RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 024871
(261 letters)
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A
{Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB:
1a1s_A
Length = 315
Score = 459 bits (1183), Expect = e-165
Identities = 137/263 (52%), Positives = 189/263 (71%), Gaps = 3/263 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++MIF KPS RTRVSFE + LGGHA+YL D+Q+ + E D ARVL RY D IMAR
Sbjct: 49 LAMIFQKPSTRTRVSFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMAR 108
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
V+ H+D+ DLAK+ATVPVINGL+D++HPCQ +AD +TI E G ++G KVVYVGDGNN+
Sbjct: 109 VYDHKDVEDLAKYATVPVINGLSDFSHPCQALADYMTIWEKKGTIKGVKVVYVGDGNNVA 168
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIEITNDPKEVVQGADVVY 177
HS ++ + + V A P+G+EPD++ ++ A + E+ +DP + V+ ADV+Y
Sbjct: 169 HSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIY 228
Query: 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPY 237
+DVWASMGQ+ EA R++ F+ FQV++ L+K A P FMHCLPA RG EVT+ VI++P
Sbjct: 229 TDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDDVIDSPN 288
Query: 238 SIVFPQAENRMHAQNAIMLHALG 260
S+V+ QAENR+HAQ A++ +G
Sbjct: 289 SVVWDQAENRLHAQKAVLALVMG 311
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics,
niaid, national institute of allergy AN infectious
diseases; 2.10A {Burkholderia thailandensis}
Length = 309
Score = 456 bits (1175), Expect = e-164
Identities = 116/260 (44%), Positives = 161/260 (61%), Gaps = 3/260 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++MIF K S RTR+SFE G LGGHA+++ D Q+G+ E D+A+V+ R DIIM R
Sbjct: 48 LAMIFEKSSTRTRLSFEAGIFQLGGHAVFMSTRDTQLGRGEPVEDSAQVISRMVDIIMIR 107
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
F I A+ + VPVINGLT+ HPCQ++AD T EH G + G V +VGD NN++
Sbjct: 108 TFEQDIIQRFAENSRVPVINGLTNEYHPCQVLADIFTYYEHRGPIRGKTVAWVGDANNML 167
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180
++W+ A ++ F + P G+ D + V+ ++ +DP E +GAD+V +DV
Sbjct: 168 YTWIQAARILDFKLQLSTPPGYALDAKLVDAESAP---FYQVFDDPNEACKGADLVTTDV 224
Query: 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240
W SMG + E RK+AF + VDE +M A A FMHCLPA RG EVT GVI+ P S+V
Sbjct: 225 WTSMGFEAENEARKRAFADWCVDEEMMSHANSDALFMHCLPAHRGEEVTAGVIDGPQSVV 284
Query: 241 FPQAENRMHAQNAIMLHALG 260
+ +AENR+H Q A+M L
Sbjct: 285 WDEAENRLHVQKALMEFLLL 304
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A
{Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A
1fvo_A 1c9y_A* 1fb5_A
Length = 321
Score = 455 bits (1172), Expect = e-163
Identities = 118/263 (44%), Positives = 162/263 (61%), Gaps = 4/263 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+ MIF K S RTR+S ETGF+LLGGH +L DI +G E D ARVL D ++AR
Sbjct: 49 LGMIFEKRSTRTRLSTETGFALLGGHPCFLTTQDIHLGVNESLTDTARVLSSMADAVLAR 108
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
V+ D+ LAK A++P+INGL+D HP QI+AD LT+ EH L+G + ++GDGNNI+
Sbjct: 109 VYKQSDLDTLAKEASIPIINGLSDLYHPIQILADYLTLQEHYSSLKGLTLSWIGDGNNIL 168
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIEITNDPKEVVQGADVVY 177
HS ++ A+ H A PKG+EPD + A + +K+ +TNDP E G +V+
Sbjct: 169 HSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLI 228
Query: 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPY 237
+D W SMG++EE R QAFQG+QV K+A F+HCLP + EV + V +P
Sbjct: 229 TDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLPR-KPEEVDDEVFYSPR 287
Query: 238 SIVFPQAENRMHAQNAIMLHALG 260
S+VFP+AENR A+M+ L
Sbjct: 288 SLVFPEAENRKWTIMAVMVSLLT 310
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center
for structural genomics of infec diseases, csgid,
rossman fold; 2.70A {Campylobacter jejuni subsp}
Length = 307
Score = 454 bits (1171), Expect = e-163
Identities = 97/264 (36%), Positives = 154/264 (58%), Gaps = 4/264 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++MIF K S RTR++FE + LGG A++L +D+Q+ + E +D ARV+ D +M R
Sbjct: 39 LAMIFEKNSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMR 98
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEG-TKVVYVGDGNNI 119
V H+ +L+ A+++ PVIN L++ HP Q++ D TI E G KV ++GD NN+
Sbjct: 99 VNKHETLLEFARYSKAPVINALSELYHPTQVLGDLFTIKEWNKMQNGIAKVAFIGDSNNM 158
Query: 120 VHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIEITNDPKEVVQGADVV 176
+SWL+ A+++ F A PK ++ E E A K + +KI + D E ++ DVV
Sbjct: 159 CNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVV 218
Query: 177 YSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAP 236
+D W SMG++ E + + F+GF +DE M +A A +HCLPA RG EV+E + E
Sbjct: 219 ITDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEKH 278
Query: 237 YSIVFPQAENRMHAQNAIMLHALG 260
++F +A NR++ A++
Sbjct: 279 ADVIFEEARNRLYVVKALLCFLDN 302
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics,
NYSGXRC, target 9454P, operon, amino-acid biosynthesis,
ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Length = 323
Score = 454 bits (1171), Expect = e-163
Identities = 115/263 (43%), Positives = 165/263 (62%), Gaps = 3/263 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+ ++F K S RTRVSF LGG I L P + Q+G+ E RD ARVL RY D + R
Sbjct: 51 LGLVFLKASTRTRVSFTVAMYQLGGQVIDLSPSNTQVGRGEPVRDTARVLGRYVDGLAIR 110
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
F ++ + A +A +PVIN LTD+ HPCQ++AD LTI E+ GRL G K+ YVGDGNN+
Sbjct: 111 TFAQTELEEYAHYAGIPVINALTDHEHPCQVVADLLTIRENFGRLAGLKLAYVGDGNNVA 170
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIEITNDPKEVVQGADVVY 177
HS LL + + A P+GF PD +A + ++++I DP E +GA ++Y
Sbjct: 171 HSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILY 230
Query: 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPY 237
+DVW SMGQ+ E +R Q F+ +Q++ L+ A +A +HCLPA RG E+T+ V+E P
Sbjct: 231 TDVWTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDEVMEGPR 290
Query: 238 SIVFPQAENRMHAQNAIMLHALG 260
S ++ +AENR+HAQ A++ +G
Sbjct: 291 SRIWDEAENRLHAQKAVLAALMG 313
