RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 024871
(261 letters)
>gnl|CDD|177976 PLN02342, PLN02342, ornithine carbamoyltransferase.
Length = 348
Score = 564 bits (1455), Expect = 0.0
Identities = 225/261 (86%), Positives = 246/261 (94%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
M+MIF KPSMRTRVSFETGF LLGGHA+YLGPDDIQ+GKREETRD ARVL RYNDIIMAR
Sbjct: 88 MAMIFTKPSMRTRVSFETGFFLLGGHALYLGPDDIQLGKREETRDIARVLSRYNDIIMAR 147
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
VF HQD+LDLA++++VPVINGLTDYNHPCQIMADALTIIEH+GRLEGTKVVYVGDGNNIV
Sbjct: 148 VFAHQDVLDLAEYSSVPVINGLTDYNHPCQIMADALTIIEHIGRLEGTKVVYVGDGNNIV 207
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180
HSWLL+A+V+PFHFVCACPKG+EPD +TVEKAR AGISKIEITNDP E V+GADVVY+DV
Sbjct: 208 HSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDV 267
Query: 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240
WASMGQKEEA RK+AFQGFQV+E LMKLAGP+AYFMHCLPAERGVEVT+GV+EAP SIV
Sbjct: 268 WASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCLPAERGVEVTDGVMEAPNSIV 327
Query: 241 FPQAENRMHAQNAIMLHALGL 261
FPQAENRMHAQNAIMLH LG
Sbjct: 328 FPQAENRMHAQNAIMLHQLGK 348
>gnl|CDD|234835 PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional.
Length = 304
Score = 431 bits (1110), Expect = e-154
Identities = 152/257 (59%), Positives = 189/257 (73%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
MIF KPS RTRVSFE G + LGGHAI+L P D Q+G+ E D ARVL RY D IM R F
Sbjct: 48 MIFEKPSTRTRVSFEVGMAQLGGHAIFLSPRDTQLGRGEPIEDTARVLSRYVDAIMIRTF 107
Query: 63 GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHS 122
H+ + +LA+++TVPVINGLTD +HPCQI+AD LTI EH G L+G KV +VGDGNN+ +S
Sbjct: 108 EHETLEELAEYSTVPVINGLTDLSHPCQILADLLTIYEHRGSLKGLKVAWVGDGNNVANS 167
Query: 123 WLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWA 182
LL A+++ F A PKG+EPD E VEK K + IE+T+DPKE V+GADVVY+DVW
Sbjct: 168 LLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWV 227
Query: 183 SMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFP 242
SMGQ+ EA R +AF +QV+E LM LA P A FMHCLPA RG EVT+ VI+ P S+V+
Sbjct: 228 SMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCLPAHRGEEVTDEVIDGPQSVVWD 287
Query: 243 QAENRMHAQNAIMLHAL 259
+AENR+HAQ A++ L
Sbjct: 288 EAENRLHAQKALLAWLL 304
>gnl|CDD|223156 COG0078, ArgF, Ornithine carbamoyltransferase [Amino acid transport
and metabolism].
Length = 310
Score = 391 bits (1008), Expect = e-138
Identities = 147/262 (56%), Positives = 183/262 (69%), Gaps = 4/262 (1%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
+IF K S RTRVSFE + LGGHAIYLGP D Q+G+ E +D ARVL R D IM R F
Sbjct: 49 LIFEKTSTRTRVSFEVAATQLGGHAIYLGPGDSQLGRGESIKDTARVLSRMVDAIMIRGF 108
Query: 63 GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHS 122
H+ + +LAK++ VPVINGLTD HPCQ +AD +TI EH G L+G K+ YVGDGNN+ +S
Sbjct: 109 SHETLEELAKYSGVPVINGLTDEFHPCQALADLMTIKEHFGSLKGLKLAYVGDGNNVANS 168
Query: 123 WLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIEITNDPKEVVQGADVVYSD 179
LL A+ + A PKG+EPD E VEKA++ KI +T DP+E V+GADVVY+D
Sbjct: 169 LLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTD 228
Query: 180 VWASMGQKEEAAYRKQAFQ-GFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYS 238
VW SMG++ EA R+ AF +QV+E LM LAGP A FMHCLPA RG EVT+ V E P S
Sbjct: 229 VWVSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHCLPAHRGEEVTDEVFEGPAS 288
Query: 239 IVFPQAENRMHAQNAIMLHALG 260
+VF +AENR+H Q A++ LG
Sbjct: 289 VVFDEAENRLHTQKAVLAALLG 310
>gnl|CDD|129743 TIGR00658, orni_carb_tr, ornithine carbamoyltransferase. This
family of ornithine carbamoyltransferases (OTCase) is in
a superfamily with the related enzyme aspartate
carbamoyltransferase. Most known examples are anabolic,
playing a role in arginine biosynthesis, but some are
catabolic. Most OTCases are homotrimers, but the
homotrimers are organized into dodecamers built from
four trimers in at least two species; the catabolic
OTCase of Pseudomonas aeruginosa is allosterically
regulated, while OTCase of the extreme thermophile
Pyrococcus furiosus shows both allostery and thermophily
[Amino acid biosynthesis, Glutamate family].
Length = 304
Score = 357 bits (917), Expect = e-125
Identities = 147/263 (55%), Positives = 197/263 (74%), Gaps = 3/263 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+++IF KPS RTRVSFE LGGH +YL P+D+Q+G+ E +D ARVL RY D IMAR
Sbjct: 42 LALIFEKPSTRTRVSFEVAAYQLGGHPLYLNPNDLQLGRGESIKDTARVLSRYVDGIMAR 101
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
V+ H+D+ +LAK+A+VPVINGLTD HPCQ +AD LTIIEH G+L+G KVVYVGDGNN+
Sbjct: 102 VYKHEDVEELAKYASVPVINGLTDLFHPCQALADLLTIIEHFGKLKGVKVVYVGDGNNVC 161
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARK---AGISKIEITNDPKEVVQGADVVY 177
+S +L + + V A P+G+EPD + V+KA++ +E+T+DP E V+GADV+Y
Sbjct: 162 NSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIY 221
Query: 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPY 237
+DVW SMG++++ R + F+ +QV+E LM+LA P+ FMHCLPA RG EVT+ VIE P+
Sbjct: 222 TDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCLPAHRGEEVTDEVIEGPH 281
Query: 238 SIVFPQAENRMHAQNAIMLHALG 260
SIVF QAENR+HAQ A+M+ LG
Sbjct: 282 SIVFDQAENRLHAQKAVMVALLG 304
>gnl|CDD|179366 PRK02102, PRK02102, ornithine carbamoyltransferase; Validated.
