Query 024871
Match_columns 261
No_of_seqs 115 out of 1072
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 08:03:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024871.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024871hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0078 ArgF Ornithine carbamo 100.0 3E-97 7E-102 664.2 27.4 259 1-260 47-310 (310)
2 PLN02342 ornithine carbamoyltr 100.0 1E-91 2.2E-96 649.6 30.2 261 1-261 88-348 (348)
3 PRK14805 ornithine carbamoyltr 100.0 7.7E-90 1.7E-94 628.3 29.0 257 1-260 41-301 (302)
4 PRK04284 ornithine carbamoyltr 100.0 9.8E-89 2.1E-93 627.9 30.1 260 1-261 48-332 (332)
5 TIGR00658 orni_carb_tr ornithi 100.0 9.5E-89 2.1E-93 622.2 29.5 259 1-260 42-304 (304)
6 PRK02255 putrescine carbamoylt 100.0 2.8E-88 6.1E-93 625.9 30.1 259 1-260 45-312 (338)
7 PRK03515 ornithine carbamoyltr 100.0 4.1E-88 9E-93 624.0 30.6 260 1-261 48-334 (336)
8 PRK12562 ornithine carbamoyltr 100.0 5E-88 1.1E-92 622.7 30.5 259 1-260 48-333 (334)
9 PRK02102 ornithine carbamoyltr 100.0 6.8E-88 1.5E-92 621.1 29.7 259 1-260 49-330 (331)
10 PRK00779 ornithine carbamoyltr 100.0 8.6E-88 1.9E-92 615.8 29.6 258 1-259 46-304 (304)
11 PRK01713 ornithine carbamoyltr 100.0 1.6E-87 3.6E-92 620.5 30.0 258 1-259 49-333 (334)
12 TIGR00670 asp_carb_tr aspartat 100.0 2.4E-87 5.2E-92 611.6 29.9 254 1-260 42-301 (301)
13 PRK00856 pyrB aspartate carbam 100.0 1.3E-85 2.7E-90 601.3 27.9 249 1-260 48-302 (305)
14 KOG1504 Ornithine carbamoyltra 100.0 1.5E-86 3.2E-91 579.3 18.3 259 1-260 83-345 (346)
15 PLN02527 aspartate carbamoyltr 100.0 5.9E-85 1.3E-89 597.3 29.8 253 1-260 42-304 (306)
16 PRK13814 pyrB aspartate carbam 100.0 3.3E-85 7.2E-90 599.2 26.9 248 1-260 48-304 (310)
17 PRK04523 N-acetylornithine car 100.0 2.8E-84 6.1E-89 598.9 28.9 257 1-260 41-334 (335)
18 PRK14804 ornithine carbamoyltr 100.0 3.7E-84 8E-89 593.3 29.3 255 1-260 46-310 (311)
19 PRK08192 aspartate carbamoyltr 100.0 4.6E-84 9.9E-89 597.9 28.7 255 1-260 47-317 (338)
20 TIGR03316 ygeW probable carbam 100.0 8.8E-84 1.9E-88 598.8 28.2 256 1-257 45-356 (357)
21 PRK07200 aspartate/ornithine c 100.0 1.7E-82 3.7E-87 596.1 29.3 255 2-257 63-373 (395)
22 PRK11891 aspartate carbamoyltr 100.0 2E-82 4.4E-87 599.5 29.5 255 1-260 129-398 (429)
23 COG0540 PyrB Aspartate carbamo 100.0 2.5E-79 5.5E-84 549.8 24.5 253 1-260 49-312 (316)
24 PRK13376 pyrB bifunctional asp 100.0 3.5E-78 7.5E-83 582.1 27.3 258 1-260 53-334 (525)
25 PF00185 OTCace: Aspartate/orn 100.0 4.4E-46 9.5E-51 311.3 15.7 151 106-258 1-158 (158)
26 PF02729 OTCace_N: Aspartate/o 100.0 1.6E-42 3.5E-47 284.9 10.2 101 1-101 42-142 (142)
27 COG0111 SerA Phosphoglycerate 97.5 0.0044 9.6E-08 57.7 14.6 129 70-220 84-233 (324)
28 PRK00257 erythronate-4-phospha 97.3 0.0037 7.9E-08 59.5 12.5 97 69-179 75-174 (381)
29 PLN03139 formate dehydrogenase 97.2 0.0062 1.3E-07 58.0 12.8 103 69-180 138-263 (386)
30 PRK08410 2-hydroxyacid dehydro 97.2 0.012 2.7E-07 54.2 14.3 97 69-179 80-203 (311)
31 PRK11790 D-3-phosphoglycerate 97.1 0.011 2.4E-07 56.7 13.2 98 69-179 92-210 (409)
32 PRK15438 erythronate-4-phospha 97.0 0.0095 2.1E-07 56.6 12.3 97 69-179 75-174 (378)
33 PRK07574 formate dehydrogenase 97.0 0.015 3.3E-07 55.4 13.1 103 69-180 131-256 (385)
34 PF02826 2-Hacid_dh_C: D-isome 96.9 0.011 2.4E-07 49.9 10.5 103 104-231 33-135 (178)
35 PRK15409 bifunctional glyoxyla 96.9 0.036 7.7E-07 51.6 14.3 128 69-219 83-235 (323)
36 PRK05476 S-adenosyl-L-homocyst 96.9 0.23 4.9E-06 48.0 20.1 95 74-180 172-275 (425)
37 PLN02928 oxidoreductase family 96.8 0.025 5.3E-07 53.1 13.1 101 104-219 156-261 (347)
38 PRK06487 glycerate dehydrogena 96.8 0.041 8.9E-07 50.9 13.8 60 104-179 145-204 (317)
39 PRK08306 dipicolinate synthase 96.7 0.071 1.5E-06 48.9 14.9 126 48-180 86-218 (296)
40 TIGR02853 spore_dpaA dipicolin 96.7 0.064 1.4E-06 49.0 14.2 125 48-180 85-217 (287)
41 PRK14179 bifunctional 5,10-met 96.6 0.047 1E-06 50.0 12.5 160 16-221 53-231 (284)
42 PTZ00075 Adenosylhomocysteinas 96.6 0.036 7.9E-07 54.1 12.4 125 67-220 205-341 (476)
43 PLN02516 methylenetetrahydrofo 96.6 0.029 6.2E-07 51.7 11.1 162 16-222 60-241 (299)
44 PLN02494 adenosylhomocysteinas 96.6 0.036 7.7E-07 54.1 12.3 131 74-234 214-353 (477)
45 PLN02306 hydroxypyruvate reduc 96.5 0.11 2.4E-06 49.5 15.0 136 69-220 103-272 (386)
46 PRK14171 bifunctional 5,10-met 96.5 0.041 8.8E-07 50.5 11.3 169 8-221 44-232 (288)
47 PRK13243 glyoxylate reductase; 96.4 0.1 2.2E-06 48.7 14.2 66 104-180 147-212 (333)
48 PRK06932 glycerate dehydrogena 96.4 0.085 1.8E-06 48.8 13.4 61 104-179 144-204 (314)
49 TIGR01327 PGDH D-3-phosphoglyc 96.4 0.092 2E-06 52.0 14.4 65 105-179 136-200 (525)
50 PRK12480 D-lactate dehydrogena 96.4 0.084 1.8E-06 49.2 13.2 90 105-219 144-233 (330)
51 COG1052 LdhA Lactate dehydroge 96.3 0.032 6.8E-07 52.0 10.1 93 104-219 143-235 (324)
52 PRK08605 D-lactate dehydrogena 96.2 0.16 3.6E-06 47.2 14.2 128 69-220 86-236 (332)
53 PRK15469 ghrA bifunctional gly 96.2 0.044 9.5E-07 50.7 10.1 66 104-180 133-198 (312)
54 cd00401 AdoHcyase S-adenosyl-L 96.2 1 2.3E-05 43.3 19.7 95 74-180 162-265 (413)
55 PRK13581 D-3-phosphoglycerate 96.2 0.14 3E-06 50.7 14.2 100 69-179 81-201 (526)
56 PF00670 AdoHcyase_NAD: S-aden 96.1 0.18 3.9E-06 42.4 12.6 116 90-235 7-123 (162)
57 PRK14187 bifunctional 5,10-met 96.1 0.12 2.7E-06 47.5 12.5 161 17-221 54-233 (294)
58 TIGR00936 ahcY adenosylhomocys 96.1 0.099 2.1E-06 50.2 12.4 118 74-219 155-281 (406)
59 PLN02616 tetrahydrofolate dehy 96.0 0.11 2.4E-06 49.1 12.1 161 16-221 124-304 (364)
60 PRK14188 bifunctional 5,10-met 96.0 0.15 3.2E-06 47.0 12.8 160 16-221 53-231 (296)
61 PRK14175 bifunctional 5,10-met 96.0 0.16 3.4E-06 46.6 12.6 161 16-221 53-231 (286)
62 PRK06436 glycerate dehydrogena 96.0 0.056 1.2E-06 49.8 9.8 63 104-180 119-181 (303)
63 PRK14174 bifunctional 5,10-met 96.0 0.16 3.4E-06 46.8 12.5 160 16-221 52-236 (295)
64 PRK14181 bifunctional 5,10-met 95.9 0.3 6.5E-06 44.8 14.2 161 16-221 47-230 (287)
65 cd05212 NAD_bind_m-THF_DH_Cycl 95.9 0.05 1.1E-06 44.6 8.1 86 95-221 15-101 (140)
66 PRK14192 bifunctional 5,10-met 95.9 0.22 4.8E-06 45.5 13.1 140 13-180 51-210 (283)
67 PRK14189 bifunctional 5,10-met 95.8 0.15 3.3E-06 46.7 11.6 161 16-221 53-231 (285)
68 TIGR01278 DPOR_BchB light-inde 95.8 0.12 2.5E-06 51.1 11.5 157 18-182 182-374 (511)
69 PF01210 NAD_Gly3P_dh_N: NAD-d 95.7 0.13 2.8E-06 42.5 10.0 67 109-181 1-78 (157)
70 cd01981 Pchlide_reductase_B Pc 95.7 0.42 9E-06 45.9 14.8 156 16-181 184-379 (430)
71 PRK14194 bifunctional 5,10-met 95.6 0.28 6.1E-06 45.3 12.9 159 17-221 55-232 (301)
72 PRK14178 bifunctional 5,10-met 95.6 0.28 6E-06 44.8 12.7 160 16-221 47-225 (279)
73 PRK05479 ketol-acid reductoiso 95.5 0.14 3E-06 47.9 10.6 69 103-180 13-81 (330)
74 PF02882 THF_DHG_CYH_C: Tetrah 95.4 0.13 2.8E-06 43.2 8.9 97 83-221 12-109 (160)
75 PRK14191 bifunctional 5,10-met 95.2 0.31 6.7E-06 44.7 11.5 161 15-221 51-230 (285)
76 PRK14167 bifunctional 5,10-met 95.2 0.44 9.5E-06 43.9 12.5 162 15-221 51-234 (297)
77 PRK02910 light-independent pro 95.2 0.18 4E-06 49.8 10.7 156 18-181 182-371 (519)
78 PRK14166 bifunctional 5,10-met 95.1 0.31 6.6E-06 44.6 11.2 163 15-221 50-230 (282)
79 PRK14169 bifunctional 5,10-met 95.1 0.51 1.1E-05 43.2 12.7 161 15-221 50-229 (282)
80 PRK14170 bifunctional 5,10-met 95.1 0.48 1E-05 43.4 12.4 160 16-221 52-230 (284)
81 PRK14184 bifunctional 5,10-met 94.9 1.1 2.3E-05 41.2 14.1 161 16-221 52-234 (286)
82 PRK14173 bifunctional 5,10-met 94.8 0.62 1.3E-05 42.8 12.4 160 16-221 50-228 (287)
83 PRK14182 bifunctional 5,10-met 94.7 0.71 1.5E-05 42.2 12.5 161 16-221 51-230 (282)
84 PRK07579 hypothetical protein; 94.7 0.12 2.5E-06 46.4 7.2 94 108-225 2-101 (245)
85 PRK14186 bifunctional 5,10-met 94.7 0.79 1.7E-05 42.3 12.7 161 15-221 52-231 (297)
86 PRK14172 bifunctional 5,10-met 94.7 0.85 1.8E-05 41.7 12.8 160 16-221 53-231 (278)
87 PRK00005 fmt methionyl-tRNA fo 94.7 0.31 6.7E-06 44.9 10.2 101 108-226 1-117 (309)
88 CHL00076 chlB photochlorophyll 94.6 0.8 1.7E-05 45.3 13.6 157 19-183 188-385 (513)
89 PRK14176 bifunctional 5,10-met 94.6 0.65 1.4E-05 42.6 11.8 161 15-221 58-237 (287)
90 cd01080 NAD_bind_m-THF_DH_Cycl 94.5 0.22 4.8E-06 42.0 8.2 75 84-180 21-95 (168)
91 PRK14183 bifunctional 5,10-met 94.5 0.72 1.6E-05 42.2 12.0 162 15-221 51-230 (281)
92 PRK10792 bifunctional 5,10-met 94.5 0.71 1.5E-05 42.3 12.0 159 16-220 54-231 (285)
93 PF07991 IlvN: Acetohydroxy ac 94.5 0.094 2E-06 44.2 5.7 67 105-180 2-68 (165)
94 PRK14190 bifunctional 5,10-met 94.5 0.74 1.6E-05 42.2 11.9 161 16-221 53-231 (284)
95 PRK14180 bifunctional 5,10-met 94.4 0.66 1.4E-05 42.5 11.6 171 7-221 42-231 (282)
96 TIGR00460 fmt methionyl-tRNA f 94.4 0.38 8.3E-06 44.4 10.3 100 108-226 1-117 (313)
97 PRK14168 bifunctional 5,10-met 94.4 0.87 1.9E-05 42.0 12.4 161 16-221 54-238 (297)
98 cd01079 NAD_bind_m-THF_DH NAD 94.4 0.39 8.5E-06 41.6 9.4 116 85-221 31-157 (197)
99 COG0565 LasT rRNA methylase [T 94.3 0.26 5.6E-06 44.1 8.3 72 105-180 2-80 (242)
100 PF13241 NAD_binding_7: Putati 94.2 0.3 6.5E-06 37.5 7.7 65 104-180 4-68 (103)
101 PRK13403 ketol-acid reductoiso 94.2 0.24 5.3E-06 46.2 8.3 68 103-180 12-79 (335)
102 PRK06718 precorrin-2 dehydroge 94.1 0.28 6E-06 42.5 8.1 70 104-180 7-78 (202)
103 TIGR00465 ilvC ketol-acid redu 94.0 0.18 3.9E-06 46.7 7.2 67 105-180 1-67 (314)
104 cd01974 Nitrogenase_MoFe_beta 93.9 2.9 6.3E-05 40.3 15.5 168 13-181 176-386 (435)
105 PRK14177 bifunctional 5,10-met 93.8 1.5 3.2E-05 40.2 12.5 169 8-221 45-232 (284)
106 PLN02897 tetrahydrofolate dehy 93.6 1.2 2.6E-05 41.9 11.8 161 16-221 107-287 (345)
107 PRK14185 bifunctional 5,10-met 93.5 1.9 4.2E-05 39.7 12.8 159 17-221 53-234 (293)
108 PLN00106 malate dehydrogenase 93.3 0.33 7.2E-06 45.2 7.7 78 101-180 12-94 (323)
109 TIGR01470 cysG_Nterm siroheme 93.1 0.83 1.8E-05 39.7 9.4 70 104-180 6-77 (205)
110 PRK14193 bifunctional 5,10-met 93.1 2.3 4.9E-05 39.0 12.5 160 16-221 53-233 (284)
111 PRK14476 nitrogenase molybdenu 93.0 1.5 3.2E-05 42.7 11.8 155 19-182 190-381 (455)
112 PRK06988 putative formyltransf 93.0 1 2.2E-05 41.7 10.3 101 108-226 3-116 (312)
113 PF02056 Glyco_hydro_4: Family 92.8 1.4 3.1E-05 37.8 10.2 67 109-180 1-81 (183)
114 cd01968 Nitrogenase_NifE_I Nit 92.8 6.1 0.00013 37.7 15.7 119 16-141 176-320 (410)
115 TIGR00518 alaDH alanine dehydr 92.7 1.4 3E-05 41.7 11.0 94 105-217 165-264 (370)
116 PLN00112 malate dehydrogenase 92.6 1.4 3E-05 42.9 11.0 75 106-180 99-184 (444)
117 cd01977 Nitrogenase_VFe_alpha 92.5 1.5 3.2E-05 42.1 11.0 154 20-182 184-368 (415)
118 TIGR01283 nifE nitrogenase mol 92.4 5.2 0.00011 38.8 14.9 117 15-138 214-356 (456)
119 TIGR01284 alt_nitrog_alph nitr 92.3 1.3 2.8E-05 43.1 10.6 156 19-182 220-405 (457)
120 PRK05225 ketol-acid reductoiso 92.3 0.61 1.3E-05 45.5 8.0 72 104-180 33-105 (487)
121 PRK00045 hemA glutamyl-tRNA re 92.1 1.2 2.6E-05 42.8 10.0 76 99-180 174-250 (423)
122 PRK05562 precorrin-2 dehydroge 92.0 0.94 2E-05 40.1 8.4 70 104-180 22-93 (223)
123 cd03466 Nitrogenase_NifN_2 Nit 91.8 7.9 0.00017 37.3 15.3 123 15-138 172-330 (429)
124 COG4087 Soluble P-type ATPase 91.8 1.1 2.3E-05 36.8 7.7 72 41-118 33-104 (152)
125 PLN02285 methionyl-tRNA formyl 91.8 1.3 2.9E-05 41.3 9.6 105 104-225 3-131 (334)
126 PF00056 Ldh_1_N: lactate/mala 91.8 0.62 1.4E-05 37.9 6.6 73 108-180 1-77 (141)
127 PRK06719 precorrin-2 dehydroge 91.7 0.75 1.6E-05 38.2 7.1 67 104-180 10-78 (157)
128 cd00650 LDH_MDH_like NAD-depen 91.7 1.7 3.7E-05 38.8 9.9 71 110-180 1-78 (263)
129 PF03446 NAD_binding_2: NAD bi 91.6 0.76 1.6E-05 38.0 7.0 64 108-180 2-65 (163)
130 PLN02256 arogenate dehydrogena 91.4 1.2 2.7E-05 41.0 8.8 73 98-180 27-100 (304)
131 cd00316 Oxidoreductase_nitroge 91.4 5.9 0.00013 37.1 13.7 156 17-180 172-356 (399)
132 PRK00066 ldh L-lactate dehydro 91.3 2.2 4.8E-05 39.4 10.5 74 106-180 5-81 (315)
133 PRK10637 cysG siroheme synthas 91.2 1.1 2.4E-05 43.6 8.6 70 104-180 9-80 (457)
134 COG0059 IlvC Ketol-acid reduct 91.2 1.2 2.5E-05 41.4 8.2 67 104-180 15-82 (338)
135 PF01488 Shikimate_DH: Shikima 91.1 0.32 7E-06 39.1 4.2 116 99-238 4-124 (135)
136 TIGR01035 hemA glutamyl-tRNA r 91.1 1.7 3.8E-05 41.7 9.8 76 99-180 172-248 (417)
137 PRK07232 bifunctional malic en 91.0 4.9 0.00011 41.7 13.4 177 42-247 113-318 (752)
138 PRK12862 malic enzyme; Reviewe 90.6 6.8 0.00015 40.8 14.1 152 42-219 121-291 (763)
139 TIGR00050 rRNA_methyl_1 RNA me 90.6 1.4 3E-05 39.1 8.0 72 105-180 1-79 (233)
140 COG0190 FolD 5,10-methylene-te 90.5 1.1 2.5E-05 40.9 7.5 141 15-180 50-207 (283)
141 TIGR00639 PurN phosphoribosylg 90.3 4.3 9.4E-05 34.8 10.7 38 172-226 79-118 (190)
142 PRK07066 3-hydroxybutyryl-CoA 90.2 1.8 3.8E-05 40.3 8.8 72 108-180 8-91 (321)
143 PF03807 F420_oxidored: NADP o 90.2 1.4 3E-05 32.6 6.7 65 109-181 1-70 (96)
144 PF10727 Rossmann-like: Rossma 90.1 0.96 2.1E-05 36.4 6.1 98 106-223 9-107 (127)
145 PF01861 DUF43: Protein of unk 89.9 2.9 6.2E-05 37.5 9.3 86 86-180 25-120 (243)
146 PRK12549 shikimate 5-dehydroge 89.8 14 0.00031 33.5 14.2 170 9-180 17-200 (284)
147 KOG0068 D-3-phosphoglycerate d 89.7 2.2 4.8E-05 40.2 8.7 156 40-219 35-235 (406)
148 COG1648 CysG Siroheme synthase 89.6 2.7 6E-05 36.7 8.9 72 104-180 9-80 (210)
149 PTZ00082 L-lactate dehydrogena 89.5 2.1 4.5E-05 39.7 8.7 74 105-180 4-82 (321)
150 TIGR02931 anfK_nitrog Fe-only 89.5 14 0.0003 36.1 14.7 163 18-181 189-397 (461)
151 cd01965 Nitrogenase_MoFe_beta_ 89.4 9.2 0.0002 36.7 13.3 167 14-181 172-380 (428)
152 COG1004 Ugd Predicted UDP-gluc 89.3 1.7 3.7E-05 41.7 7.9 76 98-182 302-387 (414)
153 PRK13940 glutamyl-tRNA reducta 89.3 3.8 8.2E-05 39.5 10.4 104 99-223 173-277 (414)
154 PRK04148 hypothetical protein; 89.2 3.5 7.6E-05 33.6 8.7 78 92-180 4-85 (134)
155 PRK06141 ornithine cyclodeamin 89.2 1.8 3.9E-05 39.9 8.0 78 100-180 118-197 (314)
156 cd01337 MDH_glyoxysomal_mitoch 89.2 3.3 7.2E-05 38.3 9.7 71 108-180 1-76 (310)
157 TIGR01862 N2-ase-Ialpha nitrog 89.2 12 0.00026 36.3 13.9 153 20-181 213-396 (443)
158 TIGR02371 ala_DH_arch alanine 89.1 1.9 4.1E-05 40.0 8.0 77 101-180 122-200 (325)
159 PRK08125 bifunctional UDP-gluc 89.0 3.7 8E-05 41.7 10.7 100 108-226 1-114 (660)
160 PRK08291 ectoine utilization p 88.6 2.8 6E-05 38.9 8.8 76 102-180 127-205 (330)
161 TIGR01757 Malate-DH_plant mala 88.6 6.1 0.00013 37.8 11.2 112 105-218 42-168 (387)
162 PRK14478 nitrogenase molybdenu 88.4 11 0.00024 36.9 13.2 155 18-182 211-403 (475)
163 cd05293 LDH_1 A subgroup of L- 88.3 5.4 0.00012 36.9 10.4 70 108-179 4-78 (312)
164 PRK07502 cyclohexadienyl dehyd 88.2 2.4 5.2E-05 38.6 8.0 67 107-180 6-74 (307)
165 cd01078 NAD_bind_H4MPT_DH NADP 88.2 3.9 8.5E-05 34.5 8.8 75 104-180 25-105 (194)
166 cd05197 GH4_glycoside_hydrolas 88.1 1.4 3E-05 42.6 6.6 73 108-180 1-82 (425)
167 PRK12861 malic enzyme; Reviewe 88.1 11 0.00023 39.3 13.3 147 45-219 123-287 (764)
168 PRK07679 pyrroline-5-carboxyla 88.1 10 0.00022 34.0 12.0 67 106-180 2-73 (279)
169 PF06506 PrpR_N: Propionate ca 88.0 1.3 2.8E-05 37.3 5.6 75 51-137 32-106 (176)
170 PF03721 UDPG_MGDP_dh_N: UDP-g 87.9 1.9 4.2E-05 36.7 6.8 69 108-179 1-83 (185)
171 TIGR01759 MalateDH-SF1 malate 87.9 6.4 0.00014 36.6 10.7 74 107-180 3-87 (323)
172 TIGR01860 VNFD nitrogenase van 87.8 7 0.00015 38.1 11.4 140 39-181 236-406 (461)
173 cd01971 Nitrogenase_VnfN_like 87.7 24 0.00052 33.9 14.9 157 16-181 178-380 (427)
174 TIGR00561 pntA NAD(P) transhyd 87.7 6 0.00013 39.3 10.8 95 105-216 162-280 (511)
175 PRK08618 ornithine cyclodeamin 87.5 2.7 5.9E-05 38.9 8.0 78 100-180 120-200 (325)
176 cd05213 NAD_bind_Glutamyl_tRNA 87.3 2.8 6E-05 38.6 7.9 76 99-180 170-246 (311)
177 TIGR01772 MDH_euk_gproteo mala 87.1 3.1 6.8E-05 38.5 8.1 70 109-180 1-75 (312)
178 cd05291 HicDH_like L-2-hydroxy 86.8 6.3 0.00014 36.0 9.9 71 108-180 1-76 (306)
179 cd01065 NAD_bind_Shikimate_DH 86.8 5.7 0.00012 31.8 8.7 72 104-180 16-89 (155)
180 cd00704 MDH Malate dehydrogena 86.7 4 8.8E-05 37.9 8.6 73 108-180 1-84 (323)
181 PLN00203 glutamyl-tRNA reducta 86.6 2.7 5.9E-05 41.7 7.8 105 99-223 256-373 (519)
182 cd01338 MDH_choloroplast_like 86.4 5.5 0.00012 37.0 9.4 74 107-180 2-86 (322)
183 PLN02688 pyrroline-5-carboxyla 86.4 3.9 8.5E-05 36.2 8.1 64 108-180 1-69 (266)
184 PRK08293 3-hydroxybutyryl-CoA 86.4 4.2 9E-05 36.7 8.4 67 108-180 4-92 (287)
185 PRK11559 garR tartronate semia 86.3 3.1 6.7E-05 37.5 7.5 64 108-180 3-66 (296)
186 cd05298 GH4_GlvA_pagL_like Gly 86.2 1.9 4.2E-05 41.8 6.4 73 108-180 1-82 (437)
187 PRK08655 prephenate dehydrogen 86.2 3.2 6.9E-05 40.2 8.0 66 108-180 1-66 (437)
188 PLN02712 arogenate dehydrogena 86.0 2.8 6.1E-05 42.8 7.8 67 104-180 366-433 (667)
189 PRK07531 bifunctional 3-hydrox 86.0 3.6 7.9E-05 40.4 8.3 72 108-180 5-88 (495)
190 PRK06130 3-hydroxybutyryl-CoA 85.7 2.1 4.5E-05 39.0 6.2 67 108-180 5-87 (311)
191 PRK06129 3-hydroxyacyl-CoA deh 85.7 2.7 5.9E-05 38.4 6.9 72 108-180 3-90 (308)
192 COG0373 HemA Glutamyl-tRNA red 85.7 4.4 9.5E-05 39.1 8.5 92 99-210 170-261 (414)
193 TIGR01861 ANFD nitrogenase iro 85.6 20 0.00044 35.5 13.3 153 20-180 224-406 (513)
194 KOG0069 Glyoxylate/hydroxypyru 85.5 4.9 0.00011 37.7 8.5 102 69-180 101-225 (336)
195 PLN02477 glutamate dehydrogena 85.4 24 0.00051 34.1 13.3 105 74-180 169-289 (410)
196 PF02737 3HCDH_N: 3-hydroxyacy 85.2 1.4 3.1E-05 37.3 4.5 70 109-180 1-86 (180)
197 cd02812 PcrB_like PcrB_like pr 85.2 18 0.00039 31.9 11.5 164 14-180 15-205 (219)
198 PRK14106 murD UDP-N-acetylmura 85.1 3.5 7.5E-05 39.5 7.7 74 104-179 2-75 (450)
199 PF02423 OCD_Mu_crystall: Orni 85.1 1.8 3.8E-05 40.0 5.4 117 101-236 122-241 (313)
200 PRK10433 putative RNA methyltr 85.1 4.7 0.0001 35.7 7.9 72 107-180 2-78 (228)
201 TIGR01505 tartro_sem_red 2-hyd 85.1 2.7 5.8E-05 38.0 6.5 63 109-180 1-63 (291)
202 PRK09260 3-hydroxybutyryl-CoA 85.0 4.5 9.7E-05 36.5 7.9 67 108-180 2-89 (288)
203 PRK05647 purN phosphoribosylgl 85.0 5.3 0.00012 34.5 8.0 39 171-226 79-119 (200)
204 PTZ00117 malate dehydrogenase; 84.9 5.5 0.00012 36.8 8.6 74 105-180 3-81 (319)
205 cd05311 NAD_bind_2_malic_enz N 84.9 17 0.00037 31.9 11.4 86 92-180 9-105 (226)
206 PRK07340 ornithine cyclodeamin 84.8 3.6 7.8E-05 37.8 7.3 114 100-236 118-234 (304)
207 PRK07417 arogenate dehydrogena 84.8 3.4 7.4E-05 37.2 7.0 64 109-180 2-65 (279)
208 PRK06823 ornithine cyclodeamin 84.4 5 0.00011 37.2 8.1 76 102-180 123-200 (315)
209 PRK06407 ornithine cyclodeamin 84.0 3.6 7.8E-05 37.8 6.9 72 106-180 116-190 (301)
210 PRK06545 prephenate dehydrogen 84.0 3.1 6.8E-05 39.0 6.7 68 108-180 1-68 (359)
211 PRK07589 ornithine cyclodeamin 84.0 4.9 0.00011 37.8 7.9 76 102-180 124-201 (346)
212 COG0223 Fmt Methionyl-tRNA for 83.7 7.6 0.00017 36.0 8.9 100 108-225 2-117 (307)
213 PRK05808 3-hydroxybutyryl-CoA 83.7 5.4 0.00012 35.8 7.9 74 108-183 4-93 (282)
214 KOG0409 Predicted dehydrogenas 83.7 3.3 7.2E-05 38.3 6.4 66 106-180 34-99 (327)
215 PRK05442 malate dehydrogenase; 83.4 9.4 0.0002 35.6 9.5 74 107-180 4-88 (326)
216 PLN02602 lactate dehydrogenase 83.3 14 0.0003 34.8 10.6 71 108-180 38-113 (350)
217 PLN02545 3-hydroxybutyryl-CoA 83.2 6.7 0.00015 35.4 8.3 71 108-180 5-91 (295)
218 cd01966 Nitrogenase_NifN_1 Nit 83.2 17 0.00037 34.9 11.4 153 19-181 179-369 (417)
219 PRK07634 pyrroline-5-carboxyla 83.2 7.4 0.00016 33.9 8.4 67 106-180 3-74 (245)
220 cd01075 NAD_bind_Leu_Phe_Val_D 83.2 27 0.00058 30.0 11.7 67 104-180 25-93 (200)
221 cd06388 PBP1_iGluR_AMPA_GluR4 83.1 41 0.00089 31.5 14.8 129 1-136 2-156 (371)
222 TIGR02992 ectoine_eutC ectoine 83.1 6.7 0.00014 36.3 8.4 75 103-180 125-202 (326)
223 PRK15461 NADH-dependent gamma- 83.0 4.8 0.0001 36.6 7.3 64 108-180 2-65 (296)
224 COG1486 CelF Alpha-galactosida 82.8 2.9 6.2E-05 40.6 5.9 70 106-180 2-85 (442)
225 COG1064 AdhP Zn-dependent alco 82.2 7.4 0.00016 36.6 8.2 115 50-180 119-237 (339)
226 cd06392 PBP1_iGluR_delta_1 N-t 82.1 17 0.00036 34.9 10.8 130 1-136 2-170 (400)
227 PRK12490 6-phosphogluconate de 82.0 17 0.00037 33.0 10.5 63 109-180 2-67 (299)
228 PRK15114 tRNA (cytidine/uridin 81.9 9.6 0.00021 34.1 8.6 71 106-180 3-80 (245)
229 COG2084 MmsB 3-hydroxyisobutyr 81.8 5.3 0.00012 36.7 7.0 65 108-180 1-65 (286)
230 PF01262 AlaDh_PNT_C: Alanine 81.6 3.3 7.2E-05 34.4 5.2 94 104-216 17-135 (168)
231 PRK00094 gpsA NAD(P)H-dependen 81.1 11 0.00023 34.2 8.9 67 108-180 2-79 (325)
232 TIGR02329 propionate_PrpR prop 81.0 10 0.00022 37.8 9.2 74 53-138 54-127 (526)
233 PRK12491 pyrroline-5-carboxyla 81.0 8.8 0.00019 34.6 8.2 64 108-180 3-71 (272)
234 cd01972 Nitrogenase_VnfE_like 80.9 18 0.0004 34.7 10.8 117 16-139 184-325 (426)
235 cd05312 NAD_bind_1_malic_enz N 80.8 40 0.00086 30.9 12.2 86 92-180 9-113 (279)
236 TIGR01282 nifD nitrogenase mol 80.7 50 0.0011 32.3 13.8 154 18-180 227-412 (466)
237 cd05297 GH4_alpha_glucosidase_ 80.5 11 0.00024 36.3 9.1 67 108-180 1-82 (423)
238 TIGR03026 NDP-sugDHase nucleot 80.1 5.7 0.00012 37.9 7.0 69 109-180 2-84 (411)
239 COG1004 Ugd Predicted UDP-gluc 80.1 6.3 0.00014 37.9 7.0 70 108-180 1-84 (414)
240 cd05290 LDH_3 A subgroup of L- 80.0 9 0.00019 35.4 8.0 71 109-180 1-76 (307)
241 PRK14618 NAD(P)H-dependent gly 79.9 25 0.00055 32.2 11.0 68 107-180 4-82 (328)
242 cd01976 Nitrogenase_MoFe_alpha 79.8 54 0.0012 31.5 13.6 113 19-138 193-330 (421)
243 TIGR01285 nifN nitrogenase mol 79.5 31 0.00067 33.3 11.8 159 14-181 184-382 (432)
244 cd01980 Chlide_reductase_Y Chl 79.3 60 0.0013 31.1 13.7 72 105-179 279-357 (416)
245 cd05296 GH4_P_beta_glucosidase 79.3 3.8 8.1E-05 39.6 5.4 73 108-180 1-83 (419)
246 PRK06199 ornithine cyclodeamin 79.1 9.4 0.0002 36.3 8.0 77 102-180 150-231 (379)
247 PRK13010 purU formyltetrahydro 79.1 24 0.00052 32.3 10.4 37 172-225 169-207 (289)
248 PLN02712 arogenate dehydrogena 79.0 6.1 0.00013 40.5 7.1 66 105-180 50-116 (667)
249 COG1879 RbsB ABC-type sugar tr 79.0 30 0.00065 31.2 11.1 73 12-86 51-127 (322)
250 TIGR01769 GGGP geranylgeranylg 79.0 43 0.00094 29.2 12.2 73 106-178 115-204 (205)
251 PF03698 UPF0180: Uncharacteri 78.9 1.4 3E-05 32.8 1.8 52 17-84 14-66 (80)
252 cd05294 LDH-like_MDH_nadp A la 78.8 17 0.00037 33.4 9.4 72 108-180 1-80 (309)
253 PRK15424 propionate catabolism 78.7 8.3 0.00018 38.5 7.8 103 42-156 48-155 (538)
254 PLN02828 formyltetrahydrofolat 78.4 53 0.0012 29.9 14.7 63 146-225 113-185 (268)
255 PRK07349 amidophosphoribosyltr 78.0 12 0.00025 37.2 8.5 122 12-144 273-420 (500)
256 TIGR02853 spore_dpaA dipicolin 77.9 7.1 0.00015 35.6 6.6 93 107-215 1-95 (287)
257 cd05211 NAD_bind_Glu_Leu_Phe_V 77.6 7.3 0.00016 34.1 6.3 35 103-138 19-53 (217)
258 PRK01710 murD UDP-N-acetylmura 77.6 16 0.00034 35.4 9.2 75 104-180 11-85 (458)
259 PRK07819 3-hydroxybutyryl-CoA 77.5 7 0.00015 35.5 6.4 71 108-180 6-92 (286)
260 PRK14477 bifunctional nitrogen 77.1 79 0.0017 33.7 14.9 114 20-140 206-352 (917)
261 cd06389 PBP1_iGluR_AMPA_GluR2 76.7 65 0.0014 30.0 14.4 130 1-137 2-151 (370)
262 PLN02331 phosphoribosylglycina 76.6 26 0.00056 30.5 9.4 37 172-225 78-116 (207)
263 PRK06476 pyrroline-5-carboxyla 76.6 8 0.00017 34.2 6.4 64 109-180 2-69 (258)
264 PRK14619 NAD(P)H-dependent gly 76.5 8.2 0.00018 35.2 6.6 53 106-180 3-55 (308)
265 TIGR00655 PurU formyltetrahydr 75.7 26 0.00056 32.0 9.6 103 83-225 92-198 (280)
266 COG0345 ProC Pyrroline-5-carbo 75.5 13 0.00028 33.8 7.4 101 108-222 2-118 (266)
267 PRK06027 purU formyltetrahydro 75.3 37 0.00079 31.0 10.5 97 106-225 88-203 (286)
268 PRK00258 aroE shikimate 5-dehy 75.0 20 0.00043 32.3 8.6 163 9-180 17-193 (278)
269 PRK05476 S-adenosyl-L-homocyst 75.0 17 0.00036 35.3 8.5 63 95-157 33-98 (425)
270 PRK08306 dipicolinate synthase 74.8 14 0.0003 33.9 7.6 102 106-221 1-103 (296)
271 cd01973 Nitrogenase_VFe_beta_l 74.6 88 0.0019 30.5 16.5 163 18-181 182-390 (454)
272 PTZ00325 malate dehydrogenase; 74.2 16 0.00035 34.0 8.0 74 105-180 6-84 (321)
273 PTZ00317 NADP-dependent malic 74.1 1E+02 0.0022 31.1 14.4 114 66-180 255-389 (559)
274 PRK06928 pyrroline-5-carboxyla 73.9 19 0.00042 32.3 8.3 67 108-180 2-72 (277)
275 PRK11199 tyrA bifunctional cho 73.8 9.1 0.0002 36.2 6.4 52 107-179 98-149 (374)
276 PRK14477 bifunctional nitrogen 73.5 57 0.0012 34.8 12.7 154 19-181 666-856 (917)
277 cd00640 Trp-synth-beta_II Tryp 73.5 24 0.00053 30.7 8.6 61 101-165 44-104 (244)
278 COG0287 TyrA Prephenate dehydr 73.4 14 0.00031 33.6 7.3 69 107-180 3-72 (279)
279 PF00551 Formyl_trans_N: Formy 73.2 12 0.00027 31.4 6.5 27 200-226 90-118 (181)
280 PRK08507 prephenate dehydrogen 73.2 10 0.00023 33.9 6.3 63 109-180 2-66 (275)
281 PRK06223 malate dehydrogenase; 73.1 19 0.00041 32.7 8.1 70 108-179 3-77 (307)
282 PRK05282 (alpha)-aspartyl dipe 73.0 39 0.00083 30.0 9.8 72 85-180 10-87 (233)
283 TIGR03376 glycerol3P_DH glycer 72.9 22 0.00048 33.4 8.6 70 109-179 1-89 (342)
284 COG2423 Predicted ornithine cy 72.7 16 0.00034 34.3 7.5 74 105-180 128-203 (330)
285 cd06283 PBP1_RegR_EndR_KdgR_li 72.7 17 0.00037 31.1 7.4 100 11-115 16-124 (267)
286 PLN02858 fructose-bisphosphate 72.7 24 0.00053 39.2 10.0 98 70-180 291-388 (1378)
287 PRK09424 pntA NAD(P) transhydr 72.7 35 0.00076 33.9 10.3 94 105-215 163-280 (509)
288 TIGR02689 ars_reduc_gluta arse 72.5 27 0.00057 27.5 7.9 71 108-180 1-79 (126)
289 TIGR01763 MalateDH_bact malate 72.4 34 0.00073 31.4 9.6 71 108-180 2-77 (305)
290 cd01336 MDH_cytoplasmic_cytoso 72.4 21 0.00046 33.1 8.3 73 107-180 2-86 (325)
291 PRK11070 ssDNA exonuclease Rec 72.2 12 0.00025 37.8 6.9 94 86-181 47-160 (575)
292 cd01575 PBP1_GntR Ligand-bindi 72.0 31 0.00068 29.4 8.9 102 12-117 17-126 (268)
293 PRK15057 UDP-glucose 6-dehydro 72.0 14 0.00031 35.2 7.2 64 109-180 2-81 (388)
294 cd05292 LDH_2 A subgroup of L- 72.0 31 0.00067 31.6 9.3 72 108-181 1-76 (308)
295 cd01967 Nitrogenase_MoFe_alpha 71.9 28 0.00061 32.8 9.3 116 16-138 178-316 (406)
296 PRK02705 murD UDP-N-acetylmura 71.9 26 0.00056 33.6 9.1 103 86-198 334-449 (459)
297 PRK13011 formyltetrahydrofolat 71.5 56 0.0012 29.8 10.8 37 172-225 165-203 (286)
298 PRK09414 glutamate dehydrogena 71.4 18 0.00039 35.3 7.8 68 77-145 198-277 (445)
299 PRK07680 late competence prote 71.3 27 0.00059 31.1 8.6 64 109-180 2-70 (273)
300 cd06390 PBP1_iGluR_AMPA_GluR1 71.2 91 0.002 29.2 13.3 127 1-135 2-148 (364)
301 cd01076 NAD_bind_1_Glu_DH NAD( 71.1 21 0.00044 31.5 7.5 35 103-138 27-61 (227)
302 COG0034 PurF Glutamine phospho 70.9 22 0.00047 34.8 8.1 126 7-143 239-390 (470)
303 PRK11064 wecC UDP-N-acetyl-D-m 70.8 20 0.00043 34.4 8.0 70 103-181 316-396 (415)
304 cd05313 NAD_bind_2_Glu_DH NAD( 70.8 19 0.00042 32.4 7.4 70 75-145 2-83 (254)
305 PRK06046 alanine dehydrogenase 70.8 24 0.00052 32.7 8.3 75 102-180 124-201 (326)
306 cd06277 PBP1_LacI_like_1 Ligan 70.8 44 0.00095 28.7 9.6 68 11-82 19-87 (268)
307 COG0039 Mdh Malate/lactate deh 70.7 33 0.00071 32.0 9.1 72 108-180 1-77 (313)
308 TIGR01915 npdG NADPH-dependent 70.1 18 0.00038 31.3 6.9 71 108-180 1-76 (219)
309 KOG1370 S-adenosylhomocysteine 70.1 33 0.00071 32.2 8.7 104 105-236 212-315 (434)
310 PRK06035 3-hydroxyacyl-CoA deh 69.8 27 0.00059 31.4 8.3 66 108-180 4-93 (291)
311 cd01537 PBP1_Repressors_Sugar_ 69.5 66 0.0014 26.9 10.9 67 12-82 17-86 (264)
312 PRK14030 glutamate dehydrogena 69.3 82 0.0018 30.8 11.8 55 91-146 208-274 (445)
313 PF10087 DUF2325: Uncharacteri 68.6 13 0.00029 27.9 5.1 61 109-185 1-62 (97)
314 COG1568 Predicted methyltransf 68.1 12 0.00025 34.7 5.3 72 102-180 148-229 (354)
315 PRK13529 malate dehydrogenase; 67.8 1.1E+02 0.0023 31.0 12.4 103 75-180 263-390 (563)
316 PRK02006 murD UDP-N-acetylmura 67.8 27 0.00058 34.1 8.3 74 103-180 3-77 (498)
317 PRK03094 hypothetical protein; 67.5 4 8.6E-05 30.4 1.9 32 53-84 35-66 (80)
318 cd01339 LDH-like_MDH L-lactate 67.5 46 0.001 30.2 9.4 68 110-179 1-73 (300)
319 cd05295 MDH_like Malate dehydr 67.4 49 0.0011 32.4 9.9 76 105-180 121-207 (452)
320 COG0394 Wzb Protein-tyrosine-p 67.3 19 0.00041 29.3 6.1 71 107-179 2-83 (139)
321 PF01113 DapB_N: Dihydrodipico 67.2 5.6 0.00012 31.4 2.9 72 108-180 1-75 (124)
322 COG0499 SAM1 S-adenosylhomocys 67.2 23 0.0005 33.8 7.3 138 67-234 160-308 (420)
323 PRK07530 3-hydroxybutyryl-CoA 67.0 37 0.00079 30.6 8.5 66 108-180 5-91 (292)
324 TIGR02932 vnfK_nitrog V-contai 66.9 1.3E+02 0.0028 29.3 15.8 165 16-181 184-393 (457)
325 PRK11880 pyrroline-5-carboxyla 66.8 27 0.00058 30.8 7.5 64 108-180 3-70 (267)
326 PRK15059 tartronate semialdehy 66.8 25 0.00055 31.9 7.5 62 109-180 2-63 (292)
327 cd08294 leukotriene_B4_DH_like 66.3 69 0.0015 28.5 10.2 88 87-179 124-218 (329)
328 COG0334 GdhA Glutamate dehydro 66.2 50 0.0011 31.9 9.5 63 75-138 171-237 (411)
329 PLN02353 probable UDP-glucose 66.1 35 0.00076 33.5 8.7 77 104-182 321-423 (473)
330 cd06394 PBP1_iGluR_Kainate_KA1 66.0 1.1E+02 0.0024 28.3 11.7 107 1-116 2-143 (333)
331 PRK14031 glutamate dehydrogena 66.0 38 0.00083 33.1 8.8 124 13-139 108-259 (444)
332 TIGR03026 NDP-sugDHase nucleot 65.9 22 0.00048 33.8 7.2 68 102-180 308-384 (411)
333 PRK15076 alpha-galactosidase; 65.5 18 0.00038 35.1 6.5 73 108-180 2-83 (431)
334 PRK11761 cysM cysteine synthas 65.5 40 0.00087 30.7 8.5 60 101-164 56-116 (296)
335 COG0219 CspR Predicted rRNA me 65.4 28 0.0006 29.1 6.7 121 108-232 3-138 (155)
336 COG2264 PrmA Ribosomal protein 65.4 48 0.001 30.7 8.9 87 83-179 142-236 (300)
337 cd00115 LMWPc Substituted upda 65.3 28 0.0006 27.8 6.7 71 108-180 1-84 (141)
338 PF00148 Oxidored_nitro: Nitro 65.0 23 0.00049 33.3 7.0 156 16-180 163-349 (398)
339 PRK01438 murD UDP-N-acetylmura 64.9 31 0.00067 33.4 8.1 74 104-180 13-86 (480)
340 PRK14806 bifunctional cyclohex 64.4 21 0.00046 36.6 7.1 66 108-180 4-71 (735)
341 cd06382 PBP1_iGluR_Kainate N-t 64.4 1.1E+02 0.0023 27.5 15.5 123 1-131 2-153 (327)
342 KOG3420 Predicted RNA methylas 63.4 17 0.00038 30.5 5.1 63 86-155 28-90 (185)
343 PRK15057 UDP-glucose 6-dehydro 63.4 27 0.00058 33.3 7.2 65 105-180 294-367 (388)
344 cd00762 NAD_bind_malic_enz NAD 63.0 1E+02 0.0023 27.8 10.4 88 91-180 8-114 (254)
345 PRK13982 bifunctional SbtC-lik 62.9 24 0.00051 34.8 6.8 62 84-145 231-311 (475)
346 TIGR02440 FadJ fatty oxidation 62.8 78 0.0017 32.6 10.9 71 108-180 305-392 (699)
347 cd01979 Pchlide_reductase_N Pc 62.7 52 0.0011 31.2 9.0 35 104-139 273-307 (396)
348 PRK13265 glycine/sarcosine/bet 62.2 22 0.00047 29.3 5.3 37 103-139 2-39 (154)
349 PRK14982 acyl-ACP reductase; P 62.0 98 0.0021 29.1 10.5 74 100-180 147-223 (340)
350 PRK09599 6-phosphogluconate de 62.0 36 0.00078 30.9 7.5 62 109-179 2-66 (301)
351 PRK13302 putative L-aspartate 61.9 34 0.00074 30.8 7.3 69 106-180 5-75 (271)
352 PF05368 NmrA: NmrA-like famil 61.8 18 0.00038 31.0 5.3 69 110-181 1-73 (233)
353 PTZ00345 glycerol-3-phosphate 61.8 58 0.0013 30.9 9.1 75 105-179 9-100 (365)
354 COG0608 RecJ Single-stranded D 61.4 40 0.00087 33.0 8.2 96 84-180 11-121 (491)
355 cd00401 AdoHcyase S-adenosyl-L 61.3 48 0.001 32.0 8.5 63 95-157 21-86 (413)
356 PRK10126 tyrosine phosphatase; 61.2 46 0.00099 27.0 7.3 70 108-179 3-82 (147)
357 PRK13530 arsenate reductase; P 61.0 50 0.0011 26.4 7.4 72 107-180 3-82 (133)
358 PRK08268 3-hydroxy-acyl-CoA de 60.8 45 0.00097 33.0 8.4 66 108-180 8-94 (507)
359 cd06391 PBP1_iGluR_delta_2 N-t 60.8 40 0.00086 32.1 7.9 130 1-136 2-170 (400)
360 TIGR01809 Shik-DH-AROM shikima 60.6 28 0.00061 31.5 6.5 164 9-180 17-198 (282)
361 cd06296 PBP1_CatR_like Ligand- 60.5 1.1E+02 0.0023 26.2 10.8 69 10-82 15-85 (270)
362 TIGR02437 FadB fatty oxidation 59.5 91 0.002 32.2 10.7 74 108-183 314-403 (714)
363 TIGR00936 ahcY adenosylhomocys 59.5 68 0.0015 30.9 9.2 63 95-157 17-82 (406)
364 PLN02565 cysteine synthase 59.4 51 0.0011 30.5 8.1 77 85-164 38-120 (322)
365 PRK11154 fadJ multifunctional 59.3 39 0.00085 34.8 8.0 71 108-180 310-397 (708)
366 PRK10717 cysteine synthase A; 59.3 59 0.0013 29.9 8.5 60 102-165 58-118 (330)
367 PRK12831 putative oxidoreducta 59.2 42 0.00091 32.6 7.9 52 105-157 279-333 (464)
368 cd01561 CBS_like CBS_like: Thi 59.2 67 0.0014 28.9 8.7 55 107-165 53-107 (291)
369 cd08295 double_bond_reductase_ 58.9 1.1E+02 0.0023 27.7 10.2 86 89-179 134-228 (338)
370 TIGR01286 nifK nitrogenase mol 58.8 1.1E+02 0.0025 30.3 10.9 164 17-181 240-446 (515)
371 PLN02858 fructose-bisphosphate 58.8 30 0.00066 38.5 7.4 65 107-180 4-68 (1378)
372 TIGR01139 cysK cysteine syntha 58.7 69 0.0015 28.9 8.8 61 101-165 50-111 (298)
373 PF01408 GFO_IDH_MocA: Oxidore 58.6 37 0.00079 25.7 6.0 65 108-180 1-70 (120)
374 PTZ00145 phosphoribosylpyropho 58.5 1.9E+02 0.0041 28.3 13.8 67 14-81 187-263 (439)
375 KOG2711 Glycerol-3-phosphate d 58.2 69 0.0015 30.4 8.6 22 158-179 91-112 (372)
376 PRK13304 L-aspartate dehydroge 58.0 52 0.0011 29.4 7.8 65 108-180 2-69 (265)
377 PTZ00075 Adenosylhomocysteinas 57.9 68 0.0015 31.6 9.0 84 95-180 30-132 (476)
378 COG0281 SfcA Malic enzyme [Ene 57.7 1.9E+02 0.0041 28.2 13.2 162 27-219 120-299 (432)
379 TIGR01138 cysM cysteine syntha 57.6 72 0.0016 28.9 8.7 76 85-164 31-112 (290)
380 cd06448 L-Ser-dehyd Serine deh 57.1 64 0.0014 29.7 8.4 54 107-164 51-104 (316)
381 TIGR02825 B4_12hDH leukotriene 56.8 1.4E+02 0.0031 26.7 10.6 48 105-157 137-184 (325)
382 PRK02472 murD UDP-N-acetylmura 56.7 63 0.0014 30.7 8.6 73 105-180 3-76 (447)
383 TIGR00872 gnd_rel 6-phosphoglu 56.1 24 0.00053 32.0 5.4 62 109-179 2-66 (298)
384 TIGR01137 cysta_beta cystathio 55.9 65 0.0014 30.9 8.5 60 101-164 55-115 (454)
385 TIGR01279 DPOR_bchN light-inde 55.7 79 0.0017 30.2 9.0 36 104-140 271-306 (407)
386 TIGR01758 MDH_euk_cyt malate d 55.7 48 0.001 30.8 7.3 72 109-180 1-83 (324)
387 TIGR01771 L-LDH-NAD L-lactate 55.7 87 0.0019 28.7 8.9 67 113-180 2-72 (299)
388 TIGR01380 glut_syn glutathione 55.6 13 0.00028 34.2 3.5 73 7-80 14-113 (312)
389 PRK15181 Vi polysaccharide bio 55.6 25 0.00055 32.3 5.4 35 104-138 12-46 (348)
390 PRK05793 amidophosphoribosyltr 55.3 43 0.00092 32.9 7.2 123 12-145 249-397 (469)
391 PRK06608 threonine dehydratase 55.2 40 0.00088 31.4 6.8 49 116-167 80-128 (338)
392 TIGR02279 PaaC-3OHAcCoADH 3-hy 55.2 34 0.00073 33.9 6.5 67 107-180 5-92 (503)
393 PRK11391 etp phosphotyrosine-p 55.1 61 0.0013 26.3 7.0 70 108-179 3-82 (144)
394 PRK08300 acetaldehyde dehydrog 54.8 64 0.0014 29.9 7.9 70 106-180 3-78 (302)
395 PRK00048 dihydrodipicolinate r 54.8 37 0.00079 30.3 6.2 64 108-178 2-66 (257)
396 PLN03129 NADP-dependent malic 54.6 1.8E+02 0.004 29.5 11.5 105 68-180 281-409 (581)
397 PTZ00142 6-phosphogluconate de 54.6 1.6E+02 0.0035 28.9 11.1 65 108-179 2-73 (470)
398 PRK06450 threonine synthase; V 54.5 1.1E+02 0.0025 28.4 9.7 89 84-179 72-169 (338)
399 COG0026 PurK Phosphoribosylami 54.5 57 0.0012 31.1 7.5 65 107-179 1-69 (375)
400 cd06267 PBP1_LacI_sugar_bindin 54.5 1.3E+02 0.0028 25.2 11.0 67 13-83 18-86 (264)
401 TIGR01692 HIBADH 3-hydroxyisob 54.4 37 0.00081 30.5 6.2 56 117-180 5-60 (288)
402 COG2263 Predicted RNA methylas 54.2 1.3E+02 0.0029 26.1 9.1 89 84-179 23-115 (198)
403 PRK15182 Vi polysaccharide bio 54.1 61 0.0013 31.3 8.0 66 105-180 4-84 (425)
404 COG1484 DnaC DNA replication p 53.8 56 0.0012 29.2 7.2 86 88-182 88-177 (254)
405 COG0014 ProA Gamma-glutamyl ph 53.7 9.3 0.0002 36.7 2.2 41 39-81 183-223 (417)
406 TIGR03366 HpnZ_proposed putati 53.3 1.1E+02 0.0024 27.0 9.1 75 100-180 114-195 (280)
407 TIGR02817 adh_fam_1 zinc-bindi 53.0 1.7E+02 0.0036 26.1 11.2 85 88-178 125-222 (336)
408 TIGR01723 hmd_TIGR 5,10-methen 53.0 18 0.00039 33.4 3.8 26 159-186 126-151 (340)
409 PRK06522 2-dehydropantoate 2-r 53.0 62 0.0013 28.8 7.5 66 108-180 1-74 (304)
410 COG0492 TrxB Thioredoxin reduc 52.9 34 0.00073 31.6 5.8 52 104-156 140-192 (305)
411 cd01391 Periplasmic_Binding_Pr 52.8 1.3E+02 0.0028 24.7 12.8 78 1-82 2-89 (269)
412 PRK00961 H(2)-dependent methyl 52.6 19 0.0004 33.3 3.8 24 160-185 129-152 (342)
413 PRK11730 fadB multifunctional 52.4 65 0.0014 33.3 8.3 71 108-180 314-400 (715)
414 cd06380 PBP1_iGluR_AMPA N-term 52.2 1.9E+02 0.0042 26.5 14.9 129 1-136 2-160 (382)
415 PLN03154 putative allyl alcoho 52.2 1.5E+02 0.0032 27.3 10.0 84 91-179 143-235 (348)
416 PLN02556 cysteine synthase/L-3 52.2 85 0.0018 29.7 8.5 78 84-164 81-164 (368)
417 cd01574 PBP1_LacI Ligand-bindi 52.1 58 0.0013 27.7 6.9 101 13-116 18-125 (264)
418 cd06284 PBP1_LacI_like_6 Ligan 52.0 84 0.0018 26.7 7.9 65 12-81 17-83 (267)
419 PF13380 CoA_binding_2: CoA bi 52.0 49 0.0011 25.8 5.8 60 108-180 1-63 (116)
420 PRK06019 phosphoribosylaminoim 51.8 71 0.0015 29.9 7.9 64 107-178 2-69 (372)
421 COG0299 PurN Folate-dependent 51.7 86 0.0019 27.3 7.6 38 171-225 78-117 (200)
422 PRK06381 threonine synthase; V 51.6 49 0.0011 30.2 6.6 51 111-164 66-116 (319)
423 PRK12937 short chain dehydroge 51.6 66 0.0014 27.2 7.1 35 104-138 2-36 (245)
424 PF05221 AdoHcyase: S-adenosyl 51.4 81 0.0018 28.7 7.8 63 95-157 28-93 (268)
425 cd00300 LDH_like L-lactate deh 51.3 1.2E+02 0.0026 27.6 9.2 69 110-180 1-74 (300)
426 PRK12439 NAD(P)H-dependent gly 51.2 78 0.0017 29.4 8.0 66 108-180 8-85 (341)
427 PLN00011 cysteine synthase 51.2 1E+02 0.0022 28.4 8.6 53 108-164 70-122 (323)
428 PLN02206 UDP-glucuronate decar 51.1 61 0.0013 31.3 7.5 75 105-182 117-193 (442)
429 PF03949 Malic_M: Malic enzyme 51.1 28 0.0006 31.5 4.7 88 91-180 8-114 (255)
430 KOG1496 Malate dehydrogenase [ 50.9 70 0.0015 29.1 7.1 148 107-254 4-169 (332)
431 PRK03369 murD UDP-N-acetylmura 50.8 81 0.0018 30.8 8.4 69 105-180 10-78 (488)
432 PRK08198 threonine dehydratase 50.6 50 0.0011 31.3 6.7 71 107-181 70-148 (404)
433 PRK12548 shikimate 5-dehydroge 50.5 87 0.0019 28.4 8.0 167 9-180 21-207 (289)
434 TIGR02035 D_Ser_am_lyase D-ser 50.0 35 0.00076 33.1 5.6 53 109-164 153-205 (431)
435 PTZ00431 pyrroline carboxylate 49.8 73 0.0016 28.2 7.3 59 107-180 3-65 (260)
436 PRK07272 amidophosphoribosyltr 49.7 1.3E+02 0.0028 29.8 9.5 120 13-144 247-393 (484)
437 PF03599 CdhD: CO dehydrogenas 49.7 50 0.0011 31.7 6.4 94 54-157 70-170 (386)
438 CHL00073 chlN photochlorophyll 49.4 23 0.00049 34.7 4.2 35 104-139 311-345 (457)
439 TIGR01316 gltA glutamate synth 48.9 45 0.00097 32.1 6.2 52 105-157 270-324 (449)
440 cd01562 Thr-dehyd Threonine de 48.9 62 0.0014 29.1 6.8 54 108-165 66-119 (304)
441 PRK04690 murD UDP-N-acetylmura 48.8 93 0.002 30.2 8.4 72 105-180 6-77 (468)
442 COG2085 Predicted dinucleotide 48.6 79 0.0017 27.8 7.0 68 109-182 3-71 (211)
443 PRK07847 amidophosphoribosyltr 48.6 87 0.0019 31.2 8.2 120 11-141 262-407 (510)
444 cd08230 glucose_DH Glucose deh 48.1 1.5E+02 0.0032 27.1 9.3 73 105-180 171-246 (355)
445 PF03059 NAS: Nicotianamine sy 48.1 70 0.0015 29.2 6.9 74 108-187 122-207 (276)
446 TIGR02356 adenyl_thiF thiazole 47.6 75 0.0016 27.2 6.8 38 103-141 17-55 (202)
447 PRK01372 ddl D-alanine--D-alan 47.5 52 0.0011 29.5 6.1 70 2-81 8-88 (304)
448 COG1646 Predicted phosphate-bi 47.3 34 0.00074 30.6 4.6 74 106-180 132-221 (240)
449 TIGR01161 purK phosphoribosyla 47.2 41 0.00089 31.1 5.4 63 109-178 1-66 (352)
450 KOG0572 Glutamine phosphoribos 47.2 95 0.0021 30.0 7.7 102 38-141 268-396 (474)
451 PRK08063 enoyl-(acyl carrier p 46.9 64 0.0014 27.4 6.3 33 105-137 2-34 (250)
452 cd06273 PBP1_GntR_like_1 This 46.8 1.8E+02 0.0039 24.7 10.6 65 14-82 19-85 (268)
453 PF00070 Pyr_redox: Pyridine n 46.8 28 0.00062 24.7 3.5 47 109-156 1-54 (80)
454 PRK12475 thiamine/molybdopteri 46.4 69 0.0015 29.9 6.8 37 104-141 21-58 (338)
455 cd08290 ETR 2-enoyl thioester 46.4 1.9E+02 0.004 25.9 9.6 52 105-157 145-196 (341)
456 smart00859 Semialdhyde_dh Semi 46.3 1.3E+02 0.0029 23.0 8.0 94 109-225 1-104 (122)
457 PF04723 GRDA: Glycine reducta 46.3 46 0.00099 27.4 4.8 35 104-138 2-37 (150)
458 cd00578 L-fuc_L-ara-isomerases 46.3 1.6E+02 0.0034 28.4 9.5 68 72-139 123-196 (452)
459 PLN03013 cysteine synthase 46.3 1.1E+02 0.0024 29.7 8.3 77 85-164 146-228 (429)
460 TIGR01136 cysKM cysteine synth 46.1 1.4E+02 0.003 27.0 8.7 55 107-165 58-112 (299)
461 PRK08229 2-dehydropantoate 2-r 46.0 1E+02 0.0022 28.2 7.8 65 108-180 3-81 (341)
462 PLN02948 phosphoribosylaminoim 45.8 47 0.001 33.5 5.9 40 104-144 19-58 (577)
463 KOG1198 Zinc-binding oxidoredu 45.5 1.8E+02 0.0039 27.3 9.4 87 86-178 131-231 (347)
464 cd06305 PBP1_methylthioribose_ 45.4 1.3E+02 0.0028 25.7 8.1 101 11-115 16-128 (273)
465 cd03146 GAT1_Peptidase_E Type 45.3 2E+02 0.0043 24.7 10.5 54 106-180 30-88 (212)
466 COG0673 MviM Predicted dehydro 45.2 87 0.0019 28.3 7.2 68 107-180 3-75 (342)
467 PF02601 Exonuc_VII_L: Exonucl 45.1 66 0.0014 29.4 6.4 49 36-84 50-116 (319)
468 cd06280 PBP1_LacI_like_4 Ligan 45.1 92 0.002 26.6 7.1 65 13-82 18-84 (263)
469 PRK12557 H(2)-dependent methyl 44.8 60 0.0013 30.4 6.2 57 120-179 32-88 (342)
470 PRK12829 short chain dehydroge 44.7 47 0.001 28.5 5.2 40 99-138 3-42 (264)
471 PLN02629 powdery mildew resist 44.7 17 0.00036 34.9 2.4 26 104-129 117-144 (387)
472 PRK09310 aroDE bifunctional 3- 44.7 99 0.0022 30.3 7.9 159 11-180 229-398 (477)
473 PRK07591 threonine synthase; V 44.5 63 0.0014 31.1 6.4 53 108-164 138-190 (421)
474 PRK05086 malate dehydrogenase; 44.4 1.7E+02 0.0037 26.9 9.1 71 108-180 1-77 (312)
475 PLN02353 probable UDP-glucose 44.3 76 0.0016 31.2 7.0 71 108-179 2-85 (473)
476 PF03720 UDPG_MGDP_dh_C: UDP-g 44.3 70 0.0015 24.3 5.5 55 120-180 19-74 (106)
477 PRK06935 2-deoxy-D-gluconate 3 44.2 87 0.0019 27.0 6.8 37 103-139 11-47 (258)
478 PRK08818 prephenate dehydrogen 44.0 82 0.0018 30.0 7.0 57 105-180 2-59 (370)
479 TIGR00507 aroE shikimate 5-deh 43.9 2.3E+02 0.005 25.1 12.8 164 9-180 12-186 (270)
480 cd01563 Thr-synth_1 Threonine 43.9 77 0.0017 28.9 6.7 46 116-164 78-123 (324)
481 TIGR02354 thiF_fam2 thiamine b 43.8 98 0.0021 26.5 6.9 37 103-140 17-54 (200)
482 PRK08936 glucose-1-dehydrogena 43.6 66 0.0014 27.8 5.9 38 103-140 3-40 (261)
483 PF13460 NAD_binding_10: NADH( 43.5 36 0.00077 27.7 4.0 61 110-180 1-68 (183)
484 PF00291 PALP: Pyridoxal-phosp 43.2 27 0.00059 31.2 3.5 53 107-163 56-108 (306)
485 PRK12749 quinate/shikimate deh 43.1 1.2E+02 0.0026 27.6 7.8 125 9-138 19-155 (288)
486 COG1250 FadB 3-hydroxyacyl-CoA 42.9 54 0.0012 30.4 5.4 73 107-181 3-91 (307)
487 cd08270 MDR4 Medium chain dehy 42.8 2.3E+02 0.0049 24.7 9.5 74 100-179 126-199 (305)
488 PLN02350 phosphogluconate dehy 42.4 64 0.0014 31.9 6.1 67 108-180 7-80 (493)
489 COG0135 TrpF Phosphoribosylant 42.4 59 0.0013 28.5 5.3 78 1-82 26-105 (208)
490 COG0604 Qor NADPH:quinone redu 42.3 2.5E+02 0.0054 25.9 9.8 88 87-180 123-219 (326)
491 PRK02842 light-independent pro 42.1 1.7E+02 0.0036 28.1 8.9 35 104-139 287-322 (427)
492 cd05282 ETR_like 2-enoyl thioe 42.1 2.4E+02 0.0052 24.7 9.7 48 105-157 137-184 (323)
493 smart00226 LMWPc Low molecular 42.0 1.1E+02 0.0025 24.0 6.6 69 110-179 1-78 (140)
494 cd05286 QOR2 Quinone oxidoredu 41.8 93 0.002 26.9 6.7 65 88-157 118-182 (320)
495 PRK00141 murD UDP-N-acetylmura 41.8 1.5E+02 0.0033 28.8 8.7 75 100-180 8-82 (473)
496 PRK05246 glutathione synthetas 41.5 28 0.00062 31.9 3.4 73 7-80 15-114 (316)
497 TIGR03693 ocin_ThiF_like putat 41.3 96 0.0021 31.7 7.2 75 104-180 126-212 (637)
498 COG1578 Uncharacterized conser 41.2 73 0.0016 29.1 5.8 78 103-180 147-243 (285)
499 COG1570 XseA Exonuclease VII, 41.0 52 0.0011 32.1 5.1 45 40-84 178-234 (440)
500 PRK05565 fabG 3-ketoacyl-(acyl 41.0 1.3E+02 0.0029 25.2 7.4 33 105-137 3-35 (247)
No 1
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-97 Score=664.22 Aligned_cols=259 Identities=57% Similarity=0.932 Sum_probs=248.5
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
+||+|++||||||+|||.||.+|||++++++++++|+++|||++||+||||+|+|+|++|++.|..++++|++++|||||
T Consensus 47 laliFeK~STRTR~SFeva~~qlGg~~~~l~~~~~Qlgr~Esi~DTArVLsr~~D~I~~R~~~~~~ve~lA~~s~VPViN 126 (310)
T COG0078 47 LALIFEKTSTRTRVSFEVAATQLGGHAIYLGPGDSQLGRGESIKDTARVLSRMVDAIMIRGFSHETLEELAKYSGVPVIN 126 (310)
T ss_pred EEEEecCCCchhhhhHHHHHHHcCCCeEEeCCCccccCCCCcHHHHHHHHHhhhheEEEecccHHHHHHHHHhCCCceEc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH----hC
Q 024871 81 GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK----AG 156 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~----~g 156 (261)
|++|.+||||+|+|++||+|++|.++|+|++||||+|||+|||+.+++++|+++.+++|++|+|+++++++|++ +|
T Consensus 127 gLtD~~HP~Q~LADl~Ti~E~~g~l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g 206 (310)
T COG0078 127 GLTDEFHPCQALADLMTIKEHFGSLKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESG 206 (310)
T ss_pred ccccccCcHHHHHHHHHHHHhcCcccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998875 34
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhh-cCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAF-QGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEA 235 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~-~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~ 235 (261)
+++++++|+++|+++|||||||+|.||||+.+..+++..+ .+||||+++|+.++++++||||||++||+||+++|+++
T Consensus 207 -~~i~~t~d~~eAv~gADvvyTDvWvSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHCLPA~rG~EVTdeV~dg 285 (310)
T COG0078 207 -GKITLTEDPEEAVKGADVVYTDVWVSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHCLPAHRGEEVTDEVFEG 285 (310)
T ss_pred -CeEEEecCHHHHhCCCCEEEecCcccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeCCCCCCCCccCHHHhCC
Confidence 6899999999999999999999999999988754444445 55999999999999999999999999999999999999
Q ss_pred CCcchHhHHhccHHHHHHHHHHHhc
Q 024871 236 PYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 236 ~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
|+|++|+|||||+|+|||+|+++||
T Consensus 286 ~~svvfdeAENRlH~qKAvl~~~l~ 310 (310)
T COG0078 286 PASVVFDEAENRLHTQKAVLAALLG 310 (310)
T ss_pred CceeeeehhhhhHHHHHHHHHHhhC
Confidence 9999999999999999999999986
No 2
>PLN02342 ornithine carbamoyltransferase
Probab=100.00 E-value=1e-91 Score=649.56 Aligned_cols=261 Identities=86% Similarity=1.371 Sum_probs=252.0
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||.|+++|||+++++++++||++||||++||+++||+|+|+||+||+.++.++++++++++||||
T Consensus 88 va~lF~epSTRTR~SFE~A~~~LGg~~i~l~~~~ss~~kGESl~DTarvLs~y~D~IviR~~~~~~~~~la~~~~vPVIN 167 (348)
T PLN02342 88 MAMIFTKPSMRTRVSFETGFFLLGGHALYLGPDDIQLGKREETRDIARVLSRYNDIIMARVFAHQDVLDLAEYSSVPVIN 167 (348)
T ss_pred EEEEecCCCcchHHHHHHHHHHcCCcEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEeCCChHHHHHHHHhCCCCEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeE
Q 024871 81 GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKI 160 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i 160 (261)
|+++.+||||+|+|+|||+|++|+++|+||+||||.+||+|||+.+++++|+++++++|++|+|++++++++++.|.+++
T Consensus 168 A~~~~~HPtQaLaDl~Ti~e~~G~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~ 247 (348)
T PLN02342 168 GLTDYNHPCQIMADALTIIEHIGRLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKI 247 (348)
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988887764478
Q ss_pred EEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccCCCcch
Q 024871 161 EITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240 (261)
Q Consensus 161 ~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~~s~~ 240 (261)
++++|+++++++|||||+|+|.+|+|+++.+++.+++.+||||+++|+.++++++||||||++||+||+++|+++|+|+|
T Consensus 248 ~~~~d~~eav~~aDVvy~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpLP~~rg~EIs~eV~d~p~s~i 327 (348)
T PLN02342 248 EITNDPAEAVKGADVVYTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCLPAERGVEVTDGVMEAPNSIV 327 (348)
T ss_pred EEEcCHHHHhCCCCEEEECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCCCcCCCceecHHHhCCcccHH
Confidence 99999999999999999999999999888777778999999999999999999999999999999999999999999999
Q ss_pred HhHHhccHHHHHHHHHHHhcC
Q 024871 241 FPQAENRMHAQNAIMLHALGL 261 (261)
Q Consensus 241 ~~Qa~N~l~~r~All~~~l~~ 261 (261)
|+||+||+|+|||||+++||.
T Consensus 328 f~QaeNrl~vrmAlL~~llg~ 348 (348)
T PLN02342 328 FPQAENRMHAQNAIMLHQLGK 348 (348)
T ss_pred HHHHhccHHHHHHHHHHHhcC
Confidence 999999999999999999984
No 3
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=100.00 E-value=7.7e-90 Score=628.29 Aligned_cols=257 Identities=46% Similarity=0.779 Sum_probs=243.8
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||.|+++|||+++++++++|+++||||++||+++||+|+|+||+||+.++.++++++++++||||
T Consensus 41 ~~~lF~epSTRTR~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~vls~y~D~iviR~~~~~~~~~~a~~~~vPVIN 120 (302)
T PRK14805 41 VVMLFEKPSLRTRVSFDIGINKLGGHCLYLDQQNGALGKRESVADFAANLSCWADAIVARVFSHSTIEQLAEHGSVPVIN 120 (302)
T ss_pred EEEEecCCCchHHHHHHHHHHHcCCcEEECCCCcCcCCCCcCHHHHHHHHHHhCCEEEEeCCChhHHHHHHHhCCCCEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH----HhC
Q 024871 81 GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR----KAG 156 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~----~~g 156 (261)
|+++.+||||+|+|+|||+|++|+++|+||+||||.+||+|||+.+++++|+++++++|++|+|++++++.++ +.|
T Consensus 121 a~~~~~HPtQaL~Dl~Ti~e~~g~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g 200 (302)
T PRK14805 121 ALCDLYHPCQALADFLTLAEQFGDVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSG 200 (302)
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC
Confidence 9988999999999999999999999999999999999999999999999999999999999999998887654 346
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAP 236 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~ 236 (261)
.++.+++|. +++++|||||||+|.+|++++..+++++++.+|+||+++|+.++++ +||||||+|||+||+++|+++|
T Consensus 201 -~~~~~~~d~-~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~vt~~~l~~a~~~-~vmH~lP~~Rg~Ei~~~V~d~p 277 (302)
T PRK14805 201 -GKLVLTSDI-EAIEGHDAIYTDTWISMGDDTPLAEIKAKFAPYQVNKALMEKAGAT-FVMHCQPAHRGVEITSEVMDGE 277 (302)
T ss_pred -CEEEEEcCH-HHHCCCCEEEeeceEeCCCccccHHHHHhccCCcCCHHHHhcCCCC-eEECCCCCCCCCeeCHHHhCCC
Confidence 678889995 6899999999999999987665566788999999999999999877 9999999999999999999999
Q ss_pred CcchHhHHhccHHHHHHHHHHHhc
Q 024871 237 YSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 237 ~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
+|+||+||+||+|+|||||+++||
T Consensus 278 ~s~i~~QaeN~l~vr~All~~~l~ 301 (302)
T PRK14805 278 GSLILQQAENRMHAQNAVLVTLLS 301 (302)
T ss_pred cChHHHHHhccHHHHHHHHHHHhc
Confidence 999999999999999999999987
No 4
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=100.00 E-value=9.8e-89 Score=627.94 Aligned_cols=260 Identities=45% Similarity=0.726 Sum_probs=245.5
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||.|+++|||+++++++++||++||||++||+++||+|+|+||+||+.++.++++|+++++||||
T Consensus 48 l~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~y~D~iviR~~~~~~~~~~a~~s~vPVIN 127 (332)
T PRK04284 48 IALIFEKDSTRTRCAFEVAAYDQGAHVTYLGPTGSQMGKKESTKDTARVLGGMYDGIEYRGFSQRTVETLAEYSGVPVWN 127 (332)
T ss_pred EEEEecCCChhHHHHHHHHHHHcCCeEEEcCCccccCCCCcCHHHHHHHHHHhCCEEEEecCchHHHHHHHHhCCCCEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHH-hCCCCCcEEEEEcCC-CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH----H
Q 024871 81 GLTDYNHPCQIMADALTIIEH-VGRLEGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR----K 154 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~-~g~l~~~~i~~vGd~-~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~----~ 154 (261)
|+++.+||||+|+|+|||+|+ +|+++|+||+||||+ +||+|||+.+++++|+++++++|++|.|++++++.++ +
T Consensus 128 a~~~~~HPtQaL~Dl~Ti~e~~~g~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~ 207 (332)
T PRK04284 128 GLTDEDHPTQVLADFLTAKEHLKKPYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAE 207 (332)
T ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999 799999999999997 7899999999999999999999999999998887665 3
Q ss_pred hCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHH-HHHHHhhhcCCcccHHHHHhcC-CCcEEeeCCCCC---------
Q 024871 155 AGISKIEITNDPKEVVQGADVVYSDVWASMGQKEE-AAYRKQAFQGFQVDEFLMKLAG-PKAYFMHCLPAE--------- 223 (261)
Q Consensus 155 ~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~-~~~~~~~~~~y~v~~~~~~~a~-~~~~~mH~lP~~--------- 223 (261)
.| ..+.+++|+++|+++|||||+++|.+|+++++ .+++.+++.+||||+++|+.++ ++++||||||++
T Consensus 208 ~g-~~~~~~~d~~ea~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHplP~~r~~e~~~~~ 286 (332)
T PRK04284 208 TG-GKITITDDIDEGVKGSDVIYTDVWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCLPSFHDLDTKVGK 286 (332)
T ss_pred cC-CeEEEEcCHHHHhCCCCEEEECCcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCCCCCCCcccchhh
Confidence 55 57999999999999999999999999998665 4567788999999999999986 699999999998
Q ss_pred --------CCcccccccccCCCcchHhHHhccHHHHHHHHHHHhcC
Q 024871 224 --------RGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALGL 261 (261)
Q Consensus 224 --------rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~~ 261 (261)
||+||+++|+++|+|++|+||+||+|+|||||+++||.
T Consensus 287 ~~~~~~~~rg~Ei~~~V~d~~~S~i~~QaeNrl~~~kAvl~~~~~~ 332 (332)
T PRK04284 287 EIFEKYGLKEMEVTDEVFESKASVVFDEAENRMHTIKAVMVATLGE 332 (332)
T ss_pred hhhhhcCCCCcEEcHHHhCCccchHHHHHhhhHHHHHHHHHHHhcC
Confidence 68889999999999999999999999999999999873
No 5
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=100.00 E-value=9.5e-89 Score=622.24 Aligned_cols=259 Identities=57% Similarity=0.970 Sum_probs=246.3
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||+|+++|||+++++++++|+++||||++||+++||+|+|+||+||+.++.++++++++++||||
T Consensus 42 v~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~vls~y~D~iv~R~~~~~~~~~~a~~~~vPVIN 121 (304)
T TIGR00658 42 LALIFEKPSTRTRVSFEVAAYQLGGHPLYLNPNDLQLGRGESIKDTARVLSRYVDGIMARVYKHEDVEELAKYASVPVIN 121 (304)
T ss_pred EEEEecCCCcchHHHHHHHHHHcCCCEEEeCCccccCCCCCCHHHHHHHHHHhCCEEEEECCChHHHHHHHHhCCCCEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH----HhC
Q 024871 81 GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR----KAG 156 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~----~~g 156 (261)
|+++++||||+|+|+|||+|++|+++|+||+||||.+||+||++.++++||+++++++|++|.|+++++++++ +.|
T Consensus 122 a~~~~~HPtQaL~Dl~Ti~e~~g~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g 201 (304)
T TIGR00658 122 GLTDLFHPCQALADLLTIIEHFGKLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENG 201 (304)
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998887764 355
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAP 236 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~ 236 (261)
+++++++|+++++++|||||+++|.+|++++...+..+++.+|+||+++|+.+++|++||||||++||.||+++|+++|
T Consensus 202 -~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHplP~~rg~Ei~~~V~d~p 280 (304)
T TIGR00658 202 -GSVELTHDPVEAVKGADVIYTDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCLPAHRGEEVTDEVIEGP 280 (304)
T ss_pred -CeEEEEcCHHHHhCCCCEEEEcCcccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCCCCCCCceeCHHHhCCC
Confidence 5799999999999999999999999988655445567788999999999999999999999999999999999999999
Q ss_pred CcchHhHHhccHHHHHHHHHHHhc
Q 024871 237 YSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 237 ~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
+|+||+||+||+|+|||||++++|
T Consensus 281 ~s~~~~Qa~n~~~vr~AlL~~~l~ 304 (304)
T TIGR00658 281 HSIVFDQAENRLHAQKAVMVALLG 304 (304)
T ss_pred cchHHHHHhccHHHHHHHHHHHhC
Confidence 999999999999999999999986
No 6
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=100.00 E-value=2.8e-88 Score=625.91 Aligned_cols=259 Identities=47% Similarity=0.767 Sum_probs=243.0
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||.||++|||+++++++++|+++||||++||+++||+|+|+||+||+.++.++++++++++||||
T Consensus 45 v~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dtarvls~y~D~iviR~~~~~~~~~~a~~~~vPVIN 124 (338)
T PRK02255 45 LGMIFEQSSTRTRVSFETAMTQLGGHAQYLAPGQIQLGGHESLEDTARVLSRLVDIIMARVDRHQTVVELAKYATVPVIN 124 (338)
T ss_pred EEEEeCCCCcchHHHHHHHHHHcCCeEEEeCcccccCCCCcCHHHHHHHHHHhCcEEEEecCChHHHHHHHHhCCCCEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhC---CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH---
Q 024871 81 GLTDYNHPCQIMADALTIIEHVG---RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK--- 154 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g---~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~--- 154 (261)
|+++.+||||+|+|+|||+|++| +++|+||+||||.+||+|||+.+++++|++|++++|++|+|++++++++++
T Consensus 125 a~~~~~HPtQaLaDl~Ti~e~~g~g~~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~ 204 (338)
T PRK02255 125 GMSDYNHPTQELGDLFTMIEHLPEGKKLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCE 204 (338)
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCCCCCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHH
Confidence 99989999999999999999996 599999999999999999999999999999999999999999988877664
Q ss_pred -hCCCeEEEEcCHHHHhCCCCEEEEeccc-CcchhHHHHHHHhhhcC-CcccHHHHHhcCCCcEEeeCCCCCCCcccccc
Q 024871 155 -AGISKIEITNDPKEVVQGADVVYSDVWA-SMGQKEEAAYRKQAFQG-FQVDEFLMKLAGPKAYFMHCLPAERGVEVTEG 231 (261)
Q Consensus 155 -~g~~~i~~~~d~~~a~~~aDviy~~~w~-~~~~~~~~~~~~~~~~~-y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~ 231 (261)
.| .++++++|+++++++|||||+++|. +|+++...+++.+.+.+ ||||+++|+.++++++||||||++||.||+++
T Consensus 205 ~~g-~~~~~~~d~~eav~~aDvvy~~~w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpLP~~Rg~Eis~~ 283 (338)
T PRK02255 205 VSG-GSVLVTDDVDEAVKDADFVYTDVWYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCLPATRGEEVTDE 283 (338)
T ss_pred hcC-CeEEEEcCHHHHhCCCCEEEEcccHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCCCCcCCceecHH
Confidence 45 5789999999999999999999999 58875443445555555 99999999999999999999999999999999
Q ss_pred cccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 232 VIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 232 v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
|+++|+|+||+||+||+|+|||||+++||
T Consensus 284 V~d~p~s~if~Qa~Nrl~vrmAlL~~ll~ 312 (338)
T PRK02255 284 VMDSPRSICFDEAENRLTAIRALLVYFMN 312 (338)
T ss_pred HhCCccchHHHHHhccHHHHHHHHHHHhc
Confidence 99999999999999999999999999986
No 7
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=100.00 E-value=4.1e-88 Score=624.03 Aligned_cols=260 Identities=42% Similarity=0.659 Sum_probs=244.4
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
|+++|||||||||+|||+|+++|||+++++++++|+++||||++||+|+||+|+|+||+||+.++.++++++++++||||
T Consensus 48 l~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~s~~~kgEsl~Dtarvls~y~D~Iv~R~~~~~~~~~~a~~~~vPVIN 127 (336)
T PRK03515 48 IALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWN 127 (336)
T ss_pred EEEEecCCChhHHHHHHHHHHHcCCcEEEeCCccccCCCCCCHHHHHHHHHHhCcEEEEEeCChHHHHHHHHhCCCCEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhC--CCCCcEEEEEcCC-CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH----
Q 024871 81 GLTDYNHPCQIMADALTIIEHVG--RLEGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR---- 153 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g--~l~~~~i~~vGd~-~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~---- 153 (261)
|+++.+||||+|+|+|||+|+|| +++|+||+||||+ +||+|||+.+++++|+++++++|++|.|++++++.++
T Consensus 128 a~~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~ 207 (336)
T PRK03515 128 GLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQ 207 (336)
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHH
Confidence 99999999999999999999996 5999999999997 7899999999999999999999999999998886554
Q ss_pred HhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHH-HHHHHhhhcCCcccHHHHHhc-CCCcEEeeCCCCC--------
Q 024871 154 KAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEE-AAYRKQAFQGFQVDEFLMKLA-GPKAYFMHCLPAE-------- 223 (261)
Q Consensus 154 ~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~-~~~~~~~~~~y~v~~~~~~~a-~~~~~~mH~lP~~-------- 223 (261)
+.| .++++++|+++++++|||||||+|.+|+++++ .+++.+++.+||||+++|+.+ +++++||||||++
T Consensus 208 ~~g-~~i~~~~d~~ea~~~aDvvytd~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcLP~~~~~~~~~~ 286 (336)
T PRK03515 208 KNG-GNITLTEDIAEGVKGADFIYTDVWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCLPAFHDDQTTLG 286 (336)
T ss_pred HcC-CeEEEEcCHHHHhCCCCEEEecCcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECCCCCCCCcccccc
Confidence 356 57999999999999999999999999998655 345668899999999999995 8999999999994
Q ss_pred ----------CCcccccccccCCCcchHhHHhccHHHHHHHHHHHhcC
Q 024871 224 ----------RGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALGL 261 (261)
Q Consensus 224 ----------rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~~ 261 (261)
||+||+++|+++|+|+||+||+||+|+|||||+++||.
T Consensus 287 ~~~~~~~~~~rg~EIs~eV~~~p~s~if~QaeNrl~~~kAvl~~~l~~ 334 (336)
T PRK03515 287 KKMAEEYGLHGGMEVTDEVFESAHSIVFDQAENRLHTIKAVMVATLSK 334 (336)
T ss_pred cchhcccccCCCCEeCHHHhCCCcchHHHHHhhhHHHHHHHHHHHhCC
Confidence 88899999999999999999999999999999999874
No 8
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=100.00 E-value=5e-88 Score=622.71 Aligned_cols=259 Identities=44% Similarity=0.682 Sum_probs=243.5
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||+||++|||+++++++++|+++||||++||+||||+|+|+||+||+.++.++++|+++++||||
T Consensus 48 l~~lF~epSTRTR~SFE~A~~~LGg~~i~l~~~~s~~~kgEsl~Dtarvls~y~D~iviR~~~~~~~~~~a~~~~vPVIN 127 (334)
T PRK12562 48 IALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGHGQEVVETLAEYAGVPVWN 127 (334)
T ss_pred EEEEECCCCchhHHHHHHHHHHcCCeEEEeCCccccCCCCcCHHHHHHHHHHhCCEEEEECCchHHHHHHHHhCCCCEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhC--CCCCcEEEEEcCC-CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH----
Q 024871 81 GLTDYNHPCQIMADALTIIEHVG--RLEGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR---- 153 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g--~l~~~~i~~vGd~-~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~---- 153 (261)
|+++.+||||+|+|+|||+|++| .++|+||+||||. +||+|||+.+++++|+++++++|++|+|++++++.++
T Consensus 128 a~~~~~HPtQaLaDl~Ti~e~~g~~~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~ 207 (334)
T PRK12562 128 GLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQ 207 (334)
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCCCcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHH
Confidence 99999999999999999999996 4999999999997 7899999999999999999999999999998886654
Q ss_pred HhCCCeEEEEcCHHHHhCCCCEEEEecccCcch-hHHHHHHHhhhcCCcccHHHHHhc-CCCcEEeeCCCC---------
Q 024871 154 KAGISKIEITNDPKEVVQGADVVYSDVWASMGQ-KEEAAYRKQAFQGFQVDEFLMKLA-GPKAYFMHCLPA--------- 222 (261)
Q Consensus 154 ~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~-~~~~~~~~~~~~~y~v~~~~~~~a-~~~~~~mH~lP~--------- 222 (261)
+.| +.+++++|+++|+++|||||||+|.+|++ +++..++.+++.+||||+++|+.+ ++|++||||||+
T Consensus 208 ~~g-~~~~~~~d~~~a~~~aDvvyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcLP~~~~~~~~~~ 286 (334)
T PRK12562 208 KHG-GKITLTEDIAAGVKGADFIYTDVWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCLPAFHDDQTTLG 286 (334)
T ss_pred HcC-CeEEEEcCHHHHhCCCCEEEEcCccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCCCCCCcccccch
Confidence 345 57999999999999999999999999985 444456678899999999999996 799999999999
Q ss_pred ---------CCCcccccccccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 223 ---------ERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 223 ---------~rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
|||.||+++|+++|+|+||+||+||+|+|||||.++|.
T Consensus 287 ~~~~~~~~~~Rg~Eit~eV~d~p~S~if~QaeNrl~~~kAvl~~~~~ 333 (334)
T PRK12562 287 KKMAKEFGLHGGMEVTDEVFESPASIVFDQAENRMHTIKAVMVATLA 333 (334)
T ss_pred hhhhhhccCCCCcEeCHHHhCCCcchHHHHHhhhHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999874
No 9
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=100.00 E-value=6.8e-88 Score=621.13 Aligned_cols=259 Identities=48% Similarity=0.778 Sum_probs=246.2
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||.|+++|||+++++++++|+++||||++||++|||+|+|+||+||+.++.++++|+++++||||
T Consensus 49 v~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~rvls~y~D~iviR~~~~~~~~~~a~~~~vPVIN 128 (331)
T PRK02102 49 IALIFEKTSTRTRCAFEVAAIDLGAHVTYLGPNDSQLGKKESIEDTARVLGRMYDGIEYRGFKQEIVEELAKYSGVPVWN 128 (331)
T ss_pred EEEEeCCCChhHHHHHHHHHHHcCCCEEEcCcccccCCCCcCHHHHHHHHhhcCCEEEEECCchHHHHHHHHhCCCCEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCC-CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH----h
Q 024871 81 GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK----A 155 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~-~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~----~ 155 (261)
|+++.+||||+|+|+|||+|++|.++|+||+||||+ +||+|||+.+++++|+++++++|++|+|++++++++++ .
T Consensus 129 a~~~~~HPtQaLaDl~Ti~e~~g~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~ 208 (331)
T PRK02102 129 GLTDEWHPTQMLADFMTMKEHFGPLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKET 208 (331)
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHc
Confidence 998899999999999999999999999999999998 78999999999999999999999999999988876653 4
Q ss_pred CCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHh-cCCCcEEeeCCCC------------
Q 024871 156 GISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKL-AGPKAYFMHCLPA------------ 222 (261)
Q Consensus 156 g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~-a~~~~~~mH~lP~------------ 222 (261)
| .++++++|+++|+++||||||++|.+|+++.+.+++.+++.+|+||+++|+. +++|++||||||+
T Consensus 209 g-~~~~~~~d~~ea~~~aDvvyt~~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~lP~~~~~~~~~~~~~ 287 (331)
T PRK02102 209 G-AKITITEDPEEAVKGADVIYTDVWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCLPAFHDTETKVGKEI 287 (331)
T ss_pred C-CeEEEEcCHHHHhCCCCEEEEcCcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCCCCCcccccchhhhh
Confidence 5 5799999999999999999999999998765555677889999999999994 7999999999999
Q ss_pred -----CCCcccccccccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 223 -----ERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 223 -----~rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
+||.||+++|+++|+|+||+||+||+|+|||||++++|
T Consensus 288 ~~~~~~rg~EI~~ev~d~p~s~if~Qa~Nrl~vr~AvL~~~l~ 330 (331)
T PRK02102 288 AEKYGLKGLEVTDEVFESKYSIVFDEAENRMHTIKAVMVATLG 330 (331)
T ss_pred hhhcCCCceEecHHHhCCCcchhHhHHhccHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999997
No 10
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=100.00 E-value=8.6e-88 Score=615.75 Aligned_cols=258 Identities=59% Similarity=0.974 Sum_probs=245.4
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||.|+++|||+++++++++|+++||||++||+++||+|+|+||+||+.++.++++++++++||||
T Consensus 46 v~~lF~e~STRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~~l~~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 125 (304)
T PRK00779 46 LAMIFEKPSTRTRVSFEVGMAQLGGHAIFLSPRDTQLGRGEPIEDTARVLSRYVDAIMIRTFEHETLEELAEYSTVPVIN 125 (304)
T ss_pred EEEEecCCCchHHHHHHHHHHHcCCcEEEECcccccCCCCcCHHHHHHHHHHhCCEEEEcCCChhHHHHHHHhCCCCEEe
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHH-HHHhCCCe
Q 024871 81 GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEK-ARKAGISK 159 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~-~~~~g~~~ 159 (261)
|+++.+||||+|+|+|||+|++|+++|+||+||||.+||+||++.+++++|+++++++|++++|+++++++ +++.| ++
T Consensus 126 ag~~~~HPtQaL~Dl~Ti~e~~g~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g-~~ 204 (304)
T PRK00779 126 GLTDLSHPCQILADLLTIYEHRGSLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETG-AS 204 (304)
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcC-Ce
Confidence 99999999999999999999999999999999999999999999999999999999999999999888776 56677 58
Q ss_pred EEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccCCCcc
Q 024871 160 IEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSI 239 (261)
Q Consensus 160 i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~~s~ 239 (261)
+++++|+++++++|||||+++|.++++.....++.+++.+|+||+++|+.++++++||||||++||+||+++|+++|+|+
T Consensus 205 ~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHplP~~R~~Ei~~~V~~~p~s~ 284 (304)
T PRK00779 205 IEVTHDPKEAVKGADVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCLPAHRGEEVTDEVIDGPQSV 284 (304)
T ss_pred EEEEcCHHHHhCCCCEEEecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCCCccCCCcccHHHhCCCcch
Confidence 99999999999999999999999988644444567888999999999999999999999999999999999999999999
Q ss_pred hHhHHhccHHHHHHHHHHHh
Q 024871 240 VFPQAENRMHAQNAIMLHAL 259 (261)
Q Consensus 240 ~~~Qa~N~l~~r~All~~~l 259 (261)
||+||+||+|+|||||+++|
T Consensus 285 ~~~Qa~n~~~vrmAlL~~~l 304 (304)
T PRK00779 285 VWDEAENRLHAQKALLAWLL 304 (304)
T ss_pred HHHHHhccHHHHHHHHHHhC
Confidence 99999999999999999875
No 11
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=100.00 E-value=1.6e-87 Score=620.53 Aligned_cols=258 Identities=43% Similarity=0.678 Sum_probs=243.0
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||.|+++|||+++++++++|+++||||++||+|+||+|+|+||+||+.++.++++|+++++||||
T Consensus 49 v~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~y~D~iv~R~~~~~~~~~~a~~~~vPVIN 128 (334)
T PRK01713 49 IALIFEKTSTRTRCAFEVAAYDQGAQVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQSIVNELAEYAGVPVFN 128 (334)
T ss_pred EEEEeCCCCchHHHHHHHHHHHcCCeEEEcCCccccCCCCcCHHHHHHHHHHhCCEEEEEcCchHHHHHHHHhCCCCEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCC-CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH----
Q 024871 81 GLTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK---- 154 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~-~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~---- 154 (261)
|+++.+||||+|+|+|||+|++| .++|+||+||||. +||+|||+.+++++|+++++++|++|.|++++++++++
T Consensus 129 a~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~ 208 (334)
T PRK01713 129 GLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKE 208 (334)
T ss_pred CCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHH
Confidence 99999999999999999999998 6999999999997 78999999999999999999999999999988765544
Q ss_pred hCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHH-HHHHHhhhcCCcccHHHHHhc-CCCcEEeeCCCCC---------
Q 024871 155 AGISKIEITNDPKEVVQGADVVYSDVWASMGQKEE-AAYRKQAFQGFQVDEFLMKLA-GPKAYFMHCLPAE--------- 223 (261)
Q Consensus 155 ~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~-~~~~~~~~~~y~v~~~~~~~a-~~~~~~mH~lP~~--------- 223 (261)
.| .++++++|+++++++|||||||+|.+|+++.+ .+++.+++.+|+||+++|+.+ +++++||||||++
T Consensus 209 ~g-~~~~~~~d~~~a~~~aDvVyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~lP~~~~~~~~~~~ 287 (334)
T PRK01713 209 SG-ARITVTDDIDKAVKGVDFVHTDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCLPAFHNSETKVGR 287 (334)
T ss_pred cC-CeEEEEcCHHHHhCCCCEEEEcceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCCCCCCCccccccc
Confidence 46 57999999999999999999999999987543 455677899999999999997 7999999999995
Q ss_pred ----------CCcccccccccCCCcchHhHHhccHHHHHHHHHHHh
Q 024871 224 ----------RGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHAL 259 (261)
Q Consensus 224 ----------rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l 259 (261)
||+||+++|+++|+|++|+||+||+|+|||||++++
T Consensus 288 ~~~~~~~~~~rg~Ei~~~V~d~~~s~i~~QaeNrl~~~kAvl~~~~ 333 (334)
T PRK01713 288 QIAEKYPELANGIEVTEDVFESPMNIAFEQAENRMHTIKAVMVASL 333 (334)
T ss_pred cchhhhcccCCCcEECHHHhCCCcccHHHHHhchHHHHHHHHHHHh
Confidence 889999999999999999999999999999999986
No 12
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=100.00 E-value=2.4e-87 Score=611.62 Aligned_cols=254 Identities=29% Similarity=0.380 Sum_probs=240.9
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCC-CCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEE
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGP-DDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVI 79 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~-~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVI 79 (261)
++++|+|||||||+|||.|+++|||+++++++ ++|+++||||++||+++||+|+|+||+||+.++.++++++++++|||
T Consensus 42 v~~lF~~pSTRTR~SFe~A~~~LGg~~i~l~~~~~s~~~kgEsi~Dta~vls~y~D~iviR~~~~~~~~~~a~~s~vPVI 121 (301)
T TIGR00670 42 LANLFFEPSTRTRLSFETAMKRLGGDVVNFSDSETSSVAKGETLADTIKTLSGYSDAIVIRHPLEGAARLAAEVSEVPVI 121 (301)
T ss_pred EEEEeccCCchhHhHHHHHHHHcCCcEEEcCCCCcccCCCCcCHHHHHHHHHHhCCEEEEECCchhHHHHHHhhCCCCEE
Confidence 58999999999999999999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred eCCC-CCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCC--CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 80 NGLT-DYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG--NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 80 Na~~-~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~--~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
||++ +.+||||+|+|+|||+|+||+++|+||+||||+ +||+|||+.+++++|+++++++|++|++++++++++++.|
T Consensus 122 Na~~g~~~HPtQ~LaDl~Ti~e~~g~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G 201 (301)
T TIGR00670 122 NAGDGSNQHPTQTLLDLYTIYEEFGRLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKG 201 (301)
T ss_pred eCCCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcC
Confidence 9975 789999999999999999999999999999998 8999999999999999999999999998888888888887
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEeccc--CcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCccccccccc
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWA--SMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIE 234 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~--~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~ 234 (261)
.++++++|+++|+++||||||++|. +|++. +++.+++.+||||+++|+.++++++|||||| ||.||+++|++
T Consensus 202 -~~v~~~~d~~~a~~~aDvvyt~~~~~er~~~~---~~~~~~~~~y~v~~ell~~a~~~ai~mHclP--Rg~Ev~~~V~d 275 (301)
T TIGR00670 202 -IKVRETESLEEVIDEADVLYVTRIQKERFPDP---EEYEKYKGSYGITLERLEAAKKGVIIMHPLP--RVDEIDPSVDD 275 (301)
T ss_pred -CEEEEECCHHHHhCCCCEEEECCccccccCCH---HHHHHHhcCCeECHHHHhhcCCCCEEECCCC--CCcccCHHHhC
Confidence 5899999999999999999999994 45542 3467788999999999999999999999999 99999999999
Q ss_pred CCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 235 APYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 235 ~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
+|+|++|+||+||+|+|||||++++|
T Consensus 276 ~p~s~i~~QaeNrl~~~~AvL~~ll~ 301 (301)
T TIGR00670 276 TPHAKYFKQAFNGVPVRMALLSLLLG 301 (301)
T ss_pred CccchHHHHHhccHHHHHHHHHHHhC
Confidence 99999999999999999999999986
No 13
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=100.00 E-value=1.3e-85 Score=601.27 Aligned_cols=249 Identities=31% Similarity=0.391 Sum_probs=232.3
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh-ccEEEEeeCCcchHHHHhhhCCCcEE
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY-NDIIMARVFGHQDILDLAKFATVPVI 79 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~-~D~iv~R~~~~~~~~~~a~~~~vPVI 79 (261)
++++|||||||||+|||+||.+|||+++++++++++++||||++||+++||+| +|+||+||+.++.+++++++++||||
T Consensus 48 ~~~lF~~pSTRTR~SFe~A~~~LGg~~i~l~~~~~~~~kgEs~~Dta~vls~y~~D~iv~R~~~~~~~~~~a~~~~vPVI 127 (305)
T PRK00856 48 VANLFFEPSTRTRLSFELAAKRLGADVINFSASTSSVSKGETLADTIRTLSAMGADAIVIRHPQSGAARLLAESSDVPVI 127 (305)
T ss_pred EEEEeccCCcchHHHHHHHHHHcCCcEEEeCCCcccCCCCcCHHHHHHHHHhcCCCEEEEeCCChHHHHHHHHHCCCCEE
Confidence 57999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred eCCC-CCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCC--CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 80 NGLT-DYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG--NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 80 Na~~-~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~--~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
||++ +.+||||+|+|+|||+|++|+++|+||+||||. +||+|||+.+++++|+++++++|++|.|++ +
T Consensus 128 Na~~g~~~HPtQ~LaDl~Ti~e~~G~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~-~-------- 198 (305)
T PRK00856 128 NAGDGSHQHPTQALLDLLTIREEFGRLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEG-M-------- 198 (305)
T ss_pred ECCCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCccc-c--------
Confidence 9975 799999999999999999999999999999998 799999999999999999999999998764 2
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEeccc--CcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCccccccccc
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWA--SMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIE 234 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~--~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~ 234 (261)
..+++++|+++|+++||||||++|. +++++ ..+++.+++.+||||+++|+.++++++||||||++||+||+++|++
T Consensus 199 -~~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~-~~~~~~~~~~~y~v~~~ll~~a~~~~~~mHcLPa~Rg~Ev~~~V~d 276 (305)
T PRK00856 199 -PEYGVHTDLDEVIEDADVVMMLRVQKERMDGG-LLPSYEEYKRSYGLTAERLALAKPDAIVMHPGPVNRGVEIASDVAD 276 (305)
T ss_pred -cceEEECCHHHHhCCCCEEEECCccccccccc-chHHHHHHhccCccCHHHHhhcCCCCEEECCCCCCCCCccCHHHhC
Confidence 1247899999999999999999985 44442 1244567889999999999999999999999999999999999999
Q ss_pred CCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 235 APYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 235 ~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
+|+|+||+||+||+|+|||||+++||
T Consensus 277 ~p~s~~f~QAeNrl~~~~All~~~l~ 302 (305)
T PRK00856 277 GPQSVIFEQVTNGVAVRMAVLELLLG 302 (305)
T ss_pred CCcchHHHHHhcCHHHHHHHHHHHhc
Confidence 99999999999999999999999987
No 14
>KOG1504 consensus Ornithine carbamoyltransferase OTC/ARG3 [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-86 Score=579.28 Aligned_cols=259 Identities=61% Similarity=0.972 Sum_probs=251.7
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
|+|+|.++|||||+|||.|+..|||++.+++++++++++.||+.||+||+|+|+|+|++|.+.|+.+..+|++++|||||
T Consensus 83 ~amIF~KrStRTRvStEt~~~~lGg~~mfLg~~DIqlGvnEs~~DtarVlSsm~d~I~ARV~khsDi~tlak~sSvPiIN 162 (346)
T KOG1504|consen 83 MAMIFAKRSTRTRVSTETGFFLLGGHPMFLGKNDIQLGVNESLYDTARVLSSMVDIIMARVNKHSDILTLAKYSSVPIIN 162 (346)
T ss_pred eEEEEeccccceEEeechhhhhhCCcceeecchhhccccchhhHhHHHHHHHHHHHHHHHHhhhhhHHHHhhccCCceec
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCC-CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC---
Q 024871 81 GLTDYNHPCQIMADALTIIEHVGR-LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG--- 156 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g~-l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g--- 156 (261)
|++|++||+|+|+|++||.|+||. ++|+|++||||+|||+|||++++++||+++.+++|+||+|+.+++.++++.+
T Consensus 163 gL~D~~HPlQ~laD~LTi~E~f~ks~~glkvawiGD~NNvlhs~mia~ak~gih~s~atPkg~e~d~div~~akq~a~eN 242 (346)
T KOG1504|consen 163 GLCDHFHPLQILADLLTIIEHFGKSVEGLKVAWIGDGNNVLHSWMIAAAKFGIHFSCATPKGYEPDKDIVSKAKQAAEEN 242 (346)
T ss_pred ccccccChHHHHHHHHHHHHHHhccccccEEEEEccccHHHHHHHHHhhhcceEEEecCCCCCCcchHHHHHHHHHHHhc
Confidence 999999999999999999999975 9999999999999999999999999999999999999999999998877542
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAP 236 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~ 236 (261)
+.++++++|+.+|..+|||+|||+|.||||+++++.|++.|.+||||.++|+.|+|++.|||||||++ +||+|+|+++|
T Consensus 243 gsk~eltnDp~eA~~~anvlvtDtwiSMGqe~ekearlkaFqGfQV~~el~kvA~~~~~FmHCLPr~~-eEVsdeVfy~~ 321 (346)
T KOG1504|consen 243 GSKFELTNDPLEAVIGANVLVTDTWISMGQEDEKEARLKAFQGFQVTEELMKVAGPKAKFMHCLPRHP-EEVSDEVFYGP 321 (346)
T ss_pred CCEEEEecChHHhhcCCcEEEEehhhhcchHHHHHHHHHhhcCceehHHHHhhhCCCceEeeccCCCh-hhccCceeecc
Confidence 48999999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred CcchHhHHhccHHHHHHHHHHHhc
Q 024871 237 YSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 237 ~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
+|++|+|||||+|++||+|..+|+
T Consensus 322 ~SiVF~eAENR~~a~mavm~~ll~ 345 (346)
T KOG1504|consen 322 YSIVFPEAENRKWAQMAVMLHLLG 345 (346)
T ss_pred ceeecchhhhhHHHHHHHHHHHhc
Confidence 999999999999999999999886
No 15
>PLN02527 aspartate carbamoyltransferase
Probab=100.00 E-value=5.9e-85 Score=597.34 Aligned_cols=253 Identities=31% Similarity=0.402 Sum_probs=235.2
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCC--CCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcE
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGP--DDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPV 78 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~--~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPV 78 (261)
++++|+|||||||+|||.|+++|||+++++++ ++++++||||++||++|||+|+|+||+||+.++.++++++++++||
T Consensus 42 v~llF~epStRTR~SFe~A~~~LGg~~i~l~~~~~~s~~~kgEs~~Dta~vls~y~D~iviR~~~~~~~~~~a~~~~vPV 121 (306)
T PLN02527 42 MATLFYEPSTRTRLSFESAMKRLGGEVLTTENAGEFSSAAKGETLEDTIRTVEGYSDIIVLRHFESGAARRAAATAEIPV 121 (306)
T ss_pred EEEEEcCCCchhHHHHHHHHHHcCCCEEEeCCCCCccccCCCcCHHHHHHHHHHhCcEEEEECCChhHHHHHHHhCCCCE
Confidence 58999999999999999999999999999987 4689999999999999999999999999999999999999999999
Q ss_pred EeCCC-CCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCC-C-chHHHHHHHHhcC-CcEEEEeCCCCCCCCHHHHHHHHH
Q 024871 79 INGLT-DYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG-N-NIVHSWLLMASVI-PFHFVCACPKGFEPDKETVEKARK 154 (261)
Q Consensus 79 INa~~-~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~-~-~v~~S~~~~~~~~-g~~~~~~~P~~~~~~~~~~~~~~~ 154 (261)
|||++ +.+||||+|+|+|||+|++|.++|+||+||||. + ||+|||+.+++++ |+++++++|++|++++++.+.+++
T Consensus 122 INa~~g~~~HPtQ~LaDl~Ti~e~~g~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~ 201 (306)
T PLN02527 122 INAGDGPGQHPTQALLDVYTIQREIGRLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTS 201 (306)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHhCCcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHH
Confidence 99964 789999999999999999999999999999997 5 7999999999988 999999999999999999888888
Q ss_pred hCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHH----HHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCccccc
Q 024871 155 AGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAA----YRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTE 230 (261)
Q Consensus 155 ~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~----~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~ 230 (261)
.| .++++++|+++|+++||||||++| |+++.+ +..+++.+||||+++|+.++++++|||||| ||+||++
T Consensus 202 ~g-~~~~~~~d~~~a~~~aDvvyt~~~----q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHclP--Rg~Ei~~ 274 (306)
T PLN02527 202 KG-VEWEESSDLMEVASKCDVLYQTRI----QRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPLP--RLDEITT 274 (306)
T ss_pred cC-CEEEEEcCHHHHhCCCCEEEECCc----chhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCCC--CcccccH
Confidence 77 589999999999999999999875 444332 234455789999999999999999999999 8999999
Q ss_pred ccccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 231 GVIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 231 ~v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
+|+++|+|++|+||+||+|+|||||++++|
T Consensus 275 ~V~d~p~s~i~~QaeNrl~~~~All~~ll~ 304 (306)
T PLN02527 275 DVDSDPRAAYFRQAKNGLFIRMALLKLLLG 304 (306)
T ss_pred HHhCCCcchHHHHHhcCHHHHHHHHHHHhC
Confidence 999999999999999999999999999987
No 16
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=100.00 E-value=3.3e-85 Score=599.18 Aligned_cols=248 Identities=24% Similarity=0.269 Sum_probs=229.1
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh-ccEEEEeeCCcchHHHHhhh-CCCcE
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY-NDIIMARVFGHQDILDLAKF-ATVPV 78 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~-~D~iv~R~~~~~~~~~~a~~-~~vPV 78 (261)
++++|||||||||+|||+|+++|||+++++++++|+++||||++||+++||+| +|+||+||+.++.+++++++ +++||
T Consensus 48 v~~lF~epSTRTR~SFe~A~~~LGg~~~~~~~~~s~~~kgEsl~Dtarvls~y~~D~iv~R~~~~~~~~~~a~~~~~vPv 127 (310)
T PRK13814 48 VANLFFEPSTRTRNSFEIAAKRLGAMVLNPNLKISAISKGETLFDTIKTLEAMGVYFFIVRHSENETPEQIAKQLSSGVV 127 (310)
T ss_pred EEEEEecCcchhHHHHHHHHHHhCCeEEECCCccccCCCCCCHHHHHHHHHHhCCCEEEEeCCchhHHHHHHHhCCCCCe
Confidence 58999999999999999999999999999999999999999999999999999 69999999999999999998 68999
Q ss_pred EeC-CCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCC--CchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHH
Q 024871 79 ING-LTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG--NNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARK 154 (261)
Q Consensus 79 INa-~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~--~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~ 154 (261)
||| +|+.+||||+|+|+|||+|++|+++|+||+||||+ +||+|||+.+++++|+ ++++++|++|.|.+..