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
3.25A {Bacillus anthracis}
Length = 340
Score = 453 bits (1168), Expect = e-162
Identities = 121/263 (46%), Positives = 169/263 (64%), Gaps = 4/263 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+ +IF K S RTRVSFE G LGGH ++L ++QMG+ E D A+VL Y D IM R
Sbjct: 73 LGLIFDKHSTRTRVSFEAGMVQLGGHGMFLNGKEMQMGRGETVSDTAKVLSHYIDGIMIR 132
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
F H D+ +LAK +++PVINGLTD +HPCQ +AD +TI E +G K+ YVGDGNN+
Sbjct: 133 TFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEETNTFKGIKLAYVGDGNNVC 192
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIEITNDPKEVVQGADVVY 177
HS LL ++ + H A P G+ P++E V+KA ++IEI ++P+ V AD +Y
Sbjct: 193 HSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIY 252
Query: 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPY 237
+DVW SMGQ+ E + FQ +Q+++ L+K A +F+HCLPA R EVT +I+ P
Sbjct: 253 TDVWMSMGQEGEEE-KYTLFQPYQINKELVKHAKQTYHFLHCLPAHREEEVTGEIIDGPQ 311
Query: 238 SIVFPQAENRMHAQNAIMLHALG 260
SIVF QA NR+HAQ A+++
Sbjct: 312 SIVFEQAGNRLHAQKALLVSLFK 334
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil
structural genomics, NPPSFA; 2.00A {Thermus
thermophilus}
Length = 301
Score = 450 bits (1159), Expect = e-162
Identities = 117/259 (45%), Positives = 161/259 (62%), Gaps = 6/259 (2%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++++F KPS+RTR + E LGGHA+YL + +G+RE RD A+ L R+ + I AR
Sbjct: 48 LALLFEKPSLRTRTTLEVAMVHLGGHAVYLDQKQVGIGEREPVRDVAKNLERFVEGIAAR 107
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
VF H+ + LA+ A VPV+N L+D HP Q +AD LT+ E G L G +V +VGDGNN++
Sbjct: 108 VFRHETVEALARHAKVPVVNALSDRAHPLQALADLLTLKEVFGGLAGLEVAWVGDGNNVL 167
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180
+S L +A + A PKG+EPD +++A T+DPKE GA +Y+DV
Sbjct: 168 NSLLEVAPLAGLKVRVATPKGYEPDPGLLKRAN------AFFTHDPKEAALGAHALYTDV 221
Query: 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240
W SMGQ+ E R + FQGFQV+ L+KL P+ F+HCLPA G E TE + P S V
Sbjct: 222 WTSMGQEAEREKRLRDFQGFQVNGELLKLLRPEGVFLHCLPAHYGEETTEEAVHGPRSRV 281
Query: 241 FPQAENRMHAQNAIMLHAL 259
F QAENR+H A++L L
Sbjct: 282 FDQAENRLHTAKAVLLTLL 300
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography,
ornithine carbamyoltransferase, carbamoyl phosphate, L-
norvaline; 2.20A {Mycobacterium tuberculosis} PDB:
2p2g_A
Length = 307
Score = 448 bits (1154), Expect = e-161
Identities = 112/264 (42%), Positives = 157/264 (59%), Gaps = 4/264 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+++IF K S RTR SFE G + LGGHA+ + Q+G+ E +D A+VL RY D I+ R
Sbjct: 42 VAVIFDKNSTRTRFSFELGIAQLGGHAVVVDSGSTQLGRDETLQDTAKVLSRYVDAIVWR 101
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG-NNI 119
FG + + +A ATVPVIN L+D HPCQ++AD TI E G L G ++ Y GDG NN+
Sbjct: 102 TFGQERLDAMASVATVPVINALSDEFHPCQVLADLQTIAERKGALRGLRLSYFGDGANNM 161
Query: 120 VHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIEITNDPKEVVQGADVV 176
HS LL H A P+GF PD A + + + +T D GADV+
Sbjct: 162 AHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVL 221
Query: 177 YSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAP 236
+D W SMGQ+ + R + F+ FQ++ L+ LA A +HCLPA RG E+T+ V++ P
Sbjct: 222 VTDTWTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCLPAHRGDEITDAVMDGP 281
Query: 237 YSIVFPQAENRMHAQNAIMLHALG 260
S V+ +AENR+HAQ A+++ L
Sbjct: 282 ASAVWDEAENRLHAQKALLVWLLE 305
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.80A {Coccidioides immitis}
Length = 353
Score = 441 bits (1136), Expect = e-157
Identities = 106/280 (37%), Positives = 150/280 (53%), Gaps = 21/280 (7%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++M+F+K S RTRVS E +GGH ++LG DDIQ+G E D + V+ I+AR
Sbjct: 69 VAMMFSKRSTRTRVSTEGAVVKMGGHPMFLGKDDIQLGVNESLYDTSVVISSMVSCIVAR 128
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGR-------------LEG 107
V H DI +LAK ++VPVIN L D HP Q +AD LTI E LEG
Sbjct: 129 VGPHSDIANLAKHSSVPVINALCDTFHPLQAIADFLTIHESFASQSATHGTHPSSLGLEG 188
Query: 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI-----SKIEI 162
K+ +VGD NN++ + A+ + + A P+G+E VE +KA +
Sbjct: 189 LKIAWVGDANNVLFDLAIAATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQ 248
Query: 163 TNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKL--AGPKAYFMHCL 220
T P+ V+ ADV+ +D W SMGQ+ E R +AF+ F+V L K A FMHCL
Sbjct: 249 TTVPEVAVKDADVIVTDTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHCL 308
Query: 221 PAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
P EV++ V + S+VFP+AENR+ A + + +
Sbjct: 309 PRHPE-EVSDEVFYSERSLVFPEAENRLWAAISALEAFVV 347
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO,
delta-N-(phosphonoacetyl)-L- ornithine, agmatine
deiminase route, agmatine catabolism; HET: PAO PGE;
1.59A {Enterococcus faecalis}
Length = 339
Score = 435 bits (1121), Expect = e-155
Identities = 112/266 (42%), Positives = 157/266 (59%), Gaps = 9/266 (3%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
MIF + S RTRVSFET LGGH YL P IQ+G E D +RVL R DI+MARV
Sbjct: 68 MIFQQSSTRTRVSFETAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVE 127
Query: 63 GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHV---GRLEGTKVVYVGDGNNI 119
H I+DLA AT+PVING++DYNHP Q + D T++EH+ +LE KVV+VGD +
Sbjct: 128 RHHSIVDLANCATIPVINGMSDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDATQV 187
Query: 120 VHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR---KAGISKIEITNDPKEVVQGADVV 176
S L+ + + +FV P+GF+ ++E K + +T D V+GAD +
Sbjct: 188 CFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVT-DDASSVEGADFL 246
Query: 177 YSDVWASMGQKE-EAAYRKQAF-QGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIE 234
Y+DVW + + E R + F +QV++ +M AG FMHCLPA RG EVT+ VI+
Sbjct: 247 YTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDEVID 306
Query: 235 APYSIVFPQAENRMHAQNAIMLHALG 260
SI F +AENR+ + ++++ +
