BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024871
(261 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A1S|A Chain A, Ornithine Carbamoyltransferase From Pyrococcus Furiosus
Length = 314
Score = 291 bits (745), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 137/263 (52%), Positives = 189/263 (71%), Gaps = 3/263 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++MIF KPS RTRVSFE + LGGHA+YL D+Q+ + E D ARVL RY D IMAR
Sbjct: 48 LAMIFQKPSTRTRVSFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMAR 107
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
V+ H+D+ DLAK+ATVPVINGL+D++HPCQ +AD +TI E G ++G KVVYVGDGNN+
Sbjct: 108 VYDHKDVEDLAKYATVPVINGLSDFSHPCQALADYMTIWEKKGTIKGVKVVYVGDGNNVA 167
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGIS---KIEITNDPKEVVQGADVVY 177
HS ++ + + V A P+G+EPD++ ++ A + E+ +DP + V+ ADV+Y
Sbjct: 168 HSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIY 227
Query: 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPY 237
+DVWASMGQ+ EA R++ F+ FQV++ L+K A P FMHCLPA RG EVT+ VI++P
Sbjct: 228 TDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDDVIDSPN 287
Query: 238 SIVFPQAENRMHAQNAIMLHALG 260
S+V+ QAENR+HAQ A++ +G
Sbjct: 288 SVVWDQAENRLHAQKAVLALVMG 310
>pdb|1PVV|A Chain A, Refined Structure Of Pyrococcus Furiosus Ornithine
Carbamoyltransferase At 1.87 A
Length = 315
Score = 291 bits (745), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 137/263 (52%), Positives = 189/263 (71%), Gaps = 3/263 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++MIF KPS RTRVSFE + LGGHA+YL D+Q+ + E D ARVL RY D IMAR
Sbjct: 49 LAMIFQKPSTRTRVSFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMAR 108
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
V+ H+D+ DLAK+ATVPVINGL+D++HPCQ +AD +TI E G ++G KVVYVGDGNN+
Sbjct: 109 VYDHKDVEDLAKYATVPVINGLSDFSHPCQALADYMTIWEKKGTIKGVKVVYVGDGNNVA 168
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGIS---KIEITNDPKEVVQGADVVY 177
HS ++ + + V A P+G+EPD++ ++ A + E+ +DP + V+ ADV+Y
Sbjct: 169 HSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIY 228
Query: 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPY 237
+DVWASMGQ+ EA R++ F+ FQV++ L+K A P FMHCLPA RG EVT+ VI++P
Sbjct: 229 TDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDDVIDSPN 288
Query: 238 SIVFPQAENRMHAQNAIMLHALG 260
S+V+ QAENR+HAQ A++ +G
Sbjct: 289 SVVWDQAENRLHAQKAVLALVMG 311
>pdb|4EP1|A Chain A, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Bacillus Anthracis
pdb|4EP1|B Chain B, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Bacillus Anthracis
Length = 340
Score = 248 bits (634), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/260 (47%), Positives = 171/260 (65%), Gaps = 6/260 (2%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+ +IF K S RTRVSFE G LGGH ++L ++QMG+ E D A+VL Y D IM R
Sbjct: 73 LGLIFDKHSTRTRVSFEAGMVQLGGHGMFLNGKEMQMGRGETVSDTAKVLSHYIDGIMIR 132
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
F H D+ +LAK +++PVINGLTD +HPCQ +AD +TI E +G K+ YVGDGNN+
Sbjct: 133 TFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEETNTFKGIKLAYVGDGNNVC 192
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKA---RKAGISKIEITNDPKEVVQGADVVY 177
HS LL ++ + H A P G+ P++E V+KA K ++IEI ++P+ V AD +Y
Sbjct: 193 HSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIY 252
Query: 178 SDVWASMGQK-EEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAP 236
+DVW SMGQ+ EE Y FQ +Q+++ L+K A +F+HCLPA R EVT +I+ P
Sbjct: 253 TDVWMSMGQEGEEEKYT--LFQPYQINKELVKHAKQTYHFLHCLPAHREEEVTGEIIDGP 310
Query: 237 YSIVFPQAENRMHAQNAIML 256
SIVF QA NR+HAQ A+++
Sbjct: 311 QSIVFEQAGNRLHAQKALLV 330
>pdb|1FB5|A Chain A, Low Resolution Structure Of Ovine Ornithine
Transcarbmoylase In The Unliganded State
Length = 320
Score = 239 bits (611), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 120/262 (45%), Positives = 164/262 (62%), Gaps = 4/262 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+ MIF K S RTR+S ETGF+LLGGH +L DI +G E D ARVL D ++AR
Sbjct: 48 LGMIFEKRSTRTRLSTETGFALLGGHPCFLTTQDIHLGVNESLTDTARVLSSMADAVLAR 107
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
V+ D+ LAK A++PVINGL+D HP QI+AD LT+ EH L+G + ++GDGNNI+
Sbjct: 108 VYKQSDLETLAKEASIPVINGLSDLYHPIQILADYLTLQEHYSSLKGLTLSWIGDGNNIL 167
Query: 121 HSWLLMASVIPFHFVCACPKGFEPD---KETVEKARKAGISKIEITNDPKEVVQGADVVY 177
HS ++ A+ H A PKG+EPD + E+ K +K+ +TNDP E G +V+
Sbjct: 168 HSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLI 227
Query: 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPY 237
+D W SMG++EE R QAFQG+QV+ K+A F+HCLP + EV + V +P
Sbjct: 228 TDTWISMGREEEKKKRLQAFQGYQVNSKTAKVAASAWTFLHCLP-RKPEEVDDDVFYSPR 286
Query: 238 SIVFPQAENRMHAQNAIMLHAL 259
S+VFP+AENR A+M+ L
Sbjct: 287 SLVFPEAENRKWTIMAVMVSLL 308
>pdb|1OTH|A Chain A, Crystal Structure Of Human Ornithine Transcarbamoylase
Complexed With N-Phosphonacetyl-L-Ornithine
pdb|1C9Y|A Chain A, Human Ornithine Transcarbamylase: Crystallographic
Insights Into Substrate Recognition And Catalytic
Mechanism
pdb|1EP9|A Chain A, Human Ornithine Transcarbamylase: Crystallographic
Insights Into Substrate Recognition And Conformational
Change
pdb|1FVO|A Chain A, Crystal Structure Of Human Ornithine Transcarbamylase
Complexed With Carbamoyl Phosphate
pdb|1FVO|B Chain B, Crystal Structure Of Human Ornithine Transcarbamylase
Complexed With Carbamoyl Phosphate
Length = 321
Score = 237 bits (604), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 119/262 (45%), Positives = 163/262 (62%), Gaps = 4/262 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+ MIF K S RTR+S ETGF+LLGGH +L DI +G E D ARVL D ++AR
Sbjct: 49 LGMIFEKRSTRTRLSTETGFALLGGHPCFLTTQDIHLGVNESLTDTARVLSSMADAVLAR 108
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
V+ D+ LAK A++P+INGL+D HP QI+AD LT+ EH L+G + ++GDGNNI+
Sbjct: 109 VYKQSDLDTLAKEASIPIINGLSDLYHPIQILADYLTLQEHYSSLKGLTLSWIGDGNNIL 168
Query: 121 HSWLLMASVIPFHFVCACPKGFEPD---KETVEKARKAGISKIEITNDPKEVVQGADVVY 177
HS ++ A+ H A PKG+EPD + E+ K +K+ +TNDP E G +V+
Sbjct: 169 HSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLI 228
Query: 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPY 237
+D W SMG++EE R QAFQG+QV K+A F+HCLP + EV + V +P
Sbjct: 229 TDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLP-RKPEEVDDEVFYSPR 287
Query: 238 SIVFPQAENRMHAQNAIMLHAL 259
S+VFP+AENR A+M+ L
Sbjct: 288 SLVFPEAENRKWTIMAVMVSLL 309
>pdb|4F2G|A Chain A, The Crystal Structure Of Ornithine Carbamoyltransferase
From Burkholderia Thailandensis E264
Length = 309
Score = 236 bits (601), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 117/255 (45%), Positives = 162/255 (63%), Gaps = 3/255 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++MIF K S RTR+SFE G LGGHA+++ D Q+G+ E D+A+V+ R DIIM R
Sbjct: 48 LAMIFEKSSTRTRLSFEAGIFQLGGHAVFMSTRDTQLGRGEPVEDSAQVISRMVDIIMIR 107
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
F I A+ + VPVINGLT+ HPCQ++AD T EH G + G V +VGD NN++
Sbjct: 108 TFEQDIIQRFAENSRVPVINGLTNEYHPCQVLADIFTYYEHRGPIRGKTVAWVGDANNML 167
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180
++W+ A ++ F + P G+ D + V+ A A ++ +DP E +GAD+V +DV
Sbjct: 168 YTWIQAARILDFKLQLSTPPGYALDAKLVD-AESAPF--YQVFDDPNEACKGADLVTTDV 224
Query: 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240
W SMG + E RK+AF + VDE +M A A FMHCLPA RG EVT GVI+ P S+V
Sbjct: 225 WTSMGFEAENEARKRAFADWCVDEEMMSHANSDALFMHCLPAHRGEEVTAGVIDGPQSVV 284
Query: 241 FPQAENRMHAQNAIM 255
+ +AENR+H Q A+M
Sbjct: 285 WDEAENRLHVQKALM 299
>pdb|3GD5|A Chain A, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
pdb|3GD5|B Chain B, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
pdb|3GD5|C Chain C, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
pdb|3GD5|D Chain D, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
pdb|3GD5|E Chain E, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
pdb|3GD5|F Chain F, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
Length = 323
Score = 234 bits (598), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 117/263 (44%), Positives = 167/263 (63%), Gaps = 3/263 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+ ++F K S RTRVSF LGG I L P + Q+G+ E RD ARVL RY D + R
Sbjct: 51 LGLVFLKASTRTRVSFTVAMYQLGGQVIDLSPSNTQVGRGEPVRDTARVLGRYVDGLAIR 110
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
F ++ + A +A +PVIN LTD+ HPCQ++AD LTI E+ GRL G K+ YVGDGNN+
Sbjct: 111 TFAQTELEEYAHYAGIPVINALTDHEHPCQVVADLLTIRENFGRLAGLKLAYVGDGNNVA 170
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARK-AGIS--KIEITNDPKEVVQGADVVY 177
HS LL + + A P+GF PD +A + AG + +++I DP E +GA ++Y
Sbjct: 171 HSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILY 230
Query: 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPY 237
+DVW SMGQ+ E +R Q F+ +Q++ L+ A +A +HCLPA RG E+T+ V+E P
Sbjct: 231 TDVWTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDEVMEGPR 290
Query: 238 SIVFPQAENRMHAQNAIMLHALG 260
S ++ +AENR+HAQ A++ +G
Sbjct: 291 SRIWDEAENRLHAQKAVLAALMG 313
>pdb|2EF0|A Chain A, Crystal Structure Of Ornithine Carbamoyltransferase From
Thermus Thermophilus
Length = 301
Score = 233 bits (595), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 117/259 (45%), Positives = 161/259 (62%), Gaps = 6/259 (2%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++++F KPS+RTR + E LGGHA+YL + +G+RE RD A+ L R+ + I AR
Sbjct: 48 LALLFEKPSLRTRTTLEVAMVHLGGHAVYLDQKQVGIGEREPVRDVAKNLERFVEGIAAR 107
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
VF H+ + LA+ A VPV+N L+D HP Q +AD LT+ E G L G +V +VGDGNN++
Sbjct: 108 VFRHETVEALARHAKVPVVNALSDRAHPLQALADLLTLKEVFGGLAGLEVAWVGDGNNVL 167
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180
+S L +A + A PKG+EPD +++A T+DPKE GA +Y+DV
Sbjct: 168 NSLLEVAPLAGLKVRVATPKGYEPDPGLLKRANAF------FTHDPKEAALGAHALYTDV 221
Query: 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240
W SMGQ+ E R + FQGFQV+ L+KL P+ F+HCLPA G E TE + P S V
Sbjct: 222 WTSMGQEAEREKRLRDFQGFQVNGELLKLLRPEGVFLHCLPAHYGEETTEEAVHGPRSRV 281
Query: 241 FPQAENRMHAQNAIMLHAL 259
F QAENR+H A++L L
Sbjct: 282 FDQAENRLHTAKAVLLTLL 300
>pdb|1VLV|A Chain A, Crystal Structure Of Ornithine Carbamoyltransferase
(tm1097) From Thermotoga Maritima At 2.25 A Resolution
Length = 325
Score = 217 bits (552), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 112/264 (42%), Positives = 167/264 (63%), Gaps = 5/264 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++MIF K S RTR++FET F+ GGH I+L P+DI +G +E D ARVL R D IM R
Sbjct: 61 LAMIFEKRSTRTRLAFETAFAEEGGHPIFLSPNDIHLGAKESLEDTARVLGRMVDAIMFR 120
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG-NNI 119
+ + + LA+++ VPV NGLTD HP Q +AD +TI E+ GRL+G KVV++GD NN+
Sbjct: 121 GYKQETVEKLAEYSGVPVYNGLTDEFHPTQALADLMTIEENFGRLKGVKVVFMGDTRNNV 180
Query: 120 VHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR---KAGISKIEITNDPKEVVQGADVV 176
S ++ + + +FV P+ +P + ++ + K + T++ +E + GADVV
Sbjct: 181 ATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVV 240
Query: 177 YSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAG-PKAYFMHCLPAERGVEVTEGVIEA 235
Y+DVWASMG++++ R + +QV+E +M++ G + FMHCLPA +G EVT VIE
Sbjct: 241 YTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYEVIEG 300
Query: 236 PYSIVFPQAENRMHAQNAIMLHAL 259