T Consensus 128 INag~g~~~HPtQaLaDl~Ti~e~~g~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~------ 201 (310)
T PRK13814 128 INAGDGNHQHPSQALIDLMTIKQHKPHWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVG------ 201 (310)
T ss_pred EECCcCCCCCchHHHHHHHHHHHHhCCcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccc------
Confidence 998 79999999999999999999999999999999998 7999999999999999 9999999999876432
Q ss_pred hCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHH--HHHHHhhhc-CCcccHHHHHhcCCCcEEeeCCCCCCCcccccc
Q 024871 155 AGISKIEITNDPKEVVQGADVVYSDVWASMGQKEE--AAYRKQAFQ-GFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEG 231 (261)
Q Consensus 155 ~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~--~~~~~~~~~-~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~ 231 (261)
+ ..+++++|+++|+++|||||+++|.. |+ .+.+.+.+. +|+||+++|+.++++++||||||++||+||+++
T Consensus 202 -~-~~~~~~~d~~ea~~~aDvvy~~~~~~----er~~~~~~~~~~~~~y~v~~~~l~~a~~~~i~mHcLP~~Rg~Ei~~~ 275 (310)
T PRK13814 202 -N-DSIKKFTELKPSLLNSDVIVTLRLQK----ERHDNSVDIDAFRGSFRLTPEKLYSAKPDAIVMHPGPVNREVEINSD 275 (310)
T ss_pred -c-ceEEEEcCHHHHhCCCCEEEECcccc----ccccchhHHHHhCCCcccCHHHHHhcCCCCEEECCCCCCCCCeeCHH
Confidence 1 36889999999999999999999942 22 122344555 499999999999999999999999999999999
Q ss_pred cccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 232 VIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 232 v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
|+++|+|+||+||+||+|+|||||++++|
T Consensus 276 V~d~p~s~if~QaeNrl~~r~AlL~~~l~ 304 (310)
T PRK13814 276 VADNQQSVILQQVRNGVAMRMAVLELFLL 304 (310)
T ss_pred HhCCCcchHHHHHhccHHHHHHHHHHHHh
Confidence 99999999999999999999999999987
No 17
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=100.00 E-value=2.8e-84 Score=598.91 Aligned_cols=257 Identities=38% Similarity=0.607 Sum_probs=234.1
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcC------------CCCCCCHHHHHHHHhhhccEEEEeeCCc----
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQ------------MGKREETRDAARVLCRYNDIIMARVFGH---- 64 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~------------~~kgEs~~Dt~~~ls~~~D~iv~R~~~~---- 64 (261)
++++|||||||||+|||+|+++|||++++++++++| ++||||++||++|||+|+|+||+||+.+
T Consensus 41 l~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~ss~~~e~~~g~~~~~~kgEsl~Dtarvls~~~D~iv~R~~~~g~~~ 120 (335)
T PRK04523 41 IALVFFNPSLRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFELGAVMDGETEEHIREVARVLSRYVDLIGVRAFPKFVDW 120 (335)
T ss_pred EEEEEcCCCchhHHHHHHHHHHcCCeEEEeCcccccchhhcccccccCCCCCcCHHHHHHHHHHhCcEEEEeCCcccccc
Confidence 589999999999999999999999999999988765 2699999999999999999999999975
Q ss_pred ------chHHHHhhhCCCcEEeCCCCCCChhHHHHHHHHHHHHhCCC-CCcEE--EEEcCC----CchHHHHHHHHhcCC
Q 024871 65 ------QDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRL-EGTKV--VYVGDG----NNIVHSWLLMASVIP 131 (261)
Q Consensus 65 ------~~~~~~a~~~~vPVINa~~~~~HPtQ~L~Dl~Ti~e~~g~l-~~~~i--~~vGd~----~~v~~S~~~~~~~~g 131 (261)
..++++++++++|||||+++ +||||+|+|+|||+|++|.+ +|+|| +|+||+ +||+|||+.+++++|
T Consensus 121 ~~~~~~~~~~~~a~~s~vPVINa~~~-~HPtQaLaDl~Ti~e~~g~~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g 199 (335)
T PRK04523 121 SKDRQDQVLNSFAKYSTVPVINMETI-THPCQELAHALALQEHFGTTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLG 199 (335)
T ss_pred ccchhHHHHHHHHHhCCCCEEECCCC-CChHHHHHHHHHHHHHhCCccCCCEEEEEEeccCcccccHHHHHHHHHHHHcC
Confidence 56899999999999999888 99999999999999999999 89999 788875 489999999999999
Q ss_pred cEEEEeCC-CCCCCCHHHHHHHH----HhCCCeEEEEcCHHHHhCCCCEEEEecccCcchh---HHHHHHHhhhcCCccc
Q 024871 132 FHFVCACP-KGFEPDKETVEKAR----KAGISKIEITNDPKEVVQGADVVYSDVWASMGQK---EEAAYRKQAFQGFQVD 203 (261)
Q Consensus 132 ~~~~~~~P-~~~~~~~~~~~~~~----~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~---~~~~~~~~~~~~y~v~ 203 (261)
+++++++| ++|+|++++++.++ +.| +++++++|+++|+++|||||||+|.+|++. +...+.++++.+|+||
T Consensus 200 ~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~d~~ea~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~~~y~v~ 278 (335)
T PRK04523 200 MDVTLLCPTPDYILDERYMDWAEQNAAESG-GSLTVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVD 278 (335)
T ss_pred CEEEEECCchhhCCCHHHHHHHHHHHHHcC-CeEEEEcCHHHHhCCCCEEEeceeeccccCCcccccHHHHHhCcCCcCC
Confidence 99999999 99999999887654 446 579999999999999999999999987532 2222345788999999
Q ss_pred HHHHHhcCCCcEEeeCCCCCCCcccccccccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 204 EFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 204 ~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
+++|+.++ +++||||||++||+||+++|+++|+|+||+||+||+|+|||||++++.
T Consensus 279 ~~ll~~a~-~~i~mHcLP~~Rg~Ei~~~V~d~p~s~if~QaeNrl~~r~AlL~~~l~ 334 (335)
T PRK04523 279 ERKMALTN-NGVFSHCLPLRRNVKVTDAVMDSPNCIAIDEAENRLHVQKAIMAALAS 334 (335)
T ss_pred HHHHhCCC-CCEEECCCCCCCCCeeCHHHhCCCcchHHHHHhccHHHHHHHHHHHHh
Confidence 99999874 899999999999999999999999999999999999999999999985
No 18
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=100.00 E-value=3.7e-84 Score=593.26 Aligned_cols=255 Identities=35% Similarity=0.547 Sum_probs=231.2
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||+||++|||+++++++++++++. |+++||+++||+|+|+||+||+.++.+++++++++|||||
T Consensus 46 l~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~~~~~~-~~~~dt~~vls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 124 (311)
T PRK14804 46 LAMLFQKTSTRTRVSFEVAMTEMGGHGIYLDWMASNFQL-SDIDLEARYLSRNVSVIMARLKKHEDLLVMKNGSQVPVIN 124 (311)
T ss_pred EEEEEcCCchhHHHHHHHHHHHcCCeEEEeCCCcccccc-ccHHHHHHHHHhcCCEEEEeCCChHHHHHHHHHCCCCEEE
Confidence 589999999999999999999999999999997766665 8999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhC--CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCC--HHHHHHHHHhC
Q 024871 81 GLTDYNHPCQIMADALTIIEHVG--RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPD--KETVEKARKAG 156 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g--~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~--~~~~~~~~~~g 156 (261)
|+++.+||||+|+|+|||+|++| +++|+||+||||.+||+||++.+++++|+++++++|+++.+. +...+.+++.|
T Consensus 125 ag~~~~HPtQaL~Dl~Ti~e~~g~~~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g 204 (311)
T PRK14804 125 GCDNMFHPCQSLADIMTIALDSPEIPLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKG 204 (311)
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcC
Confidence 98888999999999999999999 799999999999999999999999999999999999996411 12234455554
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchh------HHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCccccc
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQK------EEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTE 230 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~------~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~ 230 (261)
.+.+++|+++|+++|||||||+|.+|++. +..+++.+++.+||||+++|++ ++++||||||++||+||++
T Consensus 205 --~i~~~~d~~~av~~aDvvy~d~w~~~~~~~~~~~~~~~~~r~~~~~~y~v~~elm~~--~~~~vmH~lP~~Rg~Ei~~ 280 (311)
T PRK14804 205 --TLSWEMNLHKAVSHADYVYTDTWLDMEFFNDPSYADKKKQRMELMMPYQINSSLMEK--TNAKVMHDMPIHAGYEITR 280 (311)
T ss_pred --CeEEEeCHHHHhCCCCEEEeeeeEECcccCccchHHHHHHHHHhccCCeECHHHHhC--CCCeEeCCCCCCCCceeCH
Confidence 58889999999999999999999998752 2234567889999999999985 4799999999999999999
Q ss_pred ccccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 231 GVIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 231 ~v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
+|+++|+|+||+||+||+|+|||||+++|+
T Consensus 281 ~V~d~p~s~if~QaeN~l~~r~AvL~~~l~ 310 (311)
T PRK14804 281 EVVLSDRSIIFQQAENRLDAQKAVILKLLE 310 (311)
T ss_pred HHhCCCcchHHHHHhcCHHHHHHHHHHHhc
Confidence 999999999999999999999999999986
No 19
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=100.00 E-value=4.6e-84 Score=597.85 Aligned_cols=255 Identities=29% Similarity=0.440 Sum_probs=233.7
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEE-eCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEE
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIY-LGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVI 79 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~-l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVI 79 (261)
++++|||||||||+|||+||++|||++++ +++++|+++||||++||++|||+|+|+||+||+.++.+++++++++||||
T Consensus 47 v~~lF~epSTRTR~SFe~A~~~LGg~~i~~~~~~~s~~~kgEsl~Dtarvls~y~D~IviR~~~~~~~~~~a~~~~vPVI 126 (338)
T PRK08192 47 LGNLFFEPSTRTRVSFGCAFNLLGGHVRETTGMASSSLSKGESLYDTARVLSTYSDVIAMRHPDAGSVKEFAEGSRVPVI 126 (338)
T ss_pred EEEEEcCCCcchHHHHHHHHHHcCCcEEeecCcccccCCCCCCHHHHHHHHHHcCCEEEEeCCchhHHHHHHHhCCCCEE
Confidence 58999999999999999999999999996 68888999999999999999999999999999999999999999999999
Q ss_pred eCCC-CCCChhHHHHHHHHHHHHh----CCCCCcEEEEEcCC--CchHHHHHHHHh-cCCcEEEEeCCCCCCCCHHHHHH
Q 024871 80 NGLT-DYNHPCQIMADALTIIEHV----GRLEGTKVVYVGDG--NNIVHSWLLMAS-VIPFHFVCACPKGFEPDKETVEK 151 (261)
Q Consensus 80 Na~~-~~~HPtQ~L~Dl~Ti~e~~----g~l~~~~i~~vGd~--~~v~~S~~~~~~-~~g~~~~~~~P~~~~~~~~~~~~ 151 (261)
||++ +.+||||+|+|+|||+|++ |+++|+||+||||+ +||+|||+.+++ ++|+++++++|++|++++++++.
T Consensus 127 Na~~g~~~HPtQaLaDl~Ti~e~~~~~g~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~ 206 (338)
T PRK08192 127 NGGDGSNEHPTQALLDLFTIQKELAHAGRGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISD 206 (338)
T ss_pred ECCCCCCCCcHHHHHHHHHHHHHhhccCCCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHH
Confidence 9976 7999999999999999987 37999999999998 789999998755 66999999999999999999988
Q ss_pred HHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHH--HHHhhh-cCCcccHHHHH-hcCCCcEEeeCCCCCC---
Q 024871 152 ARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAA--YRKQAF-QGFQVDEFLMK-LAGPKAYFMHCLPAER--- 224 (261)
Q Consensus 152 ~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~--~~~~~~-~~y~v~~~~~~-~a~~~~~~mH~lP~~r--- 224 (261)
+++.| ..+++++|+++|+++||||||++ +|+++.+ ++.+.+ .+||||.++|+ .++++++||||||++|
T Consensus 207 ~~~~g-~~~~~~~d~~ea~~~aDvvyt~~----~q~e~~~~~~~~~~~~~~y~v~~e~l~~~a~~~ai~mHcLP~~~~~r 281 (338)
T PRK08192 207 IENAG-HKITITDQLEGNLDKADILYLTR----IQEERFPSQEEANKYRGKFRLNQSIYTQHCKSNTVIMHPLPRDSRAQ 281 (338)
T ss_pred HHHcC-CeEEEEcCHHHHHccCCEEEEcC----cccccccchHHHHHhhhccccCHHHHHhhhCCCCEEECCCCCCCCCC
Confidence 88887 58999999999999999999996 4766532 233334 56999999995 6899999999999984
Q ss_pred CcccccccccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 225 GVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 225 g~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
|+||+++|+++|+|+||+||+||+|+|||||+++||
T Consensus 282 ~~Ei~~~V~d~p~s~~f~QAeNrl~~r~AlL~~ll~ 317 (338)
T PRK08192 282 ANELDNDLNSHPNLAIFRQADNGLLIRMALFALTLG 317 (338)
T ss_pred CcEeCHHHhCCccchHHHHHhcCHHHHHHHHHHHhC
Confidence 699999999999999999999999999999999986
No 20
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=100.00 E-value=8.8e-84 Score=598.75 Aligned_cols=256 Identities=31% Similarity=0.484 Sum_probs=232.4
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeC-----CcchHHHHhhh--
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF-----GHQDILDLAKF-- 73 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~-----~~~~~~~~a~~-- 73 (261)
++++|||||||||+|||+||++|||+++++++++++++||||++||++|||+|+|+||+||+ .+..+++++++
T Consensus 45 v~~lF~epSTRTR~SFE~A~~~LGg~~i~l~~~~s~~~kgEsl~Dtarvls~y~D~Iv~R~~~~~~~~~~~l~~~a~~~~ 124 (357)
T TIGR03316 45 GISLFRDNSTRTRFSFASAMNLLGLHAQDLDEGKSQIGHGETVRETAEMISFFADGIGIRDDMYIGVGNAYMREVAKYVQ 124 (357)
T ss_pred EEEEEcCCCcchHHHHHHHHHHcCCcEEEeCCccccCCCCCCHHHHHHHHHHhCcEEEEeCCCccccccHHHHHHHHhhh
Confidence 57999999999999999999999999999999999999999999999999999999999995 45678899999
Q ss_pred ---------CCCcEEeCCCCCCChhHHHHHHHHHHHHhCC---CCCcEEEEEc--C-----CCchHHHHHHHHhcCCcEE
Q 024871 74 ---------ATVPVINGLTDYNHPCQIMADALTIIEHVGR---LEGTKVVYVG--D-----GNNIVHSWLLMASVIPFHF 134 (261)
Q Consensus 74 ---------~~vPVINa~~~~~HPtQ~L~Dl~Ti~e~~g~---l~~~~i~~vG--d-----~~~v~~S~~~~~~~~g~~~ 134 (261)
+++|||||+++.+||||+|+|+|||+|+||. ++|+||+++| | .+||+||++.++++||++|
T Consensus 125 ~~~~~~~~~s~vPVINa~~~~~HPtQaLaDl~Ti~e~~G~~~~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v 204 (357)
T TIGR03316 125 EGYKDGVLEQRPPLVNLQCDIDHPTQAMADIMTLQEKFGGIENLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDV 204 (357)
T ss_pred hccccccccCCCCEEECCCCCCCchHHHHHHHHHHHHhCCccccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEE
Confidence 9999999999999999999999999999996 7889999775 4 3589999999999999999
Q ss_pred EEeCCCCCCCCHHHHHHHH----HhCCCeEEEEcCHHHHhCCCCEEEEecccCcch-hH----------HHH--------
Q 024871 135 VCACPKGFEPDKETVEKAR----KAGISKIEITNDPKEVVQGADVVYSDVWASMGQ-KE----------EAA-------- 191 (261)
Q Consensus 135 ~~~~P~~~~~~~~~~~~~~----~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~-~~----------~~~-------- 191 (261)
++++|++|++++++++.++ +.| .++++++|+++|+++|||||||+|.||+. .+ ...
T Consensus 205 ~~~~P~~~~~~~~~~~~a~~~~~~~g-~~~~~~~d~~ea~~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (357)
T TIGR03316 205 TLAHPEGYHLLPEVIEVAKKNAAENG-GKFNIVNSMDEAFKDADIVYPKSWAPIAAMEKRTELYTGSDTEGAELLEQELL 283 (357)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHcC-CeEEEEcCHHHHhCCCCEEEECCeeccccccccchhcccchhhhhhhhhccch
Confidence 9999999999999887664 456 57899999999999999999999999871 11 111
Q ss_pred HHHhhhcCCcccHHHHHhcC-CCcEEeeCCCCC-CCc-----ccccccccCCCcchHhHHhccHHHHHHHHHH
Q 024871 192 YRKQAFQGFQVDEFLMKLAG-PKAYFMHCLPAE-RGV-----EVTEGVIEAPYSIVFPQAENRMHAQNAIMLH 257 (261)
Q Consensus 192 ~~~~~~~~y~v~~~~~~~a~-~~~~~mH~lP~~-rg~-----Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~ 257 (261)
+..+++.+|+||.++|+.++ ++++||||||++ ||+ ||+++|+++|+|+||+||+||+|+|||||++
T Consensus 284 ~~~~~~~~y~vt~e~l~~a~~~~~i~MHcLP~~~Rg~~~~~~Eit~~V~d~p~s~if~QAeNrl~~r~AlL~~ 356 (357)
T TIGR03316 284 SQNKKHKDWVCTEERMALTHDGEALYMHCLPADIRGVSCEEGEVTEEVFDGYRSVIYKEASNKPYTIAAMIAA 356 (357)
T ss_pred hHHHHhcCCeECHHHHHhcCCCCcEEECCCCCCccCcccccccccHHHhCCCccHHHHHHhhhHHHHHHhhcc
Confidence 12357889999999999998 899999999999 998 9999999999999999999999999999975
No 21
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=100.00 E-value=1.7e-82 Score=596.10 Aligned_cols=255 Identities=27% Similarity=0.401 Sum_probs=231.0
Q ss_pred EeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeC-----CcchHHHHhhhC--
Q 024871 2 SMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF-----GHQDILDLAKFA-- 74 (261)
Q Consensus 2 ~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~-----~~~~~~~~a~~~-- 74 (261)
+++|||||||||+|||+||++|||+++++++++||++||||++||+||||+|+|+||+||+ .+..++++++++
T Consensus 63 ~~lF~epSTRTR~SFE~A~~~LGg~~i~l~~~~ss~~kGEsl~DTarvLs~y~D~IviR~~~~~g~~~~~~~ela~~~~~ 142 (395)
T PRK07200 63 ISVFRDNSTRTRFSYASACNLLGLEVQDLDEGKSQIAHGETVRETANMISFMADVIGIRDDMYIGKGNAYMREVGAAVDD 142 (395)
T ss_pred EEEEcCCCchhHHHHHHHHHHcCCCEEEcCCccccCCCCCCHHHHHHHHHHhCCEEEEecCcccccccHHHHHHHHHhhh
Confidence 3699999999999999999999999999999999999999999999999999999999995 466788888864
Q ss_pred --------CC-cEEeCCCCCCChhHHHHHHHHHHHHhCC---CCCcEEEEEcC-------CCchHHHHHHHHhcCCcEEE
Q 024871 75 --------TV-PVINGLTDYNHPCQIMADALTIIEHVGR---LEGTKVVYVGD-------GNNIVHSWLLMASVIPFHFV 135 (261)
Q Consensus 75 --------~v-PVINa~~~~~HPtQ~L~Dl~Ti~e~~g~---l~~~~i~~vGd-------~~~v~~S~~~~~~~~g~~~~ 135 (261)
++ |||||+|+.+||||+|+|+|||+|++|. ++|+||+|+|| .+||+||++.+++++|++++
T Consensus 143 ~~~~~~~~~~pPVINa~~~~~HPtQaLaDl~TI~E~~G~~~~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~ 222 (395)
T PRK07200 143 GYKQGVLPQRPTLVNLQCDIDHPTQSMADLLHLIEHFGGLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVT 222 (395)
T ss_pred hcccccccCCCeEEECCCCCCCcHHHHHHHHHHHHHhCCCcccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEE
Confidence 44 6999999999999999999999999997 88899998865 46899999999999999999
Q ss_pred EeCCCCCCCCHHHHHHHH----HhCCCeEEEEcCHHHHhCCCCEEEEecccCcchh-HH------------------HHH
Q 024871 136 CACPKGFEPDKETVEKAR----KAGISKIEITNDPKEVVQGADVVYSDVWASMGQK-EE------------------AAY 192 (261)
Q Consensus 136 ~~~P~~~~~~~~~~~~~~----~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~-~~------------------~~~ 192 (261)
+++|++|++++++++.++ +.| .++++++|+++|+++|||||||+|.||++. |+ ..+
T Consensus 223 ~~~P~~~~~~~~i~~~a~~~~~~~G-~~i~~~~d~~eav~~aDvVYtd~W~sm~~~~er~~~~~~~~~~~~~~~~~~~~~ 301 (395)
T PRK07200 223 LAHPEGYDLMPEVVEVAKKNAKASG-GSFRQVNSMEEAFKDADIVYPKSWAPYKVMEERTELYRAGDHEGIKALEKELLA 301 (395)
T ss_pred EECCCccCCCHHHHHHHHHHHHHcC-CeEEEEcCHHHHhCCCCEEEEcCeeecccccccccccccccchhhhhhhhhhhH
Confidence 999999999888877654 456 579999999999999999999999998732 21 123
Q ss_pred HHhhhcCCcccHHHHHhcCCC-cEEeeCCCCC------CCcccccccccCCCcchHhHHhccHHHHHHHHHH
Q 024871 193 RKQAFQGFQVDEFLMKLAGPK-AYFMHCLPAE------RGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLH 257 (261)
Q Consensus 193 ~~~~~~~y~v~~~~~~~a~~~-~~~mH~lP~~------rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~ 257 (261)
+.+++.+||||+++|+.++++ ++||||||++ ||+||+++|+|+|+|+||+||+||+|+|||+|+.
T Consensus 302 ~~~~~~~y~v~~elm~~a~~~~ai~MHcLPa~r~~~~~rg~EIt~eV~d~p~S~if~QAeNrlh~~~Avl~~ 373 (395)
T PRK07200 302 QNAQHKDWHCTEEMMKLTKDGKALYMHCLPADISGVSCKEGEVTESVFDRYRIALYKEASWKPYIIAAMIFL 373 (395)
T ss_pred HHHHccCCCcCHHHHhccCCCCcEEECCCCCCCcccCCCCCEECHHHhCCCcchHHHHhcchHHHHHHHHHH
Confidence 467899999999999999884 9999999998 5999999999999999999999999999999987
No 22
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=100.00 E-value=2e-82 Score=599.46 Aligned_cols=255 Identities=30% Similarity=0.429 Sum_probs=237.1
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeC-CCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEE
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLG-PDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVI 79 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~-~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVI 79 (261)
++++|||||||||+|||+||++|||++++++ +++|+++||||++||++|||+|+|+||+||+.++.++++|++++||||
T Consensus 129 v~~lF~epSTRTR~SFE~A~~~LGg~~i~l~~~~~ss~~kGESi~DTarvLs~y~D~IviR~~~~~~~~e~A~~s~vPVI 208 (429)
T PRK11891 129 LGNLFFEASTRTRVSFGAAFCRLGGSVCDTTGFTFSSMAKGESIYDTSRVMSGYVDALVIRHPEQGSVAEFARATNLPVI 208 (429)
T ss_pred EEEEeccCCchhHHHHHHHHHHcCCeEEEeCCccccCCCCCCCHHHHHHHHHHhCCEEEEeCCchhHHHHHHHhCCCCEE
Confidence 5799999999999999999999999999996 578999999999999999999999999999999999999999999999
Q ss_pred eCC-CCCCChhHHHHHHHHHHHHhC----CCCCcEEEEEcCC--CchHHHHHHHHhcC-CcEEEEeCCCCCCCCHHHHHH
Q 024871 80 NGL-TDYNHPCQIMADALTIIEHVG----RLEGTKVVYVGDG--NNIVHSWLLMASVI-PFHFVCACPKGFEPDKETVEK 151 (261)
Q Consensus 80 Na~-~~~~HPtQ~L~Dl~Ti~e~~g----~l~~~~i~~vGd~--~~v~~S~~~~~~~~-g~~~~~~~P~~~~~~~~~~~~ 151 (261)
||+ |+.+||||+|+|+|||+|+|| .++|+||+||||+ +||+||++.+++.+ |++|++++|++|+++++++++
T Consensus 209 NAgdg~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~ 288 (429)
T PRK11891 209 NGGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQ 288 (429)
T ss_pred ECCCCCCCCcHHHHHHHHHHHHHhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHH
Confidence 997 699999999999999999996 3999999999998 79999999998776 999999999999999999988
Q ss_pred HHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHH--HHHHhhhcCCcccHHHHHh-cCCCcEEeeCCCCC-C--C
Q 024871 152 ARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEA--AYRKQAFQGFQVDEFLMKL-AGPKAYFMHCLPAE-R--G 225 (261)
Q Consensus 152 ~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~--~~~~~~~~~y~v~~~~~~~-a~~~~~~mH~lP~~-r--g 225 (261)
++++| +.+++++|+++|+++||||||++| |+|+. +..++++.+|+||+++|+. ++++++||||||++ | |
T Consensus 289 ~~~~G-~~v~~~~d~~eav~~ADVVYt~~~----q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHcLPr~~R~~g 363 (429)
T PRK11891 289 ISRNG-HVIEQTDDLAAGLRGADVVYATRI----QKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHPLPRDSRPGA 363 (429)
T ss_pred HHhcC-CeEEEEcCHHHHhCCCCEEEEcCc----hhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECCCCCCCCCCC
Confidence 88877 589999999999999999999985 55543 2346677889999999999 89999999999987 4 6
Q ss_pred cccccccccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 226 VEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 226 ~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
+||+++|+++|+|+||+||+||+|+|||||++++|
T Consensus 364 ~EIs~eV~d~p~S~if~QAeNrl~vr~AvL~~llg 398 (429)
T PRK11891 364 NDLSTDLNRDPRLAIFRQTDNGIPVRMAIFAVLLG 398 (429)
T ss_pred cEeCHHHhCCCcchHHHHHhccHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999986
No 23
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.5e-79 Score=549.81 Aligned_cols=253 Identities=31% Similarity=0.413 Sum_probs=233.3
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh-ccEEEEeeCCcchHHHHhhhCCC-cE
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY-NDIIMARVFGHQDILDLAKFATV-PV 78 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~-~D~iv~R~~~~~~~~~~a~~~~v-PV 78 (261)
++++|||||||||.|||.|+++|||+|+.++.++||..||||+.||+++|++| +|+||+||+..++...+|+++++ ||
T Consensus 49 v~~lFFEpSTRTr~SFE~A~krLG~~Vv~~~~~~sSs~KGEtL~DT~~tl~ayg~D~iViRH~~egaa~~~a~~~~~~pv 128 (316)
T COG0540 49 VANLFFEPSTRTRLSFETAMKRLGADVVNFSDSESSSKKGETLADTIRTLSAYGVDAIVIRHPEEGAARLLAEFSGVNPV 128 (316)
T ss_pred EEEEEecCCCchhhhHHHHHHHcCCcEEeecCCcccccccccHHHHHHHHHhhCCCEEEEeCccccHHHHHHHhcCCCce
Confidence 57999999999999999999999999999999888889999999999999999 99999999999999999999999 89
Q ss_pred EeC-CCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCC--CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHh
Q 024871 79 ING-LTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG--NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 79 INa-~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~--~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
||| +|.++||||+|+|+|||+|+||.++|+||++|||. +||+||++.++.+||.++++++|+.+.|++++++..++.
T Consensus 129 INaGDG~~qHPTQ~LLDl~TI~~~~G~~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~ 208 (316)
T COG0540 129 INAGDGSHQHPTQALLDLYTIREEFGRLDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEK 208 (316)
T ss_pred EECCCCCCCCccHHHHHHHHHHHHhCCcCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhc
Confidence 997 68999999999999999999999999999999997 689999999999999999999999999999999888887
Q ss_pred CCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHH------HHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccc
Q 024871 156 GISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAA------YRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVT 229 (261)
Q Consensus 156 g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~------~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~ 229 (261)
| ..+.+.+..+|+++++||+|++| .|+||+. +.++++.-|+++.+.+ ++++++||||||+||++||+
T Consensus 209 ~-~~~~~~~~~e~~i~~~DVl~~lR----vQ~ER~~~~~~~s~~~~y~~~~~~~~~~~--~k~~~ivmHP~PvnR~~EI~ 281 (316)
T COG0540 209 G-GVVVEHDSDEEVIEEADVLYMLR----VQKERFNDPEEYSKVKEYYKLYGLTLERL--AKPDAIVMHPLPVNRVVEIA 281 (316)
T ss_pred C-ceEEEecchhhhhccCCEEEeeh----hhHhhcCCccchHHHHHHHHHHHHHHHhh--cCCCcEEECCCCccCCCcCc
Confidence 6 35566666677999999999998 6777752 2456666666666665 89999999999999999999
Q ss_pred cccccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 230 EGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 230 ~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
++|+++|+|.||+|++||+++|||||+.+|+
T Consensus 282 ~~v~~~p~s~~f~Q~~nGV~vRMAlL~~~l~ 312 (316)
T COG0540 282 SEVDDTPQSRYFQQVKNGVAVRMALLELLLG 312 (316)
T ss_pred hhhhcchHHHHHHHHHcCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999886
No 24
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=3.5e-78 Score=582.09 Aligned_cols=258 Identities=20% Similarity=0.239 Sum_probs=229.2
Q ss_pred CEeeccCCChhhHHHHHHHHHhc-CCeEEEeCCCCcCCCCCCCHHHHHHHHhhhcc--EEEEeeCC-------cchHHHH
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLL-GGHAIYLGPDDIQMGKREETRDAARVLCRYND--IIMARVFG-------HQDILDL 70 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~L-Gg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D--~iv~R~~~-------~~~~~~~ 70 (261)
++++|||||||||+|||+||++| ||+++++++++||++||||++||++|||+|+| +||+||+. +..+.++
T Consensus 53 vallF~epSTRTR~SFE~A~~~LgGg~~i~l~~~~ssl~kGESl~DTarvLs~y~D~d~IviR~~~~g~~~~~~~~l~~~ 132 (525)
T PRK13376 53 IYIVFVEPSTRTKESFINAAKFHKNVKVNIFDSEHSSFNKQESYTDTFNMLTGYSDYSIFIVRTRLEGVCRLLEEKVSEF 132 (525)
T ss_pred EEEEEccCCchHHHHHHHHHHHcCCCcEEEcCCccccCCCCcCHHHHHHHHHHcCCCcEEEEeCCccchhHHHHHHHHHH
Confidence 47999999999999999999999 99999999999999999999999999999999 99999976 4456678
Q ss_pred hhhCCCc---EEeCC-CCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCC--CchHHHHHHHHhcCC-cEEEEeCCCCC
Q 024871 71 AKFATVP---VINGL-TDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDG--NNIVHSWLLMASVIP-FHFVCACPKGF 142 (261)
Q Consensus 71 a~~~~vP---VINa~-~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~--~~v~~S~~~~~~~~g-~~~~~~~P~~~ 142 (261)
++++++| ||||+ |+++||||+|+|+|||+|++| +++|+||+||||. +||+|||+.++++|| ++|++++|++|
T Consensus 133 a~~s~vpVp~VINAgdg~~~HPTQaLaDl~TI~E~~G~~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~ 212 (525)
T PRK13376 133 ASRNGIEVPAFINAGDGKHEHPTQELLDEFTFLEQNNFDNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEEL 212 (525)
T ss_pred HHhcCCCcceEEECCCCCCCCchHHHHHHHHHHHHcCCCcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccc
Confidence 8888866 59996 899999999999999999999 7999999999998 799999999999998 99999999999
Q ss_pred CCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCC---EEEEeccc--CcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEe
Q 024871 143 EPDKETVEKARKAGISKIEITNDPKEVVQGAD---VVYSDVWA--SMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFM 217 (261)
Q Consensus 143 ~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aD---viy~~~w~--~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~m 217 (261)
+++++++++++++| ..+++++|+++|+++|| ++|++|+. ||+++.. ++..+++.+|+||+++|+.++++++||
T Consensus 213 ~~p~~~~~~a~~~G-~~v~i~~d~~eav~~AD~tdvw~~~RiQ~Ermg~~~~-~~~~~~~~~y~vt~elm~~ak~~ai~M 290 (525)
T PRK13376 213 AMPEHYVEKMKKNG-FEVRIFSSIEEYLSQKDVAKIWYFTRLQLERMGEDIL-EKEHILRKAVTFRKEFLDKLPEGVKFY 290 (525)
T ss_pred cCCHHHHHHHHHcC-CeEEEEcCHHHHhccCCccceEEEeccccccCCCccc-hhHHHHhcCcEECHHHHhccCCCCEEE
Confidence 99999999888887 57999999999999999 23444432 7766421 123445679999999999999999999
Q ss_pred eCCCCCCCcccccccccC-CCcchHhHHhccHHHHHHHHHHHhc
Q 024871 218 HCLPAERGVEVTEGVIEA-PYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 218 H~lP~~rg~Ev~~~v~~~-~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
||||++||.|+.++++|+ |++++|+||+||+|+|||||++++|
T Consensus 291 HcLPa~Rg~Ee~~~vvD~~~~s~~f~QAeNgl~vrmAlL~~ll~ 334 (525)
T PRK13376 291 HPLPRHKVYPTIPTFLDTLPLNGWETQAINGYWVRIVLLSMLGG 334 (525)
T ss_pred CCCCCCCCCceeCHhhcCCcceeHHHHHhccHHHHHHHHHHHhC
Confidence 999999998777777777 6899999999999999999999986
No 25
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=100.00 E-value=4.4e-46 Score=311.28 Aligned_cols=151 Identities=47% Similarity=0.762 Sum_probs=132.7
Q ss_pred CCcEEEEEcCC-CchHHHHHHHHhcCCcEEEEeCCCCCC--CCHHHHHHHH----HhCCCeEEEEcCHHHHhCCCCEEEE
Q 024871 106 EGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFE--PDKETVEKAR----KAGISKIEITNDPKEVVQGADVVYS 178 (261)
Q Consensus 106 ~~~~i~~vGd~-~~v~~S~~~~~~~~g~~~~~~~P~~~~--~~~~~~~~~~----~~g~~~i~~~~d~~~a~~~aDviy~ 178 (261)
+|+||+||||. +||+|||+.++++||+++++++|+++. ++++++++++ ++| +++++++|+++++++||||||
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g-~~i~~~~~~~e~l~~aDvvy~ 79 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG-GKITITDDIEEALKGADVVYT 79 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT-TEEEEESSHHHHHTT-SEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhC-CCeEEEeCHHHhcCCCCEEEE
Confidence 68999999996 899999999999999999999999965 4457776554 455 689999999999999999999
Q ss_pred ecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccCCCcchHhHHhccHHHHHHHHHHH
Q 024871 179 DVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHA 258 (261)
Q Consensus 179 ~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~ 258 (261)
++|.|||++|+. ++.+.+.+||||.++|+.+++|++||||||++||.||+++|+++|+|++|+||+||+|+|||||+++
T Consensus 80 ~~~~s~~~~e~~-~~~~~~~~y~v~~~~m~~a~~~~i~mH~LP~~R~~Ev~~eV~~~~~s~~~~Qa~N~l~vrmAll~~l 158 (158)
T PF00185_consen 80 DRWQSMGDKERF-KRLEKFKPYQVTEELMERAKPDAIFMHPLPANRGEEVSDEVDDSPRSVYFEQAENRLHVRMALLALL 158 (158)
T ss_dssp ESSSCTTSGGHH-HHHHHHGGGSBSHHHHHTSSTT-EEEESSS--BTTSBEHHHHTSTTBHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchHHH-HHHHHhcCCccCHHHHHhcCCCcEEEeCCCCCCCceeCHhHhCCcccHHHHHHHhHHHHHHHHHHhC
Confidence 999999996665 4555666799999999999999999999999999999999999999999999999999999999875
No 26
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=100.00 E-value=1.6e-42 Score=284.88 Aligned_cols=101 Identities=48% Similarity=0.741 Sum_probs=97.0
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|+|||||||+|||.|+.+|||+++++++++++++||||++||+|+||+|+|+||+||+.++.++++|+++++||||
T Consensus 42 v~~lF~e~StRTR~SFe~A~~~LGg~~i~~~~~~s~~~k~Esl~Dtar~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 121 (142)
T PF02729_consen 42 VALLFFEPSTRTRLSFEAAANRLGGHVIYLDPSTSSLGKGESLEDTARVLSRYVDAIVIRHPSHGALEELAEHSSVPVIN 121 (142)
T ss_dssp EEEEESS--HHHHHHHHHHHHHTTCEEEEEETTTSSTTTSSEHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHCSSEEEE
T ss_pred EEEEecCCCchhhhhHHHhhhcceeEEEEECcccccCcCCCCHHHHHHHHHHhhheEEEEeccchHHHHHHHhccCCeEc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHH
Q 024871 81 GLTDYNHPCQIMADALTIIEH 101 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~ 101 (261)
|+++.+||||+|+|+|||+|+
T Consensus 122 a~~~~~HPtQaL~Dl~Ti~e~ 142 (142)
T PF02729_consen 122 AGDDHEHPTQALADLFTIREH 142 (142)
T ss_dssp EEESSBSHHHHHHHHHHHHHH
T ss_pred CcCCCCChHHHHHHHHHHhhC
Confidence 988999999999999999986
No 27
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=97.45 E-value=0.0044 Score=57.67 Aligned_cols=129 Identities=12% Similarity=0.080 Sum_probs=87.6
Q ss_pred HhhhCCCcEEeCCCCCCChhHHHHH--HHHHHH-----------------HhC--CCCCcEEEEEcCCCchHHHHHHHHh
Q 024871 70 LAKFATVPVINGLTDYNHPCQIMAD--ALTIIE-----------------HVG--RLEGTKVVYVGDGNNIVHSWLLMAS 128 (261)
Q Consensus 70 ~a~~~~vPVINa~~~~~HPtQ~L~D--l~Ti~e-----------------~~g--~l~~~~i~~vGd~~~v~~S~~~~~~ 128 (261)
.+...+++|.|+.+.+..+-..++= ++.+.+ .+. .+.|++|+++| .+++..-.+..+.
T Consensus 84 ~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG-~G~IG~~va~~l~ 162 (324)
T COG0111 84 AATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIG-LGRIGRAVAKRLK 162 (324)
T ss_pred HHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEEC-CCHHHHHHHHHHH
Confidence 4445589999997766666554433 333332 122 36699999999 5889999999999
Q ss_pred cCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHH
Q 024871 129 VIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMK 208 (261)
Q Consensus 129 ~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~ 208 (261)
.|||++....|..-... .... .+...+++++.++.+|||..-. +...+.+ --|+.+.++
T Consensus 163 afgm~v~~~d~~~~~~~------~~~~---~~~~~~~Ld~lL~~sDiv~lh~--PlT~eT~----------g~i~~~~~a 221 (324)
T COG0111 163 AFGMKVIGYDPYSPRER------AGVD---GVVGVDSLDELLAEADILTLHL--PLTPETR----------GLINAEELA 221 (324)
T ss_pred hCCCeEEEECCCCchhh------hccc---cceecccHHHHHhhCCEEEEcC--CCCcchh----------cccCHHHHh
Confidence 99999999888322111 1111 2344678999999999998853 2222221 337888888
Q ss_pred hcCCCcEEeeCC
Q 024871 209 LAGPKAYFMHCL 220 (261)
Q Consensus 209 ~a~~~~~~mH~l 220 (261)
+.|+.++|..|.
T Consensus 222 ~MK~gailIN~a 233 (324)
T COG0111 222 KMKPGAILINAA 233 (324)
T ss_pred hCCCCeEEEECC
Confidence 888888888873
No 28
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.32 E-value=0.0037 Score=59.46 Aligned_cols=97 Identities=14% Similarity=0.142 Sum_probs=68.8
Q ss_pred HHhhhCCCcEEeCCCCCCChh--HHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCC
Q 024871 69 DLAKFATVPVINGLTDYNHPC--QIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPD 145 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~HPt--Q~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~ 145 (261)
+.++..+|+|.|+-|-...+. -+++=++.+.++.| .+.|++|++||= +|+...++..+..||+++..+.|+.-..
T Consensus 75 ~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~-G~IG~~va~~l~a~G~~V~~~Dp~~~~~- 152 (381)
T PRK00257 75 DYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAEREGVDLAERTYGVVGA-GHVGGRLVRVLRGLGWKVLVCDPPRQEA- 152 (381)
T ss_pred HHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcccCCCcCcCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCccccc-
Confidence 344567899999754333332 34555666666665 499999999994 8899999999999999999887743110
Q ss_pred HHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 146 KETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 146 ~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
.+ ... ..++++.+++||+|..-
T Consensus 153 ---------~~--~~~-~~~l~ell~~aDiV~lh 174 (381)
T PRK00257 153 ---------EG--DGD-FVSLERILEECDVISLH 174 (381)
T ss_pred ---------cc--Ccc-ccCHHHHHhhCCEEEEe
Confidence 01 112 35799999999998874
No 29
>PLN03139 formate dehydrogenase; Provisional
Probab=97.21 E-value=0.0062 Score=58.03 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=67.5
Q ss_pred HHhhhCCCcEEeCCCCCCChh--HHHHHHHHHHHHh--------------------C-CCCCcEEEEEcCCCchHHHHHH
Q 024871 69 DLAKFATVPVINGLTDYNHPC--QIMADALTIIEHV--------------------G-RLEGTKVVYVGDGNNIVHSWLL 125 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~HPt--Q~L~Dl~Ti~e~~--------------------g-~l~~~~i~~vGd~~~v~~S~~~ 125 (261)
+.++..+|+|.|.-+.+..+. .+++=++.+.+++ + .++|++|++|| .+++.+..+.
T Consensus 138 ~aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG-~G~IG~~vA~ 216 (386)
T PLN03139 138 PAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVG-AGRIGRLLLQ 216 (386)
T ss_pred HHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEe-ecHHHHHHHH
Confidence 334557899999755433332 2233333332211 1 38999999999 5889999999
Q ss_pred HHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 126 MASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 126 ~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+..||+++....|... + ++. .++.| +...+++++.++++|||..-.
T Consensus 217 ~L~afG~~V~~~d~~~~-~-~~~---~~~~g---~~~~~~l~ell~~sDvV~l~l 263 (386)
T PLN03139 217 RLKPFNCNLLYHDRLKM-D-PEL---EKETG---AKFEEDLDAMLPKCDVVVINT 263 (386)
T ss_pred HHHHCCCEEEEECCCCc-c-hhh---HhhcC---ceecCCHHHHHhhCCEEEEeC
Confidence 99999999987765432 2 111 22333 234568999999999999864
No 30
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.18 E-value=0.012 Score=54.23 Aligned_cols=97 Identities=19% Similarity=0.206 Sum_probs=65.4
Q ss_pred HHhhhCCCcEEeCCCCCCChhH--HHHHHHHHHHHh-------------------------CCCCCcEEEEEcCCCchHH
Q 024871 69 DLAKFATVPVINGLTDYNHPCQ--IMADALTIIEHV-------------------------GRLEGTKVVYVGDGNNIVH 121 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~HPtQ--~L~Dl~Ti~e~~-------------------------g~l~~~~i~~vGd~~~v~~ 121 (261)
..++..+|+|.|+-+....|.- +++=++.+.+++ ..+.|++|+++| .+++..
T Consensus 80 ~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG-~G~IG~ 158 (311)
T PRK08410 80 EYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIG-LGTIGK 158 (311)
T ss_pred HHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEEC-CCHHHH
Confidence 4455678999997654444432 222233332221 147999999999 488999
Q ss_pred HHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 122 SWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 122 S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
..+..+.-||+++....|..-. . ..+ +. ..++++.++.+|+|..-
T Consensus 159 ~vA~~~~~fgm~V~~~d~~~~~--~-------~~~---~~-~~~l~ell~~sDvv~lh 203 (311)
T PRK08410 159 RVAKIAQAFGAKVVYYSTSGKN--K-------NEE---YE-RVSLEELLKTSDIISIH 203 (311)
T ss_pred HHHHHHhhcCCEEEEECCCccc--c-------ccC---ce-eecHHHHhhcCCEEEEe
Confidence 9999999999999988874211 0 112 22 34899999999999875
No 31
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.08 E-value=0.011 Score=56.70 Aligned_cols=98 Identities=15% Similarity=0.198 Sum_probs=65.6
Q ss_pred HHhhhCCCcEEeCCCCCCChh--HHHHHHHHHHHHh------------------C-CCCCcEEEEEcCCCchHHHHHHHH
Q 024871 69 DLAKFATVPVINGLTDYNHPC--QIMADALTIIEHV------------------G-RLEGTKVVYVGDGNNIVHSWLLMA 127 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~HPt--Q~L~Dl~Ti~e~~------------------g-~l~~~~i~~vGd~~~v~~S~~~~~ 127 (261)
+.++..+|+|.|.-+-...+. .+++=++.+.+++ | .|.|++|+++| .+++....+..+
T Consensus 92 ~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG-~G~IG~~vA~~~ 170 (409)
T PRK11790 92 DAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVG-YGHIGTQLSVLA 170 (409)
T ss_pred HHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEEC-CCHHHHHHHHHH
Confidence 344556899999754333222 2333334332211 1 38999999999 488999999999
Q ss_pred hcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 128 SVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 128 ~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
..||+++....|.... ..+ .+....++++.++++|+|..-
T Consensus 171 ~~fGm~V~~~d~~~~~----------~~~--~~~~~~~l~ell~~sDiVslh 210 (409)
T PRK11790 171 ESLGMRVYFYDIEDKL----------PLG--NARQVGSLEELLAQSDVVSLH 210 (409)
T ss_pred HHCCCEEEEECCCccc----------ccC--CceecCCHHHHHhhCCEEEEc
Confidence 9999999988874211 011 234456899999999999885
No 32
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.05 E-value=0.0095 Score=56.60 Aligned_cols=97 Identities=18% Similarity=0.109 Sum_probs=67.3
Q ss_pred HHhhhCCCcEEeCCCCCCCh--hHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCC
Q 024871 69 DLAKFATVPVINGLTDYNHP--CQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPD 145 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~HP--tQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~ 145 (261)
+.++..+|+|-|+-|-+..+ --+++=++.+.++.| .+.|++|++||= +|+..-++..+..||+++..+.|..-..
T Consensus 75 ~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~-G~IG~~vA~~l~a~G~~V~~~dp~~~~~- 152 (378)
T PRK15438 75 AWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERDGFSLHDRTVGIVGV-GNVGRRLQARLEALGIKTLLCDPPRADR- 152 (378)
T ss_pred HHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccCCCCcCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCccccc-
Confidence 34456789999974422221 223444555666555 499999999995 8899999999999999999888742111
Q ss_pred HHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 146 KETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 146 ~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
+ ... ...++++.+++||||..-
T Consensus 153 ----------~-~~~-~~~~L~ell~~sDiI~lh 174 (378)
T PRK15438 153 ----------G-DEG-DFRSLDELVQEADILTFH 174 (378)
T ss_pred ----------c-ccc-ccCCHHHHHhhCCEEEEe
Confidence 1 011 245899999999999953
No 33
>PRK07574 formate dehydrogenase; Provisional
Probab=96.98 E-value=0.015 Score=55.36 Aligned_cols=103 Identities=17% Similarity=0.146 Sum_probs=68.4
Q ss_pred HHhhhCCCcEEeCCCCCCChh--HHHHHHHHHHHHh--------------------C-CCCCcEEEEEcCCCchHHHHHH
Q 024871 69 DLAKFATVPVINGLTDYNHPC--QIMADALTIIEHV--------------------G-RLEGTKVVYVGDGNNIVHSWLL 125 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~HPt--Q~L~Dl~Ti~e~~--------------------g-~l~~~~i~~vGd~~~v~~S~~~ 125 (261)
+.++..+|+|.|.-+....|. .+++-++.+.+++ + .+.|++|+++|= +++....+.
T Consensus 131 ~aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~-G~IG~~vA~ 209 (385)
T PRK07574 131 QAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGA-GRIGLAVLR 209 (385)
T ss_pred HHHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECC-CHHHHHHHH
Confidence 334556899999754333333 2444455543321 1 278899999994 789999999
Q ss_pred HHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 126 MASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 126 ~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+..||+++....|... +.+. .+..| ++...+++++++++|||..-.
T Consensus 210 ~l~~fG~~V~~~dr~~~--~~~~---~~~~g---~~~~~~l~ell~~aDvV~l~l 256 (385)
T PRK07574 210 RLKPFDVKLHYTDRHRL--PEEV---EQELG---LTYHVSFDSLVSVCDVVTIHC 256 (385)
T ss_pred HHHhCCCEEEEECCCCC--chhh---HhhcC---ceecCCHHHHhhcCCEEEEcC
Confidence 99999999998876432 1211 12233 344568999999999998853
No 34
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=96.92 E-value=0.011 Score=49.93 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=72.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWAS 183 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~ 183 (261)
.+.|++|+++|= +++....+..+..||++++...|..-.. ....+.+ + ...++++.++.+|+|.... +
T Consensus 33 ~l~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~~~~-----~~~~~~~---~-~~~~l~ell~~aDiv~~~~--p 100 (178)
T PF02826_consen 33 ELRGKTVGIIGY-GRIGRAVARRLKAFGMRVIGYDRSPKPE-----EGADEFG---V-EYVSLDELLAQADIVSLHL--P 100 (178)
T ss_dssp -STTSEEEEEST-SHHHHHHHHHHHHTT-EEEEEESSCHHH-----HHHHHTT---E-EESSHHHHHHH-SEEEE-S--S
T ss_pred ccCCCEEEEEEE-cCCcCeEeeeeecCCceeEEecccCChh-----hhccccc---c-eeeehhhhcchhhhhhhhh--c
Confidence 489999999994 8899999999999999999998854211 1122333 3 3569999999999999864 2
Q ss_pred cchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccc
Q 024871 184 MGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEG 231 (261)
Q Consensus 184 ~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~ 231 (261)
...+ ...-++++.++..+++++|..+. ||.=|+++
T Consensus 101 lt~~----------T~~li~~~~l~~mk~ga~lvN~a---RG~~vde~ 135 (178)
T PF02826_consen 101 LTPE----------TRGLINAEFLAKMKPGAVLVNVA---RGELVDED 135 (178)
T ss_dssp SSTT----------TTTSBSHHHHHTSTTTEEEEESS---SGGGB-HH
T ss_pred cccc----------cceeeeeeeeeccccceEEEecc---chhhhhhh
Confidence 1221 12558999999999999999854 56544443
No 35
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=96.87 E-value=0.036 Score=51.56 Aligned_cols=128 Identities=14% Similarity=0.115 Sum_probs=76.9
Q ss_pred HHhhhCCCcEEeCCCCCCChhHH--HHHHHHHHHH---------------------hC-CCCCcEEEEEcCCCchHHHHH
Q 024871 69 DLAKFATVPVINGLTDYNHPCQI--MADALTIIEH---------------------VG-RLEGTKVVYVGDGNNIVHSWL 124 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~HPtQ~--L~Dl~Ti~e~---------------------~g-~l~~~~i~~vGd~~~v~~S~~ 124 (261)
+.++..+|+|.|+-+-...+.-- ++=++.+.++ .| .|.|++++++| .+++....+
T Consensus 83 ~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG-~G~IG~~va 161 (323)
T PRK15409 83 DALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVG-MGRIGMALA 161 (323)
T ss_pred HHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEc-ccHHHHHHH
Confidence 44456789999976544444322 2222333221 12 37899999999 488999998
Q ss_pred HHHh-cCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCccc
Q 024871 125 LMAS-VIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVD 203 (261)
Q Consensus 125 ~~~~-~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~ 203 (261)
..+. -||+++....|.. +++. ..+.| ++ ..++++.++++|+|..-. +...+.+ .-++
T Consensus 162 ~~l~~~fgm~V~~~~~~~---~~~~---~~~~~---~~-~~~l~ell~~sDvv~lh~--plt~~T~----------~li~ 219 (323)
T PRK15409 162 QRAHFGFNMPILYNARRH---HKEA---EERFN---AR-YCDLDTLLQESDFVCIIL--PLTDETH----------HLFG 219 (323)
T ss_pred HHHHhcCCCEEEEECCCC---chhh---HHhcC---cE-ecCHHHHHHhCCEEEEeC--CCChHHh----------hccC
Confidence 8887 8999998776642 1111 12233 23 348999999999998853 2222211 2345
Q ss_pred HHHHHhcCCCcEEeeC
Q 024871 204 EFLMKLAGPKAYFMHC 219 (261)
Q Consensus 204 ~~~~~~a~~~~~~mH~ 219 (261)
.+.++..|++++|.-+
T Consensus 220 ~~~l~~mk~ga~lIN~ 235 (323)
T PRK15409 220 AEQFAKMKSSAIFINA 235 (323)
T ss_pred HHHHhcCCCCeEEEEC
Confidence 5555555555555543
No 36
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.86 E-value=0.23 Score=48.04 Aligned_cols=95 Identities=14% Similarity=0.088 Sum_probs=62.9
Q ss_pred CCCcEEeC-CCCCC------C-hhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCC
Q 024871 74 ATVPVING-LTDYN------H-PCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEP 144 (261)
Q Consensus 74 ~~vPVINa-~~~~~------H-PtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~ 144 (261)
..+||||. ++..- + --|...| .|.+..+ .+.|++++++|- +++.+..+..+..+|++++++......
T Consensus 172 l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~--ai~rat~~~l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~r- 247 (425)
T PRK05476 172 LKFPAINVNDSVTKSKFDNRYGTGESLLD--GIKRATNVLIAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPIC- 247 (425)
T ss_pred CCCCEEecCCcccCccccccHHHHhhhHH--HHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchh-
Confidence 68999996 44221 2 2344333 3333323 378999999996 689999999999999998877543221
Q ss_pred CHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 145 DKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 145 ~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
...+...|. + ..+++++++++|+|++.+
T Consensus 248 ----a~~A~~~G~---~-v~~l~eal~~aDVVI~aT 275 (425)
T PRK05476 248 ----ALQAAMDGF---R-VMTMEEAAELGDIFVTAT 275 (425)
T ss_pred ----hHHHHhcCC---E-ecCHHHHHhCCCEEEECC
Confidence 122333342 2 236889999999999864
No 37
>PLN02928 oxidoreductase family protein
Probab=96.85 E-value=0.025 Score=53.13 Aligned_cols=101 Identities=14% Similarity=0.050 Sum_probs=61.3
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHH-H----HHHHHhCCCeEEEEcCHHHHhCCCCEEEE
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKET-V----EKARKAGISKIEITNDPKEVVQGADVVYS 178 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~-~----~~~~~~g~~~i~~~~d~~~a~~~aDviy~ 178 (261)
.+.|++++++| .+++....+..+..||++++...|.. ...+.. . ........... ...+++++++++|+|..
T Consensus 156 ~l~gktvGIiG-~G~IG~~vA~~l~afG~~V~~~dr~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl 232 (347)
T PLN02928 156 TLFGKTVFILG-YGAIGIELAKRLRPFGVKLLATRRSW-TSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVL 232 (347)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHhhCCCEEEEECCCC-ChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEE
Confidence 48999999999 48899999999999999999887742 111100 0 00000000001 24589999999999998
Q ss_pred ecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC
Q 024871 179 DVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC 219 (261)
Q Consensus 179 ~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~ 219 (261)
-. +...+. ..-++++.++..+++++|.-+
T Consensus 233 ~l--Plt~~T----------~~li~~~~l~~Mk~ga~lINv 261 (347)
T PLN02928 233 CC--TLTKET----------AGIVNDEFLSSMKKGALLVNI 261 (347)
T ss_pred CC--CCChHh----------hcccCHHHHhcCCCCeEEEEC
Confidence 63 111111 123555566655555555554
No 38
>PRK06487 glycerate dehydrogenase; Provisional
Probab=96.76 E-value=0.041 Score=50.93 Aligned_cols=60 Identities=13% Similarity=0.141 Sum_probs=46.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
.+.|++|+++|= +++....+..+.-||+++....|..- +. + .. ..++++.++.+|+|..-
T Consensus 145 ~l~gktvgIiG~-G~IG~~vA~~l~~fgm~V~~~~~~~~---~~--------~---~~-~~~l~ell~~sDiv~l~ 204 (317)
T PRK06487 145 ELEGKTLGLLGH-GELGGAVARLAEAFGMRVLIGQLPGR---PA--------R---PD-RLPLDELLPQVDALTLH 204 (317)
T ss_pred ccCCCEEEEECC-CHHHHHHHHHHhhCCCEEEEECCCCC---cc--------c---cc-ccCHHHHHHhCCEEEEC
Confidence 378899999994 88999999999999999988776421 10 1 11 23799999999999875
No 39
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.72 E-value=0.071 Score=48.90 Aligned_cols=126 Identities=11% Similarity=0.098 Sum_probs=79.8
Q ss_pred HHHhhhc-cEEEEeeCCcchHHHHhhhCCCcEEeCCCC---CCChhHHHHHH---HHHHHHhCCCCCcEEEEEcCCCchH
Q 024871 48 RVLCRYN-DIIMARVFGHQDILDLAKFATVPVINGLTD---YNHPCQIMADA---LTIIEHVGRLEGTKVVYVGDGNNIV 120 (261)
Q Consensus 48 ~~ls~~~-D~iv~R~~~~~~~~~~a~~~~vPVINa~~~---~~HPtQ~L~Dl---~Ti~e~~g~l~~~~i~~vGd~~~v~ 120 (261)
..++.+- ..+++=......+.+.++..++.|+|.... ...-.|.-++. ..+.+....+.|+|++++|- +++.
T Consensus 86 ~~l~~l~~~~~v~~G~~~~~~~~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~~~~~~l~g~kvlViG~-G~iG 164 (296)
T PRK08306 86 ELLELTPEHCTIFSGIANPYLKELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIEHTPITIHGSNVLVLGF-GRTG 164 (296)
T ss_pred HHHHhcCCCCEEEEecCCHHHHHHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHHhCCCCCCCCEEEEECC-cHHH
Confidence 3455553 232332334445677788889999985432 11233333332 22222234689999999996 6799
Q ss_pred HHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 121 ~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
...+..+..+|.+++++... ++..+.+++.|. .....+++.+.++++|+|+...
T Consensus 165 ~~~a~~L~~~Ga~V~v~~r~-----~~~~~~~~~~G~-~~~~~~~l~~~l~~aDiVI~t~ 218 (296)
T PRK08306 165 MTLARTLKALGANVTVGARK-----SAHLARITEMGL-SPFHLSELAEEVGKIDIIFNTI 218 (296)
T ss_pred HHHHHHHHHCCCEEEEEECC-----HHHHHHHHHcCC-eeecHHHHHHHhCCCCEEEECC
Confidence 99999999999998888654 222344556663 3333457788999999999864
No 40
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.67 E-value=0.064 Score=49.04 Aligned_cols=125 Identities=17% Similarity=0.157 Sum_probs=80.0
Q ss_pred HHHhhhc-cEEEEeeCCcchHHHHhhhCCCcEEeCCC------CCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCch
Q 024871 48 RVLCRYN-DIIMARVFGHQDILDLAKFATVPVINGLT------DYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNI 119 (261)
Q Consensus 48 ~~ls~~~-D~iv~R~~~~~~~~~~a~~~~vPVINa~~------~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v 119 (261)
..|.++- ..++.=...+..+...++..+++|++... -+.-|+-..+ +..+.+..+ ++.|++++++|- +++
T Consensus 85 ~~l~~~~~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~a-i~~al~~~~~~l~gk~v~IiG~-G~i 162 (287)
T TIGR02853 85 ELLESTKGHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGA-IMMAIEHTDFTIHGSNVMVLGF-GRT 162 (287)
T ss_pred HHHHhcCCCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHH-HHHHHHhcCCCCCCCEEEEEcC-hHH
Confidence 3455553 33444445566777788999999995321 1223443222 223334444 699999999996 779
Q ss_pred HHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 120 VHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 120 ~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
..+.+..+..+|++++++.... +-.+.+.+.|...+ ..+++++.++++|+|+...
T Consensus 163 G~avA~~L~~~G~~V~v~~R~~-----~~~~~~~~~g~~~~-~~~~l~~~l~~aDiVint~ 217 (287)
T TIGR02853 163 GMTIARTFSALGARVFVGARSS-----ADLARITEMGLIPF-PLNKLEEKVAEIDIVINTI 217 (287)
T ss_pred HHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHCCCeee-cHHHHHHHhccCCEEEECC
Confidence 9999999999999988776532 22233444453222 2346788999999999864
No 41
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.57 E-value=0.047 Score=49.99 Aligned_cols=160 Identities=16% Similarity=0.107 Sum_probs=102.7
Q ss_pred HHHHHHhcCCeEEEeC--CCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhhC-------CCcEEeC-
Q 024871 16 FETGFSLLGGHAIYLG--PDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKFA-------TVPVING- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~--~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~~-------~vPVINa- 81 (261)
=..++.++|..+.... ... ..|.+.++++-|+.= .|.|++-.+-...+ ..+-+.- ++-=+|.
T Consensus 53 k~k~~~~~Gi~~~~~~l~~~~----~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~KDVDGl~~~N~g 128 (284)
T PRK14179 53 KERSALAAGFKSEVVRLPETI----SQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPKKDVDGFHPMNTG 128 (284)
T ss_pred HHHHHHHcCCEEEEEECCCCC----CHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCccccccccCHhhHH
Confidence 3578999999876543 322 235566666666553 57888876633222 1111110 1112331
Q ss_pred ----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 82 ----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 82 ----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
+.....||-+++ ++.|.++++ +++|++|++||-.+.|..=++..+..-|.+++++..+
T Consensus 129 ~l~~~~~~~~PcTp~a-vi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---------------- 191 (284)
T PRK14179 129 HLWSGRPVMIPCTPAG-IMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---------------- 191 (284)
T ss_pred HHhCCCCCCcCCCHHH-HHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC----------------
Confidence 124478999998 778888887 6999999999986667666666666779999877211
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.++++.+++||+|++-. |..+ + ++.++ .++++++.-+.-
T Consensus 192 ------t~~l~~~~~~ADIVI~av----g~~~-----------~-v~~~~---ik~GavVIDvgi 231 (284)
T PRK14179 192 ------TRNLAEVARKADILVVAI----GRGH-----------F-VTKEF---VKEGAVVIDVGM 231 (284)
T ss_pred ------CCCHHHHHhhCCEEEEec----Cccc-----------c-CCHHH---ccCCcEEEEecc
Confidence 247899999999999974 4321 1 44444 456777776654
No 42
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.57 E-value=0.036 Score=54.08 Aligned_cols=125 Identities=16% Similarity=0.094 Sum_probs=78.2
Q ss_pred HHHHhhh--CCCcEEeCCCCCCChhHHHHHH-----HH----HHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEE
Q 024871 67 ILDLAKF--ATVPVINGLTDYNHPCQIMADA-----LT----IIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHF 134 (261)
Q Consensus 67 ~~~~a~~--~~vPVINa~~~~~HPtQ~L~Dl-----~T----i~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~ 134 (261)
+..+++. ..+||+|..+. +|..++|. .+ +.+..+ .+.|++++++|- +++.+..+..+..+|+++
T Consensus 205 l~~m~~~g~L~iPV~nv~d~---~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~-G~IGr~vA~rL~a~Ga~V 280 (476)
T PTZ00075 205 LYKMLKKGELLFPAINVNDS---VTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGY-GDVGKGCAQALRGFGARV 280 (476)
T ss_pred HHHHHHCCCCCceEEEeCCc---chHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECC-CHHHHHHHHHHHHCCCEE
Confidence 3444443 68999996432 23333332 11 122223 489999999996 579999999999999998
Q ss_pred EEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCc
Q 024871 135 VCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKA 214 (261)
Q Consensus 135 ~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~ 214 (261)
+++.+..... ..+...|. + ..+++++++.+|+|++-. +. .--|+.+.++..++++
T Consensus 281 iV~e~dp~~a-----~~A~~~G~---~-~~~leell~~ADIVI~at----Gt------------~~iI~~e~~~~MKpGA 335 (476)
T PTZ00075 281 VVTEIDPICA-----LQAAMEGY---Q-VVTLEDVVETADIFVTAT----GN------------KDIITLEHMRRMKNNA 335 (476)
T ss_pred EEEeCCchhH-----HHHHhcCc---e-eccHHHHHhcCCEEEECC----Cc------------ccccCHHHHhccCCCc
Confidence 8774432111 11223342 2 247899999999999864 21 1235666777777777
Q ss_pred EEeeCC
Q 024871 215 YFMHCL 220 (261)
Q Consensus 215 ~~mH~l 220 (261)
++.-..
T Consensus 336 iLINvG 341 (476)
T PTZ00075 336 IVGNIG 341 (476)
T ss_pred EEEEcC
Confidence 766653
No 43
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=96.56 E-value=0.029 Score=51.68 Aligned_cols=162 Identities=18% Similarity=0.205 Sum_probs=110.0
Q ss_pred HHHHHHhcCCeEEEeC-CCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcc--hHHHHhhhC-------CCcEEeC--
Q 024871 16 FETGFSLLGGHAIYLG-PDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQ--DILDLAKFA-------TVPVING-- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~-~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~--~~~~~a~~~-------~vPVINa-- 81 (261)
=..++.++|.....+. +.++ ..|.+.+.+.-|+.- .|.|++-.+-.. .-.++-+.- ++-=.|.
T Consensus 60 k~k~a~~~Gi~~~~~~l~~~~---s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~KDVDGl~~~n~g~ 136 (299)
T PLN02516 60 KRKACAEVGIKSFDVDLPENI---SEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLEKDVDGFHPLNIGK 136 (299)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcccccCccCHhhHhh
Confidence 3568899999875443 2222 245577777777664 578888776332 222222110 1112231
Q ss_pred ----C-CCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHh
Q 024871 82 ----L-TDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 82 ----~-~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
+ .....||-+.+ ++.|.+++| .++|+++++||-.+-|..=+..++..-|.++++|.-+
T Consensus 137 l~~~~~~~~~~PcTp~a-vi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------------- 200 (299)
T PLN02516 137 LAMKGREPLFLPCTPKG-CLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------------- 200 (299)
T ss_pred HhcCCCCCCCCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------
Confidence 1 24468999999 888888887 6999999999987778888887777779999988431
Q ss_pred CCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCC
Q 024871 156 GISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPA 222 (261)
Q Consensus 156 g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~ 222 (261)
+.|+++.+++||+|++-. |. +.-++.+++ ++++++.-++.-
T Consensus 201 -------T~nl~~~~~~ADIvv~Av----Gk------------~~~i~~~~v---k~gavVIDvGin 241 (299)
T PLN02516 201 -------TPDPESIVREADIVIAAA----GQ------------AMMIKGDWI---KPGAAVIDVGTN 241 (299)
T ss_pred -------CCCHHHHHhhCCEEEEcC----CC------------cCccCHHHc---CCCCEEEEeecc
Confidence 457899999999999975 43 244777775 478888888763
No 44
>PLN02494 adenosylhomocysteinase
Probab=96.56 E-value=0.036 Score=54.11 Aligned_cols=131 Identities=15% Similarity=0.086 Sum_probs=86.8
Q ss_pred CCCcEEeC-CCCCCCh-------hHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCC
Q 024871 74 ATVPVING-LTDYNHP-------CQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEP 144 (261)
Q Consensus 74 ~~vPVINa-~~~~~HP-------tQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~ 144 (261)
..+||||. ++..=|. -|.+.|-+ .+..+ .+.|++++++|- +.+.+..+..+..+|++++++......
T Consensus 214 L~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i--~r~t~i~LaGKtVvViGy-G~IGr~vA~~aka~Ga~VIV~e~dp~r- 289 (477)
T PLN02494 214 LLFPAINVNDSVTKSKFDNLYGCRHSLPDGL--MRATDVMIAGKVAVICGY-GDVGKGCAAAMKAAGARVIVTEIDPIC- 289 (477)
T ss_pred CCCCEEEEcChhhhhhhhccccccccHHHHH--HHhcCCccCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchh-
Confidence 58999995 4433232 37776654 33334 389999999996 689999999999999998877543221
Q ss_pred CHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCC
Q 024871 145 DKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAER 224 (261)
Q Consensus 145 ~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~r 224 (261)
...+...|. .. .+++++++++|++++.. +.. --++.+.++..++++++.-..= -
T Consensus 290 ----~~eA~~~G~---~v-v~leEal~~ADVVI~tT----Gt~------------~vI~~e~L~~MK~GAiLiNvGr--~ 343 (477)
T PLN02494 290 ----ALQALMEGY---QV-LTLEDVVSEADIFVTTT----GNK------------DIIMVDHMRKMKNNAIVCNIGH--F 343 (477)
T ss_pred ----hHHHHhcCC---ee-ccHHHHHhhCCEEEECC----CCc------------cchHHHHHhcCCCCCEEEEcCC--C
Confidence 112344453 22 26889999999999864 321 2256777888888888877642 2
Q ss_pred Cccccccccc
Q 024871 225 GVEVTEGVIE 234 (261)
Q Consensus 225 g~Ev~~~v~~ 234 (261)
+.||+.+-+.
T Consensus 344 ~~eID~~aL~ 353 (477)
T PLN02494 344 DNEIDMLGLE 353 (477)
T ss_pred CCccCHHHHh
Confidence 4566665443
No 45
>PLN02306 hydroxypyruvate reductase
Probab=96.49 E-value=0.11 Score=49.54 Aligned_cols=136 Identities=14% Similarity=0.108 Sum_probs=79.0
Q ss_pred HHhhhCCCcEEeCCCCCCChhH--HHHHHHHHHHHh---------------------C-CCCCcEEEEEcCCCchHHHHH
Q 024871 69 DLAKFATVPVINGLTDYNHPCQ--IMADALTIIEHV---------------------G-RLEGTKVVYVGDGNNIVHSWL 124 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~HPtQ--~L~Dl~Ti~e~~---------------------g-~l~~~~i~~vGd~~~v~~S~~ 124 (261)
+.++..+|+|.|+-+-...+.- +++=++.+.+++ | .+.|++|+++| .+++...++
T Consensus 103 ~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG-~G~IG~~vA 181 (386)
T PLN02306 103 EAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIG-AGRIGSAYA 181 (386)
T ss_pred HHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEEC-CCHHHHHHH
Confidence 4455678999997554444432 233233332111 2 37889999999 488999888
Q ss_pred HHHh-cCCcEEEEeCCCCCCCCHHHHHHHHHhC-------C--CeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHH
Q 024871 125 LMAS-VIPFHFVCACPKGFEPDKETVEKARKAG-------I--SKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRK 194 (261)
Q Consensus 125 ~~~~-~~g~~~~~~~P~~~~~~~~~~~~~~~~g-------~--~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~ 194 (261)
..+. .||+++....|..- ++........| . ..++...++++.++++|+|..-. +...+.+
T Consensus 182 ~~l~~~fGm~V~~~d~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~--Plt~~T~----- 251 (386)
T PLN02306 182 RMMVEGFKMNLIYYDLYQS---TRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHP--VLDKTTY----- 251 (386)
T ss_pred HHHHhcCCCEEEEECCCCc---hhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeC--CCChhhh-----
Confidence 8874 89999988877421 11100011111 0 01223468999999999998843 1222221
Q ss_pred hhhcCCcccHHHHHhcCCCcEEeeCC
Q 024871 195 QAFQGFQVDEFLMKLAGPKAYFMHCL 220 (261)
Q Consensus 195 ~~~~~y~v~~~~~~~a~~~~~~mH~l 220 (261)
.-|+.+.++..|++++|.-..
T Consensus 252 -----~lin~~~l~~MK~ga~lIN~a 272 (386)
T PLN02306 252 -----HLINKERLALMKKEAVLVNAS 272 (386)
T ss_pred -----hhcCHHHHHhCCCCeEEEECC
Confidence 335666666666666666543
No 46
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.46 E-value=0.041 Score=50.45 Aligned_cols=169 Identities=15% Similarity=0.169 Sum_probs=111.1
Q ss_pred CChhhHHH-HHHHHHhcCCeEEEeCC-CCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhh-------C
Q 024871 8 PSMRTRVS-FETGFSLLGGHAIYLGP-DDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKF-------A 74 (261)
Q Consensus 8 ~StRTR~S-Fe~A~~~LGg~~~~l~~-~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~-------~ 74 (261)
|+.++-.. =..++..+|..+....- .+. ..|.+.+.++-|+.= .|.|++-.+-...+ .++.+. -
T Consensus 44 ~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~---~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVD 120 (288)
T PRK14171 44 PASIIYVKNKIKNAHKIGIDTLLVNLSTTI---HTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPSKDID 120 (288)
T ss_pred ccHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccc
Confidence 34444433 36789999998755432 211 234566666666553 57888887633221 112111 1
Q ss_pred CCcEEeC------CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHH
Q 024871 75 TVPVING------LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKE 147 (261)
Q Consensus 75 ~vPVINa------~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~ 147 (261)
++--.|. ......||-+.+ ++.|.++++ +++|+++++||-.+-|..=+..++..-++++++|.-+
T Consensus 121 Gl~~~N~g~l~~g~~~~~~PcTp~a-v~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~------- 192 (288)
T PRK14171 121 GFHPLNVGYLHSGISQGFIPCTALG-CLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK------- 192 (288)
T ss_pred cCCccchhhhhcCCCCCCcCCCHHH-HHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------
Confidence 1223352 124578998888 888888887 6999999999987778777777776678999887521
Q ss_pred HHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 148 TVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 148 ~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+.+.+++||+|++-. |. +.-|+.+++ ++++++.-++-
T Consensus 193 ---------------T~~L~~~~~~ADIvV~Av----Gk------------p~~i~~~~v---k~GavVIDvGi 232 (288)
T PRK14171 193 ---------------THNLSSITSKADIVVAAI----GS------------PLKLTAEYF---NPESIVIDVGI 232 (288)
T ss_pred ---------------CCCHHHHHhhCCEEEEcc----CC------------CCccCHHHc---CCCCEEEEeec
Confidence 457888999999999975 53 234677665 47788887774
No 47
>PRK13243 glyoxylate reductase; Reviewed
Probab=96.44 E-value=0.1 Score=48.72 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=49.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+.|++|+++|= +++..+++..+..||+++....|.. .+. ...+.|. . ..++++.++++|+|..-.
T Consensus 147 ~L~gktvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~---~~~---~~~~~~~---~-~~~l~ell~~aDiV~l~l 212 (333)
T PRK13243 147 DVYGKTIGIIGF-GRIGQAVARRAKGFGMRILYYSRTR---KPE---AEKELGA---E-YRPLEELLRESDFVSLHV 212 (333)
T ss_pred CCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCC---Chh---hHHHcCC---E-ecCHHHHHhhCCEEEEeC
Confidence 378999999994 8999999999999999998887742 111 1223342 2 358999999999998853
No 48
>PRK06932 glycerate dehydrogenase; Provisional
Probab=96.41 E-value=0.085 Score=48.80 Aligned_cols=61 Identities=18% Similarity=0.175 Sum_probs=45.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
.+.|++|+++|= +++....+..+.-||+++....+.. ..+ ...+ ..++++.++++|+|..-
T Consensus 144 ~l~gktvgIiG~-G~IG~~va~~l~~fg~~V~~~~~~~---~~~-------~~~~----~~~l~ell~~sDiv~l~ 204 (314)
T PRK06932 144 DVRGSTLGVFGK-GCLGTEVGRLAQALGMKVLYAEHKG---ASV-------CREG----YTPFEEVLKQADIVTLH 204 (314)
T ss_pred ccCCCEEEEECC-CHHHHHHHHHHhcCCCEEEEECCCc---ccc-------cccc----cCCHHHHHHhCCEEEEc
Confidence 378999999994 8889999999999999998766532 000 0101 34799999999999975
No 49
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=96.41 E-value=0.092 Score=51.96 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=50.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
+.|++|+++|= +++..+.+..+..||++++...|.. .++ .+.+.| +...+++++.++++|+|..-
T Consensus 136 l~gktvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~--~~~----~~~~~g---~~~~~~l~ell~~aDvV~l~ 200 (525)
T TIGR01327 136 LYGKTLGVIGL-GRIGSIVAKRAKAFGMKVLAYDPYI--SPE----RAEQLG---VELVDDLDELLARADFITVH 200 (525)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCCC--Chh----HHHhcC---CEEcCCHHHHHhhCCEEEEc
Confidence 78899999994 8899999999999999999887742 111 123344 24456899999999999875
No 50
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=96.36 E-value=0.084 Score=49.20 Aligned_cols=90 Identities=11% Similarity=0.094 Sum_probs=60.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCc
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASM 184 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~ 184 (261)
+.|++|+++|- +++..+++..+..+|++++...|..- .. .+ .++...+++++++++|+|..-. +.
T Consensus 144 l~g~~VgIIG~-G~IG~~vA~~L~~~G~~V~~~d~~~~-----~~-----~~--~~~~~~~l~ell~~aDiVil~l--P~ 208 (330)
T PRK12480 144 VKNMTVAIIGT-GRIGAATAKIYAGFGATITAYDAYPN-----KD-----LD--FLTYKDSVKEAIKDADIISLHV--PA 208 (330)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCChh-----Hh-----hh--hhhccCCHHHHHhcCCEEEEeC--CC
Confidence 78899999994 88999999999899999988876421 00 01 1233568999999999988863 11
Q ss_pred chhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC
Q 024871 185 GQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC 219 (261)
Q Consensus 185 ~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~ 219 (261)
..+.+ .-++.+.++..+++++|.-+
T Consensus 209 t~~t~----------~li~~~~l~~mk~gavlIN~ 233 (330)
T PRK12480 209 NKESY----------HLFDKAMFDHVKKGAILVNA 233 (330)
T ss_pred cHHHH----------HHHhHHHHhcCCCCcEEEEc
Confidence 11111 11345666666666666654
No 51
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=96.33 E-value=0.032 Score=52.01 Aligned_cols=93 Identities=12% Similarity=0.119 Sum_probs=67.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWAS 183 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~ 183 (261)
+++|+|++++|- +++....+..+.-|||++....|..- +. ..+.+ .....+ +++.++++|+|..-. +
T Consensus 143 ~l~gktvGIiG~-GrIG~avA~r~~~Fgm~v~y~~~~~~-~~------~~~~~--~~~y~~-l~ell~~sDii~l~~--P 209 (324)
T COG1052 143 DLRGKTLGIIGL-GRIGQAVARRLKGFGMKVLYYDRSPN-PE------AEKEL--GARYVD-LDELLAESDIISLHC--P 209 (324)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHhcCCCEEEEECCCCC-hH------HHhhc--Cceecc-HHHHHHhCCEEEEeC--C
Confidence 478999999994 88999999999999999998887653 21 11222 134444 999999999998864 2
Q ss_pred cchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC
Q 024871 184 MGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC 219 (261)
Q Consensus 184 ~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~ 219 (261)
...+. ..-|+.+.++..|+++++.-+
T Consensus 210 lt~~T----------~hLin~~~l~~mk~ga~lVNt 235 (324)
T COG1052 210 LTPET----------RHLINAEELAKMKPGAILVNT 235 (324)
T ss_pred CChHH----------hhhcCHHHHHhCCCCeEEEEC
Confidence 22222 245888888888888888775
No 52
>PRK08605 D-lactate dehydrogenase; Validated
Probab=96.20 E-value=0.16 Score=47.24 Aligned_cols=128 Identities=18% Similarity=0.216 Sum_probs=79.7
Q ss_pred HHhhhCCCcEEeCCCCCCChh--HHHHHHHHHHHH-------------------hC-CCCCcEEEEEcCCCchHHHHHHH
Q 024871 69 DLAKFATVPVINGLTDYNHPC--QIMADALTIIEH-------------------VG-RLEGTKVVYVGDGNNIVHSWLLM 126 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~HPt--Q~L~Dl~Ti~e~-------------------~g-~l~~~~i~~vGd~~~v~~S~~~~ 126 (261)
+.++..+++|.|.-+-...+. .+++=++.+.++ .| .+.|++|++|| .+++..+++..
T Consensus 86 ~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG-~G~IG~~vA~~ 164 (332)
T PRK08605 86 ELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIG-TGRIGLAVAKI 164 (332)
T ss_pred HHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEEC-CCHHHHHHHHH
Confidence 445567899999755433332 222223332111 11 37899999999 47888888887
Q ss_pred H-hcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHH
Q 024871 127 A-SVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEF 205 (261)
Q Consensus 127 ~-~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~ 205 (261)
+ ..+|+++....|.. .+. . .. .+....+++++++++|+|..-. +..... ..-++.+
T Consensus 165 L~~~~g~~V~~~d~~~---~~~----~-~~---~~~~~~~l~ell~~aDvIvl~l--P~t~~t----------~~li~~~ 221 (332)
T PRK08605 165 FAKGYGSDVVAYDPFP---NAK----A-AT---YVDYKDTIEEAVEGADIVTLHM--PATKYN----------HYLFNAD 221 (332)
T ss_pred HHhcCCCEEEEECCCc---cHh----H-Hh---hccccCCHHHHHHhCCEEEEeC--CCCcch----------hhhcCHH
Confidence 7 56899988776642 111 1 11 1334568999999999999863 111111 1345777
Q ss_pred HHHhcCCCcEEeeCC
Q 024871 206 LMKLAGPKAYFMHCL 220 (261)
Q Consensus 206 ~~~~a~~~~~~mH~l 220 (261)
.++..+++++|..+-
T Consensus 222 ~l~~mk~gailIN~s 236 (332)
T PRK08605 222 LFKHFKKGAVFVNCA 236 (332)
T ss_pred HHhcCCCCcEEEECC
Confidence 778788888888764
No 53
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.18 E-value=0.044 Score=50.73 Aligned_cols=66 Identities=9% Similarity=0.053 Sum_probs=47.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+.|++|+++| .+++....+..+..||+++....|..-..+ +...+.-..+++++++++|+|....
T Consensus 133 ~l~g~tvgIvG-~G~IG~~vA~~l~afG~~V~~~~~~~~~~~----------~~~~~~~~~~l~e~l~~aDvvv~~l 198 (312)
T PRK15469 133 HREDFTIGILG-AGVLGSKVAQSLQTWGFPLRCWSRSRKSWP----------GVQSFAGREELSAFLSQTRVLINLL 198 (312)
T ss_pred CcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCCCCC----------CceeecccccHHHHHhcCCEEEECC
Confidence 37899999999 478888888888899999988776321111 1111111357899999999999863
No 54
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.16 E-value=1 Score=43.34 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=65.6
Q ss_pred CCCcEEeC-CCC------CCC-hhHHHHHHHHHHHHhCC-CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCC
Q 024871 74 ATVPVING-LTD------YNH-PCQIMADALTIIEHVGR-LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEP 144 (261)
Q Consensus 74 ~~vPVINa-~~~------~~H-PtQ~L~Dl~Ti~e~~g~-l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~ 144 (261)
...||||. ++. +-| --|...| .|.+..+. +.|++|+++|. +.+....+..+..+|++++++-+.
T Consensus 162 l~~Pv~~vnds~~K~~~dn~~g~g~s~~~--~i~r~t~~~l~GktVvViG~-G~IG~~va~~ak~~Ga~ViV~d~d---- 234 (413)
T cd00401 162 LKFPAINVNDSVTKSKFDNLYGCRESLID--GIKRATDVMIAGKVAVVAGY-GDVGKGCAQSLRGQGARVIVTEVD---- 234 (413)
T ss_pred CCCCEEEecchhhcccccccchhchhhHH--HHHHhcCCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECC----
Confidence 68999994 432 223 3455544 34444453 79999999996 678999999999999998776432
Q ss_pred CHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 145 DKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 145 ~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+.-.+.+++.|. ... +++++++++|+|+...
T Consensus 235 -~~R~~~A~~~G~---~~~-~~~e~v~~aDVVI~at 265 (413)
T cd00401 235 -PICALQAAMEGY---EVM-TMEEAVKEGDIFVTTT 265 (413)
T ss_pred -hhhHHHHHhcCC---EEc-cHHHHHcCCCEEEECC
Confidence 333456677773 222 4678999999999864
No 55
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.16 E-value=0.14 Score=50.69 Aligned_cols=100 Identities=20% Similarity=0.227 Sum_probs=66.2
Q ss_pred HHhhhCCCcEEeCCCCCCChhH--HHHHHHHHHHHh------------------C-CCCCcEEEEEcCCCchHHHHHHHH
Q 024871 69 DLAKFATVPVINGLTDYNHPCQ--IMADALTIIEHV------------------G-RLEGTKVVYVGDGNNIVHSWLLMA 127 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~HPtQ--~L~Dl~Ti~e~~------------------g-~l~~~~i~~vGd~~~v~~S~~~~~ 127 (261)
+.++..+|+|.|+-+....+.- +++=++.+.+++ | .+.|++|+++|= +++..+.+..+
T Consensus 81 ~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~-G~IG~~vA~~l 159 (526)
T PRK13581 81 PAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGL-GRIGSEVAKRA 159 (526)
T ss_pred HHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECC-CHHHHHHHHHH
Confidence 3345578999997544443332 233333332221 1 278999999995 78999999999
Q ss_pred hcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 128 SVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 128 ~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
..||++++...|.. +++ .+...|. +.. ++++.++++|+|..-
T Consensus 160 ~~fG~~V~~~d~~~---~~~---~~~~~g~---~~~-~l~ell~~aDiV~l~ 201 (526)
T PRK13581 160 KAFGMKVIAYDPYI---SPE---RAAQLGV---ELV-SLDELLARADFITLH 201 (526)
T ss_pred HhCCCEEEEECCCC---Chh---HHHhcCC---EEE-cHHHHHhhCCEEEEc
Confidence 99999999887742 111 2233442 333 799999999999875
No 56
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=96.12 E-value=0.18 Score=42.45 Aligned_cols=116 Identities=18% Similarity=0.184 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHH
Q 024871 90 QIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKE 168 (261)
Q Consensus 90 Q~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~ 168 (261)
|.+.|-+- +..+ .+.|++++.+|- +.+..+.+..+..+|.+++++- .++.-.-+|...| ++. .++++
T Consensus 7 ~S~~d~i~--r~t~~~l~Gk~vvV~GY-G~vG~g~A~~lr~~Ga~V~V~e-----~DPi~alqA~~dG---f~v-~~~~~ 74 (162)
T PF00670_consen 7 QSLVDGIM--RATNLMLAGKRVVVIGY-GKVGKGIARALRGLGARVTVTE-----IDPIRALQAAMDG---FEV-MTLEE 74 (162)
T ss_dssp HHHHHHHH--HHH-S--TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE------SSHHHHHHHHHTT----EE-E-HHH
T ss_pred hhHHHHHH--hcCceeeCCCEEEEeCC-CcccHHHHHHHhhCCCEEEEEE-----CChHHHHHhhhcC---cEe-cCHHH
Confidence 67777543 3333 489999999995 7899999999999999988773 2332221233345 343 37899
Q ss_pred HhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccC
Q 024871 169 VVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEA 235 (261)
Q Consensus 169 a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~ 235 (261)
+++++|+++|.+ |.+ =.|+.+.++..|+++++.--.= -..||+-+-+..
T Consensus 75 a~~~adi~vtaT----G~~------------~vi~~e~~~~mkdgail~n~Gh--~d~Eid~~~L~~ 123 (162)
T PF00670_consen 75 ALRDADIFVTAT----GNK------------DVITGEHFRQMKDGAILANAGH--FDVEIDVDALEA 123 (162)
T ss_dssp HTTT-SEEEE-S----SSS------------SSB-HHHHHHS-TTEEEEESSS--STTSBTHHHHHT
T ss_pred HHhhCCEEEECC----CCc------------cccCHHHHHHhcCCeEEeccCc--CceeEeeccccc
Confidence 999999999975 431 2368888888888988876654 345666544443
No 57
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.10 E-value=0.12 Score=47.46 Aligned_cols=161 Identities=15% Similarity=0.089 Sum_probs=105.0
Q ss_pred HHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhhC-------CCcEEeC----
Q 024871 17 ETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKFA-------TVPVING---- 81 (261)
Q Consensus 17 e~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~~-------~vPVINa---- 81 (261)
..++..+|.++..+.-... ...+.+.+.++-|+.- .|.|++-.+-...+ .++.+.- ++--+|.
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~--~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~ 131 (294)
T PRK14187 54 QRKAEMLGLRSETILLPST--ISESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTIDPEKDVDGFHNENVGRLF 131 (294)
T ss_pred HHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhHHHHh
Confidence 5688999998765432111 1234566677777665 47788877643222 2221110 1112332
Q ss_pred CC---CCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC
Q 024871 82 LT---DYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI 157 (261)
Q Consensus 82 ~~---~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~ 157 (261)
.+ ....||-+.+ ++.|.++++ +++|+++++||-.+-|..=+..++..-++++++|.-.
T Consensus 132 ~g~~~~~~~PcTp~a-vi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~----------------- 193 (294)
T PRK14187 132 TGQKKNCLIPCTPKG-CLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSA----------------- 193 (294)
T ss_pred CCCCCCCccCcCHHH-HHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCC-----------------
Confidence 12 2468998777 567777777 6999999999987778888887777778999887531
Q ss_pred CeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 158 SKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 158 ~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++.+++||+|++-. |... | ++.+++ ++++++.-++-
T Consensus 194 -----T~~l~~~~~~ADIvVsAv----Gkp~-----------~-i~~~~i---k~gaiVIDVGi 233 (294)
T PRK14187 194 -----TRDLADYCSKADILVAAV----GIPN-----------F-VKYSWI---KKGAIVIDVGI 233 (294)
T ss_pred -----CCCHHHHHhhCCEEEEcc----CCcC-----------c-cCHHHc---CCCCEEEEecc
Confidence 457888999999999975 5321 2 677665 36778777764
No 58
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.09 E-value=0.099 Score=50.19 Aligned_cols=118 Identities=15% Similarity=0.077 Sum_probs=74.1
Q ss_pred CCCcEEeC-CCCCC------Ch-hHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCC
Q 024871 74 ATVPVING-LTDYN------HP-CQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEP 144 (261)
Q Consensus 74 ~~vPVINa-~~~~~------HP-tQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~ 144 (261)
..+||||. ++..= |- .|...|- +.+..+ .+.|++|+++|- +++.+..+..+..+|++++++......
T Consensus 155 L~~Pvi~vnds~~K~~fDn~yg~g~s~~~~--i~r~t~~~l~Gk~VvViG~-G~IG~~vA~~ak~~Ga~ViV~d~dp~r- 230 (406)
T TIGR00936 155 LKFPAINVNDAYTKSLFDNRYGTGQSTIDG--ILRATNLLIAGKTVVVAGY-GWCGKGIAMRARGMGARVIVTEVDPIR- 230 (406)
T ss_pred CCCcEEEecchhhchhhhcccccchhHHHH--HHHhcCCCCCcCEEEEECC-CHHHHHHHHHHhhCcCEEEEEeCChhh-
Confidence 68999995 43222 32 3445543 333334 489999999996 779999999999999998776432111
Q ss_pred CHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC
Q 024871 145 DKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC 219 (261)
Q Consensus 145 ~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~ 219 (261)
...+...|. . ..+++++++++|++++.. +.. .-++.+.++..++.+++..-
T Consensus 231 ----~~~A~~~G~---~-v~~leeal~~aDVVItaT----G~~------------~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 231 ----ALEAAMDGF---R-VMTMEEAAKIGDIFITAT----GNK------------DVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred ----HHHHHhcCC---E-eCCHHHHHhcCCEEEECC----CCH------------HHHHHHHHhcCCCCcEEEEE
Confidence 123344452 2 236788999999998864 321 12445555556666666543
No 59
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=96.05 E-value=0.11 Score=49.05 Aligned_cols=161 Identities=16% Similarity=0.184 Sum_probs=105.7
Q ss_pred HHHHHHhcCCeEEEeC-CCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhhC-------CCcEEeC--
Q 024871 16 FETGFSLLGGHAIYLG-PDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKFA-------TVPVING-- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~-~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~~-------~vPVINa-- 81 (261)
=..++..+|.....+. +.++ ..|.+.+.+.-|+.- .|.|++-.+-...+ .++-+.- ++--.|.
T Consensus 124 k~K~~e~~GI~~~~~~lpe~~---te~ell~~I~~LN~D~~V~GIlVQlPLP~~id~~~i~~aI~P~KDVDGl~p~N~G~ 200 (364)
T PLN02616 124 KKKACDSVGINSFEVRLPEDS---TEQEVLKFISGFNNDPSVHGILVQLPLPSHMDEQNILNAVSIEKDVDGFHPLNIGR 200 (364)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHH
Confidence 3568899999875543 2211 123344455555443 47888877633222 2221110 1112331
Q ss_pred ----C-CCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHh
Q 024871 82 ----L-TDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 82 ----~-~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
+ .....||-+++ ++.|.++++ .++|+++++||-.+-|..=+..++..-+.++++|.-+
T Consensus 201 L~~g~~~~~f~PCTp~a-vielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~--------------- 264 (364)
T PLN02616 201 LAMRGREPLFVPCTPKG-CIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR--------------- 264 (364)
T ss_pred HhcCCCCCCCCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC---------------
Confidence 1 34578999988 778888887 6999999999987778888888877789999988532
Q ss_pred CCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 156 GISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 156 g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++.+++||+|++-. |.. --|+.+++ ++++++.-++-
T Consensus 265 -------T~nl~~~~r~ADIVIsAv----Gkp------------~~i~~d~v---K~GAvVIDVGI 304 (364)
T PLN02616 265 -------TKNPEEITREADIIISAV----GQP------------NMVRGSWI---KPGAVVIDVGI 304 (364)
T ss_pred -------CCCHHHHHhhCCEEEEcC----CCc------------CcCCHHHc---CCCCEEEeccc
Confidence 357888999999999975 542 22777775 47888887764
No 60
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.03 E-value=0.15 Score=46.97 Aligned_cols=160 Identities=18% Similarity=0.129 Sum_probs=101.3
Q ss_pred HHHHHHhcCCeEEE--eCCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhh-------CCCcEEeC-
Q 024871 16 FETGFSLLGGHAIY--LGPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKF-------ATVPVING- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~--l~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~-------~~vPVINa- 81 (261)
=..++.++|..+.. |+...+ .|.+.+.++-|+.- .|.|++-.+-...+ .++-+. -++--+|.
T Consensus 53 k~k~a~~~Gi~~~~~~l~~~~~----~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~KDVDGl~~~n~g 128 (296)
T PRK14188 53 KGKQTKEAGMASFEHKLPADTS----QAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPEKDVDGLHVVNAG 128 (296)
T ss_pred HHHHHHHcCCEEEEEECCCCCC----HHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcccccccCChhhHH
Confidence 35688999998644 333322 34566666666554 57888877643222 122111 11223341
Q ss_pred ----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 82 ----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 82 ----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
+.....||-+++=+ .|.|+++ .++|++|+++|-.+.+..-++..+..-|.+++++...
T Consensus 129 ~l~~~~~~~~PcTp~ai~-~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~r---------------- 191 (296)
T PRK14188 129 RLATGETALVPCTPLGCM-MLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSR---------------- 191 (296)
T ss_pred HHhCCCCCCcCCCHHHHH-HHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCC----------------
Confidence 12456899877755 4555555 7999999999988889888888887789988877321
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.++++++++||+|++-. +..+ .++..+ .++++++.-++-
T Consensus 192 ------T~~l~e~~~~ADIVIsav----g~~~------------~v~~~~---lk~GavVIDvGi 231 (296)
T PRK14188 192 ------TRDLPAVCRRADILVAAV----GRPE------------MVKGDW---IKPGATVIDVGI 231 (296)
T ss_pred ------CCCHHHHHhcCCEEEEec----CChh------------hcchhe---ecCCCEEEEcCC
Confidence 226788999999999974 4322 233333 457777777764
No 61
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.98 E-value=0.16 Score=46.61 Aligned_cols=161 Identities=16% Similarity=0.133 Sum_probs=105.5
Q ss_pred HHHHHHhcCCeEEEeCC-CCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhh-------CCCcEEeC--
Q 024871 16 FETGFSLLGGHAIYLGP-DDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKF-------ATVPVING-- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~~-~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~-------~~vPVINa-- 81 (261)
=..++..+|.......- .++ ..|.+.++++-++.- +|.|++-.+-...+ .++-+. -++--.|.
T Consensus 53 k~k~a~~~Gi~~~~~~l~~~~---~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~ 129 (286)
T PRK14175 53 KKKAAEKIGMISEIVHLEETA---TEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGK 129 (286)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCCccchHh
Confidence 45689999998765432 222 245677777777654 57888887743322 222111 12223442
Q ss_pred ---CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC
Q 024871 82 ---LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI 157 (261)
Q Consensus 82 ---~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~ 157 (261)
+.....||-+.+ ++.+.++++ +++|++++++|-.+-|..-++.++...|++++++.-+
T Consensus 130 l~~~~~~~~PcTp~a-i~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~----------------- 191 (286)
T PRK14175 130 LYIDEQTFVPCTPLG-IMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSR----------------- 191 (286)
T ss_pred HhcCCCCCCCCcHHH-HHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC-----------------
Confidence 124578996665 555666665 7999999999987779999988888889999888421
Q ss_pred CeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 158 SKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 158 ~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.++++.+++||+|+... +. +.-++.+.+ ++++++.-..-
T Consensus 192 -----t~~l~~~~~~ADIVIsAv----g~------------p~~i~~~~v---k~gavVIDvGi 231 (286)
T PRK14175 192 -----SKDMASYLKDADVIVSAV----GK------------PGLVTKDVV---KEGAVIIDVGN 231 (286)
T ss_pred -----chhHHHHHhhCCEEEECC----CC------------CcccCHHHc---CCCcEEEEcCC
Confidence 347888999999999985 42 112666654 56677777654
No 62
>PRK06436 glycerate dehydrogenase; Provisional
Probab=95.98 E-value=0.056 Score=49.84 Aligned_cols=63 Identities=19% Similarity=0.258 Sum_probs=47.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+.|++|+++|= +++....+..+..||++++...|.... .|.. ....+++++++++|+|..-.
