 81 ~~~sn~~~~~~~l~~~~~~~~~~i~~p~~~~~~~e~~~~~y~~~l~~--------------~~~~Dl~llGiG~dGh~as 146 (266)
T 1fs5_A 81 HPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQYEEKIRS--------------YGKIHLFMGGVGNDGHIAF 146 (266)
T ss_dssp STTSHHHHHHHHTGGGSCCCGGGEECCCTTCSSHHHHHHHHHHHHHH--------------HCCCSEEEECCCTTCCSTT
T ss_pred CHHHHHHHHHHHhhccCCCCHHHEEeCCCCCCCHHHHHHHHHHHHHh--------------cCCCCEEEEccCCCCCeee
Confidence 999999999999999999999999999865 5899999999999986 4579999999999999999
Q ss_pred cCCCCCCCCCCCceEEEe-------------c-CCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCccc
Q 024870 162 IYPNNPVLQEDSQWVAWV-------------S-SNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRL 227 (261)
Q Consensus 162 lfP~~~~l~~~~~~~~~~-------------~-~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~ 227 (261)
|||+++.. +.++++... . +.+|..+||||++.|++|++|+++++|++|++++++++.++.+ ..+
T Consensus 147 l~pg~~~~-~~~~~~~l~~~~~~~~~~~f~~~~~~~p~~~itl~l~~l~~a~~vi~va~G~~Ka~ai~~al~g~~~-~~~ 224 (266)
T 1fs5_A 147 NEPASSLA-SRTRIKTLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVN-HMW 224 (266)
T ss_dssp CCSSCCTT-CCSEEEECCHHHHHHHGGGTTTCGGGSCSEEEECCHHHHHTSSCEEEEECSGGGHHHHHHHHHSCCC-SSS
T ss_pred cCCCCCCC-ccccEEEechhhhhhhhccccCCcCCCCcEEEECChHHHhcCCEEEEEecChHHHHHHHHHhcCCCC-CcC
Confidence 99998753 333333211 1 4556778999999999999999999999999999999999874 679
Q ss_pred ccccccccCCeEEEEecHHHHhccc
Q 024870 228 PAQLVSPKDGKLVWFADASAASFFL 252 (261)
Q Consensus 228 Pas~l~~~~~~v~~~~D~~Aa~~l~ 252 (261)
|+++++ .|++++|++|++||+.|.
T Consensus 225 Pas~l~-~~~~~~li~D~~aA~~L~ 248 (266)
T 1fs5_A 225 TISCLQ-LHPKAIMVCDEPSTMELK 248 (266)
T ss_dssp GGGGGG-GCSSEEEEECSGGGTTSB
T ss_pred ChHHHc-cCCCEEEEEeHHHhhhcc
Confidence 999999 699999999999999985
No 16
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=100.00 E-value=1.1e-50 Score=352.41 Aligned_cols=219 Identities=16% Similarity=0.199 Sum_probs=190.5
Q ss_pred CCeEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccc-cCCCC
Q 024870 5 EPELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENV-VPKRH 83 (261)
Q Consensus 5 ~~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~-vp~~~ 83 (261)
+|++++|+|.+++++++|++|.+.+ ++++. +|+|+||+||..+|+.|.+. .++|++|+||++|||+ ||++|
T Consensus 1 ~m~~~~~~~~~~l~~~aA~~l~~~i----~~~~~-~i~ls~G~T~~~~~~~L~~~---~~~~~~v~v~~ldEr~gv~~~~ 72 (234)
T 2ri0_A 1 SMKTIKVKNKTEGSKVAFRMLEEEI----TFGAK-TLGLATGSTPLELYKEIRES---HLDFSDMVSINLDEYVGLSADD 72 (234)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHH----HTTCC-EEEECCSSTTHHHHHHHHTS---CCCCTTCEEEESEEETTCCTTS
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHH----HhCCC-EEEEcCCCCHHHHHHHHHhc---CCChhheEEEeCeeecCCCCCC
Confidence 4899999999999999999998655 44667 99999999999999999853 6999999999999998 99999
Q ss_pred chhHHHHHHHHhcCCCCCCCCcEEcCCC-CCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCccccc
Q 024870 84 PDSFYRQAQEAFISKVPILPAHVIPVSH-GVPGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVASI 162 (261)
Q Consensus 84 ~~Sn~~~~~~~ll~~~~ip~~~i~~~~~-~~~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~asl 162 (261)
++||+++++++|+++++++.. |.+++ ..+++++|..|++.|++ ++||++|||||+|||+|||
T Consensus 73 ~~sn~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~y~~~i~~---------------~~~Dl~llGiG~dgh~a~l 135 (234)
T 2ri0_A 73 KQSYAYFMKQNLFAAKPFKKS--YLPNGLAADLAKETEYYDQILAQ---------------YPIDLQILGIGRNAHIGFN 135 (234)
T ss_dssp TTSHHHHHHHHTTTTSCCSEE--ECCCTTCSCHHHHHHHHHHHHHH---------------SCCSEEEECCCTTSCBTTB
T ss_pred hHHHHHHHHHHHhccCCCcHh--hcCCCCCCCHHHHHHHHHHHHHh---------------CCCCEEEEccCCCCCchhc
Confidence 999999999999999998776 33433 35899999999999985 3599999999999999999
Q ss_pred CCCCCCCCCCCceEEEe-----------c--CCCCCCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCccccc
Q 024870 163 YPNNPVLQEDSQWVAWV-----------S--SNAPRESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRLPA 229 (261)
Q Consensus 163 fP~~~~l~~~~~~~~~~-----------~--~~~p~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~Pa 229 (261)
||+++.. +.++++... + +.+|.+|||||++.|++|++++++++|++|++++++++.++++ ..+||
T Consensus 136 ~p~~~~~-~~~~~~~l~~~~~~~~~~~fd~~~~~~~~~itl~l~~l~~a~~vi~va~G~~Ka~ai~~al~g~~~-~~~Pa 213 (234)
T 2ri0_A 136 EPGTAFS-SQTHLVDLTPSTIAANSRFFEKAEDVPKQAISMGLASIMSAKMILLMAFGEEKAEAVAAMVKGPVT-EEIPA 213 (234)
T ss_dssp CTTCCTT-CCSEEEECCHHHHHHHHTTCSCGGGSCCEEEECCHHHHHTSSEEEEEECSGGGHHHHHHHHHSCCC-TTSGG
T ss_pred CCCCCCC-CCceEEECCHHHHHHhhhhcCCccCCCCceEEeCHHHHhhcCEEEEEEeChHHHHHHHHHHcCCCC-Cccch
Confidence 9998743 333333321 2 3468889999999999999999999999999999999999875 68999
Q ss_pred ccccccCCeEEEEecHHHHhcc
Q 024870 230 QLVSPKDGKLVWFADASAASFF 251 (261)
Q Consensus 230 s~l~~~~~~v~~~~D~~Aa~~l 251 (261)
|+++ .|++++||+|++||++|
T Consensus 214 s~l~-~~~~~~~~~D~~Aa~~l 234 (234)
T 2ri0_A 214 SILQ-THPKVILIVDEKAGAGI 234 (234)
T ss_dssp GGGG-GCSSEEEEEETTTTTTC
T ss_pred HHHh-hCCCEEEEEchHHhccC
Confidence 9999 58999999999999864
No 17
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich, rossmann-like fold, structural genomics, PSI-2, protein structure initiative; HET: MSE G3H; 1.65A {Bacillus subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A* 3bxh_A*
Probab=99.91 E-value=2.2e-25 Score=195.84 Aligned_cols=202 Identities=12% Similarity=0.073 Sum_probs=157.0
Q ss_pred CeEEEeCC--------HHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEeccc
Q 024870 6 PELRLFDS--------CEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEEN 77 (261)
Q Consensus 6 ~~i~i~~~--------~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr 77 (261)
+++.|.++ .+++++++|+++.+.+ + +..+|+|++|+||..+|+.|... ++|+++.||++|+
T Consensus 23 ~~viVv~~~~~~~~~~~~~l~~~aA~~l~~~l----~--~~~viGla~G~T~~~~~~~l~~~----~~~~~v~~v~L~g- 91 (255)
T 2okg_A 23 KDAIIVSGDSDQSPWVKKEMGRAAVACMKKRF----S--GKNIVAVTGGTTIEAVAEMMTPD----SKNRELLFVPARG- 91 (255)
T ss_dssp SEEEEESSCTTTCTHHHHHHHHHHHHHHHHHC----C--SEEEEEECCSHHHHHHHHHCCCC----TTCCEEEEEESEE-
T ss_pred CeEEEECCCCCchhHHHHHHHHHHHHHHHHhC----C--CCCEEEECCcHHHHHHHHhhccc----cCCCCCEEEECCC-
Confidence 45666665 5678888888877543 2 57899999999999999999752 5899999999997
Q ss_pred ccCCCCchhHHHHHHHHhcCCCCCCCCcEEcCCCCC----CHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecC
Q 024870 78 VVPKRHPDSFYRQAQEAFISKVPILPAHVIPVSHGV----PGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTL 153 (261)
Q Consensus 78 ~vp~~~~~Sn~~~~~~~ll~~~~ip~~~i~~~~~~~----~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~ 153 (261)
-++. |++|+..+|.+.|+++++++..++|.++... +...+|..|++.|+. .++.|++++||
T Consensus 92 gl~~-~~~~~~~~~~~~la~~~~~~~~~l~~P~~~~~~~~~~l~~~~~~~~~l~~--------------~~~~Di~l~GI 156 (255)
T 2okg_A 92 GLGE-DVKNQANTICAHMAEKASGTYRLLFVPGQLSQGAYSSIIEEPSVKEVLNT--------------IKSASMLVHGI 156 (255)
T ss_dssp ECC----CCHHHHHHHHHHHHHTCEECCCCCCCSCCHHHHHHHHTSHHHHHHHHH--------------HHTCSEEEECC
T ss_pred CCCC-CcccCHHHHHHHHHHHHCCeeEEEeccccCCHHHHHHHHcChHHHHHHHH--------------HhcCCEEEEec
Confidence 4677 8999999999999999999888888776643 223567889998875 45799999999
Q ss_pred CCCCcccccCCCCCCCCCC---------------CceEEEecCCCC-CCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHH
Q 024870 154 GTRCDVASIYPNNPVLQED---------------SQWVAWVSSNAP-RESVTLTLPVINAAANVAIVASGIDVARPFLHV 217 (261)
Q Consensus 154 G~DGH~aslfP~~~~l~~~---------------~~~~~~~~~~~p-~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~ 217 (261)
|.+||++ +|+. .+++ .++|..-...+| .+.|||++..|++++++++++.|++|+++++.+
T Consensus 157 G~~~~i~--~~g~--~~~~~~~~L~~~~avg~~~~rffd~~G~~V~~~~~igi~l~~i~~~~~vI~vA~G~~Ka~AI~aa 232 (255)
T 2okg_A 157 GEAKTMA--QRRN--TPLEDLKKIDDNDAVTEAFGYYFNADGEVVHKVHSVGMQLDDIDAIPDIIAVAGGSSKAEAIEAY 232 (255)
T ss_dssp EEHHHHH--HHTT--CCHHHHHHHHHTTEEEEETTEEEETTSCEEEECSEEECCGGGGGGCSEEEEECCSGGGHHHHHHH
T ss_pred CCchhhh--hcCC--CCHHHHHHHHHCCeEEEeehhhhccCCCCccCCceecCCHHHHhCCCCEEEEEcCHHHHHHHHHH
Confidence 9999997 7772 2221 112211102345 678999999999999999999999999999999
Q ss_pred hcCCCCCcccccccccccCCeEEEEecHHHHhccc
Q 024870 218 MMDQKPNRRLPAQLVSPKDGKLVWFADASAASFFL 252 (261)
Q Consensus 218 l~~~~~~~~~Pas~l~~~~~~v~~~~D~~Aa~~l~ 252 (261)
|.++.. .++++|++||+.|-
T Consensus 233 l~g~~~---------------~~LItDe~aA~~LL 252 (255)
T 2okg_A 233 FKKPRN---------------TVLVTDEGAAKKLL 252 (255)
T ss_dssp TTSCCC---------------EEEEEEHHHHHHHH
T ss_pred HhCCCC---------------CEEEECHHHHHHHH
Confidence 998531 38899999998763
No 18
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Probab=99.91 E-value=2.8e-24 Score=189.67 Aligned_cols=193 Identities=10% Similarity=0.022 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEEEc-CCCcHHHHHHhhCCCCCCCCCCC-cEEEEEecccccCCCCchhHHHHHH
Q 024870 15 EELDSCLADYVYQISEAAIRERGSFSLVLS-GGDMPNRLGKLTRPPFLRTVDWS-KWHVFWAEENVVPKRHPDSFYRQAQ 92 (261)
Q Consensus 15 ~~l~~~~A~~i~~~i~~~i~~~~~~~l~ls-GG~tp~~l~~~L~~~~~~~i~w~-~v~~f~~DEr~vp~~~~~Sn~~~~~ 92 (261)
+++++++|+++. +.++ +..+|+|+ +|+||..+|+.|... .. |+ ++.||++|| -++ +|++|+..+|.