Length = 331
Score = 327 bits (840), Expect = e-113
Identities = 126/283 (44%), Positives = 172/283 (60%), Gaps = 24/283 (8%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+++IF K S RTR +FE LG H YLGP+D Q+GK+E D ARVL R D I R
Sbjct: 49 IALIFEKTSTRTRCAFEVAAIDLGAHVTYLGPNDSQLGKKESIEDTARVLGRMYDGIEYR 108
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG-NNI 119
F + + +LAK++ VPV NGLTD HP Q++AD +T+ EH G L+G K+ YVGDG NN+
Sbjct: 109 GFKQEIVEELAKYSGVPVWNGLTDEWHPTQMLADFMTMKEHFGPLKGLKLAYVGDGRNNM 168
Query: 120 VHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK----AGISKIEITNDPKEVVQGADV 175
+S ++ + + PK P++E V AR+ G +KI IT DP+E V+GADV
Sbjct: 169 ANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETG-AKITITEDPEEAVKGADV 227
Query: 176 VYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAG-PKAYFMHCLPAE----------- 223
+Y+DVW SMG+++E R + + +QV+ LMK G P FMHCLPA
Sbjct: 228 IYTDVWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCLPAFHDTETKVGKEI 287
Query: 224 ------RGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
+G+EVT+ V E+ YSIVF +AENRMH A+M+ LG
Sbjct: 288 AEKYGLKGLEVTDEVFESKYSIVFDEAENRMHTIKAVMVATLG 330
>gnl|CDD|235017 PRK02255, PRK02255, putrescine carbamoyltransferase; Provisional.
Length = 338
Score = 298 bits (765), Expect = e-101
Identities = 123/261 (47%), Positives = 164/261 (62%), Gaps = 8/261 (3%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
MIF + S RTRVSFET + LGGHA YL P IQ+G E D ARVL R DIIMARV
Sbjct: 47 MIFEQSSTRTRVSFETAMTQLGGHAQYLAPGQIQLGGHESLEDTARVLSRLVDIIMARVD 106
Query: 63 GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHV---GRLEGTKVVYVGDGNNI 119
HQ +++LAK+ATVPVING++DYNHP Q + D T+IEH+ +LE KVV+VGD +
Sbjct: 107 RHQTVVELAKYATVPVINGMSDYNHPTQELGDLFTMIEHLPEGKKLEDCKVVFVGDATQV 166
Query: 120 VHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK-AGIS--KIEITNDPKEVVQGADVV 176
S + +A+ + FV PKG++ +E + A + +S + +T+D E V+ AD V
Sbjct: 167 CVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFV 226
Query: 177 YSDVWASM-GQKEEAAYRKQAFQ-GFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIE 234
Y+DVW + + R F +QV LM AGP A FMHCLPA RG EVT+ V++
Sbjct: 227 YTDVWYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCLPATRGEEVTDEVMD 286
Query: 235 APYSIVFPQAENRMHAQNAIM 255
+P SI F +AENR+ A A++
Sbjct: 287 SPRSICFDEAENRLTAIRALL 307
>gnl|CDD|237819 PRK14805, PRK14805, ornithine carbamoyltransferase; Provisional.
Length = 302
Score = 291 bits (746), Expect = 4e-99
Identities = 118/262 (45%), Positives = 160/262 (61%), Gaps = 7/262 (2%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
M+F KPS+RTRVSF+ G + LGGH +YL + +GKRE D A L + D I+ARVF
Sbjct: 43 MLFEKPSLRTRVSFDIGINKLGGHCLYLDQQNGALGKRESVADFAANLSCWADAIVARVF 102
Query: 63 GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHS 122
H I LA+ +VPVIN L D HPCQ +AD LT+ E G + K+ YVGDGNN+ HS
Sbjct: 103 SHSTIEQLAEHGSVPVINALCDLYHPCQALADFLTLAEQFGDVSKVKLAYVGDGNNVTHS 162
Query: 123 WLLMASVIPFHFVCACPKGFEPDKETV----EKARKAGISKIEITNDPKEVVQGADVVYS 178
+ A+++ CP G PD + V E A K+G K+ +T+D E ++G D +Y+
Sbjct: 163 LMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSG-GKLVLTSD-IEAIEGHDAIYT 220
Query: 179 DVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYS 238
D W SMG A K F +QV++ LM+ AG + MHC PA RGVE+T V++ S
Sbjct: 221 DTWISMGDDTPLAEIKAKFAPYQVNKALMEKAGAT-FVMHCQPAHRGVEITSEVMDGEGS 279
Query: 239 IVFPQAENRMHAQNAIMLHALG 260
++ QAENRMHAQNA+++ L
Sbjct: 280 LILQQAENRMHAQNAVLVTLLS 301
>gnl|CDD|235269 PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional.