Sbjct: 307 GKNSICFDEAENRLTSIRGLLVYLMN 332
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase
route; HET: PAO; 2.00A {Enterococcus faecalis} PDB:
4a8h_A* 3txx_A
Length = 355
Score = 436 bits (1123), Expect = e-155
Identities = 112/266 (42%), Positives = 157/266 (59%), Gaps = 9/266 (3%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
MIF + S RTRVSFET LGGH YL P IQ+G E D +RVL R DI+MARV
Sbjct: 46 MIFQQSSTRTRVSFETAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVE 105
Query: 63 GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHV---GRLEGTKVVYVGDGNNI 119
H I+DLA AT+PVING++DYNHP Q + D T++EH+ +LE KVV+VGD +
Sbjct: 106 RHHSIVDLANCATIPVINGMSDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDATQV 165
Query: 120 VHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR---KAGISKIEITNDPKEVVQGADVV 176
S L+ + + +FV P+GF+ ++E K + +T D V+GAD +
Sbjct: 166 CFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVT-DDASSVEGADFL 224
Query: 177 YSDVWASMGQKE-EAAYRKQAF-QGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIE 234
Y+DVW + + E R + F +QV++ +M AG FMHCLPA RG EVT+ VI+
Sbjct: 225 YTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDEVID 284
Query: 235 APYSIVFPQAENRMHAQNAIMLHALG 260
SI F +AENR+ + ++++ +
Sbjct: 285 GKNSICFDEAENRLTSIRGLLVYLMN 310
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural
genomics, protein structure initiative, PSI, joint
center for structu genomics; 2.25A {Thermotoga maritima}
SCOP: c.78.1.1 c.78.1.1
Length = 325
Score = 432 bits (1114), Expect = e-155
Identities = 111/262 (42%), Positives = 165/262 (62%), Gaps = 5/262 (1%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
MIF K S RTR++FET F+ GGH I+L P+DI +G +E D ARVL R D IM R +
Sbjct: 63 MIFEKRSTRTRLAFETAFAEEGGHPIFLSPNDIHLGAKESLEDTARVLGRMVDAIMFRGY 122
Query: 63 GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG-NNIVH 121
+ + LA+++ VPV NGLTD HP Q +AD +TI E+ GRL+G KVV++GD NN+
Sbjct: 123 KQETVEKLAEYSGVPVYNGLTDEFHPTQALADLMTIEENFGRLKGVKVVFMGDTRNNVAT 182
Query: 122 SWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIEITNDPKEVVQGADVVYS 178
S ++ + + +FV P+ +P + ++ ++ + T++ +E + GADVVY+
Sbjct: 183 SLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYT 242
Query: 179 DVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAG-PKAYFMHCLPAERGVEVTEGVIEAPY 237
DVWASMG++++ R + +QV+E +M++ G + FMHCLPA +G EVT VIE
Sbjct: 243 DVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYEVIEGKQ 302
Query: 238 SIVFPQAENRMHAQNAIMLHAL 259
S V+ +AENR H A+M+ L
Sbjct: 303 SRVWDEAENRKHTIKAVMIATL 324
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase,
arginine degradation pathway, giardia lamblia, drug
target; 2.00A {Giardia intestinalis}
Length = 328
Score = 423 bits (1089), Expect = e-151
Identities = 97/275 (35%), Positives = 147/275 (53%), Gaps = 17/275 (6%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYL-GPDDIQMGKREETRDAARVLCRYNDIIMARV 61
FAKPS+RTRVS ET + LGGHAIY + +G +E +D A V R DI AR+
Sbjct: 49 AFFAKPSLRTRVSLETAMTRLGGHAIYYELGANSNVGGKETVQDTAEVFSRMVDICTARL 108
Query: 62 FGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHV-------GRLEGTKVVYVG 114
+ + ++A+ A+VP IN L D+ HP Q++ D +TI E +G K Y G
Sbjct: 109 ATKEMMREMAQHASVPCINALDDFGHPLQMVCDFMTIKEKFTAAGEFSNGFKGIKFAYCG 168
Query: 115 DG-NNIVHSWLLMASVIPFHFVCACP--KGFEPDKETVEKARKAGI-----SKIEITNDP 166
D NN+ + + +++ CP K F+P KE +++ + I+I +D
Sbjct: 169 DSMNNVTYDLMRGCALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDC 228
Query: 167 KEVVQGADVVYSDVWASMGQKEE-AAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERG 225
K+ +G DVVY+D W S +E R + FQVD+ +M + ++ FM+CLPA RG
Sbjct: 229 KKGCEGVDVVYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCLPATRG 288
Query: 226 VEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
E T VI+ P S+ + +A NR+H+ A++ L
Sbjct: 289 EEQTASVIDGPKSVCYDEAGNRLHSAMAVLDFFLH 323
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal
binding-site, hexamer, cytoplasm, arginine metabolism;
2.10A {Lactobacillus hilgardii}
Length = 359
Score = 411 bits (1058), Expect = e-146
Identities = 107/282 (37%), Positives = 155/282 (54%), Gaps = 25/282 (8%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
++F K S RTR +F T LG H YLG +DIQ+GK+E T D A+VL D I R F
Sbjct: 72 LLFEKSSTRTRSAFTTASIDLGAHPEYLGQNDIQLGKKESTSDTAKVLGSMFDGIEFRGF 131
Query: 63 GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG-NNIVH 121
D LA+ + VPV NGLTD HP Q++AD +T+ E+ G+L+G + ++GDG NN+ +
Sbjct: 132 KQSDAEILARDSGVPVWNGLTDEWHPTQMLADFMTVKENFGKLQGLTLTFMGDGRNNVAN 191
Query: 122 SWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIEITNDPKEVVQGADVVYS 178
S L+ +++ + PK P +ET A+ +K+ IT+D E ++G++VVY+
Sbjct: 192 SLLVTGAILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYT 251
Query: 179 DVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAG---PKAYFMHCLPAERG---------- 225
DVW SMG+ R + +QV+ MK G + FMHCLPA
Sbjct: 252 DVWVSMGE-SNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCLPAFHNTDTQYGKEIK 310
Query: 226 -------VEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
+EVT+ V + Y+ F +AENRMH+ A+M LG
Sbjct: 311 EKYGITEMEVTDEVFTSKYARQFEEAENRMHSIKAMMAATLG 352
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine
transcarbamoylase, hydrolase; 2.50A {Mycoplasma
penetrans} PDB: 4anf_A
Length = 365
Score = 407 bits (1048), Expect = e-144
Identities = 103/289 (35%), Positives = 147/289 (50%), Gaps = 31/289 (10%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
++F K S RTR +FE S LG Y+GP MGK+E D A+VL R+ D I R F
Sbjct: 76 ILFQKDSTRTRCAFEVAASDLGAGVTYIGPSGSNMGKKESIEDTAKVLGRFYDGIEFRGF 135
Query: 63 GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGD-GNNIVH 121
D+ L K++ VPV NGLTD HP QI+AD +T+ E G L+ K+V++GD NN+
Sbjct: 136 AQSDVDALVKYSGVPVWNGLTDDEHPTQIIADFMTMKEKFGNLKNKKIVFIGDYKNNVGV 195