T Consensus 41 ~~l~~~aA~~l~----~~l~--~~~viGla~~G~T~~~~~~~l~~~---~~-~~~~v~~v~L~g-gl~-~~~~~~~~~~~ 108 (264)
T 2r5f_A 41 QAIGSAAAHYLE----TSLS--AQDHIGISSWSSTIRAMVSHMHPQ---PG-KQSAQEVVQLLG-GVG-NKGAFEATLLT 108 (264)
T ss_dssp HHHHHHHHHHHH----HHCC--TTCEEEECTTCHHHHHHHHTCCC-----C-CCCCSEEEECEE-CCC---CHHHHHHHH
T ss_pred HHHHHHHHHHHH----HhCC--CCCEEEECcchHHHHHHHHhhccc---cC-CCCCcEEEECCC-CCC-CccccCHHHHH
Confidence 345555555555 4443 46789999 999999999999864 22 67 999999999 577 99999999999
Q ss_pred HHhcCCCCCCCCcEEcCCCC-----CCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCC---CcccccCC
Q 024870 93 EAFISKVPILPAHVIPVSHG-----VPGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTR---CDVASIYP 164 (261)
Q Consensus 93 ~~ll~~~~ip~~~i~~~~~~-----~~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~D---GH~aslfP 164 (261)
+.|+++++++..++|.+... .+...+|..|++.|+. .++.|++++|||.+ ||+ ++ |
T Consensus 109 ~~la~~~~~~~~~l~~P~~~~~~~~~~~~~~~~~~~~~l~~--------------~~~~Di~l~GIG~~~~~~~i-~~-~ 172 (264)
T 2r5f_A 109 QRLATLLNCPAFLLPSQSIEQSVESKQRIVEMEEVKEVLHR--------------FDSITLAIVGIGELEPSQLL-RN-S 172 (264)
T ss_dssp HHHHHHHTSCEECCCCC----------CCHHHHHHHHHHHH--------------TTTCCEEEECCEECC----------
T ss_pred HHHHHHhCCeeEEeeCCcccCCHHHHHHHHcChHHHHHHHH--------------HhcCCEEEEecCCCCCCccH-hh-c
Confidence 99999999888777766432 2556788999999986 66899999999987 999 77 7
Q ss_pred CCCCCCC--------CC-------ceEEEecCCCC----CCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCc
Q 024870 165 NNPVLQE--------DS-------QWVAWVSSNAP----RESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNR 225 (261)
Q Consensus 165 ~~~~l~~--------~~-------~~~~~~~~~~p----~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~ 225 (261)
|+ ..++ .+ ++|..-...+| .+.|||++..|++++++++++.|++|+++++.+|.++..
T Consensus 173 g~-~~~~~~~~~L~~~~avgd~~~rffd~~G~~V~~~~~~r~i~i~l~~l~~~~~vI~vA~G~~Ka~AI~aal~g~~~-- 249 (264)
T 2r5f_A 173 GN-YYTEDMLRVLAERGAVGDICLRYFDAQGKPVLEEDEEFVVSMGLGKLRSINRVLGLAGGVRKVQAIKGALLGGYL-- 249 (264)
T ss_dssp ------------CTTTTCCEEETTEEECTTSCBC-------CEECCHHHHHTSSEEEEECCCGGGHHHHHHHHHTTCC--
T ss_pred CC-CCCHHHHHHHHHCCcEEEeEhhhhccCCCCCCCccccceecCCHHHHcCCCCEEEEEcCHHHHHHHHHHHhcCCC--
Confidence 73 2221 11 12210003455 678999999999999999999999999999999998642
Q ss_pred ccccccccccCCeEEEEecHHHHhcc
Q 024870 226 RLPAQLVSPKDGKLVWFADASAASFF 251 (261)
Q Consensus 226 ~~Pas~l~~~~~~v~~~~D~~Aa~~l 251 (261)
.++++|++||+.|
T Consensus 250 -------------~~LItDe~aA~~L 262 (264)
T 2r5f_A 250 -------------DVLITDVGTARGL 262 (264)
T ss_dssp -------------SEEEEEHHHHHHH
T ss_pred -------------CEEEECHHHHHHH
Confidence 2789999999875
No 19
>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799, streptococcus pneumonia PSI, protein structure initiative; 1.65A {Streptococcus pneumoniae} SCOP: c.124.1.8
Probab=99.88 E-value=6.8e-23 Score=181.01 Aligned_cols=197 Identities=12% Similarity=0.068 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCchhHHHHHHHH
Q 024870 15 EELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPDSFYRQAQEA 94 (261)
Q Consensus 15 ~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~~~~~ 94 (261)
+++++++|+++. +.++ +..+|+|++|+||..+|+.|.. .+|+++.||++|+ -++.+|++|+..+|.+.
T Consensus 41 ~~l~~~aA~~l~----~~l~--~~~viGla~G~T~~~~~~~l~~-----~~~~~v~~v~L~g-gl~~~~~~~~~~~~~~~ 108 (266)
T 2gnp_A 41 ERISQVAAGVLR----NLID--DNMKIGFSWGKSLSNLVDLIHS-----KSVRNVHFYPLAG-GPSHIHAKYHVNTLIYE 108 (266)
T ss_dssp HHHHHHHHHHHH----HHCC--TTCEEEECCSHHHHHHHHHCCC-----CCCSSCEEEESBC-CCTTSCGGGSHHHHHHH
T ss_pred HHHHHHHHHHHH----HhCC--CCCEEEECChHHHHHHHHhccc-----cCCCCCEEEECCC-CCCCCccccCHHHHHHH
Confidence 445666666665 4443 4678999999999999999985 4899999999997 57889999999999999
Q ss_pred hcCCCCCCCCcEEcCCCCC-----CHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCccccc-CCCCCC
Q 024870 95 FISKVPILPAHVIPVSHGV-----PGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVASI-YPNNPV 168 (261)
Q Consensus 95 ll~~~~ip~~~i~~~~~~~-----~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~asl-fP~~~~ 168 (261)
|+++++++..++|.+.... +...+|..|++.|+. .++.|++++|||.+||-+++ +|+-..
T Consensus 109 la~~~~~~~~~l~~P~~~~~~~~~~~~~~~~~~~~~l~~--------------~~~~Di~l~GIG~~~~~~~~~~~g~~s 174 (266)
T 2gnp_A 109 MSRKFHGECTFMNATIVQENKLLADGILQSRYFENLKNS--------------WKDLDIAVVGIGDFSNKGKHQWLDMLT 174 (266)
T ss_dssp HHHHHTCEECCCCSCSBCSSHHHHHHHHTSTTTHHHHHH--------------TTSCSEEEECCEECSHHHHHTTTTTSC
T ss_pred HHHHhCCeeEEEeCCcccCCHHHHHHHHcCHHHHHHHHH--------------HHhCCEEEEecCCCCCCCcchhcCCCC
Confidence 9999999888887765432 456677889998885 66899999999999986555 344210
Q ss_pred ------CCCC-------CceEEEecCCCC----CCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCccccccc
Q 024870 169 ------LQED-------SQWVAWVSSNAP----RESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRLPAQL 231 (261)
Q Consensus 169 ------l~~~-------~~~~~~~~~~~p----~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~Pas~ 231 (261)
+.+. .++|..-...+| .+.|||++..|++++++++++.|++|+++++.+|.++..
T Consensus 175 ~~~~~~L~~~~avgd~~~rffd~~G~~V~~~~~~r~i~i~l~~i~~~~~vI~vA~G~~Ka~AI~aal~g~~~-------- 246 (266)
T 2gnp_A 175 EDDFKELTKVKTVGEICCRFFDSKGKEVYENLQERTIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRANLV-------- 246 (266)
T ss_dssp HHHHHHHHHTTCCEEETTEEECTTSCCCCHHHHTTBCBCCHHHHTTSSEEEEECCSGGGHHHHHHHHHTTCC--------
T ss_pred HHHHHHHHHCCeEEEEEchhhccCCCCCCCccccceecCCHHHHcCCCCEEEEecChhhHHHHHHHHhcCCC--------
Confidence 1111 112211103567 789999999999999999999999999999999998642
Q ss_pred ccccCCeEEEEecHHHHhccc
Q 024870 232 VSPKDGKLVWFADASAASFFL 252 (261)
Q Consensus 232 l~~~~~~v~~~~D~~Aa~~l~ 252 (261)
.++++|++||+.|.
T Consensus 247 -------~~LItDe~aA~~Ll 260 (266)
T 2gnp_A 247 -------NHLITDKNTILKVL 260 (266)
T ss_dssp -------SEEEEEHHHHHHHH
T ss_pred -------CEEEECHHHHHHHH
Confidence 27899999998763
No 20
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=99.85 E-value=2.6e-22 Score=183.39 Aligned_cols=197 Identities=10% Similarity=0.044 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCchhHHHHHHH
Q 024870 14 CEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPDSFYRQAQE 93 (261)
Q Consensus 14 ~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~~~~ 93 (261)
.+++++++|+++.+ .++.+ ..+|+|++|+||..+|+.|... .++|+++++|.+|+ -++. |++||..+|.+
T Consensus 124 k~~ia~~AA~~l~~----~i~~~-~~~igl~~GsT~~~~~~~L~~~---~~~~~~v~vv~l~g-gl~~-~~~~~~~~i~~ 193 (345)
T 2o0m_A 124 LSDFGDVLTNTLNL----LLPNG-ENTIAVMGGTTMAMVAENMGSL---ETEKRHNLFVPARG-GIGE-AVSVQANSISA 193 (345)
T ss_dssp HHHHHHHHHHHHHH----HCCSE-EEEEEECCSHHHHHHHHTCCCC---CCSSEEEEEEESBS-CCCC-CGGGSHHHHHH
T ss_pred HHHHHHHHHHHHHH----hcCcC-CCEEEECCcHHHHHHHHHhhhc---cCCCCCcEEEEcCC-cCCC-CcccCHHHHHH
Confidence 35677777776664 33322 6899999999999999999864 26889999999998 5677 89999999999
Q ss_pred HhcCCCCCCCCcEEcCCCCCC----HHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCcccccCCCCCCC
Q 024870 94 AFISKVPILPAHVIPVSHGVP----GESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVASIYPNNPVL 169 (261)
Q Consensus 94 ~ll~~~~ip~~~i~~~~~~~~----~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~aslfP~~~~l 169 (261)
.|+++++++..++|.++...+ ...+|..|++.|+. .+++|++++|+|.+||++ +||- .