Length = 332
Score = 248 bits (636), Expect = 6e-82
Identities = 116/285 (40%), Positives = 164/285 (57%), Gaps = 26/285 (9%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+++IF K S RTR +FE G H YLGP QMGK+E T+D ARVL D I R
Sbjct: 48 IALIFEKDSTRTRCAFEVAAYDQGAHVTYLGPTGSQMGKKESTKDTARVLGGMYDGIEYR 107
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHV-GRLEGTKVVYVGDG-NN 118
F + + LA+++ VPV NGLTD +HP Q++AD LT EH+ + K YVGDG NN
Sbjct: 108 GFSQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEHLKKPYKDIKFTYVGDGRNN 167
Query: 119 IVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR----KAGISKIEITNDPKEVVQGAD 174
+ ++ + A+++ F CPK PD E + K + + G KI IT+D E V+G+D
Sbjct: 168 VANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETG-GKITITDDIDEGVKGSD 226
Query: 175 VVYSDVWASMGQKEEA-AYRKQAFQGFQVDEFLMKLAG-PKAYFMHCLPA---------- 222
V+Y+DVW SMG+ +E R + + +QV++ +MK G P A F HCLP+
Sbjct: 227 VIYTDVWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCLPSFHDLDTKVGK 286
Query: 223 -------ERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
+ +EVT+ V E+ S+VF +AENRMH A+M+ LG
Sbjct: 287 EIFEKYGLKEMEVTDEVFESKASVVFDEAENRMHTIKAVMVATLG 331
>gnl|CDD|179587 PRK03515, PRK03515, ornithine carbamoyltransferase subunit I;
Provisional.
Length = 336
Score = 209 bits (535), Expect = 9e-67
Identities = 109/283 (38%), Positives = 150/283 (53%), Gaps = 26/283 (9%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
+IF K S RTR SFE G YLGP Q+G +E +D ARVL R D I R +
Sbjct: 50 LIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGY 109
Query: 63 GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHV--GRLEGTKVVYVGDG-NNI 119
G + + LA++A VPV NGLT+ HP Q++AD LT+ EH+ + Y GD NN+
Sbjct: 110 GQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARNNM 169
Query: 120 VHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGIS---KIEITNDPKEVVQGADVV 176
+S L A++ PK P+ V + R I +T D E V+GAD +
Sbjct: 170 GNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFI 229
Query: 177 YSDVWASMGQKEEA-AYRKQAFQGFQVDEFLMKLAG-PKAYFMHCLPA------------ 222
Y+DVW SMG+ +E A R + +QV+ +M+L G P+ F+HCLPA
Sbjct: 230 YTDVWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCLPAFHDDQTTLGKKM 289
Query: 223 ------ERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHAL 259
G+EVT+ V E+ +SIVF QAENR+H A+M+ L
Sbjct: 290 AEEYGLHGGMEVTDEVFESAHSIVFDQAENRLHTIKAVMVATL 332
>gnl|CDD|167263 PRK01713, PRK01713, ornithine carbamoyltransferase; Provisional.
Length = 334
Score = 197 bits (502), Expect = 6e-62
Identities = 112/286 (39%), Positives = 157/286 (54%), Gaps = 28/286 (9%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+++IF K S RTR +FE G Y+ P+ Q+G +E +D ARVL R D I R
Sbjct: 49 IALIFEKTSTRTRCAFEVAAYDQGAQVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYR 108
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGR-LEGTKVVYVGDG-NN 118
F + +LA++A VPV NGLTD HP Q++AD LT+IE+ + L VY+GD NN
Sbjct: 109 GFKQSIVNELAEYAGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARNN 168
Query: 119 IVHSWLLMASVIPFHFVCACPKGFEPDKETVEK----ARKAGISKIEITNDPKEVVQGAD 174
+ +S LL+ + + PK P+ VE A+++G ++I +T+D + V+G D
Sbjct: 169 MGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESG-ARITVTDDIDKAVKGVD 227
Query: 175 VVYSDVWASMGQKEEA-AYRKQAFQGFQVDEFLMKLAG-PKAYFMHCLPA---------- 222
V++DVW SMG+ E R + +QV LMK G PK FMHCLPA
Sbjct: 228 FVHTDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCLPAFHNSETKVGR 287
Query: 223 ---------ERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHAL 259
G+EVTE V E+P +I F QAENRMH A+M+ +L
Sbjct: 288 QIAEKYPELANGIEVTEDVFESPMNIAFEQAENRMHTIKAVMVASL 333
>gnl|CDD|105755 PRK12562, PRK12562, ornithine carbamoyltransferase subunit F;
Provisional.
Length = 334
Score = 186 bits (473), Expect = 1e-57
Identities = 116/287 (40%), Positives = 158/287 (55%), Gaps = 28/287 (9%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+++IF K S RTR SFE G YLGP Q+G +E +D ARVL R D I R
Sbjct: 48 IALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYR 107
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHV-GR-LEGTKVVYVGDG-N 117
G + + LA++A VPV NGLT+ HP Q++AD LT+ EH+ G+ +VY GD N
Sbjct: 108 GHGQEVVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARN 167
Query: 118 NIVHSWLLMASVIPFHFVCACPKGFEPDKETVEK----ARKAGISKIEITNDPKEVVQGA 173
N+ +S L A++ P+ P+ V + A+K G KI +T D V+GA
Sbjct: 168 NMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHG-GKITLTEDIAAGVKGA 226
Query: 174 DVVYSDVWASMGQ-KEEAAYRKQAFQGFQVDEFLMKLAG-PKAYFMHCLPA--------- 222
D +Y+DVW SMG+ KE+ A R +G+QV+ +M L G P+ F+HCLPA
Sbjct: 227 DFIYTDVWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCLPAFHDDQTTLG 286
Query: 223 ---------ERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
G+EVT+ V E+P SIVF QAENRMH A+M+ L
Sbjct: 287 KKMAKEFGLHGGMEVTDEVFESPASIVFDQAENRMHTIKAVMVATLA 333
>gnl|CDD|215776 pfam00185, OTCace, Aspartate/ornithine carbamoyltransferase,
Asp/Orn binding domain.
Length = 156
Score = 175 bits (447), Expect = 1e-55
Identities = 61/159 (38%), Positives = 92/159 (57%), Gaps = 11/159 (6%)
Query: 106 EGTKVVYVGDG--NNIVHSWLLMASVIPFHFVCACPKG-FEPDKETVEKARKAGISK--- 159
+G KV VGDG N + HS +L + V PKG + PD E ++KA+K +
Sbjct: 1 DGLKVAIVGDGKHNRVAHSLILALAKFGMEVVLVAPKGLYPPDPELLDKAKKEALKSGGI 60
Query: 160 -IEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMH 218
I +T+D +E ++GADVVY+D W ++ ++ + +QV E L+K A P A FMH
Sbjct: 61 TITVTDDLEEALKGADVVYTDRWQKEREERLEKFKPR----YQVTEELLKKAKPDAIFMH 116
Query: 219 CLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLH 257
LPA RG E+T+ V + P S++F QAEN +H + A++
Sbjct: 117 PLPAHRGEEITDDVDDGPRSVIFDQAENGLHVRMALLAL 155
>gnl|CDD|235304 PRK04523, PRK04523, N-acetylornithine carbamoyltransferase;
Reviewed.