Query: 122 SWLLMASVIPFHFVCACPKGFEP--DKETVEKARKAGI---SKIEITNDPKEVVQGADVV 176
S ++ A+ H V P ++ DK + K + + + D Q ADV+
Sbjct: 196 STMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKILAAQDADVI 255
Query: 177 YSDVWASMGQKEEA-AYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERG---------- 225
Y+DVW S+G+ E R + FQVD ++K A F+HCLPA
Sbjct: 256 YTDVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCLPAFHDDHTSFSKEVA 315
Query: 226 --------------VEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
+EVT+ V ++ ++ F QAENRMH+ AI+L +G
Sbjct: 316 TTLGAKYPIVAKGEMEVTDEVFQSLHNKAFDQAENRMHSIKAIILSTIG 364
>3upd_A Otcase, ornithine carbamoyltransferase; structural genomics, center
for structural genomics of infec diseases, csgid; 2.91A
{Vibrio vulnificus}
Length = 358
Score = 407 bits (1047), Expect = e-144
Identities = 112/283 (39%), Positives = 152/283 (53%), Gaps = 25/283 (8%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
+IF K S RTR +FE G Y+GP Q+G +E +D ARVL R D I R F
Sbjct: 75 LIFEKASTRTRCAFEVAAFDQGAQVTYIGPSGSQIGDKESMKDTARVLGRMYDGIQYRGF 134
Query: 63 GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEH--VGRLEGTKVVYVGDG-NNI 119
G + +L FA VPV NGLTD HP QI+AD LT++EH L + Y+GD NN+
Sbjct: 135 GQAIVEELGAFAGVPVWNGLTDEFHPTQILADFLTMLEHSQGKALADIQFAYLGDARNNV 194
Query: 120 VHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIEITNDPKEVVQGADVV 176
+S ++ A+ + P+ + PD+E V + KI +T + E VQG D +
Sbjct: 195 GNSLMVGAAKMGMDIRLVGPQAYWPDEELVAACQAIAKQTGGKITLTENVAEGVQGCDFL 254
Query: 177 YSDVWASMGQKEEA-AYRKQAFQGFQVDEFLMKLAG-PKAYFMHCLPA------------ 222
Y+DVW SMG+ EA R + +QV+ ++K G P FMHCLPA
Sbjct: 255 YTDVWVSMGESPEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHCLPAFHNDETTIGKQV 314
Query: 223 -----ERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
+G+EVTE V E+ +SIVF +AENRMH A+M+ LG
Sbjct: 315 ADKFGMKGLEVTEEVFESEHSIVFDEAENRMHTIKAVMVATLG 357
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A
{Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB:
1ort_A
Length = 335
Score = 402 bits (1036), Expect = e-142
Identities = 117/284 (41%), Positives = 157/284 (55%), Gaps = 26/284 (9%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
+IF K S RTR +FE G + Y+ P+ Q+G +E +D ARVL R D I R F
Sbjct: 50 LIFEKTSTRTRCAFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGF 109
Query: 63 GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGR-LEGTKVVYVGDG-NNIV 120
+ + +LAKFA VPV NGLTD HP Q++AD LT+ EH + L Y+GD NN+
Sbjct: 110 KQEIVEELAKFAGVPVFNGLTDEYHPTQMLADVLTMREHSDKPLHDISYAYLGDARNNMG 169
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIEITNDPKEVVQGADVVY 177
+S LL+ + + A PK P E V + +K +K+ +T DPKE V+G D V+
Sbjct: 170 NSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVH 229
Query: 178 SDVWASMGQKEEA-AYRKQAFQGFQVDEFLMKLAG-PKAYFMHCLPAER----------- 224
+DVW SMG+ EA R + +QV+ +MK G P+A FMHCLPA
Sbjct: 230 TDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPAFHNSETKVGKQIA 289
Query: 225 --------GVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
G+EVTE V E+PY+I F QAENRMH AI++ L
Sbjct: 290 EQYPNLANGIEVTEDVFESPYNIAFEQAENRMHTIKAILVSTLA 333
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex,
transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP:
c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Length = 333
Score = 396 bits (1019), Expect = e-140
Identities = 109/284 (38%), Positives = 151/284 (53%), Gaps = 26/284 (9%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
+IF K S RTR SFE G YLGP Q+G +E +D ARVL R D I R +
Sbjct: 49 LIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGY 108
Query: 63 GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVG--RLEGTKVVYVGDG-NNI 119
G + + LA++A+VPV NGLT+ HP Q++AD LT+ EH+ +VY GD NN+
Sbjct: 109 GQEIVETLAEYASVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNM 168
Query: 120 VHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIEITNDPKEVVQGADVV 176
+S L A++ P+ P+ V + R I +T D + V+GAD +
Sbjct: 169 GNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFI 228
Query: 177 YSDVWASMGQKEEA-AYRKQAFQGFQVDEFLMKLAG-PKAYFMHCLPA------------ 222
Y+DVW SMG+ +E A R + +QV+ +M+L G P+ F+HCLPA
Sbjct: 229 YTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKM 288
Query: 223 ------ERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
G+EVT+ V E+ SIVF QAENRMH A+M+ L
Sbjct: 289 AEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLS 332
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET:
AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A
1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A*
3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A*
3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Length = 359
Score = 386 bits (994), Expect = e-136
Identities = 96/297 (32%), Positives = 138/297 (46%), Gaps = 39/297 (13%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPD------------DIQMGKREETRDAAR 48
++++F PSMRTR SFE G LGGHA+ L P + E + AR
Sbjct: 61 IALVFFNPSMRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFNLGTVMDGDTEEHIAEVAR 120
Query: 49 VLCRYNDIIMARVFG----------HQDILDLAKFATVPVINGLTDYNHPCQIMADALTI 98
VL RY D+I R F Q + AK++ VPVIN + HPCQ +A AL +
Sbjct: 121 VLGRYVDLIGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVIN-METITHPCQELAHALAL 179
Query: 99 IEHVGR--LEGTKVVYVGDG------NNIVHSWLLMASVIPFHFVCACPK-GFEPDKETV 149
EH G L G K V + +S L +A+ + CP + D+ +
Sbjct: 180 QEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPTPDYILDERYM 239
Query: 150 EKARKAGI---SKIEITNDPKEVVQGADVVYSDVWASM---GQKEEAAYRKQAFQGFQVD 203
+ A + +++++D GADVVY+ W ++ G E + +Q F VD
Sbjct: 240 DWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVD 299
Query: 204 EFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
E M L F HCLP R V+ T+ V+++P I +AENR+H Q AIM +G
Sbjct: 300 ERKMALT-NNGVFSHCLPLRRNVKATDAVMDSPNCIAIDEAENRLHVQKAIMAALVG 355