T Consensus 119 ~L~gktvgIiG~-G~IG~~vA~~l~afG~~V~~~~r~~~~-----------~~~~--~~~~~l~ell~~aDiv~~~l 181 (303)
T PRK06436 119 LLYNKSLGILGY-GGIGRRVALLAKAFGMNIYAYTRSYVN-----------DGIS--SIYMEPEDIMKKSDFVLISL 181 (303)
T ss_pred CCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCcc-----------cCcc--cccCCHHHHHhhCCEEEECC
Confidence 478999999994 788888888888899999988774211 1211 12458999999999999853
No 63
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.95 E-value=0.16 Score=46.77 Aligned_cols=160 Identities=13% Similarity=0.089 Sum_probs=104.2
Q ss_pred HHHHHHhcCCeEEEe--CCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchHHH--Hhhh-------CCCcEEeC-
Q 024871 16 FETGFSLLGGHAIYL--GPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDILD--LAKF-------ATVPVING- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l--~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~~~--~a~~-------~~vPVINa- 81 (261)
=..++..+|..+... +... ..|.+.+.++-++.- .|.|++-.+-...+.+ +.+. -++--.|.
T Consensus 52 k~k~~~~~Gi~~~~~~l~~~~----~~~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I~p~KDVDGl~~~n~g 127 (295)
T PRK14174 52 KAKSCKEIGMNSTVIELPADT----TEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPAKDVDGFHPENLG 127 (295)
T ss_pred HHHHHHHcCCEEEEEECCCCC----CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHH
Confidence 356889999987654 3332 245666777766554 5788887764332221 1111 01112331
Q ss_pred ---CC---CCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhc----CCcEEEEeCCCCCCCCHHHHH
Q 024871 82 ---LT---DYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASV----IPFHFVCACPKGFEPDKETVE 150 (261)
Q Consensus 82 ---~~---~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~----~g~~~~~~~P~~~~~~~~~~~ 150 (261)
.+ ....||-+++ ++.+.++++ +++|+++++||-.+-|..=+..++.. -+.+++++...
T Consensus 128 ~l~~~~~~~~~~PcTp~a-il~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~---------- 196 (295)
T PRK14174 128 RLVMGHLDKCFVSCTPYG-ILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSA---------- 196 (295)
T ss_pred HHhcCCCCCCcCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCC----------
Confidence 12 4578998887 578888877 69999999999877777777666544 46777776421
Q ss_pred HHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 151 KARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 151 ~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.++++.+++||+|+.-. |.. .-++.+++ ++++++.-..-
T Consensus 197 ------------t~~l~~~~~~ADIvI~Av----g~~------------~li~~~~v---k~GavVIDVgi 236 (295)
T PRK14174 197 ------------TKDIPSYTRQADILIAAI----GKA------------RFITADMV---KPGAVVIDVGI 236 (295)
T ss_pred ------------chhHHHHHHhCCEEEEec----Ccc------------CccCHHHc---CCCCEEEEeec
Confidence 356889999999999975 431 22777776 67888877664
No 64
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.95 E-value=0.3 Score=44.80 Aligned_cols=161 Identities=15% Similarity=0.131 Sum_probs=106.2
Q ss_pred HHHHHHhcCCeEEEeC-CCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchHH--HHhhh-------CCCcEEeC--
Q 024871 16 FETGFSLLGGHAIYLG-PDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDIL--DLAKF-------ATVPVING-- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~-~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~~--~~a~~-------~~vPVINa-- 81 (261)
=..++.++|....... +.++ ..|.+.+.++-|+.- +|.|++-.+-...+. ++-+. -++--+|.
T Consensus 47 k~k~~~~~Gi~~~~~~l~~~~---t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~KDVDGl~p~n~g~ 123 (287)
T PRK14181 47 KVKKATDLGMVSKAHRLPSDA---TLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPDKDVDGLHPVNMGK 123 (287)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcccCcccCChhhHHH
Confidence 3568899999876543 2222 255677777777664 578888877433222 12111 11223342
Q ss_pred --CC--CCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcC----CcEEEEeCCCCCCCCHHHHHHH
Q 024871 82 --LT--DYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVI----PFHFVCACPKGFEPDKETVEKA 152 (261)
Q Consensus 82 --~~--~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~----g~~~~~~~P~~~~~~~~~~~~~ 152 (261)
.+ ....||-+++ ++.|.+++| .++|+++++||-.+-|..=+..++..- +.++++|.-
T Consensus 124 l~~g~~~~~~PcTp~a-vi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs------------- 189 (287)
T PRK14181 124 LLLGETDGFIPCTPAG-IIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHS------------- 189 (287)
T ss_pred HhcCCCCCCCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCC-------------
Confidence 12 3578996666 556667777 799999999998777888887776655 788887642
Q ss_pred HHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 153 RKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 153 ~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
.+.|+++.+++||+|+.-. |. +.-|+.+++ ++++++.-++-
T Consensus 190 ---------~T~~l~~~~~~ADIvV~Av----G~------------p~~i~~~~i---k~GavVIDvGi 230 (287)
T PRK14181 190 ---------QSENLTEILKTADIIIAAI----GV------------PLFIKEEMI---AEKAVIVDVGT 230 (287)
T ss_pred ---------CCCCHHHHHhhCCEEEEcc----CC------------cCccCHHHc---CCCCEEEEecc
Confidence 1457899999999999975 54 233777775 47888887765
No 65
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.89 E-value=0.05 Score=44.64 Aligned_cols=86 Identities=23% Similarity=0.245 Sum_probs=62.9
Q ss_pred HHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCC
Q 024871 95 ALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGA 173 (261)
Q Consensus 95 l~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~a 173 (261)
++.+.+++| +++|++|+++|-.+.+..-++..+..-|++++.+.-. +.|+++++++|
T Consensus 15 ~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~----------------------t~~l~~~v~~A 72 (140)
T cd05212 15 VKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWK----------------------TIQLQSKVHDA 72 (140)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCC----------------------CcCHHHHHhhC
Confidence 345556666 6999999999987888888888887778888877421 23788999999
Q ss_pred CEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 174 DVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 174 Dviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
|+|.+-. +.. ..++.+.+ ++++++.-..+
T Consensus 73 DIVvsAt----g~~------------~~i~~~~i---kpGa~Vidvg~ 101 (140)
T cd05212 73 DVVVVGS----PKP------------EKVPTEWI---KPGATVINCSP 101 (140)
T ss_pred CEEEEec----CCC------------CccCHHHc---CCCCEEEEcCC
Confidence 9999975 321 22666665 46777776655
No 66
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.87 E-value=0.22 Score=45.53 Aligned_cols=140 Identities=14% Similarity=0.087 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcCCeEEEeCC-CCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchHHH--Hh------hhC-CC-cEE
Q 024871 13 RVSFETGFSLLGGHAIYLGP-DDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDILD--LA------KFA-TV-PVI 79 (261)
Q Consensus 13 R~SFe~A~~~LGg~~~~l~~-~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~~~--~a------~~~-~v-PVI 79 (261)
.-....++.++|....+..- .+. ..|.+.+.++-|... .+.|.+-.+-...+.+ +. +.. .+ |+
T Consensus 51 ~~~~~~~~~~~Gi~~~~~~l~~~~---~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I~~aKDVdg~n~~- 126 (283)
T PRK14192 51 VRMKGNACRRVGMDSLKVELPQET---TTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCL- 126 (283)
T ss_pred HHHHHHHHHHcCCeEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHhccCHHHhcCCCCcc-
Confidence 34567789999999876543 222 145577888877776 5677776653332222 22 211 22 55
Q ss_pred eCCCC------CCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHH
Q 024871 80 NGLTD------YNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKA 152 (261)
Q Consensus 80 Na~~~------~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~ 152 (261)
| .|. ..-||-. .=++.+.++++ .++|++++++|-.+-+...++.++...|.+++++..+
T Consensus 127 n-~G~l~~~~~~~~p~T~-~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~------------ 192 (283)
T PRK14192 127 G-FGRMAMGEAAYGSATP-AGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR------------ 192 (283)
T ss_pred c-cCccccCCCcccCCcH-HHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC------------
Confidence 5 333 4567766 55666666766 6999999999986669999998888889988877421
Q ss_pred HHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 153 RKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 153 ~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+.++.+.+++||+|+.-.
T Consensus 193 ----------t~~L~~~~~~aDIvI~At 210 (283)
T PRK14192 193 ----------TQNLPELVKQADIIVGAV 210 (283)
T ss_pred ----------chhHHHHhccCCEEEEcc
Confidence 346777789999999975
No 67
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.77 E-value=0.15 Score=46.67 Aligned_cols=161 Identities=17% Similarity=0.147 Sum_probs=105.4
Q ss_pred HHHHHHhcCCeEEEeCC-CCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchHH--HHhhh-------CCCcEEeC--
Q 024871 16 FETGFSLLGGHAIYLGP-DDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDIL--DLAKF-------ATVPVING-- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~~-~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~~--~~a~~-------~~vPVINa-- 81 (261)
=..++..+|..+....- .++ ..|.+.+.++-|+.- .|.|++-.+-...+. ++-+. -++-=.|.
T Consensus 53 k~k~~~~~Gi~~~~~~l~~~~---~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~ 129 (285)
T PRK14189 53 KVKACEDNGFHSLKDRYPADL---SEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPEKDVDGFHVANAGA 129 (285)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhhH
Confidence 35688999998755432 111 245566666666554 577888776432221 11111 01112231
Q ss_pred ---CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC
Q 024871 82 ---LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI 157 (261)
Q Consensus 82 ---~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~ 157 (261)
+.....||-+++ .+.|.++++ +++|++++++|-.+-|..-+..++...|+++++|.-
T Consensus 130 l~~~~~~~~PcTp~a-ii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs------------------ 190 (285)
T PRK14189 130 LMTGQPLFRPCTPYG-VMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHS------------------ 190 (285)
T ss_pred hhCCCCCCcCCCHHH-HHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecC------------------
Confidence 124578997766 556666776 699999999998777888888888888999987631
Q ss_pred CeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 158 SKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 158 ~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
-+.|+.+.+++||+|++-. |. +.-++.+++ ++++++.-++-
T Consensus 191 ----~t~~l~~~~~~ADIVV~av----G~------------~~~i~~~~i---k~gavVIDVGi 231 (285)
T PRK14189 191 ----KTRDLAAHTRQADIVVAAV----GK------------RNVLTADMV---KPGATVIDVGM 231 (285)
T ss_pred ----CCCCHHHHhhhCCEEEEcC----CC------------cCccCHHHc---CCCCEEEEccc
Confidence 1458889999999999975 42 122666655 57888887774
No 68
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=95.75 E-value=0.12 Score=51.10 Aligned_cols=157 Identities=18% Similarity=0.125 Sum_probs=93.7
Q ss_pred HHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChh----HHHH
Q 024871 18 TGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPC----QIMA 93 (261)
Q Consensus 18 ~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPt----Q~L~ 93 (261)
.=...+|.++..+=| .|-|++|..+.=++.+.+++.|.......+.+.+.-++|.+...--+-+.| ..|+
T Consensus 182 rlL~~lGi~vn~v~p------~g~s~~dl~~l~~A~~NIv~~~~~g~~~A~~Le~~fGiP~i~~~PiG~~~T~~fL~~l~ 255 (511)
T TIGR01278 182 RLLKTLGIEVNVVAP------WGASIADLARLPAAWLNICPYREIGLMAAEYLKEKFGQPYITTTPIGVNATRRFIREIA 255 (511)
T ss_pred HHHHHCCCeEEEEeC------CCCCHHHHHhcccCcEEEEechHHHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHH
Confidence 345577888765422 477889998887778888777755555667777777899875311111222 2222
Q ss_pred HHH---H--------HHHH---------h------CCCCCcEEEEEcCCCchHHHHHHHHh-cCCcEEEEeCCCCCCCCH
Q 024871 94 DAL---T--------IIEH---------V------GRLEGTKVVYVGDGNNIVHSWLLMAS-VIPFHFVCACPKGFEPDK 146 (261)
Q Consensus 94 Dl~---T--------i~e~---------~------g~l~~~~i~~vGd~~~v~~S~~~~~~-~~g~~~~~~~P~~~~~~~ 146 (261)
+++ - +.++ + ..+.|+|++++|| ..-+.++...+. -+|++++.++...-...+
T Consensus 256 ~~~~~~g~~~~~e~~i~~e~~~~~~~~~~~r~~d~~~l~Gkrv~I~gd-~~~a~~l~~~L~~ElG~~vv~~gt~~~~~~~ 334 (511)
T TIGR01278 256 ALLNQAGADPYYESFILDGLSAVSQAAWFARSIDSQSLTGKRAFVFGD-ATHAVGMTKILARELGIHIVGAGTYCKYDAD 334 (511)
T ss_pred HHHhhcCCCCcHHHHHHhhhhhhhhHHHHHhhhhhHHhcCCeEEEEcC-cHHHHHHHHHHHHhCCCEEEecCCchhhhHH
Confidence 322 0 0000 0 1278999999998 345667777776 699998877653322223
Q ss_pred HHHHHHHHhCCCeEEEEcCHHH---HhC--CCCEEEEeccc
Q 024871 147 ETVEKARKAGISKIEITNDPKE---VVQ--GADVVYSDVWA 182 (261)
Q Consensus 147 ~~~~~~~~~g~~~i~~~~d~~~---a~~--~aDviy~~~w~ 182 (261)
.+.+.++..+ ..+.+.+|..+ .++ +.|+|..+.|.
T Consensus 335 ~~~~~~~~~~-~~~~i~dD~~ei~~~i~~~~pdliiG~~~e 374 (511)
T TIGR01278 335 WVREQVAGYV-DEVLITDDFQEVADAIAALEPELVLGTQME 374 (511)
T ss_pred HHHHHHHhcC-CCeEEeCCHHHHHHHHHhcCCCEEEEChHH
Confidence 3333344444 35666777654 333 47899987653
No 69
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.71 E-value=0.13 Score=42.51 Aligned_cols=67 Identities=18% Similarity=0.183 Sum_probs=50.3
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC-----------CCeEEEEcCHHHHhCCCCEEE
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG-----------ISKIEITNDPKEVVQGADVVY 177 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g-----------~~~i~~~~d~~~a~~~aDviy 177 (261)
||+++|- +|..+.++..++.-|.++++.+++. +..+..++.+ ..++..++|+++++++||+|+
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~~V~l~~~~~-----~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGHEVTLWGRDE-----EQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIII 74 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTEEEEEETSCH-----HHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEE
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCEEEEEeccH-----HHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEE
Confidence 7999995 8889999988888899998887754 4455454422 136788999999999999999
Q ss_pred Eecc
Q 024871 178 SDVW 181 (261)
Q Consensus 178 ~~~w 181 (261)
....
T Consensus 75 iavP 78 (157)
T PF01210_consen 75 IAVP 78 (157)
T ss_dssp E-S-
T ss_pred eccc
Confidence 8763
No 70
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=95.68 E-value=0.42 Score=45.92 Aligned_cols=156 Identities=17% Similarity=0.138 Sum_probs=89.8
Q ss_pred HHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChhHHHHHH
Q 024871 16 FETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADA 95 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQ~L~Dl 95 (261)
...=...+|.++... +..|-+++|.-+.-++-..+++.+.......+.+.+.-++|.++.. -.+..+...=|
T Consensus 184 i~~lL~~~Gl~v~~~------~~~~~~~~~i~~~~~A~lniv~~~~~~~~~a~~L~~~~GiP~~~~~--p~G~~~t~~~l 255 (430)
T cd01981 184 LKRLLHTLGIEVNVV------IPEGASVDDLNELPKAWFNIVPYREYGLSAALYLEEEFGMPSVKIT--PIGVVATARFL 255 (430)
T ss_pred HHHHHHHcCCeEEEE------EcCCCCHHHHHhhhhCeEEEEecHHHHHHHHHHHHHHhCCCeEecc--CCChHHHHHHH
Confidence 333445778877653 2346788888887777778776655555566777778899988751 22222222222
Q ss_pred HHHHHHh----------------------------------CCCCCcEEEEEcCCCchHHHHHHHHh-cCCcEEEEeCCC
Q 024871 96 LTIIEHV----------------------------------GRLEGTKVVYVGDGNNIVHSWLLMAS-VIPFHFVCACPK 140 (261)
Q Consensus 96 ~Ti~e~~----------------------------------g~l~~~~i~~vGd~~~v~~S~~~~~~-~~g~~~~~~~P~ 140 (261)
-.|.+.+ ..+.|+|++++||.. -+.++...+. -+|++++.++-.
T Consensus 256 ~~i~~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~l~gkrv~i~g~~~-~~~~l~~~L~~elG~~vv~~~~~ 334 (430)
T cd01981 256 REIQELLGIQIIPELVNVEPYIDSQTRWVSQSARSSRSIDSQNLTGKRAFVFGDAT-HVAAATRILAREMGFRVVGAGTY 334 (430)
T ss_pred HHHHHHhCCccccccCChhHHHHhccchhhhhhhhhhhhhhccccCCeEEEEcChH-HHHHHHHHHHHHcCCEEEeccCC
Confidence 2222211 237799999999843 6677777665 689988766543
Q ss_pred CCCCCHHHHHHHHHhCCCeEEEEcCHHH---HhC--CCCEEEEecc
Q 024871 141 GFEPDKETVEKARKAGISKIEITNDPKE---VVQ--GADVVYSDVW 181 (261)
Q Consensus 141 ~~~~~~~~~~~~~~~g~~~i~~~~d~~~---a~~--~aDviy~~~w 181 (261)
.-...+......++.+ ..+.+.+|..+ .++ +.|+|+.+.+
T Consensus 335 ~~~~~~~~~~~~~~~~-~~~~i~~D~~e~~~~i~~~~pdliig~~~ 379 (430)
T cd01981 335 CKEDAKWFREQATGYC-DEALITDDHTEVGDMIARTEPELIFGTQM 379 (430)
T ss_pred CccHHHHHHHHHHhcC-CceEEecCHHHHHHHHHhhCCCEEEecch
Confidence 2222222212222233 23445566543 333 4788888753
No 71
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.64 E-value=0.28 Score=45.26 Aligned_cols=159 Identities=16% Similarity=0.125 Sum_probs=101.4
Q ss_pred HHHHHhcCCeEEEe--CCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhh-------CCCcEEeC--
Q 024871 17 ETGFSLLGGHAIYL--GPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKF-------ATVPVING-- 81 (261)
Q Consensus 17 e~A~~~LGg~~~~l--~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~-------~~vPVINa-- 81 (261)
..++..+|...... +++. ..|.+.+.++-|+.- +|.|++-.+-...+ .++-+. -++-=.|.
T Consensus 55 ~k~a~~~Gi~~~~~~l~~~~----t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~ 130 (301)
T PRK14194 55 ILRAEEAGIRSLEHRLPADT----SQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPLKDVDGFHSENVGG 130 (301)
T ss_pred HHHHHHcCCEEEEEECCCCC----CHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCchhccCccChhhhhH
Confidence 45889999987543 3322 234556666666554 57888877633222 122111 01212342
Q ss_pred --CC-CCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC
Q 024871 82 --LT-DYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI 157 (261)
Q Consensus 82 --~~-~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~ 157 (261)
.+ ....||-+++ ++.|.+++| +++|++|+++|-.+.|..-++..+..-|.+++++.-.
T Consensus 131 l~~~~~~~~PcTp~a-ii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~----------------- 192 (301)
T PRK14194 131 LSQGRDVLTPCTPSG-CLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSR----------------- 192 (301)
T ss_pred HhcCCCCCCCCcHHH-HHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCC-----------------
Confidence 12 3467997666 556666666 6999999999987889988888888889999888421
Q ss_pred CeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 158 SKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 158 ~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.++.+++++||+|++-. +.. -.|+.++ .++++++.-+.-
T Consensus 193 -----t~~l~e~~~~ADIVIsav----g~~------------~~v~~~~---ik~GaiVIDvgi 232 (301)
T PRK14194 193 -----STDAKALCRQADIVVAAV----GRP------------RLIDADW---LKPGAVVIDVGI 232 (301)
T ss_pred -----CCCHHHHHhcCCEEEEec----CCh------------hcccHhh---ccCCcEEEEecc
Confidence 237899999999999975 432 1244443 456777776663
No 72
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.63 E-value=0.28 Score=44.83 Aligned_cols=160 Identities=14% Similarity=0.101 Sum_probs=108.0
Q ss_pred HHHHHHhcCCeEEEe--CCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhh-------CCCcEEeC-
Q 024871 16 FETGFSLLGGHAIYL--GPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKF-------ATVPVING- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l--~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~-------~~vPVINa- 81 (261)
=..++.++|..+... +... ..|.+.+.++-|+.- +|.|++-.+-.+.+ .++-+. -+.--+|.
T Consensus 47 k~k~~~~~Gi~~~~~~l~~~~----~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~KDVDGl~~~n~g 122 (279)
T PRK14178 47 KHRACERVGIGSVGIELPGDA----TTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPEKDVDGFHPLNLG 122 (279)
T ss_pred HHHHHHHcCCEEEEEECCCCC----CHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccCcccCChhhHH
Confidence 367899999987554 3332 245677777777664 57888877633222 111111 01112331
Q ss_pred ----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 82 ----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 82 ----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
+.....||-+++ ++.|.++++ +++|++++++|-.+.+..-++.++...|.+++++.-.
T Consensus 123 ~l~~~~~~~~PcTp~a-v~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~---------------- 185 (279)
T PRK14178 123 RLVSGLPGFAPCTPNG-IMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSK---------------- 185 (279)
T ss_pred HHhCCCCCCCCCCHHH-HHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecC----------------
Confidence 124578997666 556667776 6999999999998889999888888889998887421
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.++++.+++||+|+... +. +.-++.+++ ++++++.-..-
T Consensus 186 ------t~~L~~~~~~ADIvI~Av----gk------------~~lv~~~~v---k~GavVIDVgi 225 (279)
T PRK14178 186 ------TENLKAELRQADILVSAA----GK------------AGFITPDMV---KPGATVIDVGI 225 (279)
T ss_pred ------hhHHHHHHhhCCEEEECC----Cc------------ccccCHHHc---CCCcEEEEeec
Confidence 357889999999999985 42 123777775 67888877665
No 73
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=95.53 E-value=0.14 Score=47.93 Aligned_cols=69 Identities=23% Similarity=0.246 Sum_probs=51.2
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 103 GRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 103 g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
..++|++|++||- +++.++++..+...|+++++..++.- ...+.+++.|. .. .++++++++||+|+...
T Consensus 13 ~~L~gktIgIIG~-GsmG~AlA~~L~~sG~~Vvv~~r~~~----~s~~~A~~~G~---~~-~s~~eaa~~ADVVvLaV 81 (330)
T PRK05479 13 SLIKGKKVAIIGY-GSQGHAHALNLRDSGVDVVVGLREGS----KSWKKAEADGF---EV-LTVAEAAKWADVIMILL 81 (330)
T ss_pred hhhCCCEEEEEee-HHHHHHHHHHHHHCCCEEEEEECCch----hhHHHHHHCCC---ee-CCHHHHHhcCCEEEEcC
Confidence 3488999999995 78999999999899998876544321 22234555553 22 38899999999999864
No 74
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=95.36 E-value=0.13 Score=43.15 Aligned_cols=97 Identities=26% Similarity=0.317 Sum_probs=64.3
Q ss_pred CCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEE
Q 024871 83 TDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIE 161 (261)
Q Consensus 83 ~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~ 161 (261)
.....||-+.+= +.|.++++ +++|+++++||-.+.|..-+..++..-|++++.+...
T Consensus 12 ~~~~~PcTp~ai-i~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~--------------------- 69 (160)
T PF02882_consen 12 QPGFVPCTPLAI-IELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSK--------------------- 69 (160)
T ss_dssp TTSS--HHHHHH-HHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TT---------------------
T ss_pred CCCCcCCCHHHH-HHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCC---------------------
Confidence 457889976664 45556666 7999999999998889999988888889999887431
Q ss_pred EEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 162 ITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 162 ~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.++++.+++||+|++-. |... -|+.+.+ ++++++.-++-
T Consensus 70 -T~~l~~~~~~ADIVVsa~----G~~~------------~i~~~~i---k~gavVIDvG~ 109 (160)
T PF02882_consen 70 -TKNLQEITRRADIVVSAV----GKPN------------LIKADWI---KPGAVVIDVGI 109 (160)
T ss_dssp -SSSHHHHHTTSSEEEE-S----SSTT-------------B-GGGS----TTEEEEE--C
T ss_pred -CCcccceeeeccEEeeee----cccc------------ccccccc---cCCcEEEecCC
Confidence 367889999999999986 4321 1555544 56778776654
No 75
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.22 E-value=0.31 Score=44.69 Aligned_cols=161 Identities=16% Similarity=0.089 Sum_probs=103.9
Q ss_pred HHHHHHHhcCCeEEEe--CCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcc--hHHHHhhhC-------CCcEEeC
Q 024871 15 SFETGFSLLGGHAIYL--GPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQ--DILDLAKFA-------TVPVING 81 (261)
Q Consensus 15 SFe~A~~~LGg~~~~l--~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~--~~~~~a~~~-------~vPVINa 81 (261)
+=..++..+|...... +... ..|.+.+.++-|+.= .|.|++-.+-.. .-.++-+.- ++-=.|.
T Consensus 51 ~k~k~a~~~Gi~~~~~~l~~~~----~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~ 126 (285)
T PRK14191 51 MKIKACERVGMDSDLHTLQENT----TEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGFHPLNI 126 (285)
T ss_pred HHHHHHHHcCCEEEEEECCCCC----CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhH
Confidence 3456889999987554 3322 245566666666553 578888776432 222221110 1112331
Q ss_pred -----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHh
Q 024871 82 -----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 82 -----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
+.....||-+.+ ++.|.++++ .++|+++++||..+.|..-++.++..-|+++++|.-
T Consensus 127 g~l~~g~~~~~PcTp~a-vi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs---------------- 189 (285)
T PRK14191 127 GKLCSQLDGFVPATPMG-VMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHI---------------- 189 (285)
T ss_pred HHHhcCCCCCCCCcHHH-HHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeC----------------
Confidence 124568998877 456667776 699999999999888888888888788999987731
Q ss_pred CCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 156 GISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 156 g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
.+.|+.+.+++||+|+.-. |.. --++.+++ ++++++.-.+-
T Consensus 190 ------~t~~l~~~~~~ADIvV~Av----G~p------------~~i~~~~v---k~GavVIDvGi 230 (285)
T PRK14191 190 ------LTKDLSFYTQNADIVCVGV----GKP------------DLIKASMV---KKGAVVVDIGI 230 (285)
T ss_pred ------CcHHHHHHHHhCCEEEEec----CCC------------CcCCHHHc---CCCcEEEEeec
Confidence 1356788999999999975 431 12666655 56777776664
No 76
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.20 E-value=0.44 Score=43.94 Aligned_cols=162 Identities=17% Similarity=0.117 Sum_probs=105.8
Q ss_pred HHHHHHHhcCCeEEEeCC-CCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhh-------CCCcEEeC-
Q 024871 15 SFETGFSLLGGHAIYLGP-DDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKF-------ATVPVING- 81 (261)
Q Consensus 15 SFe~A~~~LGg~~~~l~~-~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~-------~~vPVINa- 81 (261)
+=..++..+|.+.....- .++ ..|.+.++++-|+.- .|.|++-.+-...+ .++.+. -++--+|.
T Consensus 51 ~k~k~~~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~g 127 (297)
T PRK14167 51 MKQRDCEEVGIEAIDVEIDPDA---PAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPAKDVDGFHPENVG 127 (297)
T ss_pred HHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcccCcccCChhhhH
Confidence 345689999998755432 222 245677777777765 47888887743322 222211 11222342
Q ss_pred ----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcC----CcEEEEeCCCCCCCCHHHHHHH
Q 024871 82 ----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVI----PFHFVCACPKGFEPDKETVEKA 152 (261)
Q Consensus 82 ----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~----g~~~~~~~P~~~~~~~~~~~~~ 152 (261)
+...+.||-+++ ++.|.++++ .++|+++++||-.+-|..=++.++..- +.++++|.-+
T Consensus 128 ~l~~g~~~~~PcTp~a-vi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~------------ 194 (297)
T PRK14167 128 RLVAGDARFKPCTPHG-IQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR------------ 194 (297)
T ss_pred HHhCCCCCCCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC------------
Confidence 124578996655 667777777 699999999998777888887766544 7888877421
Q ss_pred HHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 153 RKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 153 ~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++..++||+|++-. |.. --|+.+++ ++++++.-.+-
T Consensus 195 ----------T~~l~~~~~~ADIvIsAv----Gkp------------~~i~~~~i---k~gaiVIDvGi 234 (297)
T PRK14167 195 ----------TDDLAAKTRRADIVVAAA----GVP------------ELIDGSML---SEGATVIDVGI 234 (297)
T ss_pred ----------CCCHHHHHhhCCEEEEcc----CCc------------CccCHHHc---CCCCEEEEccc
Confidence 457888999999999964 532 23676665 46788877763
No 77
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=95.16 E-value=0.18 Score=49.79 Aligned_cols=156 Identities=18% Similarity=0.170 Sum_probs=95.2
Q ss_pred HHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChh----HHHH
Q 024871 18 TGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPC----QIMA 93 (261)
Q Consensus 18 ~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPt----Q~L~ 93 (261)
.=...+|.++..+-+ .|-|++|..+.-++.+.+++.|.......+.+.+.-++|.+...--+-+.| +.|+
T Consensus 182 rlL~~~Gi~vn~v~p------~g~s~~di~~l~~A~~nivl~~~~g~~~A~~Lee~fGiP~i~~~PiG~~~T~~fL~~la 255 (519)
T PRK02910 182 RLLATLGIDVNVVAP------LGASPADLKRLPAAWFNVVLYREIGESAARYLEREFGQPYVKTVPIGVGATARFIREVA 255 (519)
T ss_pred HHHHHcCCeEEEEeC------CCCCHHHHHhcccCcEEEEeCHHHHHHHHHHHHHHhCCcccccccccHHHHHHHHHHHH
Confidence 345578888866532 478899999988888888777655555667777778899876311111222 3333
Q ss_pred HHHHHH----------H-H-------h------CCCCCcEEEEEcCCCchHHHHHHHHh-cCCcEEEEeCCCCCCCCHHH
Q 024871 94 DALTII----------E-H-------V------GRLEGTKVVYVGDGNNIVHSWLLMAS-VIPFHFVCACPKGFEPDKET 148 (261)
Q Consensus 94 Dl~Ti~----------e-~-------~------g~l~~~~i~~vGd~~~v~~S~~~~~~-~~g~~~~~~~P~~~~~~~~~ 148 (261)
+++-+. + . + ..+.|++++++|| .--+.++...+. -+|++++.++-......+.+
T Consensus 256 ~~~g~~~~~~e~~i~~~~~~~~~l~~~~~~~d~~~l~Gkrv~I~gd-~~~a~~l~~~L~~ElGm~vv~~gt~~~~~~~~~ 334 (519)
T PRK02910 256 ELLNLDGADLEAFILDGLSAPSRLPWFSRSVDSTYLTGKRVFVFGD-ATHAVAAARILSDELGFEVVGAGTYLREDARWV 334 (519)
T ss_pred HHhCCChhhhHHHHHHHHhhhhhhhHHHHhhhhHhhcCCEEEEEcC-cHHHHHHHHHHHHhcCCeEEEEecCCcchhHHH
Confidence 433220 0 0 1 2378999999998 335567777777 58999886654322333444
Q ss_pred HHHHHHhCCCeEEEEcCHHH---HhC--CCCEEEEecc
Q 024871 149 VEKARKAGISKIEITNDPKE---VVQ--GADVVYSDVW 181 (261)
Q Consensus 149 ~~~~~~~g~~~i~~~~d~~~---a~~--~aDviy~~~w 181 (261)
.+.+++.+ ..+.+++|..+ .++ +.|+|..+.+
T Consensus 335 ~~~~~~~~-~~~~i~~D~~el~~~i~~~~PdliiG~~~ 371 (519)
T PRK02910 335 RAAAKEYG-DEALITDDYLEVEDAIAEAAPELVLGTQM 371 (519)
T ss_pred HHHHHhcC-CCeEEecCHHHHHHHHHhcCCCEEEEcch
Confidence 44455555 45666777654 333 4788887643
No 78
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.13 E-value=0.31 Score=44.63 Aligned_cols=163 Identities=14% Similarity=0.053 Sum_probs=107.4
Q ss_pred HHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhh-------CCCcEEeCC-
Q 024871 15 SFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKF-------ATVPVINGL- 82 (261)
Q Consensus 15 SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~-------~~vPVINa~- 82 (261)
+=..++..+|.......-... ...|.+.+.++-|+.- +|.|++-.+-...+ .++-+. -++--+|.+
T Consensus 50 ~k~k~a~~~Gi~~~~~~l~~~--~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~ 127 (282)
T PRK14166 50 SKAKACEECGIKSLVYHLNEN--TTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGY 127 (282)
T ss_pred HHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHH
Confidence 345688999998765432211 1234466677766654 57888887643222 222111 112224521
Q ss_pred ---C--CCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 83 ---T--DYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 83 ---~--~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
+ ....||-+.+ ++.|.++++ +++|+++++||-.+-|..=++.++..-++++++|.-.
T Consensus 128 l~~g~~~~~~PcTp~a-vi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~---------------- 190 (282)
T PRK14166 128 LNLGLESGFLPCTPLG-VMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK---------------- 190 (282)
T ss_pred HhcCCCCCCcCCCHHH-HHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC----------------
Confidence 2 3568997665 567777777 6999999999987778888887777778999877421
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++..++||+|++-. |.. --++.+++ ++++++.-++-
T Consensus 191 ------T~nl~~~~~~ADIvIsAv----Gkp------------~~i~~~~v---k~GavVIDvGi 230 (282)
T PRK14166 191 ------TKDLSLYTRQADLIIVAA----GCV------------NLLRSDMV---KEGVIVVDVGI 230 (282)
T ss_pred ------CCCHHHHHhhCCEEEEcC----CCc------------CccCHHHc---CCCCEEEEecc
Confidence 457889999999999975 542 22777765 47888888875
No 79
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.12 E-value=0.51 Score=43.16 Aligned_cols=161 Identities=13% Similarity=0.110 Sum_probs=105.7
Q ss_pred HHHHHHHhcCCeEEEe--CCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhh-------CCCcEEeC
Q 024871 15 SFETGFSLLGGHAIYL--GPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKF-------ATVPVING 81 (261)
Q Consensus 15 SFe~A~~~LGg~~~~l--~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~-------~~vPVINa 81 (261)
+=..++..+|..+... +.+. ..|.+.+.++-++.- .|.|++-.+-...+ .++-+. -++--.|.
T Consensus 50 ~k~k~a~~~Gi~~~~~~l~~~~----~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~ 125 (282)
T PRK14169 50 NKQRRAEDIGVRSLMFRLPEAT----TQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPDKDVDGFSPVSV 125 (282)
T ss_pred HHHHHHHHcCCEEEEEECCCCC----CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhh
Confidence 3456889999987554 3332 244566666666553 47888877633222 222211 11223331
Q ss_pred -----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHh
Q 024871 82 -----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 82 -----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
+.....||-+++ ++.|.++++ .++|+++++||-.+-|..=+..++..-+.++++|..+
T Consensus 126 g~l~~~~~~~~PcTp~a-vi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~--------------- 189 (282)
T PRK14169 126 GRLWANEPTVVASTPYG-IMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK--------------- 189 (282)
T ss_pred HHHhcCCCCCCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCC---------------
Confidence 124478998877 456667776 6999999999987778888887777779999888532
Q ss_pred CCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 156 GISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 156 g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++.+++||+|++-. |.. .| ++.+++ ++++++.-++-
T Consensus 190 -------T~~l~~~~~~ADIvI~Av----G~p-----------~~-i~~~~v---k~GavVIDvGi 229 (282)
T PRK14169 190 -------TRNLKQLTKEADILVVAV----GVP-----------HF-IGADAV---KPGAVVIDVGI 229 (282)
T ss_pred -------CCCHHHHHhhCCEEEEcc----CCc-----------Cc-cCHHHc---CCCcEEEEeec
Confidence 357888999999999975 532 13 777765 46788877765
No 80
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.08 E-value=0.48 Score=43.40 Aligned_cols=160 Identities=17% Similarity=0.169 Sum_probs=105.6
Q ss_pred HHHHHHhcCCeEEEe--CCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhh-------CCCcEEeC-
Q 024871 16 FETGFSLLGGHAIYL--GPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKF-------ATVPVING- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l--~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~-------~~vPVINa- 81 (261)
=..++..+|..+... +.+. ..|.+.+.+.-|+.= +|.|++-.+-...+ .++-+. -++-=+|.
T Consensus 52 k~k~a~~~Gi~~~~~~l~~~~----~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~p~N~g 127 (284)
T PRK14170 52 KQKRTEEAGMKSVLIELPENV----TEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVG 127 (284)
T ss_pred HHHHHHHcCCEEEEEECCCCC----CHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcccCcccCChhhhh
Confidence 356889999987554 3332 245566666666553 57888887643222 222111 01222331
Q ss_pred ----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 82 ----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 82 ----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
+.....||-+.+ ++.|.+++| .++|+++++||-.+-|..=+..++..-+.++++|...
T Consensus 128 ~l~~~~~~~~PcTp~a-vi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~---------------- 190 (284)
T PRK14170 128 NLFIGKDSFVPCTPAG-IIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR---------------- 190 (284)
T ss_pred HHhCCCCCCCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC----------------
Confidence 124468998766 556667777 6999999999987778888877777778999988532
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++.+++||+|++-. |.. .| ++.+++ ++++++.-++-
T Consensus 191 ------T~~l~~~~~~ADIvI~Av----G~~-----------~~-i~~~~v---k~GavVIDvGi 230 (284)
T PRK14170 191 ------TKDLPQVAKEADILVVAT----GLA-----------KF-VKKDYI---KPGAIVIDVGM 230 (284)
T ss_pred ------CCCHHHHHhhCCEEEEec----CCc-----------Cc-cCHHHc---CCCCEEEEccC
Confidence 357888999999999975 532 13 777775 46888888775
No 81
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.91 E-value=1.1 Score=41.20 Aligned_cols=161 Identities=20% Similarity=0.166 Sum_probs=104.9
Q ss_pred HHHHHHhcCCeEEEeC-CCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchHH--HHhhhC-------CCcEEeC--
Q 024871 16 FETGFSLLGGHAIYLG-PDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDIL--DLAKFA-------TVPVING-- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~-~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~~--~~a~~~-------~vPVINa-- 81 (261)
=..++..+|....... +.++ ..|.+.+.++-|+.- .|.|++-.+-...+. ++.+.- +.--.|.
T Consensus 52 k~k~~~~~Gi~~~~~~l~~~~---~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~ 128 (286)
T PRK14184 52 KERACEDAGIVSEAFRLPADT---TQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPAKDVDGFHPENMGR 128 (286)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHHhccCcccCcccCCHhhHHH
Confidence 3568999999876543 2211 245667777777654 578888776432221 111110 1112231
Q ss_pred ---CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhc----CCcEEEEeCCCCCCCCHHHHHHHH
Q 024871 82 ---LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASV----IPFHFVCACPKGFEPDKETVEKAR 153 (261)
Q Consensus 82 ---~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~----~g~~~~~~~P~~~~~~~~~~~~~~ 153 (261)
+.....||-+++ ++.|.++++ .++|+++++||-.+-|..=+..++.. -+++++++...
T Consensus 129 l~~~~~~~~PcTp~a-v~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~------------- 194 (286)
T PRK14184 129 LALGLPGFRPCTPAG-VMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSR------------- 194 (286)
T ss_pred HhCCCCCCCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCC-------------
Confidence 124468997774 667777777 69999999999877787777777666 57888877421
Q ss_pred HhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 154 KAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 154 ~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++.+++||+|+.-. +. +.-|+.+++ ++++++.-..-
T Consensus 195 ---------t~~l~~~~~~ADIVI~Av----G~------------p~li~~~~v---k~GavVIDVGi 234 (286)
T PRK14184 195 ---------TPDLAEECREADFLFVAI----GR------------PRFVTADMV---KPGAVVVDVGI 234 (286)
T ss_pred ---------chhHHHHHHhCCEEEEec----CC------------CCcCCHHHc---CCCCEEEEeee
Confidence 357889999999999975 42 233777776 57788777664
No 82
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.82 E-value=0.62 Score=42.77 Aligned_cols=160 Identities=20% Similarity=0.169 Sum_probs=105.5
Q ss_pred HHHHHHhcCCeEEEe--CCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcc--hHHHHhhhC-------CCcEEeC-
Q 024871 16 FETGFSLLGGHAIYL--GPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQ--DILDLAKFA-------TVPVING- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l--~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~--~~~~~a~~~-------~vPVINa- 81 (261)
=..++..+|..+... +... ..|.+.+.+.-|+.- .|.|++-.+-.. .-.++.+.- ++-=+|.
T Consensus 50 k~k~~~~~Gi~~~~~~l~~~~----~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g 125 (287)
T PRK14173 50 KDRQAKALGLRSQVEVLPEST----SQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPLKDVDGFHPLNVG 125 (287)
T ss_pred HHHHHHHcCCEEEEEECCCCC----CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhhH
Confidence 456889999987554 3332 244566677766654 578888776432 222221110 1212331
Q ss_pred ----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 82 ----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 82 ----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
+.....||-+++ ++.|.++++ +++|+++++||-.+-|..=+..++..-+.++++|...
T Consensus 126 ~l~~~~~~~~PcTp~a-vi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~---------------- 188 (287)
T PRK14173 126 RLWMGGEALEPCTPAG-VVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSK---------------- 188 (287)
T ss_pred HHhcCCCCCCCCCHHH-HHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCC----------------
Confidence 124468996665 567777777 6999999999987778888877777778999888531
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++.+++||+|++-. |.. --++.+++ ++++++.-++-
T Consensus 189 ------T~~l~~~~~~ADIvIsAv----Gkp------------~~i~~~~v---k~GavVIDVGi 228 (287)
T PRK14173 189 ------TQDLPAVTRRADVLVVAV----GRP------------HLITPEMV---RPGAVVVDVGI 228 (287)
T ss_pred ------CCCHHHHHhhCCEEEEec----CCc------------CccCHHHc---CCCCEEEEccC
Confidence 457889999999999975 532 22566665 47788877765
No 83
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.74 E-value=0.71 Score=42.24 Aligned_cols=161 Identities=14% Similarity=0.100 Sum_probs=105.9
Q ss_pred HHHHHHhcCCeEEEeC-CCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhhC-------CCcEEeC--
Q 024871 16 FETGFSLLGGHAIYLG-PDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKFA-------TVPVING-- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~-~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~~-------~vPVINa-- 81 (261)
=..++.++|..+.... +.++ ..|.+.++++-++.= .|.|++-.+-...+ .++-+.- ++--.|.
T Consensus 51 k~k~a~~~Gi~~~~~~l~~~~---t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~ 127 (282)
T PRK14182 51 KRKDCEEVGITSVEHHLPATT---TQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPAKDADGFHPFNVGA 127 (282)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcCCCCHhHHHH
Confidence 3678999999876543 2222 234566677666654 57888887743222 2221110 1112341
Q ss_pred --CCCC--CChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 82 --LTDY--NHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 82 --~~~~--~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
.++. .-||-+++ ++.|.++++ +++|+++++||-.+-|..=+..++..-+.++++|...
T Consensus 128 l~~g~~~~~~PcTp~a-vi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~---------------- 190 (282)
T PRK14182 128 LSIGIAGVPRPCTPAG-VMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSR---------------- 190 (282)
T ss_pred HhCCCCCCCCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC----------------
Confidence 1222 46886665 566777777 6999999999987878888888887778999887532
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++.+++||+|++-. |. +.-++.+++ ++++++.-++-
T Consensus 191 ------T~nl~~~~~~ADIvI~Av----Gk------------~~~i~~~~i---k~gaiVIDvGi 230 (282)
T PRK14182 191 ------TADLAGEVGRADILVAAI----GK------------AELVKGAWV---KEGAVVIDVGM 230 (282)
T ss_pred ------CCCHHHHHhhCCEEEEec----CC------------cCccCHHHc---CCCCEEEEeec
Confidence 457888999999999975 43 234777775 46788887765
No 84
>PRK07579 hypothetical protein; Provisional
Probab=94.70 E-value=0.12 Score=46.40 Aligned_cols=94 Identities=19% Similarity=0.218 Sum_probs=60.4
Q ss_pred cEEEEEcCCCchHHHHHHH--HhcCCcEEEEeCCCCCCC--CHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccC
Q 024871 108 TKVVYVGDGNNIVHSWLLM--ASVIPFHFVCACPKGFEP--DKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWAS 183 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~--~~~~g~~~~~~~P~~~~~--~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~ 183 (261)
+||.++|| +.+.++.+.. ...-.++|.++|+-.-+. +.+.. +.....+.+.++..+.++++|++++-.|.
T Consensus 2 k~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~DliVvvayg- 75 (245)
T PRK07579 2 KTILVLTD-NVHAHALAVDLIARKNDMDVDYFCSFKSQTSFAKEIY----QSPIKQLDVAERVAEIVERYDLVLSFHCK- 75 (245)
T ss_pred ceEEEEcc-cHHHHHHHHHHHhhccCcceEEEEeccCCcccccccc----cccccCcchhhhHHhhhcCCCEEEEchhh-
Confidence 68999998 6677776543 334456666666532221 11110 11123456778889999999999997642
Q ss_pred cchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCC
Q 024871 184 MGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERG 225 (261)
Q Consensus 184 ~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg 225 (261)
..+.+++++.. .++=+|| ||.+||
T Consensus 76 ----------------~ilp~~iL~~~--~~iNiHpSLLP~yRG 101 (245)
T PRK07579 76 ----------------QRFPAKLVNGV--RCINIHPGFNPYNRG 101 (245)
T ss_pred ----------------ccCCHHHHhhC--CEEEEcCCcCCCCCC
Confidence 33667777654 4899998 799886
No 85
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.69 E-value=0.79 Score=42.27 Aligned_cols=161 Identities=16% Similarity=0.130 Sum_probs=104.3
Q ss_pred HHHHHHHhcCCeEEEe--CCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhhC-------CCcEEeC
Q 024871 15 SFETGFSLLGGHAIYL--GPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKFA-------TVPVING 81 (261)
Q Consensus 15 SFe~A~~~LGg~~~~l--~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~~-------~vPVINa 81 (261)
+=..++..+|...... +... ..|.+.+.+.-|+.= .|.|++-.+-...+ .++-+.- ++-=.|.
T Consensus 52 ~k~k~a~~~Gi~~~~~~l~~~~----~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~ 127 (297)
T PRK14186 52 NKEKACARVGIASFGKHLPADT----SQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPDKDADGLHPLNL 127 (297)
T ss_pred HHHHHHHHcCCEEEEEECCCCC----CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhH
Confidence 3456889999987644 3332 244566666666553 57888877643222 2221110 1111331
Q ss_pred -----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHh
Q 024871 82 -----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 82 -----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
+.....||-+++ ++.|.+++| .++|+++++||-.+-|..=+..++..-|+++++|...
T Consensus 128 g~l~~~~~~~~PcTp~a-ii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~--------------- 191 (297)
T PRK14186 128 GRLVKGEPGLRSCTPAG-VMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR--------------- 191 (297)
T ss_pred HHHhCCCCCCCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------
Confidence 123478997665 667777777 6999999999987778888887777779999888532
Q ss_pred CCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 156 GISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 156 g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++.+++||+|++-. |. +.-++.+++ ++++++.-++-
T Consensus 192 -------T~~l~~~~~~ADIvIsAv----Gk------------p~~i~~~~i---k~gavVIDvGi 231 (297)
T PRK14186 192 -------TQDLASITREADILVAAA----GR------------PNLIGAEMV---KPGAVVVDVGI 231 (297)
T ss_pred -------CCCHHHHHhhCCEEEEcc----CC------------cCccCHHHc---CCCCEEEEecc
Confidence 347888899999999975 53 223666665 46777777664
No 86
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.67 E-value=0.85 Score=41.67 Aligned_cols=160 Identities=18% Similarity=0.146 Sum_probs=105.7
Q ss_pred HHHHHHhcCCeEEEe--CCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcch--HHHHhhhC-------CCcEEeC-
Q 024871 16 FETGFSLLGGHAIYL--GPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQD--ILDLAKFA-------TVPVING- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l--~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~--~~~~a~~~-------~vPVINa- 81 (261)
=..++.++|.++... +.+. ..|.+.++++-|+.- .|.|++-.+-... -.++.+.- ++--.|.
T Consensus 53 k~k~a~~~Gi~~~~~~l~~~~----~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g 128 (278)
T PRK14172 53 QEKVANSLGIDFKKIKLDESI----SEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDANKDIDCLTFISVG 128 (278)
T ss_pred HHHHHHHcCCEEEEEECCCCC----CHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccccCccCHhhHH
Confidence 367899999987654 3332 235577777777654 5788887763322 22222110 1112241
Q ss_pred ----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 82 ----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 82 ----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
+.....||-+++ ++.|.++++ .++|+++++||-.+-|..=+..++..-|+++++|.-+
T Consensus 129 ~l~~g~~~~~PcTp~a-v~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~---------------- 191 (278)
T PRK14172 129 KFYKGEKCFLPCTPNS-VITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK---------------- 191 (278)
T ss_pred HHhCCCCCCcCCCHHH-HHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC----------------
Confidence 123478996655 566777777 6999999999987778888887777778999888521
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+.+..++||+|++-. |.. .-++.+++ ++++++.-.+-
T Consensus 192 ------T~~l~~~~~~ADIvIsAv----Gkp------------~~i~~~~i---k~gavVIDvGi 231 (278)
T PRK14172 192 ------TKNLKEVCKKADILVVAI----GRP------------KFIDEEYV---KEGAIVIDVGT 231 (278)
T ss_pred ------CCCHHHHHhhCCEEEEcC----CCc------------CccCHHHc---CCCcEEEEeec
Confidence 457888999999999975 531 22777775 47788877764
No 87
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=94.66 E-value=0.31 Score=44.91 Aligned_cols=101 Identities=18% Similarity=0.219 Sum_probs=58.4
Q ss_pred cEEEEEcCCCchHHHHHHHHh-cCCcEEEEeCCCC-----CC-CCHHHHHHHHHhCCCeEEEEcCH-----HHHh--CCC
Q 024871 108 TKVVYVGDGNNIVHSWLLMAS-VIPFHFVCACPKG-----FE-PDKETVEKARKAGISKIEITNDP-----KEVV--QGA 173 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~-~~g~~~~~~~P~~-----~~-~~~~~~~~~~~~g~~~i~~~~d~-----~~a~--~~a 173 (261)
+||+|+|...-....+-.+.. .+..-.+++.|+. .. ....+.+.|+++|+..++ ..++ .+.+ .+.
T Consensus 1 mkIvf~G~~~~a~~~L~~L~~~~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~-~~~~~~~~~~~~l~~~~~ 79 (309)
T PRK00005 1 MRIVFMGTPEFAVPSLKALLESGHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQ-PEKLRDPEFLAELAALNA 79 (309)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEEC-cCCCCCHHHHHHHHhcCc
Confidence 489999975332333333322 2233333444542 11 133456778888864322 2221 1222 277
Q ss_pred CEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCCc
Q 024871 174 DVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERGV 226 (261)
Q Consensus 174 Dviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg~ 226 (261)
|++++-.| .+.|.+++++..+..++-+|| ||.+||.
T Consensus 80 Dliv~~~~-----------------~~iip~~il~~~~~g~iNiHpslLP~yRG~ 117 (309)
T PRK00005 80 DVIVVVAY-----------------GQILPKAVLDIPRLGCINLHASLLPRWRGA 117 (309)
T ss_pred CEEEEehh-----------------hcccCHHHHhcCCCCEEEEeCcccccCCCc
Confidence 88888654 255888899888878999999 7888853
No 88
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=94.65 E-value=0.8 Score=45.31 Aligned_cols=157 Identities=17% Similarity=0.120 Sum_probs=91.7
Q ss_pred HHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChhH----HHHH
Q 024871 19 GFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQ----IMAD 94 (261)
Q Consensus 19 A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQ----~L~D 94 (261)
=...+|.++..+= ..|-|++|..+.-++.+++++-|.......+.+.+.-++|.+...-=+-+.|. .|++
T Consensus 188 LL~~~Gi~vn~v~------~~g~sl~di~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiGi~~T~~fLr~la~ 261 (513)
T CHL00076 188 LLQDLGIEINQII------PEGGSVEDLKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMGIVDTAECIRQIQK 261 (513)
T ss_pred HHHHCCCeEEEEE------CCCCCHHHHHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCCHHHHHHHHHHHHH
Confidence 3456777776332 23668899998888888888877666667778888889998873111222222 2222
Q ss_pred HHH---------------HHHHh----------------CCCCCcEEEEEcCCCchHHHHHHHH-hcCCcEEEEeCCCCC
Q 024871 95 ALT---------------IIEHV----------------GRLEGTKVVYVGDGNNIVHSWLLMA-SVIPFHFVCACPKGF 142 (261)
Q Consensus 95 l~T---------------i~e~~----------------g~l~~~~i~~vGd~~~v~~S~~~~~-~~~g~~~~~~~P~~~ 142 (261)
++- +.+.. ..|.|+|++++||.. -+.++...+ .-+|+.++.++-..-
T Consensus 262 ~lg~~~~~i~~~e~~~e~~i~~~~~~~~~~~~~~r~~d~~~l~Gkrv~I~gd~~-~a~~l~~~L~~ELGm~vv~~g~~~~ 340 (513)
T CHL00076 262 ILNKLASDILEKKVDYEKYIDQQTRFVSQAAWFSRSIDCQNLTGKKAVVFGDAT-HAASMTKILAREMGIRVSCAGTYCK 340 (513)
T ss_pred HhCCCcchhhhchhhHHHHHHHhhhhhhhhhHhhhhhhccccCCCEEEEEcCch-HHHHHHHHHHHhCCCEEEEecCccc
Confidence 211 11111 257899999999943 444555444 468999876542111
Q ss_pred CCCHHHHHHHHHhCCCeEEEEcCHH---HHhCC--CCEEEEecccC
Q 024871 143 EPDKETVEKARKAGISKIEITNDPK---EVVQG--ADVVYSDVWAS 183 (261)
Q Consensus 143 ~~~~~~~~~~~~~g~~~i~~~~d~~---~a~~~--aDviy~~~w~~ 183 (261)
...+.+.+.++..+ ..+.+++|.. +.+++ .|+|..+.|.+
T Consensus 341 ~~~~~~~~~~~~~~-~~~~i~~D~~ei~~~I~~~~pdliiGs~~er 385 (513)
T CHL00076 341 HDAEWFKEQVQGFC-DEILITDDHTEVGDMIARVEPSAIFGTQMER 385 (513)
T ss_pred chhHHHHHHHHHhc-cCcEEecCHHHHHHHHHhcCCCEEEECchhh
Confidence 11222233444444 3445566654 34444 79999887654
No 89
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.56 E-value=0.65 Score=42.61 Aligned_cols=161 Identities=17% Similarity=0.115 Sum_probs=105.3
Q ss_pred HHHHHHHhcCCeEEEe--CCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhh-------CCCcEEeC
Q 024871 15 SFETGFSLLGGHAIYL--GPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKF-------ATVPVING 81 (261)
Q Consensus 15 SFe~A~~~LGg~~~~l--~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~-------~~vPVINa 81 (261)
+=..++.++|...... +.+. ..|.+.+.++-|+.- .|.|++-.+-...+ .++.+. -++-=+|.
T Consensus 58 ~k~k~~~~~Gi~~~~~~l~~~~----~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~ 133 (287)
T PRK14176 58 LKHKACERVGIRAEDQFLPADT----TQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPAKDADGFHPYNM 133 (287)
T ss_pred HHHHHHHHcCCEEEEEECCCCC----CHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCccccccccChhhh
Confidence 4467899999987554 3332 255677777777664 57888887643222 112111 01222331
Q ss_pred -----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHh
Q 024871 82 -----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 82 -----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
+.....||-+.+ ++.+.++++ .++|++++++|-.+-|..-++.++..-|+++++|.-
T Consensus 134 g~l~~g~~~~~PcTp~a-v~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs---------------- 196 (287)
T PRK14176 134 GKLMIGDEGLVPCTPHG-VIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHV---------------- 196 (287)
T ss_pred hhHhcCCCCCCCCcHHH-HHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEec----------------
Confidence 123468996665 556666666 699999999998777888888888888999988852
Q ss_pred CCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 156 GISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 156 g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
.+.|+++.+++||+|+.-. |.. .-++.+++ ++++++.-++-
T Consensus 197 ------~T~~l~~~~~~ADIvv~Av----G~p------------~~i~~~~v---k~gavVIDvGi 237 (287)
T PRK14176 197 ------FTDDLKKYTLDADILVVAT----GVK------------HLIKADMV---KEGAVIFDVGI 237 (287)
T ss_pred ------cCCCHHHHHhhCCEEEEcc----CCc------------cccCHHHc---CCCcEEEEecc
Confidence 1457888999999999854 431 22566654 46777777665
No 90
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.54 E-value=0.22 Score=42.03 Aligned_cols=75 Identities=24% Similarity=0.154 Sum_probs=57.0
Q ss_pred CCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEE
Q 024871 84 DYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEIT 163 (261)
Q Consensus 84 ~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~ 163 (261)
..++||=+.+=+--+++.+++++|++++++|-+.-+....+..+...|.+++++... +
T Consensus 21 ~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~----------------------~ 78 (168)
T cd01080 21 PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK----------------------T 78 (168)
T ss_pred CCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC----------------------c
Confidence 578999887777666677778999999999974334555777777778887766421 2
Q ss_pred cCHHHHhCCCCEEEEec
Q 024871 164 NDPKEVVQGADVVYSDV 180 (261)
Q Consensus 164 ~d~~~a~~~aDviy~~~ 180 (261)
+++.+.+++||+|++-.
T Consensus 79 ~~l~~~l~~aDiVIsat 95 (168)
T cd01080 79 KNLKEHTKQADIVIVAV 95 (168)
T ss_pred hhHHHHHhhCCEEEEcC
Confidence 46788999999999975
No 91
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.53 E-value=0.72 Score=42.18 Aligned_cols=162 Identities=17% Similarity=0.141 Sum_probs=104.8
Q ss_pred HHHHHHHhcCCeEEEeC-CCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhhC-------CCcEEeC-
Q 024871 15 SFETGFSLLGGHAIYLG-PDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKFA-------TVPVING- 81 (261)
Q Consensus 15 SFe~A~~~LGg~~~~l~-~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~~-------~vPVINa- 81 (261)
+=..++.++|....... +.++ ..|.+.+.+.-|+.- .|.|++-.+-...+ .++.+.- ++--+|.
T Consensus 51 ~k~k~a~~~Gi~~~~~~l~~~~---~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g 127 (281)
T PRK14183 51 MKAKACDRVGIYSITHEMPSTI---SQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPKKDVDGFHPYNVG 127 (281)
T ss_pred HHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCchhcccccChhhhh
Confidence 34568899999875443 2222 244577777777654 57888877643222 2222111 1112442
Q ss_pred ----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 82 ----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 82 ----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
+.....||-+.+ ++.|.++++ +++|+++++||-.+-|..=++.++..-|.++++|.-
T Consensus 128 ~l~~g~~~~~PcTp~a-vi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs----------------- 189 (281)
T PRK14183 128 RLVTGLDGFVPCTPLG-VMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHI----------------- 189 (281)
T ss_pred HHhcCCCCCCCCcHHH-HHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC-----------------
Confidence 124578997665 567777777 699999999998777777777777667899887632
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
.+.|+++.+++||+|++-. |.. --++.+++ ++++++.-++-
T Consensus 190 -----~T~~l~~~~~~ADIvV~Av----Gkp------------~~i~~~~v---k~gavvIDvGi 230 (281)
T PRK14183 190 -----FTKDLKAHTKKADIVIVGV----GKP------------NLITEDMV---KEGAIVIDIGI 230 (281)
T ss_pred -----CCcCHHHHHhhCCEEEEec----Ccc------------cccCHHHc---CCCcEEEEeec
Confidence 1457888999999999975 542 12666664 46777777763
No 92
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.51 E-value=0.71 Score=42.32 Aligned_cols=159 Identities=16% Similarity=0.105 Sum_probs=101.8
Q ss_pred HHHHHHhcCCeEEEe--CCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhh-------CCCcEEeC-
Q 024871 16 FETGFSLLGGHAIYL--GPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKF-------ATVPVING- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l--~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~-------~~vPVINa- 81 (261)
=..++..+|.++..+ +.+. ..|.+.+.+.-++.- .|.|++--+-...+ .++.+. -++--.|.
T Consensus 54 k~k~a~~~Gi~~~~~~l~~~~----s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g 129 (285)
T PRK10792 54 KRKACEEVGFVSRSYDLPETT----SEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPDKDVDGFHPYNVG 129 (285)
T ss_pred HHHHHHHcCCEEEEEECCCCC----CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccCccChhhHh
Confidence 356888999987554 3222 234555555555554 57888876633221 222111 01222331
Q ss_pred ----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 82 ----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 82 ----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
+.....||-+++ ++.+.|+++ +++|++++++|-.+-|..-+..++..-|.++++|.-.
T Consensus 130 ~l~~~~~~~~PcTp~a-v~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~---------------- 192 (285)
T PRK10792 130 RLAQRIPLLRPCTPRG-IMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF---------------- 192 (285)
T ss_pred HHhCCCCCCCCCCHHH-HHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC----------------
Confidence 124468996665 556666666 6999999999987778998988888889999888421
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCL 220 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~l 220 (261)
+.|+++.+++||+|+... |... .++.+.+ ++++++.-++
T Consensus 193 ------T~~l~~~~~~ADIvi~av----G~p~------------~v~~~~v---k~gavVIDvG 231 (285)
T PRK10792 193 ------TKNLRHHVRNADLLVVAV----GKPG------------FIPGEWI---KPGAIVIDVG 231 (285)
T ss_pred ------CCCHHHHHhhCCEEEEcC----CCcc------------cccHHHc---CCCcEEEEcc
Confidence 457899999999999985 5321 2555443 5677777766
No 93
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=94.50 E-value=0.094 Score=44.18 Aligned_cols=67 Identities=27% Similarity=0.336 Sum_probs=46.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
|++++|+++|-+ +-.|+.+.-+.--|.++++.--++ ....+++++.|. + ..+++||+++||+|+...
T Consensus 2 l~~k~IAViGyG-sQG~a~AlNLrDSG~~V~Vglr~~----s~s~~~A~~~Gf---~-v~~~~eAv~~aDvV~~L~ 68 (165)
T PF07991_consen 2 LKGKTIAVIGYG-SQGHAHALNLRDSGVNVIVGLREG----SASWEKAKADGF---E-VMSVAEAVKKADVVMLLL 68 (165)
T ss_dssp HCTSEEEEES-S-HHHHHHHHHHHHCC-EEEEEE-TT----CHHHHHHHHTT----E-CCEHHHHHHC-SEEEE-S
T ss_pred cCCCEEEEECCC-hHHHHHHHHHHhCCCCEEEEecCC----CcCHHHHHHCCC---e-eccHHHHHhhCCEEEEeC
Confidence 579999999975 447777777777799988765433 235577888883 3 347899999999999974
No 94
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.46 E-value=0.74 Score=42.20 Aligned_cols=161 Identities=17% Similarity=0.093 Sum_probs=104.8
Q ss_pred HHHHHHhcCCeEEEeCC-CCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhhC-------CCcEEeC--
Q 024871 16 FETGFSLLGGHAIYLGP-DDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKFA-------TVPVING-- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~~-~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~~-------~vPVINa-- 81 (261)
=..++..+|..+....- .++ ..|.+.++++-++.= +|.|++-.+-...+ ..+.+.- ++-=.|.
T Consensus 53 k~k~a~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~ 129 (284)
T PRK14190 53 KKKAAEKVGIYSELYEFPADI---TEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPEKDVDGFHPINVGR 129 (284)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccCHhhHHH
Confidence 36789999998765432 212 244566777766554 56777776633222 1121110 1111221
Q ss_pred ---CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC
Q 024871 82 ---LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI 157 (261)
Q Consensus 82 ---~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~ 157 (261)
+.....||-+++ ++.|.++++ +++|+++++||-.+-|..=+..++..-+.++++|..
T Consensus 130 l~~~~~~~~PcTp~a-v~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs------------------ 190 (284)
T PRK14190 130 MMLGQDTFLPCTPHG-ILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHS------------------ 190 (284)
T ss_pred HhcCCCCCCCCCHHH-HHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeC------------------
Confidence 124478997666 556677777 699999999998777888888877777899988742
Q ss_pred CeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 158 SKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 158 ~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
-+.|+++.+++||+|++-. |.. .-++.+.+ ++++++.-++-
T Consensus 191 ----~t~~l~~~~~~ADIvI~Av----G~p------------~~i~~~~i---k~gavVIDvGi 231 (284)
T PRK14190 191 ----KTKNLAELTKQADILIVAV----GKP------------KLITADMV---KEGAVVIDVGV 231 (284)
T ss_pred ----CchhHHHHHHhCCEEEEec----CCC------------CcCCHHHc---CCCCEEEEeec
Confidence 1457889999999999975 431 23777776 57788887764
No 95
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.45 E-value=0.66 Score=42.48 Aligned_cols=171 Identities=17% Similarity=0.142 Sum_probs=108.0
Q ss_pred CCChhhHH-HHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhhC-------
Q 024871 7 KPSMRTRV-SFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKFA------- 74 (261)
Q Consensus 7 ~~StRTR~-SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~~------- 74 (261)
.|+.++-. +=..++.++|..+....-... ...|.+.+.+.-|+.- .|.|++-.+-...+ .++.+.-
T Consensus 42 d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~KDVD 119 (282)
T PRK14180 42 DPASKTYVASKEKACAQVGIDSQVITLPEH--TTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVD 119 (282)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCcccccc
Confidence 33444333 345689999998755432111 1245566666666554 57888876633222 1221110
Q ss_pred CCcEEeC-----C-CCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHH
Q 024871 75 TVPVING-----L-TDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKE 147 (261)
Q Consensus 75 ~vPVINa-----~-~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~ 147 (261)
++--.|. + .....||-+.+ ++.|.|+++ .++|+++++||-.+-|..=++.++..-++++++|.-
T Consensus 120 Gl~~~n~g~l~~g~~~~~~PcTp~a-ii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs-------- 190 (282)
T PRK14180 120 GFHPTNVGRLQLRDKKCLESCTPKG-IMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHR-------- 190 (282)
T ss_pred ccChhhHHHHhcCCCCCcCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcC--------
Confidence 1212231 1 24568996655 566777777 699999999998777888887777677899988742
Q ss_pred HHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 148 TVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 148 ~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
.+.|+.+.+++||+|++-. |.. .| ++.+++ ++++++.-++-
T Consensus 191 --------------~T~dl~~~~k~ADIvIsAv----Gkp-----------~~-i~~~~v---k~gavVIDvGi 231 (282)
T PRK14180 191 --------------FTTDLKSHTTKADILIVAV----GKP-----------NF-ITADMV---KEGAVVIDVGI 231 (282)
T ss_pred --------------CCCCHHHHhhhcCEEEEcc----CCc-----------Cc-CCHHHc---CCCcEEEEecc
Confidence 1457888899999999975 532 13 777665 47888888775
No 96
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=94.44 E-value=0.38 Score=44.43 Aligned_cols=100 Identities=19% Similarity=0.200 Sum_probs=59.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEE--EEeCCCC-----CC-CCHHHHHHHHHhCCCeEEEEcCHH--HH---h--CC
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHF--VCACPKG-----FE-PDKETVEKARKAGISKIEITNDPK--EV---V--QG 172 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~--~~~~P~~-----~~-~~~~~~~~~~~~g~~~i~~~~d~~--~a---~--~~ 172 (261)
+||+|+|...--..++-.+.. -|.++ ++..|+. .. ....+.+.|+++|+.-+. ..+.. +. + .+
T Consensus 1 mkIvf~Gs~~~a~~~L~~L~~-~~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~-~~~~~~~~~~~~l~~~~ 78 (313)
T TIGR00460 1 LRIVFFGTPTFSLPVLEELRE-DNFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQ-PEKQRQLEELPLVRELK 78 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEe-cCCCCcHHHHHHHHhhC
Confidence 489999975444444444333 23433 3434532 11 133466778888864332 22221 22 2 27
Q ss_pred CCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCCc
Q 024871 173 ADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERGV 226 (261)
Q Consensus 173 aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg~ 226 (261)
.|++++-.| .+.|.+++++..+-.++-+|| ||.+||.
T Consensus 79 ~Dliv~~~~-----------------~~iip~~il~~~~~g~iNiHpSlLP~yRG~ 117 (313)
T TIGR00460 79 PDVIVVVSF-----------------GKILPKEFLDLFPYGCINVHPSLLPRWRGG 117 (313)
T ss_pred CCEEEEccc-----------------hhhCCHHHHhhccCCEEEecCccccCCCCc
Confidence 788887654 245888899888888999999 8988853
No 97
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.42 E-value=0.87 Score=41.98 Aligned_cols=161 Identities=17% Similarity=0.086 Sum_probs=103.7
Q ss_pred HHHHHHhcCCeEEEeC-CCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcc--hHHHHhhhC-------CCcEEeC--
Q 024871 16 FETGFSLLGGHAIYLG-PDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQ--DILDLAKFA-------TVPVING-- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~-~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~--~~~~~a~~~-------~vPVINa-- 81 (261)
=..++.++|....... +.++ ..|.+.+.+.-++.- .|.|++-.+-.. .-.++-+.- ++-=+|.
T Consensus 54 k~k~~~~~Gi~~~~~~l~~~~---t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~ 130 (297)
T PRK14168 54 KIKTAHRLGFHEIQDNQSVDI---TEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPDKDVDGFHPVNVGR 130 (297)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhHHH
Confidence 3578999999876543 2222 345667777777665 578888876332 222221110 1112231
Q ss_pred --CC---CCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcC----CcEEEEeCCCCCCCCHHHHHH
Q 024871 82 --LT---DYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVI----PFHFVCACPKGFEPDKETVEK 151 (261)
Q Consensus 82 --~~---~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~----g~~~~~~~P~~~~~~~~~~~~ 151 (261)
.+ ....||-+++ ++.|.+++| .++|+++++||-.+-|..=++.++..- +.++++|.-+
T Consensus 131 l~~~~~~~~~~PcTp~a-vi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~----------- 198 (297)
T PRK14168 131 LMIGGDEVKFLPCTPAG-IQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR----------- 198 (297)
T ss_pred HhcCCCCCCCcCCCHHH-HHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC-----------
Confidence 12 3578997666 556667776 699999999998777777776666554 6888877421
Q ss_pred HHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 152 ARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 152 ~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++.+++||+|++-. |.. --++.+++ ++++++.-++-
T Consensus 199 -----------T~~l~~~~~~ADIvVsAv----Gkp------------~~i~~~~i---k~gavVIDvGi 238 (297)
T PRK14168 199 -----------SKNLARHCQRADILIVAA----GVP------------NLVKPEWI---KPGATVIDVGV 238 (297)
T ss_pred -----------CcCHHHHHhhCCEEEEec----CCc------------CccCHHHc---CCCCEEEecCC
Confidence 357888999999999975 532 22677765 47888888774
No 98
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=94.38 E-value=0.39 Score=41.64 Aligned_cols=116 Identities=15% Similarity=0.180 Sum_probs=75.1
Q ss_pred CCChhHHHHHHHHHHHHhC----------CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH
Q 024871 85 YNHPCQIMADALTIIEHVG----------RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK 154 (261)
Q Consensus 85 ~~HPtQ~L~Dl~Ti~e~~g----------~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~ 154 (261)
..-||-+++ ++.|.|+++ +++|+++++||..+-|..=++.++..-|+++++|.-++.+.-.... .. +
T Consensus 31 ~~~PCTp~a-vi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~-~~-~ 107 (197)
T cd01079 31 SILPCTPLA-IVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGE-SI-R 107 (197)
T ss_pred CccCCCHHH-HHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCccccccccc-cc-c
Confidence 457887776 445555554 5999999999998888888888887789999988433432200000 00 0
Q ss_pred hCCCe-EEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 155 AGISK-IEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 155 ~g~~~-i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+-... -..+.++.+.+++||+|++-. |.. .|.|+.+++ ++++++.-.+-
T Consensus 108 hs~t~~~~~~~~l~~~~~~ADIVIsAv----G~~-----------~~~i~~d~i---k~GavVIDVGi 157 (197)
T cd01079 108 HEKHHVTDEEAMTLDCLSQSDVVITGV----PSP-----------NYKVPTELL---KDGAICINFAS 157 (197)
T ss_pred cccccccchhhHHHHHhhhCCEEEEcc----CCC-----------CCccCHHHc---CCCcEEEEcCC
Confidence 00000 001122778999999999975 542 356888876 47889988875
No 99
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.26 E-value=0.26 Score=44.05 Aligned_cols=72 Identities=22% Similarity=0.270 Sum_probs=53.3
Q ss_pred CCCcEEEEEcCC--CchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHHhC----CCeEEEEcCHHHHhCCCCEEE
Q 024871 105 LEGTKVVYVGDG--NNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARKAG----ISKIEITNDPKEVVQGADVVY 177 (261)
Q Consensus 105 l~~~~i~~vGd~--~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~g----~~~i~~~~d~~~a~~~aDviy 177 (261)
+++.+|+.|..- .|+. |.+.++..||+ +++++.|... ++++-.. ...| ..+-.++++++||+.|+|++|
T Consensus 2 ~~~i~iVLVep~~~gNIG-~vARaMKNfGl~eL~LV~Pr~~-~~eeA~a--~A~gA~dile~A~i~~tL~eAl~d~~~v~ 77 (242)
T COG0565 2 LENIRIVLVEPSHPGNIG-SVARAMKNFGLSELRLVNPRAG-LDEEARA--LAAGARDILENAKIVDTLEEALADCDLVV 77 (242)
T ss_pred CCccEEEEEcCCCCccHH-HHHHHHHhCCcceEEEECCCCC-CCHHHHH--HhccchhhhccCeeecCHHHHhcCCCEEE
Confidence 568899999973 5654 56777888997 8999999776 5555432 2233 134467999999999999999
Q ss_pred Eec
Q 024871 178 SDV 180 (261)
Q Consensus 178 ~~~ 180 (261)
.++
T Consensus 78 aTt 80 (242)
T COG0565 78 ATT 80 (242)
T ss_pred Eec
Confidence 986
No 100
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.24 E-value=0.3 Score=37.47 Aligned_cols=65 Identities=20% Similarity=0.314 Sum_probs=46.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+++|++|++||. ++++...+..+...|.++++++|.. +. ++ +.-.+. ....++-++++|+|+..+
T Consensus 4 ~l~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~~-----~~---~~--~~i~~~-~~~~~~~l~~~~lV~~at 68 (103)
T PF13241_consen 4 DLKGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPEI-----EF---SE--GLIQLI-RREFEEDLDGADLVFAAT 68 (103)
T ss_dssp --TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESSE-----HH---HH--TSCEEE-ESS-GGGCTTESEEEE-S
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCch-----hh---hh--hHHHHH-hhhHHHHHhhheEEEecC
Confidence 588999999997 8899999999999999999999975 11 12 211222 334566799999999875
No 101
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=94.18 E-value=0.24 Score=46.24 Aligned_cols=68 Identities=24% Similarity=0.231 Sum_probs=50.4
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 103 GRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 103 g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
..|+|++|++||= +++.+..+..+..+|+++++.-++. . ..+.+...|. +. .++++++++||+|.+..
T Consensus 12 ~~LkgKtVGIIG~-GsIG~amA~nL~d~G~~ViV~~r~~--~---s~~~A~~~G~---~v-~sl~Eaak~ADVV~llL 79 (335)
T PRK13403 12 ELLQGKTVAVIGY-GSQGHAQAQNLRDSGVEVVVGVRPG--K---SFEVAKADGF---EV-MSVSEAVRTAQVVQMLL 79 (335)
T ss_pred hhhCcCEEEEEeE-cHHHHHHHHHHHHCcCEEEEEECcc--h---hhHHHHHcCC---EE-CCHHHHHhcCCEEEEeC
Confidence 4589999999994 7888888888889999987764331 1 1223445553 32 38999999999999974
No 102
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.09 E-value=0.28 Score=42.49 Aligned_cols=70 Identities=20% Similarity=0.249 Sum_probs=49.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcC--HHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITND--PKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d--~~~a~~~aDviy~~~ 180 (261)
+++|++|.+||. +.++.+.+..+...|.++++++|. +.+++.+.+.+ + .+.+... .++.+.++|+|+.-+
T Consensus 7 ~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~---~~~~l~~l~~~-~--~i~~~~~~~~~~~l~~adlViaaT 78 (202)
T PRK06718 7 DLSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPE---LTENLVKLVEE-G--KIRWKQKEFEPSDIVDAFLVIAAT 78 (202)
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCC---CCHHHHHHHhC-C--CEEEEecCCChhhcCCceEEEEcC
Confidence 589999999996 889999888888889999999983 34444444333 3 2333222 244689999998864
No 103
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=94.04 E-value=0.18 Score=46.74 Aligned_cols=67 Identities=21% Similarity=0.279 Sum_probs=49.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
|+|+||++|| .+++.++++..+...|+++++..++.- +..+.+.+.|. +.. +.+++++++|+|+.-.
T Consensus 1 l~~kkIgiIG-~G~mG~AiA~~L~~sG~~Viv~~~~~~----~~~~~a~~~Gv---~~~-s~~ea~~~ADiVvLaV 67 (314)
T TIGR00465 1 LKGKTVAIIG-YGSQGHAQALNLRDSGLNVIVGLRKGG----ASWKKATEDGF---KVG-TVEEAIPQADLIMNLL 67 (314)
T ss_pred CCcCEEEEEe-EcHHHHHHHHHHHHCCCeEEEEECcCh----hhHHHHHHCCC---EEC-CHHHHHhcCCEEEEeC
Confidence 5789999999 488999999999888988766554321 22344455553 333 5788999999999864
No 104
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=93.89 E-value=2.9 Score=40.32 Aligned_cols=168 Identities=13% Similarity=0.029 Sum_probs=94.1
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcC-----------CCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeC
Q 024871 13 RVSFETGFSLLGGHAIYLGPDDIQ-----------MGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVING 81 (261)
Q Consensus 13 R~SFe~A~~~LGg~~~~l~~~~s~-----------~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa 81 (261)
......=...+|.+++.+..-..+ +..|-|++|..+.=++-..+++-+.......+.+.+.-++|.+..
T Consensus 176 ~~el~~lL~~~Gl~~~~~~d~s~~~d~~~~~~~~~~~gg~~~~~i~~~~~A~~niv~~~~~~~~~a~~Le~~~giP~~~~ 255 (435)
T cd01974 176 MREIKRLLELMGVDYTILPDTSDVLDTPADGEYRMYPGGTTLEELKDAGNAKATLALQEYATEKTAKFLEKKCKVPVETL 255 (435)
T ss_pred HHHHHHHHHHcCCCEEEecccccccCCCCCCCccccCCCCCHHHHHhhccCcEEEEECccccHHHHHHHHHHhCCCeeec
Confidence 345555677899999875431111 224788999888766666666544344455667777789998885
Q ss_pred C-CCCCChhHH----HHHHHH------HHHH-----------hCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCC
Q 024871 82 L-TDYNHPCQI----MADALT------IIEH-----------VGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACP 139 (261)
Q Consensus 82 ~-~~~~HPtQ~----L~Dl~T------i~e~-----------~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P 139 (261)
. --+-+.|.. |++++- +.+. +..++|+|+++.||. ..+.++...+.-+|+++..+.-
T Consensus 256 ~~p~G~~~t~~~l~~l~~~~g~~~~~~i~~er~~~~~~~~~~~~~l~gkrv~i~g~~-~~~~~la~~L~elGm~v~~~~~ 334 (435)
T cd01974 256 NMPIGVAATDEFLMALSELTGKPIPEELEEERGRLVDAMTDSHQYLHGKKFALYGDP-DFLIGLTSFLLELGMEPVHVLT 334 (435)
T ss_pred CCCcChHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCh-HHHHHHHHHHHHCCCEEEEEEe
Confidence 3 222333322 223221 1111 124789999999984 3467777777789998865442
Q ss_pred CCCCC--CHHHHHHHHHh--C-CCeEEEEcCHH---HHhC--CCCEEEEecc
Q 024871 140 KGFEP--DKETVEKARKA--G-ISKIEITNDPK---EVVQ--GADVVYSDVW 181 (261)
Q Consensus 140 ~~~~~--~~~~~~~~~~~--g-~~~i~~~~d~~---~a~~--~aDviy~~~w 181 (261)
..... .+++...+++. + ...+....|+. +.++ +.|+++...|
T Consensus 335 ~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~d~~e~~~~i~~~~pDliiG~s~ 386 (435)
T cd01974 335 GNGGKRFEKEMQALLDASPYGAGAKVYPGKDLWHLRSLLFTEPVDLLIGNTY 386 (435)
T ss_pred CCCCHHHHHHHHHHHhhcCCCCCcEEEECCCHHHHHHHHhhcCCCEEEECcc
Confidence 11111 22233333332 1 12344445543 3332 4788887754
No 105
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.76 E-value=1.5 Score=40.20 Aligned_cols=169 Identities=16% Similarity=0.141 Sum_probs=108.9
Q ss_pred CChhhHHH-HHHHHHhcCCeEEEeC-CCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhh-------C
Q 024871 8 PSMRTRVS-FETGFSLLGGHAIYLG-PDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKF-------A 74 (261)
Q Consensus 8 ~StRTR~S-Fe~A~~~LGg~~~~l~-~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~-------~ 74 (261)
|+.++-.. =..++..+|....... +.++ ..|.+.+.++-|+.= .|.|++-.+-...+ .++-+. -
T Consensus 45 ~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~---s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVD 121 (284)
T PRK14177 45 PASETYVSMKVKACHKVGMGSEMIRLKEQT---TTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALEKDVD 121 (284)
T ss_pred hhHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccccc
Confidence 34444433 3678999999876543 2211 245566666666653 57888877643222 222111 0
Q ss_pred CCcEEeC-----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHH
Q 024871 75 TVPVING-----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKET 148 (261)
Q Consensus 75 ~vPVINa-----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~ 148 (261)
++--+|. +.....||-+++ ++.|.|+++ +++|+++++||-.+-|..=+..++..-++++++|...
T Consensus 122 Gl~~~n~g~l~~g~~~~~PcTp~a-vi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~-------- 192 (284)
T PRK14177 122 GVTTLSFGKLSMGVETYLPCTPYG-MVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK-------- 192 (284)
T ss_pred cCChhhHHHHHcCCCCCCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------
Confidence 1112342 124578997755 556777776 6999999999987778888888777778999988531
Q ss_pred HHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 149 VEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 149 ~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++..++||+|++-. |.. .-++.+++ ++++++.-++-
T Consensus 193 --------------T~~l~~~~~~ADIvIsAv----Gk~------------~~i~~~~i---k~gavVIDvGi 232 (284)
T PRK14177 193 --------------TQNLPSIVRQADIIVGAV----GKP------------EFIKADWI---SEGAVLLDAGY 232 (284)
T ss_pred --------------CCCHHHHHhhCCEEEEeC----CCc------------CccCHHHc---CCCCEEEEecC
Confidence 457888999999999975 532 22677665 47778887775
No 106
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=93.61 E-value=1.2 Score=41.89 Aligned_cols=161 Identities=16% Similarity=0.138 Sum_probs=103.1
Q ss_pred HHHHHHhcCCeEEEeCC-CCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcc--hHHHHhhhC-------CCcEEeC--
Q 024871 16 FETGFSLLGGHAIYLGP-DDIQMGKREETRDAARVLCRY--NDIIMARVFGHQ--DILDLAKFA-------TVPVING-- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~~-~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~--~~~~~a~~~-------~vPVINa-- 81 (261)
=..++..+|.+.....- .++ ..|.+.+.+.-|+.= .|.|++-.+-.. .-.++.+.- +.-=+|.
T Consensus 107 k~K~a~~~GI~~~~~~l~~~~---te~ell~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~KDVDGl~p~N~G~ 183 (345)
T PLN02897 107 KIKACEETGIKSLLAELPEDC---TEGQILSALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRLEKDVDGFHPLNVGN 183 (345)
T ss_pred HHHHHHhcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCccCCCHHHHHH
Confidence 35688999998765432 211 234466666666543 578888776332 222222211 1112231
Q ss_pred --C---CCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHh
Q 024871 82 --L---TDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 82 --~---~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
. .....||-+.+=+ .|.++++ .++|+++++||-.+-|..=+..++..-++++++|.-.
T Consensus 184 L~~~~~~~~~~PCTp~avi-~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~--------------- 247 (345)
T PLN02897 184 LAMRGREPLFVSCTPKGCV-ELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAF--------------- 247 (345)
T ss_pred HhcCCCCCCCcCCCHHHHH-HHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCC---------------
Confidence 1 2356899877744 4556666 6999999999987777777777777778999887421
Q ss_pred CCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 156 GISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 156 g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++.+++||+|++-. |.. .-|+.+++ ++++++.-.+-
T Consensus 248 -------T~nl~~~~~~ADIvIsAv----Gkp------------~~v~~d~v---k~GavVIDVGi 287 (345)
T PLN02897 248 -------TKDPEQITRKADIVIAAA----GIP------------NLVRGSWL---KPGAVVIDVGT 287 (345)
T ss_pred -------CCCHHHHHhhCCEEEEcc----CCc------------CccCHHHc---CCCCEEEEccc
Confidence 457888999999999975 542 22777775 47888887765
No 107
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.52 E-value=1.9 Score=39.66 Aligned_cols=159 Identities=14% Similarity=0.065 Sum_probs=103.0
Q ss_pred HHHHHhcCCeEEE--eCCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhhC-------CCcEEeC--
Q 024871 17 ETGFSLLGGHAIY--LGPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKFA-------TVPVING-- 81 (261)
Q Consensus 17 e~A~~~LGg~~~~--l~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~~-------~vPVINa-- 81 (261)
..++..+|..... ++... ..|.+.+.++-|+.- +|.|++-.+-...+ .++.+.- ++-=+|.
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~~----~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~ 128 (293)
T PRK14185 53 VKACEECGFKSSLIRYESDV----TEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYRKDVDGFHPINVGR 128 (293)
T ss_pred HHHHHHcCCEEEEEECCCCC----CHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcccCcCCCCHhhHHH
Confidence 5689999998854 43332 245677777777654 57888877643222 2222110 1112342
Q ss_pred ---CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcC----CcEEEEeCCCCCCCCHHHHHHHH
Q 024871 82 ---LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVI----PFHFVCACPKGFEPDKETVEKAR 153 (261)
Q Consensus 82 ---~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~----g~~~~~~~P~~~~~~~~~~~~~~ 153 (261)
+.....||-+++= +.|.++++ .++|+++++||-.+-|..=+..++..- ++++++|.-+
T Consensus 129 l~~~~~~~~PcTp~av-~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~------------- 194 (293)
T PRK14185 129 MSIGLPCFVSATPNGI-LELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR------------- 194 (293)
T ss_pred HhCCCCCCCCCCHHHH-HHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC-------------
Confidence 1245789988774 45666666 699999999998777777776666543 7888877432
Q ss_pred HhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 154 KAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 154 ~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+.+.+++||+|++-. |.. --++.+++ ++++++.-++-
T Consensus 195 ---------T~nl~~~~~~ADIvIsAv----Gkp------------~~i~~~~v---k~gavVIDvGi 234 (293)
T PRK14185 195 ---------SKNLKKECLEADIIIAAL----GQP------------EFVKADMV---KEGAVVIDVGT 234 (293)
T ss_pred ---------CCCHHHHHhhCCEEEEcc----CCc------------CccCHHHc---CCCCEEEEecC
Confidence 357888999999999975 542 22677665 47888887765
No 108
>PLN00106 malate dehydrogenase
Probab=93.34 E-value=0.33 Score=45.21 Aligned_cols=78 Identities=15% Similarity=0.184 Sum_probs=50.4
Q ss_pred HhCCCCCcEEEEEcCCCchHHHHHHHHhcCCc--EEEEeCCCCCCCCHHHHHHHHHhCCCeEEE---EcCHHHHhCCCCE
Q 024871 101 HVGRLEGTKVVYVGDGNNIVHSWLLMASVIPF--HFVCACPKGFEPDKETVEKARKAGISKIEI---TNDPKEVVQGADV 175 (261)
Q Consensus 101 ~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~---~~d~~~a~~~aDv 175 (261)
.+|.-...||+++|-.++|..+++.++...+. +++++-.+. +..+.++.........+.- .+|+.++++|+|+
T Consensus 12 ~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDi 89 (323)
T PLN00106 12 AKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHINTPAQVRGFLGDDQLGDALKGADL 89 (323)
T ss_pred cccCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCE
Confidence 35666678999999878999999888775443 777776544 3332233221111112321 3456889999999
Q ss_pred EEEec
Q 024871 176 VYSDV 180 (261)
Q Consensus 176 iy~~~ 180 (261)
|+.+.
T Consensus 90 VVitA 94 (323)
T PLN00106 90 VIIPA 94 (323)
T ss_pred EEEeC
Confidence 99874
No 109
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=93.11 E-value=0.83 Score=39.66 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=49.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEc-C-HHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITN-D-PKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~-d-~~~a~~~aDviy~~~ 180 (261)
+++|++|++||. +.++-..+..+...|.++++++|+ +.+++.+.+ +.| .+++.. + ..+-++++|+|+.-+
T Consensus 6 ~l~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~---~~~~l~~l~-~~~--~i~~~~~~~~~~dl~~~~lVi~at 77 (205)
T TIGR01470 6 NLEGRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEE---LESELTLLA-EQG--GITWLARCFDADILEGAFLVIAAT 77 (205)
T ss_pred EcCCCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCC---CCHHHHHHH-HcC--CEEEEeCCCCHHHhCCcEEEEECC
Confidence 478999999995 788888888888899999999995 334444433 333 344422 1 244589999998864
No 110
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.10 E-value=2.3 Score=39.03 Aligned_cols=160 Identities=16% Similarity=0.107 Sum_probs=104.0
Q ss_pred HHHHHHhcCCeEEEe--CCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcc--hHHHHhhh-------CCCcEEeC-
Q 024871 16 FETGFSLLGGHAIYL--GPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQ--DILDLAKF-------ATVPVING- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l--~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~--~~~~~a~~-------~~vPVINa- 81 (261)
=..+|..+|.++... +...+ .|.+.+.++-|+.= .|.|++-.+-.. .-.++.+. -++--.|.
T Consensus 53 k~k~a~~~Gi~~~~~~l~~~~t----~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~KDVDGl~~~n~g 128 (284)
T PRK14193 53 KHRDCAEVGITSIRRDLPADAT----QEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPAKDADGLHPTNLG 128 (284)
T ss_pred HHHHHHHcCCEEEEEECCCCCC----HHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcccCccCCChhhhh
Confidence 356889999987544 33322 34466666666553 578888776432 22222111 11223342
Q ss_pred ----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhc--CCcEEEEeCCCCCCCCHHHHHHHHH
Q 024871 82 ----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASV--IPFHFVCACPKGFEPDKETVEKARK 154 (261)
Q Consensus 82 ----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~--~g~~~~~~~P~~~~~~~~~~~~~~~ 154 (261)
+.....||-+.+ ++.|.+++| .++|+++++||-.+-|..=+..++.. -++++++|.-+
T Consensus 129 ~l~~~~~~~~PcTp~a-v~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~-------------- 193 (284)
T PRK14193 129 RLVLNEPAPLPCTPRG-IVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG-------------- 193 (284)
T ss_pred HHhCCCCCCCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------------
Confidence 124468997766 556667777 69999999999877788877777766 58888888431
Q ss_pred hCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 155 AGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 155 ~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++.+++||+|++-. |.. --|+.+++ ++++++.-++-
T Consensus 194 --------T~~l~~~~k~ADIvV~Av----Gkp------------~~i~~~~i---k~GavVIDvGi 233 (284)
T PRK14193 194 --------TRDLAAHTRRADIIVAAA----GVA------------HLVTADMV---KPGAAVLDVGV 233 (284)
T ss_pred --------CCCHHHHHHhCCEEEEec----CCc------------CccCHHHc---CCCCEEEEccc
Confidence 457889999999999975 542 12777765 47788888775
No 111
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=92.96 E-value=1.5 Score=42.75 Aligned_cols=155 Identities=12% Similarity=0.039 Sum_probs=91.2
Q ss_pred HHHhcCCeEEEeCCCC------------cCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCC-CC
Q 024871 19 GFSLLGGHAIYLGPDD------------IQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLT-DY 85 (261)
Q Consensus 19 A~~~LGg~~~~l~~~~------------s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~-~~ 85 (261)
=...+|.+++.+.+-+ +....|-|++|..++=++-..+++ +.......+.+.+.-++|.+.... -+
T Consensus 190 lL~~~Gl~v~~lpd~s~~ld~~l~~~~~~~~~gg~t~eei~~~~~A~lniv~-~~~~~~~a~~Lee~~GiP~~~~~~p~G 268 (455)
T PRK14476 190 IIEAFGLEPIILPDLSGSLDGHLPDDWTPTTLGGTTLEEIRELGRSAATIAI-GESMRKAAEALEARTGVPYLVFPSLTG 268 (455)
T ss_pred HHHHcCCceEEecCccccccCCCCCcccccCCCCCCHHHHHhhccCcEEEEe-cHHHHHHHHHHHHHhCCCeEecCCCcC
Confidence 4467899987764321 112357899998887777677765 433344567777788999887521 11
Q ss_pred CCh----hHHHHHHHH------HHHH-----------hCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCC
Q 024871 86 NHP----CQIMADALT------IIEH-----------VGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEP 144 (261)
Q Consensus 86 ~HP----tQ~L~Dl~T------i~e~-----------~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~ 144 (261)
.+- -+.|++++- +.++ ...+.|+|+++.||. ..+.+++..+.-+|+++..+.-...
T Consensus 269 ~~~t~~~l~~l~~~~g~~~~~~i~~er~~~~~~~~d~~~~l~gkrvai~~~~-~~~~~la~~L~elG~~v~~~~~~~~-- 345 (455)
T PRK14476 269 LEAVDRFIATLAQISGRPVPAKYRRQRAQLQDAMLDGHFYFGGKRVAIAAEP-DLLLALGSFLAEMGAEIVAAVTTTK-- 345 (455)
T ss_pred hHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCH-HHHHHHHHHHHHCCCEEEEEEeCCC--
Confidence 222 233333331 1111 123679999999985 4677787777789998765442221
Q ss_pred CHHHHHHHHHhCCCeEEEEcC---HHHHhCCCCEEEEeccc
Q 024871 145 DKETVEKARKAGISKIEITND---PKEVVQGADVVYSDVWA 182 (261)
Q Consensus 145 ~~~~~~~~~~~g~~~i~~~~d---~~~a~~~aDviy~~~w~ 182 (261)
.+..+.. ....+. ..| +++.+++.|+|+...|.
T Consensus 346 -~~~~~~~---~~~~i~-~~D~~~le~~~~~~dliig~s~~ 381 (455)
T PRK14476 346 -SPALEDL---PAEEVL-IGDLEDLEELAEGADLLITNSHG 381 (455)
T ss_pred -cHHHHhC---CcCcEE-eCCHHHHHHhccCCCEEEECchh
Confidence 1122221 212343 345 45667789999998753
No 112
>PRK06988 putative formyltransferase; Provisional
Probab=92.96 E-value=1 Score=41.66 Aligned_cols=101 Identities=24% Similarity=0.257 Sum_probs=60.4
Q ss_pred cEEEEEcCCCchHHHHHHHHh-cCCcEEEEeCCCCC--C-CCHHHHHHHHHhCCCeEEEEcCH-----HHHh--CCCCEE
Q 024871 108 TKVVYVGDGNNIVHSWLLMAS-VIPFHFVCACPKGF--E-PDKETVEKARKAGISKIEITNDP-----KEVV--QGADVV 176 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~-~~g~~~~~~~P~~~--~-~~~~~~~~~~~~g~~~i~~~~d~-----~~a~--~~aDvi 176 (261)
+||+|+|...--..++-.+.. .+....++..|+.- . ....+.+.|+++|...+ ...++ .+.+ .+.|++
T Consensus 3 mkIvf~Gs~~~a~~~L~~L~~~~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~-~~~~~~~~~~~~~l~~~~~Dli 81 (312)
T PRK06988 3 PRAVVFAYHNVGVRCLQVLLARGVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVI-TPADPNDPELRAAVAAAAPDFI 81 (312)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEE-ccccCCCHHHHHHHHhcCCCEE
Confidence 689999985433444433332 23344444444221 1 12356678888886433 22222 2223 368888
Q ss_pred EEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCCc
Q 024871 177 YSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERGV 226 (261)
Q Consensus 177 y~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg~ 226 (261)
++-.| .+.|.+++++..+-.++-+|| ||.+||.
T Consensus 82 v~~~~-----------------~~iip~~il~~~~~g~iNiHpslLP~yRG~ 116 (312)
T PRK06988 82 FSFYY-----------------RHMIPVDLLALAPRGAYNMHGSLLPKYRGR 116 (312)
T ss_pred EEehh-----------------ccccCHHHHhcCCCCEEEeeCccccCCCCc
Confidence 87754 245788888888888999999 8988853
No 113
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=92.84 E-value=1.4 Score=37.77 Aligned_cols=67 Identities=28% Similarity=0.359 Sum_probs=38.6
Q ss_pred EEEEEcCCC-chHHHHHHHH---hcCC-cEEEEeCCCCCCCCHHHHH--------HHHHhC-CCeEEEEcCHHHHhCCCC
Q 024871 109 KVVYVGDGN-NIVHSWLLMA---SVIP-FHFVCACPKGFEPDKETVE--------KARKAG-ISKIEITNDPKEVVQGAD 174 (261)
Q Consensus 109 ~i~~vGd~~-~v~~S~~~~~---~~~g-~~~~~~~P~~~~~~~~~~~--------~~~~~g-~~~i~~~~d~~~a~~~aD 174 (261)
||+++|.++ .....+...+ ..++ .++++.-. +++-++ ..++.| ..+++.+.|.++|+++||
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Di-----d~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gAD 75 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDI-----DEERLEIVERLARRMVEEAGADLKVEATTDRREALEGAD 75 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-S-----CHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTES
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcC-----CHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCC
Confidence 688888764 3444433332 2333 35555543 333322 122333 246788999999999999
Q ss_pred EEEEec
Q 024871 175 VVYSDV 180 (261)
Q Consensus 175 viy~~~ 180 (261)
+|++.-
T Consensus 76 fVi~~i 81 (183)
T PF02056_consen 76 FVINQI 81 (183)
T ss_dssp EEEE--
T ss_pred EEEEEe
Confidence 999974
No 114
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=92.81 E-value=6.1 Score=37.66 Aligned_cols=119 Identities=13% Similarity=0.042 Sum_probs=73.8
Q ss_pred HHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCCh----hHH
Q 024871 16 FETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHP----CQI 91 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HP----tQ~ 91 (261)
+..=...+|.++..+ +..+.|++|.-+.-++-..+++.+.......+.+.+.-++|.+...--+-+. -+.
T Consensus 176 l~~lL~~~Gl~v~~~------~~~~~s~eei~~~~~A~lniv~~~~~~~~~a~~L~~~fGip~~~~~p~G~~~t~~~l~~ 249 (410)
T cd01968 176 VKPLLEKLGIRVLAS------ITGDSRVDEIRRAHRAKLNVVQCSKSMIYLARKMEEKYGIPYIEVSFYGIRDTSKSLRN 249 (410)
T ss_pred HHHHHHHcCCeEEEE------eCCCCCHHHHHhhhhCcEEEEEchhHHHHHHHHHHHHhCCCeEecCcCcHHHHHHHHHH
Confidence 334455677777643 2335678888777677777766554445566777777889988642011122 233
Q ss_pred HHHHHH-----------HH-----------HHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCC
Q 024871 92 MADALT-----------II-----------EHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKG 141 (261)
Q Consensus 92 L~Dl~T-----------i~-----------e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~ 141 (261)
|++++- +. +....+.|+++++.||...+ .+++..+.-+|++++.++-+.
T Consensus 250 ia~~~g~~~~~~~~~~~i~~e~~~~~~~l~~~~~~l~gkrv~i~~~~~~~-~~la~~l~elGm~v~~~~~~~ 320 (410)
T cd01968 250 IAELLGDEELIERTEELIAREEARLRPELAPYRARLEGKKAALYTGGVKS-WSLVSALQDLGMEVVATGTQK 320 (410)
T ss_pred HHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCchH-HHHHHHHHHCCCEEEEEeccc
Confidence 444331 11 11124789999999986654 778888888999988776433
No 115
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=92.66 E-value=1.4 Score=41.70 Aligned_cols=94 Identities=16% Similarity=0.147 Sum_probs=61.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH-hCCCeEEEE----cCHHHHhCCCCEEEEe
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK-AGISKIEIT----NDPKEVVQGADVVYSD 179 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~-~g~~~i~~~----~d~~~a~~~aDviy~~ 179 (261)
+.+.+++++|- +++.+..+..+..+|++++++.+. ++..+.+.. .| ..+... +++.++++++|+|++.
T Consensus 165 l~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~-----~~~~~~l~~~~g-~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 165 VEPGDVTIIGG-GVVGTNAAKMANGLGATVTILDIN-----IDRLRQLDAEFG-GRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECC-----HHHHHHHHHhcC-ceeEeccCCHHHHHHHHccCCEEEEc
Confidence 67789999996 689999999999999988777542 222333333 33 223221 3467889999999987
Q ss_pred c-ccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEe
Q 024871 180 V-WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFM 217 (261)
Q Consensus 180 ~-w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~m 217 (261)
. |.... .+--++++.++..+++.+|.
T Consensus 238 ~~~~g~~------------~p~lit~~~l~~mk~g~vIv 264 (370)
T TIGR00518 238 VLIPGAK------------APKLVSNSLVAQMKPGAVIV 264 (370)
T ss_pred cccCCCC------------CCcCcCHHHHhcCCCCCEEE
Confidence 4 42210 12336777777777665544
No 116
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=92.59 E-value=1.4 Score=42.91 Aligned_cols=75 Identities=17% Similarity=0.132 Sum_probs=48.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhcC-------Cc--EEEEeCCCCCCCCHHHHHHHHHh-C-CCeEEEEcCHHHHhCCCC
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASVI-------PF--HFVCACPKGFEPDKETVEKARKA-G-ISKIEITNDPKEVVQGAD 174 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~~-------g~--~~~~~~P~~~~~~~~~~~~~~~~-g-~~~i~~~~d~~~a~~~aD 174 (261)
+-+||+++|..++|..+++..+..- |+ +++++--..-....+.+|..... . ...+.++.+..+.++|||
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaD 178 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAE 178 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCC
Confidence 3489999998788888887766544 43 67766443333344444433322 0 134666667788999999
Q ss_pred EEEEec
Q 024871 175 VVYSDV 180 (261)
Q Consensus 175 viy~~~ 180 (261)
+|+.+.
T Consensus 179 iVVitA 184 (444)
T PLN00112 179 WALLIG 184 (444)
T ss_pred EEEECC
Confidence 998864
No 117
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=92.48 E-value=1.5 Score=42.06 Aligned_cols=154 Identities=17% Similarity=0.203 Sum_probs=84.5
Q ss_pred HHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChh----HHHHHH
Q 024871 20 FSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPC----QIMADA 95 (261)
Q Consensus 20 ~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPt----Q~L~Dl 95 (261)
...+|.+++.. +..|-|++|.-++=++-..+++.+.......+.+.+.-++|.+....-..+.| +.|+++
T Consensus 184 L~~~Gl~v~~~------~~~~~t~~ei~~~~~A~lnlv~~~~~~~~~A~~L~er~GiP~~~~~~~G~~~t~~~l~~la~~ 257 (415)
T cd01977 184 FERMGIQVLST------FTGNGTYDDLRWMHRAKLNVVNCARSAGYIANELKKRYGIPRLDVDGFGFEYCAESLRKIGAF 257 (415)
T ss_pred HHHcCCeEEEE------ECCCCCHHHHHhcccCCEEEEEchhHHHHHHHHHHHHhCCCeEEeccCCHHHHHHHHHHHHHH
Confidence 44566666421 23467777766654445556555444445667777788999887532223333 334444
Q ss_pred HHHH--------H-----------HhCCCCCcEEEEEcCCCchHHHHHHHHh-cCCcEEEEeCCCCCCCCHHHHHHHHHh
Q 024871 96 LTII--------E-----------HVGRLEGTKVVYVGDGNNIVHSWLLMAS-VIPFHFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 96 ~Ti~--------e-----------~~g~l~~~~i~~vGd~~~v~~S~~~~~~-~~g~~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
+-+. + ....+.|+||++.||... +.++...+. -+|++++.++.. +...+++.+..++.