T Consensus 194 ~la~~~~~~~~~l~~P~~~~~~~~~~l~~~~~~~~~l~~--------------~~~~DiailGIG~~~~i~--~~g~--~ 255 (345)
T 2o0m_A 194 VMANKTGGNYRALYVPEQLSRETYNSLLQEPSIQEVLTL--------------ISHANCVVHSIGRALHMA--ARRK--M 255 (345)
T ss_dssp HHHHHHTCEECCCCCCSSCCHHHHHHHHTCHHHHHHHHH--------------HHTCSEEEECCEEHHHHH--HHTT--C
T ss_pred HHHHHhCCceEEEeccccCCHHHHHHHHhChHHHHHHHH--------------HHcCCEEEEccCCchhhh--hcCC--C
Confidence 999999887777766655431 22457788888875 457999999999999987 7772 2
Q ss_pred CC--------C-------CceEEEecCCCC-CCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcC-CCCCcccccccc
Q 024870 170 QE--------D-------SQWVAWVSSNAP-RESVTLTLPVINAAANVAIVASGIDVARPFLHVMMD-QKPNRRLPAQLV 232 (261)
Q Consensus 170 ~~--------~-------~~~~~~~~~~~p-~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~-~~~~~~~Pas~l 232 (261)
+. . .++|..-...+| .+.|||++..|+++++++++|.|++|+++++.++.+ +..
T Consensus 256 ~~~~~~~L~~~~avg~~~~~ffd~~g~~v~~~~~i~i~l~~l~~~~~vi~vA~G~~Ka~Ai~~al~g~~~~--------- 326 (345)
T 2o0m_A 256 SDDEMVMLKQKNAVAESFGYFFDEEGKVVYKIPRIGLQLKNLQEIPYVVAIAGGKTKAKAIRAYMKNAPKQ--------- 326 (345)
T ss_dssp CHHHHHHHHHTTCCEEETTEEECTTSCEEEECCCSBCCGGGGGGCSEEEEECCSGGGHHHHHHHHTTSCTT---------
T ss_pred CHHHHHHHHHCCeEEEeeccccccCCCCcCCCceecCCHHHHcCCCCEEEEEcChHHHHHHHHHHhCCCCC---------
Confidence 21 1 112210002234 568999999999999999999999999999999998 642
Q ss_pred cccCCeEEEEecHHHHhcccc
Q 024870 233 SPKDGKLVWFADASAASFFLR 253 (261)
Q Consensus 233 ~~~~~~v~~~~D~~Aa~~l~~ 253 (261)
+++++|++||+.|..
T Consensus 327 ------~~LitDe~aA~~ll~ 341 (345)
T 2o0m_A 327 ------TWLITDEAAANEILK 341 (345)
T ss_dssp ------CEEEEEHHHHHHHTC
T ss_pred ------eEEEECHHHHHHHHh
Confidence 778999999987643
No 21
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=99.84 E-value=6.5e-21 Score=171.97 Aligned_cols=196 Identities=8% Similarity=-0.033 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccC-CCCchhHHHHHH
Q 024870 14 CEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVP-KRHPDSFYRQAQ 92 (261)
Q Consensus 14 ~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp-~~~~~Sn~~~~~ 92 (261)
.+++++++|+++.+. ++ +..+|+|++|+||..+|+.|... .+|++++|+.+|. -++ .+|++||..+|.
T Consensus 92 k~~ia~~AA~~l~~~----i~--~~~~igl~~GsT~~~~~~~L~~~----~~~~~~~vv~l~g-gl~~~~~~~~~~~~i~ 160 (315)
T 2w48_A 92 LSAMGQHGALLVDRL----LE--PGDIIGFSWGRAVRSLVENLPQR----SQSRQVICVPIIG-GPSGKLESRYHVNTLT 160 (315)
T ss_dssp HHHHHHHHHHHHHHH----CC--TTCEEEECCSHHHHHHHTTSCCC----SSCCCCEEEESBC-BCTTSSCGGGCHHHHH
T ss_pred HHHHHHHHHHHHHHh----CC--CCCEEEECChHHHHHHHHhhccc----cCCCCcEEEEcCC-CCCCCCccccCHHHHH
Confidence 355677777766643 33 45689999999999999999753 2788999999995 467 889999999999
Q ss_pred HHhcCCCCCCCCcEEcCCCCC-----CHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCcccccCC-CC
Q 024870 93 EAFISKVPILPAHVIPVSHGV-----PGESAANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVASIYP-NN 166 (261)
Q Consensus 93 ~~ll~~~~ip~~~i~~~~~~~-----~~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~aslfP-~~ 166 (261)
+.|+++++++..++|.+.... +...+|..|++.|+. .+++|++++|+| ||++++-| ++
T Consensus 161 ~~la~~~~~~~~~l~~P~~~~~~~~~~~l~~~~~~~~~l~~--------------~~~~DiailGIG--g~~~~~g~~~~ 224 (315)
T 2w48_A 161 YGAAARLKAESHLADFPALLDNPLIRNGIMQSQHFKTISSY--------------WDSLDVALVGIG--SPAIRDGANWH 224 (315)
T ss_dssp HHHHHHTTCEECCCCSBSBCSSHHHHHHHHHSHHHHHHHHH--------------HTTCSEEEECCB--CTTCCSSSCHH
T ss_pred HHHHHHHCCceeEeeCCcccCCHHHHHHHHhChHHHHHHHH--------------HhcCCEEEEccC--cchhhcCcccc
Confidence 999999988777766554332 233567889998885 567999999999 99998854 00
Q ss_pred CCCCC--------C-------CceEEEecCCCC----CCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCccc
Q 024870 167 PVLQE--------D-------SQWVAWVSSNAP----RESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRL 227 (261)
Q Consensus 167 ~~l~~--------~-------~~~~~~~~~~~p----~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~ 227 (261)
+..+. . .++|..-...+| .+.|||++..|+++++++++|.|++|+++++.+|.++..
T Consensus 225 ~~~~~~~~~~L~~~~avg~~~~rffd~~g~~v~~~~~~~~i~~~l~~i~~~~~ii~vA~G~~Ka~Ai~~al~g~~~---- 300 (315)
T 2w48_A 225 AFYGSEESDDLNARHVAGDICSRFYDINGGLVDTNMSEKTLSIEMAKLRQARYSIGIAMGEEKYSGILGALHGRYI---- 300 (315)
T ss_dssp HHHCTHHHHHHHHTTEEEEETTEEEETTSCBCCCSSGGGBCBCCHHHHHTSSEEEEECCCGGGHHHHHHHHHTTSC----
T ss_pred ccCCHHHHHHHHHCCcEEEEECceECCCCCEeCCccccceecCCHHHHhCCCCEEEEecChHhHHHHHHHHhCCCC----
Confidence 11111 1 122221113455 678999999999999999999999999999999998542
Q ss_pred ccccccccCCeEEEEecHHHHhcc
Q 024870 228 PAQLVSPKDGKLVWFADASAASFF 251 (261)
Q Consensus 228 Pas~l~~~~~~v~~~~D~~Aa~~l 251 (261)
.++++|++||+.|
T Consensus 301 -----------~~LitDe~aA~~l 313 (315)
T 2w48_A 301 -----------NCLVTNRETAELL 313 (315)
T ss_dssp -----------SEEEEEHHHHHHH
T ss_pred -----------CEEEECHHHHHHH
Confidence 2789999999875
No 22
>3nze_A Putative transcriptional regulator, sugar-binding; structural genomics, PSI-2, protein structure initiative; 1.70A {Arthrobacter aurescens} SCOP: c.124.1.0
Probab=99.61 E-value=5.9e-15 Score=130.18 Aligned_cols=197 Identities=8% Similarity=-0.031 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCch-hHHHHHHHH
Q 024870 16 ELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPD-SFYRQAQEA 94 (261)
Q Consensus 16 ~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~~-Sn~~~~~~~ 94 (261)
+..+.+++..++.+.+.++ +.-+|++++|+|+..+++.|.. .+++++.|+.+++ -++.+++. ++...+.+.
T Consensus 37 ~~~~~lg~~aA~~L~~~l~--~~~viGv~wG~T~~~v~~~l~~-----~~~~~~~vV~l~G-g~~~~~~~~~~~n~i~~~ 108 (267)
T 3nze_A 37 ETLDRVAMQAARTIGPLVD--SNAIIGVAWGATLSAVSRHLTR-----KMTHDSIVVQLNG-AGNMQTTGITYASDIMRR 108 (267)
T ss_dssp HHHHHHHHHHHHHHGGGCC--SSCEEEECCSHHHHHHHHTCCC-----CCCSSCEEEECSC-CCCTTSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC--CCCEEEECCCHHHHHHHHhcCc-----cCCCCCEEEECCC-CCCCCccccccHHHHHHH
Confidence 3444455555544445553 4579999999999999999974 4688999999999 56666776 455688888
Q ss_pred hcCCCCCCCCcEEcCCCCCCHHH-----HHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCcccccCCCCCCC
Q 024870 95 FISKVPILPAHVIPVSHGVPGES-----AANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVASIYPNNPVL 169 (261)
Q Consensus 95 ll~~~~ip~~~i~~~~~~~~~~~-----~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~aslfP~~~~l 169 (261)
|.++++.....+|.+....+++. ....|++.++. ..+.|++++|||..+| +|++...
T Consensus 109 lA~~~~~~~~~l~~P~~~~s~~~~~~l~~~~~i~~~l~~--------------~~~~Diai~GIG~~~~----~~~s~~~ 170 (267)
T 3nze_A 109 FGSAYGARVEQFPVPAFFDHASTKTAMWNERSVQRILDL--------------QARMSIAIFGVGSVDS----DYPSHVY 170 (267)
T ss_dssp HHHHHTCEEECCCSCSSCSSHHHHHHHTTCHHHHHHHHH--------------HHTCSEEEECCEECC---------CCC
T ss_pred HHHHhCCeEEEeeCCEEcCCHHHHHHHHhChHHHHHHHH--------------HhcCCEEEEecCCCCC----CCCChHH
Confidence 99999875555555544333431 23456666654 4578999999999997 3443322
Q ss_pred -----CCC---------------CceEEEecCCC-C----CCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCC
Q 024870 170 -----QED---------------SQWVAWVSSNA-P----RESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPN 224 (261)
Q Consensus 170 -----~~~---------------~~~~~~~~~~~-p----~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~ 224 (261)
++. .++|.. +.+. + .+.|+|++..|++++++++++.|.+|+++++.+|.+..-
T Consensus 171 ~~g~~s~~~~~~L~~~gaVGdi~~~ffd~-~G~~v~~~~~~r~i~~~l~~l~~~~~vi~vA~G~~Ka~Ai~aal~g~~~- 248 (267)
T 3nze_A 171 AGGYLDEHDLTMLAADDVVGDVATVFFRS-DGSSDGITLNERSTGPSHEQLRQVRRRICVVSGASKINGLQGALAAGLA- 248 (267)
T ss_dssp TTSCCCHHHHHHHHHTTEEEEETTEEEET-TSCCTTCGGGGGCCSCCHHHHHTSSEEEEEECCGGGHHHHHHHHHTTCC-
T ss_pred HcCCCCHHHHHHHHHCCcEEEEecccccC-CCCCCCcchhcceecCChHHHccCCeEEEEeCChHHHHHHHHHHhcCCC-
Confidence 110 112221 1122 2 567999999999999999999999999999999998421
Q ss_pred cccccccccccCCeEEEEecHHHHhccccC
Q 024870 225 RRLPAQLVSPKDGKLVWFADASAASFFLRG 254 (261)
Q Consensus 225 ~~~Pas~l~~~~~~v~~~~D~~Aa~~l~~~ 254 (261)
-++++|+.+|..|-..