Length = 335
Score = 177 bits (450), Expect = 5e-54
Identities = 106/290 (36%), Positives = 143/290 (49%), Gaps = 40/290 (13%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGP----------DDIQM-GKREE-TRDAARVL 50
++F PS+RTR SFE G LGGHA+ L P M G+ EE R+ ARVL
Sbjct: 43 LVFFNPSLRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFELGAVMDGETEEHIREVARVL 102
Query: 51 CRYNDIIMARVFG--------HQDIL--DLAKFATVPVINGLTDYNHPCQIMADALTIIE 100
RY D+I R F QD + AK++TVPVIN T HPCQ +A AL + E
Sbjct: 103 SRYVDLIGVRAFPKFVDWSKDRQDQVLNSFAKYSTVPVINMETIT-HPCQELAHALALQE 161
Query: 101 HVGR-LEGTKVV-----YVGDGNNIV-HSWLLMASVIPFHFVCACPK-GFEPDKETVEKA 152
H G L G K V + N V +S LL+A+ + CP + D+ ++ A
Sbjct: 162 HFGTTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWA 221
Query: 153 R---KAGISKIEITNDPKEVVQGADVVYSDVWASM----GQKEEAAYRKQAFQGFQVDEF 205
+ +++D GADVVY+ W ++ + E R Q +Q F VDE
Sbjct: 222 EQNAAESGGSLTVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQ-YQHFIVDER 280
Query: 206 LMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIM 255
M L F HCLP R V+VT+ V+++P I +AENR+H Q AIM
Sbjct: 281 KMALTN-NGVFSHCLPLRRNVKVTDAVMDSPNCIAIDEAENRLHVQKAIM 329
>gnl|CDD|217204 pfam02729, OTCace_N, Aspartate/ornithine carbamoyltransferase,
carbamoyl-P binding domain.
Length = 140
Score = 164 bits (417), Expect = 2e-51
Identities = 49/101 (48%), Positives = 65/101 (64%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++++F +PS RTR+SFE LGGH IYL +GK E +D ARVL RY D I+ R
Sbjct: 40 LALLFFEPSTRTRLSFEAAAKRLGGHVIYLDASSSSLGKGESLKDTARVLSRYVDAIVIR 99
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEH 101
H + +LAK+++VPVIN D+ HP Q +AD LTI EH
Sbjct: 100 HPSHGALEELAKYSSVPVINAGDDHEHPTQALADLLTIKEH 140
>gnl|CDD|173265 PRK14804, PRK14804, ornithine carbamoyltransferase; Provisional.
Length = 311
Score = 166 bits (421), Expect = 5e-50
Identities = 94/272 (34%), Positives = 141/272 (51%), Gaps = 21/272 (7%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRD---AARVLCRYNDII 57
++M+F K S RTRVSFE + +GGH IYL M + D AR L R +I
Sbjct: 46 LAMLFQKTSTRTRVSFEVAMTEMGGHGIYLD----WMASNFQLSDIDLEARYLSRNVSVI 101
Query: 58 MARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGR--LEGTKVVYVGD 115
MAR+ H+D+L + + VPVING + HPCQ +AD +TI L ++ Y+G
Sbjct: 102 MARLKKHEDLLVMKNGSQVPVINGCDNMFHPCQSLADIMTIALDSPEIPLNQKQLTYIGV 161
Query: 116 GNNIVHSWLLMASVIPFHFVCACPKGFEPD--KETVEKARKAGISKIEITNDPKEVVQGA 173
NN+V+S + + + + H P + + +TVE+A+K G E + + V A
Sbjct: 162 HNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWE--MNLHKAVSHA 219
Query: 174 DVVYSDVWASMGQKEEAAY------RKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVE 227
D VY+D W M + +Y R + +Q++ LM+ A MH +P G E
Sbjct: 220 DYVYTDTWLDMEFFNDPSYADKKKQRMELMMPYQINSSLMEKT--NAKVMHDMPIHAGYE 277
Query: 228 VTEGVIEAPYSIVFPQAENRMHAQNAIMLHAL 259
+T V+ + SI+F QAENR+ AQ A++L L
Sbjct: 278 ITREVVLSDRSIIFQQAENRLDAQKAVILKLL 309
>gnl|CDD|213796 TIGR03316, ygeW, probable carbamoyltransferase YgeW. Members of
this protein family include the ygeW gene product of
Escherichia coli. The function is unknown. Members show
homology to ornithine carbamoyltransferase (TIGR00658)
and aspartate carbamoyltransferase
(carbamoyltransferase), and therefore may belong to the
carbamoyltransferases in function. Members often are
found in a large, conserved genomic region associated
with purine catabolism.