S V+ +AENR H A+M+ L
Sbjct: 301 KQSRVWDEAENRKHTIKAVMIATL 324
>pdb|2I6U|A Chain A, Crystal Structure Of Ornithine Carbamoyltransferase
Complexed With Carbamoyl Phosphate And L-Norvaline From
Mycobacterium Tuberculosis (Rv1656) At 2.2 A
pdb|2I6U|B Chain B, Crystal Structure Of Ornithine Carbamoyltransferase
Complexed With Carbamoyl Phosphate And L-Norvaline From
Mycobacterium Tuberculosis (Rv1656) At 2.2 A
pdb|2I6U|C Chain C, Crystal Structure Of Ornithine Carbamoyltransferase
Complexed With Carbamoyl Phosphate And L-Norvaline From
Mycobacterium Tuberculosis (Rv1656) At 2.2 A
pdb|2P2G|A Chain A, Crystal Structure Of Ornithine Carbamoyltransferase From
Mycobacterium Tuberculosis (rv1656): Orthorhombic Form
pdb|2P2G|B Chain B, Crystal Structure Of Ornithine Carbamoyltransferase From
Mycobacterium Tuberculosis (rv1656): Orthorhombic Form
pdb|2P2G|C Chain C, Crystal Structure Of Ornithine Carbamoyltransferase From
Mycobacterium Tuberculosis (rv1656): Orthorhombic Form
pdb|2P2G|D Chain D, Crystal Structure Of Ornithine Carbamoyltransferase From
Mycobacterium Tuberculosis (rv1656): Orthorhombic Form
pdb|2P2G|E Chain E, Crystal Structure Of Ornithine Carbamoyltransferase From
Mycobacterium Tuberculosis (rv1656): Orthorhombic Form
pdb|2P2G|F Chain F, Crystal Structure Of Ornithine Carbamoyltransferase From
Mycobacterium Tuberculosis (rv1656): Orthorhombic Form
Length = 307
Score = 213 bits (541), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 112/263 (42%), Positives = 159/263 (60%), Gaps = 4/263 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+++IF K S RTR SFE G + LGGHA+ + Q+G+ E +D A+VL RY D I+ R
Sbjct: 42 VAVIFDKNSTRTRFSFELGIAQLGGHAVVVDSGSTQLGRDETLQDTAKVLSRYVDAIVWR 101
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG-NNI 119
FG + + +A ATVPVIN L+D HPCQ++AD TI E G L G ++ Y GDG NN+
Sbjct: 102 TFGQERLDAMASVATVPVINALSDEFHPCQVLADLQTIAERKGALRGLRLSYFGDGANNM 161
Query: 120 VHSWLLMASVIPFHFVCACPKGFEPD---KETVEKARKAGISKIEITNDPKEVVQGADVV 176
HS LL H A P+GF PD + E+ + + + +T D GADV+
Sbjct: 162 AHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVL 221
Query: 177 YSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAP 236
+D W SMGQ+ + R + F+ FQ++ L+ LA A +HCLPA RG E+T+ V++ P
Sbjct: 222 VTDTWTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCLPAHRGDEITDAVMDGP 281
Query: 237 YSIVFPQAENRMHAQNAIMLHAL 259
S V+ +AENR+HAQ A+++ L
Sbjct: 282 ASAVWDEAENRLHAQKALLVWLL 304
>pdb|4A8H|A Chain A, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N-(Phosphonoacetyl)-Putrescine
pdb|4A8H|B Chain B, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N-(Phosphonoacetyl)-Putrescine
pdb|4A8P|A Chain A, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
pdb|4A8P|B Chain B, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
pdb|4A8P|C Chain C, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
pdb|4A8P|D Chain D, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
pdb|4A8P|E Chain E, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
pdb|4A8P|F Chain F, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
Length = 355
Score = 209 bits (533), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 113/267 (42%), Positives = 160/267 (59%), Gaps = 7/267 (2%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+ MIF + S RTRVSFET LGGH YL P IQ+G E D +RVL R DI+MAR
Sbjct: 44 LGMIFQQSSTRTRVSFETAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMAR 103
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHV---GRLEGTKVVYVGDGN 117
V H I+DLA AT+PVING++DYNHP Q + D T++EH+ +LE KVV+VGD
Sbjct: 104 VERHHSIVDLANCATIPVINGMSDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDAT 163
Query: 118 NIVHSWLLMASVIPFHFVCACPKGFEPDKETVEK-ARKAGISKIE-ITNDPKEVVQGADV 175
+ S L+ + + +FV P+GF+ ++E K A+ +S + D V+GAD
Sbjct: 164 QVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDASSVEGADF 223
Query: 176 VYSDVWASMGQKE--EAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVI 233
+Y+DVW + + E E K + +QV++ +M AG FMHCLPA RG EVT+ VI
Sbjct: 224 LYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDEVI 283
Query: 234 EAPYSIVFPQAENRMHAQNAIMLHALG 260
+ SI F +AENR+ + ++++ +
Sbjct: 284 DGKNSICFDEAENRLTSIRGLLVYLMN 310
>pdb|4A8T|A Chain A, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis Lacking Its C-Terminal Helix, With
Bound N5-(Phosphonoacetyl)-L-Ornithine
Length = 339
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/266 (42%), Positives = 160/266 (60%), Gaps = 7/266 (2%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+ MIF + S RTRVSFET LGGH YL P IQ+G E D +RVL R DI+MAR
Sbjct: 66 LGMIFQQSSTRTRVSFETAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMAR 125
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHV---GRLEGTKVVYVGDGN 117
V H I+DLA AT+PVING++DYNHP Q + D T++EH+ +LE KVV+VGD
Sbjct: 126 VERHHSIVDLANCATIPVINGMSDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDAT 185
Query: 118 NIVHSWLLMASVIPFHFVCACPKGFEPDKETVEK-ARKAGISKIE-ITNDPKEVVQGADV 175
+ S L+ + + +FV P+GF+ ++E K A+ +S + D V+GAD
Sbjct: 186 QVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDASSVEGADF 245
Query: 176 VYSDVWASMGQKE--EAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVI 233
+Y+DVW + + E E K + +QV++ +M AG FMHCLPA RG EVT+ VI
Sbjct: 246 LYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDEVI 305
Query: 234 EAPYSIVFPQAENRMHAQNAIMLHAL 259
+ SI F +AENR+ + ++++ +
Sbjct: 306 DGKNSICFDEAENRLTSIRGLLVYLM 331
>pdb|3TXX|A Chain A, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|B Chain B, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|C Chain C, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|D Chain D, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|E Chain E, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|F Chain F, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|G Chain G, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|H Chain H, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|I Chain I, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|J Chain J, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|K Chain K, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|L Chain L, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
Length = 359
Score = 209 bits (532), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/266 (42%), Positives = 160/266 (60%), Gaps = 7/266 (2%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+ MIF + S RTRVSFET LGGH YL P IQ+G E D +RVL R DI+MAR
Sbjct: 64 LGMIFQQSSTRTRVSFETAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMAR 123
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHV---GRLEGTKVVYVGDGN 117
V H I+DLA AT+PVING++DYNHP Q + D T++EH+ +LE KVV+VGD
Sbjct: 124 VERHHSIVDLANCATIPVINGMSDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDAT 183
Query: 118 NIVHSWLLMASVIPFHFVCACPKGFEPDKETVEK-ARKAGISKIE-ITNDPKEVVQGADV 175
+ S L+ + + +FV P+GF+ ++E K A+ +S + D V+GAD
Sbjct: 184 QVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDASSVEGADF 243
Query: 176 VYSDVWASMGQKE--EAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVI 233
+Y+DVW + + E E K + +QV++ +M AG FMHCLPA RG EVT+ VI
Sbjct: 244 LYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDEVI 303
Query: 234 EAPYSIVFPQAENRMHAQNAIMLHAL 259
+ SI F +AENR+ + ++++ +
Sbjct: 304 DGKNSICFDEAENRLTSIRGLLVYLM 329
>pdb|1DXH|A Chain A, Catabolic Ornithine Carbamoyltransferase From Pseudomonas
Aeruginosa
Length = 335
Score = 198 bits (504), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/286 (40%), Positives = 159/286 (55%), Gaps = 26/286 (9%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+++IF K S RTR +FE G + Y+ P+ Q+G +E +D ARVL R D I R
Sbjct: 48 IALIFEKTSTRTRCAFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYR 107
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGR-LEGTKVVYVGDG-NN 118
F + + +LAKFA VPV NGLTD HP Q++AD LT+ EH + L Y+GD NN
Sbjct: 108 GFKQEIVEELAKFAGVPVFNGLTDEYHPTQMLADVLTMREHSDKPLHDISYAYLGDARNN 167
Query: 119 IVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK---AGISKIEITNDPKEVVQGADV 175
+ +S LL+ + + A PK P E V + +K +K+ +T DPKE V+G D
Sbjct: 168 MGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDF 227
Query: 176 VYSDVWASMGQKEEA-AYRKQAFQGFQVDEFLMKLAG-PKAYFMHCLPA----------- 222
V++DVW SMG+ EA R + +QV+ +MK G P+A FMHCLPA
Sbjct: 228 VHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPAFHNSETKVGKQ 287
Query: 223 --------ERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
G+EVTE V E+PY+I F QAENRMH AI++ L
Sbjct: 288 IAEQYPNLANGIEVTEDVFESPYNIAFEQAENRMHTIKAILVSTLA 333
>pdb|1ORT|A Chain A, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|B Chain B, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|C Chain C, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|D Chain D, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|E Chain E, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|F Chain F, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|G Chain G, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|H Chain H, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|I Chain I, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|J Chain J, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|K Chain K, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|L Chain L, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
Length = 335
Score = 198 bits (503), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 117/286 (40%), Positives = 159/286 (55%), Gaps = 26/286 (9%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+++IF K S RTR +FE G + Y+ P+ Q+G +E +D ARVL R D I R
Sbjct: 48 IALIFEKTSTRTRCAFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIGYR 107
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGR-LEGTKVVYVGDG-NN 118
F + + +LAKFA VPV NGLTD HP Q++AD LT+ EH + L Y+GD NN
Sbjct: 108 GFKQEIVEELAKFAGVPVFNGLTDEYHPTQMLADVLTMREHSDKPLHDISYAYLGDARNN 167
Query: 119 IVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK---AGISKIEITNDPKEVVQGADV 175
+ +S LL+ + + A PK P E V + +K +K+ +T DPKE V+G D
Sbjct: 168 MGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDF 227
Query: 176 VYSDVWASMGQKEEA-AYRKQAFQGFQVDEFLMKLAG-PKAYFMHCLPA----------- 222
V++DVW SMG+ EA R + +QV+ +MK G P+A FMHCLPA
Sbjct: 228 VHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPAFHNSETKVGKQ 287
Query: 223 --------ERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
G+EVTE V E+PY+I F QAENRMH AI++ L
Sbjct: 288 IAEQYPNLANGIEVTEDVFESPYNIAFEQAENRMHTIKAILVSTLA 333
>pdb|3TPF|A Chain A, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Campylobacter Jejuni Subsp.
Jejuni Nctc 11168
pdb|3TPF|B Chain B, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Campylobacter Jejuni Subsp.
Jejuni Nctc 11168
pdb|3TPF|C Chain C, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Campylobacter Jejuni Subsp.
Jejuni Nctc 11168
pdb|3TPF|D Chain D, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Campylobacter Jejuni Subsp.
Jejuni Nctc 11168
pdb|3TPF|E Chain E, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Campylobacter Jejuni Subsp.
Jejuni Nctc 11168
pdb|3TPF|F Chain F, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Campylobacter Jejuni Subsp.