T Consensus 258 ~g~~~~~e~~i~~~~~~~r~~l~~~~~~l~Gk~vai~~~~~~-~~~la~~l~~elG~~v~~i~~~-~~~~~~~~~~~~~~ 335 (415)
T cd01977 258 FGIEDRAEAVIAEEMAKWKPELDWYKERLKGKKVCIWTGGPK-LWHWTKVIEDELGMQVVAMSSK-FGHQEDFEKVIARG 335 (415)
T ss_pred hCcchhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCch-HHHHHHHHHHhcCCEEEEEEEE-eccHHHHHHHHHhc
Confidence 3221 1 113489999999988643 467776665 699998877542 22233333333333
Q ss_pred CCCeEEEEcCH---H--HHh--CCCCEEEEeccc
Q 024871 156 GISKIEITNDP---K--EVV--QGADVVYSDVWA 182 (261)
Q Consensus 156 g~~~i~~~~d~---~--~a~--~~aDviy~~~w~ 182 (261)
+...+.+ .|. + +.+ .+.|+|+...|.
T Consensus 336 ~~~~~~v-~d~~~~e~~~~~~~~~pdliig~s~~ 368 (415)
T cd01977 336 GEGTIYI-DDPNELEFFEILEMLKPDIILTGPRV 368 (415)
T ss_pred CCceEEE-eCCCHHHHHHHHHhcCCCEEEecCcc
Confidence 2122332 232 1 112 357888887643
No 118
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=92.44 E-value=5.2 Score=38.79 Aligned_cols=117 Identities=12% Similarity=0.040 Sum_probs=75.4
Q ss_pred HHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCCh----hH
Q 024871 15 SFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHP----CQ 90 (261)
Q Consensus 15 SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HP----tQ 90 (261)
....=...+|.++... +..+.|++|.-++-++-..+++.+.......+.+.+.-++|.++..--+... .+
T Consensus 214 el~~lL~~~Gl~v~~~------~~~~~s~eei~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP~~~~~~~G~~~T~~~L~ 287 (456)
T TIGR01283 214 HVKPLLEKLGIRVLAT------ITGDSRYAEVQTAHRAKLNMVQCSKSMINLARKMEEKYGIPYFEGSFYGIEDTSKALR 287 (456)
T ss_pred HHHHHHHHcCCeEEEE------eCCCCcHHHHHhcccCcEEEEECHhHHHHHHHHHHHHcCCCEEecCCCcHHHHHHHHH
Confidence 3444466788887652 2346788888887777777766554445567788778899998842111222 23
Q ss_pred HHHHHHH-----------H----------H-HHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeC
Q 024871 91 IMADALT-----------I----------I-EHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCAC 138 (261)
Q Consensus 91 ~L~Dl~T-----------i----------~-e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~ 138 (261)
.|++++- + . .....|+|+++++.++. ....|++..+.-+|++++.++
T Consensus 288 ~Ia~~lg~~~~~~~~~~~i~~e~~~~~~~l~~~~~~L~Gkrv~i~~g~-~~~~~l~~~l~elGmevv~~~ 356 (456)
T TIGR01283 288 DIADLFGDEELLKRTEELIAREEAKIRPALEPYRERLKGKKAAIYTGG-VKSWSLVSALQDLGMEVVATG 356 (456)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCC-chHHHHHHHHHHCCCEEEEEe
Confidence 4444442 1 0 11134899999988775 456688888888999988764
No 119
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=92.35 E-value=1.3 Score=43.14 Aligned_cols=156 Identities=12% Similarity=0.108 Sum_probs=80.5
Q ss_pred HHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChh----HHHHH
Q 024871 19 GFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPC----QIMAD 94 (261)
Q Consensus 19 A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPt----Q~L~D 94 (261)
=...+|.+++.. +..+-|++|..++=++-..+++.+.......+.+.+.-++|.++...-+-..| +.|++
T Consensus 220 lL~~~Gl~v~~~------~~g~~s~~ei~~~~~A~lniv~~~~~~~~~A~~Le~~~GiP~~~~~~~G~~~T~~~l~~ia~ 293 (457)
T TIGR01284 220 YFERMGIQVLST------FTGNGCYDELRWMHRAKLNVVRCARSANYIANELEERYGIPRLDIDFFGFEYCAKNLRKIGE 293 (457)
T ss_pred HHHHcCCeEEEE------ECCCCCHHHHHhccccCEEEEEChHHHHHHHHHHHHHhCCCeEecccCCHHHHHHHHHHHHH
Confidence 345667766521 12345666666644444555544333444566777777899887532111111 22233
Q ss_pred HHHHH------------------H-HhCCCCCcEEEEEcCCCchHHHHHHHHh-cCCcEEEEeCCCCCCCCHHHHHHHHH
Q 024871 95 ALTII------------------E-HVGRLEGTKVVYVGDGNNIVHSWLLMAS-VIPFHFVCACPKGFEPDKETVEKARK 154 (261)
Q Consensus 95 l~Ti~------------------e-~~g~l~~~~i~~vGd~~~v~~S~~~~~~-~~g~~~~~~~P~~~~~~~~~~~~~~~ 154 (261)
++-+. + ....|.|+|+++.|+.. -+.++...+. -+|++++.++... ...+++.+....
T Consensus 294 ~~g~~~~~e~~i~~~~~~~~~~ld~~~~~L~GkrvaI~~~~~-~~~~l~~~l~~ElGmevv~~~~~~-~~~~~~~~~~~~ 371 (457)
T TIGR01284 294 FFGIEERAERVIEEEMAKWKPELDWYKERLRGKKVWVWSGGP-KLWHWPRPLEDELGMEVVAVSTKF-GHEDDYEKIIAR 371 (457)
T ss_pred HhCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCc-HHHHHHHHHHHhCCCEEEEEEEEe-CCHHHHHHHHHh
Confidence 32111 1 12458999999998864 4467777666 4999988765422 112222222223
Q ss_pred hCCCeEEEEc-CH---HHHh--CCCCEEEEeccc
Q 024871 155 AGISKIEITN-DP---KEVV--QGADVVYSDVWA 182 (261)
Q Consensus 155 ~g~~~i~~~~-d~---~~a~--~~aDviy~~~w~ 182 (261)
.+...+.+.+ +. ++.+ .+.|+++...|.
T Consensus 372 ~~~~~~~i~d~~~~e~~~~i~~~~pDllig~~~~ 405 (457)
T TIGR01284 372 VREGTVIIDDPNELELEEIIEKYKPDIILTGIRE 405 (457)
T ss_pred cCCCeEEEeCCCHHHHHHHHHhcCCCEEEecCCc
Confidence 2212232221 22 2222 368999987653
No 120
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=92.25 E-value=0.61 Score=45.50 Aligned_cols=72 Identities=22% Similarity=0.206 Sum_probs=50.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCC-CCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKG-FEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~-~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.|+|++|+++|- +...|..+.-+.-.|+++++.--++ ......-.+.|.+.|. . ..+++|+++.||+|+...
T Consensus 33 ~LkgKtIaIIGy-GSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF---~-v~~~~Ea~~~ADvVviLl 105 (487)
T PRK05225 33 YLKGKKIVIVGC-GAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGF---K-VGTYEELIPQADLVINLT 105 (487)
T ss_pred HhCCCEEEEEcc-CHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCC---c-cCCHHHHHHhCCEEEEcC
Confidence 488999999996 6677766666777788888665443 2222223344555664 3 257999999999999874
No 121
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=92.13 E-value=1.2 Score=42.77 Aligned_cols=76 Identities=20% Similarity=0.159 Sum_probs=51.8
Q ss_pred HHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEE
Q 024871 99 IEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVY 177 (261)
Q Consensus 99 ~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy 177 (261)
...+|.+.|.+|+++|- +.+....+..+...|. +++++.+.. +...+.+++.|. .+...+++.+++.++|+|+
T Consensus 174 ~~~~~~~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~----~ra~~la~~~g~-~~~~~~~~~~~l~~aDvVI 247 (423)
T PRK00045 174 KQIFGDLSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTL----ERAEELAEEFGG-EAIPLDELPEALAEADIVI 247 (423)
T ss_pred HHhhCCccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCH----HHHHHHHHHcCC-cEeeHHHHHHHhccCCEEE
Confidence 34557799999999996 6677777777767787 677665532 122234555553 3333467778899999999
Q ss_pred Eec
Q 024871 178 SDV 180 (261)
Q Consensus 178 ~~~ 180 (261)
+.+
T Consensus 248 ~aT 250 (423)
T PRK00045 248 SST 250 (423)
T ss_pred ECC
Confidence 975
No 122
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=92.02 E-value=0.94 Score=40.06 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=50.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEc-CH-HHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITN-DP-KEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~-d~-~~a~~~aDviy~~~ 180 (261)
.++|++|++||. +.|+...+..+..+|.++++++|. +.+++.+.++ .| .+++.. +. ++-++++++|++-+
T Consensus 22 ~~~~~~VLVVGG-G~VA~RK~~~Ll~~gA~VtVVap~---i~~el~~l~~-~~--~i~~~~r~~~~~dl~g~~LViaAT 93 (223)
T PRK05562 22 LSNKIKVLIIGG-GKAAFIKGKTFLKKGCYVYILSKK---FSKEFLDLKK-YG--NLKLIKGNYDKEFIKDKHLIVIAT 93 (223)
T ss_pred ECCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCC---CCHHHHHHHh-CC--CEEEEeCCCChHHhCCCcEEEECC
Confidence 367999999996 789988888888999999999996 3455544433 33 244332 11 23478999999875
No 123
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=91.84 E-value=7.9 Score=37.25 Aligned_cols=123 Identities=10% Similarity=-0.067 Sum_probs=76.3
Q ss_pred HHHHHHHhcCCeEEEeCCCC------------cCCCCCCCHHHHHHHHhhhccEEEEee--CCcchHHHHhhhCCCcEEe
Q 024871 15 SFETGFSLLGGHAIYLGPDD------------IQMGKREETRDAARVLCRYNDIIMARV--FGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 15 SFe~A~~~LGg~~~~l~~~~------------s~~~kgEs~~Dt~~~ls~~~D~iv~R~--~~~~~~~~~a~~~~vPVIN 80 (261)
-...=...+|.+++.+..-+ .-...|-|++|..+.-++-..+++-++ ......+.+.+.-++|.+.
T Consensus 172 ei~~lL~~~Gl~~~~~~d~s~~~~~~~~~~~~~~~~~g~~~~~i~~~~~A~lniv~~~~~~~g~~~A~~L~e~~giP~~~ 251 (429)
T cd03466 172 EIKEILREFGIEYILLPDTSETLDGPFWGEYHRLPSGGTPISEIKGMGGAKATIELGMFVDHGLSAGSYLEEEFGIPNYR 251 (429)
T ss_pred HHHHHHHHcCCCeEEecCccccccCCCCCCcceeCCCCCCHHHHHhhccCcEEEEEccCccchHHHHHHHHHHHCCCeee
Confidence 34455678899997754311 112358899999998777788877653 2334567777888999776
Q ss_pred CCC-CCCChh----HHHHHHHH------HH-----------HHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeC
Q 024871 81 GLT-DYNHPC----QIMADALT------II-----------EHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCAC 138 (261)
Q Consensus 81 a~~-~~~HPt----Q~L~Dl~T------i~-----------e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~ 138 (261)
... -.-+.| +.|++++- +. +.+..+.|+|++++|| ...+.++...+.-+|++++.+.
T Consensus 252 ~~~P~G~~~t~~~l~~l~~~~g~~~~~~i~~~~~~~~~~~~d~~~~l~gkrv~v~g~-~~~~~~l~~~L~elG~~~~~v~ 330 (429)
T cd03466 252 LPLPIGLRATDEFMSLLSKLTGKPIPEKYTRERGRLLDAMIDAHKYNFGRKAAIYGE-PDFVVAITRFVLENGMVPVLIA 330 (429)
T ss_pred cCCCcChHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcC-HHHHHHHHHHHHHCCCEEEEEE
Confidence 421 222333 22333320 10 1112368999999998 3466777777777899875554
No 124
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=91.83 E-value=1.1 Score=36.76 Aligned_cols=72 Identities=28% Similarity=0.356 Sum_probs=53.6
Q ss_pred CCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCc
Q 024871 41 EETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNN 118 (261)
Q Consensus 41 Es~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~ 118 (261)
+++..|++-|-.++|+.++-...-+.+.++|+..++|+=+-.. ..||- +=.-+.+++++ .+.++++|||+.|
T Consensus 33 ~ev~e~iqeL~d~V~i~IASgDr~gsl~~lae~~gi~~~rv~a-~a~~e----~K~~ii~eLkk-~~~k~vmVGnGaN 104 (152)
T COG4087 33 SEVSETIQELHDMVDIYIASGDRKGSLVQLAEFVGIPVERVFA-GADPE----MKAKIIRELKK-RYEKVVMVGNGAN 104 (152)
T ss_pred HhhHHHHHHHHHhheEEEecCCcchHHHHHHHHcCCceeeeec-ccCHH----HHHHHHHHhcC-CCcEEEEecCCcc
Confidence 6777888888888999999877788999999999999988422 24553 12223344443 6789999999866
No 125
>PLN02285 methionyl-tRNA formyltransferase
Probab=91.79 E-value=1.3 Score=41.32 Aligned_cols=105 Identities=14% Similarity=0.170 Sum_probs=59.5
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhc-----CCcEEE--EeCCCC-----CC-CCHHHHHHHHHhCCCeEEEE--c----
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASV-----IPFHFV--CACPKG-----FE-PDKETVEKARKAGISKIEIT--N---- 164 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~-----~g~~~~--~~~P~~-----~~-~~~~~~~~~~~~g~~~i~~~--~---- 164 (261)
.-+.+||+|+|...--.+++-.+... .+.+++ +..|+. .. .+..+.+.|+++|+....+. .
T Consensus 3 ~~~~~kI~f~Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~~~~ 82 (334)
T PLN02285 3 SGRKKRLVFLGTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKAGE 82 (334)
T ss_pred CCCccEEEEEECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCccccCC
Confidence 34568999999754333333322221 244443 344432 11 12245677888886421111 1
Q ss_pred -CHHHHh--CCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCC
Q 024871 165 -DPKEVV--QGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERG 225 (261)
Q Consensus 165 -d~~~a~--~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg 225 (261)
+..+.+ .+.|++++-.| .+.|.+++++..+..++-+|| ||.+||
T Consensus 83 ~~~~~~l~~~~~Dliv~~~~-----------------~~ilp~~~l~~~~~g~iNiHpSLLP~yRG 131 (334)
T PLN02285 83 EDFLSALRELQPDLCITAAY-----------------GNILPQKFLDIPKLGTVNIHPSLLPLYRG 131 (334)
T ss_pred HHHHHHHHhhCCCEEEhhHh-----------------hhhcCHHHHhhccCCEEEEecccccCCCC
Confidence 111223 25677777643 245788888888888999999 899885
No 126
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=91.79 E-value=0.62 Score=37.89 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=45.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCC--cEEEEeCCCCCCCCHHHHHHHH--HhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIP--FHFVCACPKGFEPDKETVEKAR--KAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g--~~~~~~~P~~~~~~~~~~~~~~--~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+++|-.++|..+++..+..-+ -+++++-.+.-......+|... ........+..+..+++++||+|+.+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvita 77 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITA 77 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEec
Confidence 389999987899888877665544 4777765432111112222111 122234566668889999999999874
No 127
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=91.75 E-value=0.75 Score=38.20 Aligned_cols=67 Identities=16% Similarity=0.133 Sum_probs=47.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEc-CH-HHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITN-DP-KEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~-d~-~~a~~~aDviy~~~ 180 (261)
+++|++|.+||. ++|+...+..+...|.++++++|+- .+++. +.+ .+++.. .+ ++-++++|+|+..+
T Consensus 10 ~l~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIsp~~---~~~l~----~l~--~i~~~~~~~~~~dl~~a~lViaaT 78 (157)
T PRK06719 10 NLHNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVSPEI---CKEMK----ELP--YITWKQKTFSNDDIKDAHLIYAAT 78 (157)
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCcc---CHHHH----hcc--CcEEEecccChhcCCCceEEEECC
Confidence 589999999995 8899888888888899999998752 23332 222 222222 22 33589999999864
No 128
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=91.66 E-value=1.7 Score=38.77 Aligned_cols=71 Identities=20% Similarity=0.197 Sum_probs=46.6
Q ss_pred EEEEcCCCchHHHHHHHHhcCC----cEEEEeCCCCCCCCHHHHH---HHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 110 VVYVGDGNNIVHSWLLMASVIP----FHFVCACPKGFEPDKETVE---KARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 110 i~~vGd~~~v~~S~~~~~~~~g----~~~~~~~P~~~~~~~~~~~---~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
|+++|-++.+..+++..+...| .++++.-...-.+.....+ .+......+++.++|+++++++||+|+...
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~ 78 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITA 78 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECC
Confidence 5789986778888888776666 6777776544233222221 111111246777888899999999999853
No 129
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=91.56 E-value=0.76 Score=38.00 Aligned_cols=64 Identities=23% Similarity=0.311 Sum_probs=45.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+|+|= +++..-++.-+..-|.+++.. ...++-.+.+.+.| .+..++++|+++++|+|.+-.
T Consensus 2 ~~Ig~IGl-G~mG~~~a~~L~~~g~~v~~~-----d~~~~~~~~~~~~g---~~~~~s~~e~~~~~dvvi~~v 65 (163)
T PF03446_consen 2 MKIGFIGL-GNMGSAMARNLAKAGYEVTVY-----DRSPEKAEALAEAG---AEVADSPAEAAEQADVVILCV 65 (163)
T ss_dssp BEEEEE---SHHHHHHHHHHHHTTTEEEEE-----ESSHHHHHHHHHTT---EEEESSHHHHHHHBSEEEE-S
T ss_pred CEEEEEch-HHHHHHHHHHHHhcCCeEEee-----ccchhhhhhhHHhh---hhhhhhhhhHhhcccceEeec
Confidence 58999995 677777776666778887654 34445555555555 577899999999999999863
No 130
>PLN02256 arogenate dehydrogenase
Probab=91.42 E-value=1.2 Score=40.97 Aligned_cols=73 Identities=16% Similarity=0.146 Sum_probs=53.9
Q ss_pred HHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHh-CCCCEE
Q 024871 98 IIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVV-QGADVV 176 (261)
Q Consensus 98 i~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~-~~aDvi 176 (261)
++|...+-++++|+++| .+++..|++..+...|.+++.+.|.. . .+.+++.|. ...++.++++ .++|+|
T Consensus 27 ~~~~~~~~~~~kI~IIG-~G~mG~slA~~L~~~G~~V~~~d~~~----~--~~~a~~~gv---~~~~~~~e~~~~~aDvV 96 (304)
T PLN02256 27 LQEELEKSRKLKIGIVG-FGNFGQFLAKTFVKQGHTVLATSRSD----Y--SDIAAELGV---SFFRDPDDFCEEHPDVV 96 (304)
T ss_pred HhHhhccCCCCEEEEEe-eCHHHHHHHHHHHhCCCEEEEEECcc----H--HHHHHHcCC---eeeCCHHHHhhCCCCEE
Confidence 45666667889999999 68899999999888898888777653 1 234555663 3467888876 479998
Q ss_pred EEec
Q 024871 177 YSDV 180 (261)
Q Consensus 177 y~~~ 180 (261)
+.-.
T Consensus 97 ilav 100 (304)
T PLN02256 97 LLCT 100 (304)
T ss_pred EEec
Confidence 8853
No 131
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=91.39 E-value=5.9 Score=37.13 Aligned_cols=156 Identities=16% Similarity=0.136 Sum_probs=85.3
Q ss_pred HHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChhH----HH
Q 024871 17 ETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQ----IM 92 (261)
Q Consensus 17 e~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQ----~L 92 (261)
..=.+.+|.++..+-+. |-|++|.-+.-++-..+++-+.......+.+.+.-++|.+...--+.+.|. .|
T Consensus 172 ~~ll~~~G~~v~~~~~~------~~s~~~i~~~~~A~~nlv~~~~~g~~~a~~l~~~~g~p~~~~~p~G~~~t~~~l~~i 245 (399)
T cd00316 172 KRLLEEMGIRVNALFDG------GTTVEELRELGNAKLNLVLCRESGLYLARYLEEKYGIPYILINPIGLEATDAFLRKL 245 (399)
T ss_pred HHHHHHcCCcEEEEcCC------CCCHHHHHhhccCcEEEEecHhHHHHHHHHHHHHhCCCeEEeCCcCHHHHHHHHHHH
Confidence 33456778887665332 678888888666666666655345556677777789998874311112221 12
Q ss_pred HHHHH-------------------HHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeC-CCCCCCCHHHHHHH
Q 024871 93 ADALT-------------------IIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCAC-PKGFEPDKETVEKA 152 (261)
Q Consensus 93 ~Dl~T-------------------i~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~-P~~~~~~~~~~~~~ 152 (261)
++++- +.+....+.|++++++||. ....+++..+..+|+.+..+. +.......+-..+.
T Consensus 246 ~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~l~g~~~~i~~~~-~~~~~~~~~l~e~G~~v~~~~~~~~~~~~~~~~~~~ 324 (399)
T cd00316 246 AELFGIEKEVPEVIARERARLLDALADYHEYLGGKKVAIFGDG-DLLLALARFLLELGMEVVAAGTTFGHKADYERREEL 324 (399)
T ss_pred HHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCC-cHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHh
Confidence 22221 0011123789999999985 455666677777999876554 32211111111112
Q ss_pred HHhCCCeEEEEcCHH---HHhC--CCCEEEEec
Q 024871 153 RKAGISKIEITNDPK---EVVQ--GADVVYSDV 180 (261)
Q Consensus 153 ~~~g~~~i~~~~d~~---~a~~--~aDviy~~~ 180 (261)
...+ ..+....|.+ +.++ +.|+++...
T Consensus 325 ~~~~-~~~~~~~d~~~~~~~~~~~~pdl~ig~~ 356 (399)
T cd00316 325 LGEG-TEVVDDGDLEELEELIRELKPDLIIGGS 356 (399)
T ss_pred cCCC-CEEEeCCCHHHHHHHHhhcCCCEEEECC
Confidence 2222 3444444543 3444 478888875
No 132
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.35 E-value=2.2 Score=39.45 Aligned_cols=74 Identities=18% Similarity=0.163 Sum_probs=47.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhcCCc--EEEEeCCCCCCCCHHHHHHHHHhCC-CeEEEEcCHHHHhCCCCEEEEec
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASVIPF--HFVCACPKGFEPDKETVEKARKAGI-SKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~~g~-~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+.||+++|- ++|..+++..+...|. ++++.--..-......+|....... .++.++.+..+.+++||+|+.+.
T Consensus 5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIita 81 (315)
T PRK00066 5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITA 81 (315)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEec
Confidence 4689999996 8888888887777675 6777754333333333433222110 13444445567899999988864
No 133
>PRK10637 cysG siroheme synthase; Provisional
Probab=91.16 E-value=1.1 Score=43.57 Aligned_cols=70 Identities=9% Similarity=0.076 Sum_probs=50.4
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcC--HHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITND--PKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d--~~~a~~~aDviy~~~ 180 (261)
+++|++|.+||. ++|+--.+..+..+|.++++++|+ +.+++.+.+ +.| ++++... .++-++++++|+.-+
T Consensus 9 ~l~~~~vlvvGg-G~vA~rk~~~ll~~ga~v~visp~---~~~~~~~l~-~~~--~i~~~~~~~~~~dl~~~~lv~~at 80 (457)
T PRK10637 9 QLRDRDCLLVGG-GDVAERKARLLLDAGARLTVNALA---FIPQFTAWA-DAG--MLTLVEGPFDESLLDTCWLAIAAT 80 (457)
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCC---CCHHHHHHH-hCC--CEEEEeCCCChHHhCCCEEEEECC
Confidence 589999999996 788888888888899999999985 445554332 333 3443322 245689999988864
No 134
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=91.16 E-value=1.2 Score=41.36 Aligned_cols=67 Identities=25% Similarity=0.340 Sum_probs=45.7
Q ss_pred CCCCcEEEEEcCCC-chHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGN-NIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~-~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
-|+|+||++||-++ .-+|++-+ .=-|.++++.-.++ ....++|++.|. + .-+++||++.||||+...
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNL--RDSGlnViiGlr~g----~~s~~kA~~dGf---~-V~~v~ea~k~ADvim~L~ 82 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNL--RDSGLNVIIGLRKG----SSSWKKAKEDGF---K-VYTVEEAAKRADVVMILL 82 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhh--hhcCCcEEEEecCC----chhHHHHHhcCC---E-eecHHHHhhcCCEEEEeC
Confidence 38899999999853 25555433 33477776654433 223567888874 3 347899999999999874
No 135
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=91.13 E-value=0.32 Score=39.14 Aligned_cols=116 Identities=19% Similarity=0.203 Sum_probs=71.6
Q ss_pred HHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcE-EEEeCCCCCCCCHHHHHHHHHhCCC--eEEEEcCHHHHhCCCCE
Q 024871 99 IEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFH-FVCACPKGFEPDKETVEKARKAGIS--KIEITNDPKEVVQGADV 175 (261)
Q Consensus 99 ~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~-~~~~~P~~~~~~~~~~~~~~~~g~~--~i~~~~d~~~a~~~aDv 175 (261)
++.+++++|++++++|- +.++.+.+..+...|++ ++++.-. . +...+.+++.+.. .+.-.+++.+.++++|+
T Consensus 4 ~~~~~~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt-~---~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~Di 78 (135)
T PF01488_consen 4 KKKFGDLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRT-P---ERAEALAEEFGGVNIEAIPLEDLEEALQEADI 78 (135)
T ss_dssp CTHHSTGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESS-H---HHHHHHHHHHTGCSEEEEEGGGHCHHHHTESE
T ss_pred HHhcCCcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECC-H---HHHHHHHHHcCccccceeeHHHHHHHHhhCCe
Confidence 35678999999999996 67888888888888875 7777632 1 2222233344322 23345677788999999
Q ss_pred EEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCC--cEEeeCCCCCCCcccccccccCCCc
Q 024871 176 VYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPK--AYFMHCLPAERGVEVTEGVIEAPYS 238 (261)
Q Consensus 176 iy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~--~~~mH~lP~~rg~Ev~~~v~~~~~s 238 (261)
|+..+ +.+ .+.++++.++...+. .++==..|+ .|+.+|-+-|..
T Consensus 79 vI~aT--~~~-------------~~~i~~~~~~~~~~~~~~v~Dla~Pr----~i~~~v~~~~~v 124 (135)
T PF01488_consen 79 VINAT--PSG-------------MPIITEEMLKKASKKLRLVIDLAVPR----DIDPEVAELPGV 124 (135)
T ss_dssp EEE-S--STT-------------STSSTHHHHTTTCHHCSEEEES-SS-----SB-TTCGGSTTE
T ss_pred EEEec--CCC-------------CcccCHHHHHHHHhhhhceeccccCC----CCChhhcccCCe
Confidence 99975 112 246888888766542 333234784 335555554543
No 136
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=91.07 E-value=1.7 Score=41.69 Aligned_cols=76 Identities=18% Similarity=0.132 Sum_probs=52.3
Q ss_pred HHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCC-cEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEE
Q 024871 99 IEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIP-FHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVY 177 (261)
Q Consensus 99 ~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g-~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy 177 (261)
.+.+|.+.|.+|+++|- +.+....+..+...| .+++++.... +...+.+++.|. ...-.+++.+++.++|+|+
T Consensus 172 ~~~~~~l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~----~ra~~la~~~g~-~~i~~~~l~~~l~~aDvVi 245 (417)
T TIGR01035 172 ERIFGSLKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTY----ERAEDLAKELGG-EAVKFEDLEEYLAEADIVI 245 (417)
T ss_pred HHHhCCccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCH----HHHHHHHHHcCC-eEeeHHHHHHHHhhCCEEE
Confidence 35667899999999996 777777777777778 5777775532 112234455553 2222357788999999999
Q ss_pred Eec
Q 024871 178 SDV 180 (261)
Q Consensus 178 ~~~ 180 (261)
+.+
T Consensus 246 ~aT 248 (417)
T TIGR01035 246 SST 248 (417)
T ss_pred ECC
Confidence 975
No 137
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=90.96 E-value=4.9 Score=41.72 Aligned_cols=177 Identities=19% Similarity=0.168 Sum_probs=103.4
Q ss_pred CHHHHHHHHhhhc---cEEEEeeCCcch----HHHHhhhCCCcEEeCCCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEE
Q 024871 42 ETRDAARVLCRYN---DIIMARVFGHQD----ILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVG-RLEGTKVVYV 113 (261)
Q Consensus 42 s~~Dt~~~ls~~~---D~iv~R~~~~~~----~~~~a~~~~vPVINa~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~v 113 (261)
.+.+.+..+.... -.|-+-+.+... ++++-+...+||+| ++-+..-.-+|+=++.-.+..| +++..||++.
T Consensus 113 d~de~v~~v~~~~p~~g~i~~ED~~~p~~f~i~~~~~~~~~ip~f~-DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~ 191 (752)
T PRK07232 113 DPDKFIEAVAALEPTFGGINLEDIKAPECFYIEEKLRERMDIPVFH-DDQHGTAIISAAALLNALELVGKKIEDVKIVVS 191 (752)
T ss_pred CHHHHHHHHHHhCCCccEEeeeecCCchHHHHHHHHHHhcCCCeec-cccchHHHHHHHHHHHHHHHhCCChhhcEEEEE
Confidence 5677666666543 356665554433 34444556799999 3333444556777777777666 5999999999
Q ss_pred cCC-CchHHHHHHHHhcCCc---EEEEeCCCCCC-------CCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEeccc
Q 024871 114 GDG-NNIVHSWLLMASVIPF---HFVCACPKGFE-------PDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWA 182 (261)
Q Consensus 114 Gd~-~~v~~S~~~~~~~~g~---~~~~~~P~~~~-------~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~ 182 (261)
|-+ .++.-.-++. ..|+ +++++--+|+- +.+.-..+++..+ ..+++|+++++||++-.+-
T Consensus 192 GaGaag~~~a~~l~--~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~------~~~l~~~i~~~~v~iG~s~- 262 (752)
T PRK07232 192 GAGAAAIACLNLLV--ALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTD------ARTLAEAIEGADVFLGLSA- 262 (752)
T ss_pred CccHHHHHHHHHHH--HcCCCcccEEEEcCCCeecCCCcccccHHHHHHhccCC------CCCHHHHHcCCCEEEEcCC-
Confidence 986 3343332222 2455 66666544432 2222222333321 2489999999999998741
Q ss_pred CcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC-CCCCCCcccccc---------cccCCCcchHhHHhcc
Q 024871 183 SMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC-LPAERGVEVTEG---------VIEAPYSIVFPQAENR 247 (261)
Q Consensus 183 ~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~-lP~~rg~Ev~~~---------v~~~~~s~~~~Qa~N~ 247 (261)
+=-+|+++++...++.||+-+ -| -.|++.+ ++.+-+|-+=.|..|-
T Consensus 263 ----------------~g~~~~~~v~~M~~~piifalsNP---~~E~~p~~a~~~~~~~i~atGrs~~pnQ~NN~ 318 (752)
T PRK07232 263 ----------------AGVLTPEMVKSMADNPIIFALANP---DPEITPEEAKAVRPDAIIATGRSDYPNQVNNV 318 (752)
T ss_pred ----------------CCCCCHHHHHHhccCCEEEecCCC---CccCCHHHHHHhcCCEEEEECCcCCCCcccce
Confidence 124677777776667777654 22 1354433 4444455555566653
No 138
>PRK12862 malic enzyme; Reviewed
Probab=90.64 E-value=6.8 Score=40.78 Aligned_cols=152 Identities=18% Similarity=0.201 Sum_probs=90.3
Q ss_pred CHHHHHHHHhhhc---cEEEEeeCCcch----HHHHhhhCCCcEEeCCCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEE
Q 024871 42 ETRDAARVLCRYN---DIIMARVFGHQD----ILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVG-RLEGTKVVYV 113 (261)
Q Consensus 42 s~~Dt~~~ls~~~---D~iv~R~~~~~~----~~~~a~~~~vPVINa~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~v 113 (261)
...+.+..+.... -.|-+-+++... ++++-+...+||+| ++-+.--.-+|+=|+.-.+..| +++..||++.
T Consensus 121 d~d~~v~~v~~~~p~f~~i~~ED~~~~~~f~i~~~~~~~~~ip~f~-DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~ 199 (763)
T PRK12862 121 DPDKLVEIVAALEPTFGGINLEDIKAPECFYIERELRERMKIPVFH-DDQHGTAIIVAAALLNGLKLVGKDIEDVKLVAS 199 (763)
T ss_pred CHHHHHHHHHHhCCCcceeeeecccCchHHHHHHHHHhcCCCceEe-cCcccHHHHHHHHHHHHHHHhCCChhhcEEEEE
Confidence 4455555555442 345555554432 33444445799999 3323334456777777777766 5999999999
Q ss_pred cCC-CchHHHHHHHHhcCCc---EEEEeCCCCCC-------CCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEeccc
Q 024871 114 GDG-NNIVHSWLLMASVIPF---HFVCACPKGFE-------PDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWA 182 (261)
Q Consensus 114 Gd~-~~v~~S~~~~~~~~g~---~~~~~~P~~~~-------~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~ 182 (261)
|-+ .++.-.-++. ..|+ +++++--+|+- +.+.-..++++.+ ..+++|+++++||++-.+
T Consensus 200 GaGaag~~~a~~l~--~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~------~~~l~e~~~~~~v~iG~s-- 269 (763)
T PRK12862 200 GAGAAALACLDLLV--SLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKTD------ARTLAEVIEGADVFLGLS-- 269 (763)
T ss_pred ChhHHHHHHHHHHH--HcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhcc------cCCHHHHHcCCCEEEEcC--
Confidence 975 2333222222 2455 66666544431 2233333444432 248999999999999875
Q ss_pred CcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC
Q 024871 183 SMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC 219 (261)
Q Consensus 183 ~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~ 219 (261)
+ +=-+|+++++...++.||+-+
T Consensus 270 --~-------------~g~~~~~~v~~M~~~piifal 291 (763)
T PRK12862 270 --A-------------AGVLKPEMVKKMAPRPLIFAL 291 (763)
T ss_pred --C-------------CCCCCHHHHHHhccCCEEEeC
Confidence 1 123677888776677777764
No 139
>TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1. This is part of the trmH (spoU) family of S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases, and is now characterized, in E. coli, as a tRNA:Cm32/Um32 methyltransferase. It may be named TrMet(Xm32), or TrmJ, according to the nomenclature style chosen
Probab=90.57 E-value=1.4 Score=39.11 Aligned_cols=72 Identities=24% Similarity=0.337 Sum_probs=50.6
Q ss_pred CCCcEEEEEcC--CCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHHhC----CCeEEEEcCHHHHhCCCCEEE
Q 024871 105 LEGTKVVYVGD--GNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARKAG----ISKIEITNDPKEVVQGADVVY 177 (261)
Q Consensus 105 l~~~~i~~vGd--~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~g----~~~i~~~~d~~~a~~~aDviy 177 (261)
|...+|+.++. +.|+. +.+..+..||+ +++++.|... +.++....+ .| ....++++++++++++++.++
T Consensus 1 ~~~i~vvL~~~~~p~NiG-aiaR~~~~fG~~~l~lv~p~~~-~~~~a~~~a--~ga~~~l~~~~v~~~l~eal~~~~~vv 76 (233)
T TIGR00050 1 LENIRIVLVEPSHSGNIG-SIARAMKNMGLTELCLVNPKSH-LEEEAYALA--AGARDILDNAKVVDDLDEALDDCDLVV 76 (233)
T ss_pred CCCeEEEEECCCCCCCHH-HHHHHHHhCCCCEEEEeCCCcC-CCHHHHHHh--CChHHhhccCEEECCHHHHHhcCCEEE
Confidence 34578889884 46654 56778888997 8888988776 555544322 22 134467889999999999877
Q ss_pred Eec
Q 024871 178 SDV 180 (261)
Q Consensus 178 ~~~ 180 (261)
.+.
T Consensus 77 ~tt 79 (233)
T TIGR00050 77 GTS 79 (233)
T ss_pred EEC
Confidence 654
No 140
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=90.55 E-value=1.1 Score=40.89 Aligned_cols=141 Identities=19% Similarity=0.122 Sum_probs=87.9
Q ss_pred HHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcch------HHHHhhhC---CCcEEeCC-
Q 024871 15 SFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQD------ILDLAKFA---TVPVINGL- 82 (261)
Q Consensus 15 SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~------~~~~a~~~---~vPVINa~- 82 (261)
+=..+++..|......+-... ...|.+.+.+.-+..= .|.|++--+-..- ++.+...- +.--.|.+
T Consensus 50 ~K~k~~~~iGi~~~~~~l~~~--~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~ 127 (283)
T COG0190 50 SKKKAAEEIGIASELYDLPED--ITEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGK 127 (283)
T ss_pred HHHHHHHHcCCeeEEEeCCCc--CCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcc
Confidence 345688899998776542211 1133344444444332 5788887653322 22222111 11124521
Q ss_pred ----CCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC
Q 024871 83 ----TDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI 157 (261)
Q Consensus 83 ----~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~ 157 (261)
-...+||-..+ +++|.|+++ +++|+++++||-.+-|.+=+..++..-+.++++|.-
T Consensus 128 L~~~~~~~~PCTp~g-i~~ll~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs------------------ 188 (283)
T COG0190 128 LAQGEPGFLPCTPAG-IMTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHS------------------ 188 (283)
T ss_pred hhcCCCCCCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcC------------------
Confidence 13467887765 567777776 699999999998777888887777778899988842
Q ss_pred CeEEEEcCHHHHhCCCCEEEEec
Q 024871 158 SKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 158 ~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+.|+.+..++||+|++-.
T Consensus 189 ----~T~~l~~~~k~ADIvv~Av 207 (283)
T COG0190 189 ----RTKDLASITKNADIVVVAV 207 (283)
T ss_pred ----CCCCHHHHhhhCCEEEEec
Confidence 2467888899999998864
No 141
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=90.34 E-value=4.3 Score=34.81 Aligned_cols=38 Identities=18% Similarity=0.157 Sum_probs=29.4
Q ss_pred CCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCCc
Q 024871 172 GADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERGV 226 (261)
Q Consensus 172 ~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg~ 226 (261)
++|++..-.| .+.+.+++++..+..++=+|| ||.+||.
T Consensus 79 ~~D~iv~~~~-----------------~~il~~~~l~~~~~~~iNiHpslLP~yrG~ 118 (190)
T TIGR00639 79 EVDLVVLAGF-----------------MRILGPTFLSRFAGRILNIHPSLLPAFPGL 118 (190)
T ss_pred CCCEEEEeCc-----------------chhCCHHHHhhccCCEEEEeCCcccCCCCc
Confidence 5888888754 245778888877778999999 8998863
No 142
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.24 E-value=1.8 Score=40.34 Aligned_cols=72 Identities=14% Similarity=0.177 Sum_probs=48.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCH--H----HHHHHHHhC------CCeEEEEcCHHHHhCCCCE
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDK--E----TVEKARKAG------ISKIEITNDPKEVVQGADV 175 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~--~----~~~~~~~~g------~~~i~~~~d~~~a~~~aDv 175 (261)
+||++||- +-+..+|+..++..|.+|++.-|..-.... . .++.+.+.| .+.++.++++++++++||+
T Consensus 8 ~~VaVIGa-G~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl 86 (321)
T PRK07066 8 KTFAAIGS-GVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF 86 (321)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence 68999995 778999999888889998877663211100 0 011111121 1356778899999999999
Q ss_pred EEEec
Q 024871 176 VYSDV 180 (261)
Q Consensus 176 iy~~~ 180 (261)
|+--.
T Consensus 87 ViEav 91 (321)
T PRK07066 87 IQESA 91 (321)
T ss_pred EEECC
Confidence 99864
No 143
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=90.16 E-value=1.4 Score=32.62 Aligned_cols=65 Identities=23% Similarity=0.243 Sum_probs=44.5
Q ss_pred EEEEEcCCCchHHHHHHHHhcCC---cEEEEeCCCCCCCCHHHHHH-HHHhCCCeEEEEc-CHHHHhCCCCEEEEecc
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIP---FHFVCACPKGFEPDKETVEK-ARKAGISKIEITN-DPKEVVQGADVVYSDVW 181 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g---~~~~~~~P~~~~~~~~~~~~-~~~~g~~~i~~~~-d~~~a~~~aDviy~~~w 181 (261)
||+++|- +|+..+++..+..-| .++.+++. ..++..+. +++.+ +..+. +..++++++|+|.....
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~----r~~~~~~~~~~~~~---~~~~~~~~~~~~~~advvilav~ 70 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSS----RSPEKAAELAKEYG---VQATADDNEEAAQEADVVILAVK 70 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEE----SSHHHHHHHHHHCT---TEEESEEHHHHHHHTSEEEE-S-
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCceeEEeecc----CcHHHHHHHHHhhc---cccccCChHHhhccCCEEEEEEC
Confidence 7899985 889999998887777 78886632 22333333 34454 23344 78999999999999764
No 144
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=90.14 E-value=0.96 Score=36.44 Aligned_cols=98 Identities=16% Similarity=0.173 Sum_probs=50.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH-hCCCeEEEEcCHHHHhCCCCEEEEecccCc
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK-AGISKIEITNDPKEVVQGADVVYSDVWASM 184 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~-~g~~~i~~~~d~~~a~~~aDviy~~~w~~~ 184 (261)
..+||++||. +||...|..++..-|.++..+.-. ...-.+++.. .+ ... ..++++.++++|++....
T Consensus 9 ~~l~I~iIGa-GrVG~~La~aL~~ag~~v~~v~sr----s~~sa~~a~~~~~--~~~-~~~~~~~~~~aDlv~iav---- 76 (127)
T PF10727_consen 9 ARLKIGIIGA-GRVGTALARALARAGHEVVGVYSR----SPASAERAAAFIG--AGA-ILDLEEILRDADLVFIAV---- 76 (127)
T ss_dssp ---EEEEECT-SCCCCHHHHHHHHTTSEEEEESSC----HH-HHHHHHC--T--T------TTGGGCC-SEEEE-S----
T ss_pred CccEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeC----Ccccccccccccc--ccc-ccccccccccCCEEEEEe----
Confidence 3589999997 788888888888889887765422 2222233332 22 223 346788999999998864
Q ss_pred chhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCC
Q 024871 185 GQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAE 223 (261)
Q Consensus 185 ~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~ 223 (261)
.+. .-....+.+..+. ..+++.+|.||=.+.
T Consensus 77 pDd-aI~~va~~La~~~-------~~~~g~iVvHtSGa~ 107 (127)
T PF10727_consen 77 PDD-AIAEVAEQLAQYG-------AWRPGQIVVHTSGAL 107 (127)
T ss_dssp -CC-HHHHHHHHHHCC---------S-TT-EEEES-SS-
T ss_pred chH-HHHHHHHHHHHhc-------cCCCCcEEEECCCCC
Confidence 221 1111112222221 135678999997763
No 145
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=89.87 E-value=2.9 Score=37.48 Aligned_cols=86 Identities=26% Similarity=0.466 Sum_probs=46.4
Q ss_pred CChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHH----HHHhCCCeEE
Q 024871 86 NHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEK----ARKAGISKIE 161 (261)
Q Consensus 86 ~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~----~~~~g~~~i~ 161 (261)
--|--++.=..-|.++ |+|+|++|.++||.. .-|++.++...+.++++. .+++.+++. +++.|.. |+
T Consensus 25 ~T~eT~~~Ra~~~~~~-gdL~gk~il~lGDDD--LtSlA~al~~~~~~I~Vv-----DiDeRll~fI~~~a~~~gl~-i~ 95 (243)
T PF01861_consen 25 ATPETTLRRAALMAER-GDLEGKRILFLGDDD--LTSLALALTGLPKRITVV-----DIDERLLDFINRVAEEEGLP-IE 95 (243)
T ss_dssp B-HHHHHHHHHHHHHT-T-STT-EEEEES-TT---HHHHHHHHT--SEEEEE------S-HHHHHHHHHHHHHHT---EE
T ss_pred ccHHHHHHHHHHHHhc-CcccCCEEEEEcCCc--HHHHHHHhhCCCCeEEEE-----EcCHHHHHHHHHHHHHcCCc-eE
Confidence 3455555555555554 789999999999854 346666666777777765 467777665 4455643 44
Q ss_pred -EEcCH-----HHHhCCCCEEEEec
Q 024871 162 -ITNDP-----KEVVQGADVVYSDV 180 (261)
Q Consensus 162 -~~~d~-----~~a~~~aDviy~~~ 180 (261)
...|+ ++.....|+++||+
T Consensus 96 ~~~~DlR~~LP~~~~~~fD~f~TDP 120 (243)
T PF01861_consen 96 AVHYDLRDPLPEELRGKFDVFFTDP 120 (243)
T ss_dssp EE---TTS---TTTSS-BSEEEE--
T ss_pred EEEecccccCCHHHhcCCCEEEeCC
Confidence 23443 45567889999996
No 146
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=89.81 E-value=14 Score=33.55 Aligned_cols=170 Identities=10% Similarity=-0.042 Sum_probs=90.5
Q ss_pred ChhhHHHHHHHHHhcCCeEEEeCCCCcCC-CCCCCHHHHHHHHhhh-ccEEEEeeCCcchHH-------HHhhhCCC--c
Q 024871 9 SMRTRVSFETGFSLLGGHAIYLGPDDIQM-GKREETRDAARVLCRY-NDIIMARVFGHQDIL-------DLAKFATV--P 77 (261)
Q Consensus 9 StRTR~SFe~A~~~LGg~~~~l~~~~s~~-~kgEs~~Dt~~~ls~~-~D~iv~R~~~~~~~~-------~~a~~~~v--P 77 (261)
.++.-.=+..++..+|....|..-..... -..|.+.+..+.+... ...+-+=.+--..+. +.|+..+. -
T Consensus 17 hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~~D~~~~~A~~iGAvNT 96 (284)
T PRK12549 17 ASLSPAMHEAEGDAQGLRYVYRLIDLDALGLTADALPELLDAAERMGFAGLNITHPCKQAVIPHLDELSDDARALGAVNT 96 (284)
T ss_pred cccCHHHHHHHHHHcCCCeEEEEEeeccccCCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhccCCHHHHHhCCceE
Confidence 44555567788999999988763321000 0235677777666443 344444333222222 22222211 1
Q ss_pred EEeCCC-CCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHHh
Q 024871 78 VINGLT-DYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 78 VINa~~-~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
|++-.+ -..|=|-...=+..+++....+++++++++|- +.++++.+..+...|+ +++++.... .-.+.+.+.+.+.
T Consensus 97 v~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~-~ka~~la~~l~~~ 174 (284)
T PRK12549 97 VVFRDGRRIGHNTDWSGFAESFRRGLPDASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDP-ARAAALADELNAR 174 (284)
T ss_pred EEecCCEEEEEcCCHHHHHHHHHhhccCccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCH-HHHHHHHHHHHhh
Confidence 344222 22343433333333444334688999999996 6688888888888887 677775421 1112222222221
Q ss_pred -CCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 156 -GISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 156 -g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+...+...++..+.++++|+|+..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~aDiVInaT 200 (284)
T PRK12549 175 FPAARATAGSDLAAALAAADGLVHAT 200 (284)
T ss_pred CCCeEEEeccchHhhhCCCCEEEECC
Confidence 1112333345667889999998875
No 147
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=89.69 E-value=2.2 Score=40.20 Aligned_cols=156 Identities=15% Similarity=0.173 Sum_probs=91.3
Q ss_pred CCCHHHHHHHHhhhccEEEEeeCCcchHH------------------------HHhhhCCCcEEeCCC-C-CCChhHHHH
Q 024871 40 REETRDAARVLCRYNDIIMARVFGHQDIL------------------------DLAKFATVPVINGLT-D-YNHPCQIMA 93 (261)
Q Consensus 40 gEs~~Dt~~~ls~~~D~iv~R~~~~~~~~------------------------~~a~~~~vPVINa~~-~-~~HPtQ~L~ 93 (261)
.-+++|+..-+ .-+|++++|....-..+ .+|..-+|-|+|.-+ + ..----.+.
T Consensus 35 ~~~~eel~~~i-~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltig 113 (406)
T KOG0068|consen 35 NLSLEELIEKI-KDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVDLKAATENGILVVNTPTANSRSAAELTIG 113 (406)
T ss_pred cCCHHHHHHHh-ccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccccChhhHHhCCeEEEeCCCCChHHHHHHHHH
Confidence 44556665543 34799999986542222 223334567888632 2 221222233
Q ss_pred HHHHHHHHh------------------C-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH
Q 024871 94 DALTIIEHV------------------G-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK 154 (261)
Q Consensus 94 Dl~Ti~e~~------------------g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~ 154 (261)
-++.|.++. | .+.|++++++|= +++..-.+..+..+|++++..-| +.|. +.++.
T Consensus 114 li~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~-GrIGseVA~r~k~~gm~vI~~dp--i~~~----~~~~a 186 (406)
T KOG0068|consen 114 LILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGL-GRIGSEVAVRAKAMGMHVIGYDP--ITPM----ALAEA 186 (406)
T ss_pred HHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeec-ccchHHHHHHHHhcCceEEeecC--CCch----HHHHh
Confidence 344443321 1 368899999994 67777777788889999887766 3333 23555
Q ss_pred hCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC
Q 024871 155 AGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC 219 (261)
Q Consensus 155 ~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~ 219 (261)
.| +++. +++|++..||+|-.-. +.....+ --++++.++.+|+.+.+..+
T Consensus 187 ~g---vq~v-sl~Eil~~ADFitlH~--PLtP~T~----------~lin~~tfA~mKkGVriIN~ 235 (406)
T KOG0068|consen 187 FG---VQLV-SLEEILPKADFITLHV--PLTPSTE----------KLLNDETFAKMKKGVRIINV 235 (406)
T ss_pred cc---ceee-eHHHHHhhcCEEEEcc--CCCcchh----------hccCHHHHHHhhCCcEEEEe
Confidence 66 3443 6899999999997743 1111111 22566666666666666653
No 148
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=89.57 E-value=2.7 Score=36.71 Aligned_cols=72 Identities=22% Similarity=0.184 Sum_probs=49.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+++|++|++||. +.|+-=.+..+...|.++++++|.- .+++..+.++.+..-++-.-+. +-+.+++.|++.+
T Consensus 9 ~l~~k~VlvvGg-G~va~rKa~~ll~~ga~v~Vvs~~~---~~el~~~~~~~~i~~~~~~~~~-~~~~~~~lviaAt 80 (210)
T COG1648 9 DLEGKKVLVVGG-GSVALRKARLLLKAGADVTVVSPEF---EPELKALIEEGKIKWIEREFDA-EDLDDAFLVIAAT 80 (210)
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHhcCCEEEEEcCCc---cHHHHHHHHhcCcchhhcccCh-hhhcCceEEEEeC
Confidence 589999999996 6677778888889999999999965 5566555555442222212222 3355688888865
No 149
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=89.52 E-value=2.1 Score=39.73 Aligned_cols=74 Identities=23% Similarity=0.243 Sum_probs=46.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHH---hC-CCeEEEEcCHHHHhCCCCEEEEe
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARK---AG-ISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~---~g-~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
++..||+++| .+++..+.+..++.-|. ++++.-...-....+.++.... .+ ..+++.+.|. +++++||+|+.+
T Consensus 4 ~~~~KI~IIG-aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~t 81 (321)
T PTZ00082 4 IKRRKISLIG-SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVT 81 (321)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEEC
Confidence 4568999999 57788888777766664 6666654332222333433322 12 1356655676 589999999985
Q ss_pred c
Q 024871 180 V 180 (261)
Q Consensus 180 ~ 180 (261)
.
T Consensus 82 a 82 (321)
T PTZ00082 82 A 82 (321)
T ss_pred C
Confidence 3
No 150
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=89.49 E-value=14 Score=36.10 Aligned_cols=163 Identities=15% Similarity=0.053 Sum_probs=93.8
Q ss_pred HHHHhcCCeEEEe-CCC---------CcCC-CCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCC-CC
Q 024871 18 TGFSLLGGHAIYL-GPD---------DIQM-GKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLT-DY 85 (261)
Q Consensus 18 ~A~~~LGg~~~~l-~~~---------~s~~-~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~-~~ 85 (261)
.=...+|.++..+ +.+ -+.+ ..|-|++|..+.=++-..+++-+.......+.+.+.-++|-++... -.
T Consensus 189 ~lL~~~Gl~v~~l~d~~s~d~~~~~~~~~~~~gg~tleei~~~~~A~lniv~~~~~g~~~A~~Lee~~giP~~~~~~piG 268 (461)
T TIGR02931 189 HLLEEMDIEANVLFEIESFDSPLMPDKSAVSHGSTTIEDLTDTANAKGTIALNRYEGMKAADYLQKKFDVPAIIGPTPIG 268 (461)
T ss_pred HHHHHcCCceEEeeccccccCCCCCcccccCCCCCcHHHHHhhccCcEEEEEcHhhHHHHHHHHHHHhCCCeeccCCCcc
Confidence 3456789998754 321 1111 2367899988877777777776655566677888888999887532 22
Q ss_pred CChh----HHHHHHHH------HH-H---------H-h-CCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEe-CCCCC
Q 024871 86 NHPC----QIMADALT------II-E---------H-V-GRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCA-CPKGF 142 (261)
Q Consensus 86 ~HPt----Q~L~Dl~T------i~-e---------~-~-g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~-~P~~~ 142 (261)
-+.| +.|++++- +. | . . ..+.|+|+++.||. ..+.++...+.-+|+.+..+ ++...
T Consensus 269 i~~T~~fl~~l~~~~g~~~~e~i~~er~~~~~~~~d~~~~~l~Gkrvai~~~~-~~~~~l~~~l~elGm~~~~~~~~~~~ 347 (461)
T TIGR02931 269 IRNTDTFLQNLKKMTGKPIPESLVKERGIAIDAIADLTHMFLADKRVAIYGNP-DLVIGLAEFCLDLEMKPVLLLLGDDN 347 (461)
T ss_pred hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhhhHHhCCCeEEEEeCH-HHHHHHHHHHHHCCCEEEEEEECCCC
Confidence 3333 33333321 11 1 0 0 13789999999984 44666776666789877643 33211
Q ss_pred --CCCHHHHHHHHHh-C-CCeEEEEcCHH---HHhC----CCCEEEEecc
Q 024871 143 --EPDKETVEKARKA-G-ISKIEITNDPK---EVVQ----GADVVYSDVW 181 (261)
Q Consensus 143 --~~~~~~~~~~~~~-g-~~~i~~~~d~~---~a~~----~aDviy~~~w 181 (261)
..+.+.+++..+. + ...+....|+. +.++ +.|+++...|
T Consensus 348 ~~~~~~~~~~~l~~~~~~~~~vv~~~d~~~l~~~i~~~~~~~Dliig~s~ 397 (461)
T TIGR02931 348 SGYVDDPRIKALQENVDYDMEIVTNADFWELESRIKNQGLELDLILGHSK 397 (461)
T ss_pred cccchhHHHHHHHhhCCCCceEEeCCCHHHHHHHHHhcCCCCCEEEECcc
Confidence 1223344443322 1 13344444543 4455 5888888764
No 151
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=89.38 E-value=9.2 Score=36.68 Aligned_cols=167 Identities=14% Similarity=0.099 Sum_probs=94.4
Q ss_pred HHHHHHHHhcCCeEEEeC-CCC---cCC--------CCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeC
Q 024871 14 VSFETGFSLLGGHAIYLG-PDD---IQM--------GKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVING 81 (261)
Q Consensus 14 ~SFe~A~~~LGg~~~~l~-~~~---s~~--------~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa 81 (261)
.-...=...+|.++..+- .++ .++ ..|-|++|..+.=++-..+++-+.......+.+.+.-++|-+..
T Consensus 172 ~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~e~i~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP~~~~ 251 (428)
T cd01965 172 REIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTLEEIRDAGNAKATIALGEYSGRKAAKALEEKFGVPYILF 251 (428)
T ss_pred HHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCCCcHHHHHHhccCcEEEEEChhhhHHHHHHHHHHHCCCeeec
Confidence 334445668899987653 211 111 24789999888777777776555455667777888889998875
Q ss_pred CC-CCCCh----hHHHHHHHH------HH-----------HHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeC-
Q 024871 82 LT-DYNHP----CQIMADALT------II-----------EHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCAC- 138 (261)
Q Consensus 82 ~~-~~~HP----tQ~L~Dl~T------i~-----------e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~- 138 (261)
.. -+-+. .+.|++++- +. +.+..++|+|+++.||.. .+.+++..+.-+|+++..+.
T Consensus 252 ~~p~G~~~t~~~l~~l~~~~g~~~~~~~~~~r~~~~~~~~~~~~~l~gk~v~i~~~~~-~~~~l~~~L~e~G~~v~~v~~ 330 (428)
T cd01965 252 PTPIGLKATDEFLRALSKLSGKPIPEELERERGRLLDAMLDSHFYLGGKRVAIAGDPD-LLLGLSRFLLEMGAEPVAAVT 330 (428)
T ss_pred CCCcChHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcChH-HHHHHHHHHHHcCCcceEEEE
Confidence 32 11222 233334321 11 111247899999999854 56778877878888766433
Q ss_pred CCCCCCCHHHHHHHHH-hCC-CeEEEEcCH---HHHhCC--CCEEEEecc
Q 024871 139 PKGFEPDKETVEKARK-AGI-SKIEITNDP---KEVVQG--ADVVYSDVW 181 (261)
Q Consensus 139 P~~~~~~~~~~~~~~~-~g~-~~i~~~~d~---~~a~~~--aDviy~~~w 181 (261)
+.......+-++...+ .+. ..+....|. ++.+++ .|+|+.+.+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~el~~~i~~~~pdliig~~~ 380 (428)
T cd01965 331 GTDNPPFEKRMELLASLEGIPAEVVFVGDLWDLESLAKEEPVDLLIGNSH 380 (428)
T ss_pred cCCCchhHHHHHHhhhhcCCCceEEECCCHHHHHHHhhccCCCEEEECch
Confidence 3222221221111111 121 234444454 345655 899998864
No 152
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=89.30 E-value=1.7 Score=41.65 Aligned_cols=76 Identities=21% Similarity=0.417 Sum_probs=52.8
Q ss_pred HHHHhCCCCCcEEEEEcCC-----CchH----HHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHH
Q 024871 98 IIEHVGRLEGTKVVYVGDG-----NNIV----HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKE 168 (261)
Q Consensus 98 i~e~~g~l~~~~i~~vGd~-----~~v~----~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~ 168 (261)
|.++++ ++|++|++.|=. .++. -.++..+...|.++...-|... +.++... ..+.+.+|+++
T Consensus 302 i~~~~~-l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~-------~~~~~~~-~~~~~~~~~~~ 372 (414)
T COG1004 302 ILNHLG-LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAM-------ENAFRNF-PDVELESDAEE 372 (414)
T ss_pred HHHhcC-CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhh-------HHHHhcC-CCceEeCCHHH
Confidence 345667 999999999931 2333 3356777788999987777442 2222222 35788999999
Q ss_pred HhCCCCEEEEec-cc
Q 024871 169 VVQGADVVYSDV-WA 182 (261)
Q Consensus 169 a~~~aDviy~~~-w~ 182 (261)
++++||+|...+ |.
T Consensus 373 ~~~~aDaivi~tew~ 387 (414)
T COG1004 373 ALKGADAIVINTEWD 387 (414)
T ss_pred HHhhCCEEEEeccHH
Confidence 999999988754 64
No 153
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=89.26 E-value=3.8 Score=39.51 Aligned_cols=104 Identities=9% Similarity=0.171 Sum_probs=63.8
Q ss_pred HHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEE
Q 024871 99 IEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVY 177 (261)
Q Consensus 99 ~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy 177 (261)
.+.++++.|+|++++|- +.++...+..+...|. +++++.-. . +...+.+.+.+.......+++.+.+.++|+|+
T Consensus 173 ~~~~~~l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt-~---~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI 247 (414)
T PRK13940 173 KRQLDNISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRT-I---EKAQKITSAFRNASAHYLSELPQLIKKADIII 247 (414)
T ss_pred HHHhcCccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCC-H---HHHHHHHHHhcCCeEecHHHHHHHhccCCEEE
Confidence 45678899999999997 5566665555556674 67777543 1 12222344444123333467788999999999
Q ss_pred EecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCC
Q 024871 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAE 223 (261)
Q Consensus 178 ~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~ 223 (261)
..+ +. ..|.|+.+.++ .+|-.+|==.+|++
T Consensus 248 ~aT----~a-----------~~~vi~~~~~~-~~~~~~iDLavPRd 277 (414)
T PRK13940 248 AAV----NV-----------LEYIVTCKYVG-DKPRVFIDISIPQA 277 (414)
T ss_pred ECc----CC-----------CCeeECHHHhC-CCCeEEEEeCCCCC
Confidence 975 22 13667766653 23434444567853
No 154
>PRK04148 hypothetical protein; Provisional
Probab=89.24 E-value=3.5 Score=33.59 Aligned_cols=78 Identities=24% Similarity=0.307 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCH----H
Q 024871 92 MADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDP----K 167 (261)
Q Consensus 92 L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~----~ 167 (261)
+++. |.++.+..++++++-||-+. ..+.+..++..|.+++.+ ..++..++.+++.+. .+. ..|+ .
T Consensus 4 i~~~--l~~~~~~~~~~kileIG~Gf--G~~vA~~L~~~G~~ViaI-----Di~~~aV~~a~~~~~-~~v-~dDlf~p~~ 72 (134)
T PRK04148 4 IAEF--IAENYEKGKNKKIVELGIGF--YFKVAKKLKESGFDVIVI-----DINEKAVEKAKKLGL-NAF-VDDLFNPNL 72 (134)
T ss_pred HHHH--HHHhcccccCCEEEEEEecC--CHHHHHHHHHCCCEEEEE-----ECCHHHHHHHHHhCC-eEE-ECcCCCCCH
Confidence 4444 55666666789999999763 333444555678887755 344556777887763 222 2332 4
Q ss_pred HHhCCCCEEEEec
Q 024871 168 EVVQGADVVYSDV 180 (261)
Q Consensus 168 ~a~~~aDviy~~~ 180 (261)
+.-++||+||.-+
T Consensus 73 ~~y~~a~liysir 85 (134)
T PRK04148 73 EIYKNAKLIYSIR 85 (134)
T ss_pred HHHhcCCEEEEeC
Confidence 5689999999987
No 155
>PRK06141 ornithine cyclodeaminase; Validated
Probab=89.23 E-value=1.8 Score=39.90 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=48.5
Q ss_pred HHhCCCCCcEEEEEcCCCchHHHHHHHH-hcCC-cEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEE
Q 024871 100 EHVGRLEGTKVVYVGDGNNIVHSWLLMA-SVIP-FHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVY 177 (261)
Q Consensus 100 e~~g~l~~~~i~~vGd~~~v~~S~~~~~-~~~g-~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy 177 (261)
+.+...+.++|+++|- +..++..+..+ ...+ .++++.... ..-.+.+.+..++.| ..+...+++++++++||+|+
T Consensus 118 ~~La~~~~~~v~iiG~-G~~a~~~~~al~~~~~~~~V~V~~Rs-~~~a~~~a~~~~~~g-~~~~~~~~~~~av~~aDIVi 194 (314)
T PRK06141 118 SYLARKDASRLLVVGT-GRLASLLALAHASVRPIKQVRVWGRD-PAKAEALAAELRAQG-FDAEVVTDLEAAVRQADIIS 194 (314)
T ss_pred HHhCCCCCceEEEECC-cHHHHHHHHHHHhcCCCCEEEEEcCC-HHHHHHHHHHHHhcC-CceEEeCCHHHHHhcCCEEE
Confidence 3466678899999996 55555555432 2345 467666542 222223333333334 24667889999999999998
Q ss_pred Eec
Q 024871 178 SDV 180 (261)
Q Consensus 178 ~~~ 180 (261)
+.+
T Consensus 195 ~aT 197 (314)
T PRK06141 195 CAT 197 (314)
T ss_pred Eee
Confidence 865
No 156
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.18 E-value=3.3 Score=38.35 Aligned_cols=71 Identities=18% Similarity=0.173 Sum_probs=45.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCC--cEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEE---cCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIP--FHFVCACPKGFEPDKETVEKARKAGISKIEIT---NDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g--~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~---~d~~~a~~~aDviy~~~ 180 (261)
.||+++|..++|..+++..+..-+ -+++++-.+ ....+.+|........++.-+ +|+.++++|+|+|+.+.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvita 76 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPA 76 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeC
Confidence 489999976889999888776655 478777665 333333333222111245432 34678999999988764
No 157
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=89.18 E-value=12 Score=36.27 Aligned_cols=153 Identities=12% Similarity=0.132 Sum_probs=81.0
Q ss_pred HHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChh----HHHHHH
Q 024871 20 FSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPC----QIMADA 95 (261)
Q Consensus 20 ~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPt----Q~L~Dl 95 (261)
...+|.++... +..|-|++|..++=++-..+++.+.......+.+.+.-++|.+....-.-+.| +.|+++
T Consensus 213 L~~~Gl~v~~~------~~~~~t~eei~~~~~A~lniv~~~~~~~~~A~~L~er~GiP~~~~~p~G~~~t~~~l~~la~~ 286 (443)
T TIGR01862 213 LEEMGIQVVAT------FTGDGTYDEIRLMHKAKLNLVHCARSANYIANELEERYGIPWMKIDFFGFTYTAESLRAIAAF 286 (443)
T ss_pred HHHcCCeEEEE------ECCCCCHHHHHhcccCCEEEEEChHHHHHHHHHHHHHhCCCeEecccCCHHHHHHHHHHHHHH
Confidence 44556665431 12356677776655555565444433344566777778999888542122222 333333
Q ss_pred HHH--------HH-----------HhCCCCCcEEEEEcCCCchHHHHHH-HHhcCCcEEEEeCCCCCCCCHHHHHHHHHh
Q 024871 96 LTI--------IE-----------HVGRLEGTKVVYVGDGNNIVHSWLL-MASVIPFHFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 96 ~Ti--------~e-----------~~g~l~~~~i~~vGd~~~v~~S~~~-~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
+-+ .+ ....|.|+|+++.++..+. .+++. ++.-+|+++..+..+. .-.+++.+..+..
T Consensus 287 ~gi~~~~e~~i~~~~~~~~~~l~~~~~~l~gkrvai~~~~~~~-~~~~~~ll~elGm~v~~~~~~~-~~~~~~~~~l~~l 364 (443)
T TIGR01862 287 FGIEKRAEEVIAEEKAKWKPELDYYKERLQGKRVCLYIGGSRL-WHWIGSAEEDLGMEVVAVGYEF-AHEDDYEKTMKRM 364 (443)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCchhH-HHHHHHHHHHCCCEEEEecccc-ccHHHHHHHHHhC
Confidence 321 11 1134789999998775443 36766 7777999988775432 1122333333333
Q ss_pred CCCeEEEEcCH--HH---Hh--CCCCEEEEecc
Q 024871 156 GISKIEITNDP--KE---VV--QGADVVYSDVW 181 (261)
Q Consensus 156 g~~~i~~~~d~--~~---a~--~~aDviy~~~w 181 (261)
+...+. ..|. .+ .+ .+.|+|+...|
T Consensus 365 ~~~~~~-v~~~~~~e~~~~i~~~~pdllig~s~ 396 (443)
T TIGR01862 365 GEGTLL-IDDPNELEFEEILEKLKPDIIFSGIK 396 (443)
T ss_pred CCceEE-ecCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 322233 3332 22 22 25788888754
No 158
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=89.06 E-value=1.9 Score=40.04 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=47.4
Q ss_pred HhCCCCCcEEEEEcCCCchHHHHHHHHh-cCCc-EEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEE
Q 024871 101 HVGRLEGTKVVYVGDGNNIVHSWLLMAS-VIPF-HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYS 178 (261)
Q Consensus 101 ~~g~l~~~~i~~vGd~~~v~~S~~~~~~-~~g~-~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~ 178 (261)
++..-+-.+++++|- ++.++..++++. ..+. ++.+..+.. +-.+.+.++.++.| ..+...+|.+++++++|||++
T Consensus 122 ~La~~~~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~-~~~~~~~~~~~~~g-~~v~~~~~~~eav~~aDiVit 198 (325)
T TIGR02371 122 YLARKDSSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTP-STREKFALRASDYE-VPVRAATDPREAVEGCDILVT 198 (325)
T ss_pred HhCCCCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCH-HHHHHHHHHHHhhC-CcEEEeCCHHHHhccCCEEEE
Confidence 344456689999997 455655544432 3443 555554422 11123333344455 357778999999999999998
Q ss_pred ec
Q 024871 179 DV 180 (261)
Q Consensus 179 ~~ 180 (261)
-+
T Consensus 199 aT 200 (325)
T TIGR02371 199 TT 200 (325)
T ss_pred ec
Confidence 65
No 159
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=88.97 E-value=3.7 Score=41.67 Aligned_cols=100 Identities=18% Similarity=0.168 Sum_probs=59.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEE--EeCCCC---CCCCHHHHHHHHHhCCCeEEEEcCH-----HHHh--CCCCE
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFV--CACPKG---FEPDKETVEKARKAGISKIEITNDP-----KEVV--QGADV 175 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~--~~~P~~---~~~~~~~~~~~~~~g~~~i~~~~d~-----~~a~--~~aDv 175 (261)
.||+|+|...--+.++-.+. .-|.+++ +..|+. -.....+.+.|+++|+..++ ..++ .+.+ .+.|+
T Consensus 1 mkivf~g~~~~a~~~l~~L~-~~~~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~-~~~~~~~~~~~~l~~~~~D~ 78 (660)
T PRK08125 1 MKAVVFAYHDIGCVGIEALL-AAGYEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYA-PEDVNHPLWVERIRELAPDV 78 (660)
T ss_pred CeEEEECCCHHHHHHHHHHH-HCCCcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEe-eCCCCcHHHHHHHHhcCCCE
Confidence 48999996433333333232 2355544 333543 11122466778888864333 2332 1223 36788
Q ss_pred EEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCCc
Q 024871 176 VYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERGV 226 (261)
Q Consensus 176 iy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg~ 226 (261)
+++-.| .+.|.+++++..+-.++-+|| ||.+||.
T Consensus 79 iv~~~~-----------------~~ii~~~il~~~~~g~iN~H~slLP~yRG~ 114 (660)
T PRK08125 79 IFSFYY-----------------RNLLSDEILQLAPAGAFNLHGSLLPKYRGR 114 (660)
T ss_pred EEEccc-----------------cccCCHHHHhhcCCCEEEEeCCcccCCCCc
Confidence 887654 245888899888888999999 8998853
No 160
>PRK08291 ectoine utilization protein EutC; Validated
Probab=88.62 E-value=2.8 Score=38.92 Aligned_cols=76 Identities=18% Similarity=0.310 Sum_probs=45.0
Q ss_pred hCCCCCcEEEEEcCCCchHHHHHHHHh-cCCc-EEEEeCCCCCCCCHHHHHHHHH-hCCCeEEEEcCHHHHhCCCCEEEE
Q 024871 102 VGRLEGTKVVYVGDGNNIVHSWLLMAS-VIPF-HFVCACPKGFEPDKETVEKARK-AGISKIEITNDPKEVVQGADVVYS 178 (261)
Q Consensus 102 ~g~l~~~~i~~vGd~~~v~~S~~~~~~-~~g~-~~~~~~P~~~~~~~~~~~~~~~-~g~~~i~~~~d~~~a~~~aDviy~ 178 (261)
+..-+.++++++|-+ ..+...+.++. ..++ ++.+..... .-.+.+.++.++ .| ..+...+|++++++++|+|++
T Consensus 127 la~~~~~~v~IiGaG-~~a~~~~~al~~~~~~~~V~v~~R~~-~~a~~l~~~~~~~~g-~~v~~~~d~~~al~~aDiVi~ 203 (330)
T PRK08291 127 LAREDASRAAVIGAG-EQARLQLEALTLVRPIREVRVWARDA-AKAEAYAADLRAELG-IPVTVARDVHEAVAGADIIVT 203 (330)
T ss_pred hCCCCCCEEEEECCC-HHHHHHHHHHHhcCCCCEEEEEcCCH-HHHHHHHHHHhhccC-ceEEEeCCHHHHHccCCEEEE
Confidence 344556899999974 33555444443 3454 566665421 111222222222 24 356678999999999999998
Q ss_pred ec
Q 024871 179 DV 180 (261)
Q Consensus 179 ~~ 180 (261)
.+
T Consensus 204 aT 205 (330)
T PRK08291 204 TT 205 (330)
T ss_pred ee
Confidence 76
No 161
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=88.58 E-value=6.1 Score=37.79 Aligned_cols=112 Identities=17% Similarity=0.101 Sum_probs=59.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCc-------EEEEe-CCCC-CCCCHHHHHHHHHh-C-CCeEEEEcCHHHHhCCC
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPF-------HFVCA-CPKG-FEPDKETVEKARKA-G-ISKIEITNDPKEVVQGA 173 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~-------~~~~~-~P~~-~~~~~~~~~~~~~~-g-~~~i~~~~d~~~a~~~a 173 (261)
.+-+||+++|-.++|..+.+..+...++ .+++. .+.. -....+.+|..... . ...+.++.+..+.++|+
T Consensus 42 ~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kda 121 (387)
T TIGR01757 42 KKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDA 121 (387)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCC
Confidence 4569999999868888888776654332 34444 2221 12223333332221 1 12466666778899999
Q ss_pred CEEEEec-ccCcchhHHHHH---HHhhhcCCcccHHHHHhcCCCcEEee
Q 024871 174 DVVYSDV-WASMGQKEEAAY---RKQAFQGFQVDEFLMKLAGPKAYFMH 218 (261)
Q Consensus 174 Dviy~~~-w~~~~~~~~~~~---~~~~~~~y~v~~~~~~~a~~~~~~mH 218 (261)
|+|+.+. -++...++|.+- ..+.+ -.+-+++.+.++++++++=
T Consensus 122 DIVVitAG~prkpg~tR~dll~~N~~I~--k~i~~~I~~~a~~~~iviV 168 (387)
T TIGR01757 122 DWALLIGAKPRGPGMERADLLDINGQIF--ADQGKALNAVASKNCKVLV 168 (387)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHH--HHHHHHHHHhCCCCeEEEE
Confidence 9988864 111111223211 11111 1244555555667886554
No 162
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=88.40 E-value=11 Score=36.92 Aligned_cols=155 Identities=16% Similarity=0.153 Sum_probs=85.5
Q ss_pred HHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCCh----hHHHH
Q 024871 18 TGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHP----CQIMA 93 (261)
Q Consensus 18 ~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HP----tQ~L~ 93 (261)
.=...+|.++... +..+.|++|.-++=++-..+++-........+.+.+.-++|.+...=-+-+. .+.|+
T Consensus 211 ~lL~~~Gl~v~~~------~~~~~s~eei~~~~~A~lniv~~~~~~~~~A~~L~erfGiP~~~~~p~G~~~T~~~l~~la 284 (475)
T PRK14478 211 PLLDRLGIRVVAC------ITGDARYDDVASAHRARANMMVCSGAMINLARKMEERYGIPFFEGSFYGIEDTSDSLRQIA 284 (475)
T ss_pred HHHHHcCCeEEEE------cCCCCCHHHHHhcccCcEEEEEcHHHHHHHHHHHHHHhCCCEEecCCCcHHHHHHHHHHHH
Confidence 3445667766532 2345677777775555556655333334456677777899988632111222 34555
Q ss_pred HHH---H------------H-----------HHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHH
Q 024871 94 DAL---T------------I-----------IEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKE 147 (261)
Q Consensus 94 Dl~---T------------i-----------~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~ 147 (261)
+++ - | .+....+.|+++++.||. ....+++..+.-+|+++..+.-....+. +
T Consensus 285 ~~~~~~~~~~~~~~~~e~~i~~e~~~~~~~l~~~~~~l~Gk~vaI~~~~-~~~~~la~~l~ElGm~v~~~~~~~~~~~-~ 362 (475)
T PRK14478 285 RLLVERGADAELVERTEALIAEEEAKAWAALEPYRPRLEGKRVLLYTGG-VKSWSVVKALQELGMEVVGTSVKKSTDE-D 362 (475)
T ss_pred HHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCC-chHHHHHHHHHHCCCEEEEEEEECCCHH-H
Confidence 555 0 1 111224899999999885 4566888888889999876654332221 1
Q ss_pred HHHHHHH-hCCCeEEEEcC--HH---HHh--CCCCEEEEeccc
Q 024871 148 TVEKARK-AGISKIEITND--PK---EVV--QGADVVYSDVWA 182 (261)
Q Consensus 148 ~~~~~~~-~g~~~i~~~~d--~~---~a~--~~aDviy~~~w~ 182 (261)
.+..+. .+ ....+.+| .. +.+ .+.|++....|.
T Consensus 363 -~~~l~~~~~-~~~~v~~d~~~~e~~~~i~~~~pDliig~s~~ 403 (475)
T PRK14478 363 -KERIKELMG-PDAHMIDDANPRELYKMLKEAKADIMLSGGRS 403 (475)
T ss_pred -HHHHHHHcC-CCcEEEeCCCHHHHHHHHhhcCCCEEEecCch
Confidence 111222 12 12233344 23 334 357899887653
No 163
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.27 E-value=5.4 Score=36.88 Aligned_cols=70 Identities=17% Similarity=0.067 Sum_probs=44.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCC--cEEEEeCCCCCCCCHHHHHHHHHh---CCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIP--FHFVCACPKGFEPDKETVEKARKA---GISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g--~~~~~~~P~~~~~~~~~~~~~~~~---g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
.||+++|- ++|..+++..+...| -+++++-...-......+|..... +..++..+.|.++ ++|||+|+.+
T Consensus 4 ~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvit 78 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVT 78 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEEC
Confidence 59999994 888888877766655 478777654322333333332222 1135555567664 9999999875
No 164
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=88.16 E-value=2.4 Score=38.65 Aligned_cols=67 Identities=28% Similarity=0.266 Sum_probs=48.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCc--EEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPF--HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
..+|+++| .+++..|++..+...|. ++++..+ .++..+.+++.|. ......+++++++++|+|+...
T Consensus 6 ~~~I~IIG-~G~mG~sla~~l~~~g~~~~V~~~dr-----~~~~~~~a~~~g~-~~~~~~~~~~~~~~aDvViiav 74 (307)
T PRK07502 6 FDRVALIG-IGLIGSSLARAIRRLGLAGEIVGADR-----SAETRARARELGL-GDRVTTSAAEAVKGADLVILCV 74 (307)
T ss_pred CcEEEEEe-eCHHHHHHHHHHHhcCCCcEEEEEEC-----CHHHHHHHHhCCC-CceecCCHHHHhcCCCEEEECC
Confidence 36899999 58899999988877774 6666654 3444556666663 2345667888999999998864
No 165
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=88.16 E-value=3.9 Score=34.53 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=47.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH-hCCCeEEEE-----cCHHHHhCCCCEEE
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK-AGISKIEIT-----NDPKEVVQGADVVY 177 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~-~g~~~i~~~-----~d~~~a~~~aDviy 177 (261)
++++++++++|..+.+....+..+...|.++++++... .--+.+.+...+ .+ ..+... +++.++++++|+|+
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~-~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~diVi 102 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL-ERAQKAADSLRARFG-EGVGAVETSDDAARAAAIKGADVVF 102 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHHHHHHHhhcC-CcEEEeeCCCHHHHHHHHhcCCEEE
Confidence 68999999999777888888877777788888876531 111122222221 22 223322 22347899999999
Q ss_pred Eec
Q 024871 178 SDV 180 (261)
Q Consensus 178 ~~~ 180 (261)
+..
T Consensus 103 ~at 105 (194)
T cd01078 103 AAG 105 (194)
T ss_pred ECC
Confidence 864
No 166
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=88.12 E-value=1.4 Score=42.62 Aligned_cols=73 Identities=18% Similarity=0.201 Sum_probs=42.8
Q ss_pred cEEEEEcCCCc----hHHHHHHHHhcC-CcEEEEeCCCC--CCCCHHHHH-HHHHhCC-CeEEEEcCHHHHhCCCCEEEE
Q 024871 108 TKVVYVGDGNN----IVHSWLLMASVI-PFHFVCACPKG--FEPDKETVE-KARKAGI-SKIEITNDPKEVVQGADVVYS 178 (261)
Q Consensus 108 ~~i~~vGd~~~----v~~S~~~~~~~~-g~~~~~~~P~~--~~~~~~~~~-~~~~~g~-~~i~~~~d~~~a~~~aDviy~ 178 (261)
.||+++|.++- ++.+++.....+ +-++.+.-.+. +..-..+.+ .+++.|. -+++.+.|.++|++|||+|++
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi~ 80 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN 80 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 58999998752 344444333223 35666554322 221111111 2233442 368889999999999999999
Q ss_pred ec
Q 024871 179 DV 180 (261)
Q Consensus 179 ~~ 180 (261)
.-
T Consensus 81 ~i 82 (425)
T cd05197 81 QF 82 (425)
T ss_pred ee
Confidence 74
No 167
>PRK12861 malic enzyme; Reviewed
Probab=88.12 E-value=11 Score=39.32 Aligned_cols=147 Identities=18% Similarity=0.176 Sum_probs=86.9
Q ss_pred HHHHHHhhhccEEEEeeCCcch----HHHHhhhCCCcEEeCCCCCCChh--HHHHHHHHHHHHhC-CCCCcEEEEEcCCC
Q 024871 45 DAARVLCRYNDIIMARVFGHQD----ILDLAKFATVPVINGLTDYNHPC--QIMADALTIIEHVG-RLEGTKVVYVGDGN 117 (261)
Q Consensus 45 Dt~~~ls~~~D~iv~R~~~~~~----~~~~a~~~~vPVINa~~~~~HPt--Q~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~ 117 (261)
++++.+..-+-.|=+-+++... ++++-+..++||+| |..|=| =+|+=++.-.+..| +++..||++.|-+.
T Consensus 123 ~~v~a~~~~fg~i~lED~~~p~~f~il~~~~~~~~ipvf~---DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGa 199 (764)
T PRK12861 123 DIIAGLEPTFGGINLEDIKAPECFTVERKLRERMKIPVFH---DDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGA 199 (764)
T ss_pred HHHHHHHhhcCCceeeeccCchHHHHHHHHHhcCCCCeec---cccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhH
Confidence 4444444433335565555433 23333445799999 345555 45666766666665 59999999999762
Q ss_pred -chHHHHHHHHhcCCc---EEEEeCCCCCC-------CCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcch
Q 024871 118 -NIVHSWLLMASVIPF---HFVCACPKGFE-------PDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQ 186 (261)
Q Consensus 118 -~v~~S~~~~~~~~g~---~~~~~~P~~~~-------~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~ 186 (261)
.+.-. .++...|. +++++--+|+- +.+....+++..+ ..++.|+++++||++-.+ +
T Consensus 200 Ag~~ia--~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~------~~~L~eai~~advliG~S----~- 266 (764)
T PRK12861 200 AALACL--DLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQETD------ARTLAEVIGGADVFLGLS----A- 266 (764)
T ss_pred HHHHHH--HHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcC------CCCHHHHHhcCCEEEEcC----C-
Confidence 33322 22223465 57666544421 2333334454432 248999999999998874 1
Q ss_pred hHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC
Q 024871 187 KEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC 219 (261)
Q Consensus 187 ~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~ 219 (261)
+=-+|+++++...++.||+-.
T Consensus 267 ------------~g~ft~e~v~~Ma~~PIIFaL 287 (764)
T PRK12861 267 ------------GGVLKAEMLKAMAARPLILAL 287 (764)
T ss_pred ------------CCCCCHHHHHHhccCCEEEEC
Confidence 123677777776667777754
No 168
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.05 E-value=10 Score=34.02 Aligned_cols=67 Identities=12% Similarity=0.238 Sum_probs=43.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhcCC----cEEEEeCCCCCCCCHHHHHHH-HHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASVIP----FHFVCACPKGFEPDKETVEKA-RKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~~g----~~~~~~~P~~~~~~~~~~~~~-~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
++.||+|+| .+++..+++..+..-| .++++..+. +++..+.+ ++.| +..+++..++++++|+|+.-.
T Consensus 2 ~~mkI~~IG-~G~mG~aia~~l~~~g~~~~~~v~v~~r~----~~~~~~~l~~~~g---~~~~~~~~e~~~~aDvVilav 73 (279)
T PRK07679 2 SIQNISFLG-AGSIAEAIIGGLLHANVVKGEQITVSNRS----NETRLQELHQKYG---VKGTHNKKELLTDANILFLAM 73 (279)
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHHCCCCCcceEEEECCC----CHHHHHHHHHhcC---ceEeCCHHHHHhcCCEEEEEe
Confidence 457999999 5888888887765544 455554331 12222322 3345 356788889999999988864
No 169
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=87.95 E-value=1.3 Score=37.30 Aligned_cols=75 Identities=19% Similarity=0.180 Sum_probs=44.4
Q ss_pred hhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcC
Q 024871 51 CRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVI 130 (261)
Q Consensus 51 s~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~ 130 (261)
+.-+|+|+-|. +....+.++.++|||.---+ -.|++....... -.+.||++||-.+. ...+......+
T Consensus 32 ~~g~dViIsRG---~ta~~lr~~~~iPVV~I~~s-------~~Dil~al~~a~-~~~~~Iavv~~~~~-~~~~~~~~~ll 99 (176)
T PF06506_consen 32 SEGADVIISRG---GTAELLRKHVSIPVVEIPIS-------GFDILRALAKAK-KYGPKIAVVGYPNI-IPGLESIEELL 99 (176)
T ss_dssp TTT-SEEEEEH---HHHHHHHCC-SS-EEEE----------HHHHHHHHHHCC-CCTSEEEEEEESS--SCCHHHHHHHH
T ss_pred hcCCeEEEECC---HHHHHHHHhCCCCEEEECCC-------HhHHHHHHHHHH-hcCCcEEEEecccc-cHHHHHHHHHh
Confidence 34489999993 46677778889999995322 256666665544 45699999997433 23344444445
Q ss_pred CcEEEEe
Q 024871 131 PFHFVCA 137 (261)
Q Consensus 131 g~~~~~~ 137 (261)
|+++...
T Consensus 100 ~~~i~~~ 106 (176)
T PF06506_consen 100 GVDIKIY 106 (176)
T ss_dssp T-EEEEE
T ss_pred CCceEEE
Confidence 7666554
No 170
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=87.95 E-value=1.9 Score=36.69 Aligned_cols=69 Identities=19% Similarity=0.229 Sum_probs=44.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCC-------------CCCCCC-HHHHHHHHHhCCCeEEEEcCHHHHhCCC
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACP-------------KGFEPD-KETVEKARKAGISKIEITNDPKEVVQGA 173 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P-------------~~~~~~-~~~~~~~~~~g~~~i~~~~d~~~a~~~a 173 (261)
+||+++| .+.|.-.++..++.-|.+++.+-. +-+++. +++++...+. +++..+.|.+++++++
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~--~~l~~t~~~~~ai~~a 77 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSA--GRLRATTDIEEAIKDA 77 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHT--TSEEEESEHHHHHHH-
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhcccccc--ccchhhhhhhhhhhcc
Confidence 4899998 478888888888888988876542 112222 2233322223 4789999999999999
Q ss_pred CEEEEe
Q 024871 174 DVVYSD 179 (261)
Q Consensus 174 Dviy~~ 179 (261)
|+++..
T Consensus 78 dv~~I~ 83 (185)
T PF03721_consen 78 DVVFIC 83 (185)
T ss_dssp SEEEE-
T ss_pred ceEEEe
Confidence 998874
No 171
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=87.88 E-value=6.4 Score=36.65 Aligned_cols=74 Identities=16% Similarity=0.092 Sum_probs=45.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCc-------EEEEeCCCC-CC-CCHHHHHHHHHh--CCCeEEEEcCHHHHhCCCCE
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPF-------HFVCACPKG-FE-PDKETVEKARKA--GISKIEITNDPKEVVQGADV 175 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~-------~~~~~~P~~-~~-~~~~~~~~~~~~--g~~~i~~~~d~~~a~~~aDv 175 (261)
-+||+++|..++|..+++..+..-|. ++++.--++ .. ...+.+|..... ....+.++.+..+.++|||+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDv 82 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDA 82 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCE
Confidence 47999999867788887766554442 677665432 11 333333432221 01234555677889999999
Q ss_pred EEEec
Q 024871 176 VYSDV 180 (261)
Q Consensus 176 iy~~~ 180 (261)
|+.+.
T Consensus 83 VVitA 87 (323)
T TIGR01759 83 ALLVG 87 (323)
T ss_pred EEEeC
Confidence 88764
No 172
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=87.81 E-value=7 Score=38.10 Aligned_cols=140 Identities=19% Similarity=0.173 Sum_probs=77.4
Q ss_pred CCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChh----HHHHHHHH--------HHH------
Q 024871 39 KREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPC----QIMADALT--------IIE------ 100 (261)
Q Consensus 39 kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPt----Q~L~Dl~T--------i~e------ 100 (261)
.|-|++|..++=++-..+++.........+.+.+.-++|.++..--+-+.| +.|++++- |.+
T Consensus 236 g~~t~~ei~~~~~A~lnlv~~~~~~~~~A~~Leer~GiP~~~~~p~Gi~~T~~~L~~la~~~g~~~~~e~~I~~e~~~~~ 315 (461)
T TIGR01860 236 GNGTYDDLRCMHRAQLNVVNCARSAGYIANELKKRYGIPRLDVDTWGFNYMAEALRKIGAFFGIEDKAEEVIAEEYAKYK 315 (461)
T ss_pred CCCCHHHHHhcccCcEEEEECchHHHHHHHHHHHHhCCCeecCCcCCHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 466777766655555555554333333556777778999888532223333 44445543 211
Q ss_pred -----HhCCCCCcEEEEEcCCCchHHHHHHHHh-cCCcEEEEeCCCCCCCCHHHHHHHHHhC-CCeEEEEc--CHH--HH
Q 024871 101 -----HVGRLEGTKVVYVGDGNNIVHSWLLMAS-VIPFHFVCACPKGFEPDKETVEKARKAG-ISKIEITN--DPK--EV 169 (261)
Q Consensus 101 -----~~g~l~~~~i~~vGd~~~v~~S~~~~~~-~~g~~~~~~~P~~~~~~~~~~~~~~~~g-~~~i~~~~--d~~--~a 169 (261)
....|.|+|+++.|+... ..+++..+. -+|++++.++.. +.- ++.++...+.+ ...+.+.+ +.+ +.
T Consensus 316 ~~Ld~~~~~L~GkrvaI~~~~~~-~~~~~~~l~~ElGmevv~~~~~-~~~-~~~~~~~~~~~~~~~i~i~d~~~~e~~~~ 392 (461)
T TIGR01860 316 PKLDWYKERLQGKKMCIWTGGPR-LWHWTKALEDDLGMQVVAMSSK-FGH-QEDFEKVIARGKEGTIYIDDGNELEFFEV 392 (461)
T ss_pred HHHHHHHHHcCCCEEEEECCCch-HHHHHHHHHHhCCCEEEEEeee-cCC-HHHHHHHHHhcCCCeEEEeCCCHHHHHHH
Confidence 113589999999987543 355666666 499998877643 222 33333333322 12233322 232 22
Q ss_pred hC--CCCEEEEecc
Q 024871 170 VQ--GADVVYSDVW 181 (261)
Q Consensus 170 ~~--~aDviy~~~w 181 (261)
++ ++|+++...|
T Consensus 393 ~~~~~pDliig~s~ 406 (461)
T TIGR01860 393 LDLIKPDVIFTGPR 406 (461)
T ss_pred HHhcCCCEEEeCCc
Confidence 33 6899998764
No 173
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=87.73 E-value=24 Score=33.90 Aligned_cols=157 Identities=8% Similarity=0.037 Sum_probs=84.0
Q ss_pred HHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCC--CCCChhHH--
Q 024871 16 FETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLT--DYNHPCQI-- 91 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~--~~~HPtQ~-- 91 (261)
...=...+|.++..+-+ .+-|++|..+.-++-..+++-+.......+.+.+.-++|.+.... -+-+.|..
T Consensus 178 lk~lL~~~Gl~v~~~~~------~~~~~~ei~~~~~A~~niv~~~~~g~~~a~~L~~~~giP~i~~~~~P~G~~~t~~~l 251 (427)
T cd01971 178 IKRVLEGIGLKVNILFG------PESNGEELRSIPKAQFNLVLSPWVGLEFAQHLEEKYGQPYIHSPTLPIGAKATAEFL 251 (427)
T ss_pred HHHHHHHCCCeEEEEEC------CCCCHHHHHhcccCcEEEEEcHhhHHHHHHHHHHHhCCceEecCCCccCHHHHHHHH
Confidence 33345677877755421 245567776665555665554432445667777888999887531 22222222
Q ss_pred --HHHHHH---------HHHH----------h-----CCCCCcEEEEEcCCCchHHHHHHHHh-cCCcEEEEe-CCCCCC
Q 024871 92 --MADALT---------IIEH----------V-----GRLEGTKVVYVGDGNNIVHSWLLMAS-VIPFHFVCA-CPKGFE 143 (261)
Q Consensus 92 --L~Dl~T---------i~e~----------~-----g~l~~~~i~~vGd~~~v~~S~~~~~~-~~g~~~~~~-~P~~~~ 143 (261)
|++++- +.+. + ....|+|++++||. -.+.++...+. -+|+.+..+ ++.+.
T Consensus 252 ~~i~~~~g~~~~~~~~~i~~e~~~~~~~l~~~~d~l~~~~~~k~vai~~~~-~~~~~l~~~L~~elGm~~~~~~~~~~~- 329 (427)
T cd01971 252 RQVAKFAGIEKAKVEAFIKAEEKRYYHYLERFSDFMARWGLPRRFAVIADS-TYALGLARFLVNELGWVPAKQVITDNP- 329 (427)
T ss_pred HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEECCh-HHHHHHHHHHHHhcCCceEEEEecCCC-
Confidence 222211 0010 1 12347999999984 36677777775 689977554 33322
Q ss_pred CCHHHHHH----HHHhC-CCeEEEEcCHHH---HhC------CCCEEEEecc
Q 024871 144 PDKETVEK----ARKAG-ISKIEITNDPKE---VVQ------GADVVYSDVW 181 (261)
Q Consensus 144 ~~~~~~~~----~~~~g-~~~i~~~~d~~~---a~~------~aDviy~~~w 181 (261)
+++..+. .++.+ ...+.+..|+.+ .++ +.|+|....|
T Consensus 330 -~~~~~~~~~~~~~~~~~~~~v~~~~D~~~~~~~i~~~~~~~~~dliig~s~ 380 (427)
T cd01971 330 -PEKYRSAIENEFEAEGVSAEVVFSEDGYAIGQSLRQSDFKYKPPIIFGSSW 380 (427)
T ss_pred -CHHHHHHHHHHHHhcCCCCcEEEecCHHHHHHHHHhCCCCCCCCEEEechH
Confidence 2222222 22222 134556666543 343 2889999864
No 174
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=87.68 E-value=6 Score=39.26 Aligned_cols=95 Identities=12% Similarity=0.096 Sum_probs=61.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEE----------------cC---
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEIT----------------ND--- 165 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~----------------~d--- 165 (261)
..+.|++++|. +.+..+.+..+..+|..++.+.. .++.++.+++.|...+.+. ++
T Consensus 162 vp~akVlViGa-G~iGl~Aa~~ak~lGA~V~v~d~-----~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~ 235 (511)
T TIGR00561 162 VPPAKVLVIGA-GVAGLAAIGAANSLGAIVRAFDT-----RPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIA 235 (511)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeC-----CHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHH
Confidence 56679999995 77888888888899998776544 3344566666663222221 11
Q ss_pred -----HHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEE
Q 024871 166 -----PKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYF 216 (261)
Q Consensus 166 -----~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~ 216 (261)
..+.++++|+||++.-.. |. ..+.-+++++++..|+...|
T Consensus 236 ~~~~~~~e~~~~~DIVI~Talip-G~----------~aP~Lit~emv~~MKpGsvI 280 (511)
T TIGR00561 236 AEMELFAAQAKEVDIIITTALIP-GK----------PAPKLITEEMVDSMKAGSVI 280 (511)
T ss_pred HHHHHHHHHhCCCCEEEECcccC-CC----------CCCeeehHHHHhhCCCCCEE
Confidence 345678999999986211 21 12445788888887776554
No 175
>PRK08618 ornithine cyclodeaminase; Validated
Probab=87.53 E-value=2.7 Score=38.87 Aligned_cols=78 Identities=14% Similarity=0.225 Sum_probs=47.3
Q ss_pred HHhCCCCCcEEEEEcCCCchHHHHHHHH-hcCCc-EEEEeCCCCCCCCHHHHHHHHH-hCCCeEEEEcCHHHHhCCCCEE
Q 024871 100 EHVGRLEGTKVVYVGDGNNIVHSWLLMA-SVIPF-HFVCACPKGFEPDKETVEKARK-AGISKIEITNDPKEVVQGADVV 176 (261)
Q Consensus 100 e~~g~l~~~~i~~vGd~~~v~~S~~~~~-~~~g~-~~~~~~P~~~~~~~~~~~~~~~-~g~~~i~~~~d~~~a~~~aDvi 176 (261)
+++..-+.++++++|- +..+++.+..+ ...++ ++.++.+. .+-.+++.+..++ .+ ..+...+|.+++++++|+|
T Consensus 120 ~~la~~~~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~-~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~aDiV 196 (325)
T PRK08618 120 KYLAREDAKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRT-FEKAYAFAQEIQSKFN-TEIYVVNSADEAIEEADII 196 (325)
T ss_pred HHhcCCCCcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCC-HHHHHHHHHHHHHhcC-CcEEEeCCHHHHHhcCCEE
Confidence 3455567799999996 44555554443 34565 45555442 2222233333332 34 3456688999999999999
Q ss_pred EEec
Q 024871 177 YSDV 180 (261)
Q Consensus 177 y~~~ 180 (261)
++-+
T Consensus 197 i~aT 200 (325)
T PRK08618 197 VTVT 200 (325)
T ss_pred EEcc
Confidence 9976
No 176
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=87.30 E-value=2.8 Score=38.57 Aligned_cols=76 Identities=21% Similarity=0.171 Sum_probs=50.7
Q ss_pred HHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCC-cEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEE
Q 024871 99 IEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIP-FHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVY 177 (261)
Q Consensus 99 ~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g-~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy 177 (261)
...+|++.|.+|+++|- +.+....+..+...| .+++++.+.. +...+.+++.|. .+...+++.++++++|+|+
T Consensus 170 ~~~~~~l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~----~ra~~la~~~g~-~~~~~~~~~~~l~~aDvVi 243 (311)
T cd05213 170 EKIFGNLKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTY----ERAEELAKELGG-NAVPLDELLELLNEADVVI 243 (311)
T ss_pred HHHhCCccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCH----HHHHHHHHHcCC-eEEeHHHHHHHHhcCCEEE
Confidence 44567799999999996 666666666655555 4676665421 222344566663 3333356788899999999
Q ss_pred Eec
Q 024871 178 SDV 180 (261)
Q Consensus 178 ~~~ 180 (261)
+..
T Consensus 244 ~at 246 (311)
T cd05213 244 SAT 246 (311)
T ss_pred ECC
Confidence 975
No 177
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=87.05 E-value=3.1 Score=38.52 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=42.1
Q ss_pred EEEEEcCCCchHHHHHHHHhcCC--cEEEEeCCCCCCCCHHHHHHHHHhCCCeEEE-E--cCHHHHhCCCCEEEEec
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIP--FHFVCACPKGFEPDKETVEKARKAGISKIEI-T--NDPKEVVQGADVVYSDV 180 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g--~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~-~--~d~~~a~~~aDviy~~~ 180 (261)
||+++|..++|..+++..+..-+ -+++++-.+. ...+.+|........++.- + +|+.++++|||+|+.+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvita 75 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPA 75 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeC
Confidence 68999976888888777665544 4777776544 2222233222111123442 1 24578999999988764
No 178
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=86.78 E-value=6.3 Score=36.04 Aligned_cols=71 Identities=17% Similarity=0.156 Sum_probs=42.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCc--EEEEeCCCCCCCCHHHHHHHHH---hCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPF--HFVCACPKGFEPDKETVEKARK---AGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~---~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+||+++|- +++..+.+..+...|. +++++-...-.......+..+. .+ ....+..+..+.+++||+|+...
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~-~~~~i~~~~~~~l~~aDIVIita 76 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLP-SPVKIKAGDYSDCKDADIVVITA 76 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccC-CCeEEEcCCHHHhCCCCEEEEcc
Confidence 48999995 7899998888777773 6777765332222211121111 12 22233334355799999999864
No 179
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=86.78 E-value=5.7 Score=31.79 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=47.2
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCC-cEEEEeCCCCCCCCHHHHHHHHHhCCCe-EEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIP-FHFVCACPKGFEPDKETVEKARKAGISK-IEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g-~~~~~~~P~~~~~~~~~~~~~~~~g~~~-i~~~~d~~~a~~~aDviy~~~ 180 (261)
++++++++++|- +++..+.+..+...| ..++++.+.. +...+.+++.+... .....+.+++++++|+|+...
T Consensus 16 ~~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~ 89 (155)
T cd01065 16 ELKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTL----EKAKALAERFGELGIAIAYLDLEELLAEADLIINTT 89 (155)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCH----HHHHHHHHHHhhcccceeecchhhccccCCEEEeCc
Confidence 478999999996 688899888887775 5677665421 11222233333110 123457778899999999975
No 180
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.67 E-value=4 Score=37.92 Aligned_cols=73 Identities=18% Similarity=0.106 Sum_probs=42.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCc-------EEEEeCCCC--CCCCHHHHHHHHHh--CCCeEEEEcCHHHHhCCCCEE
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPF-------HFVCACPKG--FEPDKETVEKARKA--GISKIEITNDPKEVVQGADVV 176 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~-------~~~~~~P~~--~~~~~~~~~~~~~~--g~~~i~~~~d~~~a~~~aDvi 176 (261)
+||+++|..++|..+++..+..-|. ++++.-.++ -......+|..... ....+.++.+..+++++||+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 6899999878899988877654331 355554322 11111111211111 012245556778999999998
Q ss_pred EEec
Q 024871 177 YSDV 180 (261)
Q Consensus 177 y~~~ 180 (261)
+.+.
T Consensus 81 VitA 84 (323)
T cd00704 81 ILVG 84 (323)
T ss_pred EEeC
Confidence 8763
No 181
>PLN00203 glutamyl-tRNA reductase
Probab=86.63 E-value=2.7 Score=41.72 Aligned_cols=105 Identities=9% Similarity=0.066 Sum_probs=63.7
Q ss_pred HHHhCC--CCCcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHHhCCCeE--EEEcCHHHHhCCC
Q 024871 99 IEHVGR--LEGTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARKAGISKI--EITNDPKEVVQGA 173 (261)
Q Consensus 99 ~e~~g~--l~~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~g~~~i--~~~~d~~~a~~~a 173 (261)
.+.+|+ |++++|+++|- +.++...+..+...|. +++++.+.. +...+.+.+.+...+ ...+++.++++++
T Consensus 256 ~~~~~~~~l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~----era~~La~~~~g~~i~~~~~~dl~~al~~a 330 (519)
T PLN00203 256 LMKLPESSHASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSE----ERVAALREEFPDVEIIYKPLDEMLACAAEA 330 (519)
T ss_pred HHhcCCCCCCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCH----HHHHHHHHHhCCCceEeecHhhHHHHHhcC
Confidence 345664 99999999997 6677777766666786 677765432 111122333331222 2345778899999
Q ss_pred CEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcC--------CCcEEeeCCCCC
Q 024871 174 DVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAG--------PKAYFMHCLPAE 223 (261)
Q Consensus 174 Dviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~--------~~~~~mH~lP~~ 223 (261)
|+|++.+ +. ..+.++.+.++.+. |-.+|==..|++
T Consensus 331 DVVIsAT----~s-----------~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRd 373 (519)
T PLN00203 331 DVVFTST----SS-----------ETPLFLKEHVEALPPASDTVGGKRLFVDISVPRN 373 (519)
T ss_pred CEEEEcc----CC-----------CCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCC
Confidence 9999864 21 13567777776542 223444557854
No 182
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.41 E-value=5.5 Score=37.02 Aligned_cols=74 Identities=19% Similarity=0.133 Sum_probs=43.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCc-------EEEEeCCC-CCC-CCHHHHHHHHHh-C-CCeEEEEcCHHHHhCCCCE
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPF-------HFVCACPK-GFE-PDKETVEKARKA-G-ISKIEITNDPKEVVQGADV 175 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~-------~~~~~~P~-~~~-~~~~~~~~~~~~-g-~~~i~~~~d~~~a~~~aDv 175 (261)
-+||+++|-.++|..|++..+..-+. ++++.-=+ ... .....+|..... . ...++++.+..+.++|||+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDi 81 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW 81 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCE
Confidence 36999999768888888876654443 56555321 111 222222222111 0 0235566677889999999
Q ss_pred EEEec
Q 024871 176 VYSDV 180 (261)
Q Consensus 176 iy~~~ 180 (261)
|+.+.