Length = 357
Score = 133 bits (336), Expect = 4e-37
Identities = 74/315 (23%), Positives = 115/315 (36%), Gaps = 67/315 (21%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDII----- 57
+F S RTR SF + +LLG L Q+ E R+ A ++ D I
Sbjct: 47 SLFRDNSTRTRFSFASALNLLGLAQQDLDEGKSQIAHGETVRETANMISFCADAIGIRDD 106
Query: 58 MARVFGHQDILDLAKFAT-----------VPVINGLTDYNHPCQIMADALTIIEHVGRLE 106
M G+ + ++ ++N D +HP Q MAD + EH G LE
Sbjct: 107 MYLGAGNAYMREVGAALDDGYKQGVLPQRPALVNLQCDIDHPTQAMADLAWLREHFGSLE 166
Query: 107 GTKVVYVGDGNNIVHSW----------------LLMASVIPFHFVCACPKGFEPDKETVE 150
K G I +W + + + A P+G++ E VE
Sbjct: 167 NLK------GKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLIPEVVE 220
Query: 151 KARKAGIS---KIEITNDPKEVVQGADVVYSDVWASMGQKE------------------- 188
A+K N +E + AD+VY WA E
Sbjct: 221 VAKKNAAESGGSFRQVNSMEEAFKDADIVYPKSWAPYAVMEKRTELYRANDHEGLKALEK 280
Query: 189 EAAYRKQAFQGFQVDEFLMKLA-GPKAYFMHCLPAE-RGV-----EVTEGVIEAPYSIVF 241
+ + + + E M+L +A +MHCLPA+ GV EVTEGV + +
Sbjct: 281 QCLAQNAKHKDWHCTEERMELTRDGEALYMHCLPADISGVSCKEGEVTEGVFDKYRIATY 340
Query: 242 PQAENRMHAQNAIML 256
+A + + A++L
Sbjct: 341 KEASWKPYIIAAMIL 355
>gnl|CDD|223614 COG0540, PyrB, Aspartate carbamoyltransferase, catalytic chain
[Nucleotide transport and metabolism].
Length = 316
Score = 120 bits (302), Expect = 3e-32
Identities = 87/279 (31%), Positives = 130/279 (46%), Gaps = 34/279 (12%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYN-DIIMA 59
++ +F +PS RTR+SFET LG + + K E D R L Y D I+
Sbjct: 49 VANLFFEPSTRTRLSFETAMKRLGADVVNFSDSESSSKKGETLADTIRTLSAYGVDAIVI 108
Query: 60 RVFGHQD---ILDLAKFATV-PVINGLTD--YNHPCQIMADALTIIEHVGRLEGTKVVYV 113
R H + LA+F+ V PVIN D + HP Q + D TI E GRL+G K+ V
Sbjct: 109 R---HPEEGAARLLAEFSGVNPVINA-GDGSHQHPTQALLDLYTIREEFGRLDGLKIAIV 164
Query: 114 GDGNN--IVHS--WLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEV 169
GD + + HS L + V P+ P + +E+ + G + + +EV
Sbjct: 165 GDLKHSRVAHSNIQALKRFGAEVYLVS--PETLLPPEYILEELEEKGG-VVVEHDSDEEV 221
Query: 170 VQGADVVYSDVWASMG--QKE------EAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221
++ ADV+Y M QKE E + K+ ++ + + L +LA P A MH LP
Sbjct: 222 IEEADVLY------MLRVQKERFNDPEEYSKVKEYYKLYGLT--LERLAKPDAIVMHPLP 273
Query: 222 AERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
R VE+ V + P S F Q +N + + A++ LG
Sbjct: 274 VNRVVEIASEVDDTPQSRYFQQVKNGVAVRMALLELLLG 312
>gnl|CDD|234849 PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit;
Provisional.
Length = 305
Score = 116 bits (294), Expect = 4e-31
Identities = 91/285 (31%), Positives = 119/285 (41%), Gaps = 61/285 (21%)
Query: 4 IFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYN-DIIMARVF 62
+F +PS RTR+SFE LG I + K E D R L D I+ R
Sbjct: 51 LFFEPSTRTRLSFELAAKRLGADVINFSASTSSVSKGETLADTIRTLSAMGADAIVIR-- 108
Query: 63 GHQD---ILDLAKFATVPVINGLTD--YNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN 117
H LA+ + VPVIN D + HP Q + D LTI E GRLEG KV VGD
Sbjct: 109 -HPQSGAARLLAESSDVPVINA-GDGSHQHPTQALLDLLTIREEFGRLEGLKVAIVGD-- 164
Query: 118 NIVHS-------WLLM---ASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPK 167
I HS L A V + A P P+ G+ + + D
Sbjct: 165 -IKHSRVARSNIQALTRLGAEV----RLIA-PPTLLPE----------GMPEYGVHTDLD 208
Query: 168 EVVQGADVVYSDVWASMG--QKE------EAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC 219
EV++ ADVV M QKE +Y + + + + + LA P A MH
Sbjct: 209 EVIEDADVVM------MLRVQKERMDGGLLPSYEE-YKRSYGLTAERLALAKPDAIVMHP 261
Query: 220 LPAERGVEVTEGVIEAPYSIVFPQAEN----RMHAQNAIMLHALG 260
P RGVE+ V + P S++F Q N RM A++ LG
Sbjct: 262 GPVNRGVEIASDVADGPQSVIFEQVTNGVAVRM----AVLELLLG 302
>gnl|CDD|233083 TIGR00670, asp_carb_tr, aspartate carbamoyltransferase. Aspartate
transcarbamylase (ATCase) is an alternate name.PyrB
encodes the catalytic chain of aspartate
carbamoyltransferase, an enzyme of pyrimidine
biosynthesis, which organizes into trimers. In some
species, including E. coli and the Archaea but excluding
Bacillus subtilis, a regulatory subunit PyrI is also
present in an allosterically regulated hexameric
holoenzyme. Several molecular weight classes of ATCase
are described in MEDLINE:96303527 and often vary within
taxa. PyrB and PyrI are fused in Thermotoga
maritima.Ornithine carbamoyltransferases are in the same
superfamily and form an outgroup [Purines, pyrimidines,
nucleosides, and nucleotides, Pyrimidine ribonucleotide
biosynthesis].