Jejuni Nctc 11168
Length = 307
Score = 191 bits (486), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 148/259 (57%), Gaps = 4/259 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++ IF K S RTR +FE + LGG A++L +D+Q+ + E +D ARV+ D + R
Sbjct: 39 LAXIFEKNSTRTRXAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAXVDFVXXR 98
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEG-TKVVYVGDGNNI 119
V H+ +L+ A+++ PVIN L++ HP Q++ D TI E G KV ++GD NN
Sbjct: 99 VNKHETLLEFARYSKAPVINALSELYHPTQVLGDLFTIKEWNKXQNGIAKVAFIGDSNNX 158
Query: 120 VHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIEITNDPKEVVQGADVV 176
+SWL+ A+++ F A PK ++ E E A K + +KI + D E ++ DVV
Sbjct: 159 CNSWLITAAILGFEISIAXPKNYKISPEIWEFAXKQALISGAKISLGYDKFEALKDKDVV 218
Query: 177 YSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAP 236
+D W S G++ E + + F+GF +DE +A A +HCLPA RG EV+E + E
Sbjct: 219 ITDTWVSXGEENEKERKIKEFEGFXIDEKAXSVANKDAILLHCLPAYRGYEVSEEIFEKH 278
Query: 237 YSIVFPQAENRMHAQNAIM 255
++F +A NR++ A++
Sbjct: 279 ADVIFEEARNRLYVVKALL 297
>pdb|3UPD|A Chain A, 2.9 Angstrom Crystal Structure Of Ornithine
Carbamoyltransferase (Argf) From Vibrio Vulnificus
pdb|4H31|A Chain A, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Vibrio Vulnificus In Complex
With Carbamoyl Phosphate And L-Norvaline
pdb|4H31|B Chain B, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Vibrio Vulnificus In Complex
With Carbamoyl Phosphate And L-Norvaline
pdb|4H31|C Chain C, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Vibrio Vulnificus In Complex
With Carbamoyl Phosphate And L-Norvaline
Length = 358
Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 115/286 (40%), Positives = 160/286 (55%), Gaps = 27/286 (9%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+++IF K S RTR +FE G Y+GP Q+G +E +D ARVL R D I R
Sbjct: 73 IALIFEKASTRTRCAFEVAAFDQGAQVTYIGPSGSQIGDKESMKDTARVLGRMYDGIQYR 132
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHV-GR-LEGTKVVYVGDG-N 117
FG + +L FA VPV NGLTD HP QI+AD LT++EH G+ L + Y+GD N
Sbjct: 133 GFGQAIVEELGAFAGVPVWNGLTDEFHPTQILADFLTMLEHSQGKALADIQFAYLGDARN 192
Query: 118 NIVHSWLLMASVIPFHFVCACPKGFEPDKETVEK----ARKAGISKIEITNDPKEVVQGA 173
N+ +S ++ A+ + P+ + PD+E V A++ G KI +T + E VQG
Sbjct: 193 NVGNSLMVGAAKMGMDIRLVGPQAYWPDEELVAACQAIAKQTG-GKITLTENVAEGVQGC 251
Query: 174 DVVYSDVWASMGQKEEAAYRKQAF-QGFQVDEFLMKLAG-PKAYFMHCLPA--------- 222
D +Y+DVW SMG+ EA + A + +QV+ ++K G P FMHCLPA
Sbjct: 252 DFLYTDVWVSMGESPEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHCLPAFHNDETTIG 311
Query: 223 --------ERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
+G+EVTE V E+ +SIVF +AENRMH A+M+ LG
Sbjct: 312 KQVADKFGMKGLEVTEEVFESEHSIVFDEAENRMHTIKAVMVATLG 357
>pdb|1AKM|A Chain A, Ornithine Transcarbamylase From Escherichia Coli
pdb|1AKM|B Chain B, Ornithine Transcarbamylase From Escherichia Coli
pdb|1AKM|C Chain C, Ornithine Transcarbamylase From Escherichia Coli
pdb|1DUV|G Chain G, Crystal Structure Of E. Coli Ornithine Transcarbamoylase
Complexed With Ndelta-L-Ornithine-Diaminophosphinyl-N-
Sulphonic Acid (Psorn)
pdb|1DUV|H Chain H, Crystal Structure Of E. Coli Ornithine Transcarbamoylase
Complexed With Ndelta-L-Ornithine-Diaminophosphinyl-N-
Sulphonic Acid (Psorn)
pdb|1DUV|I Chain I, Crystal Structure Of E. Coli Ornithine Transcarbamoylase
Complexed With Ndelta-L-Ornithine-Diaminophosphinyl-N-
Sulphonic Acid (Psorn)
Length = 333
Score = 180 bits (456), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 111/285 (38%), Positives = 157/285 (55%), Gaps = 26/285 (9%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+++IF K S RTR SFE G YLGP Q+G +E +D ARVL R D I R
Sbjct: 47 IALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYR 106
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHV-GR-LEGTKVVYVGDG-N 117
+G + + LA++A+VPV NGLT+ HP Q++AD LT+ EH+ G+ +VY GD N
Sbjct: 107 GYGQEIVETLAEYASVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARN 166
Query: 118 NIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR---KAGISKIEITNDPKEVVQGAD 174
N+ +S L A++ P+ P+ V + R + I +T D + V+GAD
Sbjct: 167 NMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGAD 226
Query: 175 VVYSDVWASMGQ-KEEAAYRKQAFQGFQVDEFLMKLAG-PKAYFMHCLPA---------- 222
+Y+DVW SMG+ KE+ A R + +QV+ +M+L G P+ F+HCLPA
Sbjct: 227 FIYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGK 286
Query: 223 --------ERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHAL 259
G+EVT+ V E+ SIVF QAENRMH A+M+ L
Sbjct: 287 KMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATL 331
>pdb|2W37|A Chain A, Crystal Structure Of The Hexameric Catabolic Ornithine
Transcarbamylase From Lactobacillus Hilgardii
pdb|2W37|B Chain B, Crystal Structure Of The Hexameric Catabolic Ornithine
Transcarbamylase From Lactobacillus Hilgardii
pdb|2W37|C Chain C, Crystal Structure Of The Hexameric Catabolic Ornithine
Transcarbamylase From Lactobacillus Hilgardii
Length = 359
Score = 179 bits (455), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 110/285 (38%), Positives = 162/285 (56%), Gaps = 27/285 (9%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++++F K S RTR +F T LG H YLG +DIQ+GK+E T D A+VL D I R
Sbjct: 70 IALLFEKSSTRTRSAFTTASIDLGAHPEYLGQNDIQLGKKESTSDTAKVLGSMFDGIEFR 129
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG-NNI 119
F D LA+ + VPV NGLTD HP Q++AD +T+ E+ G+L+G + ++GDG NN+
Sbjct: 130 GFKQSDAEILARDSGVPVWNGLTDEWHPTQMLADFMTVKENFGKLQGLTLTFMGDGRNNV 189
Query: 120 VHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR----KAGISKIEITNDPKEVVQGADV 175
+S L+ +++ + PK P +ET A+ K+G +K+ IT+D E ++G++V
Sbjct: 190 ANSLLVTGAILGVNIHIVAPKALFPTEETQNIAKGFAEKSG-AKLVITDDLDEGLKGSNV 248
Query: 176 VYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGP---KAYFMHCLPA---------- 222
VY+DVW SMG+ R + +QV+ MK G + FMHCLPA
Sbjct: 249 VYTDVWVSMGESNWEE-RVKELTPYQVNMEAMKKTGTPDDQLIFMHCLPAFHNTDTQYGK 307
Query: 223 ----ERGV---EVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
+ G+ EVT+ V + Y+ F +AENRMH+ A+M LG
Sbjct: 308 EIKEKYGITEMEVTDEVFTSKYARQFEEAENRMHSIKAMMAATLG 352
>pdb|3SDS|A Chain A, Crystal Structure Of A Mitochondrial Ornithine
Carbamoyltransferase From Coccidioides Immitis
pdb|3SDS|B Chain B, Crystal Structure Of A Mitochondrial Ornithine
Carbamoyltransferase From Coccidioides Immitis
pdb|3SDS|C Chain C, Crystal Structure Of A Mitochondrial Ornithine
Carbamoyltransferase From Coccidioides Immitis
Length = 353
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/270 (40%), Positives = 152/270 (56%), Gaps = 21/270 (7%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++M+F+K S RTRVS E +GGH ++LG DDIQ+G E D + V+ I+AR
Sbjct: 69 VAMMFSKRSTRTRVSTEGAVVKMGGHPMFLGKDDIQLGVNESLYDTSVVISSMVSCIVAR 128
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGR-------------LEG 107
V H DI +LAK ++VPVIN L D HP Q +AD LTI E LEG
Sbjct: 129 VGPHSDIANLAKHSSVPVINALCDTFHPLQAIADFLTIHESFASQSATHGTHPSSLGLEG 188
Query: 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFE-PDK--ETVEKARKAGISKIEITN 164
K+ +VGD NN++ + A+ + + A P+G+E P E ++KAR+ S +T
Sbjct: 189 LKIAWVGDANNVLFDLAIAATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQ 248
Query: 165 D--PKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKA--YFMHCL 220
P+ V+ ADV+ +D W SMGQ+ E R +AF+ F+V L K G K FMHCL
Sbjct: 249 TTVPEVAVKDADVIVTDTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHCL 308
Query: 221 PAERGVEVTEGVIEAPYSIVFPQAENRMHA 250
P EV++ V + S+VFP+AENR+ A
Sbjct: 309 P-RHPEEVSDEVFYSERSLVFPEAENRLWA 337
>pdb|2OTC|A Chain A, Ornithine Transcarbamoylase Complexed With N-
(Phosphonacetyl)-L-Ornithine
pdb|2OTC|B Chain B, Ornithine Transcarbamoylase Complexed With N-
(Phosphonacetyl)-L-Ornithine
pdb|2OTC|C Chain C, Ornithine Transcarbamoylase Complexed With N-
(Phosphonacetyl)-L-Ornithine
pdb|2OTC|D Chain D, Ornithine Transcarbamoylase Complexed With N-
(Phosphonacetyl)-L-Ornithine
pdb|2OTC|E Chain E, Ornithine Transcarbamoylase Complexed With N-
(Phosphonacetyl)-L-Ornithine
pdb|2OTC|F Chain F, Ornithine Transcarbamoylase Complexed With N-
(Phosphonacetyl)-L-Ornithine
pdb|2OTC|G Chain G, Ornithine Transcarbamoylase Complexed With N-
(Phosphonacetyl)-L-Ornithine
pdb|2OTC|H Chain H, Ornithine Transcarbamoylase Complexed With N-
(Phosphonacetyl)-L-Ornithine
pdb|2OTC|I Chain I, Ornithine Transcarbamoylase Complexed With N-
(Phosphonacetyl)-L-Ornithine
Length = 333
Score = 179 bits (453), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/285 (38%), Positives = 156/285 (54%), Gaps = 26/285 (9%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+++IF K S RTR SFE G YLGP Q+G +E +D ARVL R D I R
Sbjct: 47 IALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYR 106
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHV-GR-LEGTKVVYVGDG-N 117
+G + + LA++A VPV NGLT+ HP Q++AD LT+ EH+ G+ +VY GD N
Sbjct: 107 GYGQEIVETLAEYARVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARN 166
Query: 118 NIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR---KAGISKIEITNDPKEVVQGAD 174
N+ +S L A++ P+ P+ V + R + I +T D + V+GAD
Sbjct: 167 NMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGAD 226
Query: 175 VVYSDVWASMGQ-KEEAAYRKQAFQGFQVDEFLMKLAG-PKAYFMHCLPA---------- 222
+Y+DVW SMG+ KE+ A R + +QV+ +M+L G P+ F+HCLPA
Sbjct: 227 FIYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGK 286
Query: 223 --------ERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHAL 259
G+EVT+ V E+ SIVF QAENRMH A+M+ L
Sbjct: 287 KMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATL 331
>pdb|3GRF|A Chain A, X-Ray Structure Of Ornithine Transcarbamoylase From
Giardia Lamblia
Length = 328
Score = 171 bits (434), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 100/270 (37%), Positives = 150/270 (55%), Gaps = 19/270 (7%)
Query: 4 IFAKPSMRTRVSFETGFSLLGGHAIY--LGPDDIQMGKREETRDAARVLCRYNDIIMARV 61
FAKPS+RTRVS ET + LGGHAIY LG + +G +E +D A V R DI AR+
Sbjct: 50 FFAKPSLRTRVSLETAMTRLGGHAIYYELGANS-NVGGKETVQDTAEVFSRMVDICTARL 108
Query: 62 FGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHV-------GRLEGTKVVYVG 114
+ + ++A+ A+VP IN L D+ HP Q++ D +TI E +G K Y G
Sbjct: 109 ATKEMMREMAQHASVPCINALDDFGHPLQMVCDFMTIKEKFTAAGEFSNGFKGIKFAYCG 168
Query: 115 DG-NNIVHSWLLMASVIPFHFVCACP--KGFEPDKETVEK-----ARKAGISKIEITNDP 166
D NN+ + + +++ CP K F+P KE +++ A+ I+I +D
Sbjct: 169 DSMNNVTYDLMRGCALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDC 228
Query: 167 KEVVQGADVVYSDVWASMG-QKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERG 225
K+ +G DVVY+D W S KE+ R + FQVD+ +M + ++ FM+CLPA RG
Sbjct: 229 KKGCEGVDVVYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCLPATRG 288
Query: 226 VEVTEGVIEAPYSIVFPQAENRMHAQNAIM 255
E T VI+ P S+ + +A NR+H+ A++
Sbjct: 289 EEQTASVIDGPKSVCYDEAGNRLHSAMAVL 318
>pdb|4AMU|A Chain A, Structure Of Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P321 Space Group
pdb|4AMU|B Chain B, Structure Of Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P321 Space Group
pdb|4AMU|C Chain C, Structure Of Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P321 Space Group
pdb|4AMU|D Chain D, Structure Of Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P321 Space Group
pdb|4ANF|A Chain A, Structure Of The Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P23 Space Group
pdb|4ANF|B Chain B, Structure Of The Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P23 Space Group
pdb|4ANF|C Chain C, Structure Of The Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P23 Space Group
pdb|4ANF|D Chain D, Structure Of The Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P23 Space Group
Length = 365
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 152/293 (51%), Gaps = 35/293 (11%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++++F K S RTR +FE S LG Y+GP MGK+E D A+VL R+ D I R
Sbjct: 74 IAILFQKDSTRTRCAFEVAASDLGAGVTYIGPSGSNMGKKESIEDTAKVLGRFYDGIEFR 133
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGD-GNNI 119
F D+ L K++ VPV NGLTD HP QI+AD +T+ E G L+ K+V++GD NN+
Sbjct: 134 GFAQSDVDALVKYSGVPVWNGLTDDEHPTQIIADFMTMKEKFGNLKNKKIVFIGDYKNNV 193
Query: 120 VHSWLLMASVIPFHFVCACPKGF--EPDKETVEKA-----RKAGISKIEITNDPKEVVQG 172
S ++ A+ H V P + E DK + K R G + + D Q
Sbjct: 194 GVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGG--SLRFSTDKILAAQD 251
Query: 173 ADVVYSDVWASMGQKEEA-AYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPA--------- 222
ADV+Y+DVW S+G+ E R + FQVD ++K A F+HCLPA
Sbjct: 252 ADVIYTDVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCLPAFHDDHTSFS 311
Query: 223 --------------ERG-VEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
+G +EVT+ V ++ ++ F QAENRMH+ AI+L +G
Sbjct: 312 KEVATTLGAKYPIVAKGEMEVTDEVFQSLHNKAFDQAENRMHSIKAIILSTIG 364