T Consensus 249 --------------~~LITDe~tA~~lL~~ 264 (267)
T 3nze_A 249 --------------TDLILDEASARRLVSF 264 (267)
T ss_dssp --------------SEEEEEHHHHHHHTC-
T ss_pred --------------CEEEeCHHHHHHHHhh
Confidence 2468999999886543
No 23
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8
Probab=99.33 E-value=7.4e-12 Score=110.17 Aligned_cols=194 Identities=7% Similarity=-0.053 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCC-CcEEEEEecccccCCCCchhHHHHHHHH
Q 024870 16 ELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDW-SKWHVFWAEENVVPKRHPDSFYRQAQEA 94 (261)
Q Consensus 16 ~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w-~~v~~f~~DEr~vp~~~~~Sn~~~~~~~ 94 (261)
++++.+|+++. +.+ ++.-+|++++|+|+..+++.|... +. .++.|+.+.--....+++.++...+.+.
T Consensus 45 ~lg~~aA~~L~----~~l--~~~~vIGv~wG~Tl~~v~~~l~~~-----~~~~~~~~V~l~Gg~~~~~~~~~~~n~i~~~ 113 (266)
T 3efb_A 45 MMGLHGAQLLD----RLL--EPGDIVGFSWGRAVSALVENLPQA-----GQSRQLICVPIIGGPSGKLESRYHVNTLTYS 113 (266)
T ss_dssp HHHHHHHHHHH----HHC--CTTCEEEECCSHHHHHHHHTCCCC-----SSCCCCEEEESBCBCTTSSCGGGCHHHHHHH
T ss_pred HHHHHHHHHHH----HhC--CCCCEEEEcccHHHHHHHHhcCcc-----CCCCCeEEEEcCCCCCCCCccccCHHHHHHH
Confidence 45555555555 554 344799999999999999998653 22 3688889888655567788887788888
Q ss_pred hcCCCCCCCCcEEcCCCCCCHHH-----HHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCcccccCCCCCCC
Q 024870 95 FISKVPILPAHVIPVSHGVPGES-----AANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVASIYPNNPVL 169 (261)
Q Consensus 95 ll~~~~ip~~~i~~~~~~~~~~~-----~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~aslfP~~~~l 169 (261)
|-++++.....+|.+..-.+++. ....|++.++. ....|++++|+|....-.+++-. ..+
T Consensus 114 lA~~~~~~~~~l~aP~~~~~~~~~~~l~~~~~i~~vl~~--------------~~~aDiai~GIG~~~~~~~~~~~-g~~ 178 (266)
T 3efb_A 114 AAAKLKGESHLADFPALLDNPLIRNGIMQSQHFKTISAY--------------WDNLDIALVGIGSPAIRDGANWH-AFY 178 (266)
T ss_dssp HHHHTTCEECCCCSBSBCSSHHHHHHHHTSHHHHHHHHH--------------HHTCSEEEECCBCCC----------CS
T ss_pred HHHHhCCeEEEEeCCeecCCHHHHHHHHhChHHHHHHHH--------------HhcCCEEEEecCCCCCCchhHHh-cCC
Confidence 88888876666655544344432 22445555553 34689999999986432222110 012
Q ss_pred CC--------C-------CceEEEecCC-CC----CCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCccccc
Q 024870 170 QE--------D-------SQWVAWVSSN-AP----RESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRLPA 229 (261)
Q Consensus 170 ~~--------~-------~~~~~~~~~~-~p----~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~Pa 229 (261)
++ . .++|.. +.+ ++ .+.|+|++..|++++++++++.|.+|+++++.+|.+..-
T Consensus 179 s~~~~~~L~~~gaVGdi~~~ffd~-~G~~v~~~~~~r~i~~~l~~l~~~~~~i~va~G~~Ka~Ai~aal~g~~~------ 251 (266)
T 3efb_A 179 GGEESDDLNARQVAGDICSRFFDI-HGAMVETNMSEKTLSIEMNKLKQARYSIGIAMSEEKYSGIIGALRGKYI------ 251 (266)
T ss_dssp CHHHHHHHHHTTCCEEETTEEECT-TSCBCCCTTGGGBCBCCHHHHHTSSEEEEECCCSCSSCHHHHHHHTTSC------
T ss_pred CHHHHHHHHHCCcEEEEecccccC-CCCCCCcchhcceecCCHHHHhCCCCEEEEecChHHHHHHHHHHhcCCC------
Confidence 11 0 122211 112 22 368999999999999999999999999999999998421
Q ss_pred ccccccCCeEEEEecHHHHhcc
Q 024870 230 QLVSPKDGKLVWFADASAASFF 251 (261)
Q Consensus 230 s~l~~~~~~v~~~~D~~Aa~~l 251 (261)
-++++|+.+|..|
T Consensus 252 ---------~~LITDe~tA~~l 264 (266)
T 3efb_A 252 ---------NCLVTNSSTAELL 264 (266)
T ss_dssp ---------SEEEEEHHHHHHH
T ss_pred ---------CEEEeCHHHHHHH
Confidence 2457999988765
No 24
>3kv1_A Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Vibrio fischeri} SCOP: c.124.1.0
Probab=99.26 E-value=5.1e-12 Score=111.30 Aligned_cols=196 Identities=9% Similarity=0.040 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCchhHHHHHHHH
Q 024870 15 EELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPDSFYRQAQEA 94 (261)
Q Consensus 15 ~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~~~~~ 94 (261)
+++++.+|+++. +.++ +.-+|++++|+|+..+++.|.. .++.++.|+.+.- -++.+++.++...+.+.
T Consensus 39 ~~lg~aaA~~L~----~~l~--~~~vIGv~wG~Tl~~v~~~l~~-----~~~~~~~~V~l~G-G~~~~~~~~~~~~i~~~ 106 (267)
T 3kv1_A 39 KQVAALVSSYLN----NNLQ--EGMAVAVGQGQNVAAVADHAGI-----VTQRNARFVSAIG-GTHRSGDIINADHICRR 106 (267)
T ss_dssp HHHHHHHHHHHH----HHCC--TTCEEEECCSHHHHHHHHCCCC-----CCCCCCEEEESBC-BCC----CCCHHHHHHH
T ss_pred HHHHHHHHHHHH----HhCC--CCCEEEECchHHHHHHHHhccc-----cCCCCCEEEeCCC-CCCCCccccCHHHHHHH
Confidence 345555555555 5443 4479999999999999999864 4678899999887 46667777788888888
Q ss_pred hcCCCCCCCCcEEcCCCCCCHH-H----HHHHHHHHHHHhhhccCCCCCCCCCCCcccEEEecCCCCCcccccCC-----
Q 024870 95 FISKVPILPAHVIPVSHGVPGE-S----AANNYEFSIRQQVRKRTVPVSPSSDCPQFDLVLLTLGTRCDVASIYP----- 164 (261)
Q Consensus 95 ll~~~~ip~~~i~~~~~~~~~~-~----~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH~aslfP----- 164 (261)
|-++++.....+|.+..-.+++ . ....|++.++. ....|++++|||..+--++++-
T Consensus 107 lA~~~~~~~~~l~~P~~~~~~~~~~~l~~~~~i~~vl~~--------------~~~aDiai~GIG~~~~~s~l~~~g~~~ 172 (267)
T 3kv1_A 107 LAKKYGGSSETLYAPAYVNDPSLRSAFMEHATIKETLSQ--------------ARKAEFALVGIGDMDENSHMVKLGFFT 172 (267)
T ss_dssp HHHHHTCEEECCCSBSBCSSHHHHHHHHTSHHHHHHHHH--------------HHTCSEEEEEEEEHHHHTHHHHTTSSC
T ss_pred HHHHhCCeEEEEecCcccCCHHHHHHHHhChHHHHHHHH--------------HHhCCEEEEeCCCCCCccHHHHhCCCC
Confidence 8888876444444443333433 1 12345555553 3468999999998774222221
Q ss_pred CCC--CC-CC-------CC-ceEEEecCCCC----CCeeEcCHHHHHhcCceEEEEcCCCcHHHHHHHhcCCCCCccccc
Q 024870 165 NNP--VL-QE-------DS-QWVAWVSSNAP----RESVTLTLPVINAAANVAIVASGIDVARPFLHVMMDQKPNRRLPA 229 (261)
Q Consensus 165 ~~~--~l-~~-------~~-~~~~~~~~~~p----~~riTlt~~~I~~A~~i~ll~~G~~Ka~~v~~~l~~~~~~~~~Pa 229 (261)
... .+ .+ .. ++|..-...++ .+.|+|++..|++++++++++.|.+|+++++.++.+..-
T Consensus 173 ~~~~~~L~~~~gaVGdi~g~rffD~~G~~v~~~~~~~~i~~~l~~l~~~~~~i~va~G~~K~~ai~~al~~~~~------ 246 (267)
T 3kv1_A 173 PKEFVEARLNDGIVGDIGGFDFFKLDGTDADTLMRGRVIGLEMEDLRQIPNVVAMASESRKALSIMGALRTGVI------ 246 (267)
T ss_dssp HHHHHHHHHTTCEEEEETTTEEEETTSCBCCCGGGGGBCBCCHHHHHTSSEEEEECCCGGGHHHHHHHHHTSCC------
T ss_pred HHHHHHHHHhcCCEEEEcchHhhcCCCCEeccccccceeecCHHHHcCCCcEEEEecChHHHHHHHHHHhcCCC------
Confidence 110 11 11 11 22321111122 357999999999999999999999999999999998421
Q ss_pred ccccccCCeEEEEecHHHHhcc
Q 024870 230 QLVSPKDGKLVWFADASAASFF 251 (261)
Q Consensus 230 s~l~~~~~~v~~~~D~~Aa~~l 251 (261)
-++++|+.+|..|
T Consensus 247 ---------~~LITDe~tA~~l 259 (267)
T 3kv1_A 247 ---------DVLATSVSCAMAL 259 (267)
T ss_dssp ---------SEEEEEHHHHHHH
T ss_pred ---------CEEEeCHHHHHHH
Confidence 2458999988875
No 25
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=69.97 E-value=4.9 Score=32.76 Aligned_cols=83 Identities=7% Similarity=-0.005 Sum_probs=46.6
Q ss_pred HHHhcCcEEEEEcCCC-cHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCchhHHHHHHHHhcCCCCCCCCcEEcCC
Q 024870 32 AIRERGSFSLVLSGGD-MPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPDSFYRQAQEAFISKVPILPAHVIPVS 110 (261)
Q Consensus 32 ~i~~~~~~~l~lsGG~-tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~~~~~ll~~~~ip~~~i~~~~ 110 (261)
.+.+...+.|+|+||. |-..+++.|.-..-+. -...|.+++.+.+| +.-..+++ ++.+.--|.++....+.