Length = 301
Score = 106 bits (267), Expect = 2e-27
Identities = 81/261 (31%), Positives = 112/261 (42%), Gaps = 26/261 (9%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYL-GPDDIQMGKREETRDAARVLCRYNDIIMARV 61
+F +PS RTR+SFET LGG + + + K E D + L Y D I+ R
Sbjct: 44 NLFFEPSTRTRLSFETAMKRLGGSVVNFSDSETSSVAKGETLADTIKTLSGYVDAIVIR- 102
Query: 62 FGHQDILD---LAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN 117
H A+ + VPVIN G HP Q + D TI E GRL+G K+ VGD
Sbjct: 103 --HPLEGAARLAAEVSEVPVINAGDGSNQHPTQTLLDLYTIYEEFGRLDGLKIALVGDLK 160
Query: 118 N--IVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADV 175
VHS + P+ KE +E+ + GI K+ T +EV+ ADV
Sbjct: 161 YGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGI-KVRETESLEEVIDEADV 219
Query: 176 VYSDVWASMGQKE----EAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEG 231
+Y + QKE Y K + + ++ A MH LP R E+
Sbjct: 220 LYV----TRIQKERFPDPEEYEKVKGS-YGITLERLEAAKKGVIIMHPLP--RVDEIDPS 272
Query: 232 VIEAPYSIVFPQAEN----RM 248
V + P++ F QA N RM
Sbjct: 273 VDDTPHAKYFKQAFNGVPVRM 293
>gnl|CDD|178142 PLN02527, PLN02527, aspartate carbamoyltransferase.
Length = 306
Score = 97.5 bits (243), Expect = 7e-24
Identities = 80/267 (29%), Positives = 122/267 (45%), Gaps = 21/267 (7%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYL-GPDDIQMGKREET-RDAARVLCRYNDIIM 58
M+ +F +PS RTR+SFE+ LGG + + + ET D R + Y+DII+
Sbjct: 42 MATLFYEPSTRTRLSFESAMKRLGGEVLTTENAGEFSSAAKGETLEDTIRTVEGYSDIIV 101
Query: 59 ARVFGHQDILDLAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN 117
R F A A +PVIN G HP Q + D TI +GRL+G KV VGD
Sbjct: 102 LRHFESGAARRAAATAEIPVINAGDGPGQHPTQALLDVYTIQREIGRLDGIKVGLVGDLA 161
Query: 118 N--IVHSWLLMASV---IPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQG 172
N V S + + + +FV P + + + G+ + E ++D EV
Sbjct: 162 NGRTVRSLAYLLAKYEDVKIYFV--APDVVKMKDDIKDYLTSKGV-EWEESSDLMEVASK 218
Query: 173 ADVVYSDVWASMGQKEEAAYRKQAFQG----FQVDEFLMKLAGPKAYFMHCLPAERGVEV 228
DV+Y + Q+E R ++ + VD+ +M + A MH LP R E+
Sbjct: 219 CDVLYQ----TRIQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPLP--RLDEI 272
Query: 229 TEGVIEAPYSIVFPQAENRMHAQNAIM 255
T V P + F QA+N + + A++
Sbjct: 273 TTDVDSDPRAAYFRQAKNGLFIRMALL 299
>gnl|CDD|169269 PRK08192, PRK08192, aspartate carbamoyltransferase; Provisional.
Length = 338
Score = 94.0 bits (234), Expect = 2e-22
Identities = 87/272 (31%), Positives = 122/272 (44%), Gaps = 39/272 (14%)
Query: 4 IFAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
+F +PS RTRVSF F+LLGGH G + K E D ARVL Y+D+I R
Sbjct: 50 LFFEPSTRTRVSFGCAFNLLGGHVRETTGMASSSLSKGESLYDTARVLSTYSDVIAMR-- 107
Query: 63 GHQDILDLAKFAT---VPVINGLTDYN-HPCQIMADALTI---IEHVGR-LEGTKVVYVG 114
H D + +FA VPVING N HP Q + D TI + H GR ++G + VG
Sbjct: 108 -HPDAGSVKEFAEGSRVPVINGGDGSNEHPTQALLDLFTIQKELAHAGRGIDGMHIAMVG 166
Query: 115 DGNN--IVHS---WLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEV 169
D VHS L M + F V PK + AG KI IT+ +
Sbjct: 167 DLKFGRTVHSLSRLLCMYKNVSFTLV--SPKELAMPDYVISDIENAG-HKITITDQLEGN 223
Query: 170 VQGADVVYS-----DVWASMGQKEEAAYRKQAFQGFQVDEFL-MKLAGPKAYFMHCLPAE 223
+ AD++Y + + S Q+E YR + F++++ + + MH LP +
Sbjct: 224 LDKADILYLTRIQEERFPS--QEEANKYRGK----FRLNQSIYTQHCKSNTVIMHPLPRD 277
Query: 224 RGVEVTE---GVIEAPYSIVFPQAEN----RM 248
+ E + P +F QA+N RM
Sbjct: 278 SRAQANELDNDLNSHPNLAIFRQADNGLLIRM 309
>gnl|CDD|183362 PRK11891, PRK11891, aspartate carbamoyltransferase; Provisional.
Length = 429
Score = 86.1 bits (213), Expect = 3e-19
Identities = 87/278 (31%), Positives = 124/278 (44%), Gaps = 30/278 (10%)
Query: 4 IFAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
+F + S RTRVSF F LGG G M K E D +RV+ Y D ++ R
Sbjct: 132 LFFEASTRTRVSFGAAFCRLGGSVCDTTGFTFSSMAKGESIYDTSRVMSGYVDALVIR-- 189
Query: 63 GHQDILDLAKFAT---VPVIN-GLTDYNHPCQIMADALTIIEHVGRLE----GTKVVYVG 114
H + +A+FA +PVIN G HP Q + D TI RL G + VG
Sbjct: 190 -HPEQGSVAEFARATNLPVINGGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIALVG 248
Query: 115 D--GNNIVHSWL-LMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQ 171
D VHS + L+A F P E VE+ + G IE T+D ++
Sbjct: 249 DLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNG-HVIEQTDDLAAGLR 307
Query: 172 GADVVYSDVWASMGQKEEAAYRKQAFQG----FQVDEFLMKLA-GPKAYFMHCLPAER-- 224
GADVVY A+ QKE A ++F+G FQ+++ L+ P MH LP +
Sbjct: 308 GADVVY----ATRIQKERFA--DESFEGYTPDFQINQALVDAVCKPDTLIMHPLPRDSRP 361
Query: 225 -GVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALGL 261
+++ + P +F Q +N + + AI LG+
Sbjct: 362 GANDLSTDLNRDPRLAIFRQTDNGIPVRMAIFAVLLGV 399
>gnl|CDD|235961 PRK07200, PRK07200, aspartate/ornithine carbamoyltransferase family
protein; Validated.