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase;
2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1
PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Length = 324
Score = 383 bits (986), Expect = e-135
Identities = 75/287 (26%), Positives = 116/287 (40%), Gaps = 37/287 (12%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDD------------IQMGKREETRDAAR 48
+ MIF S+RTR+S + LG + I L + + K E +A
Sbjct: 39 LLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIP 98
Query: 49 VLCRYNDIIMARVF----------GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTI 98
V+ Y DII R F I + + PV + HP Q AD +TI
Sbjct: 99 VMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITI 158
Query: 99 IEHVGRLEG-TKVVYVGDG----NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR 153
E+ + + + +S+ + + FV P+G+E D + V AR
Sbjct: 159 EEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNAR 218
Query: 154 KAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPK 213
+ D + +GAD +Y+ WA+ + + V + M +
Sbjct: 219 --------VEYDQMKAFEGADFIYAKNWAAYTGDNYGQ-ILSTDRNWTVGDRQMAVT-NN 268
Query: 214 AYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
AYFMHCLP R + VT+ VIE+P SIV P+A NR + ++ L
Sbjct: 269 AYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLE 315
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A
{Enterococcus faecalis}
Length = 418
Score = 369 bits (950), Expect = e-128
Identities = 75/313 (23%), Positives = 116/313 (37%), Gaps = 55/313 (17%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARV- 61
+F S RTR SF + +LLG L Q+ E R+ A ++ DII R
Sbjct: 65 SLFRDNSTRTRFSFASACNLLGLEVQDLDEGKSQISHGETVRETANMISFMADIIGIRDD 124
Query: 62 --------FGHQDILDLAKF-------ATVPVINGLTDYNHPCQIMADALTIIEHVG--- 103
+ H+ + + ++N D +HP Q MADAL +I G
Sbjct: 125 MYIGKGNAYMHEVSESVQEGYKDGVLEQRPTLVNLQCDIDHPTQAMADALHLIHEFGGIE 184
Query: 104 RLEGTKVVYV-------GDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156
L+G KV G ++ + + + + V A P+G+E E E A+K
Sbjct: 185 NLKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIMPEVEEVAKKNA 244
Query: 157 I---SKIEITNDPKEVVQGADVVYSDVWASMGQKE-------------------EAAYRK 194
TN E + ADVVY WA E E +
Sbjct: 245 AEFGGNFTKTNSMAEAFKDADVVYPKSWAPFAAMEKRTELYGNGDQAGIDQLEQELLSQN 304
Query: 195 QAFQGFQVDEFLMKLAG-PKAYFMHCLPA------ERGVEVTEGVIEAPYSIVFPQAENR 247
+ + ++ E LMK KA +MHCLPA EV V + ++ +A +
Sbjct: 305 KKHKDWECTEELMKTTKDGKALYMHCLPADITGVSCEEGEVEASVFDRYRVELYKEASYK 364
Query: 248 MHAQNAIMLHALG 260
+ A++ +
Sbjct: 365 PYVIAAMIFLSKV 377
>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia
coli}
Length = 399
Score = 364 bits (937), Expect = e-127
Identities = 70/313 (22%), Positives = 112/313 (35%), Gaps = 55/313 (17%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
+F S RTR S+ + +LLG L Q+ E R+ A ++ D I R
Sbjct: 68 SVFRDNSTRTRFSYASALNLLGLAQQDLDEGKSQIAHGETVRETANMISFCADAIGIRDD 127
Query: 63 GH------------QDILDLAKFATVP----VINGLTDYNHPCQIMADALTIIEHVGRLE 106
+ + D K +P ++N D +HP Q MAD + EH G LE
Sbjct: 128 MYLGAGNAYMREVGAALDDGYKQGVLPQRPALVNLQCDIDHPTQSMADLAWLREHFGSLE 187
Query: 107 GTKVVYV----------GDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156
K + G ++ + + + A P+G++ + VE A+
Sbjct: 188 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLIPDVVEVAKNNA 247
Query: 157 I---SKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYR-------------------K 194
+E + AD+VY WA EE
Sbjct: 248 KASGGSFRQVTSMEEAFKDADIVYPKSWAPYKVMEERTELLRANDHEGLKALEKQCLAQN 307
Query: 195 QAFQGFQVDEFLMKLAG-PKAYFMHCLPA------ERGVEVTEGVIEAPYSIVFPQAENR 247
+ + E +M+L +A +MHCLPA + EVTEGV E + +A +
Sbjct: 308 AQHKDWHCTEEMMELTRDGEALYMHCLPADISGVSCKEGEVTEGVFEKYRIATYKEASWK 367
Query: 248 MHAQNAIMLHALG 260
+ A++L
Sbjct: 368 PYIIAAMILSRKY 380
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor
complex, transferase; HET: PAL; 1.80A {Pyrococcus
abyssi} SCOP: c.78.1.1 c.78.1.1
Length = 308
Score = 141 bits (357), Expect = 1e-40
Identities = 82/281 (29%), Positives = 127/281 (45%), Gaps = 40/281 (14%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYL-GPDDIQMGKREETRDAARVLCRYNDIIMA 59
++ +F +PS RTR+SFE+ LGG I + K E RD + + +Y D+I+
Sbjct: 47 LATLFFEPSTRTRLSFESAMHRLGGAVIGFAEASTSSVKKGESLRDTIKTVEQYCDVIVI 106
Query: 60 RVFGHQD---ILDLAKFATVPVINGLTD--YNHPCQIMADALTIIEHVGRLEGTKVVYVG 114
R H A+ A VPVIN D HP Q + D TI + GR++G K+ +G
Sbjct: 107 R---HPKEGAARLAAEVAEVPVINA-GDGSNQHPTQTLLDLYTIKKEFGRIDGLKIGLLG 162
Query: 115 DGNN--IVHS--WLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVV 170
D VHS L + + + P+ + VE+ R+ G+ K+ T ++V+
Sbjct: 163 DLKYGRTVHSLAEALTFYDVELYLI--SPELLRMPRHIVEELREKGM-KVVETTTLEDVI 219
Query: 171 QGADVVYSDVWASMG--QKE----EAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAER 224
DV+Y + QKE E Y K +QV+ +++ A + MH LP R
Sbjct: 220 GKLDVLY------VTRIQKERFPDEQEYLK-VKGSYQVNLKVLEKAKDELRIMHPLP--R 270
Query: 225 GVEVTEGVIEAPYSIVFPQAEN----RMHAQNAIMLHALGL 261
E+ V ++I F Q N RM A++ LG+
Sbjct: 271 VDEIHPEVDNTKHAIYFRQVFNGVPVRM----ALLALVLGV 307
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius}
SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Length = 299
Score = 136 bits (345), Expect = 7e-39
Identities = 71/281 (25%), Positives = 114/281 (40%), Gaps = 44/281 (15%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYL-GPDDIQMGKREETRDAARVLCRYNDIIMA 59
+S+ F +PS RT +SF+ LGG I G + + K E D R+L Y+D I+
Sbjct: 41 ISIAFFEPSTRTYLSFQKAIINLGGDVIGFSGEESTSVAKGENLADTIRMLNNYSDGIVM 100
Query: 60 RVFGHQD---ILDLAKFATVPVINGLTD--YNHPCQIMADALTIIEHVGRLEGTKVVYVG 114
R H+ ++ + +PVIN D + HP Q + D TI +H ++G +G
Sbjct: 101 R---HKYDGASRFASEISDIPVINA-GDGKHEHPTQAVIDIYTINKHFNTIDGLVFALLG 156
Query: 115 DGNN--IVHS--WLLMA-SVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEV 169
D V+S +L + + P+ KE +++ ++ +P EV
Sbjct: 157 DLKYARTVNSLLRILTRFRPKLVYLI--SPQLLRARKEILDELN----YPVKEVENPFEV 210