T Consensus 82 vvita 86 (322)
T cd01338 82 ALLVG 86 (322)
T ss_pred EEEeC
Confidence 88864
No 183
>PLN02688 pyrroline-5-carboxylate reductase
Probab=86.38 E-value=3.9 Score=36.21 Aligned_cols=64 Identities=16% Similarity=0.213 Sum_probs=44.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCc----EEEEe-CCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPF----HFVCA-CPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~----~~~~~-~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+|+| .+++..+++..+..-|. ++++. .+ .++..+.+.+.| +...++.+++++++|+|+.-.
T Consensus 1 ~kI~~IG-~G~mG~a~a~~L~~~g~~~~~~i~v~~~r-----~~~~~~~~~~~g---~~~~~~~~e~~~~aDvVil~v 69 (266)
T PLN02688 1 FRVGFIG-AGKMAEAIARGLVASGVVPPSRISTADDS-----NPARRDVFQSLG---VKTAASNTEVVKSSDVIILAV 69 (266)
T ss_pred CeEEEEC-CcHHHHHHHHHHHHCCCCCcceEEEEeCC-----CHHHHHHHHHcC---CEEeCChHHHHhcCCEEEEEE
Confidence 3799999 58888888877666554 66654 32 233344455555 355778889999999998864
No 184
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.36 E-value=4.2 Score=36.74 Aligned_cols=67 Identities=24% Similarity=0.290 Sum_probs=47.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH-----------hC-----------CCeEEEEcC
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK-----------AG-----------ISKIEITND 165 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~-----------~g-----------~~~i~~~~d 165 (261)
.||+++|- +.+..+++..++.-|.++++..+.. +.++.+++ .+ ...+..++|
T Consensus 4 ~kIaViGa-G~mG~~iA~~la~~G~~V~l~d~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d 77 (287)
T PRK08293 4 KNVTVAGA-GVLGSQIAFQTAFHGFDVTIYDISD-----EALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTD 77 (287)
T ss_pred cEEEEECC-CHHHHHHHHHHHhcCCeEEEEeCCH-----HHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCC
Confidence 58999995 7788888888888888888776542 22221111 00 135678899
Q ss_pred HHHHhCCCCEEEEec
Q 024871 166 PKEVVQGADVVYSDV 180 (261)
Q Consensus 166 ~~~a~~~aDviy~~~ 180 (261)
++++++++|+|+.-.
T Consensus 78 ~~~a~~~aDlVieav 92 (287)
T PRK08293 78 LAEAVKDADLVIEAV 92 (287)
T ss_pred HHHHhcCCCEEEEec
Confidence 999999999999865
No 185
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=86.26 E-value=3.1 Score=37.52 Aligned_cols=64 Identities=20% Similarity=0.208 Sum_probs=46.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
++|+++| .+++..+++..+...|.++++..+ .++..+.+.+.| +...++++++++++|+|+.-.
T Consensus 3 ~~IgviG-~G~mG~~~a~~l~~~g~~v~~~d~-----~~~~~~~~~~~g---~~~~~~~~e~~~~~d~vi~~v 66 (296)
T PRK11559 3 MKVGFIG-LGIMGKPMSKNLLKAGYSLVVYDR-----NPEAVAEVIAAG---AETASTAKAVAEQCDVIITML 66 (296)
T ss_pred ceEEEEc-cCHHHHHHHHHHHHCCCeEEEEcC-----CHHHHHHHHHCC---CeecCCHHHHHhcCCEEEEeC
Confidence 5899999 477888888877788888776544 333344455555 245678999999999999863
No 186
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=86.22 E-value=1.9 Score=41.83 Aligned_cols=73 Identities=29% Similarity=0.314 Sum_probs=42.3
Q ss_pred cEEEEEcCCCc----hHHHHHHHHhcCC-cEEEEeCCCC--CCCCHHHHH-HHHHhCC-CeEEEEcCHHHHhCCCCEEEE
Q 024871 108 TKVVYVGDGNN----IVHSWLLMASVIP-FHFVCACPKG--FEPDKETVE-KARKAGI-SKIEITNDPKEVVQGADVVYS 178 (261)
Q Consensus 108 ~~i~~vGd~~~----v~~S~~~~~~~~g-~~~~~~~P~~--~~~~~~~~~-~~~~~g~-~~i~~~~d~~~a~~~aDviy~ 178 (261)
.||+++|.++- +..+++.....++ -++++.-.+. +..-..+.+ ..++.|. -+++.+.|.++|+++||+|++
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi~ 80 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFA 80 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEEE
Confidence 48999998752 3333333322343 5666654332 222111111 1223342 368889999999999999999
Q ss_pred ec
Q 024871 179 DV 180 (261)
Q Consensus 179 ~~ 180 (261)
.-
T Consensus 81 ~i 82 (437)
T cd05298 81 QI 82 (437)
T ss_pred Ee
Confidence 64
No 187
>PRK08655 prephenate dehydrogenase; Provisional
Probab=86.17 E-value=3.2 Score=40.17 Aligned_cols=66 Identities=21% Similarity=0.302 Sum_probs=48.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+++|..+.+..|++..+...|.++++..+.. +...+.+++.|. ..+.+.+++++++|+|+.-.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~----~~~~~~a~~~gv---~~~~~~~e~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDP----KKGKEVAKELGV---EYANDNIDAAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECCh----HHHHHHHHHcCC---eeccCHHHHhccCCEEEEec
Confidence 3799999768899999999988888887776431 122234555552 45678889999999988753
No 188
>PLN02712 arogenate dehydrogenase
Probab=85.97 E-value=2.8 Score=42.85 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=50.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhC-CCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQ-GADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~-~aDviy~~~ 180 (261)
.++++||++|| .+++..|++..+...|.+++...+.. . .+.+++.|. ....+++++++ ++|+|+.-.
T Consensus 366 ~~~~~kIgIIG-lG~mG~slA~~L~~~G~~V~~~dr~~-----~-~~~a~~~Gv---~~~~~~~el~~~~aDvVILav 433 (667)
T PLN02712 366 DGSKLKIAIVG-FGNFGQFLAKTMVKQGHTVLAYSRSD-----Y-SDEAQKLGV---SYFSDADDLCEEHPEVILLCT 433 (667)
T ss_pred CCCCCEEEEEe-cCHHHHHHHHHHHHCcCEEEEEECCh-----H-HHHHHHcCC---eEeCCHHHHHhcCCCEEEECC
Confidence 37889999999 68999999999888898888776642 1 134555663 35678888775 599998864
No 189
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=85.95 E-value=3.6 Score=40.38 Aligned_cols=72 Identities=18% Similarity=0.203 Sum_probs=46.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCH--HHHHHHHH-h---------CCCeEEEEcCHHHHhCCCCE
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDK--ETVEKARK-A---------GISKIEITNDPKEVVQGADV 175 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~--~~~~~~~~-~---------g~~~i~~~~d~~~a~~~aDv 175 (261)
+||++||- +++..+|+..+..-|.++++..|..-.... +.++.+.+ . ..+.+..++|+++++++||+
T Consensus 5 ~kIavIG~-G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~ 83 (495)
T PRK07531 5 MKAACIGG-GVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADW 83 (495)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCE
Confidence 48999994 889999998888889888877653211100 00000000 0 00246788999999999999
Q ss_pred EEEec
Q 024871 176 VYSDV 180 (261)
Q Consensus 176 iy~~~ 180 (261)
|+.-.
T Consensus 84 Vieav 88 (495)
T PRK07531 84 IQESV 88 (495)
T ss_pred EEEcC
Confidence 99753
No 190
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.74 E-value=2.1 Score=39.02 Aligned_cols=67 Identities=19% Similarity=0.273 Sum_probs=47.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH-----hC-----------CCeEEEEcCHHHHhC
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK-----AG-----------ISKIEITNDPKEVVQ 171 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~-----~g-----------~~~i~~~~d~~~a~~ 171 (261)
+||+++|- +++..+++..+..-|.+++++.+.. +.++.+++ .| ...+..++|.+++++
T Consensus 5 ~~I~vIGa-G~mG~~iA~~l~~~g~~V~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 78 (311)
T PRK06130 5 QNLAIIGA-GTMGSGIAALFARKGLQVVLIDVME-----GALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVS 78 (311)
T ss_pred cEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCH-----HHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhc
Confidence 58999995 7799999888888888888776532 22222221 11 023567888999999
Q ss_pred CCCEEEEec
Q 024871 172 GADVVYSDV 180 (261)
Q Consensus 172 ~aDviy~~~ 180 (261)
++|+|+.-.
T Consensus 79 ~aDlVi~av 87 (311)
T PRK06130 79 GADLVIEAV 87 (311)
T ss_pred cCCEEEEec
Confidence 999999864
No 191
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.73 E-value=2.7 Score=38.39 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=48.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCH------HHHHHHHHhCC----------CeEEEEcCHHHHhC
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDK------ETVEKARKAGI----------SKIEITNDPKEVVQ 171 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~------~~~~~~~~~g~----------~~i~~~~d~~~a~~ 171 (261)
.+|+++| .+.+..+++..++.-|.++++..+..-.... ..++.+.+.|. ..++.+.|+.++++
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 3799999 6789999998888889888877654211100 00001112221 23578899999999
Q ss_pred CCCEEEEec
Q 024871 172 GADVVYSDV 180 (261)
Q Consensus 172 ~aDviy~~~ 180 (261)
++|+|+.-.
T Consensus 82 ~ad~Vi~av 90 (308)
T PRK06129 82 DADYVQESA 90 (308)
T ss_pred CCCEEEECC
Confidence 999999875
No 192
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=85.65 E-value=4.4 Score=39.11 Aligned_cols=92 Identities=18% Similarity=0.173 Sum_probs=63.2
Q ss_pred HHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEE
Q 024871 99 IEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYS 178 (261)
Q Consensus 99 ~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~ 178 (261)
++.||+|+++++.++|- +-+....+.-+..-|..-+.++=..+.-.+ +.+++.| +.+.-.+++.+.+.++|||++
T Consensus 170 ~~~~~~L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~---~La~~~~-~~~~~l~el~~~l~~~DvVis 244 (414)
T COG0373 170 KRIFGSLKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAE---ELAKKLG-AEAVALEELLEALAEADVVIS 244 (414)
T ss_pred HHHhcccccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHH---HHHHHhC-CeeecHHHHHHhhhhCCEEEE
Confidence 45678899999999996 445555555555567544445556654333 3466777 455556788999999999999
Q ss_pred ecccCcchhHHHHHHHhhhcCCcccHHHHHhc
Q 024871 179 DVWASMGQKEEAAYRKQAFQGFQVDEFLMKLA 210 (261)
Q Consensus 179 ~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a 210 (261)
-+ +. ..|.|+.+.+..+
T Consensus 245 sT----sa-----------~~~ii~~~~ve~a 261 (414)
T COG0373 245 ST----SA-----------PHPIITREMVERA 261 (414)
T ss_pred ec----CC-----------CccccCHHHHHHH
Confidence 75 32 2478888888865
No 193
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=85.58 E-value=20 Score=35.55 Aligned_cols=153 Identities=16% Similarity=0.129 Sum_probs=87.7
Q ss_pred HHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChh----HHHHHH
Q 024871 20 FSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPC----QIMADA 95 (261)
Q Consensus 20 ~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPt----Q~L~Dl 95 (261)
...+|.+++.+- ..|-+++|..+.=++-+.+++.+.........+.+.-++|.++...-+-..| ..|+++
T Consensus 224 Le~~Gl~v~~~~------~gg~t~~ei~~~~~A~lniv~~~~~~~~~A~~Leer~GiP~~~~~~~Gi~~Td~~Lr~la~~ 297 (513)
T TIGR01861 224 FQRMGIQVLSTF------TGNGSYDDLRGMHRAHLNVLECARSAEYICNELRKRYGIPRLDIDGFGFEPLAASLRKVAMF 297 (513)
T ss_pred HHHCCCeEEEEe------CCCCCHHHHHhhccCCEEEEECHHHHHHHHHHHHHHhCCCeEecCcCCHHHHHHHHHHHHHH
Confidence 446777776431 2466778877776666777766544444566777788999887543233333 344444
Q ss_pred HH--------HHH-----------HhCCCCCcEEEEEcCCCchHHHHHHHHh-cCCcEEEEeCCCCCCCCHHHHHHHHHh
Q 024871 96 LT--------IIE-----------HVGRLEGTKVVYVGDGNNIVHSWLLMAS-VIPFHFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 96 ~T--------i~e-----------~~g~l~~~~i~~vGd~~~v~~S~~~~~~-~~g~~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
+- |.+ ....|.|+|+++.||+. -+.|++..+. =+|++++.++-+. .-.++.-+..+..
T Consensus 298 ~g~~~~~e~~I~~e~~~~r~~Ld~~~~~L~GKrvai~~gg~-~~~~~~~~l~~ElGmevv~~~t~~-~~~~d~~~~~~~~ 375 (513)
T TIGR01861 298 FGIEDEAQAIIDEETARWKPELDWYKERLKGKKVCLWPGGS-KLWHWAHVIEEEMGLKVVSVYSKF-GHQGDMEKGVARC 375 (513)
T ss_pred hCCChhHhHhhHHHHHHHHHHHHHHHHhcCCCEEEEECCch-HHHHHHHHHHHhCCCEEEEEeccC-CCHHHHHHHHHhC
Confidence 43 211 12458999999998753 5666776666 4999988765432 1122222222333
Q ss_pred CCCeEEEE--cCHH--HHh--CCCCEEEEec
Q 024871 156 GISKIEIT--NDPK--EVV--QGADVVYSDV 180 (261)
Q Consensus 156 g~~~i~~~--~d~~--~a~--~~aDviy~~~ 180 (261)
+...+.+. .+++ +.+ .++|+++...
T Consensus 376 ~~~~~~i~D~~~~e~~~~l~~~~~Dllig~s 406 (513)
T TIGR01861 376 GEGALAIDDPNELEGLEAMEMLKPDIILTGK 406 (513)
T ss_pred CCCcEEecCCCHHHHHHHHHhcCCCEEEecC
Confidence 42223322 2233 223 3699999864
No 194
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=85.50 E-value=4.9 Score=37.73 Aligned_cols=102 Identities=16% Similarity=0.093 Sum_probs=63.5
Q ss_pred HHhhhCCCcEEeCCCCCCC--hhHHHHHHHHHHHHh---------------------CCCCCcEEEEEcCCCchHHHHHH
Q 024871 69 DLAKFATVPVINGLTDYNH--PCQIMADALTIIEHV---------------------GRLEGTKVVYVGDGNNIVHSWLL 125 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~H--PtQ~L~Dl~Ti~e~~---------------------g~l~~~~i~~vGd~~~v~~S~~~ 125 (261)
+.++.-+|.|=|..+...- ---++..++.+.+++ .+++|+||+++|- +++....+.
T Consensus 101 ~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~-G~IG~~ia~ 179 (336)
T KOG0069|consen 101 EAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGL-GRIGKAIAK 179 (336)
T ss_pred HHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecC-cHHHHHHHH
Confidence 4456677888886432222 222344455554433 1378999999994 788888888
Q ss_pred HHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 126 MASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 126 ~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
-+..||..+.... -++++++ .+.+++ +. ..|.++-+.++|+|..-.
T Consensus 180 rL~~Fg~~i~y~~--r~~~~~~---~~~~~~-~~---~~d~~~~~~~sD~ivv~~ 225 (336)
T KOG0069|consen 180 RLKPFGCVILYHS--RTQLPPE---EAYEYY-AE---FVDIEELLANSDVIVVNC 225 (336)
T ss_pred hhhhccceeeeec--ccCCchh---hHHHhc-cc---ccCHHHHHhhCCEEEEec
Confidence 7777996555432 2333322 233444 22 568899999999999864
No 195
>PLN02477 glutamate dehydrogenase
Probab=85.38 E-value=24 Score=34.11 Aligned_cols=105 Identities=12% Similarity=0.068 Sum_probs=59.8
Q ss_pred CCCcEEeCCCCCCChhHHHHHHHHHHH---HhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEe--------CCCC
Q 024871 74 ATVPVINGLTDYNHPCQIMADALTIIE---HVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCA--------CPKG 141 (261)
Q Consensus 74 ~~vPVINa~~~~~HPtQ~L~Dl~Ti~e---~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~--------~P~~ 141 (261)
++.|+-.+++..--+.-+.-=++.+++ ++| +++|++|++.| .+||....++.+...|.+++-+ .|+|
T Consensus 169 tGkp~~~gGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~G 247 (410)
T PLN02477 169 TGKPIDLGGSLGREAATGRGVVFATEALLAEHGKSIAGQTFVIQG-FGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENG 247 (410)
T ss_pred eCCCcccCCCCCCCccchHHHHHHHHHHHHHcCCCccCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCC
Confidence 456765554432223334444555543 345 59999999999 5899999999988889988843 3677
Q ss_pred CCCCHHHHHHHHHhC-CC---eEEEEcCHHHHhCCCCEEEEec
Q 024871 142 FEPDKETVEKARKAG-IS---KIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 142 ~~~~~~~~~~~~~~g-~~---~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+.++ ++++..++.| .. ..+..++-+-...+|||++.-.
T Consensus 248 LD~~-~L~~~k~~~g~l~~~~~a~~i~~~e~l~~~~DvliP~A 289 (410)
T PLN02477 248 LDIP-ALRKHVAEGGGLKGFPGGDPIDPDDILVEPCDVLIPAA 289 (410)
T ss_pred CCHH-HHHHHHHhcCchhccccceEecCccceeccccEEeecc
Confidence 7543 3333323332 00 0111112111234788888754
No 196
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=85.23 E-value=1.4 Score=37.25 Aligned_cols=70 Identities=17% Similarity=0.281 Sum_probs=46.5
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCH--HH----HHHHHHhC----------CCeEEEEcCHHHHhCC
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDK--ET----VEKARKAG----------ISKIEITNDPKEVVQG 172 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~--~~----~~~~~~~g----------~~~i~~~~d~~~a~~~ 172 (261)
||+++|- +.+.++++..++..|.++++..+..-.... +. ++...+.| ...+.+++|++++. +
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~ 78 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D 78 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h
Confidence 6899996 889999999988999999988874322211 11 11111122 14688999999888 9
Q ss_pred CCEEEEec
Q 024871 173 ADVVYSDV 180 (261)
Q Consensus 173 aDviy~~~ 180 (261)
||+|+=-.
T Consensus 79 adlViEai 86 (180)
T PF02737_consen 79 ADLVIEAI 86 (180)
T ss_dssp ESEEEE-S
T ss_pred hheehhhc
Confidence 99988754
No 197
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=85.17 E-value=18 Score=31.89 Aligned_cols=164 Identities=18% Similarity=0.177 Sum_probs=96.4
Q ss_pred HHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhcc-EEEEeeCC-cchHHHHhhhCCCc-EEeCCCCCC---C
Q 024871 14 VSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYND-IIMARVFG-HQDILDLAKFATVP-VINGLTDYN---H 87 (261)
Q Consensus 14 ~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D-~iv~R~~~-~~~~~~~a~~~~vP-VINa~~~~~---H 87 (261)
..++..+..-|-..+.++.+. .+. ++++.+++.+++..+ +-++--+. ...+..-+.+-=+| |+|+....+ +
T Consensus 15 ~~~~~~~~~~gtdai~vGGS~-~v~--~~~~~~~~~ik~~~~~~Pvilfp~~~~~i~~~aDa~l~~svlns~n~~~i~g~ 91 (219)
T cd02812 15 EEIAKLAEESGTDAIMVGGSD-GVS--STLDNVVRLIKRIRRPVPVILFPSNPEAVSPGADAYLFPSVLNSGDPYWIIGA 91 (219)
T ss_pred HHHHHHHHhcCCCEEEECCcc-chh--hhHHHHHHHHHHhcCCCCEEEeCCCccccCcCCCEEEEEeeecCCCchHHHHH
Confidence 446666666777888886653 122 688888888888775 54443332 22232223333355 888765433 2
Q ss_pred hhHHHHHHHHH---HHHh--CC---CCCcEEEEEcCCC-----chHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH
Q 024871 88 PCQIMADALTI---IEHV--GR---LEGTKVVYVGDGN-----NIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK 154 (261)
Q Consensus 88 PtQ~L~Dl~Ti---~e~~--g~---l~~~~i~~vGd~~-----~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~ 154 (261)
--+++.-+-.+ .|-. |. =.|.+++++++.+ -.+-+.++++..+|++++..-=.+-..+.++++..++
T Consensus 92 ~~~~~~~~~~~~~~~e~i~~gYiv~~~~~~v~~v~~a~~~~~~e~~~ayA~aae~~g~~ivyLe~SG~~~~~e~I~~v~~ 171 (219)
T cd02812 92 QAEAAPEVGKIIPWLELIPEGYLVLNPDSTVARVTGAKTDLKPEDAAAYALAAEYLGMPIVYLEYSGAYGPPEVVRAVKK 171 (219)
T ss_pred HHHHHHHhccccccccccceEEEEECCCCceeeeeccCcCCCHHHHHHHHHHHHHcCCeEEEeCCCCCcCCHHHHHHHHH
Confidence 22233211110 1111 10 1356899999743 2677888899999999887763344567777777665
Q ss_pred h--C-----CCeEEEEcCHHHHhC-CCCEEEEec
Q 024871 155 A--G-----ISKIEITNDPKEVVQ-GADVVYSDV 180 (261)
Q Consensus 155 ~--g-----~~~i~~~~d~~~a~~-~aDviy~~~ 180 (261)
. + ++.|+-.++.+++++ +||.|...+
T Consensus 172 ~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 205 (219)
T cd02812 172 VLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGN 205 (219)
T ss_pred hcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 3 2 123443455677888 899999975
No 198
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.15 E-value=3.5 Score=39.46 Aligned_cols=74 Identities=24% Similarity=0.330 Sum_probs=50.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
++++++++++|-+. +..+.+..+...|.+++++.+...+.-++..+.+.+.|. .+...+..++...++|+|+..
T Consensus 2 ~~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~d~vv~~ 75 (450)
T PRK14106 2 ELKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGI-ELVLGEYPEEFLEGVDLVVVS 75 (450)
T ss_pred CcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCC-EEEeCCcchhHhhcCCEEEEC
Confidence 36899999999655 888899999999999998877542222222344445553 454444455667889977764
No 199
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=85.14 E-value=1.8 Score=39.99 Aligned_cols=117 Identities=16% Similarity=0.217 Sum_probs=58.0
Q ss_pred HhCCCCCcEEEEEcCCCchHHHHH-HHHhcCCc-EEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEE
Q 024871 101 HVGRLEGTKVVYVGDGNNIVHSWL-LMASVIPF-HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYS 178 (261)
Q Consensus 101 ~~g~l~~~~i~~vGd~~~v~~S~~-~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~ 178 (261)
.+..=+-.+++++|-+. .+...+ .++..+++ ++.+.++.. .-.+.+.+.+++.+ ..+...+|+++++++||||+|
T Consensus 122 ~La~~~~~~l~viGaG~-QA~~~~~a~~~~~~i~~v~v~~r~~-~~~~~~~~~~~~~~-~~v~~~~~~~~av~~aDii~t 198 (313)
T PF02423_consen 122 YLARPDARTLGVIGAGV-QARWHLRALAAVRPIKEVRVYSRSP-ERAEAFAARLRDLG-VPVVAVDSAEEAVRGADIIVT 198 (313)
T ss_dssp HHS-TT--EEEEE--SH-HHHHHHHHHHHHS--SEEEEE-SSH-HHHHHHHHHHHCCC-TCEEEESSHHHHHTTSSEEEE
T ss_pred HhCcCCCceEEEECCCH-HHHHHHHHHHHhCCceEEEEEccCh-hHHHHHHHhhcccc-ccceeccchhhhcccCCEEEE
Confidence 34433457999999753 333333 33445665 666666532 11233444444445 478889999999999999999
Q ss_pred ecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCC-cccccccccCC
Q 024871 179 DVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERG-VEVTEGVIEAP 236 (261)
Q Consensus 179 ~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg-~Ev~~~v~~~~ 236 (261)
-+-.. + ..|+ ++.+.+ ++++.|.+-+....+ .|++++++..-
T Consensus 199 aT~s~--~----------~~P~-~~~~~l---~~g~hi~~iGs~~~~~~El~~~~~~~a 241 (313)
T PF02423_consen 199 ATPST--T----------PAPV-FDAEWL---KPGTHINAIGSYTPGMRELDDELLKRA 241 (313)
T ss_dssp ----S--S----------EEES-B-GGGS----TT-EEEE-S-SSTTBESB-HHHHHCS
T ss_pred ccCCC--C----------CCcc-ccHHHc---CCCcEEEEecCCCCchhhcCHHHhccC
Confidence 65211 0 0022 444443 467777776653222 58888777653
No 200
>PRK10433 putative RNA methyltransferase; Provisional
Probab=85.09 E-value=4.7 Score=35.75 Aligned_cols=72 Identities=8% Similarity=0.111 Sum_probs=47.8
Q ss_pred CcEEEEEcC--CCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHHh-C-CCeEEEEcCHHHHhCCCCEEEEec
Q 024871 107 GTKVVYVGD--GNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARKA-G-ISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 107 ~~~i~~vGd--~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~-g-~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+.+|++|.. +.|+. +.+.++..||+ +++++.|+.+ ++++....+... . ....++++++++|+++++.++.++
T Consensus 2 ~i~vVLv~p~~p~NiG-aiaRam~nfG~~~L~lV~p~~~-~~~~a~~~A~gA~d~L~~a~v~~tL~eAl~d~~~vigtt 78 (228)
T PRK10433 2 RLTIILVAPARAENVG-AAARAMKTMGFSELRIVDSQAH-LEPAARWVAHGSGDILDNAKVFDTLAEALHDVDFTVATT 78 (228)
T ss_pred ceEEEEEcCCCCccHH-HHHHHHHHCCCCEEEEeCCCCC-CcHHHHHHhccHHHHhcCceEECCHHHHHHhCCeEEEEc
Confidence 367888885 45654 56677788997 8999999865 333322222211 0 234567899999999999877653
No 201
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=85.06 E-value=2.7 Score=37.95 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=46.4
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
||+++|- +++..+++..+...|.++++..+ .++..+.+.+.|. ....+++++++++|+|+.-.
T Consensus 1 ~IgvIG~-G~mG~~iA~~l~~~G~~V~~~dr-----~~~~~~~~~~~g~---~~~~~~~~~~~~aDivi~~v 63 (291)
T TIGR01505 1 KVGFIGL-GIMGSPMSINLAKAGYQLHVTTI-----GPEVADELLAAGA---VTAETARQVTEQADVIFTMV 63 (291)
T ss_pred CEEEEEe-cHHHHHHHHHHHHCCCeEEEEcC-----CHHHHHHHHHCCC---cccCCHHHHHhcCCEEEEec
Confidence 5899994 78899988888888988876643 3344455555552 34568889999999999863
No 202
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.03 E-value=4.5 Score=36.52 Aligned_cols=67 Identities=27% Similarity=0.327 Sum_probs=46.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH-----------hC----------CCeEEEEcCH
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK-----------AG----------ISKIEITNDP 166 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~-----------~g----------~~~i~~~~d~ 166 (261)
+||+++|- +.+..+++..++.-|.++++..+.. +.++.+.+ .| ...+..++++
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 75 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGFQTTLVDIKQ-----EQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDL 75 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCCcEEEEeCCH-----HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcH
Confidence 47999995 7888888888888788888775432 22222211 11 0236678899
Q ss_pred HHHhCCCCEEEEec
Q 024871 167 KEVVQGADVVYSDV 180 (261)
Q Consensus 167 ~~a~~~aDviy~~~ 180 (261)
++++++||+|+.-.
T Consensus 76 ~~~~~~aD~Vi~av 89 (288)
T PRK09260 76 KAAVADADLVIEAV 89 (288)
T ss_pred HHhhcCCCEEEEec
Confidence 99999999999764
No 203
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=84.95 E-value=5.3 Score=34.52 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=29.0
Q ss_pred CCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCCc
Q 024871 171 QGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERGV 226 (261)
Q Consensus 171 ~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg~ 226 (261)
.++|+++.-.| .+.+.+++++..+..++=+|| ||.+||.
T Consensus 79 ~~~D~iv~~~~-----------------~~ii~~~~l~~~~~~~iNiHpslLP~yrG~ 119 (200)
T PRK05647 79 YQPDLVVLAGF-----------------MRILGPTFVSAYEGRIINIHPSLLPSFPGL 119 (200)
T ss_pred hCcCEEEhHHh-----------------hhhCCHHHHhhccCCEEEEeCccccCCCCc
Confidence 35787777543 245788888877778899999 8998864
No 204
>PTZ00117 malate dehydrogenase; Provisional
Probab=84.91 E-value=5.5 Score=36.84 Aligned_cols=74 Identities=18% Similarity=0.118 Sum_probs=45.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCC-cEEEEeCCCCCCCCHHHHHHHH--H-hCC-CeEEEEcCHHHHhCCCCEEEEe
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIP-FHFVCACPKGFEPDKETVEKAR--K-AGI-SKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g-~~~~~~~P~~~~~~~~~~~~~~--~-~g~-~~i~~~~d~~~a~~~aDviy~~ 179 (261)
.+.+||+++|. +++..+.+..+...| .++++.-.+.-......++... . .+. .+++.+.|.+ ++++||+|+..
T Consensus 3 ~~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVit 80 (319)
T PTZ00117 3 VKRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVIT 80 (319)
T ss_pred CCCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEEC
Confidence 45789999995 778888777766666 5777776543222222222211 1 121 2455456766 89999999886
Q ss_pred c
Q 024871 180 V 180 (261)
Q Consensus 180 ~ 180 (261)
.
T Consensus 81 a 81 (319)
T PTZ00117 81 A 81 (319)
T ss_pred C
Confidence 4
No 205
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=84.91 E-value=17 Score=31.86 Aligned_cols=86 Identities=23% Similarity=0.259 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCc---EEEEeCCCCCC---C----CHHHHHHHHHhCCCeE
Q 024871 92 MADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPF---HFVCACPKGFE---P----DKETVEKARKAGISKI 160 (261)
Q Consensus 92 L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~---~~~~~~P~~~~---~----~~~~~~~~~~~g~~~i 160 (261)
|+=++.-.+..| ++++.|++++|- +......+..+...|+ +++++--.++- - .+...+.+++.+...
T Consensus 9 lAG~~~al~~~g~~l~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~- 86 (226)
T cd05311 9 LAGLLNALKLVGKKIEEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK- 86 (226)
T ss_pred HHHHHHHHHHhCCCccCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc-
Confidence 444555555666 599999999997 4444444444445576 47777665432 1 112223344443111
Q ss_pred EEEcCHHHHhCCCCEEEEec
Q 024871 161 EITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 161 ~~~~d~~~a~~~aDviy~~~ 180 (261)
...++.++++++|+|+..+
T Consensus 87 -~~~~l~~~l~~~dvlIgaT 105 (226)
T cd05311 87 -TGGTLKEALKGADVFIGVS 105 (226)
T ss_pred -ccCCHHHHHhcCCEEEeCC
Confidence 1236778999999999875
No 206
>PRK07340 ornithine cyclodeaminase; Validated
Probab=84.83 E-value=3.6 Score=37.80 Aligned_cols=114 Identities=11% Similarity=0.070 Sum_probs=64.3
Q ss_pred HHhCCCCCcEEEEEcCCCchHHHHHHHHh-cCCc-EEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEE
Q 024871 100 EHVGRLEGTKVVYVGDGNNIVHSWLLMAS-VIPF-HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVY 177 (261)
Q Consensus 100 e~~g~l~~~~i~~vGd~~~v~~S~~~~~~-~~g~-~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy 177 (261)
+++...+.++++++|- +..+...+.++. ..+. ++.+..+. ..-.+.+.++.+..+. .+. .++.+++++++|+|+
T Consensus 118 ~~La~~~~~~v~IiGa-G~qa~~~~~al~~~~~~~~v~v~~r~-~~~a~~~a~~~~~~~~-~~~-~~~~~~av~~aDiVi 193 (304)
T PRK07340 118 RTLAPAPPGDLLLIGT-GVQARAHLEAFAAGLPVRRVWVRGRT-AASAAAFCAHARALGP-TAE-PLDGEAIPEAVDLVV 193 (304)
T ss_pred HHhCCCCCCEEEEECC-cHHHHHHHHHHHHhCCCCEEEEEcCC-HHHHHHHHHHHHhcCC-eeE-ECCHHHHhhcCCEEE
Confidence 4567788899999997 445555544442 3564 56666543 1112223333333332 333 578999999999999
Q ss_pred EecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCC-CcccccccccCC
Q 024871 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAER-GVEVTEGVIEAP 236 (261)
Q Consensus 178 ~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~r-g~Ev~~~v~~~~ 236 (261)
+.+-.+ + .-++.. .+|.+.+..-+.-.. -.|++++++..-
T Consensus 194 taT~s~----~-----------Pl~~~~----~~~g~hi~~iGs~~p~~~El~~~~~~~a 234 (304)
T PRK07340 194 TATTSR----T-----------PVYPEA----ARAGRLVVAVGAFTPDMAELAPRTVRGS 234 (304)
T ss_pred EccCCC----C-----------ceeCcc----CCCCCEEEecCCCCCCcccCCHHHHhhC
Confidence 975211 0 112221 246666666653222 257777777754
No 207
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=84.78 E-value=3.4 Score=37.20 Aligned_cols=64 Identities=22% Similarity=0.180 Sum_probs=45.4
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
||++|| .+++.-|++..+...|.+++.+.+ .++..+.+++.|.. ...+++. ++++++|+|+.-.
T Consensus 2 ~I~IIG-~G~mG~sla~~L~~~g~~V~~~d~-----~~~~~~~a~~~g~~-~~~~~~~-~~~~~aDlVilav 65 (279)
T PRK07417 2 KIGIVG-LGLIGGSLGLDLRSLGHTVYGVSR-----RESTCERAIERGLV-DEASTDL-SLLKDCDLVILAL 65 (279)
T ss_pred eEEEEe-ecHHHHHHHHHHHHCCCEEEEEEC-----CHHHHHHHHHCCCc-ccccCCH-hHhcCCCEEEEcC
Confidence 799999 578999999988888888776654 34555666666631 1233444 5789999998864
No 208
>PRK06823 ornithine cyclodeaminase; Validated
Probab=84.44 E-value=5 Score=37.15 Aligned_cols=76 Identities=17% Similarity=0.160 Sum_probs=46.1
Q ss_pred hCCCCCcEEEEEcCCCchHHHHHHH-HhcCCc-EEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 102 VGRLEGTKVVYVGDGNNIVHSWLLM-ASVIPF-HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 102 ~g~l~~~~i~~vGd~~~v~~S~~~~-~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
+..=+-++++++|-+ ..+.+.+++ +..++. ++.+..+.. +-.+.+.+++++.+ ..++..++.++++++||||.|.
T Consensus 123 La~~d~~~l~iiG~G-~qA~~~~~a~~~v~~i~~v~v~~r~~-~~a~~~~~~~~~~~-~~v~~~~~~~~av~~ADIV~ta 199 (315)
T PRK06823 123 LAPQHVSAIGIVGTG-IQARMQLMYLKNVTDCRQLWVWGRSE-TALEEYRQYAQALG-FAVNTTLDAAEVAHAANLIVTT 199 (315)
T ss_pred hcCCCCCEEEEECCc-HHHHHHHHHHHhcCCCCEEEEECCCH-HHHHHHHHHHHhcC-CcEEEECCHHHHhcCCCEEEEe
Confidence 333356899999974 334443332 334454 555555431 11223334444445 3677789999999999999997
Q ss_pred c
Q 024871 180 V 180 (261)
Q Consensus 180 ~ 180 (261)
+
T Consensus 200 T 200 (315)
T PRK06823 200 T 200 (315)
T ss_pred c
Confidence 5
No 209
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=84.04 E-value=3.6 Score=37.80 Aligned_cols=72 Identities=18% Similarity=0.160 Sum_probs=44.2
Q ss_pred CCcEEEEEcCCCchHHHHHHH-HhcCCc-EEEEeCCCCCCCCHHHHHHHHHh-CCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 106 EGTKVVYVGDGNNIVHSWLLM-ASVIPF-HFVCACPKGFEPDKETVEKARKA-GISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~-~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~-g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+-.+++++|-+ .-+.+.+.+ +..+++ ++.+..+.. .-.+.+.+..++. | ..++..+++++++++||||.|-+
T Consensus 116 da~~l~iiGaG-~QA~~~~~a~~~v~~i~~v~v~~r~~-~~a~~f~~~~~~~~~-~~v~~~~~~~eav~~aDIV~taT 190 (301)
T PRK06407 116 NVENFTIIGSG-FQAETQLEGMASVYNPKRIRVYSRNF-DHARAFAERFSKEFG-VDIRPVDNAEAALRDADTITSIT 190 (301)
T ss_pred CCcEEEEECCc-HHHHHHHHHHHhcCCCCEEEEECCCH-HHHHHHHHHHHHhcC-CcEEEeCCHHHHHhcCCEEEEec
Confidence 46899999974 333333333 234565 555555432 1112233333333 4 36888899999999999999965
No 210
>PRK06545 prephenate dehydrogenase; Validated
Probab=84.01 E-value=3.1 Score=38.99 Aligned_cols=68 Identities=21% Similarity=0.161 Sum_probs=45.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
++|++|| .+++..|++..+...|.++.+..+. +.......+...|. .-..+++++++++++|+|+.-.
T Consensus 1 ~~I~iIG-~GliG~siA~~L~~~G~~v~i~~~~---~~~~~~~~a~~~~~-~~~~~~~~~~~~~~aDlVilav 68 (359)
T PRK06545 1 RTVLIVG-LGLIGGSLALAIKAAGPDVFIIGYD---PSAAQLARALGFGV-IDELAADLQRAAAEADLIVLAV 68 (359)
T ss_pred CeEEEEE-eCHHHHHHHHHHHhcCCCeEEEEeC---CCHHHHHHHhcCCC-CcccccCHHHHhcCCCEEEEeC
Confidence 4799998 4889999999998888766655432 22222222222332 1123567889999999998864
No 211
>PRK07589 ornithine cyclodeaminase; Validated
Probab=83.99 E-value=4.9 Score=37.81 Aligned_cols=76 Identities=14% Similarity=0.203 Sum_probs=45.6
Q ss_pred hCCCCCcEEEEEcCCCchHHHHHH-HHhcCCc-EEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 102 VGRLEGTKVVYVGDGNNIVHSWLL-MASVIPF-HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 102 ~g~l~~~~i~~vGd~~~v~~S~~~-~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
+..-+-.+++++|-+ ..+.+.++ .+..+++ ++++..+. .+-.+.+.+.+++.| ..+...+|+++++++||||.|-
T Consensus 124 Lar~da~~l~iiGaG-~QA~~~l~a~~~vr~i~~V~v~~r~-~~~a~~~~~~~~~~~-~~v~~~~~~~~av~~ADIIvta 200 (346)
T PRK07589 124 LARPDSRTMALIGNG-AQSEFQALAFKALLGIEEIRLYDID-PAATAKLARNLAGPG-LRIVACRSVAEAVEGADIITTV 200 (346)
T ss_pred hccCCCcEEEEECCc-HHHHHHHHHHHHhCCceEEEEEeCC-HHHHHHHHHHHHhcC-CcEEEeCCHHHHHhcCCEEEEe
Confidence 333345889999974 34444433 2334565 45555432 111223333444444 3577789999999999999996
Q ss_pred c
Q 024871 180 V 180 (261)
Q Consensus 180 ~ 180 (261)
+
T Consensus 201 T 201 (346)
T PRK07589 201 T 201 (346)
T ss_pred c
Confidence 5
No 212
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=83.71 E-value=7.6 Score=36.01 Aligned_cols=100 Identities=19% Similarity=0.193 Sum_probs=59.3
Q ss_pred cEEEEEcCCCchHHHHHHHHh-cCCcEEEEeCCCC-----CCC-CHHHHHHHHHhCCCeEEEEcC-----HHHHhC--CC
Q 024871 108 TKVVYVGDGNNIVHSWLLMAS-VIPFHFVCACPKG-----FEP-DKETVEKARKAGISKIEITND-----PKEVVQ--GA 173 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~-~~g~~~~~~~P~~-----~~~-~~~~~~~~~~~g~~~i~~~~d-----~~~a~~--~a 173 (261)
+||+|+|-..--+.++-.++. .+..--++..|+. ..+ ...+...|.++|+. +..-++ ..+.++ ++
T Consensus 2 mkivF~GTp~fa~~~L~~L~~~~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ip-v~qP~~l~~~e~~~~l~~l~~ 80 (307)
T COG0223 2 MRIVFFGTPEFAVPSLEALIEAGHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIP-VFQPEKLNDPEFLEELAALDP 80 (307)
T ss_pred cEEEEEcCchhhHHHHHHHHhCCCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCc-eeccccCCcHHHHHHHhccCC
Confidence 689999976555555543333 2443333444532 111 23455567777742 221111 223333 57
Q ss_pred CEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCC
Q 024871 174 DVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERG 225 (261)
Q Consensus 174 Dviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg 225 (261)
|++++-.| |+ .+.+++++..+-.++=+|+ ||++||
T Consensus 81 D~ivvvay---G~--------------ilp~~iL~~~~~G~iNvH~SLLPr~RG 117 (307)
T COG0223 81 DLIVVVAY---GQ--------------ILPKEILDLPPYGCINLHPSLLPRYRG 117 (307)
T ss_pred CEEEEEeh---hh--------------hCCHHHHhcCcCCeEEecCccCccccC
Confidence 88888642 32 3788999988888999999 899985
No 213
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.71 E-value=5.4 Score=35.81 Aligned_cols=74 Identities=18% Similarity=0.220 Sum_probs=47.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCC------HHHHHHHHHhCC----------CeEEEEcCHHHHhC
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPD------KETVEKARKAGI----------SKIEITNDPKEVVQ 171 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~------~~~~~~~~~~g~----------~~i~~~~d~~~a~~ 171 (261)
.||++||- +.+..+++..++..|.++++..+..-... ++.++.+.+.|. ..+..+.|.+ .++
T Consensus 4 ~kI~VIG~-G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~ 81 (282)
T PRK05808 4 QKIGVIGA-GTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLK 81 (282)
T ss_pred cEEEEEcc-CHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhc
Confidence 57999995 88999998888888988887754321110 001122223331 2466777875 589
Q ss_pred CCCEEEEecccC
Q 024871 172 GADVVYSDVWAS 183 (261)
Q Consensus 172 ~aDviy~~~w~~ 183 (261)
+||+|+-...++
T Consensus 82 ~aDlVi~av~e~ 93 (282)
T PRK05808 82 DADLVIEAATEN 93 (282)
T ss_pred cCCeeeeccccc
Confidence 999999876433
No 214
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=83.71 E-value=3.3 Score=38.35 Aligned_cols=66 Identities=21% Similarity=0.329 Sum_probs=45.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
...+|.|+| ++++....+.=+-+.|.++++.- ...+..+..++.| + ++.++|.|..+++|||+|-.
T Consensus 34 s~~~iGFIG-LG~MG~~M~~nLik~G~kVtV~d-----r~~~k~~~f~~~G-a--~v~~sPaeVae~sDvvitmv 99 (327)
T KOG0409|consen 34 SKTRIGFIG-LGNMGSAMVSNLIKAGYKVTVYD-----RTKDKCKEFQEAG-A--RVANSPAEVAEDSDVVITMV 99 (327)
T ss_pred ccceeeEEe-eccchHHHHHHHHHcCCEEEEEe-----CcHHHHHHHHHhc-h--hhhCCHHHHHhhcCEEEEEc
Confidence 468999999 45555555544556687776542 3333344455666 3 56789999999999999964
No 215
>PRK05442 malate dehydrogenase; Provisional
Probab=83.43 E-value=9.4 Score=35.57 Aligned_cols=74 Identities=19% Similarity=0.127 Sum_probs=42.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCC-------cEEEEeCCC-CC-CCCHHHHHHHHHh-C-CCeEEEEcCHHHHhCCCCE
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIP-------FHFVCACPK-GF-EPDKETVEKARKA-G-ISKIEITNDPKEVVQGADV 175 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g-------~~~~~~~P~-~~-~~~~~~~~~~~~~-g-~~~i~~~~d~~~a~~~aDv 175 (261)
-+||+++|-.++|..+.+..+...+ .++++.--+ .. ......+|..... . ..++.++.+..+.++|||+
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDi 83 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADV 83 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCE
Confidence 4799999976888887766554322 256655421 11 1222222222211 0 1234566677899999999
Q ss_pred EEEec
Q 024871 176 VYSDV 180 (261)
Q Consensus 176 iy~~~ 180 (261)
|+.+.
T Consensus 84 VVita 88 (326)
T PRK05442 84 ALLVG 88 (326)
T ss_pred EEEeC
Confidence 88753
No 216
>PLN02602 lactate dehydrogenase
Probab=83.30 E-value=14 Score=34.85 Aligned_cols=71 Identities=20% Similarity=0.121 Sum_probs=43.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCc--EEEEeCCCCCCCCHHHHHHHHHh---CCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPF--HFVCACPKGFEPDKETVEKARKA---GISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~~---g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+++|- ++|..+++..+...+. +++++-...-......+|..... +...+..+.|.+ .++|||+|+.+.
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~-~~~daDiVVitA 113 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYA-VTAGSDLCIVTA 113 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHH-HhCCCCEEEECC
Confidence 69999995 8888888776665553 67777654322333333332221 212333334544 599999998873
No 217
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=83.22 E-value=6.7 Score=35.45 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=45.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCH------HHHHHHHHhCC----------CeEEEEcCHHHHhC
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDK------ETVEKARKAGI----------SKIEITNDPKEVVQ 171 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~------~~~~~~~~~g~----------~~i~~~~d~~~a~~ 171 (261)
+||++||- +++..+++..+...|.++++..+..-.... ..++.+.+.|. +.+..+++. ++++
T Consensus 5 ~~V~vIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (295)
T PLN02545 5 KKVGVVGA-GQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELR 82 (295)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhC
Confidence 68999995 889999998888889888877653211110 00011212221 134556665 5789
Q ss_pred CCCEEEEec
Q 024871 172 GADVVYSDV 180 (261)
Q Consensus 172 ~aDviy~~~ 180 (261)
+||+|+.-.
T Consensus 83 ~aD~Vieav 91 (295)
T PLN02545 83 DADFIIEAI 91 (295)
T ss_pred CCCEEEEcC
Confidence 999999875
No 218
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=83.21 E-value=17 Score=34.92 Aligned_cols=153 Identities=12% Similarity=0.056 Sum_probs=86.5
Q ss_pred HHHhcCCeEEEeCCCCc------------CCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCC-CC
Q 024871 19 GFSLLGGHAIYLGPDDI------------QMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLT-DY 85 (261)
Q Consensus 19 A~~~LGg~~~~l~~~~s------------~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~-~~ 85 (261)
=...+|.+++.+.+-+. ....|-+++|..+.=++-+.+++ ........+.+.+.-++|.+.... -.
T Consensus 179 lL~~~Gl~v~~l~d~s~~~d~~~~~~~~~~~~ggt~leei~~~~~A~lniv~-~~~~~~~a~~Lee~~GiP~~~~~~p~G 257 (417)
T cd01966 179 IIEAFGLEPIILPDLSGSLDGHLADDWSPTTTGGTTLEDIRQMGRSAATLAI-GESMRKAAEALEERTGVPYYVFPSLTG 257 (417)
T ss_pred HHHHcCCceEEecCcccccCCCCCCCccccCCCCCcHHHHHhhccCeEEEEE-CHHHHHHHHHHHHHHCCCeeecCCCcc
Confidence 34578999987643211 12357788888887666677765 323334566777778899877521 11
Q ss_pred CCh----hHHHHHHHH------HHHH-----------hCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeC-CCCCC
Q 024871 86 NHP----CQIMADALT------IIEH-----------VGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCAC-PKGFE 143 (261)
Q Consensus 86 ~HP----tQ~L~Dl~T------i~e~-----------~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~-P~~~~ 143 (261)
.+- -+.|++++- +.++ ...+.|+|+++.||. ..+.++...+.-+|+++..+. +.+
T Consensus 258 ~~~T~~~L~~la~~~g~~~~~~i~~er~~~~~~~~d~~~~l~gkrvai~~~~-~~~~~l~~~L~ElG~~~~~~~~~~~-- 334 (417)
T cd01966 258 LEAVDALIATLAKLSGRPVPEKIRRQRAQLQDAMLDGHFYLGGKRVAIALEP-DLLAALSSFLAEMGAEIVAAVATTD-- 334 (417)
T ss_pred hHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHhCCcEEEEEeCH-HHHHHHHHHHHHCCCEEEEEEECCC--
Confidence 111 122222221 1111 123679999999984 456777777778899875443 322
Q ss_pred CCHHHHHHHHHhCCCeEEEEcCH---HHHhCCCCEEEEecc
Q 024871 144 PDKETVEKARKAGISKIEITNDP---KEVVQGADVVYSDVW 181 (261)
Q Consensus 144 ~~~~~~~~~~~~g~~~i~~~~d~---~~a~~~aDviy~~~w 181 (261)
.++ .+.. ....+ +..|+ ++.+++.|+++...|
T Consensus 335 -~~~-~~~~---~~~~~-~~~D~~~~e~~~~~~dllig~s~ 369 (417)
T cd01966 335 -SPA-LEKL---PAEEV-VVGDLEDLEDLAAEADLLVTNSH 369 (417)
T ss_pred -CHH-HHhC---cccce-EeCCHHHHHHhcccCCEEEEcch
Confidence 111 1111 11122 23454 456777999998865
No 219
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=83.18 E-value=7.4 Score=33.85 Aligned_cols=67 Identities=10% Similarity=0.248 Sum_probs=43.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhcCC---cE-EEEeCCCCCCCCHHHHHHHH-HhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASVIP---FH-FVCACPKGFEPDKETVEKAR-KAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~~g---~~-~~~~~P~~~~~~~~~~~~~~-~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
++.||+++|- +++.++++..+..-| .+ ++...+. .++..+.+. +.| +..+.|.+++++++|+|+...
T Consensus 3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~DiViiav 74 (245)
T PRK07634 3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRS----NVEKLDQLQARYN---VSTTTDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCC----CHHHHHHHHHHcC---cEEeCChHHHHhcCCEEEEec
Confidence 4679999994 788888877654443 33 5445432 122233333 344 345678899999999998875
No 220
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=83.16 E-value=27 Score=29.96 Aligned_cols=67 Identities=21% Similarity=0.150 Sum_probs=45.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH-HhCCCeEEEEcCHHHHh-CCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR-KAGISKIEITNDPKEVV-QGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~-~~g~~~i~~~~d~~~a~-~~aDviy~~~ 180 (261)
+++|++|+++|= +++...++..+...|.+++++... ++-++.+. ..|. +..+. ++.. .++|++..-.
T Consensus 25 ~l~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~-----~~~~~~~~~~~g~---~~v~~-~~l~~~~~Dv~vp~A 93 (200)
T cd01075 25 SLEGKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADIN-----EEAVARAAELFGA---TVVAP-EEIYSVDADVFAPCA 93 (200)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCC-----HHHHHHHHHHcCC---EEEcc-hhhccccCCEEEecc
Confidence 589999999996 589999999999999999865432 33333333 3352 22323 4444 3899998653
No 221
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=83.11 E-value=41 Score=31.53 Aligned_cols=129 Identities=12% Similarity=0.208 Sum_probs=78.4
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeE------EEeCCCCcCCCCCCCHHHHHHHHhh-hcc-EEEEeeCCc----chHH
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHA------IYLGPDDIQMGKREETRDAARVLCR-YND-IIMARVFGH----QDIL 68 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~------~~l~~~~s~~~kgEs~~Dt~~~ls~-~~D-~iv~R~~~~----~~~~ 68 (261)
++.||.+.+-+-+.+|+-|+.+..-.. ..+.+..-.+....|.. +.+.++. +.+ +..+=.+.. .++.
T Consensus 2 iG~if~~~~~~~~~af~~a~~~~n~~~~~~~~~~~l~~~~~~~~~~dsf~-~~~~~C~~~~~gV~AI~Gp~ss~~~~~v~ 80 (371)
T cd06388 2 IGGLFIRNTDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFA-VTNAFCSQYSRGVFAIFGLYDKRSVHTLT 80 (371)
T ss_pred CceeecCCchHHHHHHHHHHHHhhccccccccceEEeeeeeecCCCChhH-HHHHHHHHHhCCceEEEecCCHHHHHHHH
Confidence 578999888888899999999987543 23333333344455544 3344444 343 444433332 2456
Q ss_pred HHhhhCCCcEEeCCCC---------CCChhH--HHHHHHHHHHHhCCCCCcEEEEEcCCC---chHHHHHHHHhcCCcEE
Q 024871 69 DLAKFATVPVINGLTD---------YNHPCQ--IMADALTIIEHVGRLEGTKVVYVGDGN---NIVHSWLLMASVIPFHF 134 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~---------~~HPtQ--~L~Dl~Ti~e~~g~l~~~~i~~vGd~~---~v~~S~~~~~~~~g~~~ 134 (261)
.+++..+||.|-...+ ..||.+ +++| +.++ ++.+|++++-|.+ ..+..+...+...|.++
T Consensus 81 ~i~~~~~IP~I~~~~~~~~~~~f~i~~~p~~~~a~~~---~i~~---~~wk~vaiiYd~~~~~~~lq~l~~~~~~~g~~v 154 (371)
T cd06388 81 SFCSALHISLITPSFPTEGESQFVLQLRPSLRGALLS---LLDH---YEWNRFVFLYDTDRGYSILQAIMEKAGQNGWQV 154 (371)
T ss_pred HHhhCCCCCeeecCccccCCCceEEEeChhhhhHHHH---HHHh---cCceEEEEEecCCccHHHHHHHHHhhHhcCCee
Confidence 7788899999964211 125553 3444 3444 4588899888743 25666777777778776
Q ss_pred EE
Q 024871 135 VC 136 (261)
Q Consensus 135 ~~ 136 (261)
+.
T Consensus 155 ~~ 156 (371)
T cd06388 155 SA 156 (371)
T ss_pred ee
Confidence 54
No 222
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=83.08 E-value=6.7 Score=36.34 Aligned_cols=75 Identities=15% Similarity=0.171 Sum_probs=45.6
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHh-cCCc-EEEEeCCCCCCCCHHHHHHHHH-hCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 103 GRLEGTKVVYVGDGNNIVHSWLLMAS-VIPF-HFVCACPKGFEPDKETVEKARK-AGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 103 g~l~~~~i~~vGd~~~v~~S~~~~~~-~~g~-~~~~~~P~~~~~~~~~~~~~~~-~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
..-+.++++++|- +..+...+.++. ..++ ++++.... ..-.+.+.+.+++ .| ..+...+|++++++++|+|++-
T Consensus 125 a~~~~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~-~~~a~~~a~~~~~~~g-~~v~~~~~~~~av~~aDiVvta 201 (326)
T TIGR02992 125 AREDSSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARD-SAKAEALALQLSSLLG-IDVTAATDPRAAMSGADIIVTT 201 (326)
T ss_pred CCCCCcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCC-HHHHHHHHHHHHhhcC-ceEEEeCCHHHHhccCCEEEEe
Confidence 3446689999997 444444444443 4575 56666542 1112233333322 24 3566678999999999999997
Q ss_pred c
Q 024871 180 V 180 (261)
Q Consensus 180 ~ 180 (261)
+
T Consensus 202 T 202 (326)
T TIGR02992 202 T 202 (326)
T ss_pred c
Confidence 5
No 223
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=82.96 E-value=4.8 Score=36.61 Aligned_cols=64 Identities=11% Similarity=0.146 Sum_probs=46.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+++| .+++..+++..+...|.++++..+ .++..+.+.+.|. ....++.++++++|+|++-.
T Consensus 2 ~~Ig~IG-lG~mG~~mA~~l~~~G~~V~v~d~-----~~~~~~~~~~~g~---~~~~s~~~~~~~aDvVi~~v 65 (296)
T PRK15461 2 AAIAFIG-LGQMGSPMASNLLKQGHQLQVFDV-----NPQAVDALVDKGA---TPAASPAQAAAGAEFVITML 65 (296)
T ss_pred CeEEEEe-eCHHHHHHHHHHHHCCCeEEEEcC-----CHHHHHHHHHcCC---cccCCHHHHHhcCCEEEEec
Confidence 3799999 478888888888788888776644 3333444555552 35678899999999998753
No 224
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=82.76 E-value=2.9 Score=40.63 Aligned_cols=70 Identities=27% Similarity=0.451 Sum_probs=42.6
Q ss_pred CCcEEEEEcCCC-chHHHH---HHHHhcCCc-EEEEeCCCCCCCCHHHHH--------HHHHhCC-CeEEEEcCHHHHhC
Q 024871 106 EGTKVVYVGDGN-NIVHSW---LLMASVIPF-HFVCACPKGFEPDKETVE--------KARKAGI-SKIEITNDPKEVVQ 171 (261)
Q Consensus 106 ~~~~i~~vGd~~-~v~~S~---~~~~~~~g~-~~~~~~P~~~~~~~~~~~--------~~~~~g~-~~i~~~~d~~~a~~ 171 (261)
++.||+++|.++ .+.-.+ +.....++. ++.+. .++++-.+ ..++.|. .+++.+.|+++|++
T Consensus 2 ~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~-----Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~ 76 (442)
T COG1486 2 KKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALY-----DIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALE 76 (442)
T ss_pred CcceEEEECCCccccHHHHHHHHhcCccCCcceEEEE-----eCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhc
Confidence 467999999874 343333 333333443 55443 23332222 2234453 35788999999999
Q ss_pred CCCEEEEec
Q 024871 172 GADVVYSDV 180 (261)
Q Consensus 172 ~aDviy~~~ 180 (261)
+||+|++.-
T Consensus 77 gAdfVi~~~ 85 (442)
T COG1486 77 GADFVITQI 85 (442)
T ss_pred CCCEEEEEE
Confidence 999999964
No 225
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=82.23 E-value=7.4 Score=36.61 Aligned_cols=115 Identities=18% Similarity=0.208 Sum_probs=72.0
Q ss_pred HhhhccEEEEee-CCcchHHHHhhhCCCcEEeCCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHh
Q 024871 50 LCRYNDIIMARV-FGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMAS 128 (261)
Q Consensus 50 ls~~~D~iv~R~-~~~~~~~~~a~~~~vPVINa~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~ 128 (261)
-.+|++-+++.. +.-...+.+.-..-.|+..|+...++|. ++.+--.|.+|+++|=+ .+.|.-+..+.
T Consensus 119 ~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~y~al----------k~~~~~pG~~V~I~G~G-GlGh~avQ~Ak 187 (339)
T COG1064 119 DGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRAL----------KKANVKPGKWVAVVGAG-GLGHMAVQYAK 187 (339)
T ss_pred cCcceeEEEEchHHeEECCCCCChhhhhhhhcCeeeEeeeh----------hhcCCCCCCEEEEECCc-HHHHHHHHHHH
Confidence 355777666652 1111112222222347777877778886 23233458999999975 89999999999
Q ss_pred cCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEE--cCHHHHhCC-CCEEEEec
Q 024871 129 VIPFHFVCACPKGFEPDKETVEKARKAGISKIEIT--NDPKEVVQG-ADVVYSDV 180 (261)
Q Consensus 129 ~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~--~d~~~a~~~-aDviy~~~ 180 (261)
.+|++++.++- .++-++.+++.|...+.-+ .|.-+++++ +|+|+-+.
T Consensus 188 a~ga~Via~~~-----~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv 237 (339)
T COG1064 188 AMGAEVIAITR-----SEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV 237 (339)
T ss_pred HcCCeEEEEeC-----ChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC
Confidence 99999887753 3445567888884333222 233334433 99999885
No 226
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel
Probab=82.05 E-value=17 Score=34.87 Aligned_cols=130 Identities=14% Similarity=0.086 Sum_probs=81.7
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeC-----CCCcCCCCCCCHHHHHHHHhhhc-cEEEEeeCCcc----hHHHH
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLG-----PDDIQMGKREETRDAARVLCRYN-DIIMARVFGHQ----DILDL 70 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~-----~~~s~~~kgEs~~Dt~~~ls~~~-D~iv~R~~~~~----~~~~~ 70 (261)
+|.||.+.+..-+.+|+.|+.+.--..-.+. +..-....+.+..=+....+.+. +++.|=.+... .+..+
T Consensus 2 iG~if~~~~~~~~~af~~Av~~~N~~~~~l~~~~L~~~~~~~~~~d~F~~~~~ac~l~~~gV~AI~Gp~s~~~a~~v~si 81 (400)
T cd06392 2 IGAIFEENAAKDDRVFQLAVSDLSLNDDILQSEKITYSIKSIEANNPFQAVQEACDLMTQGILALVTSTGCASANALQSL 81 (400)
T ss_pred eeeccCCCchHHHHHHHHHHHHhccCccccCCceEEEEEEecCCCChhHHHHHHHHHHhcCeEEEECCCchhHHHHHHHH
Confidence 5789999888999999999999864432211 11113456777777777766674 56666555443 35677
Q ss_pred hhhCCCcEEeC-CC-----------------C----CCChh----HHHHHHHHHHHHhCCCCCcEEEEEcCC---CchHH
Q 024871 71 AKFATVPVING-LT-----------------D----YNHPC----QIMADALTIIEHVGRLEGTKVVYVGDG---NNIVH 121 (261)
Q Consensus 71 a~~~~vPVINa-~~-----------------~----~~HPt----Q~L~Dl~Ti~e~~g~l~~~~i~~vGd~---~~v~~ 121 (261)
+....||.|-- .. . .-||+ +|++|+. ++ +++.+++++-|. .+.+.
T Consensus 82 c~~l~VP~is~~~~~~~~~~~~~~~~p~~~~~~~~~~lrp~~~~~~Ai~dlV---~~---~~W~~v~~iYD~d~gl~~lq 155 (400)
T cd06392 82 TDAMHIPHLFVQRNSGGSPRTACHLNPSPEGEEYTLAARPPVRLNDVMLKLV---TE---LRWQKFIVFYDSEYDIRGLQ 155 (400)
T ss_pred hccCcCCcEeecccccccccccccCCCCcCcCceeEEecCchHHHHHHHHHH---Hh---CCCcEEEEEEECcccHHHHH
Confidence 78889998882 21 0 12444 4555554 33 346777766663 34666
Q ss_pred HHHHHHhcCCcEEEE
Q 024871 122 SWLLMASVIPFHFVC 136 (261)
Q Consensus 122 S~~~~~~~~g~~~~~ 136 (261)
.+...+...+.++.+
T Consensus 156 ~L~~~~~~~~~~I~~ 170 (400)
T cd06392 156 SFLDQASRLGLDVSL 170 (400)
T ss_pred HHHHHHhhcCceEEE
Confidence 777777776665543
No 227
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=81.96 E-value=17 Score=33.01 Aligned_cols=63 Identities=19% Similarity=0.142 Sum_probs=44.6
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCC---CCEEEEec
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQG---ADVVYSDV 180 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~---aDviy~~~ 180 (261)
+|++|| .+++...++..+...|.++++.. ..++..+.+++.| ...++++++++++ +|+|.+-.
T Consensus 2 ~Ig~IG-lG~mG~~mA~~L~~~g~~v~v~d-----r~~~~~~~~~~~g---~~~~~s~~~~~~~~~~advVi~~v 67 (299)
T PRK12490 2 KLGLIG-LGKMGGNMAERLREDGHEVVGYD-----VNQEAVDVAGKLG---ITARHSLEELVSKLEAPRTIWVMV 67 (299)
T ss_pred EEEEEc-ccHHHHHHHHHHHhCCCEEEEEE-----CCHHHHHHHHHCC---CeecCCHHHHHHhCCCCCEEEEEe
Confidence 799999 57888888888778888877553 3344445555555 3567889998876 58887753
No 228
>PRK15114 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional
Probab=81.91 E-value=9.6 Score=34.06 Aligned_cols=71 Identities=17% Similarity=0.218 Sum_probs=48.6
Q ss_pred CCcEEEEEcC--CCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHHhCC----CeEEEEcCHHHHhCCCCEEEE
Q 024871 106 EGTKVVYVGD--GNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARKAGI----SKIEITNDPKEVVQGADVVYS 178 (261)
Q Consensus 106 ~~~~i~~vGd--~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~g~----~~i~~~~d~~~a~~~aDviy~ 178 (261)
.+.+|+.++. +.|+. +.+.++..||+ .++++.|.... .++.+. ...|. ....+++++++++++++.+|.
T Consensus 3 ~~i~vVLv~~~~pgNiG-aiaRa~~~fG~~~l~lv~p~~~~-~~~a~~--~a~GA~~~l~~a~i~~~l~eal~~~~~vva 78 (245)
T PRK15114 3 QNIRIVLVETSHTGNMG-SVARAMKTMGLTNLWLVNPLVKP-DSQAIA--LAAGASDVIGNATIVDTLDEALAGCSLVVG 78 (245)
T ss_pred CCeEEEEeCCCCCCcHH-HHHHHHHhcCCCEEEEeCCCCCC-cCHHHH--HcCCchhhcccCeEecCHHHHHhcCCEEEE
Confidence 5678889884 56765 56777888997 78888887543 233222 22332 245668899999999998887
Q ss_pred ec
Q 024871 179 DV 180 (261)
Q Consensus 179 ~~ 180 (261)
+.
T Consensus 79 tt 80 (245)
T PRK15114 79 TS 80 (245)
T ss_pred Ec
Confidence 64
No 229
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=81.80 E-value=5.3 Score=36.66 Aligned_cols=65 Identities=18% Similarity=0.214 Sum_probs=44.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+||| .+++....+.-+..-|..+++.-.. + +...+.+++.|. +...++.|+++++|||++-.
T Consensus 1 ~kIafIG-LG~MG~pmA~~L~~aG~~v~v~~r~---~-~ka~~~~~~~Ga---~~a~s~~eaa~~aDvVitmv 65 (286)
T COG2084 1 MKIAFIG-LGIMGSPMAANLLKAGHEVTVYNRT---P-EKAAELLAAAGA---TVAASPAEAAAEADVVITML 65 (286)
T ss_pred CeEEEEc-CchhhHHHHHHHHHCCCEEEEEeCC---h-hhhhHHHHHcCC---cccCCHHHHHHhCCEEEEec
Confidence 3799999 5777777777777778777655321 1 111344556663 45678899999999999964
No 230
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=81.56 E-value=3.3 Score=34.39 Aligned_cols=94 Identities=20% Similarity=0.220 Sum_probs=56.5
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEE---------------------
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEI--------------------- 162 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~--------------------- 162 (261)
.+...+|+++|. ++|...-+.++..+|++++.. ..+ ++..+..+..+...+.+
T Consensus 17 ~~~p~~vvv~G~-G~vg~gA~~~~~~lGa~v~~~--d~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 90 (168)
T PF01262_consen 17 GVPPAKVVVTGA-GRVGQGAAEIAKGLGAEVVVP--DER---PERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPE 90 (168)
T ss_dssp EE-T-EEEEEST-SHHHHHHHHHHHHTT-EEEEE--ESS---HHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCC
T ss_pred CCCCeEEEEECC-CHHHHHHHHHHhHCCCEEEec--cCC---HHHHHhhhcccCceEEEcccccccccccchhhhhHHHH
Confidence 466789999995 889999999999999997644 222 23333444444222322
Q ss_pred --EcCHHHHhCCCCEEEEec--ccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEE
Q 024871 163 --TNDPKEVVQGADVVYSDV--WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYF 216 (261)
Q Consensus 163 --~~d~~~a~~~aDviy~~~--w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~ 216 (261)
...+.+.++.+|+|++.. |.. ..|.-|+++.++..++...|
T Consensus 91 ~~~~~f~~~i~~~d~vI~~~~~~~~-------------~~P~lvt~~~~~~m~~gsvI 135 (168)
T PF01262_consen 91 SYESNFAEFIAPADIVIGNGLYWGK-------------RAPRLVTEEMVKSMKPGSVI 135 (168)
T ss_dssp HHHHHHHHHHHH-SEEEEHHHBTTS-------------S---SBEHHHHHTSSTTEEE
T ss_pred HhHHHHHHHHhhCcEEeeecccCCC-------------CCCEEEEhHHhhccCCCceE
Confidence 113457789999988753 321 23566999999988765443
No 231
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=81.06 E-value=11 Score=34.20 Aligned_cols=67 Identities=13% Similarity=0.145 Sum_probs=46.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC-----------CeEEEEcCHHHHhCCCCEE
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI-----------SKIEITNDPKEVVQGADVV 176 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~-----------~~i~~~~d~~~a~~~aDvi 176 (261)
.||+++|- +++...++..+..-|.++.+.... ++..+.+++.+. ..+..+.|++++++++|+|
T Consensus 2 mkI~iiG~-G~mG~~~a~~L~~~g~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 75 (325)
T PRK00094 2 MKIAVLGA-GSWGTALAIVLARNGHDVTLWARD-----PEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLI 75 (325)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCEEEEEECC-----HHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEE
Confidence 47999994 788888888887778887776542 233343443320 1356678888899999999
Q ss_pred EEec
Q 024871 177 YSDV 180 (261)
Q Consensus 177 y~~~ 180 (261)
+.-.
T Consensus 76 i~~v 79 (325)
T PRK00094 76 LVAV 79 (325)
T ss_pred EEeC
Confidence 8864
No 232
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=80.96 E-value=10 Score=37.78 Aligned_cols=74 Identities=12% Similarity=0.043 Sum_probs=46.6
Q ss_pred hccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCc
Q 024871 53 YNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPF 132 (261)
Q Consensus 53 ~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~ 132 (261)
=+|+|+-|.. ...-+.++.++|||.-.-+.+-=-|+| +..+.+ +.||++||- .++....-..+..++.
T Consensus 54 ~~dviIsrG~---ta~~i~~~~~iPVv~i~~s~~Dil~al----~~a~~~----~~~ia~vg~-~~~~~~~~~~~~ll~~ 121 (526)
T TIGR02329 54 RCDVVVAGGS---NGAYLKSRLSLPVIVIKPTGFDVMQAL----ARARRI----ASSIGVVTH-QDTPPALRRFQAAFNL 121 (526)
T ss_pred CCcEEEECch---HHHHHHHhCCCCEEEecCChhhHHHHH----HHHHhc----CCcEEEEec-CcccHHHHHHHHHhCC
Confidence 3699999954 455555678999999654444333332 333333 468999996 4555566566666666
Q ss_pred EEEEeC
Q 024871 133 HFVCAC 138 (261)
Q Consensus 133 ~~~~~~ 138 (261)
++.+.+
T Consensus 122 ~i~~~~ 127 (526)
T TIGR02329 122 DIVQRS 127 (526)
T ss_pred ceEEEE
Confidence 655544
No 233
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=80.95 E-value=8.8 Score=34.63 Aligned_cols=64 Identities=19% Similarity=0.297 Sum_probs=43.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCC----cEEEEeCCCCCCCCHHHHHHHHH-hCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIP----FHFVCACPKGFEPDKETVEKARK-AGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g----~~~~~~~P~~~~~~~~~~~~~~~-~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+|+| .+|+..+++..+..-| .++++..+ +++-.+.+.+ .| ++.+++..++++++|+|+.-.
T Consensus 3 ~~IgfIG-~G~MG~aia~~L~~~g~~~~~~I~v~~r-----~~~~~~~l~~~~g---~~~~~~~~e~~~~aDiIiLav 71 (272)
T PRK12491 3 KQIGFIG-CGNMGIAMIGGMINKNIVSPDQIICSDL-----NVSNLKNASDKYG---ITITTNNNEVANSADILILSI 71 (272)
T ss_pred CeEEEEC-ccHHHHHHHHHHHHCCCCCCceEEEECC-----CHHHHHHHHHhcC---cEEeCCcHHHHhhCCEEEEEe
Confidence 5899999 4788888887765544 25666554 2333444443 55 355778888999999998764
No 234
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=80.94 E-value=18 Score=34.67 Aligned_cols=117 Identities=14% Similarity=0.023 Sum_probs=70.0
Q ss_pred HHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCC-CCCC----hhH
Q 024871 16 FETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLT-DYNH----PCQ 90 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~-~~~H----PtQ 90 (261)
+..=...+|.++..+ +..|-|++|..+.=++-..+++-+.......+.+.+.-++|.+.... -.-. =.+
T Consensus 184 i~~lL~~~Gi~v~~~------~~~~~~~~ei~~~~~A~lniv~~~~~g~~~a~~Lee~~GiP~~~~~~P~G~~~T~~~l~ 257 (426)
T cd01972 184 FKRLLNELGLRVNAI------IAGGCSVEELERASEAAANVTLCLDLGYYLGAALEQRFGVPEIKAPQPYGIEATDKWLR 257 (426)
T ss_pred HHHHHHHcCCeEEEE------eCCCCCHHHHHhcccCCEEEEEChhHHHHHHHHHHHHhCCCeEecCCccCHHHHHHHHH
Confidence 444566778887655 23467788887766666666654433345566777778999887431 1111 223
Q ss_pred HHHHHHHHH-------------------HHhCCCCCcEEEEEcCCCchHHHHHHHHhcCC-cEEEEeCC
Q 024871 91 IMADALTII-------------------EHVGRLEGTKVVYVGDGNNIVHSWLLMASVIP-FHFVCACP 139 (261)
Q Consensus 91 ~L~Dl~Ti~-------------------e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g-~~~~~~~P 139 (261)
.|++++-+. +....|+|+|+++.|+... ..+++..+.-+| +++..++-
T Consensus 258 ~ia~~~g~~~~~e~~i~~e~~~~~~~l~~~~~~l~Gk~~~i~~~~~~-~~~~~~~l~elG~~~v~~~~~ 325 (426)
T cd01972 258 EIAKVLGMEAEAEAVIEREHERVAPEIEELRKALKGKKAIVETGAAY-GHLLIAVLRELGFGEVPVVLV 325 (426)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCcc-HHHHHHHHHHcCCceEEEEEe
Confidence 344433221 1113489999999998654 445555566789 88776543
No 235
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=80.77 E-value=40 Score=30.89 Aligned_cols=86 Identities=19% Similarity=0.186 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhC-CCCCcEEEEEcCCC---chHHHHHHHHhcCCc-------EEEEeCCCCCC------CCHHHHHHHHH
Q 024871 92 MADALTIIEHVG-RLEGTKVVYVGDGN---NIVHSWLLMASVIPF-------HFVCACPKGFE------PDKETVEKARK 154 (261)
Q Consensus 92 L~Dl~Ti~e~~g-~l~~~~i~~vGd~~---~v~~S~~~~~~~~g~-------~~~~~~P~~~~------~~~~~~~~~~~ 154 (261)
|+=++.-.+..| +|+..||+++|-+. .++.-++.....-|+ +++++--+|+- +.+....++++
T Consensus 9 lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~ 88 (279)
T cd05312 9 LAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARK 88 (279)
T ss_pred HHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhh
Confidence 444444444444 59999999999862 355555554433455 56666555432 23333344544
Q ss_pred hCCCeEEEEcCHHHHhC--CCCEEEEec
Q 024871 155 AGISKIEITNDPKEVVQ--GADVVYSDV 180 (261)
Q Consensus 155 ~g~~~i~~~~d~~~a~~--~aDviy~~~ 180 (261)
.. . ....++.|+++ ++||++-.+
T Consensus 89 ~~-~--~~~~~L~e~i~~v~ptvlIG~S 113 (279)
T cd05312 89 DE-E--KEGKSLLEVVKAVKPTVLIGLS 113 (279)
T ss_pred cC-c--ccCCCHHHHHHhcCCCEEEEeC
Confidence 32 1 23468999999 999999875
No 236
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=80.72 E-value=50 Score=32.31 Aligned_cols=154 Identities=12% Similarity=0.025 Sum_probs=80.2
Q ss_pred HHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCC----CCCChhHHHH
Q 024871 18 TGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLT----DYNHPCQIMA 93 (261)
Q Consensus 18 ~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~----~~~HPtQ~L~ 93 (261)
.=...+|.++... +..+-|++|..+.-++-..+++-........+.+.+.-++|.+...- +..-=-+.|+
T Consensus 227 ~lL~~~Gi~v~~~------~sg~~t~~~i~~~~~A~lniv~~~~~~~~~A~~Le~~fGiP~~~~~~~Gi~~T~~~Lr~ia 300 (466)
T TIGR01282 227 ILLEEIGLRVVAQ------WSGDGTLNEMENAPKAKLNLIHCYRSMNYISRHMEEKYGIPWMEYNFFGPTKIAESLRKIA 300 (466)
T ss_pred HHHHHcCCeEEEE------ECCCCCHHHHHhcccCCEEEEEChHHHHHHHHHHHHHhCCceEeCCCCCHHHHHHHHHHHH
Confidence 3455677776532 12346777777766666666554322223456666777999887531 1111112223
Q ss_pred HHHH--H------------------HH-HhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHH
Q 024871 94 DALT--I------------------IE-HVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKA 152 (261)
Q Consensus 94 Dl~T--i------------------~e-~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~ 152 (261)
.++- + .+ ....|+|+|+++.|+.. -.++++..+.-+|++++.++- .+.-.++.-+..
T Consensus 301 ~~~g~~i~~~~e~~I~~e~~~~~~~ld~~~~~L~GKrv~i~~g~~-~~~~~~~~l~ELGmevv~~g~-~~~~~~~~~~~~ 378 (466)
T TIGR01282 301 EFFDDEIKEKAEEVIAKYQPAVDAVIAKYRPRLEGKTVMLYVGGL-RPRHVIGAFEDLGMEVIGTGY-EFAHNDDYERTT 378 (466)
T ss_pred HHHCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHHHHHCCCEEEEEee-ecCCHHHHHHHH
Confidence 3221 1 11 22458999999988653 345555566679999986643 222233333333
Q ss_pred HHhCCCeEEEEc--C---HHHHh--CCCCEEEEec
Q 024871 153 RKAGISKIEITN--D---PKEVV--QGADVVYSDV 180 (261)
Q Consensus 153 ~~~g~~~i~~~~--d---~~~a~--~~aDviy~~~ 180 (261)
+..+. ...+.+ | +++.+ .+.|+++...
T Consensus 379 ~~~~~-~~~i~~~~d~~el~~~i~~~~pDl~ig~~ 412 (466)
T TIGR01282 379 KYMKD-GTLIYDDVTHYEFEEFVEKLKPDLVGSGI 412 (466)
T ss_pred HhcCC-CeEEeeCCCHHHHHHHHHHhCCCEEEecC
Confidence 33332 222232 2 23333 3678887753
No 237
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=80.54 E-value=11 Score=36.29 Aligned_cols=67 Identities=25% Similarity=0.382 Sum_probs=41.8
Q ss_pred cEEEEEcCCCchHHHHHH---HH---hcCCcEEEEeCCCCCCCCHHHHHH--------HHHhC-CCeEEEEcCHHHHhCC
Q 024871 108 TKVVYVGDGNNIVHSWLL---MA---SVIPFHFVCACPKGFEPDKETVEK--------ARKAG-ISKIEITNDPKEVVQG 172 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~---~~---~~~g~~~~~~~P~~~~~~~~~~~~--------~~~~g-~~~i~~~~d~~~a~~~ 172 (261)
+||+++|- +.+..++.. ++ +.-|.++++.... ++.++. +...+ ..+++.+.|+++++++
T Consensus 1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~L~Did-----~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~ 74 (423)
T cd05297 1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIALMDID-----EERLETVEILAKKIVEELGAPLKIEATTDRREALDG 74 (423)
T ss_pred CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEEEECCC-----HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcC
Confidence 48999996 445555433 22 3335677776543 222221 12222 1467789999999999
Q ss_pred CCEEEEec
Q 024871 173 ADVVYSDV 180 (261)
Q Consensus 173 aDviy~~~ 180 (261)
||+|+...
T Consensus 75 AD~Vi~ai 82 (423)
T cd05297 75 ADFVINTI 82 (423)
T ss_pred CCEEEEee
Confidence 99998864
No 238
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=80.13 E-value=5.7 Score=37.87 Aligned_cols=69 Identities=22% Similarity=0.253 Sum_probs=43.8
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCC-------------CCC-HHHHHHHHHhCCCeEEEEcCHHHHhCCCC
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGF-------------EPD-KETVEKARKAGISKIEITNDPKEVVQGAD 174 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~-------------~~~-~~~~~~~~~~g~~~i~~~~d~~~a~~~aD 174 (261)
||+++|- +++...++..++.-|.+++...+..- ++. ++++....+.| .+..++|+.++++++|
T Consensus 2 kI~vIGl-G~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g--~l~~~~~~~~~~~~ad 78 (411)
T TIGR03026 2 KIAVIGL-GYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAG--RLRATTDYEDAIRDAD 78 (411)
T ss_pred EEEEECC-CchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcC--CeEEECCHHHHHhhCC
Confidence 7999994 77888887777777888776643211 010 01111111122 4778889999999999
Q ss_pred EEEEec
Q 024871 175 VVYSDV 180 (261)
Q Consensus 175 viy~~~ 180 (261)
+|+...
T Consensus 79 vvii~v 84 (411)
T TIGR03026 79 VIIICV 84 (411)
T ss_pred EEEEEe
Confidence 988753
No 239
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=80.09 E-value=6.3 Score=37.88 Aligned_cols=70 Identities=23% Similarity=0.287 Sum_probs=48.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeC-------------CCCCCCCHHHHHHHHHhC-CCeEEEEcCHHHHhCCC
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCAC-------------PKGFEPDKETVEKARKAG-ISKIEITNDPKEVVQGA 173 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~-------------P~~~~~~~~~~~~~~~~g-~~~i~~~~d~~~a~~~a 173 (261)
.||+++|- +.|.-+....++.+|-+++++- +|-|+|. +-+.++++. .+.+..|.|.++|++++
T Consensus 1 MkI~viGt-GYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~Epg--Le~ll~~~~~~gRl~fTtd~~~a~~~a 77 (414)
T COG1004 1 MKITVIGT-GYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPG--LEELLKENLASGRLRFTTDYEEAVKDA 77 (414)
T ss_pred CceEEECC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCcc--HHHHHHhccccCcEEEEcCHHHHHhcC
Confidence 47889994 7788888888888998887664 2334332 222233332 23589999999999999
Q ss_pred CEEEEec
Q 024871 174 DVVYSDV 180 (261)
Q Consensus 174 Dviy~~~ 180 (261)
|+++--.
T Consensus 78 dv~fIav 84 (414)
T COG1004 78 DVVFIAV 84 (414)
T ss_pred CEEEEEc
Confidence 9988753
No 240
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=79.96 E-value=9 Score=35.35 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=44.5
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCc--EEEEeCCCCCCCCHHHHHHHHHhC---CCeEEEEcCHHHHhCCCCEEEEec
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPF--HFVCACPKGFEPDKETVEKARKAG---ISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~~g---~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
||++||. ++|..+++..+..-+. +++++-...-....+.+|...... ..+++++.+..+.++|||+|+.+.
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvita 76 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITA 76 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECC
Confidence 6899997 7788888776655553 677776543334444455433221 123444444467899999998874
No 241
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=79.91 E-value=25 Score=32.19 Aligned_cols=68 Identities=21% Similarity=0.269 Sum_probs=46.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHh--------CC---CeEEEEcCHHHHhCCCCE
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKA--------GI---SKIEITNDPKEVVQGADV 175 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~--------g~---~~i~~~~d~~~a~~~aDv 175 (261)
..||+++|- +++...++..+..-|.++++..+. ++..+.+++. |. ..+..+++++++++++|+
T Consensus 4 ~m~I~iIG~-G~mG~~ia~~L~~~G~~V~~~~r~-----~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~ 77 (328)
T PRK14618 4 GMRVAVLGA-GAWGTALAVLAASKGVPVRLWARR-----PEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADF 77 (328)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCCeEEEEeCC-----HHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCE
Confidence 368999995 778888887777778888877652 2222323321 20 125667899999999999
Q ss_pred EEEec
Q 024871 176 VYSDV 180 (261)
Q Consensus 176 iy~~~ 180 (261)
|..-.
T Consensus 78 Vi~~v 82 (328)
T PRK14618 78 AVVAV 82 (328)
T ss_pred EEEEC
Confidence 98864
No 242
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=79.83 E-value=54 Score=31.49 Aligned_cols=113 Identities=11% Similarity=-0.047 Sum_probs=64.3
Q ss_pred HHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCCh----hHHHHH
Q 024871 19 GFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHP----CQIMAD 94 (261)
Q Consensus 19 A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HP----tQ~L~D 94 (261)
=...+|.++... +..|-|++|..+.=++-..+++-+.......+.+.+.-++|.+...--.-+. .+.|++
T Consensus 193 lL~~~Gi~v~~~------~~~~~t~eei~~~~~A~lniv~~~~~~~~~a~~Le~~fGiP~~~~~p~Gi~~t~~~l~~ia~ 266 (421)
T cd01976 193 LLEEMGLRVVAQ------WSGDGTLNEMENAHKAKLNLIHCYRSMNYIARMMEEKYGIPWMEYNFFGPTKIAESLRKIAA 266 (421)
T ss_pred HHHHcCCeEEEE------eCCCCCHHHHHhcccCCEEEEECcHHHHHHHHHHHHHhCCcEEecccCCHHHHHHHHHHHHH
Confidence 445666666531 2346777777776555556555332222345667777899988863111122 233333
Q ss_pred HHHH----------HH-----------HhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeC
Q 024871 95 ALTI----------IE-----------HVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCAC 138 (261)
Q Consensus 95 l~Ti----------~e-----------~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~ 138 (261)
++-. .+ ....|+|+|+++.|+... ..+++..+.-+|++++.++
T Consensus 267 ~~g~~~~~~~e~~i~~e~~~~~~~l~~~~~~L~Gkrv~i~~g~~~-~~~~~~~l~elGmevv~~g 330 (421)
T cd01976 267 YFDDEITAKTEEVIAEYKPAMEAVIAKYRPRLEGKTVMLYVGGLR-PRHYIGAYEDLGMEVVGTG 330 (421)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCCc-HHHHHHHHHHCCCEEEEEE
Confidence 3311 11 124589999999987432 3444456667999988764
No 243
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=79.51 E-value=31 Score=33.35 Aligned_cols=159 Identities=13% Similarity=0.118 Sum_probs=89.0
Q ss_pred HHHHHHHHhcCCeEEEeCC-CC---cC---------CCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 14 VSFETGFSLLGGHAIYLGP-DD---IQ---------MGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 14 ~SFe~A~~~LGg~~~~l~~-~~---s~---------~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
--+..=...+|..++.+.. ++ ++ ...|-|++|..+.=++-+.+++ ........+.+.+.-++|-+.
T Consensus 184 ~elk~lL~~~Gl~~~~l~d~s~~ld~~~~~~~~~~~~~gg~t~eei~~~~~A~lniv~-~~~~~~~a~~Lee~~giP~~~ 262 (432)
T TIGR01285 184 EELRRMVEAFGLKPIILPDLSRSLDGHLADDDFSPITQGGTTLEQIRQIGQSCCTLAI-GESMRRAASLLADRCGVPYIV 262 (432)
T ss_pred HHHHHHHHHcCCceEEecccccccCCCCCCCccceeCCCCCcHHHHHhhccCcEEEEE-ChhHHHHHHHHHHHHCCCeEe
Confidence 3444556788999876532 11 11 2357888988887666666554 333344566777778999887
Q ss_pred CCC-CC----CChhHHHHHHHH------HHH-----------HhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeC
Q 024871 81 GLT-DY----NHPCQIMADALT------IIE-----------HVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCAC 138 (261)
Q Consensus 81 a~~-~~----~HPtQ~L~Dl~T------i~e-----------~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~ 138 (261)
... -. .-=-+.|++++- +.+ ....+.|+|+++.||. .-+.+++..+.-+|+++..+.
T Consensus 263 ~~~p~G~~~t~~~l~~l~~~~g~~~~~~~~~~r~~~~~~l~~~~~~l~Gkrvai~~~~-~~~~~l~~~l~elGm~v~~~~ 341 (432)
T TIGR01285 263 FPSLMGLEAVDAFLHVLMKISGRAVPERFERQRRQLQDAMLDTHFFLGGKKVAIAAEP-DLLAAWATFFTSMGAQIVAAV 341 (432)
T ss_pred cCCCcChHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHHHHHhhCCCEEEEEcCH-HHHHHHHHHHHHCCCEEEEEE
Confidence 522 11 111233444432 111 1124789999999984 356777777788999876554
Q ss_pred CCCCCCCHHHHHHHHHhCCCeEEEEcCHH---HHh--CCCCEEEEecc
Q 024871 139 PKGFEPDKETVEKARKAGISKIEITNDPK---EVV--QGADVVYSDVW 181 (261)
Q Consensus 139 P~~~~~~~~~~~~~~~~g~~~i~~~~d~~---~a~--~~aDviy~~~w 181 (261)
-....+ .. ++.....+ +..|.. +.+ .+.|+|+...|
T Consensus 342 ~~~~~~---~~---~~~~~~~~-~~~D~~~l~~~i~~~~~dliig~s~ 382 (432)
T TIGR01285 342 TTTGSP---LL---QKLPVETV-VIGDLEDLEDLACAAGADLLITNSH 382 (432)
T ss_pred eCCCCH---HH---HhCCcCcE-EeCCHHHHHHHHhhcCCCEEEECcc
Confidence 322211 11 11121223 346653 344 45788887654
No 244
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=79.31 E-value=60 Score=31.06 Aligned_cols=72 Identities=10% Similarity=0.032 Sum_probs=42.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCC-CC-CCHHHHHHHHHhCCCeEEEEcCHHH---H--hCCCCEEE
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKG-FE-PDKETVEKARKAGISKIEITNDPKE---V--VQGADVVY 177 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~-~~-~~~~~~~~~~~~g~~~i~~~~d~~~---a--~~~aDviy 177 (261)
+.| |+++.||... ..+++..+.-+|++++.++-.. .. ..++..++..+.+. .+....|+++ . -.++|+++
T Consensus 279 l~g-kv~v~g~~~~-~~~la~~L~elGmevv~~~t~~~~~~~~~~~~~~l~~~~~-~v~~~~~~~~~~~~~~~~~pDl~I 355 (416)
T cd01980 279 IKG-RVLVSGYEGN-ELLVARLLIESGAEVPYVSTSIPKTSLSAPDYEWLSALGV-EVRYRKSLEDDIAAVEEYRPDLAI 355 (416)
T ss_pred hCc-eEEEECCCch-hHHHHHHHHHcCCEEEEEecCCCChhhhHHHHHHHHhcCC-ccccCCCHHHHHHHHhhcCCCEEE
Confidence 566 7777887655 5558888888999988765432 11 23444455544432 2322344432 1 24788888
Q ss_pred Ee
Q 024871 178 SD 179 (261)
Q Consensus 178 ~~ 179 (261)
..
T Consensus 356 g~ 357 (416)
T cd01980 356 GT 357 (416)
T ss_pred eC
Confidence 75
No 245
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=79.27 E-value=3.8 Score=39.58 Aligned_cols=73 Identities=23% Similarity=0.419 Sum_probs=41.9
Q ss_pred cEEEEEcCCCc----hHHHHHHHHhcCC-cEEEEeCCCC---CCCCHHHHH-HHHHhC-CCeEEEEcCHHHHhCCCCEEE
Q 024871 108 TKVVYVGDGNN----IVHSWLLMASVIP-FHFVCACPKG---FEPDKETVE-KARKAG-ISKIEITNDPKEVVQGADVVY 177 (261)
Q Consensus 108 ~~i~~vGd~~~----v~~S~~~~~~~~g-~~~~~~~P~~---~~~~~~~~~-~~~~~g-~~~i~~~~d~~~a~~~aDviy 177 (261)
.||+++|.++- +..+++.....++ -++++.-.+. +..-..+.+ ..++.| .-+++.+.|.++|++|||+|+
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfVi 80 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVF 80 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence 48999998752 3333333233344 5666654431 111111111 122334 246888999999999999999
Q ss_pred Eec
Q 024871 178 SDV 180 (261)
Q Consensus 178 ~~~ 180 (261)
+.-
T Consensus 81 ~~~ 83 (419)
T cd05296 81 TQI 83 (419)
T ss_pred EEE
Confidence 874
No 246
>PRK06199 ornithine cyclodeaminase; Validated
Probab=79.15 E-value=9.4 Score=36.33 Aligned_cols=77 Identities=18% Similarity=0.199 Sum_probs=46.2
Q ss_pred hCCCCCcEEEEEcCCCchHHHHHHHHh-cCC-c-EEEEeCCCCCCCCHHHHHHHHHh--CCCeEEEEcCHHHHhCCCCEE
Q 024871 102 VGRLEGTKVVYVGDGNNIVHSWLLMAS-VIP-F-HFVCACPKGFEPDKETVEKARKA--GISKIEITNDPKEVVQGADVV 176 (261)
Q Consensus 102 ~g~l~~~~i~~vGd~~~v~~S~~~~~~-~~g-~-~~~~~~P~~~~~~~~~~~~~~~~--g~~~i~~~~d~~~a~~~aDvi 176 (261)
+..=+-++++++|- +..+.+.++++. .++ + ++.+..+.. .-.+.+.+.+++. |...++..+|.++++++||||
T Consensus 150 LAr~da~~l~iiG~-G~QA~~~l~a~~~v~~~i~~V~v~~r~~-~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIV 227 (379)
T PRK06199 150 LARKDSKVVGLLGP-GVMGKTILAAFMAVCPGIDTIKIKGRGQ-KSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIV 227 (379)
T ss_pred hccCCCCEEEEECC-cHHHHHHHHHHHHhcCCccEEEEECCCH-HHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEE
Confidence 33335589999997 445555554433 353 4 566655532 1112233333332 322478899999999999999
Q ss_pred EEec
Q 024871 177 YSDV 180 (261)
Q Consensus 177 y~~~ 180 (261)
.|.+
T Consensus 228 vtaT 231 (379)
T PRK06199 228 TYCN 231 (379)
T ss_pred EEcc
Confidence 9865
No 247
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=79.07 E-value=24 Score=32.35 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=28.5
Q ss_pred CCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCC
Q 024871 172 GADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERG 225 (261)
Q Consensus 172 ~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg 225 (261)
++|+|..-.|. ..+.++.++..+...+=+|| ||.+||
T Consensus 169 ~~Dlivlagym-----------------~il~~~~l~~~~~~iiNiHpSlLP~f~G 207 (289)
T PRK13010 169 GAELVVLARYM-----------------QVLSDDLSRKLSGRAINIHHSFLPGFKG 207 (289)
T ss_pred CCCEEEEehhh-----------------hhCCHHHHhhccCCceeeCcccCCCCCC
Confidence 47888887542 34677888877778899999 999886
No 248
>PLN02712 arogenate dehydrogenase
Probab=79.00 E-value=6.1 Score=40.47 Aligned_cols=66 Identities=15% Similarity=0.129 Sum_probs=48.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHh-CCCCEEEEec
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVV-QGADVVYSDV 180 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~-~~aDviy~~~ 180 (261)
-..++|++|| .+++..|++..+...|.+++...+.. . .+.+++.|. ..+.|.++.+ +++|+|+.-.
T Consensus 50 ~~~~kIgIIG-~G~mG~slA~~L~~~G~~V~~~dr~~-----~-~~~A~~~Gv---~~~~d~~e~~~~~aDvViLav 116 (667)
T PLN02712 50 TTQLKIAIIG-FGNYGQFLAKTLISQGHTVLAHSRSD-----H-SLAARSLGV---SFFLDPHDLCERHPDVILLCT 116 (667)
T ss_pred CCCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCH-----H-HHHHHHcCC---EEeCCHHHHhhcCCCEEEEcC
Confidence 3457999999 68999999999988898888776642 1 234566663 3467888855 6799998864
No 249
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=78.98 E-value=30 Score=31.20 Aligned_cols=73 Identities=18% Similarity=0.182 Sum_probs=44.9
Q ss_pred hHHHHHHHHHhcCCe-EEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHH---HHhhhCCCcEEeCCCCCC
Q 024871 12 TRVSFETGFSLLGGH-AIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDIL---DLAKFATVPVINGLTDYN 86 (261)
Q Consensus 12 TR~SFe~A~~~LGg~-~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~---~~a~~~~vPVINa~~~~~ 86 (261)
-+-.++.+++.+|.. .+........ ..+-+.+.-..+.+=+|.|++=...+..+. +-+...+||||.-+++..
T Consensus 51 ~~~g~~~~a~~~g~~~~~~~~~~~~d--~~~Q~~~i~~~ia~~~daIiv~~~d~~~~~~~v~~a~~aGIpVv~~d~~~~ 127 (322)
T COG1879 51 VRKGAEAAAKKLGVVVAVVIADAQND--VAKQIAQIEDLIAQGVDAIIINPVDPDALTPAVKKAKAAGIPVVTVDSDIP 127 (322)
T ss_pred HHHHHHHHHHHcCCcEEEEecccccC--hHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHHHCCCcEEEEecCCC
Confidence 345689999999972 2222221111 223334444446777899999777666543 555678999999765433
No 250
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=78.96 E-value=43 Score=29.16 Aligned_cols=73 Identities=27% Similarity=0.402 Sum_probs=45.1
Q ss_pred CCcEEEEEcCCCc-------hHHHHHHHHhcCCcEEEEeCC-CC--CCCCHHHHHHHHHhC------CCeEEEEcCHHHH
Q 024871 106 EGTKVVYVGDGNN-------IVHSWLLMASVIPFHFVCACP-KG--FEPDKETVEKARKAG------ISKIEITNDPKEV 169 (261)
Q Consensus 106 ~~~~i~~vGd~~~-------v~~S~~~~~~~~g~~~~~~~P-~~--~~~~~~~~~~~~~~g------~~~i~~~~d~~~a 169 (261)
.|.++++||+.+- .+-.++.++.++|++++..-= .| +..+.++++..++.- ++.|+-.++.+++
T Consensus 115 ~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l 194 (205)
T TIGR01769 115 PGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEI 194 (205)
T ss_pred CCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHH
Confidence 4569999998531 566788888899986554321 33 335677777666531 1234434455666
Q ss_pred h-CCCCEEEE
Q 024871 170 V-QGADVVYS 178 (261)
Q Consensus 170 ~-~~aDviy~ 178 (261)
+ .+||.|.+
T Consensus 195 ~~~GAD~VVV 204 (205)
T TIGR01769 195 VLAGADAIVT 204 (205)
T ss_pred HHcCCCEEEe
Confidence 5 46888765
No 251
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=78.93 E-value=1.4 Score=32.80 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=31.1
Q ss_pred HHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHh-hhCCCcEEeCCCC
Q 024871 17 ETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLA-KFATVPVINGLTD 84 (261)
Q Consensus 17 e~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a-~~~~vPVINa~~~ 84 (261)
..+.+.-|-.|+.++... | .+-+|++|+...... +..+. -...+|||||.|.
T Consensus 14 ~~~L~~~GyeVv~l~~~~----------~-----~~~~daiVvtG~~~n-~mg~~d~~~~~pVInA~G~ 66 (80)
T PF03698_consen 14 KEALREKGYEVVDLENEQ----------D-----LQNVDAIVVTGQDTN-MMGIQDTSTKVPVINASGL 66 (80)
T ss_pred HHHHHHCCCEEEecCCcc----------c-----cCCcCEEEEECCCcc-cccccccccCceEEecCCC
Confidence 345556666666664321 0 124799999876554 33333 3467899999763
No 252
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=78.84 E-value=17 Score=33.44 Aligned_cols=72 Identities=19% Similarity=0.218 Sum_probs=43.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCc--EEEEeCCCC--CCCCHHHHH---HHHHhCC-CeEEEEcCHHHHhCCCCEEEEe
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPF--HFVCACPKG--FEPDKETVE---KARKAGI-SKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~--~~~~~~~~~---~~~~~g~-~~i~~~~d~~~a~~~aDviy~~ 179 (261)
+||+++|..+++..+.+..+...|. +++++.++. -.+....++ .+...+. ..+..+.| .+.+++||+|+..
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEe
Confidence 4899999878888888877776664 466665522 111111111 1112221 23444556 4569999998886
Q ss_pred c
Q 024871 180 V 180 (261)
Q Consensus 180 ~ 180 (261)
.