Length = 395
Score = 79.0 bits (195), Expect = 6e-17
Identities = 85/302 (28%), Positives = 115/302 (38%), Gaps = 87/302 (28%)
Query: 4 IFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKR-----EETRDAARVLCRYNDIIM 58
+F S RTR S+ + +LLG L D+ GK E R+ A ++ M
Sbjct: 65 VFRDNSTRTRFSYASACNLLG-----LEVQDLDEGKSQIAHGETVRETANMIS-----FM 114
Query: 59 ARVFGHQDILDLAKFATV---------------------PVINGLTDYNHPCQIMADALT 97
A V G +D + + K ++N D +HP Q MAD L
Sbjct: 115 ADVIGIRDDMYIGKGNAYMREVGAAVDDGYKQGVLPQRPTLVNLQCDIDHPTQSMADLLH 174
Query: 98 IIEHVGRLEGTKVVYVGDGNNIVHSWLLMASV-----IP-----------FHFVCACPKG 141
+IEH G LE K G I +W S +P A P+G
Sbjct: 175 LIEHFGGLENLK------GKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEG 228
Query: 142 FEPDKETVEKARK-AGIS--KIEITNDPKEVVQGADVVYSDVWASMGQKEEAA--YRKQA 196
++ E VE A+K A S N +E + AD+VY WA EE YR
Sbjct: 229 YDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDADIVYPKSWAPYKVMEERTELYRAGD 288
Query: 197 FQGFQV-----------------DEFLMKL-AGPKAYFMHCLPAE-RGV-----EVTEGV 232
+G + E +MKL KA +MHCLPA+ GV EVTE V
Sbjct: 289 HEGIKALEKELLAQNAQHKDWHCTEEMMKLTKDGKALYMHCLPADISGVSCKEGEVTESV 348
Query: 233 IE 234
+
Sbjct: 349 FD 350
>gnl|CDD|139876 PRK13814, pyrB, aspartate carbamoyltransferase catalytic subunit;
Provisional.
Length = 310
Score = 47.0 bits (111), Expect = 3e-06
Identities = 65/264 (24%), Positives = 110/264 (41%), Gaps = 27/264 (10%)
Query: 4 IFAKPSMRTRVSFETGFSLLGGHAIYLGPD--DIQMGKREETRDAARVLCRYN-DIIMAR 60
+F +PS RTR SFE LG A+ L P+ + K E D + L + R
Sbjct: 51 LFFEPSTRTRNSFEIAAKRLG--AMVLNPNLKISAISKGETLFDTIKTLEAMGVYFFIVR 108
Query: 61 VFGHQDILDLAK-FATVPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGD--- 115
++ +AK ++ VIN G ++ HP Q + D +TI +H V +GD
Sbjct: 109 HSENETPEQIAKQLSSGVVINAGDGNHQHPSQALIDLMTIKQHKPHWNKLCVTIIGDIRH 168
Query: 116 ---GNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQG 172
N+++ + M +P P PDK G I+ + K +
Sbjct: 169 SRVANSLMDGLVTMG--VP-EIRLVGPSSLLPDK--------VGNDSIKKFTELKPSLLN 217
Query: 173 ADVVYSDVWASMGQKEEAAYRKQAFQG-FQVDEFLMKLAGPKAYFMHCLPAERGVEVTEG 231
+DV+ + ++ + + AF+G F++ + A P A MH P R VE+
Sbjct: 218 SDVIVT--LRLQKERHDNSVDIDAFRGSFRLTPEKLYSAKPDAIVMHPGPVNREVEINSD 275
Query: 232 VIEAPYSIVFPQAENRMHAQNAIM 255
V + S++ Q N + + A++
Sbjct: 276 VADNQQSVILQQVRNGVAMRMAVL 299
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 32.0 bits (73), Expect = 0.32
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 8/80 (10%)
Query: 143 EPDKETVEKARKAGISKIEITNDP-KEVVQGADVVYSDVWASMGQKEEAAYR-----KQA 196
E ++V A G +I+I D K + A + + + + R K+A
Sbjct: 334 EEGLKSVRLADFYGNEEIKIELDKSKTPSENAQRYFK-KYKKLKGAKVNLDRQLSELKEA 392
Query: 197 FQGF-QVDEFLMKLAGPKAY 215
+ L K G KA
Sbjct: 393 IAYYESAKTALEKAEGKKAI 412
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 30.7 bits (70), Expect = 0.67
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 103 GRLEGTKVVYVGDGNNIVHSWLLMASVI--PFHFVCACPKGFEPDKETVEKARKAGISKI 160
G +G VV +G G++ V L S I V + F ++ VE+ +K ++
Sbjct: 139 GFFKGKDVVVIGGGDSAVE-EALYLSKIAKKVTLVHRRDE-FRAEEILVERLKKNVKIEV 196
Query: 161 EITNDPKEVVQGADV 175
KE++ G DV
Sbjct: 197 LTNTVVKEIL-GDDV 210
>gnl|CDD|234003 TIGR02768, TraA_Ti, Ti-type conjugative transfer relaxase TraA.
This protein contains domains distinctive of a single
strand exonuclease (N-terminus, MobA/MobL, pfam03389) as
well as a helicase domain (central region, homologous to
the corresponding region of the F-type relaxase TraI,
TIGR02760). This protein likely fills the same role as
TraI(F), nicking (at the oriT site) and unwinding the
coiled plasmid prior to conjugative transfer.
Length = 744
Score = 30.9 bits (70), Expect = 0.80
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 44 RDAARVLCRYND------IIMARVFGHQDILDLAKFAT 75
RD AR+L RY D +MARV ++ L T
Sbjct: 267 RDIARLLHRYIDDPQQFQQLMARVLASPQLVALGDPGT 304
>gnl|CDD|221543 pfam12351, Fig1, Ca2+ regulator and membrane fusion protein Fig1.