Query: 170 VQGADVVYSDVWASMG--QKE----EAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAE 223
+ DV+Y + QKE E Y K + V L + +H LP
Sbjct: 211 INEVDVLY------VTRIQKERFVDEMEYEK-IKGSYIVSLDLANKMKKDSIILHPLP-- 261
Query: 224 RGVEVTEGVIEAPYSIVFPQAEN----RMHAQNAIMLHALG 260
R E+ V + + F QA RM +I+ G
Sbjct: 262 RVNEIDRKVDKTTKAKYFEQASYGVPVRM----SILTKIYG 298
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate
transcarbamoylase, pyrimidine biosynthesis
thermostability, substrate channeling; 2.50A
{Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Length = 306
Score = 135 bits (342), Expect = 2e-38
Identities = 77/277 (27%), Positives = 120/277 (43%), Gaps = 35/277 (12%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYL-GPDDIQMGKREETRDAARVLCRYNDIIMA 59
++ +F +PS RTR+SFET LGG I + + K E D RV+ Y DII+
Sbjct: 43 LATVFYEPSTRTRLSFETAMKRLGGEVITMTDLKSSSVAKGESLIDTIRVISGYADIIVL 102
Query: 60 RVFGHQD---ILDLAKFATVPVINGLTD--YNHPCQIMADALTIIEHVGRLEGTKVVYVG 114
R H ++++ VP+IN D HP Q + D TI+ +GR++G K+ +VG
Sbjct: 103 R---HPSEGAARLASEYSQVPIINA-GDGSNQHPTQTLLDLYTIMREIGRIDGIKIAFVG 158
Query: 115 DGNN--IVHS--WLLMA-SVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEV 169
D VHS + L + +FV PK K+ +E + I K ++
Sbjct: 159 DLKYGRTVHSLVYALSLFENVEMYFV--SPKELRLPKDIIEDLKAKNI-KFYEKESLDDL 215
Query: 170 VQGADVVYSDVWASMG--QKE----EAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAE 223
DV+Y + QKE Y K +++ + G K MH LP
Sbjct: 216 DDDIDVLY------VTRIQKERFPDPNEYEK-VKGSYKIK--REYVEGKKFIIMHPLP-- 264
Query: 224 RGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
R E+ V + P + F Q+ + + AI+ +
Sbjct: 265 RVDEIDYDVDDLPQAKYFKQSFYGIPVRMAILKKLIE 301
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P;
1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB:
1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A*
1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A*
2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Length = 310
Score = 129 bits (326), Expect = 5e-36
Identities = 74/282 (26%), Positives = 108/282 (38%), Gaps = 42/282 (14%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQ--MGKREETRDAARVLCRYNDIIM 58
++ F + S RTR+SFET LG + K E D V+ Y D I+
Sbjct: 44 IASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIV 103
Query: 59 ARVFGHQD---ILDLAKFAT-VPVINGLTD--YNHPCQIMADALTIIEHVGRLEGTKVVY 112
R H +F+ VPV+N D HP Q + D TI E GRL+ V
Sbjct: 104 MR---HPQEGAARLATEFSGNVPVLNA-GDGSNQHPTQTLLDLFTIQETQGRLDNLHVAM 159
Query: 113 VGDGNN--IVHS--WLLMA-SVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPK 167
VGD VHS L F+F+ P + ++ + GI + + +
Sbjct: 160 VGDLKYGRTVHSLTQALAKFDGNRFYFI--APDALAMPQYILDMLDEKGI-AWSLHSSIE 216
Query: 168 EVVQGADVVYSDVWASMG--QKE---EAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPA 222
EV+ D++Y M QKE + Y F + + A +H LP
Sbjct: 217 EVMAEVDILY------MTRVQKERLDPSEYAN-VKAQFVLRASDLHNAKANMKVLHPLP- 268
Query: 223 ERGVEVTEGVIEAPYSIVFPQAEN----RMHAQNAIMLHALG 260
R E+ V + P++ F QA N R A++ L
Sbjct: 269 -RVDEIATDVDKTPHAWYFQQAGNGIFARQ----ALLALVLN 305
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase,
carbamoyl phosphate, transferas catalytic cycle; 2.10A
{Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Length = 304
Score = 104 bits (261), Expect = 1e-26
Identities = 70/283 (24%), Positives = 109/283 (38%), Gaps = 60/283 (21%)
Query: 4 IFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYN-DIIMARVF 62
+F +PS RTR SFE LG + + L + K E D R L D+ + R
Sbjct: 42 LFFEPSTRTRFSFEVAEKKLGMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIR-- 99
Query: 63 GHQD---ILDLAKFATVPVINGLTD--YNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN 117
H + +L +P++N D HP Q + D +TI E +G V GD
Sbjct: 100 -HSEDEYYEELVSQVNIPILNA-GDGCGQHPTQSLLDLMTIYEEFNTFKGLTVSIHGD-- 155
Query: 118 NIVHS-------WLLM---ASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPK 167
I HS +L A V+ P ++ ++ T
Sbjct: 156 -IKHSRVARSNAEVLTRLGARVL----FSG-PSEWQDEENTF-----------GTYVSMD 198
Query: 168 EVVQGADVVYSDVWASMG---QKE--EAAYRKQA-FQGFQVDEFLMKLAGPKAYFMHCLP 221
E V+ +DVV M Q E ++A ++ + + + A MH P
Sbjct: 199 EAVESSDVV-------MLLRIQNERHQSAVSQEGYLNKYGLTVERAERMKRHAIIMHPAP 251
Query: 222 AERGVEVTEGVIEAPYSIVFPQAEN----RMHAQNAIMLHALG 260
RGVE+ + ++E+ S +F Q +N RM A++ AL
Sbjct: 252 VNRGVEIDDSLVESEKSRIFKQMKNGVFIRM----AVIQRALQ 290
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal
cavity, hydrolase, metal-B pyrimidine biosynthesis,
hydrolase-transferase; HET: FLC; 2.30A {Aquifex
aeolicus}
Length = 291
Score = 88.3 bits (220), Expect = 7e-21
Identities = 71/284 (25%), Positives = 111/284 (39%), Gaps = 71/284 (25%)
Query: 5 FAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYN-DIIMARVFG 63
F++PS RTR+SFE LG + + K E D + D ++ R
Sbjct: 41 FSEPSTRTRLSFEKAARELGIETYLVSGSESSTVKGESFFDTLKTFEGLGFDYVVFR--- 97
Query: 64 HQD----ILDLAKFATVPVINGLTD--YNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN 117
++ K + ++N D + HP Q + D TI EH G ++ +V+YVGD
Sbjct: 98 VPFVFFPYKEIVKSLNLRLVNA-GDGTHQHPSQGLIDFFTIKEHFGEVKDLRVLYVGD-- 154
Query: 118 NIVHS-------WLLM---ASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPK 167
I HS LL A + VC PK P VE K+++ +D
Sbjct: 155 -IKHSRVFRSGAPLLNMFGAKI----GVCG-PKTLIP--RDVEV------FKVDVFDDVD 200
Query: 168 EVVQGADVVYSDVWASMG---QKE---------EAAYRKQAFQGFQVDEFLMKLAGPKAY 215
+ + ADVV + QKE E++Y KQ F + + +
Sbjct: 201 KGIDWADVV-------IWLRLQKERQKENYIPSESSYFKQ----FGLTKERFEKV---KL 246
Query: 216 FMHCLPAERGVEVTEGVIEAPYSIVFPQAEN----RMHAQNAIM 255
+MH P R V++ ++ S++ Q +N R AI
Sbjct: 247 YMHPGPVNRNVDIDHELVYTEKSLIQEQVKNGIPVRK----AIY 286
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 1e-05
Identities = 58/303 (19%), Positives = 95/303 (31%), Gaps = 106/303 (34%)
Query: 16 FETGFSLLGG---HAI---YLGPDDIQMGKREET-RD--AARVLCRYNDI---------- 56
FE + L G HA+ L +D + K +E ++ AR++ +
Sbjct: 91 FENCY--LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 57 -------IMARVFGHQ----DILD-LAK-FAT-VPVINGLTDYNHPCQIMADALTIIEHV 102