>pdb|3M5C|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
K302e Mutant Complexed With Palao
Length = 359
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 140/300 (46%), Gaps = 45/300 (15%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPD------DIQMGK------REETRDAAR 48
++++F PSMRTR SFE G LGGHA+ L P + +G E + AR
Sbjct: 61 IALVFFNPSMRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFNLGTVMDGDTEEHIAEVAR 120
Query: 49 VLCRYNDIIMARVFGH----------QDILDLAKFATVPVINGLTDYNHPCQIMADALTI 98
VL RY D+I R F Q + AK++ VPVIN + HPCQ +A AL +
Sbjct: 121 VLGRYVDLIGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVIN-METITHPCQELAHALAL 179
Query: 99 IEHVGR--LEGTKVVYVGD------GNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVE 150
EH G L G K V + +S L +A+ + CP PD E
Sbjct: 180 QEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPT---PDYILDE 236
Query: 151 K-----ARKAGIS--KIEITNDPKEVVQGADVVYSDVWASM---GQKEEAAYRKQAFQGF 200
+ A+ S +++++D GADVVY+ W ++ G E + +Q F
Sbjct: 237 RYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHF 296
Query: 201 QVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
VDE M L F HCLP R VE T+ V+++P I +AENR+H Q AIM +G
Sbjct: 297 IVDERKMALTN-NGVFSHCLPLRRNVEATDAVMDSPNCIAIDEAENRLHVQKAIMAALVG 355
>pdb|3M5D|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
K302r Mutant Complexed With Palao
Length = 359
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 139/300 (46%), Gaps = 45/300 (15%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPD------DIQMGK------REETRDAAR 48
++++F PSMRTR SFE G LGGHA+ L P + +G E + AR
Sbjct: 61 IALVFFNPSMRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFNLGTVMDGDTEEHIAEVAR 120
Query: 49 VLCRYNDIIMARVFGH----------QDILDLAKFATVPVINGLTDYNHPCQIMADALTI 98
VL RY D+I R F Q + AK++ VPVIN + HPCQ +A AL +
Sbjct: 121 VLGRYVDLIGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVIN-METITHPCQELAHALAL 179
Query: 99 IEHVGR--LEGTKVVYVGD------GNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVE 150
EH G L G K V + +S L +A+ + CP PD E
Sbjct: 180 QEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPT---PDYILDE 236
Query: 151 K-----ARKAGIS--KIEITNDPKEVVQGADVVYSDVWASM---GQKEEAAYRKQAFQGF 200
+ A+ S +++++D GADVVY+ W ++ G E + +Q F
Sbjct: 237 RYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHF 296
Query: 201 QVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
VDE M L F HCLP R V T+ V+++P I +AENR+H Q AIM +G
Sbjct: 297 IVDERKMALTN-NGVFSHCLPLRRNVRATDAVMDSPNCIAIDEAENRLHVQKAIMAALVG 355
>pdb|3KZC|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
pdb|3KZK|A Chain A, Crystal Structure Of Acetylornithine Transcarbamylase
Complexed With Acetylcitrulline
pdb|3KZM|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
Complexed With Carbamyl Phosphate
pdb|3KZN|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
Complexed With N-Acetyl-L-Ornirthine
pdb|3KZO|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
Complexed With Carbamyl Phosphate And
N-Acetyl-L-Norvaline
pdb|3M4J|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
Complexed With Palao
Length = 359
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 139/300 (46%), Gaps = 45/300 (15%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPD------DIQMGK------REETRDAAR 48
++++F PSMRTR SFE G LGGHA+ L P + +G E + AR
Sbjct: 61 IALVFFNPSMRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFNLGTVMDGDTEEHIAEVAR 120
Query: 49 VLCRYNDIIMARVFGH----------QDILDLAKFATVPVINGLTDYNHPCQIMADALTI 98
VL RY D+I R F Q + AK++ VPVIN + HPCQ +A AL +
Sbjct: 121 VLGRYVDLIGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVIN-METITHPCQELAHALAL 179
Query: 99 IEHVGR--LEGTKVVYVGD------GNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVE 150
EH G L G K V + +S L +A+ + CP PD E
Sbjct: 180 QEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPT---PDYILDE 236
Query: 151 K-----ARKAGIS--KIEITNDPKEVVQGADVVYSDVWASM---GQKEEAAYRKQAFQGF 200
+ A+ S +++++D GADVVY+ W ++ G E + +Q F
Sbjct: 237 RYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHF 296
Query: 201 QVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
VDE M L F HCLP R V T+ V+++P I +AENR+H Q AIM +G
Sbjct: 297 IVDERKMALTN-NGVFSHCLPLRRNVXATDAVMDSPNCIAIDEAENRLHVQKAIMAALVG 355
>pdb|3L05|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
E92s Mutant Complexed With Carbamyl Phosphate And
N-Succinyl-L-Norvaline
Length = 359
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 139/300 (46%), Gaps = 45/300 (15%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPD------DIQMGK------REETRDAAR 48
++++F PSMRTR SFE G LGGHA+ L P + +G E + AR
Sbjct: 61 IALVFFNPSMRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFNLGTVMDGDTSEHIAEVAR 120
Query: 49 VLCRYNDIIMARVFGH----------QDILDLAKFATVPVINGLTDYNHPCQIMADALTI 98
VL RY D+I R F Q + AK++ VPVIN + HPCQ +A AL +
Sbjct: 121 VLGRYVDLIGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVIN-METITHPCQELAHALAL 179
Query: 99 IEHVGR--LEGTKVVYVGD------GNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVE 150
EH G L G K V + +S L +A+ + CP PD E
Sbjct: 180 QEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPT---PDYILDE 236
Query: 151 K-----ARKAGIS--KIEITNDPKEVVQGADVVYSDVWASM---GQKEEAAYRKQAFQGF 200
+ A+ S +++++D GADVVY+ W ++ G E + +Q F
Sbjct: 237 RYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHF 296
Query: 201 QVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
VDE M L F HCLP R V T+ V+++P I +AENR+H Q AIM +G
Sbjct: 297 IVDERKMALTN-NGVFSHCLPLRRNVXATDAVMDSPNCIAIDEAENRLHVQKAIMAALVG 355
>pdb|3M4N|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
K302a Mutant Complexed With Palao
Length = 359
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 139/300 (46%), Gaps = 45/300 (15%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPD------DIQMGK------REETRDAAR 48
++++F PSMRTR SFE G LGGHA+ L P + +G E + AR
Sbjct: 61 IALVFFNPSMRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFNLGTVMDGDTEEHIAEVAR 120
Query: 49 VLCRYNDIIMARVFGH----------QDILDLAKFATVPVINGLTDYNHPCQIMADALTI 98
VL RY D+I R F Q + AK++ VPVIN + HPCQ +A AL +
Sbjct: 121 VLGRYVDLIGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVIN-METITHPCQELAHALAL 179
Query: 99 IEHVGR--LEGTKVVYVGD------GNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVE 150
EH G L G K V + +S L +A+ + CP PD E
Sbjct: 180 QEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPT---PDYILDE 236
Query: 151 K-----ARKAGIS--KIEITNDPKEVVQGADVVYSDVWASM---GQKEEAAYRKQAFQGF 200
+ A+ S +++++D GADVVY+ W ++ G E + +Q F
Sbjct: 237 RYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHF 296
Query: 201 QVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
VDE M L F HCLP R V T+ V+++P I +AENR+H Q AIM +G
Sbjct: 297 IVDERKMALTN-NGVFSHCLPLRRNVAATDAVMDSPNCIAIDEAENRLHVQKAIMAALVG 355
>pdb|3L02|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
E92a Mutant Complexed With Carbamyl Phosphate And N-
Succinyl-L-Norvaline
Length = 359
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 139/300 (46%), Gaps = 45/300 (15%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPD------DIQMGK------REETRDAAR 48
++++F PSMRTR SFE G LGGHA+ L P + +G E + AR
Sbjct: 61 IALVFFNPSMRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFNLGTVMDGDTAEHIAEVAR 120
Query: 49 VLCRYNDIIMARVFGH----------QDILDLAKFATVPVINGLTDYNHPCQIMADALTI 98
VL RY D+I R F Q + AK++ VPVIN + HPCQ +A AL +
Sbjct: 121 VLGRYVDLIGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVIN-METITHPCQELAHALAL 179
Query: 99 IEHVGR--LEGTKVVYVGD------GNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVE 150
EH G L G K V + +S L +A+ + CP PD E
Sbjct: 180 QEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPT---PDYILDE 236
Query: 151 K-----ARKAGIS--KIEITNDPKEVVQGADVVYSDVWASM---GQKEEAAYRKQAFQGF 200
+ A+ S +++++D GADVVY+ W ++ G E + +Q F
Sbjct: 237 RYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHF 296
Query: 201 QVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
VDE M L F HCLP R V T+ V+++P I +AENR+H Q AIM +G
Sbjct: 297 IVDERKMALTN-NGVFSHCLPLRRNVXATDAVMDSPNCIAIDEAENRLHVQKAIMAALVG 355
>pdb|3L04|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
E92p Mutant Complexed With Carbamyl Phosphate And N-
Succinyl-L-Norvaline
Length = 359
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 139/300 (46%), Gaps = 45/300 (15%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPD------DIQMGK------REETRDAAR 48
++++F PSMRTR SFE G LGGHA+ L P + +G E + AR
Sbjct: 61 IALVFFNPSMRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFNLGTVMDGDTPEHIAEVAR 120
Query: 49 VLCRYNDIIMARVFGH----------QDILDLAKFATVPVINGLTDYNHPCQIMADALTI 98
VL RY D+I R F Q + AK++ VPVIN + HPCQ +A AL +
Sbjct: 121 VLGRYVDLIGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVIN-METITHPCQELAHALAL 179
Query: 99 IEHVGR--LEGTKVVYVGD------GNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVE 150
EH G L G K V + +S L +A+ + CP PD E
Sbjct: 180 QEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPT---PDYILDE 236
Query: 151 K-----ARKAGIS--KIEITNDPKEVVQGADVVYSDVWASM---GQKEEAAYRKQAFQGF 200
+ A+ S +++++D GADVVY+ W ++ G E + +Q F
Sbjct: 237 RYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHF 296
Query: 201 QVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
VDE M L F HCLP R V T+ V+++P I +AENR+H Q AIM +G
Sbjct: 297 IVDERKMALTN-NGVFSHCLPLRRNVXATDAVMDSPNCIAIDEAENRLHVQKAIMAALVG 355
>pdb|3L06|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
E92v Mutant Complexed With Carbamyl Phosphate And N-
Succinyl-L-Norvaline
Length = 359
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 139/300 (46%), Gaps = 45/300 (15%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPD------DIQMGKR------EETRDAAR 48
++++F PSMRTR SFE G LGGHA+ L P + +G E + AR
Sbjct: 61 IALVFFNPSMRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFNLGTVMDGDTVEHIAEVAR 120
Query: 49 VLCRYNDIIMARVFGH----------QDILDLAKFATVPVINGLTDYNHPCQIMADALTI 98
VL RY D+I R F Q + AK++ VPVIN + HPCQ +A AL +
Sbjct: 121 VLGRYVDLIGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVIN-METITHPCQELAHALAL 179
Query: 99 IEHVGR--LEGTKVVYVGD------GNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVE 150
EH G L G K V + +S L +A+ + CP PD E
Sbjct: 180 QEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPT---PDYILDE 236
Query: 151 K-----ARKAGIS--KIEITNDPKEVVQGADVVYSDVWASM---GQKEEAAYRKQAFQGF 200
+ A+ S +++++D GADVVY+ W ++ G E + +Q F
Sbjct: 237 RYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHF 296
Query: 201 QVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
VDE M L F HCLP R V T+ V+++P I +AENR+H Q AIM +G
Sbjct: 297 IVDERKMALTN-NGVFSHCLPLRRNVXATDAVMDSPNCIAIDEAENRLHVQKAIMAALVG 355
>pdb|2BE7|A Chain A, Crystal Structure Of The Unliganded (T-State) Aspartate
Transcarbamoylase Of The Psychrophilic Bacterium
Moritella Profunda
pdb|2BE7|B Chain B, Crystal Structure Of The Unliganded (T-State) Aspartate
Transcarbamoylase Of The Psychrophilic Bacterium
Moritella Profunda
pdb|2BE7|C Chain C, Crystal Structure Of The Unliganded (T-State) Aspartate
Transcarbamoylase Of The Psychrophilic Bacterium
Moritella Profunda
Length = 326
Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 123/269 (45%), Gaps = 35/269 (13%)
Query: 5 FAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREET-RDAARVLCRYNDIIMARVF 62
F + S RTR+SFET LGG I + + + K+ ET D+ V+ Y D + R
Sbjct: 65 FFEASTRTRLSFETAIQRLGGSVIGFDNAGNTSLAKKGETLADSISVISSYADAFVMRHP 124
Query: 63 GHQDILDLAKFATVPVINGLTDYN-HPCQIMADALTIIEHVGRLEGTKVVYVGDGN--NI 119
++F+ VPVING N HP Q + D +I E GRL+ + +VGD
Sbjct: 125 QEGAARLASEFSNVPVINGGDGSNQHPTQTLLDLFSIYETQGRLDNLNIAFVGDLKYGRT 184
Query: 120 VHSW---LLMASVIPFHFVC----ACPKGF--EPDKETVEKARKAGISKIEITNDPKEVV 170
VHS L FHF+ A P+ E D++ + A A I +EVV
Sbjct: 185 VHSLAQALAKFDGCKFHFIAPDALAMPEYICDELDEQNISYATYASI---------EEVV 235
Query: 171 QGADVVYSDVWASMGQKEEAAYRKQAFQ----GFQVDEFLMKLAGPKAYFMHCLPAERGV 226
DV+Y M + ++ + + +Q GF + + A P +H LP R
Sbjct: 236 PEIDVLY------MTRVQKERFDETEYQHMKAGFILSASSLVHAKPNLKVLHPLP--RVD 287
Query: 227 EVTEGVIEAPYSIVFPQAENRMHAQNAIM 255
E+ V + PY+ F QAEN ++A+ A++
Sbjct: 288 EIATDVDKTPYAYYFQQAENGVYAREALL 316
>pdb|1ML4|A Chain A, The Pala-Liganded Aspartate Transcarbamoylase Catalytic
Subunit From Pyrococcus Abyssi
Length = 308
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 121/265 (45%), Gaps = 8/265 (3%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREETRDAARVLCRYNDIIMA 59
++ +F +PS RTR+SFE+ LGG I + + K E RD + + +Y D+I+
Sbjct: 47 LATLFFEPSTRTRLSFESAMHRLGGAVIGFAEASTSSVKKGESLRDTIKTVEQYCDVIVI 106
Query: 60 RVFGHQDILDLAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN- 117
R A+ A VPVIN G HP Q + D TI + GR++G K+ +GD