During the mating process of yeast cells, two Ca2+
influx pathways become activated. The resulting
elevation of cytosolic free Ca2+ activates downstream
signaling factors that promote long term survival of
unmated cells. Fig1 is a regulator of the low affinity
Ca2+ influx system (LACS), and is also required for
efficient membrane fusion during yeast mating.
Length = 185
Score = 28.5 bits (64), Expect = 2.7
Identities = 8/22 (36%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 117 NNIVHSWLLMASVIPFHFVCAC 138
+N+VH +LLMA+++ F+
Sbjct: 71 DNVVHPYLLMAAIV-LTFLSFL 91
>gnl|CDD|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum
calcium-translocating P-type ATPase. This model
describes the P-type ATPase responsible for
translocating calcium ions across the endoplasmic
reticulum membrane of eukaryotes , and is of particular
importance in the sarcoplasmic reticulum of skeletal and
cardiac muscle in vertebrates. These pumps transfer Ca2+
from the cytoplasm to the lumen of the endoplasmic
reticulum. In humans and mice, at least, there are
multiple isoforms of the SERCA pump with overlapping but
not redundant functions. Defects in SERCA isoforms are
associated with diseases in humans. The calcium P-type
ATPases have been characterized as Type IIA based on a
phylogenetic analysis which distinguishes this group
from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the latter of which is
modelled by TIGR01522 [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 917
Score = 28.6 bits (64), Expect = 4.0
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 146 KETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDE 204
+ +EK R AGI I IT D KE A+ + + E+ ++ +F G + DE
Sbjct: 543 ADAIEKCRTAGIRVIMITGDNKET---AEAICRRIGI-FSPDEDVTFK--SFTGREFDE 595
>gnl|CDD|131709 TIGR02661, MauD, methylamine dehydrogenase accessory protein MauD.
This protein, MauD, appears critical to proper formation
of the small subunit of methylamine dehydrogenase, which
has both an unusual tryptophan tryptophylquinone
cofactor and multiple disulfide bonds. MauD shares
sequence similarity, including a CPxC motif, with a
number of thiol:disulfide interchange proteins. In MauD
mutants, the small subunit apparently does not form
properly and is rapidly degraded [Protein fate, Protein
folding and stabilization, Energy metabolism, Amino
acids and amines].
Length = 189
Score = 27.9 bits (62), Expect = 4.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 89 CQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLL 125
C + II+ + R E T VV + DG H L
Sbjct: 86 CPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFL 122
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 434
Score = 27.6 bits (62), Expect = 7.3
Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 30/78 (38%)
Query: 134 FVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVY--------------SD 179
FV CP GF K+ I P VV G D+ ++
Sbjct: 342 FVDWCPTGF----------------KVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAE 385
Query: 180 VWASMGQKEEAAYRKQAF 197
W+ + K + Y K+AF
Sbjct: 386 AWSRLDHKFDLMYSKRAF 403
>gnl|CDD|225280 COG2423, COG2423, Predicted ornithine cyclodeaminase, mu-crystallin
homolog [Amino acid transport and metabolism].
Length = 330
Score = 27.7 bits (62), Expect = 7.5
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 142 FEPDKETVEK----ARKAGISKIEITNDPKEVVQGADVV 176
+ D E E RK G + + +E V+GAD+V
Sbjct: 161 YSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIV 199
>gnl|CDD|226496 COG4008, COG4008, Predicted metal-binding transcription factor
[Transcription].
Length = 153
Score = 26.8 bits (59), Expect = 9.1
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 6/35 (17%)
Query: 143 EPDKETVEKARKAGISK------IEITNDPKEVVQ 171
EP E VE A ++ +E D + ++
Sbjct: 112 EPPVEEVEVLADAFVTPEEAREALEEAGDLRTAMK 146
>gnl|CDD|188064 TIGR00559, pdxJ, pyridoxine 5'-phosphate synthase. PdxJ is
required in the biosynthesis of pyridoxine (vitamin B6),
a precursor to the enzyme cofactor pyridoxal phosphate.
ECOCYC describes the predicted reaction equation as
1-amino-propan-2-one-3-phosphate +
deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The
product of that reaction is oxidized by PdxH to
pyridoxal 5'-phosphate [Biosynthesis of cofactors,
prosthetic groups, and carriers, Pyridoxine].
Length = 236
Score = 27.1 bits (60), Expect = 9.4
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 11/59 (18%)
Query: 143 EPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAA-YRKQAFQGF 200
+ DK+ ++ A + G IEI Y++ Q EE A K +
Sbjct: 131 DADKDQIKAAAEVGADFIEIHTGC----------YANAKNDAEQAEELARIAKASTFAA 179
>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like,
2-hydroxycarboxylate dehydrogenase family. Members of
this family include ubiquitous enzymes like L-lactate
dehydrogenases (LDH), L-2-hydroxyisocaproate
dehydrogenases, and some malate dehydrogenases (MDH).
LDH catalyzes the last step of glycolysis in which
pyruvate is converted to L-lactate. MDH is one of the
key enzymes in the citric acid cycle, facilitating both
the conversion of malate to oxaloacetate and
replenishing levels of oxalacetate by reductive
carboxylation of pyruvate. The LDH/MDH-like proteins are
part of the NAD(P)-binding Rossmann fold superfamily,
which includes a wide variety of protein families
including the NAD(P)-binding domains of alcohol
dehydrogenases, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenases, aminoacid
dehydrogenases, repressor rex, and NAD-binding potassium
channel domains, among others.
Length = 263
Score = 26.9 bits (60), Expect = 9.7
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 159 KIEITNDPKEVVQGADVVYSDVWASMGQKE 188
K+ IT+DP E + ADVV + A +G+K
Sbjct: 57 KVSITDDPYEAFKDADVVI--ITAGVGRKP 84
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.414
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,514,046
Number of extensions: 1289690
Number of successful extensions: 1412
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1338
Number of HSP's successfully gapped: 54
Length of query: 261
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 166
Effective length of database: 6,723,972
Effective search space: 1116179352
Effective search space used: 1116179352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.2 bits)