T Consensus 93 ~~~~~sda~IvlPGG~GTl~El~e~lt~~q~g~-~~kPvvll~~~g~~------~~l~~~l~-~~~~~Gfi~~~~~~~~~ 164 (191)
T 1t35_A 93 KMSELADGFISMPGGFGTYEELFEVLCWAQIGI-HQKPIGLYNVNGYF------EPMMKMVK-YSIQEGFSNESHLKLIH 164 (191)
T ss_dssp HHHHHCSEEEECSCCHHHHHHHHHHHHTTSCSS-CCCCEEEECGGGTT------HHHHHHHH-HHHHTTSSCTTHHHHEE
T ss_pred HHHHHCCEEEEeCCCccHHHHHHHHHHHHHhCC-CCCCEEEecCCccc------chHHHHHH-HHHHCCCCCHHHcCeEE
Confidence 3456688999999994 6677888774321112 23678888888887 33344443 33333223333322222
Q ss_pred CCCCHHHHHHHH
Q 024870 111 HGVPGESAANNY 122 (261)
Q Consensus 111 ~~~~~~~~a~~y 122 (261)
-..++++..+..
T Consensus 165 ~~~~~~e~~~~l 176 (191)
T 1t35_A 165 SSSRPDELIEQM 176 (191)
T ss_dssp EESSHHHHHHHH
T ss_pred EeCCHHHHHHHH
Confidence 234676655443
No 26
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=50.31 E-value=14 Score=31.65 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcC---cEEEEEcCC
Q 024870 13 SCEELDSCLADYVYQISEAAIRERG---SFSLVLSGG 46 (261)
Q Consensus 13 ~~~~l~~~~A~~i~~~i~~~i~~~~---~~~l~lsGG 46 (261)
|.++..+. +...|++.+++.+ .++|+||||
T Consensus 18 ~~~~~i~~----~~~~L~~~l~~~g~~~~vvvglSGG 50 (275)
T 1wxi_A 18 NAEEEIRR----SVDFLKSYLQTYPFIKSLVLGISGG 50 (275)
T ss_dssp CHHHHHHH----HHHHHHHHHHHSTTCCEEEEECCSS
T ss_pred CHHHHHHH----HHHHHHHHHHHcCCCCCEEEECcCc
Confidence 44544444 4455567776656 899999999
No 27
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=42.81 E-value=11 Score=31.36 Aligned_cols=43 Identities=9% Similarity=0.085 Sum_probs=30.7
Q ss_pred HHhcCcEEEEEcCCC-cHHHHHHhhC--CCCCCCCCCCcEEEEEecccc
Q 024870 33 IRERGSFSLVLSGGD-MPNRLGKLTR--PPFLRTVDWSKWHVFWAEENV 78 (261)
Q Consensus 33 i~~~~~~~l~lsGG~-tp~~l~~~L~--~~~~~~i~w~~v~~f~~DEr~ 78 (261)
+.+...+.|+|+||. |-..+++.|. +. .+-..-|.+++.+.+|
T Consensus 102 ~~~~sda~I~lpGG~GTLdElfE~lt~~ql---g~~~kPvvll~~~gfw 147 (216)
T 1ydh_A 102 MAQEAEAFIALPGGYGTMEELLEMITWSQL---GIHKKTVGLLNVDGYY 147 (216)
T ss_dssp HHHHCSEEEECSCSHHHHHHHHHHHHHHHH---TSCCCEEEEECGGGTT
T ss_pred HHHhCCEEEEeCCCccHHHHHHHHHHHHHh---cccCCCEEEecCCccc
Confidence 345688999999995 6677887653 22 2345678888888887
No 28
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=42.58 E-value=12 Score=30.69 Aligned_cols=78 Identities=9% Similarity=-0.051 Sum_probs=46.3
Q ss_pred HhcCcEEEEEcCCC-cHHHHHHhhC--CCCCCCCCCCcEEEEEecccccCCCCchhHHHHHHHHhcCCCCCCCCcEEcCC
Q 024870 34 RERGSFSLVLSGGD-MPNRLGKLTR--PPFLRTVDWSKWHVFWAEENVVPKRHPDSFYRQAQEAFISKVPILPAHVIPVS 110 (261)
Q Consensus 34 ~~~~~~~l~lsGG~-tp~~l~~~L~--~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~~~~~ll~~~~ip~~~i~~~~ 110 (261)
-+...+.|+|+||. |-..+++.|. +. .+.-+.|.+++.+.+| +.-..+++ ++.+.--|.+++...+.
T Consensus 115 ~~~sda~IalPGG~GTldEl~e~lt~~ql---g~~~kPvvlln~~gfw------~~l~~~l~-~~~~~Gfi~~~~~~~i~ 184 (199)
T 3qua_A 115 EHRSDAFIALPGGIGTLEEFFEAWTAGYL---GMHDKPLILLDPFGHY------DGLLTWLR-GLVPTGYVSQRAMDSLV 184 (199)
T ss_dssp HHHCSEEEECSCCHHHHHHHHHHHHHHHT---TSCCCCEEEECTTSTT------HHHHHHHH-HTTTTTSSCHHHHHTSE
T ss_pred HHhcCccEEeCCCccHHHHHHHHHHHHHh---ccCCCCEEEEcCCccc------hHHHHHHH-HHHHCCCCCHHHCCeEE
Confidence 45688999999994 6677887664 22 1223568888888887 44556664 44443334444332222
Q ss_pred CCCCHHHHHHH
Q 024870 111 HGVPGESAANN 121 (261)
Q Consensus 111 ~~~~~~~~a~~ 121 (261)
-..++++..+.
T Consensus 185 ~~d~~~e~~~~ 195 (199)
T 3qua_A 185 VVDNVEAALEA 195 (199)
T ss_dssp EESSHHHHHHH
T ss_pred EeCCHHHHHHH
Confidence 23467665543
No 29
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=42.14 E-value=21 Score=29.98 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhc--CcEEEEEcCCC
Q 024870 13 SCEELDSCLADYVYQISEAAIRER--GSFSLVLSGGD 47 (261)
Q Consensus 13 ~~~~l~~~~A~~i~~~i~~~i~~~--~~~~l~lsGG~ 47 (261)
+.++..+.+.+.|. +.+++. +.+.++||||-
T Consensus 8 ~~~~~~~~l~~~l~----~~v~~~~~~~vvv~lSGGi 40 (249)
T 3fiu_A 8 SPKEYSQKLVNWLS----DSCMNYPAEGFVIGLSGGI 40 (249)
T ss_dssp CHHHHHHHHHHHHH----HHHHTTTCSEEEEECCSSH
T ss_pred CHHHHHHHHHHHHH----HHHHHhCCCCEEEEecCcH
Confidence 66666665555555 444443 56999999994
No 30
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=42.08 E-value=31 Score=29.91 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCchhHHHHHHHHhcCCCCCC
Q 024870 24 YVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPDSFYRQAQEAFISKVPIL 102 (261)
Q Consensus 24 ~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~~~~~ll~~~~ip 102 (261)
.+.+.+++.+. .+++.++||||.-=..+..++.+. +. .+++.+++|....+. .....+++.+-+.++++
T Consensus 9 ~~~~~ir~~v~-~~kvlvalSGGvDSsvla~ll~~~----~g-~~v~av~vd~g~~~~----~e~~~~~~~~a~~lgi~ 77 (308)
T 2dpl_A 9 EKVREIRETVG-DSKAIIALSGGVDSSTAAVLAHKA----IG-DRLHAVFVNTGFLRK----GEPEFVVKTFRDEFGMN 77 (308)
T ss_dssp HHHHHHHHHHT-TSCEEEECCSSHHHHHHHHHHHHH----HG-GGEEEEEEECSCCCT----THHHHHHHHHTTTTCCE
T ss_pred HHHHHHHHHhC-CCCEEEEEeChHHHHHHHHHHHHh----hC-CCEEEEEEcCCCCCh----HHHHHHHHHHHHHcCCc
Confidence 34445555554 578999999995333333333321 12 368888888765432 23445666555567763
No 31
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=41.23 E-value=21 Score=30.40 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhc--CcEEEEEcCC
Q 024870 13 SCEELDSCLADYVYQISEAAIRER--GSFSLVLSGG 46 (261)
Q Consensus 13 ~~~~l~~~~A~~i~~~i~~~i~~~--~~~~l~lsGG 46 (261)
+.++..+.+.. .|++.+++. +.+.|+||||
T Consensus 17 ~~~~~i~~~~~----~L~d~v~~~g~~~vvvgLSGG 48 (271)
T 1kqp_A 17 DPKQEIEDRVN----FLKQYVKKTGAKGFVLGISGG 48 (271)
T ss_dssp CHHHHHHHHHH----HHHHHHHHHTCCEEEEECCSS
T ss_pred CHHHHHHHHHH----HHHHHHHHcCCCCEEEECCCC
Confidence 45555554444 444555443 6799999999
No 32
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=40.48 E-value=23 Score=28.57 Aligned_cols=66 Identities=17% Similarity=0.084 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcC-cEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCchhHHHHHHHHhcCCCCCC
Q 024870 26 YQISEAAIRERG-SFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPDSFYRQAQEAFISKVPIL 102 (261)
Q Consensus 26 ~~~i~~~i~~~~-~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~~~~~ll~~~~ip 102 (261)
.+.++.++++.+ ++.|++|||.-=..+..+|.+. . .++.++++|.-+-+ + ....++++ +-+.+++|
T Consensus 33 ~~~l~~~~~~~~~~v~Va~SGGkDS~vLL~ll~~~---~---~~v~~v~vd~g~~~---~-e~~~~v~~-~~~~~gi~ 99 (215)
T 1sur_A 33 EGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQI---R---PDIPVILTDTGYLF---P-ETYRFIDE-LTDKLKLN 99 (215)
T ss_dssp HHHHHHHHHHCCSEEEEECCCCTTHHHHHHHHHHH---S---TTCEEEEEECSCBC---H-HHHHHHHH-HHHHTTCE
T ss_pred HHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHh---C---CCCeEEEeeCCCCC---H-HHHHHHHH-HHHHhCCc
Confidence 445667777765 8999999997766677766543 1 35778888875422 2 23444443 33445653
No 33
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=39.50 E-value=31 Score=29.10 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEeccc
Q 024870 13 SCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEEN 77 (261)
Q Consensus 13 ~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr 77 (261)
+.+++.+.+.+.|.+.++. ...+++.++||||--=..+..++.+. .. .+|+.+.+|-.
T Consensus 4 ~~~~~~~~l~~~l~~~v~~--~~~~~vvv~lSGGiDSsv~~~l~~~~----~~-~~v~av~~~~~ 61 (268)
T 1xng_A 4 DYQKLIVYLCDFLEKEVQK--RGFKKVVYGLSGGLDSAVVGVLCQKV----FK-ENAHALLMPSS 61 (268)
T ss_dssp CHHHHHHHHHHHHHHHHHH--TTCCCEEEECCSSHHHHHHHHHHHHH----HG-GGEEEEECCCS
T ss_pred CHHHHHHHHHHHHHHHHHH--hCCCCEEEEccCcHHHHHHHHHHHHh----CC-CCEEEEEeCCC
Confidence 3455666555555544332 13467999999994322222233221 11 46888888854
No 34
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=39.00 E-value=31 Score=29.84 Aligned_cols=45 Identities=9% Similarity=-0.021 Sum_probs=28.1
Q ss_pred HHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccc
Q 024870 33 IRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENV 78 (261)
Q Consensus 33 i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~ 78 (261)
+...+++.+++|||.-=..+..+|.+.. ....++++..+.+|.-.