Sbjct: 107 RHPKEGAARLAAEVAEVPVINAGDGSNQHPTQTLLDLYTIKKEFGRIDGLKIGLLGDLKY 166
Query: 118 -NIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVV 176
VHS + P+ + VE+ R+ G+ +E T ++V+ DV+
Sbjct: 167 GRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTT-LEDVIGKLDVL 225
Query: 177 YSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAP 236
Y +E Y K +QV+ +++ A + MH LP R E+ V
Sbjct: 226 YVTRIQKERFPDEQEYLK-VKGSYQVNLKVLEKAKDELRIMHPLP--RVDEIHPEVDNTK 282
Query: 237 YSIVFPQAENRMHAQNAIMLHALGL 261
++I F Q N + + A++ LG+
Sbjct: 283 HAIYFRQVFNGVPVRMALLALVLGV 307
>pdb|2G7M|X Chain X, Crystal Structure Of B. Fragilis N-Succinylornithine
Transcarbamylase P90e Mutant Complexed With Carbamoyl
Phosphate And N-Acetylnorvaline
pdb|2G7M|Y Chain Y, Crystal Structure Of B. Fragilis N-Succinylornithine
Transcarbamylase P90e Mutant Complexed With Carbamoyl
Phosphate And N-Acetylnorvaline
pdb|2G7M|Z Chain Z, Crystal Structure Of B. Fragilis N-Succinylornithine
Transcarbamylase P90e Mutant Complexed With Carbamoyl
Phosphate And N-Acetylnorvaline
pdb|2G7M|C Chain C, Crystal Structure Of B. Fragilis N-Succinylornithine
Transcarbamylase P90e Mutant Complexed With Carbamoyl
Phosphate And N-Acetylnorvaline
pdb|2G7M|D Chain D, Crystal Structure Of B. Fragilis N-Succinylornithine
Transcarbamylase P90e Mutant Complexed With Carbamoyl
Phosphate And N-Acetylnorvaline
pdb|2G7M|E Chain E, Crystal Structure Of B. Fragilis N-Succinylornithine
Transcarbamylase P90e Mutant Complexed With Carbamoyl
Phosphate And N-Acetylnorvaline
Length = 338
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 116/280 (41%), Gaps = 53/280 (18%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMG---------------KREETRDAA 47
MIF S+RTR+S + LG + I L DI G K E +A
Sbjct: 61 MIFFNSSLRTRLSTQKAALNLGMNVIVL---DINQGAWKLETERGVIMDGDKEEHLLEAI 117
Query: 48 RVLCRYNDIIMARVFGHQD----------ILDLAKFATVPVINGLTDYNHPCQIMADALT 97
V+ Y DII R F + I + + PV + HP Q AD +T
Sbjct: 118 PVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLIT 177
Query: 98 IIEHVGRLEGTKVVYVGDGN---------NIVHSWLLMASVIPFHFVCACPKGFEPDKET 148
I E + KVV + N W+ + + FV P+G+E D +
Sbjct: 178 I-EEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWM---NATDYEFVITHPEGYELDPKF 233
Query: 149 VEKARKAGISKIEITNDPKEVVQGADVVYSDVWAS-MGQKEEAAYRKQAFQGFQVDEFLM 207
V AR + D + +GAD +Y+ WA+ +G + + V + M
Sbjct: 234 VGNAR--------VEYDQMKAFEGADFIYAKNWAAYLGDNYGQILSTD--RNWTVGDRQM 283
Query: 208 KLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENR 247
+ AYFMHCLP R + VT+ VIE+P SIV P+A NR
Sbjct: 284 AVTN-NAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANR 322
>pdb|1JS1|X Chain X, Crystal Structure Of A New Transcarbamylase From The
Anaerobic Bacterium Bacteroides Fragilis At 2.0 A
Resolution
pdb|1JS1|Y Chain Y, Crystal Structure Of A New Transcarbamylase From The
Anaerobic Bacterium Bacteroides Fragilis At 2.0 A
Resolution
pdb|1JS1|Z Chain Z, Crystal Structure Of A New Transcarbamylase From The
Anaerobic Bacterium Bacteroides Fragilis At 2.0 A
Resolution
Length = 324
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 114/279 (40%), Gaps = 51/279 (18%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMG---------------KREETRDAA 47
MIF S+RTR+S + LG + I L DI G K E +A
Sbjct: 41 MIFFNSSLRTRLSTQKAALNLGMNVIVL---DINQGAWKLETERGVIMDGDKPEHLLEAI 97
Query: 48 RVLCRYNDIIMARVFGHQD----------ILDLAKFATVPVINGLTDYNHPCQIMADALT 97
V+ Y DII R F + I + + PV + HP Q AD +T
Sbjct: 98 PVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLIT 157
Query: 98 IIEHVGRLEGTKVVYVGDGN---------NIVHSWLLMASVIPFHFVCACPKGFEPDKET 148
I E + KVV + N W+ + + FV P+G+E D +
Sbjct: 158 I-EEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWM---NATDYEFVITHPEGYELDPKF 213
Query: 149 VEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMK 208
V AR + D + +GAD +Y+ WA+ + + V + M
Sbjct: 214 VGNAR--------VEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTD-RNWTVGDRQMA 264
Query: 209 LAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENR 247
+ AYFMHCLP R + VT+ VIE+P SIV P+A NR
Sbjct: 265 VTN-NAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANR 302
>pdb|2FG6|X Chain X, N-Succinyl-L-Ornithine Transcarbamylase From B. Fragilis
Complexed With Sulfate And N-Succinyl-L-Norvaline
pdb|2FG6|Y Chain Y, N-Succinyl-L-Ornithine Transcarbamylase From B. Fragilis
Complexed With Sulfate And N-Succinyl-L-Norvaline
pdb|2FG6|Z Chain Z, N-Succinyl-L-Ornithine Transcarbamylase From B. Fragilis
Complexed With Sulfate And N-Succinyl-L-Norvaline
pdb|2FG6|C Chain C, N-Succinyl-L-Ornithine Transcarbamylase From B. Fragilis
Complexed With Sulfate And N-Succinyl-L-Norvaline
pdb|2FG6|D Chain D, N-Succinyl-L-Ornithine Transcarbamylase From B. Fragilis
Complexed With Sulfate And N-Succinyl-L-Norvaline
pdb|2FG6|E Chain E, N-Succinyl-L-Ornithine Transcarbamylase From B. Fragilis
Complexed With Sulfate And N-Succinyl-L-Norvaline
pdb|2FG7|X Chain X, N-Succinyl-L-Ornithine Transcarbamylase From B. Fragilis
Complexed With Carbamoyl Phosphate And
N-Succinyl-L-Norvaline
pdb|2FG7|Y Chain Y, N-Succinyl-L-Ornithine Transcarbamylase From B. Fragilis
Complexed With Carbamoyl Phosphate And
N-Succinyl-L-Norvaline
pdb|2FG7|Z Chain Z, N-Succinyl-L-Ornithine Transcarbamylase From B. Fragilis
Complexed With Carbamoyl Phosphate And
N-Succinyl-L-Norvaline
pdb|2FG7|C Chain C, N-Succinyl-L-Ornithine Transcarbamylase From B. Fragilis
Complexed With Carbamoyl Phosphate And
N-Succinyl-L-Norvaline
pdb|2FG7|D Chain D, N-Succinyl-L-Ornithine Transcarbamylase From B. Fragilis
Complexed With Carbamoyl Phosphate And
N-Succinyl-L-Norvaline
pdb|2FG7|E Chain E, N-Succinyl-L-Ornithine Transcarbamylase From B. Fragilis
Complexed With Carbamoyl Phosphate And
N-Succinyl-L-Norvaline
Length = 338
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 116/280 (41%), Gaps = 53/280 (18%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMG---------------KREETRDAA 47
MIF S+RTR+S + LG + I L DI G K E +A
Sbjct: 61 MIFFNSSLRTRLSTQKAALNLGMNVIVL---DINQGAWKLETERGVIMDGDKPEHLLEAI 117
Query: 48 RVLCRYNDIIMARVFGHQD----------ILDLAKFATVPVINGLTDYNHPCQIMADALT 97
V+ Y DII R F + I + + PV + HP Q AD +T
Sbjct: 118 PVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLIT 177
Query: 98 IIEHVGRLEGTKVVYVGDGN---------NIVHSWLLMASVIPFHFVCACPKGFEPDKET 148
I E + KVV + N W+ + + FV P+G+E D +
Sbjct: 178 I-EEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWM---NATDYEFVITHPEGYELDPKF 233
Query: 149 VEKARKAGISKIEITNDPKEVVQGADVVYSDVWAS-MGQKEEAAYRKQAFQGFQVDEFLM 207
V AR + D + +GAD +Y+ WA+ +G + + V + M
Sbjct: 234 VGNAR--------VEYDQMKAFEGADFIYAKNWAAYLGDNYGQILSTD--RNWTVGDRQM 283
Query: 208 KLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENR 247
+ AYFMHCLP R + VT+ VIE+P SIV P+A NR
Sbjct: 284 AVTN-NAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANR 322
>pdb|2RGW|A Chain A, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|2RGW|B Chain B, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|2RGW|C Chain C, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|2RGW|D Chain D, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|2RGW|E Chain E, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|2RGW|F Chain F, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|3E2P|A Chain A, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|B Chain B, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|C Chain C, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|D Chain D, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|E Chain E, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|F Chain F, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|I Chain I, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|J Chain J, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|K Chain K, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|L Chain L, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|M Chain M, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|N Chain N, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|4EKN|B Chain B, Structure Of The Catalytic Chain Of Methanococcus
Jannaschii Aspartate Transcarbamoylase In A Hexagonal
Crystal Form
Length = 306
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 13/166 (7%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQ---MGKREETRDAARVLCRYNDII 57
++ +F +PS RTR+SFET LGG I + D++ + K E D RV+ Y DII
Sbjct: 43 LATVFYEPSTRTRLSFETAMKRLGGEVITMT--DLKSSSVAKGESLIDTIRVISGYADII 100
Query: 58 MARVFGHQDILDLAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG 116
+ R ++++ VP+IN G HP Q + D TI+ +GR++G K+ +VGD
Sbjct: 101 VLRHPSEGAARLASEYSQVPIINAGDGSNQHPTQTLLDLYTIMREIGRIDGIKIAFVGDL 160
Query: 117 N--NIVHSWLLMASV---IPFHFVCACPKGFEPDKETVEKARKAGI 157
VHS + S+ + +FV PK K+ +E + I
Sbjct: 161 KYGRTVHSLVYALSLFENVEMYFV--SPKELRLPKDIIEDLKAKNI 204
>pdb|2YFK|A Chain A, Crystal Structure Of A Putative Transcarbamoylase From
Enterococcus Faecalis
pdb|2YFK|B Chain B, Crystal Structure Of A Putative Transcarbamoylase From
Enterococcus Faecalis
Length = 418
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 108/288 (37%), Gaps = 62/288 (21%)
Query: 4 IFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR--- 60
+F S RTR SF + +LLG L Q+ E R+ A ++ DII R
Sbjct: 66 LFRDNSTRTRFSFASACNLLGLEVQDLDEGKSQISHGETVRETANMISFMADIIGIRDDM 125
Query: 61 ------VFGH------QDILDLAKFATVP-VINGLTDYNHPCQIMADALTIIEHVGRLEG 107
+ H Q+ P ++N D +HP Q MADAL +I G +E
Sbjct: 126 YIGKGNAYMHEVSESVQEGYKDGVLEQRPTLVNLQCDIDHPTQAMADALHLIHEFGGIEN 185
Query: 108 TKVVYVGDGNNIVHSWLLMASV----------------IPFHFVCACPKGFE--PDKETV 149
K G + +W S + V A P+G+E P+ E V
Sbjct: 186 LK------GKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIMPEVEEV 239
Query: 150 EKARKAGI-SKIEITNDPKEVVQGADVVYSDVWASMGQKE-------------------E 189
K A TN E + ADVVY WA E E
Sbjct: 240 AKKNAAEFGGNFTKTNSMAEAFKDADVVYPKSWAPFAAMEKRTELYGNGDQAGIDQLEQE 299
Query: 190 AAYRKQAFQGFQVDEFLMKLAGP-KAYFMHCLPAE-RGVEVTEGVIEA 235
+ + + ++ E LMK KA +MHCLPA+ GV EG +EA
Sbjct: 300 LLSQNKKHKDWECTEELMKTTKDGKALYMHCLPADITGVSCEEGEVEA 347
>pdb|3LXM|A Chain A, 2.00 Angstrom Resolution Crystal Structure Of A Catalytic
Subunit Of An Aspartate Carbamoyltransferase (Pyrb) From
Yersinia Pestis Co92
pdb|3LXM|B Chain B, 2.00 Angstrom Resolution Crystal Structure Of A Catalytic
Subunit Of An Aspartate Carbamoyltransferase (Pyrb) From
Yersinia Pestis Co92
pdb|3LXM|C Chain C, 2.00 Angstrom Resolution Crystal Structure Of A Catalytic
Subunit Of An Aspartate Carbamoyltransferase (Pyrb) From
Yersinia Pestis Co92
Length = 335
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 110/261 (42%), Gaps = 18/261 (6%)
Query: 5 FAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREET-RDAARVLCRYNDIIMARVF 62
F + S RTR+SFET LG + + + +GK+ ET D V+ Y D I+ R
Sbjct: 73 FFEASTRTRLSFETSIHRLGASVVGFSDSSNTSLGKKGETLADTMSVISTYVDAIVMRHP 132
Query: 63 GHQDILDLAKFA-TVPVINGLTDYN-HPCQIMADALTIIEHVGRLEGTKVVYVGDGN--N 118
A+F+ VP++N N HP Q + D TI E GRL+ + VGD
Sbjct: 133 QEGASRLAAQFSGNVPIVNAGDGANQHPTQTLLDLFTIQETQGRLDNINIAMVGDLKYGR 192
Query: 119 IVHSWLLMASVIPF---HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADV 175
VHS L ++ F HF P ++ + I + + +EVV D+
Sbjct: 193 TVHS--LTQALAKFNGNHFFFIAPDALAMPAYILQMLEEKEI-EYSLHESLEEVVPELDI 249
Query: 176 VY-SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIE 234
+Y + V E A K F D L G + P R E+T V +
Sbjct: 250 LYMTRVQKERLDPSEYANVKAQFILRSSD-----LTGARDNLKVLHPLPRIDEITTDVDK 304
Query: 235 APYSIVFPQAENRMHAQNAIM 255
PY+ F QA N + A+ A++
Sbjct: 305 TPYAYYFQQAGNGIFARQALL 325
>pdb|2A0F|A Chain A, Structure Of D236a Mutant E. Coli Aspartate
Transcarbamoylase In Presence Of Phosphonoacetamide At
2.90 A Resolution
pdb|2A0F|C Chain C, Structure Of D236a Mutant E. Coli Aspartate
Transcarbamoylase In Presence Of Phosphonoacetamide At
2.90 A Resolution
pdb|2HSE|A Chain A, Structure Of D236a E. Coli Aspartate Transcarbamoylase In
The Presence Of Phosphonoacetamide And L-Aspartate At
2.60 A Resolution
pdb|2HSE|C Chain C, Structure Of D236a E. Coli Aspartate Transcarbamoylase In
The Presence Of Phosphonoacetamide And L-Aspartate At
2.60 A Resolution
Length = 310
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 112/264 (42%), Gaps = 24/264 (9%)
Query: 5 FAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREET-RDAARVLCRYNDIIMARVF 62
F + S RTR+SFET LG + + + +GK+ ET D V+ Y D I+ R
Sbjct: 48 FFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMR-- 105
Query: 63 GHQDILDLAKFAT-----VPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG 116
A+ AT VPV+N G HP Q + D TI E GRL+ V VGD
Sbjct: 106 --HPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDL 163