T Consensus 80 a 80 (309)
T cd05294 80 A 80 (309)
T ss_pred c
Confidence 4
No 253
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=78.70 E-value=8.3 Score=38.51 Aligned_cols=103 Identities=13% Similarity=0.048 Sum_probs=60.3
Q ss_pred CHHHHHHHH-----hhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 024871 42 ETRDAARVL-----CRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG 116 (261)
Q Consensus 42 s~~Dt~~~l-----s~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~ 116 (261)
.++|.+... ..=+|+|+-|.. ...-+.++.++|||.-.-+.+-=-|+| +..+.+ +.||++||-
T Consensus 48 ~~~~~v~~~~~~~~~~~~dviIsrG~---ta~~i~~~~~iPVv~i~~s~~Dil~al----~~a~~~----~~~iavv~~- 115 (538)
T PRK15424 48 GFEKAVTYIRKRLATERCDAIIAAGS---NGAYLKSRLSVPVILIKPSGFDVMQAL----ARARKL----TSSIGVVTY- 115 (538)
T ss_pred hHHHHHHHHHHHHhhCCCcEEEECch---HHHHHHhhCCCCEEEecCCHhHHHHHH----HHHHhc----CCcEEEEec-
Confidence 345555544 223699999954 445555678999999754444433333 233333 468999996
Q ss_pred CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 117 NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 117 ~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
.++...+-..+..++.++.+.+-....--...++.+++.|
T Consensus 116 ~~~~~~~~~~~~~l~~~i~~~~~~~~~e~~~~v~~lk~~G 155 (538)
T PRK15424 116 QETIPALVAFQKTFNLRIEQRSYVTEEDARGQINELKANG 155 (538)
T ss_pred CcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCC
Confidence 5566666677777777666554332222223344555555
No 254
>PLN02828 formyltetrahydrofolate deformylase
Probab=78.36 E-value=53 Score=29.86 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=42.1
Q ss_pred HHHHHHHHHhCCCeEEEEc--------CHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEe
Q 024871 146 KETVEKARKAGISKIEITN--------DPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFM 217 (261)
Q Consensus 146 ~~~~~~~~~~g~~~i~~~~--------d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~m 217 (261)
....+.|+++|+..+.+.. .+.+.++++|+|..-.|. ..++++.++..+..++=+
T Consensus 113 a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~~~DliVLAgym-----------------~IL~~~~l~~~~~riINI 175 (268)
T PLN02828 113 THVMRFLERHGIPYHYLPTTKENKREDEILELVKGTDFLVLARYM-----------------QILSGNFLKGYGKDIINI 175 (268)
T ss_pred chHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHhcCCEEEEeeeh-----------------HhCCHHHHhhccCCEEEe
Confidence 3455666777754332211 223456789999988652 237888888888889999
Q ss_pred eC--CCCCCC
Q 024871 218 HC--LPAERG 225 (261)
Q Consensus 218 H~--lP~~rg 225 (261)
|| ||.+||
T Consensus 176 HpSlLP~f~G 185 (268)
T PLN02828 176 HHGLLPSFKG 185 (268)
T ss_pred cCccCCCCCC
Confidence 99 999875
No 255
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=78.03 E-value=12 Score=37.16 Aligned_cols=122 Identities=19% Similarity=0.282 Sum_probs=77.3
Q ss_pred hHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh--------ccEEEEeeCCcch--HHHHhhhCCCcEEeC
Q 024871 12 TRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY--------NDIIMARVFGHQD--ILDLAKFATVPVING 81 (261)
Q Consensus 12 TR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~--------~D~iv~R~~~~~~--~~~~a~~~~vPVINa 81 (261)
..|+|| .+||..-+|.+ .|.++.++=+.++.+ +|+|| -.+.++. +..+|+.+++|+.++
T Consensus 273 ~~C~fE---------~vYfarpdS~~-~g~~V~~~R~~~G~~La~~~~~~~DvVv-~VP~sg~~~A~g~A~~lgip~~~~ 341 (500)
T PRK07349 273 KLCIFE---------MIYFARPDSRM-HGESLYSYRQRLGQQLAKESPVDADLVI-GVPDSGIPAAIGFSQASGIPYAEG 341 (500)
T ss_pred ceeEEE---------eeeccCCCCcc-CCeEHHHHHHHHHHHHhhhcccCCcEEE-EeccccHHHHHHHHHHHCCCchhc
Confidence 346776 35564333433 488887754444432 47654 4777765 467888999998765
Q ss_pred CC-C------CCChhHHHHHHHHHHH---HhCCCCCcEEEEEcCC---CchHHHHHHHHhcCC---cEEEEeCCCCCCC
Q 024871 82 LT-D------YNHPCQIMADALTIIE---HVGRLEGTKVVYVGDG---NNIVHSWLLMASVIP---FHFVCACPKGFEP 144 (261)
Q Consensus 82 ~~-~------~~HPtQ~L~Dl~Ti~e---~~g~l~~~~i~~vGd~---~~v~~S~~~~~~~~g---~~~~~~~P~~~~~ 144 (261)
+- + ..-|+|..-..--=.+ ....++|++|++|=|. +.+....+.++...| +++.++||+--.|
T Consensus 342 L~r~~y~grtfi~p~q~~R~~~~~~kl~~~~~~~~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~i~sPp~~~p 420 (500)
T PRK07349 342 LIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDVLAGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRISSPPVTHP 420 (500)
T ss_pred eEEEeccCccccCCCHHHHHhhhheeeeccccccCCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEEeCCCccccc
Confidence 42 2 2348885544222100 1234789999999995 568888888888777 4677888876443
No 256
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=77.89 E-value=7.1 Score=35.61 Aligned_cols=93 Identities=11% Similarity=0.053 Sum_probs=53.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcch
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQ 186 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~ 186 (261)
|++++++|...|-. -++..+...|.++..++.+.... +...+..+++.+++++++|+|+...=. .+
T Consensus 1 ~~~~~v~ggd~r~~-~~~~~l~~~g~~v~~~g~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~i~p~~~--~~ 66 (287)
T TIGR02853 1 GIHIAVIGGDARQL-ELIRKLEELDAKISLIGFDQLED-----------GFTGAVKCELLELDLTTLDVVILPVPG--TS 66 (287)
T ss_pred CcEEEEEcccHHHH-HHHHHHHHCCCEEEEEecccccc-----------ccccceeecchhhhhccCCEEEECCcc--cc
Confidence 68999999543311 13444556699988887543211 112356677788889999999986410 01
Q ss_pred hHHHHHHHhhh--cCCcccHHHHHhcCCCcE
Q 024871 187 KEEAAYRKQAF--QGFQVDEFLMKLAGPKAY 215 (261)
Q Consensus 187 ~~~~~~~~~~~--~~y~v~~~~~~~a~~~~~ 215 (261)
.+. .....+ ....+++++|+.+++.++
T Consensus 67 ~~~--~i~~~~~~~~~~l~~~~l~~~~~~~~ 95 (287)
T TIGR02853 67 HDG--KVATVFSNEKVVLTPELLESTKGHCT 95 (287)
T ss_pred CCc--eEecccccCCccccHHHHHhcCCCCE
Confidence 100 000111 235578888887775544
No 257
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=77.61 E-value=7.3 Score=34.11 Aligned_cols=35 Identities=17% Similarity=0.059 Sum_probs=29.8
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeC
Q 024871 103 GRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCAC 138 (261)
Q Consensus 103 g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~ 138 (261)
.+++|++|++.| .+||....++.+...|..++.++
T Consensus 19 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~G~~vV~vs 53 (217)
T cd05211 19 DSLEGLTVAVQG-LGNVGWGLAKKLAEEGGKVLAVS 53 (217)
T ss_pred CCcCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEE
Confidence 469999999999 58999999999988888766555
No 258
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.56 E-value=16 Score=35.37 Aligned_cols=75 Identities=16% Similarity=0.167 Sum_probs=47.2
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.++++||+++|= +....+++..+...|.+++.+-...-.......+.+++.|. .+...++..+-++++|+|+..+
T Consensus 11 ~~~~~~i~v~G~-G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi-~~~~~~~~~~~~~~~dlVV~Sp 85 (458)
T PRK01710 11 FIKNKKVAVVGI-GVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGV-KLVLGENYLDKLDGFDVIFKTP 85 (458)
T ss_pred hhcCCeEEEEcc-cHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCC-EEEeCCCChHHhccCCEEEECC
Confidence 367899999984 55666888888889988877653322122223334555663 3443444445578899887764
No 259
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.49 E-value=7 Score=35.52 Aligned_cols=71 Identities=14% Similarity=0.129 Sum_probs=46.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCH------HHHHHHHHhCC----------CeEEEEcCHHHHhC
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDK------ETVEKARKAGI----------SKIEITNDPKEVVQ 171 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~------~~~~~~~~~g~----------~~i~~~~d~~~a~~ 171 (261)
.||+++|- +.+..+++..++..|.++++..+..-.... ..++.+.+.|. ..++.+.|+ ++++
T Consensus 6 ~~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~ 83 (286)
T PRK07819 6 QRVGVVGA-GQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFA 83 (286)
T ss_pred cEEEEEcc-cHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhC
Confidence 48999995 678899988888889988877543211111 01111222331 356678898 5699
Q ss_pred CCCEEEEec
Q 024871 172 GADVVYSDV 180 (261)
Q Consensus 172 ~aDviy~~~ 180 (261)
+||+|+--.
T Consensus 84 ~~d~ViEav 92 (286)
T PRK07819 84 DRQLVIEAV 92 (286)
T ss_pred CCCEEEEec
Confidence 999999875
No 260
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=77.14 E-value=79 Score=33.72 Aligned_cols=114 Identities=17% Similarity=0.134 Sum_probs=67.5
Q ss_pred HHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCC----CCCChhHHHHHH
Q 024871 20 FSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLT----DYNHPCQIMADA 95 (261)
Q Consensus 20 ~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~----~~~HPtQ~L~Dl 95 (261)
...+|.+++.. +..+-|++|..+.-++-..+++-+.......+.+.+.-++|.+...- ....=-+.|+++
T Consensus 206 L~~~Gi~v~~~------~~g~~t~eei~~~~~A~lniv~~~~~~~~~A~~Le~~fGiP~~~~~p~Gi~~T~~~L~~ia~~ 279 (917)
T PRK14477 206 FDRLGIRVLSC------ISGDAKFEELRYAHRAKLNVIICSKSLTNLARKMEKRYGIPYLEESFYGMTDTAKALRDIARE 279 (917)
T ss_pred HHHcCCeEEEE------cCCCCCHHHHHhcccCCEEEEEcHHHHHHHHHHHHHHhCCCEEecCccCHHHHHHHHHHHHHH
Confidence 35667776432 12345777777765666666554433344566666677889876421 111122333343
Q ss_pred HH------------------H-----------HHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCC
Q 024871 96 LT------------------I-----------IEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPK 140 (261)
Q Consensus 96 ~T------------------i-----------~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~ 140 (261)
+- | ......++|+|+++.||.. -..+++..+.-+|++++.++-+
T Consensus 280 ~g~~~~~~~~~~~~~~~e~~i~~e~~~~~~~l~~~~~~L~GKrv~i~~g~~-~~~~la~~l~elGmevv~~g~~ 352 (917)
T PRK14477 280 LDDAGGGLEKRVLQDRVEKLIAEEEAKCRAALAPYRARLEGKRVVLFTGGV-KTWSMVNALRELGVEVLAAGTQ 352 (917)
T ss_pred hCCcccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEECCCc-hHHHHHHHHHHCCCEEEEEcCC
Confidence 31 0 1112358999999999864 3567888888899998876543
No 261
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=76.68 E-value=65 Score=30.02 Aligned_cols=130 Identities=15% Similarity=0.186 Sum_probs=77.4
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhh-hcc-EEEEeeCCc----chHHHHhhhC
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCR-YND-IIMARVFGH----QDILDLAKFA 74 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~-~~D-~iv~R~~~~----~~~~~~a~~~ 74 (261)
++.||...+..-+.+|.-|+.+..-.-..|.+..-.+..+.|.. +.+.++. +.. +..+=.+.. ..+..+++..
T Consensus 2 ig~if~~~~~~~~~af~~a~~~~n~~~~~l~~~~~~~~~~dsf~-~~~~~C~~~~~GV~AI~Gp~ss~~~~~v~~i~~~~ 80 (370)
T cd06389 2 IGGLFPRGADQEYSAFRVGMVQFSTSEFRLTPHIDNLEVANSFA-VTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTL 80 (370)
T ss_pred CceeecCCchHHHHHHHHHHHHhcccCceeeeeeEEecccchHH-HHHHHHHHhhcCcEEEEecCCHHHHHHHHHhhccC
Confidence 57899988888999999999998754333444333344444444 3333443 333 333333322 2456777888
Q ss_pred CCcEEeCCC--CC-------CCh--hHHHHHHHHHHHHhCCCCCcEEEEEcCCC---chHHHHHHHHhcCCcEEEEe
Q 024871 75 TVPVINGLT--DY-------NHP--CQIMADALTIIEHVGRLEGTKVVYVGDGN---NIVHSWLLMASVIPFHFVCA 137 (261)
Q Consensus 75 ~vPVINa~~--~~-------~HP--tQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~---~v~~S~~~~~~~~g~~~~~~ 137 (261)
.||.|.... +. -|| .++++|+ .++ ++.+|++++-|.. ..+..+...+...|.+++..
T Consensus 81 ~IP~I~~~~~~~~~~~f~~~~~p~~~~ai~d~---i~~---~~wk~vailYdsd~gl~~lq~l~~~~~~~g~~V~~~ 151 (370)
T cd06389 81 HVSFITPSFPTDGTHPFVIQMRPDLKGALLSL---IEY---YQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAI 151 (370)
T ss_pred CCCeeeecCCCCCCCceEEEecchhhhHHHHH---HHh---cCCcEEEEEecCchHHHHHHHHHHhhccCCceEEEE
Confidence 999886421 11 133 4556666 334 4678888888732 24555666666777766533
No 262
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=76.62 E-value=26 Score=30.52 Aligned_cols=37 Identities=24% Similarity=0.213 Sum_probs=28.7
Q ss_pred CCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCC
Q 024871 172 GADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERG 225 (261)
Q Consensus 172 ~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg 225 (261)
++|++.+-.|. +.+.+++++..+..++=+|| ||.+||
T Consensus 78 ~~Dliv~agy~-----------------~il~~~~l~~~~~~~iNiHpSLLP~yrG 116 (207)
T PLN02331 78 GVDFVLLAGYL-----------------KLIPVELVRAYPRSILNIHPALLPAFGG 116 (207)
T ss_pred CCCEEEEeCcc-----------------hhCCHHHHhhCCCCEEEEeCccccCCCC
Confidence 58888887652 34677778777778889999 898887
No 263
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=76.61 E-value=8 Score=34.21 Aligned_cols=64 Identities=20% Similarity=0.335 Sum_probs=41.1
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcE---EEEeCCCCCCCCHHHHHHHHH-hCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPFH---FVCACPKGFEPDKETVEKARK-AGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~~---~~~~~P~~~~~~~~~~~~~~~-~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
||+++| .+++..+++..+..-|.. +.+..+ +++..+.+.+ .+ .+..++|.+++++++|+|+.-.
T Consensus 2 ~IgiIG-~G~mG~aia~~L~~~g~~~~~i~v~~r-----~~~~~~~l~~~~~--~~~~~~~~~~~~~~aDvVilav 69 (258)
T PRK06476 2 KIGFIG-TGAITEAMVTGLLTSPADVSEIIVSPR-----NAQIAARLAERFP--KVRIAKDNQAVVDRSDVVFLAV 69 (258)
T ss_pred eEEEEC-cCHHHHHHHHHHHhCCCChheEEEECC-----CHHHHHHHHHHcC--CceEeCCHHHHHHhCCEEEEEe
Confidence 799999 588888888776655532 233322 2333333333 32 2456788899999999999864
No 264
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=76.46 E-value=8.2 Score=35.23 Aligned_cols=53 Identities=17% Similarity=0.115 Sum_probs=41.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
++.||+++|- +++..+++..+...|.++++..... ..+++++++++|+|+.-.
T Consensus 3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~~V~~~~r~~---------------------~~~~~~~~~~advvi~~v 55 (308)
T PRK14619 3 QPKTIAILGA-GAWGSTLAGLASANGHRVRVWSRRS---------------------GLSLAAVLADADVIVSAV 55 (308)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCCEEEEEeCCC---------------------CCCHHHHHhcCCEEEEEC
Confidence 5789999995 7899999888888898888776432 146788889999988763
No 265
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=75.66 E-value=26 Score=31.97 Aligned_cols=103 Identities=16% Similarity=0.147 Sum_probs=59.1
Q ss_pred CCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEE
Q 024871 83 TDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEI 162 (261)
Q Consensus 83 ~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~ 162 (261)
|...|-.|+|+|-. +-|.+...-++.+.|.. -+.. .+..+|+.+.+...+. . .. .+.
T Consensus 92 Sg~g~nl~~l~~~~----~~g~l~~~i~~visn~~-~~~~---~A~~~gIp~~~~~~~~-~-~~-------------~~~ 148 (280)
T TIGR00655 92 SKEDHCLGDLLWRW----YSGELDAEIALVISNHE-DLRS---LVERFGIPFHYIPATK-D-NR-------------VEH 148 (280)
T ss_pred cCCChhHHHHHHHH----HcCCCCcEEEEEEEcCh-hHHH---HHHHhCCCEEEcCCCC-c-ch-------------hhh
Confidence 44577888888852 23556544445555532 2222 3666777666553222 1 00 000
Q ss_pred EcCHHHHh--CCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCC
Q 024871 163 TNDPKEVV--QGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERG 225 (261)
Q Consensus 163 ~~d~~~a~--~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg 225 (261)
...+.+.+ .++|+|..-.|. ..+.++.++..+...+=+|| ||.+||
T Consensus 149 e~~~~~~l~~~~~Dlivlagym-----------------~il~~~~l~~~~~~iINiHpSLLP~f~G 198 (280)
T TIGR00655 149 EKRQLELLKQYQVDLVVLAKYM-----------------QILSPDFVKRYPNKIINIHHSFLPAFIG 198 (280)
T ss_pred HHHHHHHHHHhCCCEEEEeCch-----------------hhCCHHHHhhccCCEEEecCCcCCCCCC
Confidence 11122223 257999887652 34778888877778899999 899886
No 266
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=75.50 E-value=13 Score=33.83 Aligned_cols=101 Identities=19% Similarity=0.160 Sum_probs=62.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCC----cEEEEeCCCCCCCCHHHH-HHHHHhCCCeEEEEcCHHHHhCCCCEEEEeccc
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIP----FHFVCACPKGFEPDKETV-EKARKAGISKIEITNDPKEVVQGADVVYSDVWA 182 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g----~~~~~~~P~~~~~~~~~~-~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~ 182 (261)
.||+|+|- +|+..+++..+.+-| .++.++.|. ++.. ..++++|.. . +.|.+++++++|+|+.-.=+
T Consensus 2 ~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~-----~e~~~~l~~~~g~~-~--~~~~~~~~~~advv~LavKP 72 (266)
T COG0345 2 MKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRS-----EEKRAALAAEYGVV-T--TTDNQEAVEEADVVFLAVKP 72 (266)
T ss_pred ceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCC-----HHHHHHHHHHcCCc-c--cCcHHHHHhhCCEEEEEeCh
Confidence 58999996 788888887766655 567666553 3333 355677743 2 77888999999999987522
Q ss_pred CcchhHHHHHHHhhhc----C-------CcccHHHHHhcCCCcEEeeCCCC
Q 024871 183 SMGQKEEAAYRKQAFQ----G-------FQVDEFLMKLAGPKAYFMHCLPA 222 (261)
Q Consensus 183 ~~~~~~~~~~~~~~~~----~-------y~v~~~~~~~a~~~~~~mH~lP~ 222 (261)
| ..+....... + =+++-+.++..-++..+.-++|-
T Consensus 73 ---q--~~~~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPN 118 (266)
T COG0345 73 ---Q--DLEEVLSKLKPLTKDKLVISIAAGVSIETLERLLGGLRVVRVMPN 118 (266)
T ss_pred ---H--hHHHHHHHhhcccCCCEEEEEeCCCCHHHHHHHcCCCceEEeCCC
Confidence 1 1111111111 1 23566777765436666666663
No 267
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=75.26 E-value=37 Score=31.03 Aligned_cols=97 Identities=15% Similarity=0.170 Sum_probs=54.2
Q ss_pred CCcEEEEEcCCC-chHHHHHHHHhc--CCcEEEE--eCCCCCCCCHHHHHHHHHhCCCeEEEEcC----------HHHHh
Q 024871 106 EGTKVVYVGDGN-NIVHSWLLMASV--IPFHFVC--ACPKGFEPDKETVEKARKAGISKIEITND----------PKEVV 170 (261)
Q Consensus 106 ~~~~i~~vGd~~-~v~~S~~~~~~~--~g~~~~~--~~P~~~~~~~~~~~~~~~~g~~~i~~~~d----------~~~a~ 170 (261)
+.+||++.+-++ .-..+++..... ++.++.. +-++ +.-..|+++|+..+.+..+ +.+.+
T Consensus 88 ~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn~~------~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l 161 (286)
T PRK06027 88 ERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHD------DLRSLVERFGIPFHHVPVTKETKAEAEARLLELI 161 (286)
T ss_pred cCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEcCh------hHHHHHHHhCCCEEEeccCccccchhHHHHHHHH
Confidence 346777776542 344555544332 3444432 3232 2223466777543332211 11223
Q ss_pred C--CCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCC
Q 024871 171 Q--GADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERG 225 (261)
Q Consensus 171 ~--~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg 225 (261)
+ ++|+|..-.|. ..+.+++++..+...+=+|| ||.+||
T Consensus 162 ~~~~~Dlivlagy~-----------------~il~~~~l~~~~~~iiNiHpSLLP~yrG 203 (286)
T PRK06027 162 DEYQPDLVVLARYM-----------------QILSPDFVARFPGRIINIHHSFLPAFKG 203 (286)
T ss_pred HHhCCCEEEEecch-----------------hhcCHHHHhhccCCceecCcccCCCCCC
Confidence 2 57888776542 34778888888778899999 999886
No 268
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=75.03 E-value=20 Score=32.28 Aligned_cols=163 Identities=15% Similarity=0.156 Sum_probs=91.1
Q ss_pred ChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh-ccEEEEeeCCcchHHH-------HhhhCC-C-cE
Q 024871 9 SMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY-NDIIMARVFGHQDILD-------LAKFAT-V-PV 78 (261)
Q Consensus 9 StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~-~D~iv~R~~~~~~~~~-------~a~~~~-v-PV 78 (261)
..++-.=+..++..+|.+..+..-. + ..|.+++..+.+... ...+-+=.+--..+.. .|+..+ | -|
T Consensus 17 hS~SP~~hn~~~~~~gl~~~y~~~~---v-~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~~A~~igavNtv 92 (278)
T PRK00258 17 HSKSPLIHNAAFKQLGLDGVYLAIL---V-PPEDLEDAVKGFFALGGRGANVTVPFKEAAFALADELSERARLIGAVNTL 92 (278)
T ss_pred cccCHHHHHHHHHHcCCCcEEEEEe---c-CHHHHHHHHHHHHhCCCCEEEECcCCHHHHHHHhhcCCHHHHHhCCceEE
Confidence 4455566788999999988776332 1 135678877777664 3444443332222222 222221 1 13
Q ss_pred EeCCC-CCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCC-cEEEEeCCCCCCCCHHHHHHHHHh
Q 024871 79 INGLT-DYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIP-FHFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 79 INa~~-~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g-~~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
++-++ -..|=|=...=+.++.+..+ .+++++++++|- +.++.+.+..+...| .+++++.... +...+.+++.
T Consensus 93 ~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~----~~a~~l~~~~ 167 (278)
T PRK00258 93 VLEDGRLIGDNTDGIGFVRALEERLGVDLKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTV----ERAEELAKLF 167 (278)
T ss_pred EeeCCEEEEEcccHHHHHHHHHhccCCCCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCH----HHHHHHHHHh
Confidence 34222 22343433333333444344 689999999996 789999999888889 6888876532 1111122222
Q ss_pred CC-CeEEEEcCHHHHhCCCCEEEEec
Q 024871 156 GI-SKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 156 g~-~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+. ..+.+..+..+.+.++|+|+...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~DivInaT 193 (278)
T PRK00258 168 GALGKAELDLELQEELADFDLIINAT 193 (278)
T ss_pred hhccceeecccchhccccCCEEEECC
Confidence 21 11333224457789999999875
No 269
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=75.00 E-value=17 Score=35.31 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=49.1
Q ss_pred HHHHHHHh---CCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC
Q 024871 95 ALTIIEHV---GRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI 157 (261)
Q Consensus 95 l~Ti~e~~---g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~ 157 (261)
|..++++| ..|+|.||+.+--...-.--+++.+...|.++..++|+-+...+++...+.+.|+
T Consensus 33 l~~~~~~~~~~~pl~G~~i~~~~Hl~~~Ta~l~~~L~~~GA~v~~~~~np~Stqd~vaaaL~~~gi 98 (425)
T PRK05476 33 LMAIREEFAAEKPLKGARIAGCLHMTIQTAVLIETLKALGAEVRWASCNPFSTQDDVAAALAAAGI 98 (425)
T ss_pred HHHHHHHHhccCCCCCCEEEEEEeccccHHHHHHHHHHcCCEEEEEeCCCcccCHHHHHHHHHCCc
Confidence 55666766 3599999999887644444577778888999999998888888888887777774
No 270
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=74.82 E-value=14 Score=33.86 Aligned_cols=102 Identities=10% Similarity=0.071 Sum_probs=54.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcc
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMG 185 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~ 185 (261)
.|++++++|...|-. ..+..+.+.|+++.+++-+. ++. +. ...++.++.++++++||+|..-.=.+..
T Consensus 1 ~~~~~~v~ggd~r~~-~~~~~l~~~G~~v~~~g~~~----~~~----~~---~g~~~~~~~~~~~~~ad~ii~~~p~~~~ 68 (296)
T PRK08306 1 TGKHIAVIGGDARQL-ELIRKLVELGAKVSLVGFDQ----LDH----GF---TGATKSSSLEEALSDVDVIILPVPGTND 68 (296)
T ss_pred CCcEEEEEcCcHHHH-HHHHHHHHCCCEEEEEeccc----ccc----cc---CCceeeccHHHHhccCCEEEECCccccC
Confidence 478999999644432 23344456799988754221 100 01 2346677889999999999976311000
Q ss_pred hhHHHHHHHhhhcCCcccHHHHHhcCCCc-EEeeCCC
Q 024871 186 QKEEAAYRKQAFQGFQVDEFLMKLAGPKA-YFMHCLP 221 (261)
Q Consensus 186 ~~~~~~~~~~~~~~y~v~~~~~~~a~~~~-~~mH~lP 221 (261)
+. ... ..-.-.+..++.+.++..++.. +|.=+++
T Consensus 69 ~~-~i~-~~~~~~~~~~~~~~l~~l~~~~~v~~G~~~ 103 (296)
T PRK08306 69 EG-NVD-TVFSNEKLVLTEELLELTPEHCTIFSGIAN 103 (296)
T ss_pred Cc-eee-ccccccCCcchHHHHHhcCCCCEEEEecCC
Confidence 00 000 0000123456667777766665 3444443
No 271
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=74.58 E-value=88 Score=30.47 Aligned_cols=163 Identities=15% Similarity=0.076 Sum_probs=84.3
Q ss_pred HHHHhcCCeEEEe-CC---------CCcCC-CCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCC-CCC
Q 024871 18 TGFSLLGGHAIYL-GP---------DDIQM-GKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGL-TDY 85 (261)
Q Consensus 18 ~A~~~LGg~~~~l-~~---------~~s~~-~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~-~~~ 85 (261)
.=...+|.++..+ +. .-+.+ ..|-|++|.-+.=++-..+++-+.......+.+.+.-++|.|... --+
T Consensus 182 ~lL~~~Gl~v~~~~d~~~~d~~~~~~~~~~~~g~~~~~~i~~~~~A~~niv~~~~~~~~~A~~Le~~fGiPyi~~~~P~G 261 (454)
T cd01973 182 HYLSEMDVEANILMDTEDFDSPMLPDKSAVTHGNTTIEDIADSANAIATIALARYEGGKAAEFLQKKFDVPAILGPTPIG 261 (454)
T ss_pred HHHHHcCCCEEEeeccccccCCCCCcccccCCCCCCHHHHHHhhhCcEEEEEChhhhHHHHHHHHHHHCCCeeccCCCcC
Confidence 3345789998754 32 11222 236778887776666666666554455566677777788876532 111
Q ss_pred CChhH----HHHHHH-----------------HHHH-HhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEE--eCCC-
Q 024871 86 NHPCQ----IMADAL-----------------TIIE-HVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVC--ACPK- 140 (261)
Q Consensus 86 ~HPtQ----~L~Dl~-----------------Ti~e-~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~--~~P~- 140 (261)
-+-|. .|++++ .+.+ ....+.|+|++++||. ..+.++...+.-+|+.++. ++-.
T Consensus 262 ~~~T~~~l~~ia~~~g~~~~e~i~~er~~~~~~~~~~~~~~l~Gkrv~i~g~~-~~~~~l~~fl~elGm~~~~~~~~~~~ 340 (454)
T cd01973 262 IKNTDAFLQNIKELTGKPIPESLVRERGIAIDALADLAHMFFANKKVAIFGHP-DLVIGLAEFCLEVEMKPVLLLLGDDN 340 (454)
T ss_pred hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCH-HHHHHHHHHHHHCCCeEEEEEECCCC
Confidence 12221 122221 1111 0113789999999984 3456666655568887654 3211
Q ss_pred CCCCCHHHHHHHHH-hCC-CeEEEEcCHH---HHhC----CCCEEEEecc
Q 024871 141 GFEPDKETVEKARK-AGI-SKIEITNDPK---EVVQ----GADVVYSDVW 181 (261)
Q Consensus 141 ~~~~~~~~~~~~~~-~g~-~~i~~~~d~~---~a~~----~aDviy~~~w 181 (261)
...-..+.++.+.+ .+. ..+....|.. +.++ +.|+++...|
T Consensus 341 ~~~~~~~~~~~l~~~~~~~~~vi~~~d~~e~~~~i~~~~~~~dliig~s~ 390 (454)
T cd01973 341 SKYKKDPRIKALKEKADYDMEIVTNADLWELEKRIKNKGLELDLILGHSK 390 (454)
T ss_pred cccchhHHHHHHHhhcCCCceEEECCCHHHHHHHHHhcCCCCCEEEECCc
Confidence 11112233333322 121 2344444544 4453 3788888764
No 272
>PTZ00325 malate dehydrogenase; Provisional
Probab=74.23 E-value=16 Score=33.97 Aligned_cols=74 Identities=18% Similarity=0.107 Sum_probs=44.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCC--cEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcC---HHHHhCCCCEEEEe
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIP--FHFVCACPKGFEPDKETVEKARKAGISKIEITND---PKEVVQGADVVYSD 179 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g--~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d---~~~a~~~aDviy~~ 179 (261)
++..||+++|..++|..+++..+...+ -+++++--+ .+..+.++.........+.-..| ..++++++|+|+..
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~--~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVit 83 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV--GAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLIC 83 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC--CCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEEC
Confidence 567899999987889999888776544 366666431 12222222221111123332323 26899999998876
Q ss_pred c
Q 024871 180 V 180 (261)
Q Consensus 180 ~ 180 (261)
-
T Consensus 84 a 84 (321)
T PTZ00325 84 A 84 (321)
T ss_pred C
Confidence 3
No 273
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=74.11 E-value=1e+02 Score=31.05 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=68.0
Q ss_pred hHHHHhhh-CCCcEEeCCCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCC---chHHHHHHHHhcCCc-------E
Q 024871 66 DILDLAKF-ATVPVINGLTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGN---NIVHSWLLMASVIPF-------H 133 (261)
Q Consensus 66 ~~~~~a~~-~~vPVINa~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~---~v~~S~~~~~~~~g~-------~ 133 (261)
+..-+.++ ..+|++|=+ -..=-.-+|+=++.-.+..| +|+..||+++|-+. .++.-++......|. .
T Consensus 255 af~iL~kyr~~i~~FnDD-iQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~ 333 (559)
T PTZ00317 255 CFDLLERYQNKYRCFNDD-IQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKS 333 (559)
T ss_pred HHHHHHHhccCCCEeccc-chhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCe
Confidence 33444444 369999932 11123456777777766665 59999999999862 355555544444565 5
Q ss_pred EEEeCCCCCC-------CCHHHHHHHHHhCCCeEEEEcCHHHHhCCC--CEEEEec
Q 024871 134 FVCACPKGFE-------PDKETVEKARKAGISKIEITNDPKEVVQGA--DVVYSDV 180 (261)
Q Consensus 134 ~~~~~P~~~~-------~~~~~~~~~~~~g~~~i~~~~d~~~a~~~a--Dviy~~~ 180 (261)
++++--+|+- +.+....+++...........++.|+++++ ||++-.+
T Consensus 334 i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S 389 (559)
T PTZ00317 334 FYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLS 389 (559)
T ss_pred EEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEec
Confidence 6666555532 333333444432101101145899999999 9999875
No 274
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=73.90 E-value=19 Score=32.32 Aligned_cols=67 Identities=10% Similarity=0.138 Sum_probs=42.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCC----cEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIP----FHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g----~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+++|- +++..+++..+..-| .+++++.+.. ++..+...... ..+..+.|.+++++++|+|+.-.
T Consensus 2 ~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~----~~~~~~l~~~~-~~~~~~~~~~e~~~~aDvVilav 72 (277)
T PRK06928 2 EKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSK----NEHFNQLYDKY-PTVELADNEAEIFTKCDHSFICV 72 (277)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCc----HHHHHHHHHHc-CCeEEeCCHHHHHhhCCEEEEec
Confidence 37999994 778888877665544 4666665532 12222222221 13455778888999999988753
No 275
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=73.83 E-value=9.1 Score=36.19 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=40.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
..+|+++|..+.+..|++..+..-|.++++..+... +++++++++||+|+.-
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~---------------------~~~~~~~~~aDlVila 149 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW---------------------DRAEDILADAGMVIVS 149 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc---------------------hhHHHHHhcCCEEEEe
Confidence 378999998899999999999988988887765321 2455667777777764
No 276
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=73.50 E-value=57 Score=34.80 Aligned_cols=154 Identities=8% Similarity=0.025 Sum_probs=86.9
Q ss_pred HHHhcCCeEEEeC-CCCc-----------CCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCC---
Q 024871 19 GFSLLGGHAIYLG-PDDI-----------QMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLT--- 83 (261)
Q Consensus 19 A~~~LGg~~~~l~-~~~s-----------~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~--- 83 (261)
=...+|.+++.+. .+++ ....|-+++|..+.=++-+.+++ ........+.+.+.-++|.+....
T Consensus 666 lL~~~Gl~v~~vpd~s~~ldg~~~~~~~~~~~ggt~~eei~~~~~A~~niv~-~~~~~~~A~~Leek~GiP~~~~~~p~G 744 (917)
T PRK14477 666 IVEAFGLDPVVVPDISNALDGHIDETVSPLSTGGTTVEDIRAAGRSAATLAV-GDSLARAAEKLQERFGIPAYGFTSLTG 744 (917)
T ss_pred HHHHcCCceEEecCccccccCCCCCCccccCCCCCcHHHHHHhhhCcEEEEE-cHhHHHHHHHHHHHHCCCeeecCCCcc
Confidence 4568899997653 2211 12347788988887777777544 333334456677777899776321
Q ss_pred --CCCChhHHHHHHHH------HHHH-----------hCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCC
Q 024871 84 --DYNHPCQIMADALT------IIEH-----------VGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEP 144 (261)
Q Consensus 84 --~~~HPtQ~L~Dl~T------i~e~-----------~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~ 144 (261)
....=-+.|++++- +.+. .-.+.|+|+++.||.. .+.++...+.-+|+++..+.-....
T Consensus 745 ~~~Td~fl~~l~~~~g~~~~~~~~~~r~~~~d~~~d~~~~l~gkrvai~~~~d-~~~~l~~~l~elG~~v~~~~~~~~~- 822 (917)
T PRK14477 745 LKEVDRFMATLSALSGRPVPEKLRRWRSRLMDAMVDSHYQFGGKKVALALEPD-LLKALTSFLAGMGCEIQAAVAATRS- 822 (917)
T ss_pred hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeChH-HHHHHHHHHHHcCCeEEEEEeCCCh-
Confidence 11222233344431 1111 1237899999999753 4677777777899987765432221
Q ss_pred CHHHHHHHHHhCCCeEEEEcCH---HHHhCCCCEEEEecc
Q 024871 145 DKETVEKARKAGISKIEITNDP---KEVVQGADVVYSDVW 181 (261)
Q Consensus 145 ~~~~~~~~~~~g~~~i~~~~d~---~~a~~~aDviy~~~w 181 (261)
..++. .....+. ..|+ +....++|+|+...|
T Consensus 823 --~~~~~---l~~~~v~-v~D~~~~e~~~~~~dllig~s~ 856 (917)
T PRK14477 823 --RGLDR---LPAENVF-VGDLEDLETAAAGADLLVANSN 856 (917)
T ss_pred --HHHHh---CCcCcEE-eCCHHHHHhhccCCCEEEECch
Confidence 12221 1112222 3454 444567899998865
No 277
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=73.45 E-value=24 Score=30.69 Aligned_cols=61 Identities=18% Similarity=0.278 Sum_probs=43.3
Q ss_pred HhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcC
Q 024871 101 HVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITND 165 (261)
Q Consensus 101 ~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d 165 (261)
..|.+.+.+|+-. -.+|...|++..+..+|++++++.|++. ++..++.++..| +.+...+.
T Consensus 44 ~~g~~~~~~vv~~-ssGN~g~alA~~a~~~g~~~~v~~p~~~--~~~~~~~~~~~G-a~v~~~~~ 104 (244)
T cd00640 44 EEGKLPKGVIIES-TGGNTGIALAAAAARLGLKCTIVMPEGA--SPEKVAQMRALG-AEVVLVPG 104 (244)
T ss_pred HcCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHCC-CEEEEECC
Confidence 3454434554443 3479999999999999999999999875 455566778888 46665543
No 278
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=73.38 E-value=14 Score=33.64 Aligned_cols=69 Identities=23% Similarity=0.131 Sum_probs=48.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCH-HHHhCCCCEEEEec
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDP-KEVVQGADVVYSDV 180 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~-~~a~~~aDviy~~~ 180 (261)
..+|+++| .+.+..|++..+..-|..+.++ +........+.+.+.|. .-+.+.+. .+++.++|+|+.-.
T Consensus 3 ~~~v~IvG-~GliG~s~a~~l~~~g~~v~i~---g~d~~~~~~~~a~~lgv-~d~~~~~~~~~~~~~aD~Vivav 72 (279)
T COG0287 3 SMKVGIVG-LGLMGGSLARALKEAGLVVRII---GRDRSAATLKAALELGV-IDELTVAGLAEAAAEADLVIVAV 72 (279)
T ss_pred CcEEEEEC-CchHHHHHHHHHHHcCCeEEEE---eecCcHHHHHHHhhcCc-ccccccchhhhhcccCCEEEEec
Confidence 36788888 7889999999999888877655 34444444555555663 23344454 78899999988764
No 279
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=73.24 E-value=12 Score=31.38 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=20.2
Q ss_pred CcccHHHHHhcCCCcEEeeC--CCCCCCc
Q 024871 200 FQVDEFLMKLAGPKAYFMHC--LPAERGV 226 (261)
Q Consensus 200 y~v~~~~~~~a~~~~~~mH~--lP~~rg~ 226 (261)
+.+.+++++..+..++-+|| ||.+||.
T Consensus 90 ~il~~~~l~~~~~~~iNiHpslLP~yrG~ 118 (181)
T PF00551_consen 90 RILPKEFLSIPPYGIINIHPSLLPKYRGA 118 (181)
T ss_dssp S---HHHHHHSTTSEEEEESSSTTTTBSS
T ss_pred HHhhhhhhhcccccEEEEeecCCccCCCc
Confidence 34788999888888999999 6998863
No 280
>PRK08507 prephenate dehydrogenase; Validated
Probab=73.16 E-value=10 Score=33.86 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=42.4
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCc--EEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPF--HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
||++|| .+++..|++..+..-|. +++.. ..+++..+.+++.|. +....+++++. ++|+|+.-.
T Consensus 2 ~I~iIG-~G~mG~sla~~l~~~g~~~~v~~~-----d~~~~~~~~~~~~g~--~~~~~~~~~~~-~aD~Vilav 66 (275)
T PRK08507 2 KIGIIG-LGLMGGSLGLALKEKGLISKVYGY-----DHNELHLKKALELGL--VDEIVSFEELK-KCDVIFLAI 66 (275)
T ss_pred EEEEEc-cCHHHHHHHHHHHhcCCCCEEEEE-----cCCHHHHHHHHHCCC--CcccCCHHHHh-cCCEEEEeC
Confidence 799999 58899999988877664 55544 334455556666663 22344677755 599988763
No 281
>PRK06223 malate dehydrogenase; Reviewed
Probab=73.08 E-value=19 Score=32.70 Aligned_cols=70 Identities=24% Similarity=0.245 Sum_probs=41.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHH---HhC-CCeEEEEcCHHHHhCCCCEEEEe
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKAR---KAG-ISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~---~~g-~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
.||+++|- +++..+++..++..|. ++++.-...-......++... ..+ ..+++.+.|. +++++||+|+..
T Consensus 3 ~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~ 77 (307)
T PRK06223 3 KKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVIT 77 (307)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEEC
Confidence 58999997 7777777766666553 777775432222222222111 111 1345555666 579999999975
No 282
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=73.03 E-value=39 Score=30.03 Aligned_cols=72 Identities=11% Similarity=0.102 Sum_probs=42.5
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCc------hHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCC
Q 024871 85 YNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNN------IVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGIS 158 (261)
Q Consensus 85 ~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~------v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~ 158 (261)
..|.+-=|--.......+=. .++||+||--... -..+.-.....+|+++....
T Consensus 10 ~~~~~~~l~~~~~~~~~~~~-~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~-------------------- 68 (233)
T PRK05282 10 TLPGTGYLEHALPLIAELLA-GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIH-------------------- 68 (233)
T ss_pred CCCCCchHHHHHHHHHHHHc-CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEec--------------------
Confidence 34444444444444443311 5789999986532 24555566677787755331
Q ss_pred eEEEEcCHHHHhCCCCEEEEec
Q 024871 159 KIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 159 ~i~~~~d~~~a~~~aDviy~~~ 180 (261)
..+++.+.+.+||+||...
T Consensus 69 ---~~~d~~~~l~~ad~I~v~G 87 (233)
T PRK05282 69 ---RVADPVAAIENAEAIFVGG 87 (233)
T ss_pred ---cchhhHHHHhcCCEEEECC
Confidence 1134567899999999974
No 283
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=72.88 E-value=22 Score=33.37 Aligned_cols=70 Identities=16% Similarity=0.077 Sum_probs=42.1
Q ss_pred EEEEEcCCCchHHHHHHHHhcCC--------cEEEEeCCCCCCCCHHHHHHHHHh--------C---CCeEEEEcCHHHH
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIP--------FHFVCACPKGFEPDKETVEKARKA--------G---ISKIEITNDPKEV 169 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g--------~~~~~~~P~~~~~~~~~~~~~~~~--------g---~~~i~~~~d~~~a 169 (261)
||+++|- ++....++..++.-| .++.+-+.++..-.+++.+..++. | ..++..++|++++
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea 79 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence 5889996 555555555544433 667666543211133344433321 1 1347788999999
Q ss_pred hCCCCEEEEe
Q 024871 170 VQGADVVYSD 179 (261)
Q Consensus 170 ~~~aDviy~~ 179 (261)
+++||+|+.-
T Consensus 80 l~~ADiIIlA 89 (342)
T TIGR03376 80 AKGADILVFV 89 (342)
T ss_pred HhcCCEEEEE
Confidence 9999988775
No 284
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=72.74 E-value=16 Score=34.31 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=46.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHH-hcCCc-EEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMA-SVIPF-HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~-~~~g~-~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
=+-..+++||- +..++-.++++ ..++. ++.+.++..- -.+.+...+++.+...+.-.+|.++++++||+|.|.+
T Consensus 128 ~da~~laiIGa-G~qA~~ql~a~~~v~~~~~I~i~~r~~~-~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T 203 (330)
T COG2423 128 KDASTLAIIGA-GAQARTQLEALKAVRDIREIRVYSRDPE-AAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTAT 203 (330)
T ss_pred CCCcEEEEECC-cHHHHHHHHHHHhhCCccEEEEEcCCHH-HHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEec
Confidence 34578999997 45555555554 34554 5665555321 1122223333444345777889999999999999964
No 285
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=72.74 E-value=17 Score=31.06 Aligned_cols=100 Identities=12% Similarity=0.116 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhh-hccEEEEeeCCcch-HHHHhhhCCCcEEeCCCCCC--
Q 024871 11 RTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCR-YNDIIMARVFGHQD-ILDLAKFATVPVINGLTDYN-- 86 (261)
Q Consensus 11 RTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~-~~D~iv~R~~~~~~-~~~~a~~~~vPVINa~~~~~-- 86 (261)
..+..++.++..+|..++...... ..+...+..+.+-. -+|.|++....... ..+.++..++|||-.+.+..
T Consensus 16 ~~~~~i~~~a~~~g~~~~~~~~~~----~~~~~~~~~~~l~~~~~dgiii~~~~~~~~~l~~~~~~~ipvV~~~~~~~~~ 91 (267)
T cd06283 16 LVLKGIEDVCRAHGYQVLVCNSDN----DPEKEKEYLESLLAYQVDGLIVNPTGNNKELYQRLAKNGKPVVLVDRKIPEL 91 (267)
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCC----CHHHHHHHHHHHHHcCcCEEEEeCCCCChHHHHHHhcCCCCEEEEcCCCCCC
Confidence 356688899999999987764431 12233344444444 48999997654332 22334567899776433211
Q ss_pred -ChhHHHHHH----HHHHHHhCCCCCcEEEEEcC
Q 024871 87 -HPCQIMADA----LTIIEHVGRLEGTKVVYVGD 115 (261)
Q Consensus 87 -HPtQ~L~Dl----~Ti~e~~g~l~~~~i~~vGd 115 (261)
.| .+-.|- ..+-+++......+|+++|+
T Consensus 92 ~~~-~v~~d~~~~g~~~~~~l~~~g~~~i~~l~~ 124 (267)
T cd06283 92 GVD-TVTLDNYEAAKEAVDHLIEKGYERILFVTE 124 (267)
T ss_pred CCC-EEEeccHHHHHHHHHHHHHcCCCcEEEEec
Confidence 12 122232 12222332233478888865
No 286
>PLN02858 fructose-bisphosphate aldolase
Probab=72.73 E-value=24 Score=39.24 Aligned_cols=98 Identities=17% Similarity=0.107 Sum_probs=64.5
Q ss_pred HhhhCCCcEEeCCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHH
Q 024871 70 LAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETV 149 (261)
Q Consensus 70 ~a~~~~vPVINa~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~ 149 (261)
+.+..++++..+.+....----++|=++|... ..++|+|+| .+++...++..+...|.++++.. ..++..
T Consensus 291 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~IGfIG-lG~MG~~mA~~L~~~G~~V~v~d-----r~~~~~ 360 (1378)
T PLN02858 291 WEKVFGVNILEAANRELYKPEDLAKQITMQAK----PVKRIGFIG-LGAMGFGMASHLLKSNFSVCGYD-----VYKPTL 360 (1378)
T ss_pred HHHHcCCCccccccccccChHHHHHHhhcccc----CCCeEEEEC-chHHHHHHHHHHHHCCCEEEEEe-----CCHHHH
Confidence 34445666666654333223356777777642 257899999 57888888887778888876543 333444
Q ss_pred HHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 150 EKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 150 ~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+.+.+.|. ...+++.++++++|+|++-.
T Consensus 361 ~~l~~~Ga---~~~~s~~e~~~~aDvVi~~V 388 (1378)
T PLN02858 361 VRFENAGG---LAGNSPAEVAKDVDVLVIMV 388 (1378)
T ss_pred HHHHHcCC---eecCCHHHHHhcCCEEEEec
Confidence 44455552 34678999999999999853
No 287
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=72.71 E-value=35 Score=33.91 Aligned_cols=94 Identities=12% Similarity=0.090 Sum_probs=59.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEE----------------cCH--
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEIT----------------NDP-- 166 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~----------------~d~-- 166 (261)
..+.||+++|. +.+...-+..+..+|..++.+ ...++.++.+++.|...+.+. ++.
T Consensus 163 ~pg~kVlViGa-G~iGL~Ai~~Ak~lGA~V~a~-----D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~ 236 (509)
T PRK09424 163 VPPAKVLVIGA-GVAGLAAIGAAGSLGAIVRAF-----DTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIK 236 (509)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEE-----eCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHH
Confidence 46789999996 778888888899999976544 345667778888884323221 111
Q ss_pred ------HHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcE
Q 024871 167 ------KEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAY 215 (261)
Q Consensus 167 ------~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~ 215 (261)
.+.++++|+++... +...+ ..+--++++.++..++...
T Consensus 237 ~~~~~~~~~~~gaDVVIeta----g~pg~-------~aP~lit~~~v~~mkpGgv 280 (509)
T PRK09424 237 AEMALFAEQAKEVDIIITTA----LIPGK-------PAPKLITAEMVASMKPGSV 280 (509)
T ss_pred HHHHHHHhccCCCCEEEECC----CCCcc-------cCcchHHHHHHHhcCCCCE
Confidence 12236899999986 22110 1133346777777766544
No 288
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=72.47 E-value=27 Score=27.55 Aligned_cols=71 Identities=20% Similarity=0.127 Sum_probs=43.6
Q ss_pred cEEEEEcCCCchHHHHH-HHH-hcC---CcEEEEeCCCCCCCCHHHHHHHHHhCCCeEE--EEcCH-HHHhCCCCEEEEe
Q 024871 108 TKVVYVGDGNNIVHSWL-LMA-SVI---PFHFVCACPKGFEPDKETVEKARKAGISKIE--ITNDP-KEVVQGADVVYSD 179 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~-~~~-~~~---g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~--~~~d~-~~a~~~aDviy~~ 179 (261)
+||.||.- +|+++|-+ ++. ..+ ++++.-++-..-.+++..++.+++.|+. +. ....+ +..++++|+|++-
T Consensus 1 ~~vlfvC~-~N~cRS~mAEa~~~~~~~~~~~v~SAG~~~~~~~p~a~~~l~e~Gid-~~~~~s~~l~~~~~~~~D~iitm 78 (126)
T TIGR02689 1 KKVMFVCK-RNSCRSQMAEGFAKTLGAGNIAVTSAGLEVSRVHPTAIEVMSEIGID-ISGQTSKPLENFHPEDYDVVISL 78 (126)
T ss_pred CeEEEEcC-CcHHHHHHHHHHHHHhcCCCEEEEcCcCCCCCCCHHHHHHHHHhCCC-cccCccccCChhHhcCCCEEEEe
Confidence 47888885 77888854 332 222 2455555543346788888888888852 21 11222 3457899999996
Q ss_pred c
Q 024871 180 V 180 (261)
Q Consensus 180 ~ 180 (261)
.
T Consensus 79 ~ 79 (126)
T TIGR02689 79 C 79 (126)
T ss_pred C
Confidence 4
No 289
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=72.38 E-value=34 Score=31.41 Aligned_cols=71 Identities=14% Similarity=0.125 Sum_probs=43.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHH---hC-CCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARK---AG-ISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~---~g-~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+++|- ++|.-+.+..++..|. +++++-...-......++.... .. ...+..+.|.++ +++||+|+...
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIita 77 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITA 77 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcC
Confidence 48999996 7788887777766554 7776654221111121211111 11 135777788776 89999999874
No 290
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=72.35 E-value=21 Score=33.10 Aligned_cols=73 Identities=19% Similarity=0.094 Sum_probs=42.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCC-------cEEEEeC--CCCCCCCHHHHHHHHH---hCCCeEEEEcCHHHHhCCCC
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIP-------FHFVCAC--PKGFEPDKETVEKARK---AGISKIEITNDPKEVVQGAD 174 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g-------~~~~~~~--P~~~~~~~~~~~~~~~---~g~~~i~~~~d~~~a~~~aD 174 (261)
-.||+++|-.++|..+++..+...+ .++++.- |+.-......++.... .. +.+....++.++++++|
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~-~~~~~~~~~~~~l~~aD 80 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLL-KSVVATTDPEEAFKDVD 80 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhcccccc-CCceecCCHHHHhCCCC
Confidence 3689999987888888877665422 3555442 2111112212222211 11 24555678889999999
Q ss_pred EEEEec
Q 024871 175 VVYSDV 180 (261)
Q Consensus 175 viy~~~ 180 (261)
+|+.+.
T Consensus 81 iVI~tA 86 (325)
T cd01336 81 VAILVG 86 (325)
T ss_pred EEEEeC
Confidence 988763
No 291
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=72.15 E-value=12 Score=37.80 Aligned_cols=94 Identities=22% Similarity=0.278 Sum_probs=62.4
Q ss_pred CChhHHHHHHHHHHHHhCC--CCCcEEEEEcCC---CchHHHH-HHHHhcCCc-EEEEeCC----CCCCCCHHHHHHHHH
Q 024871 86 NHPCQIMADALTIIEHVGR--LEGTKVVYVGDG---NNIVHSW-LLMASVIPF-HFVCACP----KGFEPDKETVEKARK 154 (261)
Q Consensus 86 ~HPtQ~L~Dl~Ti~e~~g~--l~~~~i~~vGd~---~~v~~S~-~~~~~~~g~-~~~~~~P----~~~~~~~~~~~~~~~ 154 (261)
.+| ..|-|+-...++... .++.+|++.||. +-+..|+ ...+..+|. ++.+.-| +||.+.++.++.+.+
T Consensus 47 ~~P-~~l~~m~~a~~ri~~ai~~~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~~IP~R~~eGYGl~~~~i~~~~~ 125 (575)
T PRK11070 47 LPW-QQLSGIEKAVELLYNALREGTRIIVVGDFDADGATSTALSVLALRSLGCSNVDYLVPNRFEDGYGLSPEVVDQAHA 125 (575)
T ss_pred CCh-HHhhCHHHHHHHHHHHHHCCCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEEEeCCCCcCCCCCCHHHHHHHHh
Confidence 345 668888777665532 578999999984 3355555 355677887 5655557 688999998888777
Q ss_pred hCCCeEEEEcC-----HHHH----hCCCCEEEEecc
Q 024871 155 AGISKIEITND-----PKEV----VQGADVVYSDVW 181 (261)
Q Consensus 155 ~g~~~i~~~~d-----~~~a----~~~aDviy~~~w 181 (261)
.|. .+.++-| .++. -.+.|||+||..
T Consensus 126 ~~~-~LiItvD~Gi~~~e~i~~a~~~gidvIVtDHH 160 (575)
T PRK11070 126 RGA-QLIVTVDNGISSHAGVAHAHALGIPVLVTDHH 160 (575)
T ss_pred cCC-CEEEEEcCCcCCHHHHHHHHHCCCCEEEECCC
Confidence 663 4444333 2221 137899999963
No 292
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=72.05 E-value=31 Score=29.40 Aligned_cols=102 Identities=10% Similarity=0.044 Sum_probs=56.2
Q ss_pred hHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhh-hccEEEEeeCC-cchHHHHhhhCCCcEEeCCC--CCCC
Q 024871 12 TRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCR-YNDIIMARVFG-HQDILDLAKFATVPVINGLT--DYNH 87 (261)
Q Consensus 12 TR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~-~~D~iv~R~~~-~~~~~~~a~~~~vPVINa~~--~~~H 87 (261)
..-+++.++..+|.+++...... ..+...+..+.+.. -+|.|++=... ........+..++|||-.+. ...+
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~ipvv~~~~~~~~~~ 92 (268)
T cd01575 17 VLQGISDVLEAAGYQLLLGNTGY----SPEREEELLRTLLSRRPAGLILTGLEHTERTRQLLRAAGIPVVEIMDLPPDPI 92 (268)
T ss_pred HHHHHHHHHHHcCCEEEEecCCC----CchhHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 44578889999999988765431 23334455555544 48977663322 22344445567899886321 1222
Q ss_pred hhHHHHHHHHH----HHHhCCCCCcEEEEEcCCC
Q 024871 88 PCQIMADALTI----IEHVGRLEGTKVVYVGDGN 117 (261)
Q Consensus 88 PtQ~L~Dl~Ti----~e~~g~l~~~~i~~vGd~~ 117 (261)
....-.|-+.. -+++......+|+++|+..
T Consensus 93 ~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~ 126 (268)
T cd01575 93 DMAVGFSHAEAGRAMARHLLARGYRRIGFLGARM 126 (268)
T ss_pred CCeEEeCcHHHHHHHHHHHHHCCCCcEEEecCCC
Confidence 22344443222 2233223357899999753
No 293
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=72.03 E-value=14 Score=35.18 Aligned_cols=64 Identities=19% Similarity=0.080 Sum_probs=39.3
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH----------------hCCCeEEEEcCHHHHhCC
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK----------------AGISKIEITNDPKEVVQG 172 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~----------------~g~~~i~~~~d~~~a~~~ 172 (261)
||+++|- +.|.-.++..++. |.+++.+- .+++.++.+++ .+ ..+..+.+..+++++
T Consensus 2 kI~VIGl-GyvGl~~A~~lA~-G~~VigvD-----~d~~kv~~l~~g~~~~~e~~l~~~l~~~~-~~l~~t~~~~~~~~~ 73 (388)
T PRK15057 2 KITISGT-GYVGLSNGLLIAQ-NHEVVALD-----ILPSRVAMLNDRISPIVDKEIQQFLQSDK-IHFNATLDKNEAYRD 73 (388)
T ss_pred EEEEECC-CHHHHHHHHHHHh-CCcEEEEE-----CCHHHHHHHHcCCCCCCCcCHHHHHHhCC-CcEEEecchhhhhcC
Confidence 7999995 5555555544443 77766443 23333332222 22 356667778899999
Q ss_pred CCEEEEec
Q 024871 173 ADVVYSDV 180 (261)
Q Consensus 173 aDviy~~~ 180 (261)
+|+|+.-.
T Consensus 74 ad~vii~V 81 (388)
T PRK15057 74 ADYVIIAT 81 (388)
T ss_pred CCEEEEeC
Confidence 99998854
No 294
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=72.02 E-value=31 Score=31.63 Aligned_cols=72 Identities=18% Similarity=0.057 Sum_probs=44.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCC--cEEEEeCCCCCCCCHHHHHHHHHhC--CCeEEEEcCHHHHhCCCCEEEEecc
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIP--FHFVCACPKGFEPDKETVEKARKAG--ISKIEITNDPKEVVQGADVVYSDVW 181 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g--~~~~~~~P~~~~~~~~~~~~~~~~g--~~~i~~~~d~~~a~~~aDviy~~~w 181 (261)
.||+++|- +.|.-+.+..+...| -+++++.+..-.+..+..+...... ......+.| .+++++||+++....
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d-~~~l~~aDiViita~ 76 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGD-YADCKGADVVVITAG 76 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCC-HHHhCCCCEEEEccC
Confidence 37999996 778888888877777 4787776543333333333221110 011222445 467999999999764
No 295
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=71.94 E-value=28 Score=32.85 Aligned_cols=116 Identities=12% Similarity=0.006 Sum_probs=69.1
Q ss_pred HHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCCh----hHH
Q 024871 16 FETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHP----CQI 91 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HP----tQ~ 91 (261)
...=...+|.++... +..|-|++|.-+.-++-..+++.+.......+.+.+..++|.+...--..+. .+.
T Consensus 178 l~~lL~~~Gi~~~~~------~~~~~~~~~i~~~~~A~~niv~~~~~~~~~a~~L~~r~GiP~~~~~p~G~~~t~~~l~~ 251 (406)
T cd01967 178 IKPLLEELGIRVNAT------FTGDGTVDELRRAHRAKLNLVHCSRSMNYLAREMEERYGIPYMEVNFYGFEDTSESLRK 251 (406)
T ss_pred HHHHHHHcCCEEEEE------eCCCCCHHHHhhCccCCEEEEEChHHHHHHHHHHHHhhCCCEEEecCCcHHHHHHHHHH
Confidence 344456677777643 2346778887775555556665554555567788888899988743112222 333
Q ss_pred HHHHHHHH------------------H-HhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeC
Q 024871 92 MADALTII------------------E-HVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCAC 138 (261)
Q Consensus 92 L~Dl~Ti~------------------e-~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~ 138 (261)
|++++-.. + ....+.|+|+++.++.... .+++.++.-+|++++.++
T Consensus 252 l~~~lg~~~~~~~~i~~~~~~~~~~l~~~~~~l~gkrv~I~~~~~~~-~~~~~~l~elG~~v~~~~ 316 (406)
T cd01967 252 IAKFFGDEEKAEEVIAEEEARIKPELEKYRERLKGKKVIIYTGGARS-WHVIAALRELGMEVVAAG 316 (406)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEccCcch-HHHHHHHHHcCCEEEEEE
Confidence 44443221 0 1124789999998875544 334467778999976553
No 296
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.88 E-value=26 Score=33.57 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=55.6
Q ss_pred CChhHHHHHHHHHHHHhCCCCCcEEEEEcCC--CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCC-eEEE
Q 024871 86 NHPCQIMADALTIIEHVGRLEGTKVVYVGDG--NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGIS-KIEI 162 (261)
Q Consensus 86 ~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~--~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~-~i~~ 162 (261)
.|..+++.-++ +. +++.++.++|+. ..-...++..+....-.++++++. .+.+.+.++..+.. .+..
T Consensus 334 a~N~~s~~~al---~~---l~~~~i~IlGg~~~~~d~~~~~~~l~~~~~~vi~~g~~----~~~l~~~l~~~~~~~~~~~ 403 (459)
T PRK02705 334 ATNYDAAEVGL---KA---VPGPVILIAGGEAKQGDDSAWLKQIKAKAAAVLLFGEA----APTLAQRLQESGYTGEYEI 403 (459)
T ss_pred CCCHHHHHHHH---Hh---CCCCeEEEecCccCCCCHHHHHHHHHhheeEEEEECCC----HHHHHHHHHhcCCCcceEE
Confidence 57666655443 22 346788899852 223344554444333455566532 22333334433321 2667
Q ss_pred EcCHHHHhCC---------CCEEEEecc-cCcchhHHHHHHHhhhc
Q 024871 163 TNDPKEVVQG---------ADVVYSDVW-ASMGQKEEAAYRKQAFQ 198 (261)
Q Consensus 163 ~~d~~~a~~~---------aDviy~~~w-~~~~~~~~~~~~~~~~~ 198 (261)
++|+++|++. .|+|+.-++ .|+.|-..+++|-+.|.
T Consensus 404 ~~~~~eA~~~a~~~a~~g~~~~vllsp~~as~d~f~~~~~rg~~F~ 449 (459)
T PRK02705 404 VETLDEAVPRAFELAKELQAKSVLLSPACASFDQYKNFEERGDHFR 449 (459)
T ss_pred cCCHHHHHHHHHHHhCCCCCCEEEechhhhhhccccCHHHHHHHHH
Confidence 8899888632 267877664 57776555555555553
No 297
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=71.53 E-value=56 Score=29.85 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=29.4
Q ss_pred CCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCC
Q 024871 172 GADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERG 225 (261)
Q Consensus 172 ~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg 225 (261)
++|+|++-.|. ..++++.++..+...+=+|| ||.+||
T Consensus 165 ~~Dlivlagy~-----------------~il~~~~l~~~~~~iiNiHpSLLP~~rG 203 (286)
T PRK13011 165 GAELVVLARYM-----------------QVLSPELCRKLAGRAINIHHSFLPGFKG 203 (286)
T ss_pred CcCEEEEeChh-----------------hhCCHHHHhhccCCeEEeccccCCCCCC
Confidence 57888887652 34788888888888899998 999886
No 298
>PRK09414 glutamate dehydrogenase; Provisional
Probab=71.43 E-value=18 Score=35.33 Aligned_cols=68 Identities=16% Similarity=0.130 Sum_probs=44.8
Q ss_pred cEEeCCCCCCChhHHHHHHHHHH---HHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeC--------CCCCCC
Q 024871 77 PVINGLTDYNHPCQIMADALTII---EHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCAC--------PKGFEP 144 (261)
Q Consensus 77 PVINa~~~~~HPtQ~L~Dl~Ti~---e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~--------P~~~~~ 144 (261)
|+--+++..--|.-+.-=+++++ ++++ +++|+||++.|= +||....+..+..+|.+++.++ |+|+.+
T Consensus 198 p~~~gGs~gr~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqGf-GnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~ 276 (445)
T PRK09414 198 GLSFGGSLIRTEATGYGLVYFAEEMLKARGDSFEGKRVVVSGS-GNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDL 276 (445)
T ss_pred CcccCCCCCCCCcccHHHHHHHHHHHHhcCCCcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCH
Confidence 65444332222233333344443 3344 589999999995 8999999999989999988664 677754
Q ss_pred C
Q 024871 145 D 145 (261)
Q Consensus 145 ~ 145 (261)
.
T Consensus 277 ~ 277 (445)
T PRK09414 277 E 277 (445)
T ss_pred H
Confidence 3
No 299
>PRK07680 late competence protein ComER; Validated
Probab=71.32 E-value=27 Score=31.10 Aligned_cols=64 Identities=11% Similarity=0.153 Sum_probs=42.3
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCc----EEEEeCCCCCCCCHHHHHHHHH-hCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPF----HFVCACPKGFEPDKETVEKARK-AGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~----~~~~~~P~~~~~~~~~~~~~~~-~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+|+++| .+++..+++..+..-|. ++.++.+. ++-.+.+.+ .+ .+..+.+.+++++++|+|+...
T Consensus 2 ~I~iIG-~G~mG~ala~~L~~~g~~~~~~v~v~~r~-----~~~~~~~~~~~~--g~~~~~~~~~~~~~aDiVilav 70 (273)
T PRK07680 2 NIGFIG-TGNMGTILIEAFLESGAVKPSQLTITNRT-----PAKAYHIKERYP--GIHVAKTIEEVISQSDLIFICV 70 (273)
T ss_pred EEEEEC-ccHHHHHHHHHHHHCCCCCcceEEEECCC-----HHHHHHHHHHcC--CeEEECCHHHHHHhCCEEEEec
Confidence 699999 58888888877665552 56655442 222232322 32 2466788889999999988764
No 300
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=71.17 E-value=91 Score=29.16 Aligned_cols=127 Identities=16% Similarity=0.187 Sum_probs=76.1
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhc--cEEEEeeCCcc----hHHHHhhhC
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYN--DIIMARVFGHQ----DILDLAKFA 74 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~--D~iv~R~~~~~----~~~~~a~~~ 74 (261)
+|.||++.+..-..+|..|+.++.... .+.+..-.+..+.|. ++.+.++.+. +++.|=.+.+. .+..++...
T Consensus 2 iG~if~~~~~~~~~af~~av~~~N~~~-~l~~~~~~~~~~dsf-~~~~~~C~~~~~gV~AI~Gp~s~~~a~~v~sic~~~ 79 (364)
T cd06390 2 IGGLFPNQQSQEHAAFRFALSQLTEPP-KLLPQIDIVNISDSF-EMTYTFCSQFSKGVYAIFGFYDRKTVNMLTSFCGAL 79 (364)
T ss_pred CceeeCCCChHHHHHHHHHHHHhccCc-ccccceEEeccccHH-HHHHHHHHHhhcCceEEEccCChhHHHHHHHhhcCC
Confidence 578999988889999999999988753 333332223333333 2444444442 45555455433 356777778
Q ss_pred CCcEEeC-CC-C-------CCCh--hHHHHHHHHHHHHhCCCCCcEEEEEcCC---CchHHHHHHHHhcCCcEEE
Q 024871 75 TVPVING-LT-D-------YNHP--CQIMADALTIIEHVGRLEGTKVVYVGDG---NNIVHSWLLMASVIPFHFV 135 (261)
Q Consensus 75 ~vPVINa-~~-~-------~~HP--tQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~---~~v~~S~~~~~~~~g~~~~ 135 (261)
.||.|.- .. . .-|| .+|++|+. ++ ++..+|+++-|. .+.+..+...+...|..+.
T Consensus 80 ~vP~i~~~~~~~~~~~~~i~~~P~~~~Ai~diI---~~---~~W~~v~iIYd~d~g~~~lq~l~~~~~~~~~~I~ 148 (364)
T cd06390 80 HVCFITPSFPVDTSNQFVLQLRPELQDALISVI---EH---YKWQKFVYIYDADRGLSVLQKVLDTAAEKNWQVT 148 (364)
T ss_pred CCCceecCCCCCCCCceEEEeChhHHHHHHHHH---HH---cCCcEEEEEEeCCccHHHHHHHHHhhhccCceee
Confidence 8998862 11 0 1244 34555654 33 346777777663 3466777777777776554
No 301
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=71.06 E-value=21 Score=31.48 Aligned_cols=35 Identities=17% Similarity=0.060 Sum_probs=29.7
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeC
Q 024871 103 GRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCAC 138 (261)
Q Consensus 103 g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~ 138 (261)
.++.|++|++.| .++|...+++.+...|+.++-++
T Consensus 27 ~~l~~~~v~I~G-~G~VG~~~a~~L~~~g~~vv~v~ 61 (227)
T cd01076 27 IGLAGARVAIQG-FGNVGSHAARFLHEAGAKVVAVS 61 (227)
T ss_pred CCccCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEE
Confidence 469999999999 48999999999888899888443
No 302
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=70.91 E-value=22 Score=34.77 Aligned_cols=126 Identities=18% Similarity=0.235 Sum_probs=81.8
Q ss_pred CCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhh------hccE-EEEeeCCcc--hHHHHhhhCCCc
Q 024871 7 KPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCR------YNDI-IMARVFGHQ--DILDLAKFATVP 77 (261)
Q Consensus 7 ~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~------~~D~-iv~R~~~~~--~~~~~a~~~~vP 77 (261)
++..|+-|+|| .+||..-+|.+ .|.|+.+.=.-++. -.+. +|+=.+..+ ++..+|+.+++|
T Consensus 239 ~~~~~~~C~fE---------yVYFARPDS~I-dg~sVy~~R~~mG~~La~e~~~eaDvVipVPDSg~~aAig~A~~sGiP 308 (470)
T COG0034 239 EPPRRAPCSFE---------YVYFARPDSVI-DGISVYEARKRMGEKLAEEIPVEADVVIPVPDSGRPAAIGYARASGIP 308 (470)
T ss_pred CCCCCccceEE---------EEEeecCcccc-CCeeHHHHHHHHHHHHHHhCCccccEEEecCCCChHHHHHHHHHhCCc
Confidence 33477888998 46664434444 48888886554443 1233 556667665 467889999999
Q ss_pred -----EEeC--CCCCCChhHHHHHHHHHHHHh----CCCCCcEEEEEcCC---CchHHHHHHHHhcCC---cEEEEeCCC
Q 024871 78 -----VING--LTDYNHPCQIMADALTIIEHV----GRLEGTKVVYVGDG---NNIVHSWLLMASVIP---FHFVCACPK 140 (261)
Q Consensus 78 -----VINa--~~~~~HPtQ~L~Dl~Ti~e~~----g~l~~~~i~~vGd~---~~v~~S~~~~~~~~g---~~~~~~~P~ 140 (261)
|=|- +-.---|+|.+=-. .++.++ .-++||+|++|-|. +.+..-.+.++...| +|+..++|+
T Consensus 309 y~~GliKNrYvgRTFI~P~q~~R~~-~Vr~KLnpvr~~v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvriasP~ 387 (470)
T COG0034 309 YEEGLIKNRYVGRTFIMPTQELREK-GVRLKLNPVREVVKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIASPP 387 (470)
T ss_pred hhhccccccccceeeeCCcHHHHHh-hhhhhcCchHHHhCCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEecCCC
Confidence 4453 22445899976432 122222 23789999999994 567777788887777 578888886
Q ss_pred CCC
Q 024871 141 GFE 143 (261)
Q Consensus 141 ~~~ 143 (261)
--.
T Consensus 388 i~~ 390 (470)
T COG0034 388 IRY 390 (470)
T ss_pred ccC
Confidence 533
No 303
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=70.84 E-value=20 Score=34.42 Aligned_cols=70 Identities=16% Similarity=0.077 Sum_probs=44.0
Q ss_pred CCCCCcEEEEEcC-----CCchHHH----HHHHHhcCC-cEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCC
Q 024871 103 GRLEGTKVVYVGD-----GNNIVHS----WLLMASVIP-FHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQG 172 (261)
Q Consensus 103 g~l~~~~i~~vGd-----~~~v~~S----~~~~~~~~g-~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~ 172 (261)
++++|++|++.|= .+.+.+| ++..+...| .++...-|.- ++. -.... ..+. .+++++++++
T Consensus 316 ~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~---~~~----~~~~~-~~~~-~~~~~~~~~~ 386 (415)
T PRK11064 316 KRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNI---HQL----PKKLD-GLVT-LVSLDEALAT 386 (415)
T ss_pred cCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCC---Cch----hhhcc-Ccee-eCCHHHHHhC
Confidence 4588999999992 1234444 566666675 8888777752 110 00111 1223 4789999999
Q ss_pred CCEEEEec-c
Q 024871 173 ADVVYSDV-W 181 (261)
Q Consensus 173 aDviy~~~-w 181 (261)
||+|...+ |
T Consensus 387 ad~vvi~t~~ 396 (415)
T PRK11064 387 ADVLVMLVDH 396 (415)
T ss_pred CCEEEECCCC
Confidence 99988754 5
No 304
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=70.82 E-value=19 Score=32.41 Aligned_cols=70 Identities=16% Similarity=0.102 Sum_probs=50.4
Q ss_pred CCcEEeCCCCCCChhHHHHHHHHHHHH---hC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeC--------CCCC
Q 024871 75 TVPVINGLTDYNHPCQIMADALTIIEH---VG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCAC--------PKGF 142 (261)
Q Consensus 75 ~vPVINa~~~~~HPtQ~L~Dl~Ti~e~---~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~--------P~~~ 142 (261)
+.|+--+++...-|.-+.-=++.+++. ++ +++|+||++.|= +||....++.+...|.+++-++ |.|+
T Consensus 2 GKp~~~GGs~gR~~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGf-GnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gl 80 (254)
T cd05313 2 GKGLSWGGSLIRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGS-GNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGF 80 (254)
T ss_pred CCCCcCCCCCCCCchhHHHHHHHHHHHHHhcCCCcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCceEECCCCC
Confidence 456666666655555566556666543 33 589999999994 8899999998888999988443 6777
Q ss_pred CCC
Q 024871 143 EPD 145 (261)
Q Consensus 143 ~~~ 145 (261)
.++
T Consensus 81 d~~ 83 (254)
T cd05313 81 TGE 83 (254)
T ss_pred CHH
Confidence 654
No 305
>PRK06046 alanine dehydrogenase; Validated
Probab=70.81 E-value=24 Score=32.65 Aligned_cols=75 Identities=20% Similarity=0.296 Sum_probs=43.3
Q ss_pred hCCCCCcEEEEEcCCCchHHHHHHHHh-cCCcEEE-EeCCCCCCCCHHHHHHHHH-hCCCeEEEEcCHHHHhCCCCEEEE
Q 024871 102 VGRLEGTKVVYVGDGNNIVHSWLLMAS-VIPFHFV-CACPKGFEPDKETVEKARK-AGISKIEITNDPKEVVQGADVVYS 178 (261)
Q Consensus 102 ~g~l~~~~i~~vGd~~~v~~S~~~~~~-~~g~~~~-~~~P~~~~~~~~~~~~~~~-~g~~~i~~~~d~~~a~~~aDviy~ 178 (261)
+..-+-.+++++|- +..++..+..+. ..+++.+ ++.+.. .-.+.+.+..++ .| ..+..++|.+++++ +|+|++
T Consensus 124 La~~~~~~vgiiG~-G~qa~~h~~al~~~~~i~~v~v~~r~~-~~~~~~~~~~~~~~~-~~v~~~~~~~~~l~-aDiVv~ 199 (326)
T PRK06046 124 LARKDSKVVGIIGA-GNQARTQLLALSEVFDLEEVRVYDRTK-SSAEKFVERMSSVVG-CDVTVAEDIEEACD-CDILVT 199 (326)
T ss_pred hCCCCCCEEEEECC-cHHHHHHHHHHHhhCCceEEEEECCCH-HHHHHHHHHHHhhcC-ceEEEeCCHHHHhh-CCEEEE
Confidence 44445689999996 444555444433 3466444 444432 111222232222 24 35677889999997 999998
Q ss_pred ec
Q 024871 179 DV 180 (261)
Q Consensus 179 ~~ 180 (261)
-+
T Consensus 200 aT 201 (326)
T PRK06046 200 TT 201 (326)
T ss_pred ec
Confidence 75
No 306
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=70.79 E-value=44 Score=28.74 Aligned_cols=68 Identities=15% Similarity=-0.081 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHH-HhhhccEEEEeeCCcchHHHHhhhCCCcEEeCC
Q 024871 11 RTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARV-LCRYNDIIMARVFGHQDILDLAKFATVPVINGL 82 (261)
Q Consensus 11 RTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~-ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~ 82 (261)
.-.-+++.++..+|.++.....+.. .+...+..+. +++-+|.|++-..............++|||-.+
T Consensus 19 ~~~~~i~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~l~~~~ipvV~~~ 87 (268)
T cd06277 19 EIYRAIEEEAKKYGYNLILKFVSDE----DEEEFELPSFLEDGKVDGIILLGGISTEYIKEIKELGIPFVLVD 87 (268)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCC----hHHHHHHHHHHHHCCCCEEEEeCCCChHHHHHHhhcCCCEEEEc
Confidence 3355789999999998877644321 1223344443 355589888855433333333456789988754
No 307
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=70.73 E-value=33 Score=31.95 Aligned_cols=72 Identities=19% Similarity=0.203 Sum_probs=40.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhc--CCcEEEEeCCCCCCCCHHHHHHHHH--hCCCeEEEEc-CHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASV--IPFHFVCACPKGFEPDKETVEKARK--AGISKIEITN-DPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~--~g~~~~~~~P~~~~~~~~~~~~~~~--~g~~~i~~~~-d~~~a~~~aDviy~~~ 180 (261)
.||+++|. ++|..|++.++.. ++-+++++-=+.-.+.-..+|.... .-.....+.. .-.+.+++||+|....
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence 48999999 8898888777643 3436666542221222222222111 1012234443 2257899999988874
No 308
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=70.13 E-value=18 Score=31.27 Aligned_cols=71 Identities=21% Similarity=0.189 Sum_probs=43.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH-H---hCCC-eEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR-K---AGIS-KIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~-~---~g~~-~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+++|..+++..+++..+..-|.++++.....-.. +.+.+... . .|.. .+.. .+..++++++|+|+.-.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~-~~l~~~~~~~~~~~g~~~~~~~-~~~~ea~~~aDvVilav 76 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKA-EEAAAKALEELGHGGSDIKVTG-ADNAEAAKRADVVILAV 76 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHH-HHHHHHHHhhccccCCCceEEE-eChHHHHhcCCEEEEEC
Confidence 3799998668899999988888888887765432111 11111110 1 1210 1222 35678999999988763
No 309
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=70.06 E-value=33 Score=32.24 Aligned_cols=104 Identities=13% Similarity=0.155 Sum_probs=68.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCc
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASM 184 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~ 184 (261)
+.|+.++++| .+.|...-+.++.-||..+++. +..|- .-++.. -..++++ .++|+++.+|++.|++
T Consensus 212 ~aGKv~Vv~G-YGdVGKgCaqaLkg~g~~VivT---EiDPI----~ALQAa-MeG~~V~-tm~ea~~e~difVTtT---- 277 (434)
T KOG1370|consen 212 IAGKVAVVCG-YGDVGKGCAQALKGFGARVIVT---EIDPI----CALQAA-MEGYEVT-TLEEAIREVDIFVTTT---- 277 (434)
T ss_pred ecccEEEEec-cCccchhHHHHHhhcCcEEEEe---ccCch----HHHHHH-hhccEee-eHHHhhhcCCEEEEcc----
Confidence 5666666666 3557778888888899887654 22221 112221 1224544 6899999999999986
Q ss_pred chhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccCC
Q 024871 185 GQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAP 236 (261)
Q Consensus 185 ~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~ 236 (261)
|.+. .|+.+.|+..+.|+|+-.-+- -..||+-.-+..|
T Consensus 278 Gc~d------------ii~~~H~~~mk~d~IvCN~Gh--fd~EiDv~~L~~~ 315 (434)
T KOG1370|consen 278 GCKD------------IITGEHFDQMKNDAIVCNIGH--FDTEIDVKWLNTP 315 (434)
T ss_pred CCcc------------hhhHHHHHhCcCCcEEecccc--ccceeehhhccCC
Confidence 5422 377888888999999876655 4577777666654
No 310
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=69.79 E-value=27 Score=31.41 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=44.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH--------------HhCC----------CeEEEE
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR--------------KAGI----------SKIEIT 163 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~--------------~~g~----------~~i~~~ 163 (261)
+||+++|- +++..+++..++.-|.++++..+.. +.++.++ +.|. ..+..+
T Consensus 4 ~~I~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~-----~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~ 77 (291)
T PRK06035 4 KVIGVVGS-GVMGQGIAQVFARTGYDVTIVDVSE-----EILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS 77 (291)
T ss_pred cEEEEECc-cHHHHHHHHHHHhcCCeEEEEeCCH-----HHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee
Confidence 58999995 7788899888888898888775432 2222111 1121 134566
Q ss_pred cCHHHHhCCCCEEEEec
Q 024871 164 NDPKEVVQGADVVYSDV 180 (261)
Q Consensus 164 ~d~~~a~~~aDviy~~~ 180 (261)
+|. ++++++|+|+.-.
T Consensus 78 ~~~-~~~~~aDlVieav 93 (291)
T PRK06035 78 TSY-ESLSDADFIVEAV 93 (291)
T ss_pred CCH-HHhCCCCEEEEcC
Confidence 776 6899999999875
No 311
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=69.55 E-value=66 Score=26.90 Aligned_cols=67 Identities=18% Similarity=0.135 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHH-HHhhhccEEEEeeCCcchH--HHHhhhCCCcEEeCC
Q 024871 12 TRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAAR-VLCRYNDIIMARVFGHQDI--LDLAKFATVPVINGL 82 (261)
Q Consensus 12 TR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~-~ls~~~D~iv~R~~~~~~~--~~~a~~~~vPVINa~ 82 (261)
-+..++.++..+|.....++... ..++..+.++ .+++-+|++|+-....... ....+..++|||..+
T Consensus 17 ~~~g~~~~~~~~g~~l~~~~~~~----~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~~l~~~~ip~v~~~ 86 (264)
T cd01537 17 VLKGIEEAAKAAGYQVLLANSQN----DAEKQLSALENLIARGVDGIIIAPSDLTAPTIVKLARKAGIPVVLVD 86 (264)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCC----CHHHHHHHHHHHHHcCCCEEEEecCCCcchhHHHHhhhcCCCEEEec
Confidence 34677888899998887775532 1234455554 4445689999876554444 355567899998743
No 312
>PRK14030 glutamate dehydrogenase; Provisional
Probab=69.25 E-value=82 Score=30.81 Aligned_cols=55 Identities=20% Similarity=0.217 Sum_probs=41.2
Q ss_pred HHHHHHHHH---HHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEE--------eCCCCCCCCH
Q 024871 91 IMADALTII---EHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVC--------ACPKGFEPDK 146 (261)
Q Consensus 91 ~L~Dl~Ti~---e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~--------~~P~~~~~~~ 146 (261)
+.-=++.++ ++.| +++|+||++-| .+||....++.+..+|..++. ..|+|+.+++
T Consensus 208 g~Gv~~~~~~~~~~~g~~l~g~~vaIQG-fGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~ 274 (445)
T PRK14030 208 GFGALYFVHQMLETKGIDIKGKTVAISG-FGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEK 274 (445)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHH
Confidence 333344443 3445 59999999999 589999998888889999988 5688887643
No 313
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=68.60 E-value=13 Score=27.87 Aligned_cols=61 Identities=13% Similarity=0.100 Sum_probs=39.5
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe-cccCcc
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD-VWASMG 185 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~-~w~~~~ 185 (261)
+|++||...+-...+-..+..+|.++...++++-.- .-...++..+++||+|+.. .+.|+.
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~----------------~~~~~l~~~i~~aD~VIv~t~~vsH~ 62 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDE----------------KKASRLPSKIKKADLVIVFTDYVSHN 62 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCc----------------cchhHHHHhcCCCCEEEEEeCCcChH
Confidence 588999876677777788888998876664433110 0011257789999998764 355544
No 314
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=68.09 E-value=12 Score=34.66 Aligned_cols=72 Identities=26% Similarity=0.356 Sum_probs=49.2
Q ss_pred hCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHH----HHHHhCCCeEE-EEcCH-----HHHhC
Q 024871 102 VGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVE----KARKAGISKIE-ITNDP-----KEVVQ 171 (261)
Q Consensus 102 ~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~----~~~~~g~~~i~-~~~d~-----~~a~~ 171 (261)
.|+|+|+.|.++||. =.-|++.+++.++-.+.++- +++-+++ .+++.|..+++ +..|+ ++..+
T Consensus 148 RGDL~gK~I~vvGDD--DLtsia~aLt~mpk~iaVvD-----IDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~ 220 (354)
T COG1568 148 RGDLEGKEIFVVGDD--DLTSIALALTGMPKRIAVVD-----IDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKR 220 (354)
T ss_pred ccCcCCCeEEEEcCc--hhhHHHHHhcCCCceEEEEe-----chHHHHHHHHHHHHHhCccchhheeehhcccChHHHHh
Confidence 388999999999963 35678888888888877663 4554444 34556643333 34443 56677
Q ss_pred CCCEEEEec
Q 024871 172 GADVVYSDV 180 (261)
Q Consensus 172 ~aDviy~~~ 180 (261)
.-||++||+
T Consensus 221 kFDvfiTDP 229 (354)
T COG1568 221 KFDVFITDP 229 (354)
T ss_pred hCCeeecCc
Confidence 889999985
No 315
>PRK13529 malate dehydrogenase; Provisional
Probab=67.85 E-value=1.1e+02 Score=30.98 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=64.1
Q ss_pred CCcEEeCCCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCC---chHHHHHHHHhcCCc-------EEEEeCCCCCC
Q 024871 75 TVPVINGLTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGN---NIVHSWLLMASVIPF-------HFVCACPKGFE 143 (261)
Q Consensus 75 ~vPVINa~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~---~v~~S~~~~~~~~g~-------~~~~~~P~~~~ 143 (261)
++|++|=+ -..=-.-+|+=++.-.+..| .|+..||+++|-+. .++.-++......|+ +++++--+|+-
T Consensus 263 ~i~~FnDD-iQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl 341 (563)
T PRK13529 263 EICTFNDD-IQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLL 341 (563)
T ss_pred CCCeeccc-cchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeE
Confidence 79999932 11223456777776666665 59999999999863 356655555444565 67777665542
Q ss_pred ------CCHHHHHHHHHhCCCeE------EEEcCHHHHhCCC--CEEEEec
Q 024871 144 ------PDKETVEKARKAGISKI------EITNDPKEVVQGA--DVVYSDV 180 (261)
Q Consensus 144 ------~~~~~~~~~~~~g~~~i------~~~~d~~~a~~~a--Dviy~~~ 180 (261)
+.+....+++... .+ ....++.|+++++ ||++-.+
T Consensus 342 ~~~r~~l~~~k~~fa~~~~--~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S 390 (563)
T PRK13529 342 TDDMPDLLDFQKPYARKRE--ELADWDTEGDVISLLEVVRNVKPTVLIGVS 390 (563)
T ss_pred eCCCCcchHHHHHHhhhcc--cccccccccCCCCHHHHHhccCCCEEEEec
Confidence 2233333444321 11 1125899999999 9999875
No 316
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.84 E-value=27 Score=34.12 Aligned_cols=74 Identities=15% Similarity=0.084 Sum_probs=48.1
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC-CeEEEEcCHHHHhCCCCEEEEec
Q 024871 103 GRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI-SKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 103 g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~-~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
..+++++|.++| .+....|++..+...|.+++..-.+...+ ..+.+++.|. ..+..-+...+.+.++|+|+..+
T Consensus 3 ~~~~~~~i~v~G-~G~sG~s~a~~L~~~G~~v~~~D~~~~~~---~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp 77 (498)
T PRK02006 3 GDLQGPMVLVLG-LGESGLAMARWCARHGARLRVADTREAPP---NLAALRAELPDAEFVGGPFDPALLDGVDLVALSP 77 (498)
T ss_pred cccCCCEEEEEe-ecHhHHHHHHHHHHCCCEEEEEcCCCCch---hHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECC
Confidence 446789999999 56677889999999999988765543222 2223444431 23333323356788999988864
No 317
>PRK03094 hypothetical protein; Provisional
Probab=67.52 E-value=4 Score=30.35 Aligned_cols=32 Identities=9% Similarity=-0.214 Sum_probs=20.6
Q ss_pred hccEEEEeeCCcchHHHHhhhCCCcEEeCCCC
Q 024871 53 YNDIIMARVFGHQDILDLAKFATVPVINGLTD 84 (261)
Q Consensus 53 ~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~ 84 (261)
-+|++|+.......+-.=....++|||||.|-
T Consensus 35 ~~Da~VitG~d~n~mgi~d~~t~~pVI~A~G~ 66 (80)
T PRK03094 35 GCDCCVVTGQDSNVMGIADTSTKGSVITASGL 66 (80)
T ss_pred CcCEEEEeCCCcceecccccccCCcEEEcCCC
Confidence 37899998765543322223467999999763
No 318
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=67.49 E-value=46 Score=30.17 Aligned_cols=68 Identities=22% Similarity=0.224 Sum_probs=40.1
Q ss_pred EEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHH---HHHhC-CCeEEEEcCHHHHhCCCCEEEEe
Q 024871 110 VVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEK---ARKAG-ISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 110 i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~---~~~~g-~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
|+++|- ++|..+++..++..|. ++++.-...-......++. ....+ ..+++.+.| .+++++||+|+..
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d-~~~l~dADiVIit 73 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTND-YEDIAGSDVVVIT 73 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC-HHHhCCCCEEEEe
Confidence 578896 7788887777665554 8887765421111111111 11111 135665667 4579999999975
No 319
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=67.43 E-value=49 Score=32.42 Aligned_cols=76 Identities=13% Similarity=0.093 Sum_probs=46.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhc---CCc----EEEEeC-CCCCC-CCHHHHHHHHHh-C-CCeEEEEcCHHHHhCCC
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASV---IPF----HFVCAC-PKGFE-PDKETVEKARKA-G-ISKIEITNDPKEVVQGA 173 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~---~g~----~~~~~~-P~~~~-~~~~~~~~~~~~-g-~~~i~~~~d~~~a~~~a 173 (261)
.+-++|++.|-.++++.|++...+. ||. .+++.- |+... .....+|...-. . ...+.++.+..++++||
T Consensus 121 ~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~~~~ea~~da 200 (452)
T cd05295 121 INPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTTDLDVAFKDA 200 (452)
T ss_pred CCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEECCHHHhCCC
Confidence 3458999999999999999876543 663 344442 21211 222223322211 1 12466777889999999
Q ss_pred CEEEEec
Q 024871 174 DVVYSDV 180 (261)
Q Consensus 174 Dviy~~~ 180 (261)
|||+...
T Consensus 201 DvvIita 207 (452)
T cd05295 201 HVIVLLD 207 (452)
T ss_pred CEEEECC
Confidence 9988864
No 320
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=67.32 E-value=19 Score=29.29 Aligned_cols=71 Identities=24% Similarity=0.189 Sum_probs=47.5
Q ss_pred CcEEEEEcCCCchHHHHH-HHHhc----CCcEEEEeC---CCCCCCCHHHHHHHHHhCCCeEE-EEc-CH-HHHhCCCCE
Q 024871 107 GTKVVYVGDGNNIVHSWL-LMASV----IPFHFVCAC---PKGFEPDKETVEKARKAGISKIE-ITN-DP-KEVVQGADV 175 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~-~~~~~----~g~~~~~~~---P~~~~~~~~~~~~~~~~g~~~i~-~~~-d~-~~a~~~aDv 175 (261)
.+||.||- .+|+++|-+ ++..+ -++++.-++ .++-.+++..++.+++.|+. +. ... -+ ++-++++|+
T Consensus 2 ~~kVLFVC-~gN~cRSpmAE~l~~~~~~~~~~v~SAGt~~~~g~~~~~~a~~vl~e~Gid-~~~~~~k~i~~~~~~~~Dl 79 (139)
T COG0394 2 MMKVLFVC-TGNICRSPMAEALLRHLAPDNVEVDSAGTGGHPGEPPDPRAVEVLAEHGID-ISGHRSKQLTEEDFDEFDL 79 (139)
T ss_pred CceEEEEc-CCCcccCHHHHHHHHHhccCCeEEECCccCCCCCCCCCHHHHHHHHHcCCC-cCCccCccCchhhhhhCCE
Confidence 36899987 488888854 44332 357787777 46777888889989998842 21 111 11 334678999
Q ss_pred EEEe
Q 024871 176 VYSD 179 (261)
Q Consensus 176 iy~~ 179 (261)
|++-
T Consensus 80 Iitm 83 (139)
T COG0394 80 IITM 83 (139)
T ss_pred EEEe
Confidence 9996
No 321
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=67.19 E-value=5.6 Score=31.44 Aligned_cols=72 Identities=24% Similarity=0.180 Sum_probs=43.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhc-CCcEEEEeCC-CC-CCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASV-IPFHFVCACP-KG-FEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~-~g~~~~~~~P-~~-~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+++|-.+++.+.++..+.. -+++++.+.- +. -...+++-+.+... ...+.+++|++++++.+|||+=-+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~~~~~v~~~l~~~~~~~DVvIDfT 75 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-PLGVPVTDDLEELLEEADVVIDFT 75 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T-SSBEBS-HHHHTTH-SEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-CcccccchhHHHhcccCCEEEEcC
Confidence 4899999889999999888776 4677664432 11 11111221111111 123566899999999999986543
No 322
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=67.16 E-value=23 Score=33.80 Aligned_cols=138 Identities=15% Similarity=0.165 Sum_probs=86.2
Q ss_pred HHHHhhh--CCCcEEeC-CC-------CCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEE
Q 024871 67 ILDLAKF--ATVPVING-LT-------DYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFV 135 (261)
Q Consensus 67 ~~~~a~~--~~vPVINa-~~-------~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~ 135 (261)
+..+.+. ...|+||- ++ +.+=--|.+.|=. .+... -+.|++++.+|- +.+.+-.+..+.-+|+.+.
T Consensus 160 L~am~~~G~L~fPai~VNDs~tK~~FDNrYGtgqS~~DgI--~RaTn~liaGK~vVV~GY-G~vGrG~A~~~rg~GA~Vi 236 (420)
T COG0499 160 LRAMEKDGVLKFPAINVNDSVTKSLFDNRYGTGQSLLDGI--LRATNVLLAGKNVVVAGY-GWVGRGIAMRLRGMGARVI 236 (420)
T ss_pred HHHHHhcCCcccceEeecchhhhcccccccccchhHHHHH--HhhhceeecCceEEEecc-cccchHHHHHhhcCCCeEE
Confidence 3455543 47899995 32 2344568999853 33222 288999999884 4466666666778898876
Q ss_pred EeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcE
Q 024871 136 CACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAY 215 (261)
Q Consensus 136 ~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~ 215 (261)
+. +-.|-. -++.. -..+++. .+++|++.+|+++|.+ |.+ -.|+.+.|...|.++|
T Consensus 237 Vt---EvDPI~----AleA~-MdGf~V~-~m~~Aa~~gDifiT~T----Gnk------------dVi~~eh~~~MkDgaI 291 (420)
T COG0499 237 VT---EVDPIR----ALEAA-MDGFRVM-TMEEAAKTGDIFVTAT----GNK------------DVIRKEHFEKMKDGAI 291 (420)
T ss_pred EE---ecCchH----HHHHh-hcCcEEE-EhHHhhhcCCEEEEcc----CCc------------CccCHHHHHhccCCeE
Confidence 54 222211 11111 1124444 4799999999999986 642 2478888888888888
Q ss_pred EeeCCCCCCCccccccccc
Q 024871 216 FMHCLPAERGVEVTEGVIE 234 (261)
Q Consensus 216 ~mH~lP~~rg~Ev~~~v~~ 234 (261)
+-.-+=. ..||+-+-+.
T Consensus 292 l~N~GHF--d~EI~~~~L~ 308 (420)
T COG0499 292 LANAGHF--DVEIDVAGLE 308 (420)
T ss_pred Eeccccc--ceeccHHHHH
Confidence 8776653 4677665544
No 323
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=66.98 E-value=37 Score=30.56 Aligned_cols=66 Identities=14% Similarity=0.212 Sum_probs=44.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH-----------HhCC----------CeEEEEcCH
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR-----------KAGI----------SKIEITNDP 166 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~-----------~~g~----------~~i~~~~d~ 166 (261)
.||+++|- +++..+++..++.-|.++++..+. ++.++.+. +.|. .+++.++|+
T Consensus 5 ~kI~vIGa-G~mG~~iA~~la~~G~~V~l~d~~-----~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 78 (292)
T PRK07530 5 KKVGVIGA-GQMGNGIAHVCALAGYDVLLNDVS-----ADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDL 78 (292)
T ss_pred CEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCC-----HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCH
Confidence 68999995 778888888888888888877543 22222211 1121 236778887
Q ss_pred HHHhCCCCEEEEec
Q 024871 167 KEVVQGADVVYSDV 180 (261)
Q Consensus 167 ~~a~~~aDviy~~~ 180 (261)
+ ++++||+|+.-.
T Consensus 79 ~-~~~~aD~Vieav 91 (292)
T PRK07530 79 E-DLADCDLVIEAA 91 (292)
T ss_pred H-HhcCCCEEEEcC
Confidence 5 689999999875
No 324
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=66.94 E-value=1.3e+02 Score=29.33 Aligned_cols=165 Identities=14% Similarity=0.101 Sum_probs=86.6
Q ss_pred HHHHHHhcCCeEEEe-CC---------CCcCCC-CCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCC--
Q 024871 16 FETGFSLLGGHAIYL-GP---------DDIQMG-KREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGL-- 82 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l-~~---------~~s~~~-kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~-- 82 (261)
...=...+|.++..+ +. ..+.+. .|-|++|.-+.=++-+.+++-+.......+.+.+.-++|-+...
T Consensus 184 ik~lL~~~Gl~vn~l~d~~~~d~~~~~~~~~~~~g~ts~~~i~~~~~A~~nlv~~~~~g~~~A~~Lee~fGiPy~~~~~p 263 (457)
T TIGR02932 184 LKHYFSEMGVDANILMDTEDFDSPMLPDKSIFTHGRTTVEDIADSANAIATLALAKYEGGNTAEFLQETFDVPSILVPTP 263 (457)
T ss_pred HHHHHHHcCCCEEEEeccccccCCCCCCccccCCCCCCHHHHHhhhhCcEEEEEcccchHHHHHHHHHHHCCCeeccCCC
Confidence 334456889998765 32 222222 35788887776555567766665555667777777888876532
Q ss_pred ---CCCCChhHHHHHHHH-----------------HHH-HhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEe-CCC
Q 024871 83 ---TDYNHPCQIMADALT-----------------IIE-HVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCA-CPK 140 (261)
Q Consensus 83 ---~~~~HPtQ~L~Dl~T-----------------i~e-~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~-~P~ 140 (261)
.....=.+.|++++- |.+ ....+.|+|++++||. ..+.++...+.-+|+...++ +..
T Consensus 264 ~G~~~t~~~L~~la~~~g~~~~e~i~~er~~~~d~~~d~~~~~l~Gkrv~i~g~~-~~~~~l~~fl~Elg~~~~~~~~~~ 342 (457)
T TIGR02932 264 YGIKNTDAMLKNISELTGKPIPESLVRERGIALDALADLAHMFFANKKVAIFGHP-DLVIGLAEFCLEVELEPVLLLLGD 342 (457)
T ss_pred cChHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHhHHHHHcCCeeEEEcCH-HHHHHHHHHHHHCCCeEEEEEECC
Confidence 111111222233221 111 0012689999999984 45566665555567644322 222
Q ss_pred C--CCCCHHHHHHHHHh-C-CCeEEEEcCH---HHHhC---CCCEEEEecc
Q 024871 141 G--FEPDKETVEKARKA-G-ISKIEITNDP---KEVVQ---GADVVYSDVW 181 (261)
Q Consensus 141 ~--~~~~~~~~~~~~~~-g-~~~i~~~~d~---~~a~~---~aDviy~~~w 181 (261)
. ....++.++.+++. + ...+....|. ++.++ +.|+++...|
T Consensus 343 ~~~~~~~~~~~~~l~~~~~~~~~v~~~~d~~el~~~l~~~~~~dllig~s~ 393 (457)
T TIGR02932 343 DNSKYKKDPRIEELKNKANFDIEVVWNADLWELEKRIKAKLDIDLIMGHSK 393 (457)
T ss_pred CCccccchHHHHHHHhhcCCCceEEeCCCHHHHHHHHhhcCCCCEEEECCc
Confidence 1 11223344444332 2 1234334454 33332 5888888764
No 325
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=66.83 E-value=27 Score=30.80 Aligned_cols=64 Identities=22% Similarity=0.284 Sum_probs=43.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCC---cEEEEeCCCCCCCCHHHHHHHHHh-CCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIP---FHFVCACPKGFEPDKETVEKARKA-GISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g---~~~~~~~P~~~~~~~~~~~~~~~~-g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+++|- +++..+++..+..-| .++.++.+. ++..+.+++. | +....+.+++++++|+|+...
T Consensus 3 m~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~-----~~~~~~~~~~~g---~~~~~~~~~~~~~advVil~v 70 (267)
T PRK11880 3 KKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPS-----PEKRAALAEEYG---VRAATDNQEAAQEADVVVLAV 70 (267)
T ss_pred CEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCC-----HHHHHHHHHhcC---CeecCChHHHHhcCCEEEEEc
Confidence 58999995 788888887766555 456555543 2333334443 4 345778888899999988764
No 326
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=66.76 E-value=25 Score=31.94 Aligned_cols=62 Identities=11% Similarity=0.188 Sum_probs=42.5
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
||+||| .+++..+++..+..-|.++++.... + . .+.+.+.|. ...+++.++++++|+|++-.
T Consensus 2 ~Ig~IG-lG~MG~~ma~~L~~~G~~v~v~~~~---~--~-~~~~~~~g~---~~~~s~~~~~~~advVi~~v 63 (292)
T PRK15059 2 KLGFIG-LGIMGTPMAINLARAGHQLHVTTIG---P--V-ADELLSLGA---VSVETARQVTEASDIIFIMV 63 (292)
T ss_pred eEEEEc-cCHHHHHHHHHHHHCCCeEEEEeCC---H--h-HHHHHHcCC---eecCCHHHHHhcCCEEEEeC
Confidence 799999 4778888887777778777655331 1 1 122344552 34678899999999999853
No 327
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=66.32 E-value=69 Score=28.49 Aligned_cols=88 Identities=13% Similarity=0.143 Sum_probs=55.0
Q ss_pred ChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEc--
Q 024871 87 HPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITN-- 164 (261)
Q Consensus 87 HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~-- 164 (261)
-|...++-++.+.+.-+--.|.+|.+.|..+.+.+..+.++..+|.+++.++.. ++-.+.+++.|...+.-.+
T Consensus 124 ~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s-----~~~~~~l~~~Ga~~vi~~~~~ 198 (329)
T cd08294 124 LGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGS-----DDKVAWLKELGFDAVFNYKTV 198 (329)
T ss_pred cccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHcCCCEEEeCCCc
Confidence 344555555555444333567899999988889999999999999987765532 2344566777743332222
Q ss_pred CHHHHh-----CCCCEEEEe
Q 024871 165 DPKEVV-----QGADVVYSD 179 (261)
Q Consensus 165 d~~~a~-----~~aDviy~~ 179 (261)
+..+.+ ++.|+++-.
T Consensus 199 ~~~~~v~~~~~~gvd~vld~ 218 (329)
T cd08294 199 SLEEALKEAAPDGIDCYFDN 218 (329)
T ss_pred cHHHHHHHHCCCCcEEEEEC
Confidence 232222 357888754
No 328
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=66.22 E-value=50 Score=31.90 Aligned_cols=63 Identities=17% Similarity=0.096 Sum_probs=45.0
Q ss_pred CCcEEeCCCCCCChhHHHHHHHHH---HHHhCC-CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeC
Q 024871 75 TVPVINGLTDYNHPCQIMADALTI---IEHVGR-LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCAC 138 (261)
Q Consensus 75 ~vPVINa~~~~~HPtQ~L~Dl~Ti---~e~~g~-l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~ 138 (261)
+.|+-.+++..--|--+.-=.+.+ .+.+|. |+|+||++-| .+||..-.++.+...|.+++.++
T Consensus 171 GKp~~~GGS~~r~~aTg~Gv~~~~~~a~~~~g~~l~G~rVaVQG-~GNVg~~aa~~l~~~GAkvva~s 237 (411)
T COG0334 171 GKPLELGGSLGRSEATGYGVFYAIREALKALGDDLEGARVAVQG-FGNVGQYAAEKLHELGAKVVAVS 237 (411)
T ss_pred CCcccccCCCCCCcccceehHHHHHHHHHHcCCCcCCCEEEEEC-ccHHHHHHHHHHHHcCCEEEEEE
Confidence 456667665444444444444444 445565 9999999999 48999999998888899998776
No 329
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=66.06 E-value=35 Score=33.49 Aligned_cols=77 Identities=12% Similarity=0.105 Sum_probs=48.4
Q ss_pred CCCCcEEEEEcCC-----Cc----hHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH---------------hCC-C
Q 024871 104 RLEGTKVVYVGDG-----NN----IVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK---------------AGI-S 158 (261)
Q Consensus 104 ~l~~~~i~~vGd~-----~~----v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~---------------~g~-~ 158 (261)
.++|+||+++|=. .. -+..++..+...|.++.+.-|.- . .++..+...- .+. .
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQV-T-EEQIQRDLSMNKFDWDHPRHLQPMSPTAVK 398 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCC-C-hHHHHHHhhccccccccccccccccccccc
Confidence 5899999999931 22 34456777777899999888852 1 1111111100 000 1
Q ss_pred eEEEEcCHHHHhCCCCEEEEec-cc
Q 024871 159 KIEITNDPKEVVQGADVVYSDV-WA 182 (261)
Q Consensus 159 ~i~~~~d~~~a~~~aDviy~~~-w~ 182 (261)
.+++.+|+++++++||+|+..+ |.
T Consensus 399 ~~~~~~~~~~a~~~aD~vvi~t~~~ 423 (473)
T PLN02353 399 QVSVVWDAYEATKGAHGICILTEWD 423 (473)
T ss_pred ceeeeCCHHHHhcCCCEEEECCCCh
Confidence 3577888889999999988864 53
No 330
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=65.97 E-value=1.1e+02 Score=28.31 Aligned_cols=107 Identities=9% Similarity=0.147 Sum_probs=60.1
Q ss_pred CEeeccCCC---hhhHHHHHHHHHhcCCe-------EEEeCCCCcCCCCCCCHHHHHHHHhhh-c-cEEEEeeCCc----
Q 024871 1 MSMIFAKPS---MRTRVSFETGFSLLGGH-------AIYLGPDDIQMGKREETRDAARVLCRY-N-DIIMARVFGH---- 64 (261)
Q Consensus 1 l~~lF~~~S---tRTR~SFe~A~~~LGg~-------~~~l~~~~s~~~kgEs~~Dt~~~ls~~-~-D~iv~R~~~~---- 64 (261)
+|.||...| ...+.+|+.|+...-.. .+.+....+ ++.+--+.+..++.. - .+..+=.+..
T Consensus 2 iG~i~d~~s~~G~~~~~a~~lAv~~iN~~~~~~~~~~l~~~~~d~---~~d~~f~~~~~~~~~l~~gV~AIiGp~ss~~~ 78 (333)
T cd06394 2 IAAILDDPMECGRGERLALALARERINRAPERLGKARVEVDIFEL---LRDSQYETTDTMCQILPKGVVSVLGPSSSPAS 78 (333)
T ss_pred ceeeecCCccccHHHHHHHHHHHHHhccCccccCCceeEEEEeec---cccChHHHHHHHHHHHhcCeEEEECCCCchHH
Confidence 578999999 89999999999876533 222211111 233322333333333 2 3443333332
Q ss_pred -chHHHHhhhCCCcEEeCC-CC------------CCChh-----HHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 024871 65 -QDILDLAKFATVPVINGL-TD------------YNHPC-----QIMADALTIIEHVGRLEGTKVVYVGDG 116 (261)
Q Consensus 65 -~~~~~~a~~~~vPVINa~-~~------------~~HPt-----Q~L~Dl~Ti~e~~g~l~~~~i~~vGd~ 116 (261)
..+..+++...||+|-.. .. .-||. +|++|+.. ++ ++.+++++-+.