T Consensus 21 ~~~~~~vlva~SGG~DS~~Ll~ll~~~~-~~~g~~~v~av~vd~g~ 65 (317)
T 1wy5_A 21 FSGERRVLIAFSGGVDSVVLTDVLLKLK-NYFSLKEVALAHFNHML 65 (317)
T ss_dssp CSSCCEEEEECCSSHHHHHHHHHHHHST-TTTTCSEEEEEEEECCS
T ss_pred CCCCCEEEEEecchHHHHHHHHHHHHHH-HHcCCCEEEEEEEECCC
Confidence 3455789999999954444444443211 13456668999998754
No 35
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=38.31 E-value=51 Score=26.66 Aligned_cols=95 Identities=17% Similarity=0.122 Sum_probs=50.1
Q ss_pred eEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCC------------------cHHHHHHhhCCCCCCCCCCCc
Q 024870 7 ELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGD------------------MPNRLGKLTRPPFLRTVDWSK 68 (261)
Q Consensus 7 ~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~------------------tp~~l~~~L~~~~~~~i~w~~ 68 (261)
-+++.++. +++....+.+. +.....+.-...+.||. ||..+.+.+... .+++++
T Consensus 105 ~lil~Pt~-~L~~Q~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~---~~~~~~ 176 (242)
T 3fe2_A 105 CLVLAPTR-ELAQQVQQVAA----EYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG---KTNLRR 176 (242)
T ss_dssp EEEECSSH-HHHHHHHHHHH----HHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHT---SCCCTT
T ss_pred EEEEeCcH-HHHHHHHHHHH----HHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC---CCCccc
Confidence 46677777 44444544444 33344454455566664 444555544332 467889
Q ss_pred EEEEEecccc-cCCCCchhHHHHHHHHhcCCCCCCCCcEEcCCCCCC
Q 024870 69 WHVFWAEENV-VPKRHPDSFYRQAQEAFISKVPILPAHVIPVSHGVP 114 (261)
Q Consensus 69 v~~f~~DEr~-vp~~~~~Sn~~~~~~~ll~~~~ip~~~i~~~~~~~~ 114 (261)
+.++-+||-- +... ++...++ .+++.++ +..++..+-.+.+
T Consensus 177 ~~~lViDEah~l~~~---~~~~~~~-~i~~~~~-~~~q~~~~SAT~~ 218 (242)
T 3fe2_A 177 TTYLVLDEADRMLDM---GFEPQIR-KIVDQIR-PDRQTLMWSATWP 218 (242)
T ss_dssp CCEEEETTHHHHHHT---TCHHHHH-HHHTTSC-SSCEEEEEESCCC
T ss_pred ccEEEEeCHHHHhhh---CcHHHHH-HHHHhCC-ccceEEEEEeecC
Confidence 9999999943 1111 1233333 3445543 2345655554443
No 36
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=37.95 E-value=16 Score=30.23 Aligned_cols=83 Identities=10% Similarity=-0.032 Sum_probs=44.5
Q ss_pred HHHhcCcEEEEEcCCC-cHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCchhHHHHHHHHhcCCCCCCCCcEEcCC
Q 024870 32 AIRERGSFSLVLSGGD-MPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPDSFYRQAQEAFISKVPILPAHVIPVS 110 (261)
Q Consensus 32 ~i~~~~~~~l~lsGG~-tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~~~~~ll~~~~ip~~~i~~~~ 110 (261)
.+.....+.|+|+||. |-..+++.|.-...+.+....|.+++.+ +| +.-..++ +++.+.--|++++...+-
T Consensus 127 ~m~~~sda~IvlpGG~GTL~El~e~lt~~qlg~~~~kPvvll~~~-~w------~~l~~~l-~~~~~~Gfi~~~~~~~~~ 198 (217)
T 1wek_A 127 LFVRYAVGFVFLPGGFGTLDELSEVLVLLQTEKVHRFPVFLLDRG-YW------EGLVRWL-AFLRDQKAVGPEDLQLFR 198 (217)
T ss_dssp HHHHTEEEEEECSCCHHHHHHHHHHHHHHHTTSSCCCCEEEECHH-HH------HHHHHHH-HHHHHTTSSCTTGGGGSE
T ss_pred HHHHhCCEEEEeCCCCcHHHHHHHHHHHHhhCCCCCCCEEEeCcc-cc------hhHHHHH-HHHHHCCCCCHHHcCeEE
Confidence 3456788999999995 6677777664211112344667777663 65 2233334 334332223344433333
Q ss_pred CCCCHHHHHHHH
Q 024870 111 HGVPGESAANNY 122 (261)
Q Consensus 111 ~~~~~~~~a~~y 122 (261)
-..++++..+..
T Consensus 199 ~~~~~~e~~~~l 210 (217)
T 1wek_A 199 LTDEPEEVVQAL 210 (217)
T ss_dssp EESCHHHHHHHH
T ss_pred EeCCHHHHHHHH
Confidence 334777665543
No 37
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=37.92 E-value=22 Score=29.95 Aligned_cols=52 Identities=6% Similarity=-0.199 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEeccccc
Q 024870 25 VYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVV 79 (261)
Q Consensus 25 i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~v 79 (261)
-.+.++.+++.-+++.+++|||..=..+..++.+... . =.++.++++|.-+.
T Consensus 30 ~~~~l~~a~~~~~~v~va~SGGkDS~vLL~ll~~~~~-~--~~~i~vv~iDtg~~ 81 (261)
T 2oq2_A 30 PQEIIAWSIVTFPHLFQTTAFGLTGLVTIDMLSKLSE-K--YYMPELLFIDTLHH 81 (261)
T ss_dssp HHHHHHHHHHHCSSEEEECCCCHHHHHHHHHHHHHTT-T--SCCCEEEEECCSCB
T ss_pred HHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCc-c--CCCeeEEEecCCCC
Confidence 3556677788888999999999766666666654311 1 13578888988653
No 38
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=35.72 E-value=14 Score=30.11 Aligned_cols=42 Identities=14% Similarity=0.026 Sum_probs=30.0
Q ss_pred HhcCcEEEEEcCCC-cHHHHHHhhC--CCCCCCCCCCcEEEEEecccc
Q 024870 34 RERGSFSLVLSGGD-MPNRLGKLTR--PPFLRTVDWSKWHVFWAEENV 78 (261)
Q Consensus 34 ~~~~~~~l~lsGG~-tp~~l~~~L~--~~~~~~i~w~~v~~f~~DEr~ 78 (261)
-+...+.|+|+||. |-..+++.|. +. .+--+.|.+++.+.||
T Consensus 106 ~~~sda~IalPGG~GTLdElfe~lt~~ql---g~~~kPvvlln~~gfw 150 (189)
T 3sbx_A 106 EDRANAFITLPGGVGTLDELLDVWTEGYL---GMHDKSIVVLDPWGHF 150 (189)
T ss_dssp HHHCSEEEECSCCHHHHHHHHHHHHHHHT---TSCCCCEEEECTTCTT
T ss_pred HHHCCEEEEeCCCcchHHHHHHHHHHHHh---cccCCCEEEecCCccc
Confidence 35678999999994 6777888764 22 1223578888888887
No 39
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=34.71 E-value=31 Score=29.71 Aligned_cols=31 Identities=19% Similarity=0.142 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhc--CcEEEEEcCCC
Q 024870 13 SCEELDSCLADYVYQISEAAIRER--GSFSLVLSGGD 47 (261)
Q Consensus 13 ~~~~l~~~~A~~i~~~i~~~i~~~--~~~~l~lsGG~ 47 (261)
+.++..+...+.+. +.+++. +.++|+||||-
T Consensus 19 ~~~~~i~~~v~~L~----d~l~~~g~~~vvvglSGGv 51 (279)
T 3q4g_A 19 DPQFEIERRVAFIK----RKLTEARYKSLVLGISGGV 51 (279)
T ss_dssp CHHHHHHHHHHHHH----HHHHHHTCCEEEEECCSSH
T ss_pred CHHHHHHHHHHHHH----HHHHHcCCCCEEEEccCCH
Confidence 44555554444444 555544 58999999993
No 40
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=34.53 E-value=28 Score=23.58 Aligned_cols=37 Identities=8% Similarity=0.101 Sum_probs=30.5
Q ss_pred EEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCC
Q 024870 40 SLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRH 83 (261)
Q Consensus 40 ~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~ 83 (261)
.+-++.|.|...+.+.|. ++.+.+ ++.++.+.||++.
T Consensus 14 ~~ev~~g~Tv~dLL~~Lg------l~~~~V-vV~vNG~~v~~d~ 50 (74)
T 2l32_A 14 EVAVDDDGTYADLVRAVD------LSPHEV-TVLVDGRPVPEDQ 50 (74)
T ss_dssp EEECSTTCSHHHHHHTTC------CCSSCC-CEECCCCCCCTTS
T ss_pred eEEcCCCCcHHHHHHHcC------CCcceE-EEEECCEECCHHH
Confidence 467888988887777765 777888 7999999999998
No 41
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=33.41 E-value=42 Score=28.12 Aligned_cols=57 Identities=12% Similarity=0.267 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHh--cCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccc
Q 024870 13 SCEELDSCLADYVYQISEAAIRE--RGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENV 78 (261)
Q Consensus 13 ~~~~l~~~~A~~i~~~i~~~i~~--~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~ 78 (261)
+.+++.+.+...|. +.+++ .+.+.++||||---..+..++.+. +. .+++.+.+|-..
T Consensus 5 ~~~~~~~~l~~~l~----d~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~----~g-~~v~av~~~~~~ 63 (249)
T 3p52_A 5 DWQKITEKMCDFIQ----EKVKNSQSQGVVLGLSGGIDSALVATLCKRA----LK-ENVFALLMPTQI 63 (249)
T ss_dssp CHHHHHHHHHHHHH----HHHHTSSCSEEEEECCSSHHHHHHHHHHHHH----HT-TSEEEEECCSCC
T ss_pred CHHHHHHHHHHHHH----HHHHHhCCCCEEEEcCCCHHHHHHHHHHHHH----cC-CcEEEEEecCCC
Confidence 55666665555555 55555 357999999994222222233221 12 467888887643
No 42
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=33.24 E-value=1.8e+02 Score=27.08 Aligned_cols=67 Identities=9% Similarity=0.090 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCchhHHHHHHHHhcCCCCCC
Q 024870 26 YQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPDSFYRQAQEAFISKVPIL 102 (261)
Q Consensus 26 ~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~~~~~ll~~~~ip 102 (261)
.+.+++.+. .+++.++||||.-=..+..+|.+. +. .+++.+.+|....+.+ -...+.+.+-+.++++
T Consensus 221 i~~i~~~v~-~~kvlvalSGGvDSsvla~ll~~~----~G-~~v~av~vd~g~~~~~----e~~~~~~~~a~~lgi~ 287 (527)
T 3tqi_A 221 IRDIQEKVG-KEQVIVGLSGGVDSAVTATLVHKA----IG-DQLVCVLVDTGLLRLN----EVDEVLNVFQKHLGAK 287 (527)
T ss_dssp HHHHHHHHT-TSCEEEECTTTHHHHHHHHHHHHH----HG-GGEEEEEECCSCSCTT----HHHHHHHHHTTSSCCE
T ss_pred HHHHHHhcC-CCeEEEEEecCcCHHHHHHHHHHH----hC-CeEEEEEeccCCCChh----HHHHHHHHHHHHcCCc
Confidence 344445444 388999999994322233333321 11 3688888888654322 2234445566777763
No 43
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=31.98 E-value=51 Score=28.42 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhc--CcEEEEEcCCC
Q 024870 13 SCEELDSCLADYVYQISEAAIRER--GSFSLVLSGGD 47 (261)
Q Consensus 13 ~~~~l~~~~A~~i~~~i~~~i~~~--~~~~l~lsGG~ 47 (261)
|.++..+...+.+. +.+++. +.++|+||||-
T Consensus 25 ~~~~~i~~~v~~L~----d~l~~~g~~~vvvglSGGi 57 (285)
T 3dpi_A 25 DARDEAERRIGFVA----DYLRTAGLRACVLGISGGI 57 (285)
T ss_dssp CHHHHHHHHHHHHH----HHHHHHTCCEEEEECCSSH
T ss_pred CHHHHHHHHHHHHH----HHHHHcCCCcEEEEccCCh
Confidence 45555555545554 555544 57999999993
No 44
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=28.75 E-value=49 Score=27.55 Aligned_cols=54 Identities=9% Similarity=0.078 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEeccc
Q 024870 14 CEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEEN 77 (261)
Q Consensus 14 ~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr 77 (261)
.+++.+.+.+.|. +. ..+++.++||||--=..+..++.+. ..-.+|+.+.+|-.