Query: 117 N--NIVHSWLLMASVIPF---HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQ 171
VHS L ++ F F P + ++ + GI+ + + +EV+
Sbjct: 164 KYGRTVHS--LTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIA-WSLHSSIEEVMA 220
Query: 172 GADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEG 231
D++Y + QKE A + A Q L KA P R E+
Sbjct: 221 EVDILY----MTRVQKERLAPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATD 276
Query: 232 VIEAPYSIVFPQAENRMHAQNAIM 255
V + P++ F QA N + A+ A++
Sbjct: 277 VDKTPHAWYFQQAGNGIFARQALL 300
>pdb|4E2F|I Chain I, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|K Chain K, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|G Chain G, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|C Chain C, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|A Chain A, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|E Chain E, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
Length = 310
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 111/264 (42%), Gaps = 24/264 (9%)
Query: 5 FAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREET-RDAARVLCRYNDIIMARVF 62
F + S RTR+SFET LG + + + +GK+ ET D V+ Y D I+ R
Sbjct: 48 FFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMR-- 105
Query: 63 GHQDILDLAKFAT-----VPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGD- 115
A+ AT VPV+N G HP Q + D TI E GRL+ V VGD
Sbjct: 106 --HPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDL 163
Query: 116 -GNNIVHSWLLMASVIPF---HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQ 171
VHS L ++ F F P + ++ + GI+ + + +EV+
Sbjct: 164 EYGRTVHS--LTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIA-WSLHSSIEEVMA 220
Query: 172 GADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEG 231
D++Y + QKE K A Q L KA P R E+
Sbjct: 221 EVDILY----MTRVQKERLDPSKYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATD 276
Query: 232 VIEAPYSIVFPQAENRMHAQNAIM 255
V + P++ F QA N + A+ A++
Sbjct: 277 VDKTPHAWYFQQAGNGIFARQALL 300
>pdb|1SKU|A Chain A, E. Coli Aspartate Transcarbamylase 240's Loop Mutant
(K244n)
pdb|1SKU|C Chain C, E. Coli Aspartate Transcarbamylase 240's Loop Mutant
(K244n)
Length = 310
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 111/264 (42%), Gaps = 24/264 (9%)
Query: 5 FAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREET-RDAARVLCRYNDIIMARVF 62
F + S RTR+SFET LG + + + +GK+ ET D V+ Y D I+ R
Sbjct: 48 FFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMR-- 105
Query: 63 GHQDILDLAKFAT-----VPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG 116
A+ AT VPV+N G HP Q + D TI E GRL+ V VGD
Sbjct: 106 --HPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDL 163
Query: 117 N--NIVHSWLLMASVIPF---HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQ 171
VHS L ++ F F P + ++ + GI+ + + +EV+
Sbjct: 164 KYGRTVHS--LTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIA-WSLHSSIEEVMA 220
Query: 172 GADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEG 231
D++Y + QKE + A Q L KA P R E+
Sbjct: 221 EVDILY----MTRVQKERLDPSEYANVNAQFVLRASDLHNAKANMKVLHPLPRVDEIATD 276
Query: 232 VIEAPYSIVFPQAENRMHAQNAIM 255
V + P++ F QA N + A+ A++
Sbjct: 277 VDKTPHAWYFQQAGNGIFARQALL 300
>pdb|1EZZ|A Chain A, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The T-State
pdb|1EZZ|C Chain C, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The T-State
pdb|1F1B|A Chain A, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The R-state In The Presence Of
N-phosphonacetyl-l-aspartate
pdb|1F1B|C Chain C, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The R-state In The Presence Of
N-phosphonacetyl-l-aspartate
Length = 310
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 111/264 (42%), Gaps = 24/264 (9%)
Query: 5 FAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREET-RDAARVLCRYNDIIMARVF 62
F + S RTR+SFET LG + + + +GK+ ET D V+ Y D I+ R
Sbjct: 48 FFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMR-- 105
Query: 63 GHQDILDLAKFAT-----VPVINGLTDYN-HPCQIMADALTIIEHVGRLEGTKVVYVGDG 116
A+ AT VPV+N N HP Q + D TI E GRL+ V VGD
Sbjct: 106 --HPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDL 163
Query: 117 N--NIVHSWLLMASVIPF---HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQ 171
VHS L ++ F F P + ++ + GI+ + + +EV+
Sbjct: 164 KYGRTVHS--LTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIA-WSLHSSIEEVMA 220
Query: 172 GADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEG 231
D++Y + QKE + A Q L KA P R E+
Sbjct: 221 EVDILY----MTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLARVDEIATD 276
Query: 232 VIEAPYSIVFPQAENRMHAQNAIM 255
V + P++ F QA N + A+ A++
Sbjct: 277 VDKTPHAWYFQQAGNGIFARQALL 300
>pdb|1EKX|A Chain A, The Isolated, Unregulated Catalytic Trimer Of Aspartate
Transcarbamoylase Complexed With Bisubstrate Analog Pala
(N-(Phosphonacetyl)-L-Aspartate)
pdb|1EKX|B Chain B, The Isolated, Unregulated Catalytic Trimer Of Aspartate
Transcarbamoylase Complexed With Bisubstrate Analog Pala
(N-(Phosphonacetyl)-L-Aspartate)
pdb|1EKX|C Chain C, The Isolated, Unregulated Catalytic Trimer Of Aspartate
Transcarbamoylase Complexed With Bisubstrate Analog Pala
(N-(Phosphonacetyl)-L-Aspartate)
Length = 311
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 111/264 (42%), Gaps = 24/264 (9%)
Query: 5 FAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREET-RDAARVLCRYNDIIMARVF 62
F + S RTR+SFET LG + + + +GK+ ET D V+ Y D I+ R
Sbjct: 49 FFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMR-- 106
Query: 63 GHQDILDLAKFAT-----VPVINGLTDYN-HPCQIMADALTIIEHVGRLEGTKVVYVGDG 116
A+ AT VPV+N N HP Q + D TI E GRL+ V VGD
Sbjct: 107 --HPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDL 164
Query: 117 N--NIVHSWLLMASVIPF---HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQ 171
VHS L ++ F F P + ++ + GI+ + + +EV+
Sbjct: 165 KYGRTVHS--LTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIA-WSLHSSIEEVMA 221
Query: 172 GADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEG 231
D++Y + QKE + A Q L KA P R E+
Sbjct: 222 EVDILY----MTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATD 277
Query: 232 VIEAPYSIVFPQAENRMHAQNAIM 255
V + P++ F QA N + A+ A++
Sbjct: 278 VDKTPHAWYFQQAGNGIFARQALL 301
>pdb|9ATC|A Chain A, Atcase Y165f Mutant
Length = 310
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 111/264 (42%), Gaps = 24/264 (9%)
Query: 5 FAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREET-RDAARVLCRYNDIIMARVF 62
F + S RTR+SFET LG + + + +GK+ ET D V+ Y D I+ R
Sbjct: 48 FFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMR-- 105
Query: 63 GHQDILDLAKFAT-----VPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG 116
A+ AT VPV+N G HP Q + D TI E GRL+ V VGD
Sbjct: 106 --HPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDL 163
Query: 117 N--NIVHSWLLMASVIPF---HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQ 171
VHS L ++ F F P + ++ + GI+ + + +EV+
Sbjct: 164 KFGRTVHS--LTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIA-WSLHSSIEEVMA 220
Query: 172 GADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEG 231
D++Y + QKE + A Q L KA P R E+
Sbjct: 221 EVDILY----MTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATD 276
Query: 232 VIEAPYSIVFPQAENRMHAQNAIM 255
V + P++ F QA N + A+ A++
Sbjct: 277 VDKTPHAWYFQQAGNGIFARQALL 300
>pdb|1RAA|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAA|C Chain C, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAB|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAB|C Chain C, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAC|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAC|C Chain C, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAD|A Chain A, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAD|C Chain C, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAE|A Chain A, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAE|C Chain C, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAF|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAF|C Chain C, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAG|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAG|C Chain C, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAH|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAH|C Chain C, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAI|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAI|C Chain C, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|3CSU|A Chain A, Catalytic Trimer Of Escherichia Coli Aspartate
Transcarbamoylase
pdb|3CSU|B Chain B, Catalytic Trimer Of Escherichia Coli Aspartate
Transcarbamoylase
pdb|3CSU|C Chain C, Catalytic Trimer Of Escherichia Coli Aspartate
Transcarbamoylase
pdb|1Q95|A Chain A, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|B Chain B, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|C Chain C, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|D Chain D, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|E Chain E, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|F Chain F, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|A Chain A, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|B Chain B, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|C Chain C, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|D Chain D, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|E Chain E, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|F Chain F, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0C|A Chain A, Products In The T State Of Aspartate Transcarbamylase:
Crystal Structure Of The Phosphate And
N-Carbamyl-L-Aspartate Ligated Enzyme
pdb|1R0C|G Chain G, Products In The T State Of Aspartate Transcarbamylase:
Crystal Structure Of The Phosphate And
N-Carbamyl-L-Aspartate Ligated Enzyme
pdb|1ZA1|A Chain A, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of Ctp At 2.20 A Resolution
pdb|1ZA1|C Chain C, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of Ctp At 2.20 A Resolution
pdb|1ZA2|A Chain A, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of Ctp, Carbamoyl Phosphate At 2.50 A
Resolution
pdb|1ZA2|C Chain C, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of Ctp, Carbamoyl Phosphate At 2.50 A
Resolution
pdb|2AIR|A Chain A, T-State Active Site Of Aspartate Transcarbamylase:crystal
Structure Of The Carbamyl Phosphate And L-Alanosine
Ligated Enzyme
pdb|2AIR|G Chain G, T-State Active Site Of Aspartate Transcarbamylase:crystal
Structure Of The Carbamyl Phosphate And L-Alanosine
Ligated Enzyme
pdb|2FZC|A Chain A, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.10 Resolution
pdb|2FZC|C Chain C, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.10 Resolution
pdb|2FZG|A Chain A, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.25 Resolution
pdb|2FZG|C Chain C, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.25 Resolution
pdb|2FZK|A Chain A, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.50 Resolution
pdb|2FZK|C Chain C, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.50 Resolution
pdb|2H3E|A Chain A, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of N-Phosphonacetyl-L-Isoasparagine At
2.3a Resolution
pdb|2H3E|C Chain C, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of N-Phosphonacetyl-L-Isoasparagine At
2.3a Resolution
pdb|2IPO|A Chain A, E. Coli Aspartate Transcarbamoylase Complexed With N-
Phosphonacetyl-l-asparagine
pdb|2IPO|C Chain C, E. Coli Aspartate Transcarbamoylase Complexed With N-
Phosphonacetyl-l-asparagine
pdb|2QG9|A Chain A, Structure Of A Regulatory Subunit Mutant D19a Of Atcase
From E. Coli
pdb|2QG9|C Chain C, Structure Of A Regulatory Subunit Mutant D19a Of Atcase
From E. Coli
pdb|2QGF|A Chain A, Structure Of Regulatory Chain Mutant H20a Of Asparate
Transcarbamoylase From E. Coli
pdb|2QGF|C Chain C, Structure Of Regulatory Chain Mutant H20a Of Asparate
Transcarbamoylase From E. Coli
pdb|3D7S|A Chain A, Crystal Structure Of Wild-Type E. Coli Asparate
Transcarbamoylase At Ph 8.5 At 2.80 A Resolution
pdb|3D7S|C Chain C, Crystal Structure Of Wild-Type E. Coli Asparate
Transcarbamoylase At Ph 8.5 At 2.80 A Resolution
pdb|4F04|A Chain A, A Second Allosteric Site In E. Coli Aspartate
Transcarbamoylase: R- State Atcase With Utp Bound
pdb|4F04|C Chain C, A Second Allosteric Site In E. Coli Aspartate
Transcarbamoylase: R- State Atcase With Utp Bound
pdb|4FYV|A Chain A, Aspartate Transcarbamoylase Complexed With Dctp
pdb|4FYV|C Chain C, Aspartate Transcarbamoylase Complexed With Dctp
pdb|4FYW|A Chain A, E. Coli Aspartate Transcarbamoylase Complexed With Ctp
pdb|4FYW|C Chain C, E. Coli Aspartate Transcarbamoylase Complexed With Ctp