T Consensus 79 ~~~v~~i~~~~~VP~Is~~~~~~~~~~~~~~~~i~l~P~~~~~~~Ai~dli~---~~---~W~~v~~iYe~ 143 (333)
T cd06394 79 SSIVSHICGEKEIPHFKVGPEETPKLQYLRFASVNLHPSNEDISVAVAGILN---SF---NYPTASLICAK 143 (333)
T ss_pred HHHHHHHhhccCCceEEeccccCcccccccceEEEecCCHHHHHHHHHHHHH---hc---CCCEEEEEEeC
Confidence 245677888999999842 21 12444 56677753 33 46666666653
No 331
>PRK14031 glutamate dehydrogenase; Provisional
Probab=65.97 E-value=38 Score=33.05 Aligned_cols=124 Identities=13% Similarity=0.069 Sum_probs=72.2
Q ss_pred HHHHHHHHHh--cCCe--EEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeC--Cc-------ch---HHHHhhh---
Q 024871 13 RVSFETGFSL--LGGH--AIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF--GH-------QD---ILDLAKF--- 73 (261)
Q Consensus 13 R~SFe~A~~~--LGg~--~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~--~~-------~~---~~~~a~~--- 73 (261)
-++|-.|+.. +||. .+.++|.. ...+|-.+-+-+.+..+.+.|.-... .. .. ..++.+.
T Consensus 108 ~MT~K~Al~~lP~GGgKggi~~dP~~--~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~ 185 (444)
T PRK14031 108 EQTFKNSLTTLPMGGGKGGSDFSPRG--KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHE 185 (444)
T ss_pred HHHHHHHHcCCCCCCceeeeeCCCCC--CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCC
Confidence 3677777764 4553 46677764 23455555555565655554322221 11 11 1111111
Q ss_pred -----CCCcEEeCCCCCCChhHHHHHHHHHHH---HhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCC
Q 024871 74 -----ATVPVINGLTDYNHPCQIMADALTIIE---HVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACP 139 (261)
Q Consensus 74 -----~~vPVINa~~~~~HPtQ~L~Dl~Ti~e---~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P 139 (261)
++.|+--+++..--+--+.-=++.+++ +.| +++|+||++.|= +||....+..+..+|.+++.+++
T Consensus 186 ~~g~~tgkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~rVaVQGf-GNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 186 FTGTFTGKGREFGGSLIRPEATGYGNIYFLMEMLKTKGTDLKGKVCLVSGS-GNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred cceEECCCccccCCCCCCCcccHHHHHHHHHHHHHhcCCCcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEC
Confidence 123444444444444444444555544 344 599999999995 89999999888899999998776
No 332
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=65.88 E-value=22 Score=33.80 Aligned_cols=68 Identities=19% Similarity=0.265 Sum_probs=45.3
Q ss_pred hCCCCCcEEEEEcC-----CCc----hHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCC
Q 024871 102 VGRLEGTKVVYVGD-----GNN----IVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQG 172 (261)
Q Consensus 102 ~g~l~~~~i~~vGd-----~~~----v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~ 172 (261)
++.++|++|++.|= ... -+..++..+...|.++.+.-|.. ..... +..+ ..+++++++++
T Consensus 308 l~~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~--~~~~~----~~~~-----~~~~~~~~~~~ 376 (411)
T TIGR03026 308 LGPLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLV--PEEEV----KGLP-----LIDDLEEALKG 376 (411)
T ss_pred hhcccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCC--Chhhh----hhcc-----cCCCHHHHHhC
Confidence 45689999999993 122 34446677777899998888853 11111 1111 24688999999
Q ss_pred CCEEEEec
Q 024871 173 ADVVYSDV 180 (261)
Q Consensus 173 aDviy~~~ 180 (261)
+|+|+..+
T Consensus 377 ad~~v~~t 384 (411)
T TIGR03026 377 ADALVILT 384 (411)
T ss_pred CCEEEEec
Confidence 99988865
No 333
>PRK15076 alpha-galactosidase; Provisional
Probab=65.55 E-value=18 Score=35.07 Aligned_cols=73 Identities=22% Similarity=0.267 Sum_probs=40.6
Q ss_pred cEEEEEcCCC-chHHHHHHHH----hcCCcEEEEeCCCCCCCC--HHHHH-HHHHhC-CCeEEEEcCHHHHhCCCCEEEE
Q 024871 108 TKVVYVGDGN-NIVHSWLLMA----SVIPFHFVCACPKGFEPD--KETVE-KARKAG-ISKIEITNDPKEVVQGADVVYS 178 (261)
Q Consensus 108 ~~i~~vGd~~-~v~~S~~~~~----~~~g~~~~~~~P~~~~~~--~~~~~-~~~~~g-~~~i~~~~d~~~a~~~aDviy~ 178 (261)
.||++||.++ ....+++..+ ..-+.++++.-...-... ...++ .+...+ ..+++.+.|+++++++||+|+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 5899999754 2223332222 222457777754321110 11111 112233 1467778999999999999999
Q ss_pred ec
Q 024871 179 DV 180 (261)
Q Consensus 179 ~~ 180 (261)
.-
T Consensus 82 ti 83 (431)
T PRK15076 82 AI 83 (431)
T ss_pred ee
Confidence 75
No 334
>PRK11761 cysM cysteine synthase B; Provisional
Probab=65.54 E-value=40 Score=30.68 Aligned_cols=60 Identities=13% Similarity=0.287 Sum_probs=44.4
Q ss_pred HhCCC-CCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEc
Q 024871 101 HVGRL-EGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITN 164 (261)
Q Consensus 101 ~~g~l-~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~ 164 (261)
..|.+ .|.+|+-. -.+|...|++..++.+|++++++.|+.. ++..++.++.+| +.+..++
T Consensus 56 ~~g~~~~g~~vv~a-SsGN~g~alA~~a~~~G~~~~i~~p~~~--~~~k~~~~~~~G-A~v~~~~ 116 (296)
T PRK11761 56 KRGEIKPGDTLIEA-TSGNTGIALAMIAAIKGYRMKLIMPENM--SQERRAAMRAYG-AELILVP 116 (296)
T ss_pred HcCCCCCCCEEEEe-CCChHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHcC-CEEEEeC
Confidence 34543 44565443 3489999999999999999999999864 355667788888 5777766
No 335
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=65.44 E-value=28 Score=29.11 Aligned_cols=121 Identities=11% Similarity=0.130 Sum_probs=70.5
Q ss_pred cEEEEEcC--CCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH-HhC-CCeEEEEcCHHHHhCCCC----EEEEe
Q 024871 108 TKVVYVGD--GNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR-KAG-ISKIEITNDPKEVVQGAD----VVYSD 179 (261)
Q Consensus 108 ~~i~~vGd--~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~-~~g-~~~i~~~~d~~~a~~~aD----viy~~ 179 (261)
++|+..=+ +.||.+ .+.+|+.+|.+++++-|-||.+++..++.|- .+. ...+.+.+|.++.++..- ++..+
T Consensus 3 ~~IvL~~PeIP~NTGN-I~R~ca~tga~LhlI~PlGF~l~dk~lkRAGlDY~~~~~l~~h~s~e~fl~~~~~~~rl~~~t 81 (155)
T COG0219 3 LNIVLYQPEIPPNTGN-IIRTCAATGAELHLIEPLGFDLDDKRLKRAGLDYHEKASLTEHDSLEAFLEAEPIGGRLFALT 81 (155)
T ss_pred cEEEEECCCCCCchhH-HHHHHHhcCCeEEEEccCCCccchhhhhhcccchHhhcceEEeCCHHHHHhhccCCceEEEEE
Confidence 45666654 255554 5678889999999999999999886554321 110 245777888888875442 33332
Q ss_pred cccCcchhHHHH---HHHhhh----cCCcccHHHHHhcCCCcEEeeCCCCCCCccccccc
Q 024871 180 VWASMGQKEEAA---YRKQAF----QGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGV 232 (261)
Q Consensus 180 ~w~~~~~~~~~~---~~~~~~----~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v 232 (261)
+- ++..-.+ +.-.++ ..-++.+++|+.+...++-+.-.|-.|-.-++..|
T Consensus 82 t~---~~~~~~~~~f~~~d~llFG~Es~GLP~~i~~~~~~~~irIPm~~~~RSLNLsnsv 138 (155)
T COG0219 82 TK---GTTTYTDVSFQKGDYLLFGPESRGLPEEILDAAPDRCIRIPMRPGVRSLNLSNTV 138 (155)
T ss_pred ec---cccccccccCCCCCEEEECCCCCCCCHHHHHhCccceEEeccCCCCccchHHHHH
Confidence 21 1110000 000111 34678999999887765655444544655555544
No 336
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=65.40 E-value=48 Score=30.69 Aligned_cols=87 Identities=23% Similarity=0.261 Sum_probs=56.7
Q ss_pred CCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH----hCCC
Q 024871 83 TDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK----AGIS 158 (261)
Q Consensus 83 ~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~----~g~~ 158 (261)
|.+.|||-.|+ +..+|.+. .+|+++.=+|.++.+ |..+++++|..-+++ +.+++.-++.+++ +++.
T Consensus 142 GTG~HpTT~lc--L~~Le~~~-~~g~~vlDvGcGSGI---LaIAa~kLGA~~v~g----~DiDp~AV~aa~eNa~~N~v~ 211 (300)
T COG2264 142 GTGTHPTTSLC--LEALEKLL-KKGKTVLDVGCGSGI---LAIAAAKLGAKKVVG----VDIDPQAVEAARENARLNGVE 211 (300)
T ss_pred CCCCChhHHHH--HHHHHHhh-cCCCEEEEecCChhH---HHHHHHHcCCceEEE----ecCCHHHHHHHHHHHHHcCCc
Confidence 78999998886 44555554 489999999987665 467788899875544 4566666665554 3432
Q ss_pred ---eEEEEcCHHHHh-CCCCEEEEe
Q 024871 159 ---KIEITNDPKEVV-QGADVVYSD 179 (261)
Q Consensus 159 ---~i~~~~d~~~a~-~~aDviy~~ 179 (261)
.....+-++... +.+|+|...
T Consensus 212 ~~~~~~~~~~~~~~~~~~~DvIVAN 236 (300)
T COG2264 212 LLVQAKGFLLLEVPENGPFDVIVAN 236 (300)
T ss_pred hhhhcccccchhhcccCcccEEEeh
Confidence 122232233333 478999885
No 337
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=65.32 E-value=28 Score=27.75 Aligned_cols=71 Identities=20% Similarity=0.204 Sum_probs=42.6
Q ss_pred cEEEEEcCCCchHHHHH-HHHh-cC----CcEEEEeCC--C--CCCCCHHHHHHHHHhCCCeE--EEEcCH-HHHhCCCC
Q 024871 108 TKVVYVGDGNNIVHSWL-LMAS-VI----PFHFVCACP--K--GFEPDKETVEKARKAGISKI--EITNDP-KEVVQGAD 174 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~-~~~~-~~----g~~~~~~~P--~--~~~~~~~~~~~~~~~g~~~i--~~~~d~-~~a~~~aD 174 (261)
.||.||.- +|+++|-+ ++.. .+ ++.+.-++- . +-.+++..++.+++.|.. + .....+ ++.++++|
T Consensus 1 ~~iLfvc~-~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~~~g~~~~~~a~~~l~~~Gid-~s~h~s~~l~~~~~~~aD 78 (141)
T cd00115 1 KKVLFVCT-GNICRSPMAEAIFRHLAPKLDIEVDSAGTSGWHVGGRPDPRAIAVLAEHGID-ISGHRARQLTEDDFDEFD 78 (141)
T ss_pred CeEEEEec-ChhhhhHHHHHHHHHHhhhCCEEEECCCCCCccCCCCCCHHHHHHHHHcCCC-cccCeeeeCCHHHHHhCC
Confidence 37889885 67777743 3222 12 455555553 2 346788888888888742 1 111111 34678999
Q ss_pred EEEEec
Q 024871 175 VVYSDV 180 (261)
Q Consensus 175 viy~~~ 180 (261)
+|++-.
T Consensus 79 lIi~m~ 84 (141)
T cd00115 79 LIITMD 84 (141)
T ss_pred EEEEEC
Confidence 999963
No 338
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=65.00 E-value=23 Score=33.35 Aligned_cols=156 Identities=14% Similarity=0.083 Sum_probs=77.2
Q ss_pred HHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCC-c-chHHHHhhhCCCcEEe-CCCCC----CCh
Q 024871 16 FETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFG-H-QDILDLAKFATVPVIN-GLTDY----NHP 88 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~-~-~~~~~~a~~~~vPVIN-a~~~~----~HP 88 (261)
+..-...+|.++...- ..+.|++|..+.=+ +.+-++-++. . ...+.+.+.-++|.+. ..--+ .-=
T Consensus 163 l~~lL~~~Gi~v~~~~------~~~~t~~e~~~~~~--A~lniv~~~~~~~~~a~~L~e~~giP~~~~~~p~G~~~t~~~ 234 (398)
T PF00148_consen 163 LKRLLEELGIEVNAVF------PGGTTLEEIRKAPE--AALNIVLCPEGGPYAAEWLEERFGIPYLYFPSPYGIEGTDAW 234 (398)
T ss_dssp HHHHHHHTTEEEEEEE------ETTBCHHHHHHGGG--SSEEEESSCCHHHHHHHHHHHHHT-EEEEEC-SBSHHHHHHH
T ss_pred HHHHHHHCCCceEEEe------CCCCCHHHHHhCCc--CcEEEEeccchhhHHHHHHHHHhCCCeeeccccccHHHHHHH
Confidence 3344567777765542 23567777666433 3333333332 2 2556777777888877 21111 111
Q ss_pred hHHHHHHHHHH--------H----------HhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCH-HHH
Q 024871 89 CQIMADALTII--------E----------HVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDK-ETV 149 (261)
Q Consensus 89 tQ~L~Dl~Ti~--------e----------~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~-~~~ 149 (261)
-|.|++.+-.. + ....+.|+|+++.||. -.+-++...+.-+|+++..+........+ +.+
T Consensus 235 l~~i~~~lg~~~~~~~i~~~~~~~~~~l~~~~~~l~g~~v~i~~~~-~~~~~l~~~L~elG~~v~~v~~~~~~~~~~e~~ 313 (398)
T PF00148_consen 235 LRAIAEALGKPIAEAEIAEERERAEDALADYRERLGGKRVAIYGDP-DRALGLARFLEELGMEVVAVGCDDKSPEDEERL 313 (398)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEESSH-HHHHHHHHHHHHTT-EEEEEEESSGGHHHHHHH
T ss_pred HHHHHHHhCCchhhHHHHHHHHHHHHHHHhhHHhhcCceEEEEcCc-hhHHHHHHHHHHcCCeEEEEEEccCchhHHHHH
Confidence 23444433310 0 0123679999999995 45556777777899988777644332211 111
Q ss_pred HHHHHhCCCeEEEEcCHHH---HhCC--CCEEEEec
Q 024871 150 EKARKAGISKIEITNDPKE---VVQG--ADVVYSDV 180 (261)
Q Consensus 150 ~~~~~~g~~~i~~~~d~~~---a~~~--aDviy~~~ 180 (261)
....+.+...+....|.++ .+++ .|+++.+.
T Consensus 314 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~pdl~ig~~ 349 (398)
T PF00148_consen 314 RWLLEESDPEVIIDPDPEEIEELLEELKPDLLIGSS 349 (398)
T ss_dssp HHHHHTTCSEEEESCBHHHHHHHHHHHT-SEEEESH
T ss_pred HHHhhCCCcEEEeCCCHHHHHHHHHhcCCCEEEech
Confidence 1112222134544445433 3333 78887764
No 339
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.86 E-value=31 Score=33.36 Aligned_cols=74 Identities=12% Similarity=0.076 Sum_probs=47.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+++++|+++|- +.+..+.+..+...|.+++++-...........+.+++.|+ .+..-++.+ ...++|+|+...
T Consensus 13 ~~~~~~v~viG~-G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv-~~~~~~~~~-~~~~~D~Vv~s~ 86 (480)
T PRK01438 13 DWQGLRVVVAGL-GVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGA-TVRLGPGPT-LPEDTDLVVTSP 86 (480)
T ss_pred CcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCC-EEEECCCcc-ccCCCCEEEECC
Confidence 478899999995 56777788888888999887743322222333455666773 443333332 456789888764
No 340
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=64.38 E-value=21 Score=36.59 Aligned_cols=66 Identities=26% Similarity=0.196 Sum_probs=46.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCC--cEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIP--FHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g--~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+||+++| .+++..+++..+...| .+++...+. ++..+.+++.|. ......+.+++++++|+|+.-.
T Consensus 4 ~~I~IIG-~G~mG~ala~~l~~~G~~~~V~~~d~~-----~~~~~~a~~~g~-~~~~~~~~~~~~~~aDvVilav 71 (735)
T PRK14806 4 GRVVVIG-LGLIGGSFAKALRERGLAREVVAVDRR-----AKSLELAVSLGV-IDRGEEDLAEAVSGADVIVLAV 71 (735)
T ss_pred cEEEEEe-eCHHHHHHHHHHHhcCCCCEEEEEECC-----hhHHHHHHHCCC-CCcccCCHHHHhcCCCEEEECC
Confidence 6899999 4889999999888777 466666543 333455666663 2223567888999999998853
No 341
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=64.35 E-value=1.1e+02 Score=27.45 Aligned_cols=123 Identities=9% Similarity=0.104 Sum_probs=63.6
Q ss_pred CEeecc-CCChhhHHHHHHHHHhc-------CCeEEEeCCCCcCC-CCCCCHHHHHHHHhhhccEEEEeeC-Ccc---hH
Q 024871 1 MSMIFA-KPSMRTRVSFETGFSLL-------GGHAIYLGPDDIQM-GKREETRDAARVLCRYNDIIMARVF-GHQ---DI 67 (261)
Q Consensus 1 l~~lF~-~~StRTR~SFe~A~~~L-------Gg~~~~l~~~~s~~-~kgEs~~Dt~~~ls~~~D~iv~R~~-~~~---~~ 67 (261)
++.+|. +.+...+.+++.|+... +|..+.+....... ...+...-.-+.+++ ++.++=.+ ..+ ++
T Consensus 2 iG~i~~~~~g~~~~~a~~lAv~~iN~~ggil~g~~l~~~~~d~~~~~~~~a~~~~~~li~~--~V~aiiG~~~S~~~~av 79 (327)
T cd06382 2 IGAIFDDDDDSGEELAFRYAIDRINREKELLANTTLEYDIKRVKPDDSFETTKKVCDLLQQ--GVAAIFGPSSSEASSIV 79 (327)
T ss_pred eEEEecCCCchHHHHHHHHHHHHhcccccccCCceEEEEEEEecCCCcHHHHHHhhhhhhc--CcEEEECCCChhHHHHH
Confidence 467888 88899999999999873 34433332211110 111222222222333 33222222 222 34
Q ss_pred HHHhhhCCCcEEeC-CCCC----------CChh-----HHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCC
Q 024871 68 LDLAKFATVPVING-LTDY----------NHPC-----QIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIP 131 (261)
Q Consensus 68 ~~~a~~~~vPVINa-~~~~----------~HPt-----Q~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g 131 (261)
..+++..++|+|.. .+.. .-|+ ++++|++ +++ ..++++++.+...-..++...+...+
T Consensus 80 ~~~~~~~~vP~Is~~~~~~~~~~~~~~fr~~p~~~~~~~a~~~~~---~~~---~w~~vavl~~~~~~~~~l~~~~~~~~ 153 (327)
T cd06382 80 QSICDAKEIPHIQTRWDPEPKSNRQFTINLYPSNADLSRAYADIV---KSF---NWKSFTIIYESAEGLLRLQELLQAFG 153 (327)
T ss_pred HHHHhccCCCceeccCCcCccccccceEEeCCCHHHHHHHHHHHH---Hhc---CCcEEEEEecChHHHHHHHHHHHhhc
Confidence 67778889999983 2211 1122 2455543 333 46899999985544444444444444
No 342
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=63.39 E-value=17 Score=30.45 Aligned_cols=63 Identities=25% Similarity=0.325 Sum_probs=46.1
Q ss_pred CChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHh
Q 024871 86 NHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 86 ~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
.-|-=|-.=++||.+.+|+++|+++.=+|.+-.+.. .+++.++.+.++ |+.++++-++.+.++
T Consensus 28 T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs---~a~sm~~~e~vl----GfDIdpeALEIf~rN 90 (185)
T KOG3420|consen 28 TRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLS---IAFSMPKNESVL----GFDIDPEALEIFTRN 90 (185)
T ss_pred CcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhH---HHhhcCCCceEE----eeecCHHHHHHHhhc
Confidence 345566777999999999999999988887544433 566677776543 577888888776655
No 343
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=63.38 E-value=27 Score=33.32 Aligned_cols=65 Identities=14% Similarity=0.041 Sum_probs=46.1
Q ss_pred CCCcEEEEEcCC-----Cch----HHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCE
Q 024871 105 LEGTKVVYVGDG-----NNI----VHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADV 175 (261)
Q Consensus 105 l~~~~i~~vGd~-----~~v----~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDv 175 (261)
.+|++|++.|=. ..+ +..++..+..-|.++.+.-|.. . ... .. .+.+++|+++++++||+
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~-~-~~~------~~---~~~~~~~~~~~~~~~~~ 362 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVM-K-EDS------FF---NSRLERDLATFKQQADV 362 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCC-C-chh------hc---CCeeeCCHHHHHHhCCE
Confidence 478999999941 223 4446667777899998887741 1 111 11 46889999999999999
Q ss_pred EEEec
Q 024871 176 VYSDV 180 (261)
Q Consensus 176 iy~~~ 180 (261)
|+..+
T Consensus 363 ~~~~~ 367 (388)
T PRK15057 363 IISNR 367 (388)
T ss_pred EEEcC
Confidence 88876
No 344
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=62.99 E-value=1e+02 Score=27.79 Aligned_cols=88 Identities=15% Similarity=0.175 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhC-CCCCcEEEEEcCCC-c--hHHHHHHHHhcCCc-------EEEEeCCCCCC------CCHHHHHHHH
Q 024871 91 IMADALTIIEHVG-RLEGTKVVYVGDGN-N--IVHSWLLMASVIPF-------HFVCACPKGFE------PDKETVEKAR 153 (261)
Q Consensus 91 ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~-~--v~~S~~~~~~~~g~-------~~~~~~P~~~~------~~~~~~~~~~ 153 (261)
+|+=++.-.+..| +|+..||+++|-+. + +++=++.....-|. +++++--+|+- +.+.....+
T Consensus 8 ~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~- 86 (254)
T cd00762 8 AVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLA- 86 (254)
T ss_pred HHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHH-
Confidence 3555555555555 59999999999862 2 44444443322121 45655555532 122112211
Q ss_pred HhCCCeEEEEcCHHHHhC--CCCEEEEec
Q 024871 154 KAGISKIEITNDPKEVVQ--GADVVYSDV 180 (261)
Q Consensus 154 ~~g~~~i~~~~d~~~a~~--~aDviy~~~ 180 (261)
++- ..-....|+.|+++ ++||++-.+
T Consensus 87 ~~~-~~~~~~~~L~eav~~~kptvlIG~S 114 (254)
T cd00762 87 RFA-NPERESGDLEDAVEAAKPDFLIGVS 114 (254)
T ss_pred HHc-CcccccCCHHHHHHhhCCCEEEEeC
Confidence 121 11123469999999 999999875
No 345
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=62.92 E-value=24 Score=34.78 Aligned_cols=62 Identities=15% Similarity=0.146 Sum_probs=41.7
Q ss_pred CCCChhHHHHHHHHHHHHh--CCCCCcEEEEEcCCC----------------chHHHHHHHHhcCCcEEEEeC-CCCCCC
Q 024871 84 DYNHPCQIMADALTIIEHV--GRLEGTKVVYVGDGN----------------NIVHSWLLMASVIPFHFVCAC-PKGFEP 144 (261)
Q Consensus 84 ~~~HPtQ~L~Dl~Ti~e~~--g~l~~~~i~~vGd~~----------------~v~~S~~~~~~~~g~~~~~~~-P~~~~~ 144 (261)
...-|...+.-+..+.... .+|+|+||.+.+.++ .+..+++..+...|.+|++++ |-.+.+
T Consensus 231 rm~e~~~I~~~v~~~~~~~~~~~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~~ 310 (475)
T PRK13982 231 RMAEPLEIAAAAEALLRPPQPKPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLAD 310 (475)
T ss_pred CCCCHHHHHHHHHHHHhhccccccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCCC
Confidence 4456666655555544332 469999999877531 378889999999999988776 544443
Q ss_pred C
Q 024871 145 D 145 (261)
Q Consensus 145 ~ 145 (261)
+
T Consensus 311 p 311 (475)
T PRK13982 311 P 311 (475)
T ss_pred C
Confidence 3
No 346
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=62.84 E-value=78 Score=32.62 Aligned_cols=71 Identities=15% Similarity=0.077 Sum_probs=45.9
Q ss_pred cEEEEEcCCCchHHHHHHHHh-cCCcEEEEeCCCCCCCCH------HHHHHHHHhC----------CCeEEEEcCHHHHh
Q 024871 108 TKVVYVGDGNNIVHSWLLMAS-VIPFHFVCACPKGFEPDK------ETVEKARKAG----------ISKIEITNDPKEVV 170 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~-~~g~~~~~~~P~~~~~~~------~~~~~~~~~g----------~~~i~~~~d~~~a~ 170 (261)
+||++||- +-+.++++..++ .-|.+|++.-+..-.+.. ..++...+.| ...++.++|++ ++
T Consensus 305 ~~v~ViGa-G~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 382 (699)
T TIGR02440 305 KKVGILGG-GLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-GF 382 (699)
T ss_pred cEEEEECC-cHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-Hh
Confidence 57999996 778999988877 579888876654211110 0011111112 14678888874 79
Q ss_pred CCCCEEEEec
Q 024871 171 QGADVVYSDV 180 (261)
Q Consensus 171 ~~aDviy~~~ 180 (261)
++||+|+=-.
T Consensus 383 ~~adlViEav 392 (699)
T TIGR02440 383 KDVDIVIEAV 392 (699)
T ss_pred ccCCEEEEec
Confidence 9999998764
No 347
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=62.69 E-value=52 Score=31.22 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=28.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACP 139 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P 139 (261)
.+.|+|++++||. ..+.|++..+..+|++++.++.
T Consensus 273 ~l~Gkrv~i~g~~-~~~~~la~~L~elGm~vv~~~t 307 (396)
T cd01979 273 LLRGKSIFFMGDN-LLEIPLARFLTRCGMIVVEVGT 307 (396)
T ss_pred hhcCCEEEEECCc-hHHHHHHHHHHHCCCEEEeeCC
Confidence 4899999999984 4678888888889999887764
No 348
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=62.19 E-value=22 Score=29.27 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=27.9
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHhc-CCcEEEEeCC
Q 024871 103 GRLEGTKVVYVGDGNNIVHSWLLMASV-IPFHFVCACP 139 (261)
Q Consensus 103 g~l~~~~i~~vGd~~~v~~S~~~~~~~-~g~~~~~~~P 139 (261)
+.|+|+|+.++||...+.---++.|.+ .|.++++.+.
T Consensus 2 ~~l~gKkviiiGdRDGiPgpAie~c~k~~gaevvfs~T 39 (154)
T PRK13265 2 SLLEGKKVIIIGDRDGIPGPAIEECVKTTGAEVVFSST 39 (154)
T ss_pred CcccCcEEEEEecCCCCCcHHHHHHHhccCceEEEEee
Confidence 357999999999987777777777766 5777765543
No 349
>PRK14982 acyl-ACP reductase; Provisional
Probab=61.98 E-value=98 Score=29.12 Aligned_cols=74 Identities=19% Similarity=0.125 Sum_probs=47.5
Q ss_pred HHhC-CCCCcEEEEEcCCCchHHHHHHHHh-cCC-cEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEE
Q 024871 100 EHVG-RLEGTKVVYVGDGNNIVHSWLLMAS-VIP-FHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVV 176 (261)
Q Consensus 100 e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~-~~g-~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDvi 176 (261)
+.+| +++|++|+++|-.+.+...++..+. ..| .+++++..... ...+.+++.+.+.+ .++++++.++|+|
T Consensus 147 ~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~----rl~~La~el~~~~i---~~l~~~l~~aDiV 219 (340)
T PRK14982 147 PRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQE----RLQELQAELGGGKI---LSLEEALPEADIV 219 (340)
T ss_pred HHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHH----HHHHHHHHhccccH---HhHHHHHccCCEE
Confidence 3445 6999999999987777777776664 455 47777765321 11122233321222 3688999999999
Q ss_pred EEec
Q 024871 177 YSDV 180 (261)
Q Consensus 177 y~~~ 180 (261)
++-.
T Consensus 220 v~~t 223 (340)
T PRK14982 220 VWVA 223 (340)
T ss_pred EECC
Confidence 9876
No 350
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=61.98 E-value=36 Score=30.86 Aligned_cols=62 Identities=16% Similarity=0.061 Sum_probs=43.3
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCC---CCEEEEe
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQG---ADVVYSD 179 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~---aDviy~~ 179 (261)
||+++| .+++...++..+...|.++++..+ .++..+.+.+.| +...++++++++. +|+|.+-
T Consensus 2 ~Ig~IG-lG~MG~~mA~~L~~~g~~v~v~dr-----~~~~~~~~~~~g---~~~~~~~~e~~~~~~~~dvvi~~ 66 (301)
T PRK09599 2 QLGMIG-LGRMGGNMARRLLRGGHEVVGYDR-----NPEAVEALAEEG---ATGADSLEELVAKLPAPRVVWLM 66 (301)
T ss_pred EEEEEc-ccHHHHHHHHHHHHCCCeEEEEEC-----CHHHHHHHHHCC---CeecCCHHHHHhhcCCCCEEEEE
Confidence 799999 577888888777777888776544 334444455555 3457788888876 5887774
No 351
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=61.94 E-value=34 Score=30.83 Aligned_cols=69 Identities=9% Similarity=-0.010 Sum_probs=43.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhc--CCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASV--IPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~--~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+.+||+++|- +++....+..+.. .+++++.++-+. ++...+.+++.|. ...++|+++.++++|+|+...
T Consensus 5 ~~irIGIIG~-G~IG~~~a~~L~~~~~~~el~aV~dr~---~~~a~~~a~~~g~--~~~~~~~eell~~~D~Vvi~t 75 (271)
T PRK13302 5 PELRVAIAGL-GAIGKAIAQALDRGLPGLTLSAVAVRD---PQRHADFIWGLRR--PPPVVPLDQLATHADIVVEAA 75 (271)
T ss_pred CeeEEEEECc-cHHHHHHHHHHHhcCCCeEEEEEECCC---HHHHHHHHHhcCC--CcccCCHHHHhcCCCEEEECC
Confidence 4589999996 6666666655543 467776443221 1122223444442 234678999999999999875
No 352
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=61.81 E-value=18 Score=31.03 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=45.5
Q ss_pred EEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEE----EcCHHHHhCCCCEEEEecc
Q 024871 110 VVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEI----TNDPKEVVQGADVVYSDVW 181 (261)
Q Consensus 110 i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~----~~d~~~a~~~aDviy~~~w 181 (261)
|+++|-.+++..+.+..+..-+.++...+=+. +.+..+.++..|...++. .+++.++++++|+|+....
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~---~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~ 73 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDP---SSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTP 73 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSS---HHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEecc---chhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecC
Confidence 67889878888888877766777777654222 444555666677422211 2335678999999998764
No 353
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=61.79 E-value=58 Score=30.88 Aligned_cols=75 Identities=17% Similarity=0.100 Sum_probs=42.6
Q ss_pred CCCcEEEEEcCCC-chHHHHHHHHhc-----CCcEEEEeCCCCCCCCHHHHHHHHHhC-----------CCeEEEEcCHH
Q 024871 105 LEGTKVVYVGDGN-NIVHSWLLMASV-----IPFHFVCACPKGFEPDKETVEKARKAG-----------ISKIEITNDPK 167 (261)
Q Consensus 105 l~~~~i~~vGd~~-~v~~S~~~~~~~-----~g~~~~~~~P~~~~~~~~~~~~~~~~g-----------~~~i~~~~d~~ 167 (261)
.+..||+++|-++ .++-+...+-.. |+-++.+-+-++-.-.....+..++.+ ..++..++|++
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ 88 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLK 88 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHH
Confidence 3457999999753 244444333222 445666554332211122333333211 13577899999
Q ss_pred HHhCCCCEEEEe
Q 024871 168 EVVQGADVVYSD 179 (261)
Q Consensus 168 ~a~~~aDviy~~ 179 (261)
+++++||+|+.-
T Consensus 89 eav~~aDiIvlA 100 (365)
T PTZ00345 89 EAVEDADLLIFV 100 (365)
T ss_pred HHHhcCCEEEEE
Confidence 999999988875
No 354
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=61.38 E-value=40 Score=33.02 Aligned_cols=96 Identities=19% Similarity=0.237 Sum_probs=59.1
Q ss_pred CCCChhHHHHHHHHHHHHhCC--CCCcEEEEEcCC--Cc-hHHHH-HHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC
Q 024871 84 DYNHPCQIMADALTIIEHVGR--LEGTKVVYVGDG--NN-IVHSW-LLMASVIPFHFVCACPKGFEPDKETVEKARKAGI 157 (261)
Q Consensus 84 ~~~HPtQ~L~Dl~Ti~e~~g~--l~~~~i~~vGd~--~~-v~~S~-~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~ 157 (261)
+..||..-|-|+.-..+.... -++.+|.++||. .. +.-++ ...+..+|+++.+..|+.+...-..+++....+.
T Consensus 11 ~~~~~~~~l~~~~~a~~~i~~ai~~~~~I~I~~d~DaDGitS~ail~~~L~~~g~~~~~~ip~~~~~~~g~~~~~~~~~~ 90 (491)
T COG0608 11 SLLLDPFLLKDMEKAAARIAEAIEKGEKILIYGDYDADGITSAAILAKALRRLGADVDYYIPNRFEEGYGAIRKLKEEGA 90 (491)
T ss_pred hcCCChHHHhhHHHHHHHHHHHHHcCCEEEEEEecCcccHHHHHHHHHHHHHcCCceEEEeCCCccccchHHHHHHhcCC
Confidence 456788888888777666543 568999999984 33 44443 4567789998888899877653212233344442
Q ss_pred CeEEEEcCH-----HHHh----CCCCEEEEec
Q 024871 158 SKIEITNDP-----KEVV----QGADVVYSDV 180 (261)
Q Consensus 158 ~~i~~~~d~-----~~a~----~~aDviy~~~ 180 (261)
...++-|. ++.- .+.|||++|-
T Consensus 91 -~liItvD~G~~~~~~i~~~~~~g~~vIVtDH 121 (491)
T COG0608 91 -DLIITVDNGSGSLEEIARAKELGIDVIVTDH 121 (491)
T ss_pred -CEEEEECCCcccHHHHHHHHhCCCcEEEECC
Confidence 33333332 2211 2578888885
No 355
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=61.30 E-value=48 Score=32.01 Aligned_cols=63 Identities=14% Similarity=0.117 Sum_probs=48.4
Q ss_pred HHHHHHHhC---CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC
Q 024871 95 ALTIIEHVG---RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI 157 (261)
Q Consensus 95 l~Ti~e~~g---~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~ 157 (261)
|..++++|. .|+|.||+.+--...-.--+++.+...|.++.+++.+-+...+++...+.+.|+
T Consensus 21 l~~~~~~~~~~~p~~g~~i~~~~hl~~~ta~l~~~L~~~GA~v~~~~~np~stqd~vaa~l~~~gi 86 (413)
T cd00401 21 LMAIREEYGASKPLKGARIAGCLHMTVQTAVLIETLVALGAEVRWSSCNIFSTQDHAAAAIAAAGI 86 (413)
T ss_pred HHHHHHHhhccCCCCCCEEEEEEcchHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhcCc
Confidence 556677774 499999999877644444577778888999999988778888888877777774
No 356
>PRK10126 tyrosine phosphatase; Provisional
Probab=61.22 E-value=46 Score=26.95 Aligned_cols=70 Identities=16% Similarity=0.142 Sum_probs=44.5
Q ss_pred cEEEEEcCCCchHHHHH-HHH-hcC--CcEEEEeCC---CCCCCCHHHHHHHHHhCCCeEE--EEcCH-HHHhCCCCEEE
Q 024871 108 TKVVYVGDGNNIVHSWL-LMA-SVI--PFHFVCACP---KGFEPDKETVEKARKAGISKIE--ITNDP-KEVVQGADVVY 177 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~-~~~-~~~--g~~~~~~~P---~~~~~~~~~~~~~~~~g~~~i~--~~~d~-~~a~~~aDviy 177 (261)
.||.||.- +|+++|-+ ++. ..+ ++++.-++- .+-.+++..++.+++.|.. +. ....+ ++-++++|.|+
T Consensus 3 ~~iLFVC~-gN~cRSpmAEa~~~~~~~~~~v~SAG~~~~~g~~~~~~a~~~l~~~Gid-~~~h~sr~lt~~~~~~~DlIl 80 (147)
T PRK10126 3 NNILVVCV-GNICRSPTAERLLQRYHPELKVESAGLGALVGKGADPTAISVAAEHQLS-LEGHCARQISRRLCRNYDLIL 80 (147)
T ss_pred CeEEEEcC-CcHhHHHHHHHHHHHhcCCeEEEeeeccCCCCCCCCHHHHHHHHHcCCC-cCCCccccCCHHHhccCCEEE
Confidence 58999984 88999964 432 222 245554543 3456788888888888852 11 12112 45688999999
Q ss_pred Ee
Q 024871 178 SD 179 (261)
Q Consensus 178 ~~ 179 (261)
+-
T Consensus 81 ~M 82 (147)
T PRK10126 81 TM 82 (147)
T ss_pred EC
Confidence 84
No 357
>PRK13530 arsenate reductase; Provisional
Probab=61.05 E-value=50 Score=26.37 Aligned_cols=72 Identities=13% Similarity=0.206 Sum_probs=44.0
Q ss_pred CcEEEEEcCCCchHHHHH-HHHh--cC--CcEEEEeCCCCCCCCHHHHHHHHHhCCCeEE--EEcCH-HHHhCCCCEEEE
Q 024871 107 GTKVVYVGDGNNIVHSWL-LMAS--VI--PFHFVCACPKGFEPDKETVEKARKAGISKIE--ITNDP-KEVVQGADVVYS 178 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~-~~~~--~~--g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~--~~~d~-~~a~~~aDviy~ 178 (261)
.+||.||.- +|+++|-+ ++.. .. ++++.-++-....+++..++.+++.|+. +. ....+ ++.+.++|+|++
T Consensus 3 ~~~vLFvC~-~N~cRS~mAEal~~~~~~~~~~v~SAG~~~~~~~~~a~~~l~e~Gi~-~~~~~s~~l~~~~~~~~D~ii~ 80 (133)
T PRK13530 3 KKTIYFLCT-GNSCRSQMAEGWGKQYLGDKWNVYSAGIEAHGVNPNAIKAMKEVGID-ISNQTSDIIDNDILNNADLVVT 80 (133)
T ss_pred CCEEEEEcC-CchhHHHHHHHHHHHhcCCCEEEECCCCCCCCCCHHHHHHHHHcCCC-cCCCccccCChhHhccCCEEEE
Confidence 468999984 78888854 3322 22 3444544433345778888888888852 21 11222 245788999998
Q ss_pred ec
Q 024871 179 DV 180 (261)
Q Consensus 179 ~~ 180 (261)
-.
T Consensus 81 m~ 82 (133)
T PRK13530 81 LC 82 (133)
T ss_pred ec
Confidence 74
No 358
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=60.84 E-value=45 Score=32.99 Aligned_cols=66 Identities=9% Similarity=0.132 Sum_probs=45.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHH-----------HHHhCC----------CeEEEEcCH
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEK-----------ARKAGI----------SKIEITNDP 166 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~-----------~~~~g~----------~~i~~~~d~ 166 (261)
++|++||- +.+...++..++.-|.++++.-+. ++.++. ..+.|. +.+..+.|+
T Consensus 8 ~~V~VIGa-G~MG~gIA~~la~aG~~V~l~D~~-----~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~ 81 (507)
T PRK08268 8 ATVAVIGA-GAMGAGIAQVAAQAGHTVLLYDAR-----AGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEAL 81 (507)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEeCC-----HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH
Confidence 67999995 778888888887889888866432 222222 223331 237778888
Q ss_pred HHHhCCCCEEEEec
Q 024871 167 KEVVQGADVVYSDV 180 (261)
Q Consensus 167 ~~a~~~aDviy~~~ 180 (261)
++ +++||+|+.-.
T Consensus 82 ~~-~~~aDlViEav 94 (507)
T PRK08268 82 AD-LADCDLVVEAI 94 (507)
T ss_pred HH-hCCCCEEEEcC
Confidence 65 77999999865
No 359
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a
Probab=60.79 E-value=40 Score=32.10 Aligned_cols=130 Identities=12% Similarity=0.108 Sum_probs=70.0
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCC--CcCCCC---CCCHHHHHHHHhhhc-cEEEEeeCCc----chHHHH
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPD--DIQMGK---REETRDAARVLCRYN-DIIMARVFGH----QDILDL 70 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~--~s~~~k---gEs~~Dt~~~ls~~~-D~iv~R~~~~----~~~~~~ 70 (261)
++.+|...|..-+.+|+.|+.+.-...-.+..- ...+.. ..+..=+-...+.+. ++..+=.+.. ..+..+
T Consensus 2 IGaif~~~s~~~~~Af~~Ai~~iN~~~~~l~~~~l~~~~~~~d~~d~f~a~~~~c~l~~~gv~ai~Gp~~~~~~~~v~~~ 81 (400)
T cd06391 2 IGAIFDESAKKDDEVFRMAVADLNQNNEILQTEKITVSVTFVDGNNPFQAVQEACELMNQGILALVSSIGCTSAGSLQSL 81 (400)
T ss_pred cceeeccCCchHHHHHHHHHHHhcCCccccCCCcceEEEEEeeCCCcHHHHHHHHHHHhCCeEEEECCCcchHHHHHHHH
Confidence 578999999999999999999877544222211 111111 222222222222221 3333333321 234678
Q ss_pred hhhCCCcEEe-----CC----------CC-------CCChh----HHHHHHHHHHHHhCCCCCcEEEEEcCCC---chHH
Q 024871 71 AKFATVPVIN-----GL----------TD-------YNHPC----QIMADALTIIEHVGRLEGTKVVYVGDGN---NIVH 121 (261)
Q Consensus 71 a~~~~vPVIN-----a~----------~~-------~~HPt----Q~L~Dl~Ti~e~~g~l~~~~i~~vGd~~---~v~~ 121 (261)
+....+|.|- +. .+ .-+|. .+++|+ .++| ++.+++++-|.. +.+.
T Consensus 82 ~~~~~vP~i~~~~~~~~t~~~~~~~~~~~~~~~y~~~~rp~~~~~~ai~~l---i~~f---~W~~v~i~~d~~~~~~~l~ 155 (400)
T cd06391 82 ADAMHIPHLFIQRSTAGTPRSSCGLTRSNRNDDYTLSVRPPVYLNDVILRV---VTEY---AWQKFIIFYDTDYDIRGIQ 155 (400)
T ss_pred hccCcCCeEEeecccccCccccCCCCCCCCcccceEEecChHHHHHHHHHH---HHHc---CCcEEEEEEeCCccHHHHH
Confidence 8889999885 22 11 13565 344444 3444 355566666532 3555
Q ss_pred HHHHHHhcCCcEEEE
Q 024871 122 SWLLMASVIPFHFVC 136 (261)
Q Consensus 122 S~~~~~~~~g~~~~~ 136 (261)
.+...+...|..+.+
T Consensus 156 ~l~~~~~~~~i~I~~ 170 (400)
T cd06391 156 EFLDKVSQQGMDVAL 170 (400)
T ss_pred HHHHHHHHcCCeEEE
Confidence 666667777776654
No 360
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=60.55 E-value=28 Score=31.49 Aligned_cols=164 Identities=12% Similarity=0.014 Sum_probs=81.8
Q ss_pred ChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHH-------HHhhhCCC--cEE
Q 024871 9 SMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDIL-------DLAKFATV--PVI 79 (261)
Q Consensus 9 StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~-------~~a~~~~v--PVI 79 (261)
..+.-.=+..++..+|....+..-.. ...|.+.+..+.+..-...+-+=.+--..+. +.|+..+. -|+
T Consensus 17 hS~SP~ihn~~f~~~gl~~~y~~~~~---~~~~~l~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~~A~~iGAVNTv~ 93 (282)
T TIGR01809 17 HSRSPHLHNAGYEILGLPDKTYEFET---CSAEELKEVLSGFGPQFGGASVTIPLKFAILRFADEHTDRASLIGSVNTLL 93 (282)
T ss_pred hccCHHHHHHHHHHcCCCcEEEeeec---CCHHHHHHHHHhcCCCCcEEEECCCCHHHHHHHhhcCCHHHHHhCceeEEE
Confidence 44445556778889998766653321 1124555555544221233333333222222 22222111 133
Q ss_pred e-CCC-CCCChhHHHHHHHHHHHHh--CCCCCcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHH
Q 024871 80 N-GLT-DYNHPCQIMADALTIIEHV--GRLEGTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARK 154 (261)
Q Consensus 80 N-a~~-~~~HPtQ~L~Dl~Ti~e~~--g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~ 154 (261)
+ -++ -..|=|-...=+.++++.. +.++|++++++|- +.++++.+..+...|. +++++.- ..+-.+.+ +++
T Consensus 94 ~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nR-t~~ka~~L---a~~ 168 (282)
T TIGR01809 94 RTQNGIWKGDNTDWDGIAGALANIGKFEPLAGFRGLVIGA-GGTSRAAVYALASLGVTDITVINR-NPDKLSRL---VDL 168 (282)
T ss_pred EcCCCcEEEecCCHHHHHHHHHhhCCccccCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeC-CHHHHHHH---HHH
Confidence 3 222 2234343333333444432 2578999999996 6688888888888886 5766642 22111222 222
Q ss_pred hCC-CeEEEE---cCHHHHhCCCCEEEEec
Q 024871 155 AGI-SKIEIT---NDPKEVVQGADVVYSDV 180 (261)
Q Consensus 155 ~g~-~~i~~~---~d~~~a~~~aDviy~~~ 180 (261)
.+. ..+... +++.+.+.++|+|+..+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~DiVInaT 198 (282)
T TIGR01809 169 GVQVGVITRLEGDSGGLAIEKAAEVLVSTV 198 (282)
T ss_pred hhhcCcceeccchhhhhhcccCCCEEEECC
Confidence 220 112211 33446678999999875
No 361
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=60.53 E-value=1.1e+02 Score=26.16 Aligned_cols=69 Identities=10% Similarity=-0.003 Sum_probs=42.2
Q ss_pred hhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHH-hhhccEEEEeeCC-cchHHHHhhhCCCcEEeCC
Q 024871 10 MRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVL-CRYNDIIMARVFG-HQDILDLAKFATVPVINGL 82 (261)
Q Consensus 10 tRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~l-s~~~D~iv~R~~~-~~~~~~~a~~~~vPVINa~ 82 (261)
.+-+..++.+++.+|.+++....... .|...+.++.+ ++-+|.|++-... .....+.++..++|||.-+
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~----~~~~~~~i~~l~~~~~dgiii~~~~~~~~~~~~~~~~~ipvV~i~ 85 (270)
T cd06296 15 SEVLRGVEEAAAAAGYDVVLSESGRR----TSPERQWVERLSARRTDGVILVTPELTSAQRAALRRTGIPFVVVD 85 (270)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCc----hHHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHhcCCCCEEEEe
Confidence 34456788899999999887755422 24444555544 4458987765432 2233344456789987743
No 362
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=59.50 E-value=91 Score=32.25 Aligned_cols=74 Identities=14% Similarity=0.064 Sum_probs=47.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCH------HHHHHHHHhC----------CCeEEEEcCHHHHhC
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDK------ETVEKARKAG----------ISKIEITNDPKEVVQ 171 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~------~~~~~~~~~g----------~~~i~~~~d~~~a~~ 171 (261)
++|++||- +-+...++..++.-|++|++.-+..-.... ..++...+.| ...++.+.|+ ++++
T Consensus 314 ~~v~ViGa-G~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 391 (714)
T TIGR02437 314 KQAAVLGA-GIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFD 391 (714)
T ss_pred ceEEEECC-chHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhc
Confidence 47999995 668888888888889988877654211110 1111111122 1367788887 5689
Q ss_pred CCCEEEEecccC
Q 024871 172 GADVVYSDVWAS 183 (261)
Q Consensus 172 ~aDviy~~~w~~ 183 (261)
+||+|+=-..+.
T Consensus 392 ~aDlViEav~E~ 403 (714)
T TIGR02437 392 NVDIVVEAVVEN 403 (714)
T ss_pred CCCEEEEcCccc
Confidence 999999875433
No 363
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=59.48 E-value=68 Score=30.94 Aligned_cols=63 Identities=13% Similarity=0.079 Sum_probs=46.6
Q ss_pred HHHHHHHhC---CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC
Q 024871 95 ALTIIEHVG---RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI 157 (261)
Q Consensus 95 l~Ti~e~~g---~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~ 157 (261)
|..++++|. .|+|.||+.+--...-.--+++.+...|.++.+++-+-+...+++...+.+.|+
T Consensus 17 l~~~~~~~~~~~pl~G~~i~~~~hl~~~Ta~l~~~L~~~GA~v~~~~~np~stqd~vaaaL~~~gi 82 (406)
T TIGR00936 17 LMRIRERFSEEKPLKGARIAACLHVTVETAVLIETLVAGGAEVAWTSCNPLSTQDDVAAALAKAGI 82 (406)
T ss_pred HHHHHHHHhccCCCCCCEEEEEEechHHHHHHHHHHHHcCCEEEEEccCCccccHHHHHHHHhCCc
Confidence 566777774 599999999887543333467777788999988876557788888777777774
No 364
>PLN02565 cysteine synthase
Probab=59.38 E-value=51 Score=30.46 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=51.6
Q ss_pred CCChhHHHHHH-----HHHHHHhCCC-CCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCC
Q 024871 85 YNHPCQIMADA-----LTIIEHVGRL-EGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGIS 158 (261)
Q Consensus 85 ~~HPtQ~L~Dl-----~Ti~e~~g~l-~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~ 158 (261)
..+||-++=|= +.-.++.|.+ .|.+..+.--.+|...|++..++.+|..++++.|++ .++..++.++.+| +
T Consensus 38 ~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~--~~~~k~~~i~~~G-A 114 (322)
T PLN02565 38 MMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPAS--MSLERRIILLAFG-A 114 (322)
T ss_pred ccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCC--CcHHHHHHHHHcC-C
Confidence 45777766552 2222333543 453422223348999999999999999999999987 5555667788898 5
Q ss_pred eEEEEc
Q 024871 159 KIEITN 164 (261)
Q Consensus 159 ~i~~~~ 164 (261)
++..++
T Consensus 115 ~V~~~~ 120 (322)
T PLN02565 115 ELVLTD 120 (322)
T ss_pred EEEEeC
Confidence 777665
No 365
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=59.34 E-value=39 Score=34.81 Aligned_cols=71 Identities=18% Similarity=0.090 Sum_probs=46.4
Q ss_pred cEEEEEcCCCchHHHHHHHHh-cCCcEEEEeCCCCCCCCH------HHHHHHHHhC----------CCeEEEEcCHHHHh
Q 024871 108 TKVVYVGDGNNIVHSWLLMAS-VIPFHFVCACPKGFEPDK------ETVEKARKAG----------ISKIEITNDPKEVV 170 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~-~~g~~~~~~~P~~~~~~~------~~~~~~~~~g----------~~~i~~~~d~~~a~ 170 (261)
+||++||- +.+.++++..++ ..|.+|++.-+..-.+.. +.++++.+.| ...++.+.|+ +++
T Consensus 310 ~~v~ViGa-G~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 387 (708)
T PRK11154 310 NKVGVLGG-GLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGF 387 (708)
T ss_pred cEEEEECC-chhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHh
Confidence 67999996 778889988877 779998886653211110 1111111222 1468888887 578
Q ss_pred CCCCEEEEec
Q 024871 171 QGADVVYSDV 180 (261)
Q Consensus 171 ~~aDviy~~~ 180 (261)
++||+|+=-.
T Consensus 388 ~~aDlViEav 397 (708)
T PRK11154 388 KHADVVIEAV 397 (708)
T ss_pred ccCCEEeecc
Confidence 9999998764
No 366
>PRK10717 cysteine synthase A; Provisional
Probab=59.25 E-value=59 Score=29.93 Aligned_cols=60 Identities=22% Similarity=0.305 Sum_probs=43.0
Q ss_pred hCCCC-CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcC
Q 024871 102 VGRLE-GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITND 165 (261)
Q Consensus 102 ~g~l~-~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d 165 (261)
.|.++ |.+|+ ..-.+|...|++..++.+|++.+++.|.+. ++..++.++.+| +.+.....
T Consensus 58 ~g~~~~g~~vv-~aSsGN~g~alA~~a~~~G~~~~vv~p~~~--~~~k~~~~~~~G-A~V~~~~~ 118 (330)
T PRK10717 58 RGLLKPGGTIV-EGTAGNTGIGLALVAAARGYKTVIVMPETQ--SQEKKDLLRALG-AELVLVPA 118 (330)
T ss_pred cCCCCCCCEEE-EeCCcHHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHcC-CEEEEeCC
Confidence 35433 33433 333589999999999999999999999874 455667788888 56776653
No 367
>PRK12831 putative oxidoreductase; Provisional
Probab=59.22 E-value=42 Score=32.58 Aligned_cols=52 Identities=23% Similarity=0.211 Sum_probs=37.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCC-CCC--HHHHHHHHHhCC
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGF-EPD--KETVEKARKAGI 157 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~-~~~--~~~~~~~~~~g~ 157 (261)
..|++|++||. ++++...+..+..+|.+++++..... .++ ...++.+++.|+
T Consensus 279 ~~gk~VvVIGg-G~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV 333 (464)
T PRK12831 279 KVGKKVAVVGG-GNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGV 333 (464)
T ss_pred cCCCeEEEECC-cHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCC
Confidence 46899999997 67888888888899999888876442 222 233345666663
No 368
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=59.18 E-value=67 Score=28.87 Aligned_cols=55 Identities=18% Similarity=0.325 Sum_probs=40.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcC
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITND 165 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d 165 (261)
|.+| +..-.+|-.+|++..++.+|++.+++-|+.- ++..++.++..| +++...+.
T Consensus 53 ~~~v-v~~SsGN~g~alA~~a~~~G~~~~i~vp~~~--~~~k~~~~~~~G-a~v~~~~~ 107 (291)
T cd01561 53 GTTI-IEPTSGNTGIGLAMVAAAKGYRFIIVMPETM--SEEKRKLLRALG-AEVILTPE 107 (291)
T ss_pred CCEE-EEeCCChHHHHHHHHHHHcCCeEEEEECCCC--CHHHHHHHHHcC-CEEEEeCC
Confidence 3444 3344589999999999999999999999863 355566778888 56776544
No 369
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=58.90 E-value=1.1e+02 Score=27.69 Aligned_cols=86 Identities=13% Similarity=0.112 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH-hCCCeEEE-E--c
Q 024871 89 CQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK-AGISKIEI-T--N 164 (261)
Q Consensus 89 tQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~-~g~~~i~~-~--~ 164 (261)
+..++-+..+.+.-+--.|.+|.+.|..+.+.+..+.++..+|++++..+.. ++-.+.+++ .|...+.- . +
T Consensus 134 ~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~-----~~~~~~~~~~lGa~~vi~~~~~~ 208 (338)
T cd08295 134 MPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGS-----DEKVDLLKNKLGFDDAFNYKEEP 208 (338)
T ss_pred cHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHhcCCceeEEcCCcc
Confidence 3334444444443333568999999988889999999999999987665532 233455665 66432221 1 1
Q ss_pred CHHHHh-----CCCCEEEEe
Q 024871 165 DPKEVV-----QGADVVYSD 179 (261)
Q Consensus 165 d~~~a~-----~~aDviy~~ 179 (261)
+..+.+ .++|+++-.
T Consensus 209 ~~~~~i~~~~~~gvd~v~d~ 228 (338)
T cd08295 209 DLDAALKRYFPNGIDIYFDN 228 (338)
T ss_pred cHHHHHHHhCCCCcEEEEEC
Confidence 343333 357888743
No 370
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=58.76 E-value=1.1e+02 Score=30.28 Aligned_cols=164 Identities=12% Similarity=0.089 Sum_probs=83.5
Q ss_pred HHHHHhcCCeEEEeC-CCC----------cCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCC-C
Q 024871 17 ETGFSLLGGHAIYLG-PDD----------IQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLT-D 84 (261)
Q Consensus 17 e~A~~~LGg~~~~l~-~~~----------s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~-~ 84 (261)
..=...+|.++..+. .+. .-...|-+++|..+.-++-+.+++-+.......+.+.+.-++|.+.... -
T Consensus 240 krlL~~~Gi~~~~l~d~s~~~d~p~~g~~~~~~ggttleei~~a~~A~~~ivl~~~~~~~~a~~l~~~~g~p~~~~~~Pi 319 (515)
T TIGR01286 240 KRILSLMGVGYTLLSDPEEVLDTPADGEFRMYAGGTTLEEMKDAPNAEATVLLQPYTLRKTKEYIEKTWKQETPKLNIPL 319 (515)
T ss_pred HHHHHHcCCCeEEccCccccccCCCCCCccccCCCCCHHHHHHhhhCcEEEEEchhhhHHHHHHHHHHhCCCcccCCCCc
Confidence 334568899988653 221 1123578899988877776666554433333455566666777655321 1
Q ss_pred CCCh----hHHHHHHHH------HHHH-----------hCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEE-EeCCCCC
Q 024871 85 YNHP----CQIMADALT------IIEH-----------VGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFV-CACPKGF 142 (261)
Q Consensus 85 ~~HP----tQ~L~Dl~T------i~e~-----------~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~-~~~P~~~ 142 (261)
+-.. .+.|++++- +.+. ...+.|+|+++.||.. -+.++...+.-+|++.+ ++++.+-
T Consensus 320 Gi~~Td~fL~~la~~~g~~ip~~i~~eR~rl~dam~d~~~~l~GKrvaI~gdpd-~~~~l~~fL~ElGmepv~v~~~~~~ 398 (515)
T TIGR01286 320 GVKGTDEFLMKVSEISGQPIPAELTKERGRLVDAMTDSHAWLHGKRFAIYGDPD-FVMGLVRFVLELGCEPVHILCTNGT 398 (515)
T ss_pred cHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhcCceEEEECCHH-HHHHHHHHHHHCCCEEEEEEeCCCC
Confidence 1112 222333321 1111 1237899999999853 34445544556898855 3444321
Q ss_pred CC-CHHHHHHHHHh--CC-CeEEEEcCHHH---Hh--CCCCEEEEecc
Q 024871 143 EP-DKETVEKARKA--GI-SKIEITNDPKE---VV--QGADVVYSDVW 181 (261)
Q Consensus 143 ~~-~~~~~~~~~~~--g~-~~i~~~~d~~~---a~--~~aDviy~~~w 181 (261)
.. .+++.+.+... |. ..+..-.|+.+ .+ .+.|+++...+
T Consensus 399 ~~~~~~l~~ll~~~~~~~~~~v~~~~Dl~~l~~~l~~~~~DlliG~s~ 446 (515)
T TIGR01286 399 KRWKAEMKALLAASPYGQNATVWIGKDLWHLRSLVFTEPVDFLIGNSY 446 (515)
T ss_pred HHHHHHHHHHHhcCCCCCccEEEeCCCHHHHHHHHhhcCCCEEEECch
Confidence 11 12222222221 21 22322235443 33 36888888753
No 371
>PLN02858 fructose-bisphosphate aldolase
Probab=58.76 E-value=30 Score=38.53 Aligned_cols=65 Identities=17% Similarity=0.121 Sum_probs=45.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
..+|+||| .+++...++.-+..-|.++++. ...++-.+.+.+.|. ...+++.++++++|+|++-.
T Consensus 4 ~~~IGfIG-LG~MG~~mA~~L~~~G~~v~v~-----dr~~~~~~~l~~~Ga---~~~~s~~e~a~~advVi~~l 68 (1378)
T PLN02858 4 AGVVGFVG-LDSLSFELASSLLRSGFKVQAF-----EISTPLMEKFCELGG---HRCDSPAEAAKDAAALVVVL 68 (1378)
T ss_pred CCeEEEEc-hhHHHHHHHHHHHHCCCeEEEE-----cCCHHHHHHHHHcCC---eecCCHHHHHhcCCEEEEEc
Confidence 57899999 4667666666666678877643 334444455555662 45789999999999999853
No 372
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=58.74 E-value=69 Score=28.92 Aligned_cols=61 Identities=13% Similarity=0.207 Sum_probs=42.6
Q ss_pred HhCC-CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcC
Q 024871 101 HVGR-LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITND 165 (261)
Q Consensus 101 ~~g~-l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d 165 (261)
..|. -.|.+| +..-.+|...|++..++.+|++.+++.|++.. +..++..+.+| +.+..++.
T Consensus 50 ~~g~~~~g~~v-v~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~--~~k~~~~~~~G-A~v~~~~~ 111 (298)
T TIGR01139 50 KRGLLKPGKTI-VEPTSGNTGIALAMVAAARGYKLILTMPETMS--IERRKLLKAYG-AELVLTPG 111 (298)
T ss_pred HcCCCCCCCEE-EEeCCChhHHHHHHHHHHcCCeEEEEeCCccC--HHHHHHHHHcC-CEEEEECC
Confidence 3354 344555 22234899999999999999999999998743 34456677888 56776644
No 373
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=58.57 E-value=37 Score=25.70 Aligned_cols=65 Identities=29% Similarity=0.403 Sum_probs=40.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhcC--CcEEEEeCCCCCCCCHHHHHH-HHHhCCCeEEEEcCHHHHhC--CCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVI--PFHFVCACPKGFEPDKETVEK-ARKAGISKIEITNDPKEVVQ--GADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~--g~~~~~~~P~~~~~~~~~~~~-~~~~g~~~i~~~~d~~~a~~--~aDviy~~~ 180 (261)
+||++||- ++.....+...... +.+++-++- ++++..+. +++.|. ..++|.++.++ +.|+|+.-+
T Consensus 1 i~v~iiG~-G~~g~~~~~~~~~~~~~~~v~~v~d----~~~~~~~~~~~~~~~---~~~~~~~~ll~~~~~D~V~I~t 70 (120)
T PF01408_consen 1 IRVGIIGA-GSIGRRHLRALLRSSPDFEVVAVCD----PDPERAEAFAEKYGI---PVYTDLEELLADEDVDAVIIAT 70 (120)
T ss_dssp EEEEEEST-SHHHHHHHHHHHHTTTTEEEEEEEC----SSHHHHHHHHHHTTS---EEESSHHHHHHHTTESEEEEES
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCcEEEEEEe----CCHHHHHHHHHHhcc---cchhHHHHHHHhhcCCEEEEec
Confidence 48999997 44455444443333 567664432 23333333 445663 37889999987 789998875
No 374
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=58.51 E-value=1.9e+02 Score=28.32 Aligned_cols=67 Identities=21% Similarity=0.203 Sum_probs=40.5
Q ss_pred HHHHHHHHhcCCeEEE-----eC--CCCcCCCCCC--CHHHHHHHHhhh-ccEEEEeeCCcchHHHHhhhCCCcEEeC
Q 024871 14 VSFETGFSLLGGHAIY-----LG--PDDIQMGKRE--ETRDAARVLCRY-NDIIMARVFGHQDILDLAKFATVPVING 81 (261)
Q Consensus 14 ~SFe~A~~~LGg~~~~-----l~--~~~s~~~kgE--s~~Dt~~~ls~~-~D~iv~R~~~~~~~~~~a~~~~vPVINa 81 (261)
+-+..|+.+.|++-+. +. .++-....|| |.+..++.|+.+ +|-++.=......++.+-. ..+||.|.
T Consensus 187 LllidAlr~agAkrItlViPYl~YaRQDR~~~~gepIsak~vA~lL~~~G~d~VitvDlHs~~i~~fF~-~~iPvdnl 263 (439)
T PTZ00145 187 LLMISTCRRASAKKITAVIPYYGYARQDRKLSSRVPISAADVARMIEAMGVDRVVAIDLHSGQIQGFFG-PRVPVDNL 263 (439)
T ss_pred HHHHHHHHHhccCeEEEEeecccchheecccCCCCChhHHHHHHHHHHcCCCeEEEEecChHHHHhhcC-CCcccccc
Confidence 3456789999996332 22 2333344566 667899999997 8877765443333443321 24777764
No 375
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=58.16 E-value=69 Score=30.38 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=18.9
Q ss_pred CeEEEEcCHHHHhCCCCEEEEe
Q 024871 158 SKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 158 ~~i~~~~d~~~a~~~aDviy~~ 179 (261)
.++...+|+.++++|||+++.-
T Consensus 91 ~NvvAv~dl~ea~~dADilvf~ 112 (372)
T KOG2711|consen 91 ENVVAVPDLVEAAKDADILVFV 112 (372)
T ss_pred CCeEecchHHHHhccCCEEEEe
Confidence 3567789999999999998885
No 376
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=58.02 E-value=52 Score=29.42 Aligned_cols=65 Identities=20% Similarity=0.117 Sum_probs=41.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhcC--CcEEEEeCCCCCCCCHHHHH-HHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVI--PFHFVCACPKGFEPDKETVE-KARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~--g~~~~~~~P~~~~~~~~~~~-~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+||+++|- +++..+.+..+... +.+++.++.. +++..+ .++..| ...++|+++.++++|+|+--.
T Consensus 2 mrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~----~~~~a~~~a~~~~---~~~~~~~~ell~~~DvVvi~a 69 (265)
T PRK13304 2 LKIGIVGC-GAIASLITKAILSGRINAELYAFYDR----NLEKAENLASKTG---AKACLSIDELVEDVDLVVECA 69 (265)
T ss_pred CEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECC----CHHHHHHHHHhcC---CeeECCHHHHhcCCCEEEEcC
Confidence 58999995 77777777665543 5665544432 222222 233344 245788999889999998764
No 377
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=57.86 E-value=68 Score=31.64 Aligned_cols=84 Identities=12% Similarity=0.176 Sum_probs=55.5
Q ss_pred HHHHHHHhC---CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEE----cCHH
Q 024871 95 ALTIIEHVG---RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEIT----NDPK 167 (261)
Q Consensus 95 l~Ti~e~~g---~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~----~d~~ 167 (261)
|+.++++|. .|+|.||+.+=-...=.--+++.+...|.++..++++-+...++....+.+.| .+.++ ++++
T Consensus 30 L~~~~~~~~~~~pl~G~ri~~~lh~~~~Ta~l~~tL~~~GA~v~~~~~n~~stqD~~aaal~~~g--~i~vfa~~g~t~e 107 (476)
T PTZ00075 30 LMALREEYGPSKPLKGARITGCLHMTVQTAVLIETLKALGAEVRWCSCNIFSTQDHAAAAIAKAG--SVPVFAWKGETLE 107 (476)
T ss_pred HHHHHHHHhccCCCCCCEEEEEEcchHHHHHHHHHHHHcCCEEEEEcCCCCccccHHHHHHHhcC--CeEEEEecCCCHH
Confidence 567777774 49999988755443222346777788899999999877888777766555665 23443 3444
Q ss_pred -------HHhC-----CCCEEEEec
Q 024871 168 -------EVVQ-----GADVVYSDV 180 (261)
Q Consensus 168 -------~a~~-----~aDviy~~~ 180 (261)
.++. +-|+|+=|.
T Consensus 108 ey~~~~~~~l~~~~~~~p~~i~DdG 132 (476)
T PTZ00075 108 EYWWCTEQALKWPNGDGPNLIVDDG 132 (476)
T ss_pred HHHHHHHHHHhccCCCCCCEEEECC
Confidence 4554 467776653
No 378
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=57.73 E-value=1.9e+02 Score=28.17 Aligned_cols=162 Identities=22% Similarity=0.226 Sum_probs=93.6
Q ss_pred EEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcc---hHH-HHhhhCCCcEEeCCCCCCChhHH--HHHHHHHHH
Q 024871 27 AIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQ---DIL-DLAKFATVPVINGLTDYNHPCQI--MADALTIIE 100 (261)
Q Consensus 27 ~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~---~~~-~~a~~~~vPVINa~~~~~HPtQ~--L~Dl~Ti~e 100 (261)
++.++.+ ..+-+.++++.++.-+-.|.+-.-... .++ .+-+...+||+| |..|=|-+ |+=++.-.+
T Consensus 120 pI~ld~~-----~~~ei~~~Vkal~p~FgginLedi~ap~cf~ie~~lr~~~~IPvFh---DDqqGTaiv~lA~llnalk 191 (432)
T COG0281 120 PIELDVG-----TNNEIIEFVKALEPTFGGINLEDIDAPRCFAIEERLRYRMNIPVFH---DDQQGTAIVTLAALLNALK 191 (432)
T ss_pred eeEeeCC-----ChHHHHHHHHHhhhcCCCcceeecccchhhHHHHHHhhcCCCCccc---ccccHHHHHHHHHHHHHHH
Confidence 4455543 344589999999987655555443222 233 334557899999 55666654 455555566
Q ss_pred HhC-CCCCcEEEEEcCC-CchHHHHHHHHhcC-CcEEEEeCCCCCC--------CCHHHHHHHH-HhCCCeEEEEcCHHH
Q 024871 101 HVG-RLEGTKVVYVGDG-NNIVHSWLLMASVI-PFHFVCACPKGFE--------PDKETVEKAR-KAGISKIEITNDPKE 168 (261)
Q Consensus 101 ~~g-~l~~~~i~~vGd~-~~v~~S~~~~~~~~-g~~~~~~~P~~~~--------~~~~~~~~~~-~~g~~~i~~~~d~~~ 168 (261)
..| .|+..||++.|-+ .+++-.-+.....+ .-+++++--+|.- +.+.-..+++ ..+ .. .. ++
T Consensus 192 ~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~-~~---~~--~~ 265 (432)
T COG0281 192 LTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTG-ER---TL--DL 265 (432)
T ss_pred HhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhc-cc---cc--cc
Confidence 666 4999999999976 33433322222222 1356666544432 1222222332 222 11 11 44
Q ss_pred HhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC
Q 024871 169 VVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC 219 (261)
Q Consensus 169 a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~ 219 (261)
++.++||++-.+ ++ =-+++|+++...++.+||-.
T Consensus 266 ~~~~adv~iG~S----~~-------------G~~t~e~V~~Ma~~PiIfal 299 (432)
T COG0281 266 ALAGADVLIGVS----GV-------------GAFTEEMVKEMAKHPIIFAL 299 (432)
T ss_pred cccCCCEEEEcC----CC-------------CCcCHHHHHHhccCCEEeec
Confidence 899999999875 22 12678888877777777653
No 379
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=57.58 E-value=72 Score=28.89 Aligned_cols=76 Identities=16% Similarity=0.281 Sum_probs=49.8
Q ss_pred CCChhHHHHH-----HHHHHHHhCCC-CCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCC
Q 024871 85 YNHPCQIMAD-----ALTIIEHVGRL-EGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGIS 158 (261)
Q Consensus 85 ~~HPtQ~L~D-----l~Ti~e~~g~l-~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~ 158 (261)
..+||-..=| ++.-.+..|.+ .|.+|+- .-.+|...|++..++.+|++++++.|+.. ++..++.++.+| +
T Consensus 31 ~~nptGS~K~R~a~~~v~~a~~~g~~~~g~~vv~-aSsGN~g~alA~~a~~~G~~~~i~~p~~~--~~~k~~~~~~~G-A 106 (290)
T TIGR01138 31 GNNPAGSVKDRPALSMIVEAEKRGEIKPGDVLIE-ATSGNTGIALAMIAALKGYRMKLLMPDNM--SQERKAAMRAYG-A 106 (290)
T ss_pred cCCCCccHHHHHHHHHHHHHHHcCCCCCCCEEEE-ECCChHHHHHHHHHHHcCCeEEEEECCCC--CHHHHHHHHHcC-C
Confidence 3466655444 22222334543 3444544 34589999999999999999999999864 344556778888 5
Q ss_pred eEEEEc
Q 024871 159 KIEITN 164 (261)
Q Consensus 159 ~i~~~~ 164 (261)
.+...+
T Consensus 107 ~v~~v~ 112 (290)
T TIGR01138 107 ELILVT 112 (290)
T ss_pred EEEEeC
Confidence 777665
No 380
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=57.08 E-value=64 Score=29.65 Aligned_cols=54 Identities=19% Similarity=0.192 Sum_probs=40.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEc
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITN 164 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~ 164 (261)
+.+|+-.+. +|...|++..+..+|++++++.|... ++..++.++.+| +.+....
T Consensus 51 ~~~vv~aSs-GN~g~alA~~a~~~G~~~~iv~p~~~--~~~k~~~l~~~G-A~v~~~~ 104 (316)
T cd06448 51 CVHVVCSSG-GNAGLAAAYAARKLGVPCTIVVPEST--KPRVVEKLRDEG-ATVVVHG 104 (316)
T ss_pred CCeEEEeCC-cHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHcC-CEEEEEC
Confidence 455655554 78999999999999999999989863 445566778888 5666654
No 381
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=56.78 E-value=1.4e+02 Score=26.65 Aligned_cols=48 Identities=19% Similarity=0.131 Sum_probs=36.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI 157 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~ 157 (261)
-.|.+|.+.|..+.+.+..+.++...|.+++..+.. ++-.+.+++.|.
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s-----~~~~~~~~~lGa 184 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGS-----DEKVAYLKKLGF 184 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHcCC
Confidence 467899999987889999999999999987655432 334566777774
No 382
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.73 E-value=63 Score=30.74 Aligned_cols=73 Identities=15% Similarity=0.189 Sum_probs=47.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCC-CCEEEEec
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQG-ADVVYSDV 180 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~-aDviy~~~ 180 (261)
++|+++.++|-+. +..|.+..+...|.++++..-... ......+.+++.|. .+...++..+.+.+ .|+|+..+
T Consensus 3 ~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~-~~~~~~~~l~~~g~-~~~~~~~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 3 YQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPF-SENPEAQELLEEGI-KVICGSHPLELLDEDFDLMVKNP 76 (447)
T ss_pred cCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCc-cchhHHHHHHhcCC-EEEeCCCCHHHhcCcCCEEEECC
Confidence 5789999999754 999999999899999887743222 22233344555563 44433455555554 89887754
No 383
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=56.13 E-value=24 Score=32.00 Aligned_cols=62 Identities=11% Similarity=0.108 Sum_probs=41.0
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHH---HhCCCCEEEEe
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKE---VVQGADVVYSD 179 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~---a~~~aDviy~~ 179 (261)
||++|| .+++..+++..+..-|.++.+. ..+++..+.+.+.|. ....++++ .++++|+|+.-
T Consensus 2 ~Ig~IG-lG~mG~~la~~L~~~g~~V~~~-----dr~~~~~~~l~~~g~---~~~~s~~~~~~~~~~~dvIi~~ 66 (298)
T TIGR00872 2 QLGLIG-LGRMGANIVRRLAKRGHDCVGY-----DHDQDAVKAMKEDRT---TGVANLRELSQRLSAPRVVWVM 66 (298)
T ss_pred EEEEEc-chHHHHHHHHHHHHCCCEEEEE-----ECCHHHHHHHHHcCC---cccCCHHHHHhhcCCCCEEEEE
Confidence 799999 4778888888777778887654 334445555555552 22345554 45678998875
No 384
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=55.86 E-value=65 Score=30.86 Aligned_cols=60 Identities=22% Similarity=0.341 Sum_probs=43.0
Q ss_pred HhCCC-CCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEc
Q 024871 101 HVGRL-EGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITN 164 (261)
Q Consensus 101 ~~g~l-~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~ 164 (261)
..|.+ .|.+|+-. -.+|.+.|++..|+.+|++++++.|++. +++-++..+..| +.+..+.
T Consensus 55 ~~g~~~~g~~vv~~-ssGN~g~alA~~a~~~G~~~~iv~p~~~--~~~k~~~~~~~G-A~v~~~~ 115 (454)
T TIGR01137 55 ASGRLKPGDTIIEP-TSGNTGIGLALVAAIKGYKCIIVLPEKM--SNEKVDVLKALG-AEIVRTP 115 (454)
T ss_pred HcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCeEEEEeCCCc--CHHHHHHHHHCC-CEEEEcC
Confidence 34543 34454443 3489999999999999999999999863 345566778888 5676654
No 385
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=55.75 E-value=79 Score=30.20 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=28.3
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPK 140 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~ 140 (261)
.+.|+|+++.||. ..+.|+...+.-+|++++.++.+
T Consensus 271 ~l~Gkrv~i~gd~-~~~~~l~~~L~elGm~~v~~~t~ 306 (407)
T TIGR01279 271 LLRGKKIFFFGDN-LLELPLARFLKRCGMEVVECGTP 306 (407)
T ss_pred hcCCCEEEEECCc-hHHHHHHHHHHHCCCEEEEecCC
Confidence 4899999999984 46677777777799998877653
No 386
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=55.68 E-value=48 Score=30.79 Aligned_cols=72 Identities=18% Similarity=0.064 Sum_probs=39.1
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCc-------EEEEeCC-CCC-CCCHHHHHHHHHh--CCCeEEEEcCHHHHhCCCCEEE
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPF-------HFVCACP-KGF-EPDKETVEKARKA--GISKIEITNDPKEVVQGADVVY 177 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~-------~~~~~~P-~~~-~~~~~~~~~~~~~--g~~~i~~~~d~~~a~~~aDviy 177 (261)
||+++|-.++|..+++..+...++ ++++.-= +.. ......+|..... ....+..+.+..++++++|+|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 689999868888888776654332 3555531 111 1111111111111 0122333446678999999988
Q ss_pred Eec
Q 024871 178 SDV 180 (261)
Q Consensus 178 ~~~ 180 (261)
.+.
T Consensus 81 itA 83 (324)
T TIGR01758 81 LVG 83 (324)
T ss_pred EcC
Confidence 864
No 387
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=55.67 E-value=87 Score=28.66 Aligned_cols=67 Identities=15% Similarity=0.058 Sum_probs=39.4
Q ss_pred EcCCCchHHHHHHHHhcCCc--EEEEeCCCCCCCCHHHHHHHHHh--CCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 113 VGDGNNIVHSWLLMASVIPF--HFVCACPKGFEPDKETVEKARKA--GISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 113 vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~~--g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
||- ++|.-+++..+...+. +++++-...-......+|..... ....++++.+..++++|||+|+.+.
T Consensus 2 IGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVita 72 (299)
T TIGR01771 2 IGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITA 72 (299)
T ss_pred CCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECC
Confidence 453 5677777766655553 67777654433444444432221 1123455555578999999998864
No 388
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=55.60 E-value=13 Score=34.16 Aligned_cols=73 Identities=19% Similarity=0.150 Sum_probs=46.1
Q ss_pred CCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCC--------HHH-----------HHHHHhhhccEEEEeeCCcc--
Q 024871 7 KPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREE--------TRD-----------AARVLCRYNDIIMARVFGHQ-- 65 (261)
Q Consensus 7 ~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs--------~~D-----------t~~~ls~~~D~iv~R~~~~~-- 65 (261)
+|..=|-.....|+.+.|-++.++++...++..|+- +.+ ...-++. .|++++|.....
T Consensus 14 ~~~~~st~~L~~aa~~rG~~v~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~-~D~v~~R~~~~~~~ 92 (312)
T TIGR01380 14 NIGKDTTFALMEEAQKRGHELFFYEPGDLSVVNGEVFARARPVRVGPNKQDWYTLGEKVRLSLGE-LDAVLMRKDPPFDM 92 (312)
T ss_pred CCCcChHHHHHHHHHHcCCEEEEEehhheEEECCEEEEEEEEEEeccCCcceeecCccccccccc-CCEEEEeCCCCCCh
Confidence 344445566788999999999999998766544421 111 1112222 599999973221
Q ss_pred ------hHHHHhhhCCCcEEe
Q 024871 66 ------DILDLAKFATVPVIN 80 (261)
Q Consensus 66 ------~~~~~a~~~~vPVIN 80 (261)
.+.+..+..++||||
T Consensus 93 ~~~~~~~~l~~le~~g~~viN 113 (312)
T TIGR01380 93 EYIYATYLLELADPTGTLVIN 113 (312)
T ss_pred hhhHHHHHHHHHHhCCCeEEe
Confidence 234555667899999
No 389
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=55.60 E-value=25 Score=32.32 Aligned_cols=35 Identities=11% Similarity=-0.043 Sum_probs=28.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCAC 138 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~ 138 (261)
.++++||.+.|..+.+...++..+..-|.+++.+.
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d 46 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLD 46 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEe
Confidence 47889999999988899888888777788876553
No 390
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=55.35 E-value=43 Score=32.87 Aligned_cols=123 Identities=20% Similarity=0.255 Sum_probs=74.0
Q ss_pred hHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHH----HHHHHHhhh----ccEEEEeeCCcch--HHHHhhhCCCcEEeC
Q 024871 12 TRVSFETGFSLLGGHAIYLGPDDIQMGKREETR----DAARVLCRY----NDIIMARVFGHQD--ILDLAKFATVPVING 81 (261)
Q Consensus 12 TR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~----Dt~~~ls~~----~D~iv~R~~~~~~--~~~~a~~~~vPVINa 81 (261)
..|+|| .+|+...+|.+. |.++. +.++.|... .| +|+-.+.++. ...+|+.+++|+-.+
T Consensus 249 ~~C~fe---------~vYfarpds~~~-g~~v~~~R~~~G~~La~~~~~~~D-~Vv~vPdsg~~~A~~~A~~lgip~~~~ 317 (469)
T PRK05793 249 QTCAFE---------YIYFARPDSVID-GISVYESRVRAGRQLYKEYPVDAD-IVIGVPDSGIPAAIGYAEASGIPYGIG 317 (469)
T ss_pred cccEEE---------EEEeccCCcccC-CeEhhHHHHHHHHHHHHhcCCCCC-EEEEcCccHHHHHHHHHHHhCCCEeee
Confidence 357777 356644344433 54444 355555443 46 4555676654 468889999997443
Q ss_pred C------C-CCCChhHHHHHHHHHHH---HhCCCCCcEEEEEcCC---CchHHHHHHHHhcCC---cEEEEeCCCCCCCC
Q 024871 82 L------T-DYNHPCQIMADALTIIE---HVGRLEGTKVVYVGDG---NNIVHSWLLMASVIP---FHFVCACPKGFEPD 145 (261)
Q Consensus 82 ~------~-~~~HPtQ~L~Dl~Ti~e---~~g~l~~~~i~~vGd~---~~v~~S~~~~~~~~g---~~~~~~~P~~~~~~ 145 (261)
. + ..--|+|..-+...-.+ ..+.++|++|.+|=|. +.+....+..+...| +++.+++|+--.|.
T Consensus 318 l~r~~~~~rtfi~~~q~~R~~~~~~k~~~~~~~v~gk~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~~~~p~~~~p~ 397 (469)
T PRK05793 318 FIKNKYVGRTFIAPSQELRERAVRVKLNPLKVNVEGKRVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFRVSSPPVKYPC 397 (469)
T ss_pred EEEeeeccccccChhHhhhhhhheEecccCccccCCCEEEEEccccCchHHHHHHHHHHHHcCCCEEEEEEECCCcCcch
Confidence 1 1 22357777665432111 1134799999999995 457777777777776 46777888655543
No 391
>PRK06608 threonine dehydratase; Provisional
Probab=55.25 E-value=40 Score=31.37 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=38.7
Q ss_pred CCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHH
Q 024871 116 GNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPK 167 (261)
Q Consensus 116 ~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~ 167 (261)
.+|...|++..++.+|++++++-|++. ++.-++.++.+| +.+..+++.+
T Consensus 80 sGN~g~alA~~a~~~G~~~~vv~p~~~--~~~k~~~l~~~G-A~V~~~~~~~ 128 (338)
T PRK06608 80 TGNHGQAVAYASKLFGIKTRIYLPLNT--SKVKQQAALYYG-GEVILTNTRQ 128 (338)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHhCC-CEEEEECCHH
Confidence 589999999999999999999989874 445566778888 6777776544
No 392
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=55.21 E-value=34 Score=33.87 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=45.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHH-----------HHHhCC----------CeEEEEcC
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEK-----------ARKAGI----------SKIEITND 165 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~-----------~~~~g~----------~~i~~~~d 165 (261)
=+||++||- +.+.+.++..++.-|.++++.-.. ++.++. ..+.|. +.++.+.|
T Consensus 5 ~~kV~VIGa-G~MG~gIA~~la~aG~~V~l~d~~-----~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~ 78 (503)
T TIGR02279 5 VVTVAVIGA-GAMGAGIAQVAASAGHQVLLYDIR-----AEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTD 78 (503)
T ss_pred ccEEEEECc-CHHHHHHHHHHHhCCCeEEEEeCC-----HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCC
Confidence 368999995 778888888888889888776432 222221 122331 24677888
Q ss_pred HHHHhCCCCEEEEec
Q 024871 166 PKEVVQGADVVYSDV 180 (261)
Q Consensus 166 ~~~a~~~aDviy~~~ 180 (261)
++ ++++||+|+.-.
T Consensus 79 ~~-~l~~aDlVIEav 92 (503)
T TIGR02279 79 LH-ALADAGLVIEAI 92 (503)
T ss_pred HH-HhCCCCEEEEcC
Confidence 86 578999999864
No 393
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=55.06 E-value=61 Score=26.27 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=43.3
Q ss_pred cEEEEEcCCCchHHHHH-HHHhc-C--CcEEEEeCCC---CCCCCHHHHHHHHHhCCCeEE--EEcCH-HHHhCCCCEEE
Q 024871 108 TKVVYVGDGNNIVHSWL-LMASV-I--PFHFVCACPK---GFEPDKETVEKARKAGISKIE--ITNDP-KEVVQGADVVY 177 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~-~~~~~-~--g~~~~~~~P~---~~~~~~~~~~~~~~~g~~~i~--~~~d~-~~a~~~aDviy 177 (261)
+||.||.- +|+++|-+ ++..+ + ++.+.-++-. +-.+++..++.+++.|.. +. ....+ ++-++++|.|+
T Consensus 3 ~~ILfVC~-gN~cRSpmAEa~~~~~~~~~~v~SaG~~~~~g~~~~~~a~~~l~~~Gid-~~~h~s~~lt~~~~~~~DlIl 80 (144)
T PRK11391 3 NSILVVCT-GNICRSPIGERLLRKRLPGVKVKSAGVHGLVKHPADATAADVAANHGVS-LEGHAGRKLTAEMARNYDLIL 80 (144)
T ss_pred CeEEEEcC-CcHhHHHHHHHHHHHhcCCeEEEcccccCCCCCCCCHHHHHHHHHcCCC-cCCCccCcCCHHHHhhCCEEE
Confidence 58999985 78999954 33322 2 3555555432 345778888888888842 11 11111 35688999999
Q ss_pred Ee
Q 024871 178 SD 179 (261)
Q Consensus 178 ~~ 179 (261)
+-
T Consensus 81 ~M 82 (144)
T PRK11391 81 AM 82 (144)
T ss_pred EC
Confidence 84
No 394
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=54.80 E-value=64 Score=29.87 Aligned_cols=70 Identities=16% Similarity=0.305 Sum_probs=42.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhcC-CcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhC-----CCCEEEEe
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASVI-PFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQ-----GADVVYSD 179 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~~-g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~-----~aDviy~~ 179 (261)
+.+||++|| .+++...++...... +++++.++- ..+..+-++.+++.|.. ..+++.++.++ +.|+|+--
T Consensus 3 ~klrVAIIG-tG~IGt~hm~~l~~~~~velvAVvd--id~es~gla~A~~~Gi~--~~~~~ie~LL~~~~~~dIDiVf~A 77 (302)
T PRK08300 3 SKLKVAIIG-SGNIGTDLMIKILRSEHLEPGAMVG--IDPESDGLARARRLGVA--TSAEGIDGLLAMPEFDDIDIVFDA 77 (302)
T ss_pred CCCeEEEEc-CcHHHHHHHHHHhcCCCcEEEEEEe--CChhhHHHHHHHHcCCC--cccCCHHHHHhCcCCCCCCEEEEC
Confidence 468999999 677777765544443 466664432 12222233556777742 22467888774 57888875
Q ss_pred c
Q 024871 180 V 180 (261)
Q Consensus 180 ~ 180 (261)
.
T Consensus 78 T 78 (302)
T PRK08300 78 T 78 (302)
T ss_pred C
Confidence 4
No 395
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=54.80 E-value=37 Score=30.28 Aligned_cols=64 Identities=20% Similarity=0.241 Sum_probs=41.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhcC-CcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEE
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVI-PFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYS 178 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~-g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~ 178 (261)
+||+++|-.+++....+..+... +++++.++-..-..... .... .+..++|+++.++++|+|+-
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~----~~~~---~i~~~~dl~~ll~~~DvVid 66 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG----QGAL---GVAITDDLEAVLADADVLID 66 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc----cCCC---CccccCCHHHhccCCCEEEE
Confidence 58999998688888887776654 57877655322111100 0112 23457889998889999884
No 396
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=54.62 E-value=1.8e+02 Score=29.45 Aligned_cols=105 Identities=18% Similarity=0.161 Sum_probs=62.3
Q ss_pred HHHhhh-CCCcEEeCCCCCCChh--HHHHHHHHHHHHhC-CCCCcEEEEEcCCC-c--hHHHHHHHHhc-CCc-------
Q 024871 68 LDLAKF-ATVPVINGLTDYNHPC--QIMADALTIIEHVG-RLEGTKVVYVGDGN-N--IVHSWLLMASV-IPF------- 132 (261)
Q Consensus 68 ~~~a~~-~~vPVINa~~~~~HPt--Q~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~-~--v~~S~~~~~~~-~g~------- 132 (261)
.-+.++ .++|++|= ..|=| =+|+=++.-.+..| +|+..||+++|-+. + ++.=++..... .|+
T Consensus 281 ~iL~ryr~~i~~FnD---DiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~ 357 (581)
T PLN03129 281 RLLQRYRTTHLCFND---DIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARK 357 (581)
T ss_pred HHHHHhccCCCEecc---ccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcC
Confidence 333443 48999993 23333 34555665555555 59999999999863 3 44444433322 244
Q ss_pred EEEEeCCCCCC-------CCHHHHHHHHHhCCCeEEEEcCHHHHhCC--CCEEEEec
Q 024871 133 HFVCACPKGFE-------PDKETVEKARKAGISKIEITNDPKEVVQG--ADVVYSDV 180 (261)
Q Consensus 133 ~~~~~~P~~~~-------~~~~~~~~~~~~g~~~i~~~~d~~~a~~~--aDviy~~~ 180 (261)
+++++--+|+- +.+....+++.. ....+++|++++ +||++-.+
T Consensus 358 ~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~-----~~~~~L~e~v~~vkptvLIG~S 409 (581)
T PLN03129 358 RIWLVDSKGLVTKSRKDSLQPFKKPFAHDH-----EPGASLLEAVKAIKPTVLIGLS 409 (581)
T ss_pred cEEEEcCCCeEeCCCCccChHHHHHHHhhc-----ccCCCHHHHHhccCCCEEEEec
Confidence 56655544432 223333444432 124689999999 89999876
No 397
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=54.59 E-value=1.6e+02 Score=28.86 Aligned_cols=65 Identities=14% Similarity=0.077 Sum_probs=44.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHh----CCCeEEEEcCHHHHhC---CCCEEEEe
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKA----GISKIEITNDPKEVVQ---GADVVYSD 179 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~----g~~~i~~~~d~~~a~~---~aDviy~~ 179 (261)
.+|+++| .+++..+++..+..-|.++++.. ..++..+.+.+. | ..+..+++++++++ ++|+|++-
T Consensus 2 ~~IgvIG-LG~MG~~lA~nL~~~G~~V~v~d-----r~~~~~~~l~~~~~~~g-~~i~~~~s~~e~v~~l~~~d~Iil~ 73 (470)
T PTZ00142 2 SDIGLIG-LAVMGQNLALNIASRGFKISVYN-----RTYEKTEEFVKKAKEGN-TRVKGYHTLEELVNSLKKPRKVILL 73 (470)
T ss_pred CEEEEEe-EhHHHHHHHHHHHHCCCeEEEEe-----CCHHHHHHHHHhhhhcC-CcceecCCHHHHHhcCCCCCEEEEE
Confidence 3789999 57888888888888888877553 344444433332 4 34567889999887 58966654
No 398
>PRK06450 threonine synthase; Validated
Probab=54.53 E-value=1.1e+02 Score=28.40 Aligned_cols=89 Identities=11% Similarity=0.186 Sum_probs=55.2
Q ss_pred CCCChhHHHHHHHHH-----HHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCC
Q 024871 84 DYNHPCQIMADALTI-----IEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGIS 158 (261)
Q Consensus 84 ~~~HPtQ~L~Dl~Ti-----~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~ 158 (261)
....||-..=|=-.. .... |.+-....-.+|...|++..++.+|++.+++-|+. .++.-++.++.+| +
T Consensus 72 E~~nPTGSfKDRga~~~i~~a~~~----g~~~vv~aSsGN~g~slA~~aa~~G~~~~i~vP~~--~~~~k~~~i~~~G-A 144 (338)
T PRK06450 72 DFLNPTGSYKDRGSVTLISYLAEK----GIKQISEDSSGNAGASIAAYGAAAGIEVKIFVPET--ASGGKLKQIESYG-A 144 (338)
T ss_pred cCCCCcCCCHHHHHHHHHHHHHHc----CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCC--CCHHHHHHHHHcC-C
Confidence 445788777662211 2222 33333333347899999999999999999999987 4455556778888 5
Q ss_pred eEEEEc-CHHH---HhCCCCEEEEe
Q 024871 159 KIEITN-DPKE---VVQGADVVYSD 179 (261)
Q Consensus 159 ~i~~~~-d~~~---a~~~aDviy~~ 179 (261)
.+...+ +.++ +.++-+.+|..
T Consensus 145 ~vi~v~~~~~~~~~~a~~~g~~~~~ 169 (338)
T PRK06450 145 EVVRVRGSREDVAKAAENSGYYYAS 169 (338)
T ss_pred EEEEECCCHHHHHHHHHhcCeEecc
Confidence 665443 3333 23344556664
No 399
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=54.53 E-value=57 Score=31.14 Aligned_cols=65 Identities=15% Similarity=0.200 Sum_probs=45.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEE-EEc---CHHHHhCCCCEEEEe
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIE-ITN---DPKEVVQGADVVYSD 179 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~-~~~---d~~~a~~~aDviy~~ 179 (261)
+++|+++|. +...+=+..++.++|.++.+..|..=.|...+- .+ -+. -++ .+.+.++.||||...
T Consensus 1 ~~tvgIlGG-GQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va---~~----~i~~~~dD~~al~ela~~~DViT~E 69 (375)
T COG0026 1 MKTVGILGG-GQLGRMMALAAARLGIKVIVLDPDADAPAAQVA---DR----VIVAAYDDPEALRELAAKCDVITYE 69 (375)
T ss_pred CCeEEEEcC-cHHHHHHHHHHHhcCCEEEEecCCCCCchhhcc---cc----eeecCCCCHHHHHHHHhhCCEEEEe
Confidence 468999996 666777788899999999999887666543321 11 111 122 356788899999886
No 400
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=54.51 E-value=1.3e+02 Score=25.16 Aligned_cols=67 Identities=21% Similarity=0.136 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHH-HHhhhccEEEEeeCCcchH-HHHhhhCCCcEEeCCC
Q 024871 13 RVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAAR-VLCRYNDIIMARVFGHQDI-LDLAKFATVPVINGLT 83 (261)
Q Consensus 13 R~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~-~ls~~~D~iv~R~~~~~~~-~~~a~~~~vPVINa~~ 83 (261)
.-+++.+++.+|.++...+.+.. .++....++ .+++-+|+|++=....... ...++..++|||-.++
T Consensus 18 ~~g~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~iii~~~~~~~~~~~~~~~~~ipvv~~~~ 86 (264)
T cd06267 18 LRGIEEAAREAGYSVLLCNSDED----PEKEREALELLLSRRVDGIILAPSRLDDELLEELAALGIPVVLVDR 86 (264)
T ss_pred HHHHHHHHHHcCCEEEEEcCCCC----HHHHHHHHHHHHHcCcCEEEEecCCcchHHHHHHHHcCCCEEEecc
Confidence 45788889999999887755422 133334444 3344589888865544443 3445778999887543
No 401
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=54.37 E-value=37 Score=30.52 Aligned_cols=56 Identities=21% Similarity=0.134 Sum_probs=39.1
Q ss_pred CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 117 NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 117 ~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+++..+++..+...|.++++..+ +++..+.+.+.| ...++++.++++++|+|++-.
T Consensus 5 G~mG~~mA~~L~~~G~~V~v~dr-----~~~~~~~l~~~g---~~~~~s~~~~~~~advVil~v 60 (288)
T TIGR01692 5 GNMGGPMAANLLKAGHPVRVFDL-----FPDAVEEAVAAG---AQAAASPAEAAEGADRVITML 60 (288)
T ss_pred cHhHHHHHHHHHhCCCeEEEEeC-----CHHHHHHHHHcC---CeecCCHHHHHhcCCEEEEeC
Confidence 56777777777777888776643 334444455555 245778999999999999864
No 402
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=54.18 E-value=1.3e+02 Score=26.14 Aligned_cols=89 Identities=26% Similarity=0.340 Sum_probs=59.6
Q ss_pred CCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC---CCeE
Q 024871 84 DYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG---ISKI 160 (261)
Q Consensus 84 ~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g---~~~i 160 (261)
...=|.-.-+.++......|.|+|++|+=.|.++. .+..+++.+|.+-+++ .+++++.++.++++. .+.+
T Consensus 23 QY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG---~La~ga~~lGa~~V~~----vdiD~~a~ei~r~N~~~l~g~v 95 (198)
T COG2263 23 QYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTG---ILAIGAALLGASRVLA----VDIDPEALEIARANAEELLGDV 95 (198)
T ss_pred ecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcC---HHHHHHHhcCCcEEEE----EecCHHHHHHHHHHHHhhCCce
Confidence 34456777788888877889999999999998655 3667888899765544 456777777776542 2344
Q ss_pred EE-EcCHHHHhCCCCEEEEe
Q 024871 161 EI-TNDPKEVVQGADVVYSD 179 (261)
Q Consensus 161 ~~-~~d~~~a~~~aDviy~~ 179 (261)
++ ..|..+-=...|.++|.
T Consensus 96 ~f~~~dv~~~~~~~dtvimN 115 (198)
T COG2263 96 EFVVADVSDFRGKFDTVIMN 115 (198)
T ss_pred EEEEcchhhcCCccceEEEC
Confidence 43 34555444455666665
No 403
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=54.12 E-value=61 Score=31.29 Aligned_cols=66 Identities=11% Similarity=0.156 Sum_probs=39.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH---------------HhCCCeEEEEcCHHHH
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR---------------KAGISKIEITNDPKEV 169 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~---------------~~g~~~i~~~~d~~~a 169 (261)
.+-.||+++|= ++|...++..++. +.+++.+ ..+++.++.++ +.| .+..+++.+ +
T Consensus 4 ~~~mkI~vIGl-GyvGlpmA~~la~-~~~V~g~-----D~~~~~ve~l~~G~~~~~e~~~~~l~~~g--~l~~t~~~~-~ 73 (425)
T PRK15182 4 IDEVKIAIIGL-GYVGLPLAVEFGK-SRQVVGF-----DVNKKRILELKNGVDVNLETTEEELREAR--YLKFTSEIE-K 73 (425)
T ss_pred CCCCeEEEECc-CcchHHHHHHHhc-CCEEEEE-----eCCHHHHHHHHCcCCCCCCCCHHHHHhhC--CeeEEeCHH-H
Confidence 34579999994 6666655555444 5665543 33333333333 222 356676654 7
Q ss_pred hCCCCEEEEec
Q 024871 170 VQGADVVYSDV 180 (261)
Q Consensus 170 ~~~aDviy~~~ 180 (261)
++++|++++-.
T Consensus 74 ~~~advvii~V 84 (425)
T PRK15182 74 IKECNFYIITV 84 (425)
T ss_pred HcCCCEEEEEc
Confidence 99999999853
No 404
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=53.81 E-value=56 Score=29.18 Aligned_cols=86 Identities=10% Similarity=0.103 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHHHhCCCCCcEEEEEcCCC----chHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEE
Q 024871 88 PCQIMADALTIIEHVGRLEGTKVVYVGDGN----NIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEIT 163 (261)
Q Consensus 88 PtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~----~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~ 163 (261)
|-.+|.++.++.+.+. .+..+++.|+.+ ..+..+..-+.+-|..+.++.-+ +++..++..- ..-...
T Consensus 88 ~~~~l~~~~~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~------el~~~Lk~~~-~~~~~~ 158 (254)
T COG1484 88 DKKALEDLASLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAP------DLLSKLKAAF-DEGRLE 158 (254)
T ss_pred hHHHHHHHHHHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHH------HHHHHHHHHH-hcCchH
Confidence 7789999999998887 889999999853 36666665555778888877532 3333333321 010112
Q ss_pred cCHHHHhCCCCEEEEeccc
Q 024871 164 NDPKEVVQGADVVYSDVWA 182 (261)
Q Consensus 164 ~d~~~a~~~aDviy~~~w~ 182 (261)
..+...++.+|+++.|-+.
T Consensus 159 ~~l~~~l~~~dlLIiDDlG 177 (254)
T COG1484 159 EKLLRELKKVDLLIIDDIG 177 (254)
T ss_pred HHHHHHhhcCCEEEEeccc
Confidence 2345568999999999863
No 405
>COG0014 ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
Probab=53.74 E-value=9.3 Score=36.70 Aligned_cols=41 Identities=37% Similarity=0.392 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeC
Q 024871 39 KREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVING 81 (261)
Q Consensus 39 kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa 81 (261)
..|++.+..+ +.+|.|+|+-|.. .+-++...++++||||-.
T Consensus 183 ~R~~v~~ll~-l~~yiD~iIPRGg-~~Li~~v~~~a~vPVi~~ 223 (417)
T COG0014 183 DREEVLELLR-LDGYIDLVIPRGG-AGLIRRVVENATVPVIEH 223 (417)
T ss_pred CHHHHHHHHh-hcCceeEEEcCCc-HHHHHHHHhCCcCCEEec
Confidence 4788888888 8999999999955 446788889999999984
No 406
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=53.35 E-value=1.1e+02 Score=26.95 Aligned_cols=75 Identities=24% Similarity=0.225 Sum_probs=46.8
Q ss_pred HHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcE-EEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHh------CC
Q 024871 100 EHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFH-FVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVV------QG 172 (261)
Q Consensus 100 e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~-~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~------~~ 172 (261)
+..+...|.+|++.|. +.+.+..+.++..+|.+ ++.+.. .++-++.+++.|...+.-.++..+.+ ++
T Consensus 114 ~~~~~~~g~~VlV~G~-G~vG~~~~~~ak~~G~~~Vi~~~~-----~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g 187 (280)
T TIGR03366 114 EAAGDLKGRRVLVVGA-GMLGLTAAAAAAAAGAARVVAADP-----SPDRRELALSFGATALAEPEVLAERQGGLQNGRG 187 (280)
T ss_pred HhccCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECC-----CHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCC
Confidence 3344568899999997 67888888888889986 655532 33445677788743222122222222 35
Q ss_pred CCEEEEec
Q 024871 173 ADVVYSDV 180 (261)
Q Consensus 173 aDviy~~~ 180 (261)
+|+++-..
T Consensus 188 ~d~vid~~ 195 (280)
T TIGR03366 188 VDVALEFS 195 (280)
T ss_pred CCEEEECC
Confidence 78887654
No 407
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=53.05 E-value=1.7e+02 Score=26.10 Aligned_cols=85 Identities=11% Similarity=0.189 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHHhCCCC------CcEEEEEcCCCchHHHHHHHHhcC-CcEEEEeCCCCCCCCHHHHHHHHHhCCCeE
Q 024871 88 PCQIMADALTIIEHVGRLE------GTKVVYVGDGNNIVHSWLLMASVI-PFHFVCACPKGFEPDKETVEKARKAGISKI 160 (261)
Q Consensus 88 PtQ~L~Dl~Ti~e~~g~l~------~~~i~~vGd~~~v~~S~~~~~~~~-g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i 160 (261)
|+..++-++.+.+. +.+. |.+|.+.|..+.+.+..+.++..+ |.+++.++... +-.+.+++.|...+
T Consensus 125 ~~~~~ta~~~l~~~-~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~-----~~~~~l~~~g~~~~ 198 (336)
T TIGR02817 125 PLTSITAWELLFDR-LGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGLTVIATASRP-----ESQEWVLELGAHHV 198 (336)
T ss_pred hHHHHHHHHHHHHh-cCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcH-----HHHHHHHHcCCCEE
Confidence 55555556655443 3343 789999998788999999888877 99887775542 22345566664322
Q ss_pred EE-EcCHHHHh-----CCCCEEEE
Q 024871 161 EI-TNDPKEVV-----QGADVVYS 178 (261)
Q Consensus 161 ~~-~~d~~~a~-----~~aDviy~ 178 (261)
.- ..+..+.+ ++.|+++-
T Consensus 199 ~~~~~~~~~~i~~~~~~~vd~vl~ 222 (336)
T TIGR02817 199 IDHSKPLKAQLEKLGLEAVSYVFS 222 (336)
T ss_pred EECCCCHHHHHHHhcCCCCCEEEE
Confidence 21 22333332 35788874
No 408
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=53.00 E-value=18 Score=33.40 Aligned_cols=26 Identities=31% Similarity=0.744 Sum_probs=19.4
Q ss_pred eEEEEcCHHHHhCCCCEEEEecccCcch
Q 024871 159 KIEITNDPKEVVQGADVVYSDVWASMGQ 186 (261)
Q Consensus 159 ~i~~~~d~~~a~~~aDviy~~~w~~~~~ 186 (261)
.+++++|-.||++++|++++ |-..|.