++A +FG Q D + L + T ++ L + A+ L+ E +
Sbjct: 149 VGEGNAQLVA-IFGGQGNTDDYFEELRDLYQTYHVLVGDL------IKFSAETLS--ELI 199
Query: 103 GRLEGTKVVYVGDGNNIVHSWL----------LMASV---IPF-------HFVCACPK-G 141
+ V+ G NI WL + S+ P H+V G
Sbjct: 200 RTTLDAEKVF-TQGLNI-LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257
Query: 142 FEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQ 201
F P + ++ G T + +V + +D W S A F G
Sbjct: 258 FTPGEL---RSYLKGA-----TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG-- 307
Query: 202 VDEFLMKLAGPKAYFMHCLPA---ERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHA 258
+ +AY LP E +E EGV +P ML
Sbjct: 308 -------VRCYEAYPNTSLPPSILEDSLENNEGV-PSP------------------MLSI 341
Query: 259 LGL 261
L
Sbjct: 342 SNL 344
Score = 38.1 bits (88), Expect = 0.003
Identities = 38/201 (18%), Positives = 61/201 (30%), Gaps = 66/201 (32%)
Query: 19 GFSLLG-------GHAIYLGPDDIQMGKR----------EETRDAA----RVLCRYNDII 57
GFS+L I+ G + GKR E D ++ N+
Sbjct: 1658 GFSILDIVINNPVNLTIHFGG---EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHS 1714
Query: 58 MARVFGH-QDILDLAKFATVPVI-------------NGLTDYN-----HP--------CQ 90
+ F + +L +F T P + GL + H
Sbjct: 1715 TSYTFRSEKGLLSATQF-TQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALAS- 1772
Query: 91 IMADALTI---IEHV---GRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEP 144
+AD ++I +E V G V G S M ++ P + + E
Sbjct: 1773 -LADVMSIESLVEVVFYRGMTMQVAVPRDELG----RSNYGMIAINPGRVAASFSQ--EA 1825
Query: 145 DKETVEKARKAGISKIEITND 165
+ VE+ K +EI N
Sbjct: 1826 LQYVVERVGKRTGWLVEIVNY 1846
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 3e-04
Identities = 36/249 (14%), Positives = 68/249 (27%), Gaps = 67/249 (26%)
Query: 37 MGKREETRDAAR---VLCRYNDII----MARVFGHQDILD-LAKFATVPVINGLTDYNHP 88
GK D V C+ + I + + +L+ L K N + +H
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 89 CQIMADALTIIEHVGRLEGTKVVY-----VGDGNNIVHSWLLMASVIPFHFVC------- 136
I +I + RL +K Y V N+ ++ A F+ C
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKP-YENCLLVLL--NVQNAKAWNA----FNLSCKILLTTR 273
Query: 137 -------------------ACPKGFEPDKETVEK-ARKAGISKIEITNDPKEVVQGADVV 176
PD E + ++ P+EV+
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDL---PREVLTTNPRR 329
Query: 177 YSDVWASMGQKEEAA----YRKQAFQGFQ--VDEFLMKLAGP---KAYFMHC--LPAERG 225
S + S+ ++ A ++ ++ L L P + F P
Sbjct: 330 LSIIAESI--RDGLATWDNWKHVNCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFPP--S 384
Query: 226 VEVTEGVIE 234
+ ++
Sbjct: 385 AHIPTILLS 393
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur
cluster, oxidoreductase, bacteriochlorophyll
biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus}
PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Length = 525
Score = 32.1 bits (73), Expect = 0.19
Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 13/138 (9%)
Query: 40 REETRDAARVLCRYNDI--IMARVFGHQD----ILDLAKFATVPVINGLTDYNHPCQIMA 93
E AAR L R G + +++K +PV+ + Q
Sbjct: 213 PETGESAARHLERACKQPFTKIVPIGVGATRDFLAEVSKITGLPVVTDESTLR---QPWW 269
Query: 94 DALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR 153
A L G +V GDG +++ + + A + F V E + A
Sbjct: 270 SASVDST---YLTGKRVFIFGDGTHVIAAARIAAKEVGFEVVGMGCYNREMARPLRTAAA 326
Query: 154 KAGISKIEITNDPKEVVQ 171
+ G+ + IT+D EV +
Sbjct: 327 EYGL-EALITDDYLEVEK 343
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown
function, plasmid, PSI-2, protein structure initiative;
1.50A {Deinococcus radiodurans}
Length = 254
Score = 31.0 bits (71), Expect = 0.30
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 142 FEPDKETVEKARKAGISK-IEITNDPKEVVQGADVV--YSDVWASMG 185
PD V +A + + +T P + VW ++G
Sbjct: 12 LYPDPVAVARACEERQLTVLSVTTTPAAWRGTLALAAGRPHVWTALG 58
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A
{Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Length = 281
Score = 30.2 bits (69), Expect = 0.62
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 141 GFEPDKETVEKARKAGISKIEITNDPKEVVQ-GADVV 176
G++ + E++ KA GI E T +V D V
Sbjct: 31 GYDINPESISKAVDLGIID-EGTTSIAKVEDFSPDFV 66
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
PDB: 3ggg_D* 3ggp_A*
Length = 314
Score = 29.9 bits (68), Expect = 0.65
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 141 GFEPDKETVEKARKAGISKIEITNDPKEVVQ-GADVV 176
G++ + E++ KA GI E T +V D V
Sbjct: 63 GYDINPESISKAVDLGIID-EGTTSIAKVEDFSPDFV 98
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas
aeruginosa PA01, PSI-2, structural genomics; HET: PG4;
2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A*
3q3c_A*
Length = 302
Score = 28.4 bits (64), Expect = 2.1
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 140 KGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVV 176
F+ + V+ AG ++ VQGADVV
Sbjct: 30 NVFDLVQSAVDGLVAAGA---SAARSARDAVQGADVV 63
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural
genomics, pyrococcus PSI-2, protein structure
initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm
3638}
Length = 373
Score = 28.5 bits (63), Expect = 2.1
Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 17/87 (19%)
Query: 103 GRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVE----KARKAGIS 158
G LE + +GD + S LM S +P + D+ + A + G
Sbjct: 169 GDLENKDIFVLGDDDLT--SIALMLSGLPKRIAV-----LDIDERLTKFIEKAANEIGYE 221
Query: 159 KIEITN-D-----PKEVVQGADVVYSD 179
IEI D P + D +D
Sbjct: 222 DIEIFTFDLRKPLPDYALHKFDTFITD 248
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Length = 312
Score = 28.6 bits (64), Expect = 2.2
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 144 PDKETVEKARKAGISKIEITNDPKEVVQGADVVYS 178
+ +A + G+ EV DV++S
Sbjct: 58 SAESWRPRAEELGV---SCKASVAEVAGECDVIFS 89
>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics,
structural genomics consortium, SGC, oxidoreductase;
2.38A {Homo sapiens} PDB: 2i9p_A*