pdb|4FYX|A Chain A, E. Coli Aspartate Transcarbamoylase Complexed With Dctp,
Utp, And Mg2+
pdb|4FYX|C Chain C, E. Coli Aspartate Transcarbamoylase Complexed With Dctp,
Utp, And Mg2+
pdb|4FYY|A Chain A, E. Coli Aspartate Transcarbamoylase Complexed With Ctp,
Utp, And Mg2+
pdb|4FYY|C Chain C, E. Coli Aspartate Transcarbamoylase Complexed With Ctp,
Utp, And Mg2+
Length = 310
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 111/264 (42%), Gaps = 24/264 (9%)
Query: 5 FAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREET-RDAARVLCRYNDIIMARVF 62
F + S RTR+SFET LG + + + +GK+ ET D V+ Y D I+ R
Sbjct: 48 FFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMR-- 105
Query: 63 GHQDILDLAKFAT-----VPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG 116
A+ AT VPV+N G HP Q + D TI E GRL+ V VGD
Sbjct: 106 --HPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDL 163
Query: 117 N--NIVHSWLLMASVIPF---HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQ 171
VHS L ++ F F P + ++ + GI+ + + +EV+
Sbjct: 164 KYGRTVHS--LTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIA-WSLHSSIEEVMA 220
Query: 172 GADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEG 231
D++Y + QKE + A Q L KA P R E+
Sbjct: 221 EVDILY----MTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATD 276
Query: 232 VIEAPYSIVFPQAENRMHAQNAIM 255
V + P++ F QA N + A+ A++
Sbjct: 277 VDKTPHAWYFQQAGNGIFARQALL 300
>pdb|1I5O|A Chain A, Crystal Structure Of Mutant R105a Of E. Coli Aspartate
Transcarbamoylase
pdb|1I5O|C Chain C, Crystal Structure Of Mutant R105a Of E. Coli Aspartate
Transcarbamoylase
pdb|1GQ3|A Chain A, Structure Of The R105a Mutant Catalytic Trimer Of
Escherichia Coli Aspartate Transcarbamoylase At 2.0-A
Resolution
pdb|1GQ3|B Chain B, Structure Of The R105a Mutant Catalytic Trimer Of
Escherichia Coli Aspartate Transcarbamoylase At 2.0-A
Resolution
pdb|1GQ3|C Chain C, Structure Of The R105a Mutant Catalytic Trimer Of
Escherichia Coli Aspartate Transcarbamoylase At 2.0-A
Resolution
Length = 310
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 109/260 (41%), Gaps = 16/260 (6%)
Query: 5 FAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREET-RDAARVLCRYND-IIMARV 61
F + S RTR+SFET LG + + + +GK+ ET D V+ Y D I+MA
Sbjct: 48 FFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMAHP 107
Query: 62 FGHQDILDLAKFATVPVINGLTDYN-HPCQIMADALTIIEHVGRLEGTKVVYVGDGN--N 118
L VPV+N N HP Q + D TI E GRL+ V VGD
Sbjct: 108 QEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGR 167
Query: 119 IVHSWLLMASVIPF---HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADV 175
VHS L ++ F F P + ++ + GI+ + + +EV+ D+
Sbjct: 168 TVHS--LTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIA-WSLHSSIEEVMAEVDI 224
Query: 176 VYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEA 235
+Y + QKE + A Q L KA P R E+ V +
Sbjct: 225 LY----MTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKT 280
Query: 236 PYSIVFPQAENRMHAQNAIM 255
P++ F QA N + A+ A++
Sbjct: 281 PHAWYFQQAGNGIFARQALL 300
>pdb|1TTH|A Chain A, Aspartate Transcarbamoylase Catalytic Chain Mutant
Glu50ala Complexed With N-(Phosphonacetyl-L-Aspartate)
(Pala)
pdb|1TTH|C Chain C, Aspartate Transcarbamoylase Catalytic Chain Mutant
Glu50ala Complexed With N-(Phosphonacetyl-L-Aspartate)
(Pala)
pdb|1TU0|A Chain A, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide
pdb|1TU0|C Chain C, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide
pdb|1TUG|A Chain A, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide, Malonate, And
Cytidine-5- Prime-Triphosphate (Ctp)
pdb|1TUG|C Chain C, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide, Malonate, And
Cytidine-5- Prime-Triphosphate (Ctp)
Length = 310
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 110/264 (41%), Gaps = 24/264 (9%)
Query: 5 FAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREET-RDAARVLCRYNDIIMARVF 62
F S RTR+SFET LG + + + +GK+ ET D V+ Y D I+ R
Sbjct: 48 FFAASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMR-- 105
Query: 63 GHQDILDLAKFAT-----VPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG 116
A+ AT VPV+N G HP Q + D TI E GRL+ V VGD
Sbjct: 106 --HPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDL 163
Query: 117 N--NIVHSWLLMASVIPF---HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQ 171
VHS L ++ F F P + ++ + GI+ + + +EV+
Sbjct: 164 KYGRTVHS--LTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIA-WSLHSSIEEVMA 220
Query: 172 GADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEG 231
D++Y + QKE + A Q L KA P R E+
Sbjct: 221 EVDILY----MTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATD 276
Query: 232 VIEAPYSIVFPQAENRMHAQNAIM 255
V + P++ F QA N + A+ A++
Sbjct: 277 VDKTPHAWYFQQAGNGIFARQALL 300
>pdb|1D09|A Chain A, Aspartate Transcarbamoylase Complexed With
N-Phosphonacetyl-L- Aspartate (Pala)
pdb|1D09|C Chain C, Aspartate Transcarbamoylase Complexed With
N-Phosphonacetyl-L- Aspartate (Pala)
Length = 310
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 111/264 (42%), Gaps = 24/264 (9%)
Query: 5 FAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREET-RDAARVLCRYNDIIMARVF 62
F + S RTR+SFET LG + + + +GK+ ET D V+ Y D I+ R
Sbjct: 48 FFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMR-- 105
Query: 63 GHQDILDLAKFAT-----VPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG 116
A+ AT VPV+N G HP Q + D TI + GRL+ V VGD
Sbjct: 106 --HPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQQTQGRLDNLHVAMVGDL 163
Query: 117 N--NIVHSWLLMASVIPF---HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQ 171
VHS L ++ F F P + ++ + GI+ + + +EV+
Sbjct: 164 KYGRTVHS--LTQALAKFDGNRFYFIAPDALAMPEYILDMLDEKGIA-WSLHSSIEEVMA 220
Query: 172 GADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEG 231
D++Y + QKE + A Q L KA P R E+
Sbjct: 221 EVDILY----MTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATD 276
Query: 232 VIEAPYSIVFPQAENRMHAQNAIM 255
V + P++ F QA N + A+ A++
Sbjct: 277 VDKTPHAWYFQQAGNGIFARQALL 300
>pdb|3MPU|A Chain A, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3MPU|C Chain C, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3MPU|E Chain E, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3NPM|A Chain A, Crystal Structure Of The C47aA241C DISULFIDE-Linked C6
Aspartate Transcarbamoylase Enzyme
Length = 310
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 115/267 (43%), Gaps = 30/267 (11%)
Query: 5 FAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREET-RDAARVLCRYNDIIMARVF 62
F + S RTR+SFET LG + + + +GK+ ET D V+ Y D I+ R
Sbjct: 48 FFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMR-- 105
Query: 63 GHQDILDLAKFAT-----VPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG 116
A+ AT VPV+N G HP Q + D TI E GRL+ V VGD
Sbjct: 106 --HPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDL 163
Query: 117 N--NIVHSWLLMASVIPF---HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQ 171
VHS L ++ F F P + ++ + GI+ + + +EV+
Sbjct: 164 KYGRTVHS--LTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIA-WSLHSSIEEVMA 220
Query: 172 GADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMK---LAGPKAYFMHCLPAERGVEV 228
D++Y M + ++ + + +F+++ L KA P R E+
Sbjct: 221 EVDILY------MTRVQKERLDPSEYCNVKA-QFVLRASDLHNAKANMKVLHPLPRVDEI 273
Query: 229 TEGVIEAPYSIVFPQAENRMHAQNAIM 255
V + P++ F QA N + A+ A++
Sbjct: 274 ATDVDKTPHAWYFQQAGNGIFARQALL 300
>pdb|3D6N|B Chain B, Crystal Structure Of Aquifex Dihydroorotase Activated By
Aspartate Transcarbamoylase
Length = 291
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 117/269 (43%), Gaps = 39/269 (14%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVL--CRYNDIIMAR 60
+ F++PS RTR+SFE LG + + K E D + ++ ++
Sbjct: 39 LFFSEPSTRTRLSFEKAARELGIETYLVSGSESSTVKGESFFDTLKTFEGLGFDYVVFRV 98
Query: 61 VFGHQDILDLAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNI 119
F ++ K + ++N G + HP Q + D TI EH G ++ +V+YVGD I
Sbjct: 99 PFVFFPYKEIVKSLNLRLVNAGDGTHQHPSQGLIDFFTIKEHFGEVKDLRVLYVGD---I 155
Query: 120 VHSWLLMASVIPFHFVCA----C-PKGFEPDKETVEKARKAGISKIEITNDPKEVVQGAD 174
HS + + + A C PK P R + K+++ +D + + AD
Sbjct: 156 KHSRVFRSGAPLLNMFGAKIGVCGPKTLIP--------RDVEVFKVDVFDDVDKGIDWAD 207
Query: 175 VVYSDVWASMG---QKE-----EAAYRKQAFQGFQVDEF-LMKLAGPKAYFMHCLPAERG 225
VV +W + QKE E++Y KQ G + F +KL +MH P R
Sbjct: 208 VV---IWLRLQKERQKENYIPSESSYFKQF--GLTKERFEKVKL------YMHPGPVNRN 256
Query: 226 VEVTEGVIEAPYSIVFPQAENRMHAQNAI 254
V++ ++ S++ Q +N + + AI
Sbjct: 257 VDIDHELVYTEKSLIQEQVKNGIPVRKAI 285
>pdb|1XJW|A Chain A, The Structure Of E. Coli Aspartate Transcarbamoylase Q137a
Mutant In The R-State
pdb|1XJW|C Chain C, The Structure Of E. Coli Aspartate Transcarbamoylase Q137a
Mutant In The R-State
Length = 310
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 110/264 (41%), Gaps = 24/264 (9%)
Query: 5 FAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREET-RDAARVLCRYNDIIMARVF 62
F + S RTR+SFET LG + + + +GK+ ET D V+ Y D I+ R
Sbjct: 48 FFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMR-- 105
Query: 63 GHQDILDLAKFAT-----VPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG 116
A+ AT VPV+N G HP + D TI E GRL+ V VGD
Sbjct: 106 --HPQEGAARLATEFSGNVPVLNAGDGSNQHPTATLLDLFTIQETQGRLDNLHVAMVGDL 163
Query: 117 N--NIVHSWLLMASVIPF---HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQ 171
VHS L ++ F F P + ++ + GI+ + + +EV+
Sbjct: 164 KYGRTVHS--LTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIA-WSLHSSIEEVMA 220
Query: 172 GADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEG 231
D++Y + QKE + A Q L KA P R E+
Sbjct: 221 EVDILY----MTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATD 276
Query: 232 VIEAPYSIVFPQAENRMHAQNAIM 255
V + P++ F QA N + A+ A++
Sbjct: 277 VDKTPHAWYFQQAGNGIFARQALL 300
>pdb|1AT1|A Chain A, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral PH
pdb|1AT1|C Chain C, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral PH
pdb|2AT1|A Chain A, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral Ph
pdb|2AT1|C Chain C, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral Ph
pdb|3AT1|A Chain A, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral Ph
pdb|3AT1|C Chain C, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral Ph
pdb|4AT1|A Chain A, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|4AT1|C Chain C, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|5AT1|A Chain A, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|5AT1|C Chain C, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|6AT1|A Chain A, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|6AT1|C Chain C, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|7AT1|A Chain A, Crystal Structures Of Aspartate Carbamoyltransferase
Ligated With Phosphonoacetamide, Malonate, And Ctp Or
Atp At 2.8-angstroms Resolution And Neutral P*h
pdb|7AT1|C Chain C, Crystal Structures Of Aspartate Carbamoyltransferase
Ligated With Phosphonoacetamide, Malonate, And Ctp Or
Atp At 2.8-angstroms Resolution And Neutral P*h
pdb|8AT1|A Chain A, Crystal Structures Of Aspartate Carbamoyltransferase
Ligated With Phosphonoacetamide, Malonate, And Ctp Or
Atp At 2.8-Angstroms Resolution And Neutral PH
pdb|8AT1|C Chain C, Crystal Structures Of Aspartate Carbamoyltransferase
Ligated With Phosphonoacetamide, Malonate, And Ctp Or
Atp At 2.8-Angstroms Resolution And Neutral PH
pdb|8ATC|A Chain A, Complex Of N-Phosphonacetyl-L-Aspartate With Aspartate
Carbamoyltransferase. X-Ray Refinement, Analysis Of
Conformational Changes And Catalytic And Allosteric
Mechanisms
pdb|8ATC|C Chain C, Complex Of N-Phosphonacetyl-L-Aspartate With Aspartate
Carbamoyltransferase. X-Ray Refinement, Analysis Of
Conformational Changes And Catalytic And Allosteric
Mechanisms
pdb|1NBE|A Chain A, Aspartate Transcarbamoylase Regulatory Chain Mutant (T82a)
pdb|1NBE|C Chain C, Aspartate Transcarbamoylase Regulatory Chain Mutant (T82a)
Length = 310
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 111/264 (42%), Gaps = 24/264 (9%)
Query: 5 FAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREET-RDAARVLCRYNDIIMARVF 62
F + S RTR+SF+T LG + + + +GK+ ET D V+ Y D I+ R
Sbjct: 48 FFEASTRTRLSFQTSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMR-- 105
Query: 63 GHQDILDLAKFAT-----VPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG 116
A+ AT VPV+N G HP Q + D TI + GRL+ V VGD
Sbjct: 106 --HPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQQTEGRLDNLHVAMVGDL 163
Query: 117 N--NIVHSWLLMASVIPF---HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQ 171
VHS L ++ F F P + ++ + GI+ + + +EV+
Sbjct: 164 KYGRTVHS--LTQALAKFDGNRFYFIAPDALAMPEYILDMLDEKGIA-WSLHSSIEEVMA 220