T Consensus 6 ~~~~~~~l~~~i~----~~--~~~~vvv~lSGGiDSs~~~~l~~~~----~g~~~v~av~~~~~ 59 (257)
T 2e18_A 6 YDKVIERILEFIR----EK--GNNGVVIGISGGVDSATVAYLATKA----LGKEKVLGLIMPYF 59 (257)
T ss_dssp HHHHHHHHHHHHH----HH--CTTCEEEECCSSHHHHHHHHHHHHH----HCGGGEEEEECCSS
T ss_pred HHHHHHHHHHHHH----Hh--CCCcEEEEecCCHHHHHHHHHHHHh----cCCCcEEEEEeCCC
Confidence 4455544444444 33 4578999999994322222223221 11136888888865
No 45
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=28.67 E-value=29 Score=24.30 Aligned_cols=23 Identities=13% Similarity=0.328 Sum_probs=18.0
Q ss_pred CCcccEEEecCCCCCcccccCCCCCC
Q 024870 143 CPQFDLVLLTLGTRCDVASIYPNNPV 168 (261)
Q Consensus 143 ~~~~Dl~lLG~G~DGH~aslfP~~~~ 168 (261)
.|++.+=+ -+|||.+..|||...
T Consensus 37 ~PPY~VRw---~ddGHe~lv~PGPDa 59 (83)
T 2a7y_A 37 SPPYVVRW---LVNGHETTVYPGSDA 59 (83)
T ss_dssp CSCEEEEE---TTTTEEEEECCCSSC
T ss_pred CCCEEEEe---cCCCcEEEEecCCCe
Confidence 46677766 389999999999753
No 46
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genom structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli}
Probab=28.28 E-value=1.7e+02 Score=24.72 Aligned_cols=45 Identities=4% Similarity=-0.220 Sum_probs=31.1
Q ss_pred CchhHHHHHHHHhcCCCCCCCCcEEcCCCCCCHHHHHHHHHHHHH
Q 024870 83 HPDSFYRQAQEAFISKVPILPAHVIPVSHGVPGESAANNYEFSIR 127 (261)
Q Consensus 83 ~~~Sn~~~~~~~ll~~~~ip~~~i~~~~~~~~~~~~a~~y~~~i~ 127 (261)
+..|-...|++.+.+..++|++.|+.=+.+.+-.+.+..-.+.++
T Consensus 94 ~~~sEA~~m~~~l~~~~GVp~~~IllE~~S~nT~ENa~~s~~ll~ 138 (266)
T 3ca8_A 94 TGRAEATILADIAHQFWHIPHEKIWIEDQSTNCGENARFSIALLN 138 (266)
T ss_dssp TTSCHHHHHHHHHHHTTCCCGGGEEEECCCCSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCHHHEEeCCCCccHHHHHHHHHHHHH
Confidence 345777888888887668999998766666565566644444554
No 47
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=27.47 E-value=44 Score=27.88 Aligned_cols=47 Identities=13% Similarity=-0.048 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcC-cEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccc
Q 024870 26 YQISEAAIRERG-SFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENV 78 (261)
Q Consensus 26 ~~~i~~~i~~~~-~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~ 78 (261)
.+.++.+++.-+ ++.|++|||..=..+..++.+. . .++.++++|--+
T Consensus 34 ~~~l~~a~~~~~~~v~va~SGG~DS~vLL~ll~~~---~---~~v~vv~idtg~ 81 (252)
T 2o8v_A 34 EGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQI---R---PDIPVILTDTGY 81 (252)
T ss_dssp HHHHHHHHTTSCSCEEEECCCSTTHHHHHHHHHHH---S---TTCEEEECCCSC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHh---C---CCCeEEEecCCC
Confidence 345556666655 8999999997766677776653 1 357888898754
No 48
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=24.41 E-value=40 Score=27.78 Aligned_cols=44 Identities=9% Similarity=0.058 Sum_probs=30.7
Q ss_pred HHHhcCcEEEEEcCCC-cHHHHHHhhC--CCCCCCCCCCcEEEEEecccc
Q 024870 32 AIRERGSFSLVLSGGD-MPNRLGKLTR--PPFLRTVDWSKWHVFWAEENV 78 (261)
Q Consensus 32 ~i~~~~~~~l~lsGG~-tp~~l~~~L~--~~~~~~i~w~~v~~f~~DEr~ 78 (261)
.+.....+.|+|+||. |-..+++.|. +. .+--+.|.+++.+.||
T Consensus 105 ~~~~~sda~VvlpGG~GTLdElfE~lt~~ql---g~~~kPvvll~~~g~w 151 (215)
T 2a33_A 105 EMAKHSDAFIALPGGYGTLEELLEVITWAQL---GIHDKPVGLLNVDGYY 151 (215)
T ss_dssp HHHHTCSEEEECSCCHHHHHHHHHHHHHHHT---TSCCCCEEEECGGGTT
T ss_pred HHHHhCCEEEEeCCCCchHHHHHHHHHHHHh---CCCCCCeEEecCcchh
Confidence 3456788999999995 6666777654 22 1223568888888888
No 49
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=22.51 E-value=2.1e+02 Score=26.03 Aligned_cols=151 Identities=15% Similarity=0.125 Sum_probs=81.0
Q ss_pred CCCCCCcEEEEEecccccCCC---CchhHHHHHHHHhcCCCCCCCCcEEcCCC--CCCHHHHHHHHHHHHHHhhhccCCC
Q 024870 62 RTVDWSKWHVFWAEENVVPKR---HPDSFYRQAQEAFISKVPILPAHVIPVSH--GVPGESAANNYEFSIRQQVRKRTVP 136 (261)
Q Consensus 62 ~~i~w~~v~~f~~DEr~vp~~---~~~Sn~~~~~~~ll~~~~ip~~~i~~~~~--~~~~~~~a~~y~~~i~~~~~~~~~~ 136 (261)
+++.|+++.+.+-+||.+... .+...---+-+.++ ++...+...+-+ ...-..-+......+.+
T Consensus 132 ~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~---pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~-------- 200 (422)
T 3ice_A 132 NKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLAS---PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY-------- 200 (422)
T ss_dssp TSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHS---CCBTTCEEEEECCSSSSHHHHHHHHHHHHHH--------
T ss_pred CCceeccccccCCCCccccccCCCCcccccceeeeeee---eecCCcEEEEecCCCCChhHHHHHHHHHHhh--------
Confidence 468888888888888875542 23333333334333 344555555422 22223333334444443
Q ss_pred CCCCCCCCcccEEEecCCCCCcccccCCCCCCCCCCCceEEEecCCCCCCeeEcCHHHH-------HhcCceEEEEcC-C
Q 024870 137 VSPSSDCPQFDLVLLTLGTRCDVASIYPNNPVLQEDSQWVAWVSSNAPRESVTLTLPVI-------NAAANVAIVASG-I 208 (261)
Q Consensus 137 ~~~~~~~~~~Dl~lLG~G~DGH~aslfP~~~~l~~~~~~~~~~~~~~p~~riTlt~~~I-------~~A~~i~ll~~G-~ 208 (261)
+.+.+++++++||+.+....-|-.+- ....|....+.+|..|+....-.+ .+-++|+++..- .
T Consensus 201 -----~~~~v~~I~~lIGER~~Ev~~~~~~~----~~~vV~atadep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslT 271 (422)
T 3ice_A 201 -----NHPDCVLMVLLIDERPEEVTEMQRLV----KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSIT 271 (422)
T ss_dssp -----HCTTSEEEEEEESSCHHHHHHHHTTC----SSEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHH
T ss_pred -----cCCCeeEEEEEecCChHHHHHHHHHh----CeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCch
Confidence 24578999999999988776553221 111222222666666665443333 245667777666 3
Q ss_pred CcHHHHHHHhc--CCCCCcccccccc
Q 024870 209 DVARPFLHVMM--DQKPNRRLPAQLV 232 (261)
Q Consensus 209 ~Ka~~v~~~l~--~~~~~~~~Pas~l 232 (261)
+-+.+.+++-. +++...-||.+.+
T Consensus 272 R~A~A~revs~~~Ge~ps~Gyp~~~~ 297 (422)
T 3ice_A 272 RLARAYNTVVPASGKVLTGGVDANAL 297 (422)
T ss_dssp HHHHHHHHHSCCSSCBCSSSCBHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCCcCHHHH
Confidence 44566666642 3332244665543
No 50
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=22.35 E-value=1.1e+02 Score=28.61 Aligned_cols=68 Identities=12% Similarity=0.102 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCchhHHHHHHHHhcCCCCCC
Q 024870 25 VYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPDSFYRQAQEAFISKVPIL 102 (261)
Q Consensus 25 i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~~~~~ll~~~~ip 102 (261)
+.+.|++.+. ++++.++||||--=..+..++.+. +. .+++.+.+|-...+.+ -...+++.+-+.++++
T Consensus 217 ~~~~ir~~v~-~~~vvvalSGGvDSsv~a~ll~~a----~G-~~v~av~v~~g~~~~~----e~~~~~~~la~~lgi~ 284 (525)
T 1gpm_A 217 AVARIREQVG-DDKVILGLSGGVDSSVTAMLLHRA----IG-KNLTCVFVDNGLLRLN----EAEQVLDMFGDHFGLN 284 (525)
T ss_dssp HHHHHHHHHT-TCEEEEECCSSHHHHHHHHHHHHH----HG-GGEEEEEEECSCSCTT----HHHHHHHHHTTTTCCC
T ss_pred hhhhhhhhhc-ccceEEEecCCCCHHHHHHHHHHH----hC-CCEEEEEEeCCCCCch----HHHHHHHHHHHHhCCc
Confidence 3344445553 378999999994222222233321 12 5788888887554322 2334555566667763
No 51
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=22.26 E-value=1.3e+02 Score=26.05 Aligned_cols=64 Identities=17% Similarity=0.117 Sum_probs=36.7
Q ss_pred eEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCC------------------cHHHHHHhhCCCCCCCCCCCc
Q 024870 7 ELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGD------------------MPNRLGKLTRPPFLRTVDWSK 68 (261)
Q Consensus 7 ~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~------------------tp~~l~~~L~~~~~~~i~w~~ 68 (261)
-+++.++. +++....+.+. +.....+.-...+.||. ||..+.+.+... .+++++
T Consensus 104 ~lil~Pt~-~L~~q~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~---~~~~~~ 175 (417)
T 2i4i_A 104 SLVLAPTR-ELAVQIYEEAR----KFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERG---KIGLDF 175 (417)
T ss_dssp EEEECSSH-HHHHHHHHHHH----HHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT---SBCCTT
T ss_pred EEEECCcH-HHHHHHHHHHH----HHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcC---CcChhh
Confidence 46667776 45554444443 33222333344455664 455555555432 567889
Q ss_pred EEEEEecccc
Q 024870 69 WHVFWAEENV 78 (261)
Q Consensus 69 v~~f~~DEr~ 78 (261)
+.++-+||-.