T Consensus 126 GvkVtsDD~EAv~~aei~I~--ftPfG~ 151 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIIT--WLPKGN 151 (340)
T ss_pred CceEecCcHHHhcCCCEEEE--EcCCCC
Confidence 35667777899999999987 444453
No 409
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=52.96 E-value=62 Score=28.79 Aligned_cols=66 Identities=17% Similarity=0.269 Sum_probs=42.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCC----e----EEEEcCHHHHhCCCCEEEEe
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGIS----K----IEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~----~----i~~~~d~~~a~~~aDviy~~ 179 (261)
.||+++|- +++...++..++.-|.+++++.... +..+..++.|.. . +...++++++ +++|+|+..
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~~V~~~~r~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila 73 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGHDVTLVARRG-----AHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILA 73 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCh-----HHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEe
Confidence 37999996 7788888877777788888877532 223334444421 0 1234556654 999998876
Q ss_pred c
Q 024871 180 V 180 (261)
Q Consensus 180 ~ 180 (261)
.
T Consensus 74 ~ 74 (304)
T PRK06522 74 V 74 (304)
T ss_pred c
Confidence 3
No 410
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=52.95 E-value=34 Score=31.57 Aligned_cols=52 Identities=21% Similarity=0.244 Sum_probs=41.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCC-CCCCCHHHHHHHHHhC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPK-GFEPDKETVEKARKAG 156 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~-~~~~~~~~~~~~~~~g 156 (261)
.++|++|+.+|. +|.+--+++.++.++-+++++... .+...+..++.++++.
T Consensus 140 ~~~~k~v~ViGg-G~sAve~Al~L~~~a~~Vtlv~r~~~~ra~~~~~~~l~~~~ 192 (305)
T COG0492 140 FFKGKDVVVIGG-GDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLKKNV 192 (305)
T ss_pred cccCCeEEEEcC-CHHHHHHHHHHHHhcCeEEEEecCcccCcCHHHHHHHHhcC
Confidence 478899999996 778888888888888878877764 5777788888888763
No 411
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=52.77 E-value=1.3e+02 Score=24.70 Aligned_cols=78 Identities=19% Similarity=0.163 Sum_probs=46.0
Q ss_pred CEeeccCC-C----hhhHHHHHHHHHh--cCCeEEEeCCCCcCCCCCCCHHHHHHHHhh-hccEEEEeeCCcch--HHHH
Q 024871 1 MSMIFAKP-S----MRTRVSFETGFSL--LGGHAIYLGPDDIQMGKREETRDAARVLCR-YNDIIMARVFGHQD--ILDL 70 (261)
Q Consensus 1 l~~lF~~~-S----tRTR~SFe~A~~~--LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~-~~D~iv~R~~~~~~--~~~~ 70 (261)
++.+|... + .+-.-.++.++.. .|.++...+.... .+.....++.+.. -+|+++.=...... +...
T Consensus 2 Ig~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~~ 77 (269)
T cd01391 2 IGVLLPLSGSAPFGAQLLAGIELAAEEIGRGLEVILADSQSD----PERALEALRDLIQQGVDGIIGPPSSSSALAVVEL 77 (269)
T ss_pred ceEEeecCCCcHHHHHHHHHHHHHHHHhCCceEEEEecCCCC----HHHHHHHHHHHHHcCCCEEEecCCCHHHHHHHHH
Confidence 35566544 1 3344567778888 7777777755422 1334444443333 47988875443333 4566
Q ss_pred hhhCCCcEEeCC
Q 024871 71 AKFATVPVINGL 82 (261)
Q Consensus 71 a~~~~vPVINa~ 82 (261)
++..++|+|...
T Consensus 78 ~~~~~ip~v~~~ 89 (269)
T cd01391 78 AAAAGIPVVSLD 89 (269)
T ss_pred HHHcCCcEEEec
Confidence 677899998854
No 412
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=52.60 E-value=19 Score=33.27 Aligned_cols=24 Identities=38% Similarity=0.789 Sum_probs=18.6
Q ss_pred EEEEcCHHHHhCCCCEEEEecccCcc
Q 024871 160 IEITNDPKEVVQGADVVYSDVWASMG 185 (261)
Q Consensus 160 i~~~~d~~~a~~~aDviy~~~w~~~~ 185 (261)
+++++|-.||++++|++++ |-..|
T Consensus 129 vkVtsDD~EAvk~aei~I~--ftPfG 152 (342)
T PRK00961 129 LKVTTDDREAVADADIVIT--WLPKG 152 (342)
T ss_pred ceEecCcHHHhcCCCEEEE--ecCCC
Confidence 5667777899999999887 43445
No 413
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=52.44 E-value=65 Score=33.29 Aligned_cols=71 Identities=17% Similarity=0.097 Sum_probs=46.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCH------HHHHHHHHhC----------CCeEEEEcCHHHHhC
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDK------ETVEKARKAG----------ISKIEITNDPKEVVQ 171 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~------~~~~~~~~~g----------~~~i~~~~d~~~a~~ 171 (261)
+||++||- +.+.+.++..++.-|.+|++.-+..-.+.. ..+++..+.| .+.++.+.|+ ++++
T Consensus 314 ~~v~ViGa-G~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 391 (715)
T PRK11730 314 KQAAVLGA-GIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFE 391 (715)
T ss_pred ceEEEECC-chhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhc
Confidence 57999995 678888888888889998877654321110 1111111222 1468888887 5689
Q ss_pred CCCEEEEec
Q 024871 172 GADVVYSDV 180 (261)
Q Consensus 172 ~aDviy~~~ 180 (261)
+||+|+=-.
T Consensus 392 ~aDlViEav 400 (715)
T PRK11730 392 RVDVVVEAV 400 (715)
T ss_pred CCCEEEecc
Confidence 999998654
No 414
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=52.24 E-value=1.9e+02 Score=26.54 Aligned_cols=129 Identities=16% Similarity=0.220 Sum_probs=69.2
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeE-----EEeCCCCcCCCCCCCHHHHHHHHhhhc--cEEE-EeeCCcc---hHHH
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHA-----IYLGPDDIQMGKREETRDAARVLCRYN--DIIM-ARVFGHQ---DILD 69 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~-----~~l~~~~s~~~kgEs~~Dt~~~ls~~~--D~iv-~R~~~~~---~~~~ 69 (261)
++.+|+..+.-.+..|+.|+.+.-... +.+.+......+..+. .+++.++.+. .+++ +=..... .+..
T Consensus 2 iG~if~~~~~~~~~a~~~Av~~iN~~~~~~~~~~l~~~~~~~~~~d~~-~~~~~~c~ll~~~V~aiiGp~~s~~~~~~~~ 80 (382)
T cd06380 2 IGGLFDVDEDQEYSAFRFAISQHNTNPNSTAPFKLLPHVDNLDTSDSF-ALTNAICSQLSRGVFAIFGSYDKSSVNTLTS 80 (382)
T ss_pred ceeEECCCChHHHHHHHHHHHHhcccccccCCeeeeeeeeEecccchH-HHHHHHHHHHhcCcEEEEecCcHHHHHHHHH
Confidence 578999999999999999998776532 1222111111122333 3333333321 2332 2222222 3456
Q ss_pred HhhhCCCcEEeCC-C-C---CC-------Ch--hHHHHHHHHHHHHhCCCCCcEEEEEcCCCc---hHHHHHHHHhcCC-
Q 024871 70 LAKFATVPVINGL-T-D---YN-------HP--CQIMADALTIIEHVGRLEGTKVVYVGDGNN---IVHSWLLMASVIP- 131 (261)
Q Consensus 70 ~a~~~~vPVINa~-~-~---~~-------HP--tQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~---v~~S~~~~~~~~g- 131 (261)
+++..+||.|... + + .. .| .++++|++ ++ +..+||+++.|... .+..+...+...|
T Consensus 81 ~~~~~~iP~i~~~~~~~~l~~~~~~~fr~~p~~~~a~~~~~---~~---~~wk~vaii~~~~~~~~~~~~~~~~~~~~g~ 154 (382)
T cd06380 81 YSDALHVPFITPSFPTNDLDDGNQFVLQMRPSLIQALVDLI---EH---YGWRKVVYLYDSDRGLLRLQQLLDYLREKDN 154 (382)
T ss_pred HHhcCCCCeEecCCCcccCCCCCcEEEEeccchhHHHHHHH---Hh---cCCeEEEEEECCCcchHHHHHHHHHHhccCC
Confidence 7788899999632 1 1 11 22 24444442 33 45789999987432 3445556666667
Q ss_pred -cEEEE
Q 024871 132 -FHFVC 136 (261)
Q Consensus 132 -~~~~~ 136 (261)
..+..
T Consensus 155 ~i~v~~ 160 (382)
T cd06380 155 KWQVTA 160 (382)
T ss_pred ceEEEE
Confidence 55543
No 415
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=52.22 E-value=1.5e+02 Score=27.25 Aligned_cols=84 Identities=13% Similarity=0.119 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH-HhCCCeEEEE---cCH
Q 024871 91 IMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR-KAGISKIEIT---NDP 166 (261)
Q Consensus 91 ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~-~~g~~~i~~~---~d~ 166 (261)
.++-+..+.+..+--.|.+|++.|..+.+.+..+.++..+|.+++.++.. ++-.+.++ +.|...+.-+ ++.
T Consensus 143 ~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~-----~~k~~~~~~~lGa~~vi~~~~~~~~ 217 (348)
T PLN03154 143 GFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGS-----SQKVDLLKNKLGFDEAFNYKEEPDL 217 (348)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCC-----HHHHHHHHHhcCCCEEEECCCcccH
Confidence 33333333333223468899999987889999999999999987665432 23345555 5674322212 144
Q ss_pred HHHhC-----CCCEEEEe
Q 024871 167 KEVVQ-----GADVVYSD 179 (261)
Q Consensus 167 ~~a~~-----~aDviy~~ 179 (261)
.+.++ ++|+++-.
T Consensus 218 ~~~i~~~~~~gvD~v~d~ 235 (348)
T PLN03154 218 DAALKRYFPEGIDIYFDN 235 (348)
T ss_pred HHHHHHHCCCCcEEEEEC
Confidence 44432 57888743
No 416
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=52.20 E-value=85 Score=29.68 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=51.9
Q ss_pred CCCChhHHHHH-----HHHHHHHhCCCC-CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC
Q 024871 84 DYNHPCQIMAD-----ALTIIEHVGRLE-GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI 157 (261)
Q Consensus 84 ~~~HPtQ~L~D-----l~Ti~e~~g~l~-~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~ 157 (261)
...+||-..=| ++.-.+..|.+. |.+..+..-.+|...|++..++.+|++++++-|.. .+..-++.++.+|
T Consensus 81 E~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~--~~~~k~~~lr~~G- 157 (368)
T PLN02556 81 EMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSY--TSLERRVTMRAFG- 157 (368)
T ss_pred cccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCC--CCHHHHHHHHHcC-
Confidence 34567765444 222233445443 44444445568999999999999999999999976 4445566778888
Q ss_pred CeEEEEc
Q 024871 158 SKIEITN 164 (261)
Q Consensus 158 ~~i~~~~ 164 (261)
+.+..++
T Consensus 158 A~Vi~~~ 164 (368)
T PLN02556 158 AELVLTD 164 (368)
T ss_pred CEEEEEC
Confidence 5777764
No 417
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=52.08 E-value=58 Score=27.74 Aligned_cols=101 Identities=18% Similarity=0.028 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhh-hccEEEEeeCCcchH-HHHhhhCCCcEEeCCCCCC-Chh
Q 024871 13 RVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCR-YNDIIMARVFGHQDI-LDLAKFATVPVINGLTDYN-HPC 89 (261)
Q Consensus 13 R~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~-~~D~iv~R~~~~~~~-~~~a~~~~vPVINa~~~~~-HPt 89 (261)
...++.++.++|..++.+...... -+...+..+.+.+ -+|.+++-....... .......++|||--+.... .-.
T Consensus 18 ~~gi~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~ipvv~~~~~~~~~~~ 94 (264)
T cd01574 18 LAAIESAAREAGYAVTLSMLAEAD---EEALRAAVRRLLAQRVDGVIVNAPLDDADAALAAAPADVPVVFVDGSPSPRVS 94 (264)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCc---hHHHHHHHHHHHhcCCCEEEEeCCCCChHHHHHHHhcCCCEEEEeccCCCCCC
Confidence 556888999999998877543221 1223344544444 489988855433322 2223456799877543211 111
Q ss_pred HHHHHHHHH----HHHhCCCCCcEEEEEcCC
Q 024871 90 QIMADALTI----IEHVGRLEGTKVVYVGDG 116 (261)
Q Consensus 90 Q~L~Dl~Ti----~e~~g~l~~~~i~~vGd~ 116 (261)
..-.|-+.. -+++......+|+++++.
T Consensus 95 ~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~ 125 (264)
T cd01574 95 TVSVDQEGGARLATEHLLELGHRTIAHVAGP 125 (264)
T ss_pred EEEeCcHHHHHHHHHHHHHCCCCEEEEEecC
Confidence 222332211 222222335799999754
No 418
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=52.05 E-value=84 Score=26.68 Aligned_cols=65 Identities=12% Similarity=-0.002 Sum_probs=38.7
Q ss_pred hHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhh-hccEEEEeeCCcc-hHHHHhhhCCCcEEeC
Q 024871 12 TRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCR-YNDIIMARVFGHQ-DILDLAKFATVPVING 81 (261)
Q Consensus 12 TR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~-~~D~iv~R~~~~~-~~~~~a~~~~vPVINa 81 (261)
-...++.|+++.|.++..++.... ..+ ..+..+.+.+ -+|+|++-..... ...+.. ..++|||-.
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~-~~~---~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~-~~~ipvv~~ 83 (267)
T cd06284 17 ILKGIEDEAREAGYGVLLGDTRSD-PER---EQEYLDLLRRKQADGIILLDGSLPPTALTAL-AKLPPIVQA 83 (267)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCC-hHH---HHHHHHHHHHcCCCEEEEecCCCCHHHHHHH-hcCCCEEEE
Confidence 456788899999999988765422 122 2333444444 4898888543322 223333 348998754
No 419
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=51.97 E-value=49 Score=25.78 Aligned_cols=60 Identities=18% Similarity=0.114 Sum_probs=37.2
Q ss_pred cEEEEEcCC---CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDG---NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~---~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
++||+||.. .+..+-.+..+...|.+++.+.|+.-++ ..+..+.+++|.-...|++..-.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-------------~G~~~y~sl~e~p~~iDlavv~~ 63 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-------------LGIKCYPSLAEIPEPIDLAVVCV 63 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-------------TTEE-BSSGGGCSST-SEEEE-S
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-------------CcEEeeccccCCCCCCCEEEEEc
Confidence 589999963 3355555555555889999999987333 13567889888448899987753
No 420
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=51.85 E-value=71 Score=29.91 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=41.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEE-EEcC---HHHHhCCCCEEEE
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIE-ITND---PKEVVQGADVVYS 178 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~-~~~d---~~~a~~~aDviy~ 178 (261)
.++|+++|. +....-++..+..+|.+++++.|..-.|...+ +.+ .+. -..| +.+.++.+|+|..
T Consensus 2 ~~~igilG~-Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~---ad~----~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGG-GQLGRMLALAAAPLGYKVIVLDPDPDSPAAQV---ADE----VIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchhHh---Cce----EEecCCCCHHHHHHHHhcCCEEEe
Confidence 368999998 46777888888999999999988654443221 111 111 0234 4556788898754
No 421
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=51.69 E-value=86 Score=27.32 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=26.1
Q ss_pred CCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCC
Q 024871 171 QGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERG 225 (261)
Q Consensus 171 ~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg 225 (261)
.+.|+|..-.|.+ .++++.++..+...+=.|| ||.+.|
T Consensus 78 ~~~dlvvLAGyMr-----------------IL~~~fl~~~~grIlNIHPSLLP~f~G 117 (200)
T COG0299 78 YGPDLVVLAGYMR-----------------ILGPEFLSRFEGRILNIHPSLLPAFPG 117 (200)
T ss_pred cCCCEEEEcchHH-----------------HcCHHHHHHhhcceEecCcccccCCCC
Confidence 3578888876543 2667777776666677888 888654
No 422
>PRK06381 threonine synthase; Validated
Probab=51.63 E-value=49 Score=30.24 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=38.5
Q ss_pred EEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEc
Q 024871 111 VYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITN 164 (261)
Q Consensus 111 ~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~ 164 (261)
.+.+-.+|...|++..++.+|++++++-|... ++..++.++.+| +.+..+.
T Consensus 66 lv~aSsGN~g~alA~~aa~~G~~~~ivvp~~~--~~~~~~~l~~~G-A~V~~~~ 116 (319)
T PRK06381 66 ITVGTCGNYGASIAYFARLYGLKAVIFIPRSY--SNSRVKEMEKYG-AEIIYVD 116 (319)
T ss_pred EEEeCCcHHHHHHHHHHHHcCCcEEEEECCCC--CHHHHHHHHHcC-CEEEEcC
Confidence 34454579999999999999999999889763 445566778888 5666554
No 423
>PRK12937 short chain dehydrogenase; Provisional
Probab=51.60 E-value=66 Score=27.24 Aligned_cols=35 Identities=11% Similarity=0.065 Sum_probs=29.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCAC 138 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~ 138 (261)
.++++++.+.|..+.+..+++..+..-|.+++++.
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~ 36 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNY 36 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEec
Confidence 46789999999988899999998888898887654
No 424
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=51.41 E-value=81 Score=28.74 Aligned_cols=63 Identities=8% Similarity=0.067 Sum_probs=43.7
Q ss_pred HHHHHHHhC---CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC
Q 024871 95 ALTIIEHVG---RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI 157 (261)
Q Consensus 95 l~Ti~e~~g---~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~ 157 (261)
|..++|+|. .|+|.+|+.+=-..-=.--+++.+...|.+|..++-+-+...+++..-+.+.|+
T Consensus 28 L~~lr~~~~~~kPl~G~rIa~cLHle~kTA~L~~tL~a~GAeV~~~~sNplSTQDdvaAAL~~~Gi 93 (268)
T PF05221_consen 28 LMALRERFEAEKPLKGARIAGCLHLEAKTAVLAETLKALGAEVRWTGSNPLSTQDDVAAALAEEGI 93 (268)
T ss_dssp HHHHHHHHTTT-TTTTEEEEEES--SHHHHHHHHHHHHTTEEEEEEESSTTT--HHHHHHHHHTTE
T ss_pred HHHHHHHhhccCCCCCCEEEEEEechHHHHHHHHHHHHcCCeEEEecCCCcccchHHHHHhccCCc
Confidence 567777775 499999987544333233477788889999999887778888887766666663
No 425
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=51.25 E-value=1.2e+02 Score=27.57 Aligned_cols=69 Identities=12% Similarity=0.076 Sum_probs=40.8
Q ss_pred EEEEcCCCchHHHHHHHHhcCC--cEEEEeCCCCCCCCHHHHHHHH--Hh-CCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 110 VVYVGDGNNIVHSWLLMASVIP--FHFVCACPKGFEPDKETVEKAR--KA-GISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 110 i~~vGd~~~v~~S~~~~~~~~g--~~~~~~~P~~~~~~~~~~~~~~--~~-g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
|++||- ++|.-+.+..+...| -+++++-+..-.......+.-. .. +...+..+.| .+.+++||+|+...
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIita 74 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITA 74 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcC
Confidence 568886 568888887776667 4688876643222222222111 11 1123444455 56999999999864
No 426
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=51.25 E-value=78 Score=29.36 Aligned_cols=66 Identities=21% Similarity=0.171 Sum_probs=43.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC---------C---CeEEEEcCHHHHhCCCCE
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG---------I---SKIEITNDPKEVVQGADV 175 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g---------~---~~i~~~~d~~~a~~~aDv 175 (261)
.||+++|- ++...+++..++.-| ++++... .++..+..++.+ . ..+..++|++++++++|+
T Consensus 8 mkI~IiGa-Ga~G~alA~~La~~g-~v~l~~~-----~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDl 80 (341)
T PRK12439 8 PKVVVLGG-GSWGTTVASICARRG-PTLQWVR-----SAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADV 80 (341)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCC-CEEEEeC-----CHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCE
Confidence 68999996 778888877777766 4443332 223333333221 0 246678899999999998
Q ss_pred EEEec
Q 024871 176 VYSDV 180 (261)
Q Consensus 176 iy~~~ 180 (261)
|+...
T Consensus 81 Vilav 85 (341)
T PRK12439 81 VVMGV 85 (341)
T ss_pred EEEEe
Confidence 88763
No 427
>PLN00011 cysteine synthase
Probab=51.23 E-value=1e+02 Score=28.44 Aligned_cols=53 Identities=11% Similarity=0.206 Sum_probs=40.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEc
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITN 164 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~ 164 (261)
.+|+ ..-.+|.+.|++..++.+|++++++.|+.. ++..++..+.+| +.+..++
T Consensus 70 ~~vv-~aSsGN~g~alA~~a~~~G~~~~ivvp~~~--~~~k~~~i~~~G-A~V~~~~ 122 (323)
T PLN00011 70 STLI-EATAGNTGIGLACIGAARGYKVILVMPSTM--SLERRIILRALG-AEVHLTD 122 (323)
T ss_pred cEEE-EeCCChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHHHHHcC-CEEEEEC
Confidence 3444 344589999999999999999999999874 355667788888 5777655
No 428
>PLN02206 UDP-glucuronate decarboxylase
Probab=51.15 E-value=61 Score=31.34 Aligned_cols=75 Identities=11% Similarity=0.061 Sum_probs=45.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEE-EcC-HHHHhCCCCEEEEeccc
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEI-TND-PKEVVQGADVVYSDVWA 182 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~-~~d-~~~a~~~aDviy~~~w~ 182 (261)
-+++||.+.|-.+.+...++..+..-|.+++.+.-..-...+..... .....+++ ..| .+.++.++|+||-..|.
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~---~~~~~~~~i~~D~~~~~l~~~D~ViHlAa~ 193 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHH---FSNPNFELIRHDVVEPILLEVDQIYHLACP 193 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhh---ccCCceEEEECCccChhhcCCCEEEEeeee
Confidence 46799999999888998888877777888776531111111111111 11111222 233 45577889999998764
No 429
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=51.06 E-value=28 Score=31.48 Aligned_cols=88 Identities=20% Similarity=0.262 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhC-CCCCcEEEEEcCCC---chHHHHHHHHhcCCcE-------EEEeCCCCC------CCCHHHHHHHH
Q 024871 91 IMADALTIIEHVG-RLEGTKVVYVGDGN---NIVHSWLLMASVIPFH-------FVCACPKGF------EPDKETVEKAR 153 (261)
Q Consensus 91 ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~---~v~~S~~~~~~~~g~~-------~~~~~P~~~------~~~~~~~~~~~ 153 (261)
+|+=++.-.+..| +|+..||+++|-+. .+++-++.++..-|+. ++++--+|+ .+++....+++
T Consensus 8 ~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~ 87 (255)
T PF03949_consen 8 VLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFAR 87 (255)
T ss_dssp HHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHB
T ss_pred HHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhc
Confidence 4555666656555 59999999999863 3666666665555652 444433332 23333344444
Q ss_pred HhCCCeEEEEcCHHHHhCCC--CEEEEec
Q 024871 154 KAGISKIEITNDPKEVVQGA--DVVYSDV 180 (261)
Q Consensus 154 ~~g~~~i~~~~d~~~a~~~a--Dviy~~~ 180 (261)
+.. ......++.|+++++ ||++-.+
T Consensus 88 ~~~--~~~~~~~L~eav~~~kPtvLIG~S 114 (255)
T PF03949_consen 88 KTN--PEKDWGSLLEAVKGAKPTVLIGLS 114 (255)
T ss_dssp SSS--TTT--SSHHHHHHCH--SEEEECS
T ss_pred cCc--ccccccCHHHHHHhcCCCEEEEec
Confidence 432 111126899999999 9999985
No 430
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=50.86 E-value=70 Score=29.14 Aligned_cols=148 Identities=17% Similarity=0.132 Sum_probs=75.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHhc---CCcE----EEEe-CCCCCCCCHHHHHHHHHhC---CCeEEEEcCHHHHhCCCCE
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASV---IPFH----FVCA-CPKGFEPDKETVEKARKAG---ISKIEITNDPKEVVQGADV 175 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~---~g~~----~~~~-~P~~~~~~~~~~~~~~~~g---~~~i~~~~d~~~a~~~aDv 175 (261)
-++|+.-|..+++.+|++...+. ||.+ +++. .|+-...-+.+.=+++... ...+..++|..++.+|.|+
T Consensus 4 pirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~PlL~~Vvattd~~~afkdv~~ 83 (332)
T KOG1496|consen 4 PIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALPLLKGVVATTDEVEAFKDVDV 83 (332)
T ss_pred ceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhhHHHhhhcccChhhhhccCcE
Confidence 47899999999999999876543 4432 2211 1222221122211233221 1345668899999999999
Q ss_pred EEEec-ccCcchhHHHHHHHhhhcCCcccHHHHH-hcCCCcEEeeC-CCCCCC----cccccccccCCCcchHhHHhccH
Q 024871 176 VYSDV-WASMGQKEEAAYRKQAFQGFQVDEFLMK-LAGPKAYFMHC-LPAERG----VEVTEGVIEAPYSIVFPQAENRM 248 (261)
Q Consensus 176 iy~~~-w~~~~~~~~~~~~~~~~~~y~v~~~~~~-~a~~~~~~mH~-lP~~rg----~Ev~~~v~~~~~s~~~~Qa~N~l 248 (261)
.++-. -++..-.||++-....-.=|.-..+.|+ .++++++++-- =|+|-+ .+-..++-....+..-+=-+||-
T Consensus 84 ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~k~ApsIP~kNfs~lTRLDhNRA 163 (332)
T KOG1496|consen 84 AILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILKKFAPSIPEKNFSALTRLDHNRA 163 (332)
T ss_pred EEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHhhhCCCCchhcchhhhhhchhhH
Confidence 77753 2332233332211111112444444444 46888887654 355432 13333333333444445555665
Q ss_pred HHHHHH
Q 024871 249 HAQNAI 254 (261)
Q Consensus 249 ~~r~Al 254 (261)
..|-|+
T Consensus 164 ~~QlA~ 169 (332)
T KOG1496|consen 164 LAQLAL 169 (332)
T ss_pred HHHHHH
Confidence 555544
No 431
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.79 E-value=81 Score=30.81 Aligned_cols=69 Identities=13% Similarity=0.130 Sum_probs=46.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+.|++|+++| .+.+..|.+..+...|.++++.-.+ +...+.+++.|. .+....+..+.++++|+|+.-+
T Consensus 10 ~~~~~v~V~G-~G~sG~aa~~~L~~~G~~v~~~D~~-----~~~~~~l~~~g~-~~~~~~~~~~~l~~~D~VV~Sp 78 (488)
T PRK03369 10 LPGAPVLVAG-AGVTGRAVLAALTRFGARPTVCDDD-----PDALRPHAERGV-ATVSTSDAVQQIADYALVVTSP 78 (488)
T ss_pred cCCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEEcCC-----HHHHHHHHhCCC-EEEcCcchHhHhhcCCEEEECC
Confidence 4688999999 4678888888888899988875421 122344556663 3433333455688999988854
No 432
>PRK08198 threonine dehydratase; Provisional
Probab=50.59 E-value=50 Score=31.34 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=48.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEc-CHHHH-------hCCCCEEEE
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITN-DPKEV-------VQGADVVYS 178 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~-d~~~a-------~~~aDviy~ 178 (261)
+.+|+-.+ .+|.+.+++..++.+|++.+++-|+.. +..-++.++.+| +.+..+. +.+++ .++-+..|.
T Consensus 70 ~~~vv~aS-sGN~g~alA~~a~~~G~~~~iv~p~~~--~~~k~~~~~~~G-A~Vi~~~~~~~~~~~~a~~~~~~~g~~~~ 145 (404)
T PRK08198 70 ARGVVAAS-AGNHAQGVAYAASLLGIKATIVMPETA--PLSKVKATRSYG-AEVVLHGDVYDEALAKAQELAEETGATFV 145 (404)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHhCC-CEEEEECCCHHHHHHHHHHHHHhcCCEec
Confidence 45555555 488999999999999999999999874 344456678888 5677654 33433 233455666
Q ss_pred ecc
Q 024871 179 DVW 181 (261)
Q Consensus 179 ~~w 181 (261)
+.+
T Consensus 146 ~~~ 148 (404)
T PRK08198 146 HPF 148 (404)
T ss_pred CCC
Confidence 654
No 433
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=50.52 E-value=87 Score=28.38 Aligned_cols=167 Identities=14% Similarity=0.151 Sum_probs=84.5
Q ss_pred ChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh-ccEEEEeeCCcchHHHH-------hhhCC-C-cE
Q 024871 9 SMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY-NDIIMARVFGHQDILDL-------AKFAT-V-PV 78 (261)
Q Consensus 9 StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~-~D~iv~R~~~~~~~~~~-------a~~~~-v-PV 78 (261)
..+.-.=+..++..+|....|..-.. ..|.+.+..+.+... ...+-+=.+--..+..+ |+..+ | -|
T Consensus 21 hS~SP~ihn~~f~~~gl~~~Y~~~~v----~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~ld~~~~~A~~iGavNTi 96 (289)
T PRK12548 21 HSGSPAMYNYSFQKAGLDYAYLAFDI----PVDKVPDAIKAIKTFNMRGANVTMPCKSEAAKYMDELSPAARIIGAVNTI 96 (289)
T ss_pred cccCHHHHHHHHHHcCCCEEEEEEec----CHHHHHHHHHHHHHCCCCEEEECccCHHHHHHHhhcCCHHHHHhCceeEE
Confidence 44455556778889998877753221 135677777766543 34444433332222222 22111 1 13
Q ss_pred EeCCC-CCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcE-EEEeCCCC--CCCCHHHHHHHHH
Q 024871 79 INGLT-DYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFH-FVCACPKG--FEPDKETVEKARK 154 (261)
Q Consensus 79 INa~~-~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~-~~~~~P~~--~~~~~~~~~~~~~ 154 (261)
++-++ -..|=|-...=+..+++....++|+++.++|- +.++++.+..+...|.. ++++.-.. .+-.+++.+...+
T Consensus 97 ~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~ 175 (289)
T PRK12548 97 VNDDGKLTGHITDGLGFVRNLREHGVDVKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQ 175 (289)
T ss_pred EeECCEEEEEecCHHHHHHHHHhcCCCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhh
Confidence 33221 11222222222222333333588999999998 58899988888888975 77765321 1112233332322
Q ss_pred hCC-CeEEEE--c---CHHHHhCCCCEEEEec
Q 024871 155 AGI-SKIEIT--N---DPKEVVQGADVVYSDV 180 (261)
Q Consensus 155 ~g~-~~i~~~--~---d~~~a~~~aDviy~~~ 180 (261)
.+. ..+... + ++++.++.+|+|+..+
T Consensus 176 ~~~~~~~~~~d~~~~~~~~~~~~~~DilINaT 207 (289)
T PRK12548 176 EVPECIVNVYDLNDTEKLKAEIASSDILVNAT 207 (289)
T ss_pred cCCCceeEEechhhhhHHHhhhccCCEEEEeC
Confidence 221 112111 1 2345677889988765
No 434
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=49.98 E-value=35 Score=33.13 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=40.6
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEc
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITN 164 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~ 164 (261)
+-++++-.+|...|++..++.+|++++++-|++ .++.-++.++.+| +.+..+.
T Consensus 153 ~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~--a~~~K~~~ir~~G-AeVv~~~ 205 (431)
T TIGR02035 153 YSIAVGSTGNLGLSIGIISAALGFQVTVHMSAD--AKQWKKDKLRSKG-VTVVEYE 205 (431)
T ss_pred ceEEEECccHHHHHHHHHHHHcCCCEEEEECCC--CCHHHHHHHHHcC-CEEEEEC
Confidence 345556668999999999999999999999987 3444556788888 5666544
No 435
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=49.84 E-value=73 Score=28.24 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=39.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCC----cEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIP----FHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g----~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
..||+++| .+++..|++..+..-+ -+++...|..- +.+ +....+..++++++|+|+.-.
T Consensus 3 ~mkI~iIG-~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~-----------~~~---~~~~~~~~~~~~~~D~Vilav 65 (260)
T PTZ00431 3 NIRVGFIG-LGKMGSALAYGIENSNIIGKENIYYHTPSKK-----------NTP---FVYLQSNEELAKTCDIIVLAV 65 (260)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHhCCCCCcceEEEECCChh-----------cCC---eEEeCChHHHHHhCCEEEEEe
Confidence 46899999 5888888887765433 24666555321 012 234667888899999988763
No 436
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=49.73 E-value=1.3e+02 Score=29.76 Aligned_cols=120 Identities=21% Similarity=0.273 Sum_probs=71.4
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHH----HHHHHhhh----ccEEEEeeCCcch--HHHHhhhCCCcEEeCC
Q 024871 13 RVSFETGFSLLGGHAIYLGPDDIQMGKREETRD----AARVLCRY----NDIIMARVFGHQD--ILDLAKFATVPVINGL 82 (261)
Q Consensus 13 R~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~D----t~~~ls~~----~D~iv~R~~~~~~--~~~~a~~~~vPVINa~ 82 (261)
-|+|| .++|...+|.+ .|.++.+ .++.|... .|+| +=.++++. ...+|+.+++|+..+.
T Consensus 247 ~C~FE---------~vYfarpds~i-~g~~v~~~R~~lg~~La~~~~~~~D~V-vpVPnqa~~lA~~la~~lgip~~~~l 315 (484)
T PRK07272 247 ICSME---------YIYFARPDSTI-HGVNVHTARKRMGKRLAQEFPHDADIV-IGVPNSSLSAASGYAEESGLPYEMGL 315 (484)
T ss_pred ccchh---------hhhhcCCcccc-CCEEHHHHHHHHHHHHHhhcCCCCCEE-EEecHHHHHHHHHHHHHHCCCcccCe
Confidence 48887 24554333333 3444444 44444332 3655 45676654 4678888999964332
Q ss_pred ------C-CCCChhHHHHHHHHHHHHh----CCCCCcEEEEEcCC---CchHHHHHHHHhcCC---cEEEEeCCCCCCC
Q 024871 83 ------T-DYNHPCQIMADALTIIEHV----GRLEGTKVVYVGDG---NNIVHSWLLMASVIP---FHFVCACPKGFEP 144 (261)
Q Consensus 83 ------~-~~~HPtQ~L~Dl~Ti~e~~----g~l~~~~i~~vGd~---~~v~~S~~~~~~~~g---~~~~~~~P~~~~~ 144 (261)
+ ....|+|..-+- .++..| ..++|++|++|=|. +.+.+..+.++...| +++.+++|+-..|
T Consensus 316 vk~~~~~rt~~~~~q~~R~~-~vr~~f~~~~~~~~gk~vllVDDvittG~T~~~~~~~L~~~Ga~~v~~~~~~p~~~~~ 393 (484)
T PRK07272 316 VKNQYVARTFIQPTQELREQ-GVRMKLSAVSGVVKGKRVVMVDDSIVRGTTSRRIVQLLKEAGAKEVHVAIASPELKYP 393 (484)
T ss_pred EEEccCCccccCCCHHHHHH-HHhhCccccccccCCCEEEEEccccCchHHHHHHHHHHHhcCCcEEEEEEeCCccccC
Confidence 1 223488865431 222233 34889999999995 568888888877776 4677888865444
No 437
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=49.65 E-value=50 Score=31.69 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=50.1
Q ss_pred ccEEEEeeCCcch-------HHHHhhhCCCcEEeCCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHH
Q 024871 54 NDIIMARVFGHQD-------ILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLM 126 (261)
Q Consensus 54 ~D~iv~R~~~~~~-------~~~~a~~~~vPVINa~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~ 126 (261)
+|+|.+|.-+.+. +.+.++...+|+|=.++ |--.+.+...-++|.|..+-+-...=......+
T Consensus 70 ~D~Ialr~~S~DPae~fa~~vk~V~~a~~~PLIL~~~----------D~evl~aale~~~~~kpLL~aAt~eNyk~m~~l 139 (386)
T PF03599_consen 70 ADMIALRLESGDPAEEFAKAVKKVAEAVDVPLILCGC----------DPEVLKAALEACAGKKPLLYAATEENYKAMAAL 139 (386)
T ss_dssp -SEEEEE-GGGSTHHHHHHHHHHHHHC-SSEEEEESS----------HHHHHHHHHHHTTTS--EEEEEBTTTHHHHHHH
T ss_pred ccEEEEEecCCChHHHHHHHHHHHHHhcCCCEEEEeC----------CHHHHHHHHHHhCcCCcEEeEcCHHHHHHHHHH
Confidence 6888888765442 34445567888776544 666666555556677766555322234445555
Q ss_pred HhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC
Q 024871 127 ASVIPFHFVCACPKGFEPDKETVEKARKAGI 157 (261)
Q Consensus 127 ~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~ 157 (261)
+..+|..+..-+|.++..-.++..++.+.|.
T Consensus 140 A~~y~~pl~v~sp~Dln~lk~Ln~~l~~~Gv 170 (386)
T PF03599_consen 140 AKEYGHPLIVSSPIDLNLLKQLNIKLTELGV 170 (386)
T ss_dssp HHHCT-EEEEE-SSCHHHHHHHHHHHHTTT-
T ss_pred HHHcCCeEEEEecccHHHHHHHHHHHHhcCc
Confidence 6666777777777665544444444444453
No 438
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=49.38 E-value=23 Score=34.73 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=28.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACP 139 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P 139 (261)
.|+|+|++++|| .....|++..+.-+|++++.++-
T Consensus 311 ~L~GKrvai~Gd-p~~~i~LarfL~elGmevV~vgt 345 (457)
T CHL00073 311 LVRGKSVFFMGD-NLLEISLARFLIRCGMIVYEIGI 345 (457)
T ss_pred HHCCCEEEEECC-CcHHHHHHHHHHHCCCEEEEEEe
Confidence 379999999998 45677888888889998876653
No 439
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=48.93 E-value=45 Score=32.13 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=37.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCC---CCCCHHHHHHHHHhCC
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKG---FEPDKETVEKARKAGI 157 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~---~~~~~~~~~~~~~~g~ 157 (261)
..|++|+++|. ++++...+..+..+|.+++++.... +......++.+++.|+
T Consensus 270 ~~gk~VvVIGg-G~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV 324 (449)
T TIGR01316 270 YAGKSVVVIGG-GNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGV 324 (449)
T ss_pred cCCCeEEEECC-CHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCC
Confidence 46899999996 6788888888889999888887543 2223444456777763
No 440
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=48.89 E-value=62 Score=29.06 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=40.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcC
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITND 165 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d 165 (261)
.+|+-.+ .+|..+|++..++.+|++++++-|++. +++.++.++..| +.+..++.
T Consensus 66 ~~iv~~s-sGN~g~alA~~a~~~G~~~~ivvp~~~--~~~k~~~l~~~G-a~vi~~~~ 119 (304)
T cd01562 66 KGVVAAS-AGNHAQGVAYAAKLLGIPATIVMPETA--PAAKVDATRAYG-AEVVLYGE 119 (304)
T ss_pred CcEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHcC-CEEEEeCC
Confidence 4455554 489999999999999999998889775 344566778888 56665543
No 441
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.79 E-value=93 Score=30.22 Aligned_cols=72 Identities=14% Similarity=-0.015 Sum_probs=46.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
++|++|+++|= +....|.+..+...|.++++.-.+.....++. +.+++ ++..+...++ .+.+.++|+|+..+
T Consensus 6 ~~~~~v~v~G~-G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~-~~l~~-~~~~~~~~~~-~~~~~~~d~vV~Sp 77 (468)
T PRK04690 6 LEGRRVALWGW-GREGRAAYRALRAHLPAQALTLFCNAVEAREV-GALAD-AALLVETEAS-AQRLAAFDVVVKSP 77 (468)
T ss_pred cCCCEEEEEcc-chhhHHHHHHHHHcCCEEEEEcCCCcccchHH-HHHhh-cCEEEeCCCC-hHHccCCCEEEECC
Confidence 56899999994 67888899999999999887654433222221 22333 3222322333 45678899988864
No 442
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=48.59 E-value=79 Score=27.78 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=45.4
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe-ccc
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD-VWA 182 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~-~w~ 182 (261)
+++++| .+|+.-.+....++.|.++++.+-++ ++.....++..+ ..++ --+.++|.+.+|||... +|.
T Consensus 3 ~~~i~G-tGniG~alA~~~a~ag~eV~igs~r~---~~~~~a~a~~l~-~~i~-~~~~~dA~~~aDVVvLAVP~~ 71 (211)
T COG2085 3 IIAIIG-TGNIGSALALRLAKAGHEVIIGSSRG---PKALAAAAAALG-PLIT-GGSNEDAAALADVVVLAVPFE 71 (211)
T ss_pred EEEEec-cChHHHHHHHHHHhCCCeEEEecCCC---hhHHHHHHHhhc-cccc-cCChHHHHhcCCEEEEeccHH
Confidence 455555 58899999999999999999886433 222222233444 2333 33568899999998886 353
No 443
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=48.56 E-value=87 Score=31.17 Aligned_cols=120 Identities=19% Similarity=0.272 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHh----hh----ccEEEEeeCCcch--HHHHhhhCCCcEEe
Q 024871 11 RTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLC----RY----NDIIMARVFGHQD--ILDLAKFATVPVIN 80 (261)
Q Consensus 11 RTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls----~~----~D~iv~R~~~~~~--~~~~a~~~~vPVIN 80 (261)
+..|+|| .+||...+|.+ .|.++.++=+-++ +- +| +|+-.+.++. ...+|+.+++|.-.
T Consensus 262 ~~~C~fE---------~vYfarpdS~~-~g~~v~~~R~~~G~~La~~~~~~~D-~VvpVP~sG~~~A~g~a~~~gip~~~ 330 (510)
T PRK07847 262 PKGCVFE---------YVYLARPDTTI-AGRSVHAARVEIGRRLAREHPVEAD-LVIPVPESGTPAAVGYAQESGIPFGQ 330 (510)
T ss_pred CCCCeEE---------EEEecCCccee-CCeEHHHHHHHHHHHHHhhCCCCCe-EEEeccCchHHHHHHHHHHhCCChhh
Confidence 3357776 35664433433 4777777444333 32 24 4566777654 56888999999655
Q ss_pred CCC-------CCCChhHHHHHH-HHHHH-HhC-CCCCcEEEEEcCC---CchHHHHHHHHhcCC---cEEEEeCCCC
Q 024871 81 GLT-------DYNHPCQIMADA-LTIIE-HVG-RLEGTKVVYVGDG---NNIVHSWLLMASVIP---FHFVCACPKG 141 (261)
Q Consensus 81 a~~-------~~~HPtQ~L~Dl-~Ti~e-~~g-~l~~~~i~~vGd~---~~v~~S~~~~~~~~g---~~~~~~~P~~ 141 (261)
+.- +...|+|.+-+. ..++. .+. .++|++|.+|=|. +.+.+..+..+...| +++.++|||-
T Consensus 331 ~l~kn~~~grtfi~~~q~~r~~~~r~k~~~~~~~~~gk~vllVDD~ittG~T~~~~~~~L~~~ga~~v~~ri~sPpi 407 (510)
T PRK07847 331 GLVKNAYVGRTFIQPSQTIRQLGIRLKLNPLREVIRGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRISSPPV 407 (510)
T ss_pred ceEeecccccCccCcchhhhhhceeeecCccccccCCCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEECCCCc
Confidence 422 335699998763 22210 012 3799999999995 568888887777766 5788899974
No 444
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=48.13 E-value=1.5e+02 Score=27.05 Aligned_cols=73 Identities=12% Similarity=0.176 Sum_probs=46.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEE-cCHHH--HhCCCCEEEEec
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEIT-NDPKE--VVQGADVVYSDV 180 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~-~d~~~--a~~~aDviy~~~ 180 (261)
..|.+|++.|- +.+.+..+.++...|.+++.+...+ +.++-++.+++.|...+... ++.++ ...++|+++-..
T Consensus 171 ~~g~~vlI~G~-G~vG~~a~q~ak~~G~~vi~~~~~~--~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~ 246 (355)
T cd08230 171 WNPRRALVLGA-GPIGLLAALLLRLRGFEVYVLNRRD--PPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEAT 246 (355)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecCC--CCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECc
Confidence 47889999984 7788888888888899877766532 23445567778874322111 11111 234578888765
No 445
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=48.08 E-value=70 Score=29.21 Aligned_cols=74 Identities=22% Similarity=0.341 Sum_probs=30.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCC--cEEEEeCCCCCCCCHHHHHHHHHh-----C-CCeEE-EEcCHHH---HhCCCCE
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIP--FHFVCACPKGFEPDKETVEKARKA-----G-ISKIE-ITNDPKE---VVQGADV 175 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g--~~~~~~~P~~~~~~~~~~~~~~~~-----g-~~~i~-~~~d~~~---a~~~aDv 175 (261)
.||+|||- +...-|.+.++...+ ..|. ++..+++-.+.+++. | ...+. ++.|..+ .+++.|+
T Consensus 122 ~rVaFIGS-GPLPlT~i~la~~~~~~~~v~-----~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~Dv 195 (276)
T PF03059_consen 122 SRVAFIGS-GPLPLTSIVLAKQHGPGARVH-----NIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDV 195 (276)
T ss_dssp -EEEEE----SS-HHHHHHH--HTT--EEE-----EEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SE
T ss_pred ceEEEEcC-CCcchHHHHHHHHhCCCCeEE-----EEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCE
Confidence 59999996 557777777766544 3333 344555555544321 1 12333 3445433 3678899
Q ss_pred EEEecccCcchh
Q 024871 176 VYSDVWASMGQK 187 (261)
Q Consensus 176 iy~~~w~~~~~~ 187 (261)
||.-.-+.|.++
T Consensus 196 V~lAalVg~~~e 207 (276)
T PF03059_consen 196 VFLAALVGMDAE 207 (276)
T ss_dssp EEE-TT-S----
T ss_pred EEEhhhcccccc
Confidence 999876554443
No 446
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=47.55 E-value=75 Score=27.18 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=28.3
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCC
Q 024871 103 GRLEGTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKG 141 (261)
Q Consensus 103 g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~ 141 (261)
.+|++.||+++|- +.+....+..++..|+ +++++-+..
T Consensus 17 ~kl~~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 17 QRLLNSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred HHhcCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 3588999999995 5566666677777786 787777653
No 447
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=47.48 E-value=52 Score=29.47 Aligned_cols=70 Identities=17% Similarity=0.264 Sum_probs=48.9
Q ss_pred Eeec------cCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh-ccEEEEeeCC----cchHHHH
Q 024871 2 SMIF------AKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY-NDIIMARVFG----HQDILDL 70 (261)
Q Consensus 2 ~~lF------~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~-~D~iv~R~~~----~~~~~~~ 70 (261)
+.+| .+.|.++--.+..|...+|-.+..+++.. +..+.+... .|+++.|... ...+..+
T Consensus 8 ~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~----------~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~ 77 (304)
T PRK01372 8 AVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGE----------DIAAQLKELGFDRVFNALHGRGGEDGTIQGL 77 (304)
T ss_pred EEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCc----------chHHHhccCCCCEEEEecCCCCCCccHHHHH
Confidence 5666 56677887889999999999998886542 122223222 5999998532 3346677
Q ss_pred hhhCCCcEEeC
Q 024871 71 AKFATVPVING 81 (261)
Q Consensus 71 a~~~~vPVINa 81 (261)
.+..++|+++.
T Consensus 78 le~~gi~~~g~ 88 (304)
T PRK01372 78 LELLGIPYTGS 88 (304)
T ss_pred HHHcCCCccCC
Confidence 78889999874
No 448
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=47.32 E-value=34 Score=30.56 Aligned_cols=74 Identities=20% Similarity=0.306 Sum_probs=42.1
Q ss_pred CCcEEEEEcCCC-------chHHHHHHHHhcCCcEEEEeCC-CCC--CCCHHHHHHHHH-----hCCCeEEEEcCHHHHh
Q 024871 106 EGTKVVYVGDGN-------NIVHSWLLMASVIPFHFVCACP-KGF--EPDKETVEKARK-----AGISKIEITNDPKEVV 170 (261)
Q Consensus 106 ~~~~i~~vGd~~-------~v~~S~~~~~~~~g~~~~~~~P-~~~--~~~~~~~~~~~~-----~g~~~i~~~~d~~~a~ 170 (261)
.|-+++|+|+.+ -++-+...+...||+.++..== .++ ..+++.+...++ .|+ .|+--+.-.+.+
T Consensus 132 p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~YlEagsga~~Pv~~e~v~~v~~~~~LivGG-GIrs~E~A~~~a 210 (240)
T COG1646 132 PDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYLEAGSGAGDPVPVEMVSRVLSDTPLIVGG-GIRSPEQAREMA 210 (240)
T ss_pred CCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEEEEecCCCCCCcCHHHHHHhhccceEEEcC-CcCCHHHHHHHH
Confidence 456999999853 1677777788889998765421 222 123333333222 242 343222222334
Q ss_pred C-CCCEEEEec
Q 024871 171 Q-GADVVYSDV 180 (261)
Q Consensus 171 ~-~aDviy~~~ 180 (261)
+ +||+|.|..
T Consensus 211 ~agAD~IVtG~ 221 (240)
T COG1646 211 EAGADTIVTGT 221 (240)
T ss_pred HcCCCEEEECc
Confidence 4 999999975
No 449
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=47.20 E-value=41 Score=31.09 Aligned_cols=63 Identities=17% Similarity=0.185 Sum_probs=40.1
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcC---HHHHhCCCCEEEE
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITND---PKEVVQGADVVYS 178 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d---~~~a~~~aDviy~ 178 (261)
+|+++|. +....-++..+..+|.+++++.|..-.|...+ +.+. .+.-..| +.+.++.+|+|..
T Consensus 1 ~igiiG~-gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~---ad~~---~~~~~~d~~~i~~~a~~~dvit~ 66 (352)
T TIGR01161 1 TVGILGG-GQLGRMLALAARPLGIKVHVLDPDANSPAVQV---ADHV---VLAPFFDPAAIRELAESCDVITF 66 (352)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCEEEEECCCCCCChhHh---Ccee---EeCCCCCHHHHHHHHhhCCEEEe
Confidence 5889997 57777888899999999999988654443221 1111 0111234 4556778888743
No 450
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=47.16 E-value=95 Score=29.98 Aligned_cols=102 Identities=19% Similarity=0.187 Sum_probs=69.0
Q ss_pred CCCCCHHHHHHHHhh----h----ccEEEEeeCCcch--HHHHhhhCCCcEEeCCC-------CCCChhHHHHHHHHHHH
Q 024871 38 GKREETRDAARVLCR----Y----NDIIMARVFGHQD--ILDLAKFATVPVINGLT-------DYNHPCQIMADALTIIE 100 (261)
Q Consensus 38 ~kgEs~~Dt~~~ls~----~----~D~iv~R~~~~~~--~~~~a~~~~vPVINa~~-------~~~HPtQ~L~Dl~Ti~e 100 (261)
--|.|+..+=...++ . +|+ |+-.+.++. ....|..+++|---++. ..--|+|-+=++ ..+.
T Consensus 268 ~eG~sVY~~R~~~G~~LA~e~P~d~Dv-Vi~VPdS~~~aAlgyA~~sG~py~e~l~rnrYvGRTFI~P~q~iR~~-~V~~ 345 (474)
T KOG0572|consen 268 FEGQSVYTVRLQCGEQLATEAPVDADV-VIPVPDSGTTAALGYAAKSGLPYQEVLIRNRYVGRTFIEPNQRIRQL-GVKK 345 (474)
T ss_pred ecccchHHHHHHHHhHhhhcCCcccce-EEecCCchhHHHHHHHHHhCCchhhhhhhcccccceecCccHHHHHh-hhhh
Confidence 346666655444332 1 354 444565554 56778889999544432 345799999886 5566
Q ss_pred HhC----CCCCcEEEEEcCC---CchHHHHHHHHhcCC---cEEEEeCCCC
Q 024871 101 HVG----RLEGTKVVYVGDG---NNIVHSWLLMASVIP---FHFVCACPKG 141 (261)
Q Consensus 101 ~~g----~l~~~~i~~vGd~---~~v~~S~~~~~~~~g---~~~~~~~P~~ 141 (261)
+|| .++|++|++|-|. +|+..-.+.++.--| .++..++|+-
T Consensus 346 Kl~~l~~~~~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~riAsPpi 396 (474)
T KOG0572|consen 346 KLGPLRQNFEGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHIRIASPPI 396 (474)
T ss_pred hcccchhhcCCceEEEEecceeccCchHHHHHHHHHcCCcEEEEEecCCcc
Confidence 666 4899999999994 678777888877666 5777888864
No 451
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=46.88 E-value=64 Score=27.44 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=27.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEe
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCA 137 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~ 137 (261)
+.|+++++.|..+.+...++..+..-|.++++.
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~ 34 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVN 34 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 467899999998888888888888889887654
No 452
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=46.83 E-value=1.8e+02 Score=24.68 Aligned_cols=65 Identities=17% Similarity=0.077 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh-ccEEEEee-CCcchHHHHhhhCCCcEEeCC
Q 024871 14 VSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY-NDIIMARV-FGHQDILDLAKFATVPVINGL 82 (261)
Q Consensus 14 ~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~-~D~iv~R~-~~~~~~~~~a~~~~vPVINa~ 82 (261)
-+++.++...|.+++.++.... .+...+.++.+.+. +|++++=. .......+.++..++|||-.+
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~l~~~~iPvv~~~ 85 (268)
T cd06273 19 QAFQETLAAHGYTLLVASSGYD----LDREYAQARKLLERGVDGLALIGLDHSPALLDLLARRGVPYVATW 85 (268)
T ss_pred HHHHHHHHHCCCEEEEecCCCC----HHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEc
Confidence 4678889999999888754321 12233445555554 89777632 223333444566789987643
No 453
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=46.78 E-value=28 Score=24.71 Aligned_cols=47 Identities=19% Similarity=0.081 Sum_probs=31.6
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCC---CCHHHH----HHHHHhC
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFE---PDKETV----EKARKAG 156 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~---~~~~~~----~~~~~~g 156 (261)
||+++|. +.+.--++..++.+|.+++++.+.... .+++.. +.+++.|
T Consensus 1 ~vvViGg-G~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~g 54 (80)
T PF00070_consen 1 RVVVIGG-GFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRG 54 (80)
T ss_dssp EEEEESS-SHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTT
T ss_pred CEEEECc-CHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCC
Confidence 6889996 667777777778889888887765432 345443 3344555
No 454
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=46.38 E-value=69 Score=29.94 Aligned_cols=37 Identities=11% Similarity=0.023 Sum_probs=29.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKG 141 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~ 141 (261)
.|++.+|++||- +.+....+..+++.|+ +++++-+..
T Consensus 21 ~L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 21 KIREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 588999999996 5577777777778887 788777654
No 455
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=46.36 E-value=1.9e+02 Score=25.91 Aligned_cols=52 Identities=13% Similarity=0.182 Sum_probs=36.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI 157 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~ 157 (261)
-.|.+|++.|..+.+.+..+.++...|.+++.++...-+ -++-.+.+++.|.
T Consensus 145 ~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~-~~~~~~~~~~~g~ 196 (341)
T cd08290 145 QPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPD-LEELKERLKALGA 196 (341)
T ss_pred CCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCc-chhHHHHHHhcCC
Confidence 367899999987889999999999999987666543211 1123345556664
No 456
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=46.32 E-value=1.3e+02 Score=22.96 Aligned_cols=94 Identities=21% Similarity=0.231 Sum_probs=51.0
Q ss_pred EEEEEcCCCchHHHHHHHHhcC-CcEEEEe--CCCCCCCCHHHHHHHHHhCCCeE------EEE-cCHHHHhCCCCEEEE
Q 024871 109 KVVYVGDGNNIVHSWLLMASVI-PFHFVCA--CPKGFEPDKETVEKARKAGISKI------EIT-NDPKEVVQGADVVYS 178 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~-g~~~~~~--~P~~~~~~~~~~~~~~~~g~~~i------~~~-~d~~~a~~~aDviy~ 178 (261)
|++++|-.+.+.+.++..+... +++++.+ .++... + .++..+ +++ ... ++++ ..++|+|++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~--~----~~~~~~-~~~~~~~~~~~~~~~~~--~~~~DvV~~ 71 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAG--K----RVSEAG-PHLKGEVVLELEPEDFE--ELAVDIVFL 71 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcC--c----CHHHHC-cccccccccccccCChh--hcCCCEEEE
Confidence 5889997778888887777664 5666655 332111 1 111112 111 111 2222 358999988
Q ss_pred ecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCC
Q 024871 179 DVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERG 225 (261)
Q Consensus 179 ~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg 225 (261)
-.+.. .. .+... ..++.++++.++.||....|.
T Consensus 72 ~~~~~----~~----~~~~~------~~~~~~~~g~~viD~s~~~~~ 104 (122)
T smart00859 72 ALPHG----VS----KEIAP------LLPKAAEAGVKVIDLSSAFRM 104 (122)
T ss_pred cCCcH----HH----HHHHH------HHHhhhcCCCEEEECCccccC
Confidence 65321 11 01000 123345778899999988774
No 457
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=46.29 E-value=46 Score=27.39 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=23.5
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhc-CCcEEEEeC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASV-IPFHFVCAC 138 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~-~g~~~~~~~ 138 (261)
.|+|+|+.++||...+.---++.|.+ .|.++++.+
T Consensus 2 ~l~gkKviiiGdRDGiPgpAie~c~~~~gaevvfs~ 37 (150)
T PF04723_consen 2 ILEGKKVIIIGDRDGIPGPAIEECVKTAGAEVVFSS 37 (150)
T ss_pred ccCCcEEEEEecCCCCCcHHHHHHHHhcCceEEEEe
Confidence 37899999999976665555555433 366655443
No 458
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=46.29 E-value=1.6e+02 Score=28.41 Aligned_cols=68 Identities=15% Similarity=0.090 Sum_probs=45.2
Q ss_pred hhCCCc--EEeCCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCC-CchH---HHHHHHHhcCCcEEEEeCC
Q 024871 72 KFATVP--VINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG-NNIV---HSWLLMASVIPFHFVCACP 139 (261)
Q Consensus 72 ~~~~vP--VINa~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~-~~v~---~S~~~~~~~~g~~~~~~~P 139 (261)
+..++| +|-+.-....-.+-|.+.+-.......+++.||+.+|+. ..+. -+...+..+||.++..+..
T Consensus 123 ~r~gi~~~~v~g~~~d~~~~~~i~~~~raa~~~~~lr~~rig~iG~~~~~~~~~~~d~~~~~~~fG~~v~~i~~ 196 (452)
T cd00578 123 ARLGIPFKVVYGHWKDEDVLRKIESWARAAAAVATLRGLRVGRFGDRMRGMAVTEGDKVLAQIKFGVSVEYLEV 196 (452)
T ss_pred HHcCCceeEEECCCCCHHHHHHHHHHHHHHHHHHHhhcCceEEECCCcCCcEEecCCHHHHHHhhCeEEEEEcH
Confidence 446677 444432224445667777777777778999999999985 2322 2345677899999887743
No 459
>PLN03013 cysteine synthase
Probab=46.27 E-value=1.1e+02 Score=29.74 Aligned_cols=77 Identities=18% Similarity=0.263 Sum_probs=52.1
Q ss_pred CCChhHHHHHH-----HHHHHHhCCC-CCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCC
Q 024871 85 YNHPCQIMADA-----LTIIEHVGRL-EGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGIS 158 (261)
Q Consensus 85 ~~HPtQ~L~Dl-----~Ti~e~~g~l-~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~ 158 (261)
...||-.+=|= +.-.++.|.+ .|.+.++.--.+|...|++..++.+|.+++++-|+. .+++.++.++.+| +
T Consensus 146 ~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~~VvvP~~--~s~~K~~~ira~G-A 222 (429)
T PLN03013 146 IMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPAS--MSMERRVLLKAFG-A 222 (429)
T ss_pred cCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC--CcHHHHHHHHHcC-C
Confidence 45777766552 2223345554 343323333358999999999999999999999986 4556667788898 5
Q ss_pred eEEEEc
Q 024871 159 KIEITN 164 (261)
Q Consensus 159 ~i~~~~ 164 (261)
.+..++
T Consensus 223 eVi~v~ 228 (429)
T PLN03013 223 ELVLTD 228 (429)
T ss_pred EEEEEC
Confidence 777664
No 460
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=46.09 E-value=1.4e+02 Score=26.96 Aligned_cols=55 Identities=15% Similarity=0.273 Sum_probs=39.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcC
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITND 165 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d 165 (261)
|.+|+ ..-.+|...|++..++.+|++.+++-|+.- ++.-++..+.+| +.+.....
T Consensus 58 g~~vv-~aSsGN~g~alA~~a~~~G~~~~i~vp~~~--~~~k~~~~~~~G-A~v~~~~~ 112 (299)
T TIGR01136 58 GDTII-EATSGNTGIALAMVAAAKGYKLILTMPETM--SLERRKLLRAYG-AELILTPA 112 (299)
T ss_pred CCEEE-EeCCChHHHHHHHHHHHcCCcEEEEECCCC--CHHHHHHHHHcC-CEEEEeCC
Confidence 44443 223489999999999999999999999863 344556777888 56776543
No 461
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=46.05 E-value=1e+02 Score=28.17 Aligned_cols=65 Identities=18% Similarity=0.198 Sum_probs=43.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC--------------CeEEEEcCHHHHhCCC
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI--------------SKIEITNDPKEVVQGA 173 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~--------------~~i~~~~d~~~a~~~a 173 (261)
.||+++|- +.+..+++..+..-|.+++++..+. ..+..++.|. ..+..+++. ++++++
T Consensus 3 mkI~IiG~-G~mG~~~A~~L~~~G~~V~~~~r~~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 74 (341)
T PRK08229 3 ARICVLGA-GSIGCYLGGRLAAAGADVTLIGRAR------IGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATA 74 (341)
T ss_pred ceEEEECC-CHHHHHHHHHHHhcCCcEEEEecHH------HHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCC
Confidence 57999995 7788888888877788888776421 1233344331 113345565 578999
Q ss_pred CEEEEec
Q 024871 174 DVVYSDV 180 (261)
Q Consensus 174 Dviy~~~ 180 (261)
|+|+...
T Consensus 75 D~vil~v 81 (341)
T PRK08229 75 DLVLVTV 81 (341)
T ss_pred CEEEEEe
Confidence 9998864
No 462
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=45.79 E-value=47 Score=33.47 Aligned_cols=40 Identities=18% Similarity=0.071 Sum_probs=32.3
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEP 144 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~ 144 (261)
+++.+||+++|. +....-++..+..+|.++++..|..-.|
T Consensus 19 ~~~~k~IgIIGg-Gqlg~mla~aA~~lG~~Vi~ld~~~~ap 58 (577)
T PLN02948 19 GVSETVVGVLGG-GQLGRMLCQAASQMGIKVKVLDPLEDCP 58 (577)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 488899999997 4677778888999999999988754333
No 463
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=45.51 E-value=1.8e+02 Score=27.33 Aligned_cols=87 Identities=20% Similarity=0.300 Sum_probs=56.8
Q ss_pred CChhHHHHHHHHHHHHh------CCCCCcEEEEEcCCCchHHHHHHHHhcCC-cEEEEeCCCCCCCCHHHHHHHHHhCCC
Q 024871 86 NHPCQIMADALTIIEHV------GRLEGTKVVYVGDGNNIVHSWLLMASVIP-FHFVCACPKGFEPDKETVEKARKAGIS 158 (261)
Q Consensus 86 ~HPtQ~L~Dl~Ti~e~~------g~l~~~~i~~vGd~~~v~~S~~~~~~~~g-~~~~~~~P~~~~~~~~~~~~~~~~g~~ 158 (261)
.=|.-.+..+-.+.... +-=+|+.|.+.|..+.|....+.++...+ .+++.+|-.+ -.+.+++.|..
T Consensus 131 ~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e------~~~l~k~lGAd 204 (347)
T KOG1198|consen 131 ALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKE------KLELVKKLGAD 204 (347)
T ss_pred cCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccc------hHHHHHHcCCc
Confidence 35666677766666655 45678899999998999999999999999 5666555322 23456666744
Q ss_pred eEEEEcC--HHHHhCC-----CCEEEE
Q 024871 159 KIEITND--PKEVVQG-----ADVVYS 178 (261)
Q Consensus 159 ~i~~~~d--~~~a~~~-----aDviy~ 178 (261)
.+.-+++ ..|.+++ .|+|+=
T Consensus 205 ~vvdy~~~~~~e~~kk~~~~~~DvVlD 231 (347)
T KOG1198|consen 205 EVVDYKDENVVELIKKYTGKGVDVVLD 231 (347)
T ss_pred EeecCCCHHHHHHHHhhcCCCccEEEE
Confidence 3333333 3344444 677764
No 464
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=45.41 E-value=1.3e+02 Score=25.68 Aligned_cols=101 Identities=17% Similarity=0.174 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHH-HHhhhccEEEEeeCCcc---hHHHHhhhCCCcEEeCCCCCC
Q 024871 11 RTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAAR-VLCRYNDIIMARVFGHQ---DILDLAKFATVPVINGLTDYN 86 (261)
Q Consensus 11 RTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~-~ls~~~D~iv~R~~~~~---~~~~~a~~~~vPVINa~~~~~ 86 (261)
...-.++.++.++|.++...+... .. +...+..+ .++.-+|.|++-..... ...+.++..++|||.-+....
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~-~~---~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~i~~~~~~~ipvV~~~~~~~ 91 (273)
T cd06305 16 AYLAGTKAEAEALGGDLRVYDAGG-DD---AKQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKRALDAGIPVVAFDVDSD 91 (273)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCC-CH---HHHHHHHHHHHHcCCCEEEEecCChhhhHHHHHHHHHcCCCEEEecCCCC
Confidence 345678899999999988875421 11 11222333 23445899998643322 222334567899988654322
Q ss_pred Ch--hHHHHHHHHH----HHHhCC-C-CCcEEEEEcC
Q 024871 87 HP--CQIMADALTI----IEHVGR-L-EGTKVVYVGD 115 (261)
Q Consensus 87 HP--tQ~L~Dl~Ti----~e~~g~-l-~~~~i~~vGd 115 (261)
+| .....|-+.. -+++.. + ...+|++++.
T Consensus 92 ~~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~ 128 (273)
T cd06305 92 NPKVNNTTQDDYSLARLSLDQLVKDLGGKGNVGYVNV 128 (273)
T ss_pred CCccceeeechHHHHHHHHHHHHHHhCCCCCEEEEEc
Confidence 22 2344443333 222222 1 2368888864
No 465
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=45.33 E-value=2e+02 Score=24.69 Aligned_cols=54 Identities=19% Similarity=0.237 Sum_probs=36.9
Q ss_pred CCcEEEEEcCCC----chHHHHHHHHhcC-CcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 106 EGTKVVYVGDGN----NIVHSWLLMASVI-PFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 106 ~~~~i~~vGd~~----~v~~S~~~~~~~~-g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
++.+|+||.-.. ...+|...+...+ |+++....... .++..+.+.+||+||...
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~---------------------~~~~~~~l~~ad~I~l~G 88 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFD---------------------TEDPLDALLEADVIYVGG 88 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccC---------------------cccHHHHHhcCCEEEECC
Confidence 568999998653 3566777777778 77666442210 235567899999999975
No 466
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=45.24 E-value=87 Score=28.26 Aligned_cols=68 Identities=22% Similarity=0.292 Sum_probs=41.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCC--cEEEEeCCCCCCCCHHH-HHHHHHhCCCeEEEEcCHHHHhCC--CCEEEEec
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIP--FHFVCACPKGFEPDKET-VEKARKAGISKIEITNDPKEVVQG--ADVVYSDV 180 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g--~~~~~~~P~~~~~~~~~-~~~~~~~g~~~i~~~~d~~~a~~~--aDviy~~~ 180 (261)
-+||++||-++.....++......+ +.++-++ .++++. .+.++++|.. ..++|.++.+++ .|+||.-.
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~----d~~~~~a~~~a~~~~~~--~~~~~~~~ll~~~~iD~V~Iat 75 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVV----DRDPERAEAFAEEFGIA--KAYTDLEELLADPDIDAVYIAT 75 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEe----cCCHHHHHHHHHHcCCC--cccCCHHHHhcCCCCCEEEEcC
Confidence 4799999975444444555555554 3444332 222332 2345567743 678899999986 58888743
No 467
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=45.14 E-value=66 Score=29.42 Aligned_cols=49 Identities=18% Similarity=0.271 Sum_probs=28.1
Q ss_pred CCCCCCCHHHHHHHHh---hh-----cc-EEEEeeCC---------cchHHHHhhhCCCcEEeCCCC
Q 024871 36 QMGKREETRDAARVLC---RY-----ND-IIMARVFG---------HQDILDLAKFATVPVINGLTD 84 (261)
Q Consensus 36 ~~~kgEs~~Dt~~~ls---~~-----~D-~iv~R~~~---------~~~~~~~a~~~~vPVINa~~~ 84 (261)
.+.+-+...+.++.|. .. +| +|++|... ++.+.+....+.+|||.|=|+
T Consensus 50 ~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~PvisaIGH 116 (319)
T PF02601_consen 50 SVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVISAIGH 116 (319)
T ss_pred cccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEEecCC
Confidence 3444444555555444 33 57 56678743 233444445689999998653
No 468
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=45.08 E-value=92 Score=26.63 Aligned_cols=65 Identities=12% Similarity=-0.061 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh-ccEEEEeeCCcc-hHHHHhhhCCCcEEeCC
Q 024871 13 RVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY-NDIIMARVFGHQ-DILDLAKFATVPVINGL 82 (261)
Q Consensus 13 R~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~-~D~iv~R~~~~~-~~~~~a~~~~vPVINa~ 82 (261)
.-+++.++...|.+++.+..... .+...+.++.+..+ +|.+++=..... ...++ +..++|||-.+
T Consensus 18 ~~~i~~~~~~~g~~~~~~~~~~~----~~~~~~~i~~l~~~~~dgiii~~~~~~~~~~~~-~~~~iPvV~~~ 84 (263)
T cd06280 18 SRAVEDAAYRAGLRVILCNTDED----PEKEAMYLELMEEERVTGVIFAPTRATLRRLAE-LRLSFPVVLID 84 (263)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCC----HHHHHHHHHHHHhCCCCEEEEeCCCCCchHHHH-HhcCCCEEEEC
Confidence 34788999999999887754321 23334455555555 898888332222 22333 45679987644
No 469
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=44.81 E-value=60 Score=30.41 Aligned_cols=57 Identities=16% Similarity=0.115 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 120 VHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 120 ~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
...++..+..-|.++++..+..-...++..+.+.+.| +..+.|..++++++|+|++-
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~G---i~~asd~~eaa~~ADvVIla 88 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAG---VKVVSDDAEAAKHGEIHILF 88 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCC---CEEeCCHHHHHhCCCEEEEE
Confidence 3444444445678888877644323332344455555 35577888999999999985
No 470
>PRK12829 short chain dehydrogenase; Provisional
Probab=44.75 E-value=47 Score=28.52 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=33.3
Q ss_pred HHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeC
Q 024871 99 IEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCAC 138 (261)
Q Consensus 99 ~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~ 138 (261)
.+.++.++++++.+.|..+.+..+++..+..-|.+++.+.
T Consensus 3 ~~~~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~ 42 (264)
T PRK12829 3 IDLLKPLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCD 42 (264)
T ss_pred hhHhhccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 4556778999999999989999999988877888877664
No 471
>PLN02629 powdery mildew resistance 5
Probab=44.71 E-value=17 Score=34.87 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=21.1
Q ss_pred CCCCcEEEEEcCC--CchHHHHHHHHhc
Q 024871 104 RLEGTKVVYVGDG--NNIVHSWLLMASV 129 (261)
Q Consensus 104 ~l~~~~i~~vGd~--~~v~~S~~~~~~~ 129 (261)
.+.||+++||||- .|-..|++-++..
T Consensus 117 ~~RgKrl~FVGDSL~RNQ~eSLvClL~~ 144 (387)
T PLN02629 117 KMKGKTVMFVGDSLGRNQWESLICLISS 144 (387)
T ss_pred HhcCCeEEEeccccchhHHHHHHHHhhc
Confidence 3789999999994 5789999877654
No 472
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=44.70 E-value=99 Score=30.28 Aligned_cols=159 Identities=9% Similarity=-0.033 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh-ccEEEEeeCCcchHH-------HHhhhCC-C-cEEe
Q 024871 11 RTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY-NDIIMARVFGHQDIL-------DLAKFAT-V-PVIN 80 (261)
Q Consensus 11 RTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~-~D~iv~R~~~~~~~~-------~~a~~~~-v-PVIN 80 (261)
+.-.=+..++..+|....|..-. + ..+.+.+..+.+... +..+-+=.|-...+. +.|+..+ | -|++
T Consensus 229 ~SP~~hn~~f~~~gl~~~Y~~~~---v-~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~~d~~~~~A~~iGAVNTv~~ 304 (477)
T PRK09310 229 ISHLSHNPLFSQLSLNCPYIKLP---L-TPQELPKFFSTIRDLPFLGLSVTMPLKTAVLDFLDKLDPSVKLCGSCNTLVF 304 (477)
T ss_pred cCHHHHHHHHHHcCCCcEEEEee---c-CHHHHHHHHHHHHhCCCCEEEECccCHHHHHHHhccCCHHHHHhCcceEEEe
Confidence 34444778888899887665322 1 124566666666443 345544444332222 2222221 1 1444
Q ss_pred CCC-CCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCe
Q 024871 81 GLT-DYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISK 159 (261)
Q Consensus 81 a~~-~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~ 159 (261)
-+| -..|=|-...=+.++++....+++++++++|- +.+..+.+..+...|.+++++.... +...+.+++.+...
T Consensus 305 ~~g~l~G~NTD~~G~~~~l~~~~~~~~~k~vlIiGa-GgiG~aia~~L~~~G~~V~i~~R~~----~~~~~la~~~~~~~ 379 (477)
T PRK09310 305 RNGKIEGYNTDGEGLFSLLKQKNIPLNNQHVAIVGA-GGAAKAIATTLARAGAELLIFNRTK----AHAEALASRCQGKA 379 (477)
T ss_pred eCCEEEEEecCHHHHHHHHHhcCCCcCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHhccce
Confidence 322 22333433333334444334588999999995 6888898888888899887764321 11112222332111
Q ss_pred EEEEcCHHHHhCCCCEEEEec
Q 024871 160 IEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 160 i~~~~d~~~a~~~aDviy~~~ 180 (261)
+. .+++. .+.++|+|+...
T Consensus 380 ~~-~~~~~-~l~~~DiVInat 398 (477)
T PRK09310 380 FP-LESLP-ELHRIDIIINCL 398 (477)
T ss_pred ec-hhHhc-ccCCCCEEEEcC
Confidence 11 22322 367899998765
No 473
>PRK07591 threonine synthase; Validated
Probab=44.47 E-value=63 Score=31.07 Aligned_cols=53 Identities=13% Similarity=0.089 Sum_probs=39.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEc
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITN 164 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~ 164 (261)
.+| ..+-.+|...|++..++++|++.+++-|+. .++.-+..++.+| +.+...+
T Consensus 138 ~~v-v~aSsGN~g~alA~~aa~~Gl~~~I~vP~~--~~~~k~~~~~~~G-A~Vi~v~ 190 (421)
T PRK07591 138 TTV-ACASTGNLANSVAAHAARAGLDSCVFIPAD--LEAGKIVGTLVYG-PTLVAVD 190 (421)
T ss_pred CEE-EEeCCCHHHHHHHHHHHHcCCCEEEEEcCC--CCHHHHHHHHHcC-CEEEEEC
Confidence 344 455568999999999999999999999986 3344455677888 5666554
No 474
>PRK05086 malate dehydrogenase; Provisional
Probab=44.43 E-value=1.7e+02 Score=26.86 Aligned_cols=71 Identities=21% Similarity=0.221 Sum_probs=39.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhc-C--CcEEEEeCCCCCCCCHHHHHHHHHhC-CCeEEE--EcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASV-I--PFHFVCACPKGFEPDKETVEKARKAG-ISKIEI--TNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~-~--g~~~~~~~P~~~~~~~~~~~~~~~~g-~~~i~~--~~d~~~a~~~aDviy~~~ 180 (261)
+||+++|-.++|..+++..+.. . +-++++.--+.- .....++.. ..+ ...+.- .+|+.++++++|+|+...
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~-~~~~~~~i~~~~~~d~~~~l~~~DiVIita 77 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLS-HIPTAVKIKGFSGEDPTPALEGADVVLISA 77 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-Ccceehhhh-cCCCCceEEEeCCCCHHHHcCCCCEEEEcC
Confidence 5899999867888777765532 3 345555432111 111112221 111 112322 357788999999988864
No 475
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=44.33 E-value=76 Score=31.19 Aligned_cols=71 Identities=11% Similarity=0.171 Sum_probs=42.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhcC--CcEEEEeCCC---------C-CCCCHHHHH-HHHHhCCCeEEEEcCHHHHhCCCC
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVI--PFHFVCACPK---------G-FEPDKETVE-KARKAGISKIEITNDPKEVVQGAD 174 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~--g~~~~~~~P~---------~-~~~~~~~~~-~~~~~g~~~i~~~~d~~~a~~~aD 174 (261)
.||+++|- +.|...++..++.. |.+++.+-.. + ....+.-++ ..++.-...+.+++|.++++++||
T Consensus 2 m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad 80 (473)
T PLN02353 2 VKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD 80 (473)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence 57999995 77777777766655 4666544311 0 001111112 122211135888999999999999
Q ss_pred EEEEe
Q 024871 175 VVYSD 179 (261)
Q Consensus 175 viy~~ 179 (261)
+++..
T Consensus 81 vi~I~ 85 (473)
T PLN02353 81 IVFVS 85 (473)
T ss_pred EEEEE
Confidence 98774
No 476
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=44.32 E-value=70 Score=24.31 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC-CCeEEEEcCHHHHhCCCCEEEEec
Q 024871 120 VHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG-ISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 120 ~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g-~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+--++..+...|.++.+.-|-- ... ..+..+ ...++.+++++++++++|+|+..+
T Consensus 19 ~~~l~~~L~~~g~~V~~~DP~v--~~~----~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t 74 (106)
T PF03720_consen 19 ALELIEELKERGAEVSVYDPYV--DEE----EIKELGKLEGVEVCDDLEEALKGADAVVLAT 74 (106)
T ss_dssp HHHHHHHHHHTT-EEEEE-TTS--HHH----HHHHHCHHHCEEEESSHHHHHTTESEEEESS
T ss_pred HHHHHHHHHHCCCEEEEECCcc--ChH----HHHhhCCccceEEecCHHHHhcCCCEEEEEe
Confidence 3345666777899988777732 111 122211 024788899999999999988865
No 477
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=44.24 E-value=87 Score=26.98 Aligned_cols=37 Identities=8% Similarity=0.159 Sum_probs=31.4
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCC
Q 024871 103 GRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACP 139 (261)
Q Consensus 103 g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P 139 (261)
-+++|+++.+.|..+.+...++..+..-|.++++++-
T Consensus 11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~ 47 (258)
T PRK06935 11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTH 47 (258)
T ss_pred ccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 3578999999999888999999888888999877754
No 478
>PRK08818 prephenate dehydrogenase; Provisional
Probab=43.99 E-value=82 Score=29.97 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=41.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhc-CCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASV-IPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~-~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+...||++||-.+-+..|++..+.. .+.+++...|.. +...++++++++||+|+.-.
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d-------------------~~~~~~~~~v~~aDlVilav 59 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPAD-------------------PGSLDPATLLQRADVLIFSA 59 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCc-------------------cccCCHHHHhcCCCEEEEeC
Confidence 3467999999658899999998875 477877665521 11346778889999988753
No 479
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=43.94 E-value=2.3e+02 Score=25.11 Aligned_cols=164 Identities=11% Similarity=0.046 Sum_probs=83.7
Q ss_pred ChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh-ccEEEEeeCCcchHH-------HHhhhCCCc--E
Q 024871 9 SMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY-NDIIMARVFGHQDIL-------DLAKFATVP--V 78 (261)
Q Consensus 9 StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~-~D~iv~R~~~~~~~~-------~~a~~~~vP--V 78 (261)
..++-.=+..+++.+|.+..|..-. + ..|.+++..+.+... ...+-+=.+--..+. +.|+..+.- |
T Consensus 12 hS~SP~~hn~~~~~~g~~~~y~~~~---v-~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~~A~~~gavNti 87 (270)
T TIGR00507 12 HSKSPLIHNAFFKQLGLEGPYIAFL---V-PPDDLEDALSGFFALGFKGANVTSPFKEEAFQFLDEIDERAKLAGAVNTL 87 (270)
T ss_pred cccCHHHHHHHHHHcCCCcEEEEEe---c-CHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhhCCHHHHHhCCceEE
Confidence 4555566788999999987775322 1 134678877777554 344444333222222 222222211 3
Q ss_pred Ee-CCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC
Q 024871 79 IN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI 157 (261)
Q Consensus 79 IN-a~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~ 157 (261)
++ .+.-..|=|-...=+..+.+.....++++++++|- +.+..+.+..+...|.+++++.- ...-.+++.+...+.|
T Consensus 88 ~~~~g~l~g~NTD~~G~~~~l~~~~~~~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R-~~~~~~~la~~~~~~~- 164 (270)
T TIGR00507 88 KLEDGKLVGYNTDGIGLVSDLERLIPLRPNQRVLIIGA-GGAARAVALPLLKADCNVIIANR-TVSKAEELAERFQRYG- 164 (270)
T ss_pred EeeCCEEEEEcCCHHHHHHHHHhcCCCccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeC-CHHHHHHHHHHHhhcC-
Confidence 34 22122232322222222333222366899999997 47888888777777888777642 2111122222222223
Q ss_pred CeEEEEcCHHHHhCCCCEEEEec
Q 024871 158 SKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 158 ~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+......+....++|+|+...
T Consensus 165 -~~~~~~~~~~~~~~~DivInat 186 (270)
T TIGR00507 165 -EIQAFSMDELPLHRVDLIINAT 186 (270)
T ss_pred -ceEEechhhhcccCccEEEECC
Confidence 1222222233456899998865
No 480
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=43.90 E-value=77 Score=28.90 Aligned_cols=46 Identities=17% Similarity=0.115 Sum_probs=36.5
Q ss_pred CCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEc
Q 024871 116 GNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITN 164 (261)
Q Consensus 116 ~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~ 164 (261)
.+|...|++..++.+|++++++-|++. ++..++.++..| +.+..++
T Consensus 78 sGN~g~alA~~a~~~G~~~~ivvp~~~--~~~k~~~l~~~G-A~Vi~~~ 123 (324)
T cd01563 78 TGNTSASLAAYAARAGIKCVVFLPAGK--ALGKLAQALAYG-ATVLAVE 123 (324)
T ss_pred CCHHHHHHHHHHHHcCCceEEEEeCCC--CHHHHHHHHHcC-CEEEEEC
Confidence 478999999999999999999999876 445566777888 5666554
No 481
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=43.79 E-value=98 Score=26.54 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=24.4
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCC
Q 024871 103 GRLEGTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPK 140 (261)
Q Consensus 103 g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~ 140 (261)
..|+..||+++|-+ .+....+..+++.|+ +++++-+.
T Consensus 17 ~~L~~~~V~IvG~G-glGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 17 QKLEQATVAICGLG-GLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHHhCCcEEEECcC-HHHHHHHHHHHHcCCCEEEEECCC
Confidence 35889999999973 344444444555676 57777654
No 482
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=43.61 E-value=66 Score=27.81 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=32.3
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCC
Q 024871 103 GRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPK 140 (261)
Q Consensus 103 g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~ 140 (261)
..++|+++.++|..+.+..+++..+...|..+++++..
T Consensus 3 ~~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~ 40 (261)
T PRK08936 3 SDLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRS 40 (261)
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 45889999999998889999999888889988876553
No 483
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=43.46 E-value=36 Score=27.69 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=42.3
Q ss_pred EEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEE-------EcCHHHHhCCCCEEEEec
Q 024871 110 VVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEI-------TNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 110 i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~-------~~d~~~a~~~aDviy~~~ 180 (261)
|+++|-.+++...++..+..-|.+++..+.+.-.. .+. .++++ .+++.++++++|+||...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~--------~~~--~~~~~~~~d~~d~~~~~~al~~~d~vi~~~ 68 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKA--------EDS--PGVEIIQGDLFDPDSVKAALKGADAVIHAA 68 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGH--------HHC--TTEEEEESCTTCHHHHHHHHTTSSEEEECC
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhc--------ccc--cccccceeeehhhhhhhhhhhhcchhhhhh
Confidence 67899889999999999988899888877543211 111 12222 123467899999999864
No 484
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=43.21 E-value=27 Score=31.15 Aligned_cols=53 Identities=15% Similarity=0.240 Sum_probs=39.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEE
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEIT 163 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~ 163 (261)
+.+| +.+-.+|...|++..++.+|++++++.|++ .++..++.++..| +.+...
T Consensus 56 ~~~v-v~assGN~g~a~A~~a~~~g~~~~i~~p~~--~~~~~~~~~~~~G-a~v~~~ 108 (306)
T PF00291_consen 56 GRTV-VGASSGNHGRALAYAAARLGLKCTIVVPED--VSPEKLKQMRALG-AEVILV 108 (306)
T ss_dssp TSEE-EEESSSHHHHHHHHHHHHHTCEEEEEEETT--SHHHHHHHHHHTT-CEEEEE
T ss_pred ccee-eeeccCCceehhhhhhhhccccceeeeccc--cccccccceeeec-ceEEEc
Confidence 3555 555568999999999999999999999988 3345556677787 455544
No 485
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=43.12 E-value=1.2e+02 Score=27.57 Aligned_cols=125 Identities=10% Similarity=-0.016 Sum_probs=69.2
Q ss_pred ChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh-ccEEEEeeCCcchHHHH-------hhhCCC--cE
Q 024871 9 SMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY-NDIIMARVFGHQDILDL-------AKFATV--PV 78 (261)
Q Consensus 9 StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~-~D~iv~R~~~~~~~~~~-------a~~~~v--PV 78 (261)
..++-.=+..++..+|....|..-. + ..|.+++..+.+... +..+-+=-+--..+..+ |+..+. -|
T Consensus 19 hSlSP~ihn~~f~~~gl~~~Y~~~~---v-~~~~l~~~~~~l~~~~~~G~nVTiP~K~~~~~~~D~l~~~A~~iGAVNTv 94 (288)
T PRK12749 19 HSLSPEMQNKALEKAGLPFTYMAFE---V-DNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTI 94 (288)
T ss_pred cccCHHHHHHHHHHcCCCeEEEEEe---c-CHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhccCCHHHHHhCceeEE
Confidence 4455566788899999988775332 1 235678777777554 34444433322222222 222111 13
Q ss_pred EeCCC-CCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeC
Q 024871 79 INGLT-DYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPF-HFVCAC 138 (261)
Q Consensus 79 INa~~-~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~ 138 (261)
++-.+ -..|=|-...=+..+++....++|++++++|- +..+++.+..+...|. +++++.
T Consensus 95 ~~~~g~l~G~NTD~~Gf~~~l~~~~~~~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~n 155 (288)
T PRK12749 95 VNDDGYLRGYNTDGTGHIRAIKESGFDIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFN 155 (288)
T ss_pred EccCCEEEEEecCHHHHHHHHHhcCCCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEe
Confidence 43222 12333333332333344334689999999996 4557887777777786 666664
No 486
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=42.89 E-value=54 Score=30.41 Aligned_cols=73 Identities=19% Similarity=0.202 Sum_probs=43.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCC------HHHHHHHHHhC----------CCeEEEEcCHHHHh
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPD------KETVEKARKAG----------ISKIEITNDPKEVV 170 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~------~~~~~~~~~~g----------~~~i~~~~d~~~a~ 170 (261)
-+||+.+|- +-+.+.++..++.-|.+|++.-+..-... ...++++.+.| .+.+..+.|+. ++
T Consensus 3 i~kv~ViGa-G~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l 80 (307)
T COG1250 3 IKKVAVIGA-GVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-AL 80 (307)
T ss_pred ccEEEEEcc-cchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hh
Confidence 478999996 56777787777775577777665411100 11112222222 13455566655 89
Q ss_pred CCCCEEEEecc
Q 024871 171 QGADVVYSDVW 181 (261)
Q Consensus 171 ~~aDviy~~~w 181 (261)
++||.|+--.-
T Consensus 81 ~~~DlVIEAv~ 91 (307)
T COG1250 81 KDADLVIEAVV 91 (307)
T ss_pred ccCCEEEEecc
Confidence 99999999753
No 487
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=42.84 E-value=2.3e+02 Score=24.70 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=47.3
Q ss_pred HHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 100 EHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 100 e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
...+.+.|.++.+.|..+.+.+..+..+..+|.+++.++.. ++-.+.+++.|...+ +....+..-++.|+++-.
T Consensus 126 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~-----~~~~~~~~~~g~~~~-~~~~~~~~~~~~d~vl~~ 199 (305)
T cd08270 126 RRGGPLLGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGS-----PARAEGLRELGAAEV-VVGGSELSGAPVDLVVDS 199 (305)
T ss_pred HHhCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHcCCcEE-EeccccccCCCceEEEEC
Confidence 44566679999999987889999999999999987766542 233455666664322 111111111357887753
No 488
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=42.41 E-value=64 Score=31.94 Aligned_cols=67 Identities=15% Similarity=0.108 Sum_probs=44.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH----hCCCeEEEEcCHHHHhCC---CCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK----AGISKIEITNDPKEVVQG---ADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~----~g~~~i~~~~d~~~a~~~---aDviy~~~ 180 (261)
.+|++|| ++++...++.-+..-|.++++.-. ..+-.+.+.+ .|...+...++++++++. +|+|++-.
T Consensus 7 ~~IG~IG-LG~MG~~mA~nL~~~G~~V~V~NR-----t~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v 80 (493)
T PLN02350 7 SRIGLAG-LAVMGQNLALNIAEKGFPISVYNR-----TTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILV 80 (493)
T ss_pred CCEEEEe-eHHHHHHHHHHHHhCCCeEEEECC-----CHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEEC
Confidence 4799999 577888887777777888876532 2222222222 243234467889998876 99999853
No 489
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=42.38 E-value=59 Score=28.47 Aligned_cols=78 Identities=18% Similarity=0.103 Sum_probs=45.2
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh-ccEEEEeeCC-cchHHHHhhhCCCcE
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY-NDIIMARVFG-HQDILDLAKFATVPV 78 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~-~D~iv~R~~~-~~~~~~~a~~~~vPV 78 (261)
++.+|+++|-|.- |-+.|-.-...-+- ....-+-..+|+++..++++.. .|++=+.... .+.+.++.+..++||
T Consensus 26 iG~If~~~SpR~V-s~~~a~~i~~~v~~---~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e~~~~~~~l~~~~~~~v 101 (208)
T COG0135 26 IGFIFVPKSPRYV-SPEQAREIASAVPK---VKVVGVFVNESIEEILEIAEELGLDAVQLHGDEDPEYIDQLKEELGVPV 101 (208)
T ss_pred EEEEEcCCCCCcC-CHHHHHHHHHhCCC---CCEEEEECCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhcCCce
Confidence 4678888888754 34434333322110 0112233577888888888888 6888775532 234555655557888
Q ss_pred EeCC
Q 024871 79 INGL 82 (261)
Q Consensus 79 INa~ 82 (261)
|=+.
T Consensus 102 ~kai 105 (208)
T COG0135 102 IKAI 105 (208)
T ss_pred EEEE
Confidence 7764
No 490
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=42.31 E-value=2.5e+02 Score=25.89 Aligned_cols=88 Identities=20% Similarity=0.294 Sum_probs=55.9
Q ss_pred ChhHHHHHHHHHHHHhCCCC-CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEE--E
Q 024871 87 HPCQIMADALTIIEHVGRLE-GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEI--T 163 (261)
Q Consensus 87 HPtQ~L~Dl~Ti~e~~g~l~-~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~--~ 163 (261)
=|++.+.=.+.+.+ ++.++ |.+|.+.|-.+.|..-.+.++..+|..++.++-.. ++ .+.+++.|...+.- .
T Consensus 123 l~~~~~TA~~~l~~-~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~----~k-~~~~~~lGAd~vi~y~~ 196 (326)
T COG0604 123 LPLAGLTAWLALFD-RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSS----EK-LELLKELGADHVINYRE 196 (326)
T ss_pred HHHHHHHHHHHHHH-hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCH----HH-HHHHHhcCCCEEEcCCc
Confidence 46666666666655 44444 79999999889999999999999995433332111 22 23677888433322 2
Q ss_pred cCHHHHhC------CCCEEEEec
Q 024871 164 NDPKEVVQ------GADVVYSDV 180 (261)
Q Consensus 164 ~d~~~a~~------~aDviy~~~ 180 (261)
+|..+.++ +.|+|+-..
T Consensus 197 ~~~~~~v~~~t~g~gvDvv~D~v 219 (326)
T COG0604 197 EDFVEQVRELTGGKGVDVVLDTV 219 (326)
T ss_pred ccHHHHHHHHcCCCCceEEEECC
Confidence 23555443 689998764
No 491
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=42.10 E-value=1.7e+02 Score=28.14 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=28.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhc-CCcEEEEeCC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASV-IPFHFVCACP 139 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~-~g~~~~~~~P 139 (261)
.+.|+|+++.||. ..+.|++..+.. +|++++.++.
T Consensus 287 ~l~Gkrvai~g~~-~~~~~la~~L~eelGm~~v~v~t 322 (427)
T PRK02842 287 LLRGKRVFFLPDS-QLEIPLARFLSRECGMELVEVGT 322 (427)
T ss_pred hcCCcEEEEECCc-hhHHHHHHHHHHhCCCEEEEeCC
Confidence 4899999999984 567788888887 9999887765
No 492
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=42.09 E-value=2.4e+02 Score=24.75 Aligned_cols=48 Identities=17% Similarity=0.266 Sum_probs=35.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI 157 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~ 157 (261)
..|-+|.+.|..+.+.+..+.++..+|.+++..+... +-.+.+++.|.
T Consensus 137 ~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~-----~~~~~~~~~g~ 184 (323)
T cd05282 137 PPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRD-----EQVEELKALGA 184 (323)
T ss_pred CCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCh-----HHHHHHHhcCC
Confidence 4578999999878899999999999999987765543 22344555553
No 493
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=41.96 E-value=1.1e+02 Score=24.03 Aligned_cols=69 Identities=20% Similarity=0.218 Sum_probs=40.8
Q ss_pred EEEEcCCCchHHHHH-HHHh--cCC--cEEEEeCCC---CCCCCHHHHHHHHHhCCCeEEEEcCH-HHHhCCCCEEEEe
Q 024871 110 VVYVGDGNNIVHSWL-LMAS--VIP--FHFVCACPK---GFEPDKETVEKARKAGISKIEITNDP-KEVVQGADVVYSD 179 (261)
Q Consensus 110 i~~vGd~~~v~~S~~-~~~~--~~g--~~~~~~~P~---~~~~~~~~~~~~~~~g~~~i~~~~d~-~~a~~~aDviy~~ 179 (261)
|.||.. +|+++|-+ ++.. ..+ +++.-++-. +-.+++..++.+++.|+.--.....+ ++-++++|+|++-
T Consensus 1 vLFVC~-~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~~g~~~~~~a~~~l~~~Gid~~~~~~~l~~~~~~~~DlIv~m 78 (140)
T smart00226 1 ILFVCT-GNICRSPMAEALFKAIVGDRVKIDSAGTGAWVGGGADPRAVEVLKEHGIALSHHASQLTSSDFKNADLVLAM 78 (140)
T ss_pred CEEEeC-ChhhhHHHHHHHHHHhcCCCEEEEcCcccCCCCCCCCHHHHHHHHHcCcCccceeccCCHHHHHhCCEEEEe
Confidence 356664 77888854 3322 223 555555432 55678888888888884210111121 3568899999986
No 494
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=41.84 E-value=93 Score=26.91 Aligned_cols=65 Identities=17% Similarity=0.096 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC
Q 024871 88 PCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI 157 (261)
Q Consensus 88 PtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~ 157 (261)
|+..+...+.+.+..+-.+|.+|.+.|..+.+.+..+..+..+|.+++..+.. ++-.+.+++.|.
T Consensus 118 ~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~-----~~~~~~~~~~g~ 182 (320)
T cd05286 118 LLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSS-----EEKAELARAAGA 182 (320)
T ss_pred cchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCC-----HHHHHHHHHCCC
Confidence 44445555555554444578999999987889999999999999987766532 233455666664
No 495
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=41.82 E-value=1.5e+02 Score=28.77 Aligned_cols=75 Identities=12% Similarity=0.062 Sum_probs=47.2
Q ss_pred HHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 100 EHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 100 e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
+...-+++++|.++| .+.+..|.+..+...|..+++.-.+. . ...+.+.+.|+ .+....+..+-+.++|+|+..
T Consensus 8 ~~~~~~~~~~v~v~G-~G~sG~a~a~~L~~~G~~V~~~D~~~---~-~~~~~l~~~gi-~~~~~~~~~~~~~~~d~vV~S 81 (473)
T PRK00141 8 SALPQELSGRVLVAG-AGVSGRGIAAMLSELGCDVVVADDNE---T-ARHKLIEVTGV-ADISTAEASDQLDSFSLVVTS 81 (473)
T ss_pred hhcccccCCeEEEEc-cCHHHHHHHHHHHHCCCEEEEECCCh---H-HHHHHHHhcCc-EEEeCCCchhHhcCCCEEEeC
Confidence 444557889999999 46677899999999999877665321 1 11222344563 333332334457788988775
Q ss_pred c
Q 024871 180 V 180 (261)
Q Consensus 180 ~ 180 (261)
+
T Consensus 82 p 82 (473)
T PRK00141 82 P 82 (473)
T ss_pred C
Confidence 4
No 496
>PRK05246 glutathione synthetase; Provisional
Probab=41.52 E-value=28 Score=31.86 Aligned_cols=73 Identities=22% Similarity=0.237 Sum_probs=44.1
Q ss_pred CCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCC--------CHHH-HH----------HHHhhhccEEEEeeCCcc--
Q 024871 7 KPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKRE--------ETRD-AA----------RVLCRYNDIIMARVFGHQ-- 65 (261)
Q Consensus 7 ~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgE--------s~~D-t~----------~~ls~~~D~iv~R~~~~~-- 65 (261)
+|+.-|-.....|+.+.|-.+.++++....+..+. ++.. .. .-++. .|++++|....-
T Consensus 15 ~~~~~st~~l~~aa~~~G~~v~~~~~~dl~~~~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~l~~-~D~v~~R~~~~~~~ 93 (316)
T PRK05246 15 NIKKDSTFAMMLEAQRRGHELFYYEPDDLSLRGGEVVARARPLTVRDDKGDWYELGEEQRLPLAD-FDVILMRKDPPFDM 93 (316)
T ss_pred CCCCChHHHHHHHHHHcCCEEEEEehhhcEEECCEEEEEEEEEEeccCCccceeccccccCcccc-CCEEEEcCCCCCCh
Confidence 34444445578899999999999999876654331 1111 00 11122 699999963321
Q ss_pred ------hHHHHhhhCCCcEEe
Q 024871 66 ------DILDLAKFATVPVIN 80 (261)
Q Consensus 66 ------~~~~~a~~~~vPVIN 80 (261)
.+.+..+..++||+|
T Consensus 94 ~~~~~~~~l~~le~~g~~v~N 114 (316)
T PRK05246 94 EYIYATYLLERAERPGTLVVN 114 (316)
T ss_pred HHHHHHHHHHHHHhCCCeEEC
Confidence 133444546899999
No 497
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=41.27 E-value=96 Score=31.71 Aligned_cols=75 Identities=16% Similarity=0.139 Sum_probs=44.2
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCC-----HHHHHHHHHhC-CCeEE-----EEcCHHHHhC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPD-----KETVEKARKAG-ISKIE-----ITNDPKEVVQ 171 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~-----~~~~~~~~~~g-~~~i~-----~~~d~~~a~~ 171 (261)
..+..||+++|.+ .+..|++..+...|+ +|..+-++.- +. .++.+.+++.+ ...++ ..+|+.+.++
T Consensus 126 ~qR~akVlVlG~G-g~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~~ 203 (637)
T TIGR03693 126 LSRNAKILAAGSG-DFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAFE 203 (637)
T ss_pred hhhcccEEEEecC-chHHHHHHHHHhcCCCcEEEEecccc-chhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhhc
Confidence 3577899999973 344444444445564 4544433322 22 24466777743 22233 2556788999
Q ss_pred CCCEEEEec
Q 024871 172 GADVVYSDV 180 (261)
Q Consensus 172 ~aDviy~~~ 180 (261)
+.|+|+...
T Consensus 204 ~~DiVi~vs 212 (637)
T TIGR03693 204 PADWVLYVS 212 (637)
T ss_pred CCcEEEEEC
Confidence 999988864
No 498
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=41.17 E-value=73 Score=29.14 Aligned_cols=78 Identities=23% Similarity=0.350 Sum_probs=48.2
Q ss_pred CCCCCcEEEEEcCC-CchHHH--HHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCe-------------EE---EE
Q 024871 103 GRLEGTKVVYVGDG-NNIVHS--WLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISK-------------IE---IT 163 (261)
Q Consensus 103 g~l~~~~i~~vGd~-~~v~~S--~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~-------------i~---~~ 163 (261)
+.+++.+|.|++|. +-+.-. +++-...++.+++++-=.+=-+.+-.++-+++.|... +- .+
T Consensus 147 ~~l~~a~VlYl~DNaGEi~FD~vlie~ik~~~~~vv~vVrg~PIlnDaT~EDak~~~i~~i~~vittG~~~vGi~l~d~s 226 (285)
T COG1578 147 ELLKNASVLYLTDNAGEIVFDKVLIEVIKELGKKVVVVVRGGPILNDATMEDAKEAGIDEIAKVITTGSDIVGIWLEDVS 226 (285)
T ss_pred HHhccCcEEEEecCCccHHHHHHHHHHHHhcCCceEEEEcCCceechhhHHHHHHcCcchhheeecCCCCcceeeHHhcc
Confidence 45777799999996 334444 4556777888777664322223455556666554210 11 13
Q ss_pred cCHHHHhCCCCEEEEec
Q 024871 164 NDPKEVVQGADVVYSDV 180 (261)
Q Consensus 164 ~d~~~a~~~aDviy~~~ 180 (261)
+...++++++|+|+...
T Consensus 227 ~Ef~~~f~~adlIIaKG 243 (285)
T COG1578 227 EEFREAFESADLIIAKG 243 (285)
T ss_pred HHHHHHhccCCEEEecC
Confidence 33567899999999983
No 499
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=41.01 E-value=52 Score=32.10 Aligned_cols=45 Identities=22% Similarity=0.224 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHhhh--cc-EEEEeeC---------CcchHHHHhhhCCCcEEeCCCC
Q 024871 40 REETRDAARVLCRY--ND-IIMARVF---------GHQDILDLAKFATVPVINGLTD 84 (261)
Q Consensus 40 gEs~~Dt~~~ls~~--~D-~iv~R~~---------~~~~~~~~a~~~~vPVINa~~~ 84 (261)
++++...++.+++. +| +||.|.. +++.+....-.+.+|||.|-|+
T Consensus 178 ~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvISAVGH 234 (440)
T COG1570 178 AEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVISAVGH 234 (440)
T ss_pred HHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCCCCeEeeccc
Confidence 34555555555555 56 6677863 3444555556789999998653
No 500
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.00 E-value=1.3e+02 Score=25.21 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=27.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEe
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCA 137 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~ 137 (261)
+.++++.++|..+.+..+++..+..-|.+++..
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~ 35 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIA 35 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 678899999987889999988777779888776
Done!