Query: 172 GADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEG 231
D++Y + QKE + A Q L KA P R E+
Sbjct: 221 EVDILY----MTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATD 276
Query: 232 VIEAPYSIVFPQAENRMHAQNAIM 255
V + P++ F QA N + A+ A++
Sbjct: 277 VDKTPHAWYFQQAGNGIFARQALL 300
>pdb|3R7D|A Chain A, Crystal Structure Of Unliganded Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7D|B Chain B, Crystal Structure Of Unliganded Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7D|C Chain C, Crystal Structure Of Unliganded Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7F|A Chain A, Crystal Structure Of Cp-Bound Aspartate Transcarbamoylase
From Bacillus Subtilis
pdb|3R7F|B Chain B, Crystal Structure Of Cp-Bound Aspartate Transcarbamoylase
From Bacillus Subtilis
pdb|3R7F|C Chain C, Crystal Structure Of Cp-Bound Aspartate Transcarbamoylase
From Bacillus Subtilis
pdb|3R7L|A Chain A, Crystal Structure Of Pala-Bound Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7L|B Chain B, Crystal Structure Of Pala-Bound Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7L|C Chain C, Crystal Structure Of Pala-Bound Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7L|D Chain D, Crystal Structure Of Pala-Bound Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7L|E Chain E, Crystal Structure Of Pala-Bound Aspartate
Transcarbamoylase From Bacillus Subtilis
pdb|3R7L|F Chain F, Crystal Structure Of Pala-Bound Aspartate
Transcarbamoylase From Bacillus Subtilis
Length = 304
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 114/266 (42%), Gaps = 28/266 (10%)
Query: 4 IFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYN-DIIMARVF 62
+F +PS RTR SFE LG + + L + K E D R L D+ + R
Sbjct: 42 LFFEPSTRTRFSFEVAEKKLGMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHS 101
Query: 63 GHQDILDLAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVH 121
+ +L +P++N G HP Q + D +TI E +G V GD I H
Sbjct: 102 EDEYYEELVSQVNIPILNAGDGCGQHPTQSLLDLMTIYEEFNTFKGLTVSIHGD---IKH 158
Query: 122 SWLLMASV-----IPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVV 176
S + ++ + + + P ++ ++ T ++ D E V+ +DVV
Sbjct: 159 SRVARSNAEVLTRLGARVLFSGPSEWQDEENTF---------GTYVSMD--EAVESSDVV 207
Query: 177 YSDVWASMGQKEEAAYRKQAF---QGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVI 233
+ ++ ++A ++ + G V+ + A MH P RGVE+ + ++
Sbjct: 208 M--LLRIQNERHQSAVSQEGYLNKYGLTVER--AERMKRHAIIMHPAPVNRGVEIDDSLV 263
Query: 234 EAPYSIVFPQAENRMHAQNAIMLHAL 259
E+ S +F Q +N + + A++ AL
Sbjct: 264 ESEKSRIFKQMKNGVFIRMAVIQRAL 289
>pdb|2BE9|A Chain A, Crystal Structure Of The Ctp-Liganded (T-State) Aspartate
Transcarbamoylase From The Extremely Thermophilic
Archaeon Sulfolobus Acidocaldarius
Length = 300
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 17/186 (9%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREETRDAARVLCRYNDIIMA 59
+S+ F +PS RT +SF+ LGG I + G + + K E D R+L Y+D I+
Sbjct: 42 ISIAFFEPSTRTYLSFQKAIINLGGDVIGFSGEESTSVAKGENLADTIRMLNNYSDGIVM 101
Query: 60 RVFGHQDILDLAKFAT----VPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVG 114
R ++FA+ +PVIN G + HP Q + D TI +H ++G +G
Sbjct: 102 R----HKYDGASRFASEISDIPVINAGDGKHEHPTQAVIDIYTINKHFNTIDGLVFALLG 157
Query: 115 DGN--NIVHSWL-LMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQ 171
D V+S L ++ P P+ KE +++ + ++E +P EV+
Sbjct: 158 DLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYP-VKEVE---NPFEVIN 213
Query: 172 GADVVY 177
DV+Y
Sbjct: 214 EVDVLY 219
>pdb|1PG5|A Chain A, Crystal Structure Of The Unligated (t-state) Aspartate
Transcarbamoylase From The Extremely Thermophilic
Archaeon Sulfolobus Acidocaldarius
Length = 299
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 17/186 (9%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREETRDAARVLCRYNDIIMA 59
+S+ F +PS RT +SF+ LGG I + G + + K E D R+L Y+D I+
Sbjct: 41 ISIAFFEPSTRTYLSFQKAIINLGGDVIGFSGEESTSVAKGENLADTIRMLNNYSDGIVM 100
Query: 60 RVFGHQDILDLAKFAT----VPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVG 114
R ++FA+ +PVIN G + HP Q + D TI +H ++G +G
Sbjct: 101 R----HKYDGASRFASEISDIPVINAGDGKHEHPTQAVIDIYTINKHFNTIDGLVFALLG 156
Query: 115 DGN--NIVHSWL-LMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQ 171
D V+S L ++ P P+ KE +++ + ++E +P EV+
Sbjct: 157 DLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYP-VKEVE---NPFEVIN 212
Query: 172 GADVVY 177
DV+Y
Sbjct: 213 EVDVLY 218
>pdb|2AT2|A Chain A, Molecular Structure Of Bacillus Subtilis Aspartate
Transcarbamoylase At 3.0 Angstroms Resolution
pdb|2AT2|B Chain B, Molecular Structure Of Bacillus Subtilis Aspartate
Transcarbamoylase At 3.0 Angstroms Resolution
pdb|2AT2|C Chain C, Molecular Structure Of Bacillus Subtilis Aspartate
Transcarbamoylase At 3.0 Angstroms Resolution
Length = 300
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 114/266 (42%), Gaps = 28/266 (10%)
Query: 4 IFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYN-DIIMARVF 62
+F +PS RTR SFE LG + + L + K E D R L D+ + R
Sbjct: 42 LFFEPSTRTRFSFEVAEKKLGMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHS 101
Query: 63 GHQDILDLAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVH 121
+ +L +P++N G HP Q + D +TI E +G V GD I H
Sbjct: 102 EDEYYEELVSQVNIPILNAGDGCGQHPTQSLLDLMTIYEEFNTFKGLTVSIHGD---IKH 158
Query: 122 SWLLMASV-----IPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVV 176
S + ++ + + + P ++ ++ T ++ D E V+ +DVV
Sbjct: 159 SRVARSNAEVLTRLGARVLFSGPSEWQDEENTF---------GTYVSMD--EAVESSDVV 207
Query: 177 YSDVWASMGQKEEAAYRKQAF---QGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVI 233
+ ++ ++A ++ + G V+ + A MH P RGVE+ + ++
Sbjct: 208 M--LLRIQNERHQSAVSQEGYLNKYGLTVER--AERMKRHAIIMHPAPVNRGVEIDDSLV 263
Query: 234 EAPYSIVFPQAENRMHAQNAIMLHAL 259
E+ S +F Q +N + + A++ AL
Sbjct: 264 ESEKSRIFKQMKNGVFIRMAVIQCAL 289
>pdb|1ACM|A Chain A, Arginine 54 In The Active Site Of Escherichia Coli
Aspartate Transcarbamoylase Is Critical For Catalysis: A
Site-Specific Mutagenesis, Nmr And X-Ray Crystallography
Study
pdb|1ACM|C Chain C, Arginine 54 In The Active Site Of Escherichia Coli
Aspartate Transcarbamoylase Is Critical For Catalysis: A
Site-Specific Mutagenesis, Nmr And X-Ray Crystallography
Study
Length = 310
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 110/264 (41%), Gaps = 24/264 (9%)
Query: 5 FAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREET-RDAARVLCRYNDIIMARVF 62
F + S TR+SF+T LG + + + +GK+ ET D V+ Y D I+ R
Sbjct: 48 FFEASTATRLSFQTSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMR-- 105
Query: 63 GHQDILDLAKFAT-----VPVINGLTDYN-HPCQIMADALTIIEHVGRLEGTKVVYVGDG 116
A+ AT VPV+N N HP Q + D TI + GRL+ V VGD
Sbjct: 106 --HPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQQTEGRLDNLHVAMVGDL 163
Query: 117 N--NIVHSWLLMASVIPF---HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQ 171
VHS L ++ F F P + ++ + GI+ + + +EV+
Sbjct: 164 KYGRTVHS--LTQALAKFDGNRFYFIAPDALAMPEYILDMLDEKGIA-WSLHSSIEEVMA 220
Query: 172 GADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEG 231
D++Y + QKE + A Q L KA P R E+
Sbjct: 221 EVDILY----MTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATD 276
Query: 232 VIEAPYSIVFPQAENRMHAQNAIM 255
V + P++ F QA N + A+ A++
Sbjct: 277 VDKTPHAWYFQQAGNGIFARQALL 300
>pdb|3Q98|A Chain A, Structure Of Ygew Encoded Protein From E. Coli
Length = 399
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 112/293 (38%), Gaps = 69/293 (23%)
Query: 4 IFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR--- 60
+F S RTR S+ + +LLG L Q+ E R+ A + D I R
Sbjct: 69 VFRDNSTRTRFSYASALNLLGLAQQDLDEGKSQIAHGETVRETANXISFCADAIGIRDDX 128
Query: 61 VFGHQD---------ILDLAKFATVP----VINGLTDYNHPCQIMADALTIIEHVGRLEG 107
G + + D K +P ++N D +HP Q AD + EH G LE
Sbjct: 129 YLGAGNAYXREVGAALDDGYKQGVLPQRPALVNLQCDIDHPTQSXADLAWLREHFGSLEN 188
Query: 108 TKVVYVGDGNNIVHSWLLMASV-----IPFHFV-----------CACPKGFE--PDKETV 149
K G I +W S +P + A P+G++ PD V
Sbjct: 189 LK------GKKIAXTWAYSPSYGKPLSVPQGIIGLXTRFGXDVTLAHPEGYDLIPDVVEV 242
Query: 150 EK--ARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEE-------------AAYRK 194
K A+ +G S ++T+ +E + AD+VY WA EE A K
Sbjct: 243 AKNNAKASGGSFRQVTS-XEEAFKDADIVYPKSWAPYKVXEERTELLRANDHEGLKALEK 301
Query: 195 QAF-QGFQ------VDEFLMKLAGPKAYFMHCLPAE-RGV-----EVTEGVIE 234
Q Q Q +E +A + HCLPA+ GV EVTEGV E
Sbjct: 302 QCLAQNAQHKDWHCTEEXXELTRDGEALYXHCLPADISGVSCKEGEVTEGVFE 354
>pdb|2ATC|A Chain A, Crystal And Molecular Structures Of Native And
Ctp-Liganded Aspartate Carbamoyltransferase From
Escherichia Coli
Length = 305
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 112/271 (41%), Gaps = 43/271 (15%)
Query: 5 FAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREET-RDAARVLCRYNDIIMARVF 62
F + S RTR+SF+T LG + + + +GK+ +T + V+ Y D I+ R
Sbjct: 48 FFEASTRTRLSFQTSMHRLGASVVGFSDSANTSLGKKGQTLANTISVISTYVDAIVMR-- 105
Query: 63 GHQDILDLAKFAT-----VPVINGLTDYN-HPCQIMADALTIIEHVGRLEGTKVVYVGDG 116
A+ AT VPV+N N HP Q + D TI + GRL V VGD
Sbjct: 106 --HPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQQTEGRLNNLHVAMVGDL 163
Query: 117 N--NIVHSWLLMASVIPF---HFVCACPKGFEPDKETVEKARKAGI-----SKIE--ITN 164
VHS L ++ F F P + ++ + GI S IE +T
Sbjct: 164 KYGRTVHS--LTQALAKFDGNRFYFIAPDALAMPEYILDMLDEKGIAWSLHSSIEEVMTR 221
Query: 165 DPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAER 224
KE + ++ Y+ V K + R + G A A +H LP R
Sbjct: 222 VQKERLDPSE--YAXV------KAQFLVRANSLGGLHN-------AKMNAKVLHPLP--R 264
Query: 225 GVEVTEGVIEAPYSIVFPQAENRMHAQNAIM 255
E+ V + P++ F QA N + A+ A++
Sbjct: 265 VDEIATDVDKTPHAWYFQQAGNGIFARQALL 295
>pdb|1UT9|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 609
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 68 LDLAKFAT--------VPVINGLTDYNHPCQIMADALTIIEH 101
LD + FAT +P +N T+Y+HP I D T +++
Sbjct: 65 LDFSDFATEGIGYYFELPTVNSPTNYSHPFDIRKDIYTQMKY 106
>pdb|1RQ5|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 610
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 68 LDLAKFAT--------VPVINGLTDYNHPCQIMADALTIIEH 101
LD + FAT +P +N T+Y+HP I D T +++
Sbjct: 65 LDFSDFATEGIGYYFELPTVNSPTNYSHPFDIRKDIYTQMKY 106
>pdb|4H4F|A Chain A, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound To
Inhibitor Eglin C From Hirudo Medicinalis
Length = 249
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 27 AIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYN 86
++++G D I + KR L NDI + ++ H ++ D + A +P + L +
Sbjct: 70 SLFVGVDTIHVHKRWN------ALLLRNDIALIKLAEHVELSDTIQVACLPEKDSLLPKD 123
Query: 87 HPCQIMA 93
+PC +
Sbjct: 124 YPCYVTG 130
>pdb|3K4Z|A Chain A, Crystal Structure Of The Cellulosomal Cbm4 From
Clostridium Thermocellum Cellulase Cbha
Length = 289
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 8/37 (21%)
Query: 68 LDLAKFAT--------VPVINGLTDYNHPCQIMADAL 96
LD + FAT +P +N T+Y+HP I D L
Sbjct: 246 LDFSDFATEGIGYYFELPTVNSPTNYSHPFDIRKDIL 282
>pdb|3DAF|A Chain A, The Crystal Structure Of [fe]-Hydrogenase Holoenzyme (Hmd)
From Methanocaldococcus Jannaschii Cocrystallized With
Cyanide
pdb|3DAG|A Chain A, The Crystal Structure Of [fe]-Hydrogenase Holoenzyme (Hmd)
From Methanocaldococcus Jannaschii
Length = 358
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 160 IEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQA 196
+++T+D +E V+GAD+V + W G K+ +K A
Sbjct: 129 LKVTSDDREAVEGADIVIT--WLPKGNKQPDIIKKFA 163
>pdb|2B0J|A Chain A, The Crystal Structure Of The Apoenzyme Of The
Iron-Sulfur-Cluster-Free Hydrogenase (Hmd)
pdb|3F47|A Chain A, The Crystal Structure Of [fe]-Hydrogenase (Hmd) Holoenzyme
From Methanocaldococcus Jannaschii
Length = 358
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 160 IEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQA 196
+++T+D +E V+GAD+V + W G K+ +K A
Sbjct: 129 LKVTSDDREAVEGADIVIT--WLPKGNKQPDIIKKFA 163
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 76 VPVINGLTDYNHPCQIMAD 94
V V++G+ D NHPC I AD
Sbjct: 25 VAVLDGIVDQNHPCFIGAD 43
>pdb|3F46|A Chain A, The Crystal Structure Of C176a Mutated [fe]-Hydrogenase
(Hmd) Holoenzyme From Methanocaldococcus Jannaschii
pdb|3H65|A Chain A, The Crystal Structure Of C176a Mutated [fe]-Hydrogenase
(Hmd) Holoenzyme In Complex With
Methylenetetrahydromethanopterin
Length = 358
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 160 IEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQA 196
+++T+D +E V+GAD+V + W G K+ +K A
Sbjct: 129 LKVTSDDREAVEGADIVIT--WLPKGNKQPDIIKKFA 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,713,632
Number of Sequences: 62578
Number of extensions: 314665
Number of successful extensions: 1081
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 890
Number of HSP's gapped (non-prelim): 76
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)