Length = 296
Score = 28.4 bits (64), Expect = 2.4
Identities = 6/37 (16%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 140 KGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVV 176
++ + ++ + AG ++ + P +V + AD +
Sbjct: 27 IIYDVFPDACKEFQDAGE---QVVSSPADVAEKADRI 60
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 28.3 bits (62), Expect = 2.5
Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 120 VHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIE-ITNDPKEVVQGADVVYS 178
V L A + + S+ + IT DP+ + GADVV
Sbjct: 29 VRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISGADVVIL 88
Query: 179 DVWA 182
V A
Sbjct: 89 TVPA 92
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 26.7 bits (59), Expect = 2.6
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 133 HFVCACPKGFE 143
FVC CP+GF
Sbjct: 70 DFVCQCPEGFA 80
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP,
oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo
sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Length = 322
Score = 28.0 bits (63), Expect = 2.7
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 124 LLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVV 176
A V+ H + A + D TV RK G+ ++T KE VQ +DV+
Sbjct: 41 FTAAGVLAAHKIMASSP--DMDLATVSALRKMGV---KLTPHNKETVQHSDVL 88
>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
joint center for structural genomics, J protein
structure initiative; 2.10A {Streptococcus pneumoniae}
SCOP: c.108.1.6
Length = 207
Score = 27.5 bits (62), Expect = 3.7
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 9/49 (18%)
Query: 52 RYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIE 100
R D+ A+ + ++ + + NH Q +AD I E
Sbjct: 166 RTLDVEFAQN---------SGIQSINFLESTYEGNHRIQALADISRIFE 205
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer,
rossmann-fold NAD domain, human MU crystallin homolog;
HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13
PDB: 1vll_A
Length = 322
Score = 27.2 bits (61), Expect = 5.5
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Query: 126 MASVIPFHFVCACPKGFEPDKETVEK-ARKAGISKIEITNDPKEVVQGADVV 176
+ V V K ++ ++ +K I + P E DV+
Sbjct: 144 LRRVFDIGEV----KAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVL 191
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2,
protein structure initiative, no structural genomics
consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Length = 247
Score = 26.7 bits (60), Expect = 7.6
Identities = 8/54 (14%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 124 LLMASVIPFHFVCACPKGFEPDKETVEK-ARKAGISKIEITNDPKEVVQGADVV 176
++ +++ + + + + ++ + K G+ T D EV + AD++
Sbjct: 21 MINKNIVSSNQIICS----DLNTANLKNASEKYGL---TTTTDNNEVAKNADIL 67
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex,
oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP:
a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A*
1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A*
3hdh_A*
Length = 302
Score = 26.8 bits (60), Expect = 7.9
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 140 KGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVV 176
K F + + ++ + +S I + D VV D+V
Sbjct: 68 KKFAENPKAGDEFVEKTLSTIATSTDAASVVHSTDLV 104
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis,
oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Length = 280
Score = 26.7 bits (60), Expect = 8.7
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 125 LMASVIPFHFVCACPKGFEPDKETVEK-ARKAGISKIEITNDPKEVVQGADVV 176
L+A+ + +C + ++ K G+ T D ++ ADVV
Sbjct: 22 LIANGYDPNRICVT----NRSLDKLDFFKEKCGV---HTTQDNRQGALNADVV 67
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 26.4 bits (58), Expect = 9.0
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 141 GFEPDKETVEKARKAGISKIEITNDPKE 168
E +E + A+ I + E
Sbjct: 69 CVEASEEAISHAQGRLKDGITYIHSRFE 96
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family;
structural genomics, oxidoreductase, PSI-2; HET: UGA;
1.70A {Porphyromonas gingivalis}
Length = 450
Score = 26.7 bits (60), Expect = 9.0
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 145 DKETVEKARKAGISKIEITNDPKEVVQGADVV 176
D +++A+K K+E T D + V+GA+ +
Sbjct: 358 DPVAMKEAQKRLGDKVEYTTDMYDAVRGAEAL 389
Score = 26.7 bits (60), Expect = 9.9
Identities = 8/37 (21%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 142 FEPD-KETVEKARKAGISKIEITNDPKEVVQGADVVY 177
+EP ++ + + KAG ++ + ++ V AD+++
Sbjct: 49 YEPGLEKMIARNVKAG--RLRFGTEIEQAVPEADIIF 83
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain
enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Length = 301
Score = 26.4 bits (59), Expect = 9.5
Identities = 5/36 (13%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 141 GFEPDKETVEKARKAGISKIEITNDPKEVVQGADVV 176
F+ + V G + + ++V +D++
Sbjct: 32 AFDLMEANVAAVVAQGA---QACENNQKVAAASDII 64
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET:
NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Length = 649
Score = 26.6 bits (58), Expect = 9.7
Identities = 11/67 (16%), Positives = 20/67 (29%)
Query: 110 VVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEV 169
V+Y ++ LL P + + C + + R + I I+ DP
Sbjct: 261 VIYNKTLSDCSSEELLSQVENPENTIVICDDNGDFSDQMRIITRARLKAAIFISEDPGVF 320
Query: 170 VQGADVV 176
Sbjct: 321 RSATFPN 327
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.414
Gapped
Lambda K H
0.267 0.0821 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,138,728
Number of extensions: 257709
Number of successful extensions: 985
Number of sequences better than 10.0: 1
Number of HSP's gapped: 870
Number of HSP's successfully gapped: 84
Length of query: 261
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 169
Effective length of database: 4,133,061
Effective search space: 698487309
Effective search space used: 698487309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.2 bits)