T Consensus 176 ~~~iViDEah 185 (417)
T 2i4i_A 176 CKYLVLDEAD 185 (417)
T ss_dssp CCEEEESSHH
T ss_pred CcEEEEEChh
Confidence 9999999954
No 52
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=21.97 E-value=1.2e+02 Score=23.74 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=17.1
Q ss_pred cHHHHHHhhCCCCCCCCCCCcEEEEEeccc
Q 024870 48 MPNRLGKLTRPPFLRTVDWSKWHVFWAEEN 77 (261)
Q Consensus 48 tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr 77 (261)
||..+.+.+... .++.+++.++-+||-
T Consensus 133 Tp~~l~~~l~~~---~~~~~~~~~lViDEa 159 (219)
T 1q0u_A 133 TPGRINDFIREQ---ALDVHTAHILVVDEA 159 (219)
T ss_dssp CHHHHHHHHHTT---CCCGGGCCEEEECSH
T ss_pred CHHHHHHHHHcC---CCCcCcceEEEEcCc
Confidence 455555554432 456778888888884
No 53
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=21.93 E-value=1.9e+02 Score=26.62 Aligned_cols=75 Identities=17% Similarity=0.141 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHHHHHHhhCCCCCCCCCCCcEEEEEecccccCCCCchhHHHHH
Q 024870 12 DSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDMPNRLGKLTRPPFLRTVDWSKWHVFWAEENVVPKRHPDSFYRQA 91 (261)
Q Consensus 12 ~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~~ 91 (261)
.+.++..+.+-+.+.+.++..+....++.+.||||--=..+-.++.+. . .+++.|.++= +..++....+.+
T Consensus 214 ~~~~~~~~~l~~~L~~aV~~rl~sd~~v~v~LSGGlDSs~vaala~~~----~--~~~~~~t~~~---~~~~E~~~A~~v 284 (503)
T 1q15_A 214 LPREPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLDSSLVTALASRH----F--KKLNTYSIGT---ELSNEFEFSQQV 284 (503)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHGGGCSEEEEECCSSHHHHHHHHHHTTT----C--SEEEEEEEEE---TTBCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCCHHHHHHHHHHHHh----C--CCcEEEEEeC---CCccHHHHHHHH
Confidence 366777777777777777776667788999999995444444455543 1 3566666542 122333444444
Q ss_pred HHHh
Q 024870 92 QEAF 95 (261)
Q Consensus 92 ~~~l 95 (261)
-+++
T Consensus 285 A~~l 288 (503)
T 1q15_A 285 ADAL 288 (503)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 54
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=20.92 E-value=78 Score=29.95 Aligned_cols=55 Identities=18% Similarity=0.009 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc--CcEEEEEcCCC-cHHHHHHhhCCCCCCCCCCCcEEEEEeccc
Q 024870 14 CEELDSCLADYVYQISEAAIRER--GSFSLVLSGGD-MPNRLGKLTRPPFLRTVDWSKWHVFWAEEN 77 (261)
Q Consensus 14 ~~~l~~~~A~~i~~~i~~~i~~~--~~~~l~lsGG~-tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr 77 (261)
.+++.+.+.. .|++.+++. +.+.|+||||- |....+ ++.+. +.-.+|+.+.++-.
T Consensus 306 ~~~~~~~~~~----~l~~~~~~~g~~~vvvglSGGvDSsv~a~-la~~a----lG~~~v~~v~m~~~ 363 (590)
T 3n05_A 306 DEEVYSALVV----GLRAYVAKNGFRSVLIGLSGGIDSALVAA-IACDA----LGAQNVYGVSMPSK 363 (590)
T ss_dssp HHHHHHHHHH----HHHHHHHTTTCCCEEEECCSSHHHHHHHH-HHHHH----HCGGGEEEEECCCS
T ss_pred HHHHHHHHHH----HHHHHHHHhCCCcEEEEcCCCHHHHHHHH-HHHHH----hCcccEEEEEECCC
Confidence 4455554444 444555554 57999999993 222221 22211 11146787877743
No 55
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=20.91 E-value=45 Score=25.42 Aligned_cols=16 Identities=13% Similarity=0.200 Sum_probs=14.0
Q ss_pred CCcccEEEecCCCCCc
Q 024870 143 CPQFDLVLLTLGTRCD 158 (261)
Q Consensus 143 ~~~~Dl~lLG~G~DGH 158 (261)
.|.+|++++|.|..+.
T Consensus 65 ~p~pevliiGTG~~~~ 80 (135)
T 2fvt_A 65 ANAIDTLIVGTGADVW 80 (135)
T ss_dssp TTSCSEEEEECTTSCC
T ss_pred CCCCCEEEEcCCCCCC
Confidence 4678999999999887
No 56
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=20.83 E-value=1.6e+02 Score=23.70 Aligned_cols=65 Identities=18% Similarity=0.064 Sum_probs=35.5
Q ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCc------------------HHHHHHhhCCCCCCCCCCC
Q 024870 6 PELRLFDSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGDM------------------PNRLGKLTRPPFLRTVDWS 67 (261)
Q Consensus 6 ~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~t------------------p~~l~~~L~~~~~~~i~w~ 67 (261)
.-+++.++. +++....+.+. +.....+.-...+.||.. |..+.+.+... .++++
T Consensus 102 ~~lil~Pt~-~L~~q~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~---~~~~~ 173 (253)
T 1wrb_A 102 KCLILAPTR-ELAIQILSESQ----KFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN---KISLE 173 (253)
T ss_dssp SEEEECSSH-HHHHHHHHHHH----HHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT---SBCCT
T ss_pred eEEEEECCH-HHHHHHHHHHH----HHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC---CCChh
Confidence 346666766 44444444443 332233333455566653 34444444332 46778
Q ss_pred cEEEEEecccc
Q 024870 68 KWHVFWAEENV 78 (261)
Q Consensus 68 ~v~~f~~DEr~ 78 (261)
++.++-+||--
T Consensus 174 ~~~~lViDEah 184 (253)
T 1wrb_A 174 FCKYIVLDEAD 184 (253)
T ss_dssp TCCEEEEETHH
T ss_pred hCCEEEEeCHH
Confidence 89999999953
No 57
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=20.76 E-value=96 Score=27.06 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEcCCCcHH-HHHHhhCC
Q 024870 19 SCLADYVYQISEAAIRERGSFSLVLSGGDMPN-RLGKLTRP 58 (261)
Q Consensus 19 ~~~A~~i~~~i~~~i~~~~~~~l~lsGG~tp~-~l~~~L~~ 58 (261)
+.+++.+.+.++.+.++.+.-.|+|+||-.-. .+.+.|.+
T Consensus 231 ~~l~~~l~~~~~~a~~~~g~~~vvlsGGVa~N~~L~~~L~~ 271 (334)
T 3eno_A 231 ETAFAMLVEVLERALYVSGKDEILMAGGVALNRRLRDMVTN 271 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEESSGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHH
Confidence 44556666666666667788899999996543 34444443
No 58
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=20.72 E-value=1.3e+02 Score=23.99 Aligned_cols=27 Identities=15% Similarity=0.136 Sum_probs=19.0
Q ss_pred cHHHHHHhhCCCCCCCCCCCcEEEEEeccc
Q 024870 48 MPNRLGKLTRPPFLRTVDWSKWHVFWAEEN 77 (261)
Q Consensus 48 tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr 77 (261)
||..+++.+... .+..+++.++-+||-
T Consensus 156 Tp~~l~~~l~~~---~~~~~~~~~lViDEa 182 (237)
T 3bor_A 156 TPGRVFDMLNRR---YLSPKWIKMFVLDEA 182 (237)
T ss_dssp CHHHHHHHHHTT---SSCSTTCCEEEEESH
T ss_pred CHHHHHHHHHhC---CcCcccCcEEEECCc
Confidence 566666666543 456788899999994
No 59
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=20.44 E-value=70 Score=29.78 Aligned_cols=36 Identities=17% Similarity=0.079 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCC
Q 024870 12 DSCEELDSCLADYVYQISEAAIRERGSFSLVLSGGD 47 (261)
Q Consensus 12 ~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsGG~ 47 (261)
.+.++..+.+-+.+.+.++..+....++.+.||||-
T Consensus 217 ~~~~~~~~~l~~~L~~aV~~rl~sd~~vgv~LSGGl 252 (513)
T 1jgt_A 217 LPEGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGI 252 (513)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSCTTCCCEEECCSSH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCcH
Confidence 356777776666666665555545578899999994
No 60
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=20.24 E-value=1.5e+02 Score=23.21 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=18.9
Q ss_pred cHHHHHHhhCCCCCCCCCCCcEEEEEecccc
Q 024870 48 MPNRLGKLTRPPFLRTVDWSKWHVFWAEENV 78 (261)
Q Consensus 48 tp~~l~~~L~~~~~~~i~w~~v~~f~~DEr~ 78 (261)
||..+++.+... .+..+++.++-+||-.
T Consensus 138 Tp~~l~~~~~~~---~~~~~~~~~iViDEah 165 (224)
T 1qde_A 138 TPGRVFDNIQRR---RFRTDKIKMFILDEAD 165 (224)
T ss_dssp CHHHHHHHHHTT---SSCCTTCCEEEEETHH
T ss_pred CHHHHHHHHHhC---CcchhhCcEEEEcChh
Confidence 455555555443 4667889999999943
No 61
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=20.12 E-value=1.6e+02 Score=22.56 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=34.8
Q ss_pred eEEEeCCHHHHHHHHHHHHHHHHHHHHHhc-CcEEEEEcCCCc------------------HHHHHHhhCCCCCCCCCCC
Q 024870 7 ELRLFDSCEELDSCLADYVYQISEAAIRER-GSFSLVLSGGDM------------------PNRLGKLTRPPFLRTVDWS 67 (261)
Q Consensus 7 ~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~-~~~~l~lsGG~t------------------p~~l~~~L~~~~~~~i~w~ 67 (261)
-+++.++. +++....+.+. +..... +.-...+.||.. |..+.+.+... .+..+
T Consensus 74 ~lil~Pt~-~L~~q~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~---~~~~~ 145 (206)
T 1vec_A 74 AMVIVPTR-ELALQVSQICI----QVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG---VAKVD 145 (206)
T ss_dssp EEEECSCH-HHHHHHHHHHH----HHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT---CSCCT
T ss_pred EEEEeCcH-HHHHHHHHHHH----HHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcC---CcCcc
Confidence 45666765 44444444443 332333 233444556643 44444444332 45678
Q ss_pred cEEEEEecccc
Q 024870 68 KWHVFWAEENV 78 (261)
Q Consensus 68 ~v~~f~~DEr~ 78 (261)
++.++-+||-.
T Consensus 146 ~~~~lViDEah 156 (206)
T 1vec_A 146 HVQMIVLDEAD 156 (206)
T ss_dssp TCCEEEEETHH
T ss_pred cCCEEEEEChH
Confidence 89999999964
Done!