RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 024871
(261 letters)
>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase
catalytic subunit {Escherichia coli [TaxId: 562]}
Length = 310
Score = 168 bits (426), Expect = 2e-51
Identities = 64/267 (23%), Positives = 97/267 (36%), Gaps = 12/267 (4%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQM--GKREETRDAARVLCRYNDIIM 58
++ F S RTR+SFET LG + K E D V+ Y D I+
Sbjct: 44 IASCFFAASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIV 103
Query: 59 ARVFGHQDILDLAKFAT-VPVINGLTDYN-HPCQIMADALTIIEHVGRLEGTKVVYVGDG 116
R +F+ VPV+N N HP Q + D TI E GRL+ V VGD
Sbjct: 104 MRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDL 163
Query: 117 NNIVHSW---LLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGA 173
+A F P + ++ + GI + + +EV+
Sbjct: 164 KYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGI-AWSLHSSIEEVMAEV 222
Query: 174 DVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVI 233
D++Y F + + A +H LP R E+ V
Sbjct: 223 DILYMTRVQKERLDPS--EYANVKAQFVLRASDLHNAKANMKVLHPLP--RVDEIATDVD 278
Query: 234 EAPYSIVFPQAENRMHAQNAIMLHALG 260
+ P++ F QA N + A+ A++ L
Sbjct: 279 KTPHAWYFQQAGNGIFARQALLALVLN 305
>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 163
Score = 153 bits (387), Expect = 2e-47
Identities = 75/159 (47%), Positives = 111/159 (69%), Gaps = 3/159 (1%)
Query: 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIE 161
++G KVVYVGDGNN+ HS ++ + + V A P+G+EPD++ ++ A + E
Sbjct: 2 IKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFE 61
Query: 162 ITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221
+ +DP + V+ ADV+Y+DVWASMGQ+ EA R++ F+ FQV++ L+K A P FMHCLP
Sbjct: 62 LLHDPVKAVKDADVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLP 121
Query: 222 AERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
A RG EVT+ VI++P S+V+ QAENR+HAQ A++ +G
Sbjct: 122 AHRGEEVTDDVIDSPNSVVWDQAENRLHAQKAVLALVMG 160
>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 132 bits (334), Expect = 2e-39
Identities = 65/159 (40%), Positives = 94/159 (59%), Gaps = 4/159 (2%)
Query: 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIE 161
L+G + ++GDGNNI+HS ++ A+ H A PKG+EPD + A + +K+
Sbjct: 2 LKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLL 61
Query: 162 ITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221
+TNDP E G +V+ +D W SMG++EE R QAFQG+QV K+A F+HCLP
Sbjct: 62 LTNDPLEAAHGGNVLITDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLP 121
Query: 222 AERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
+ EV + V +P S+VFP+AENR A+M+ L
Sbjct: 122 -RKPEEVDDEVFYSPRSLVFPEAENRKWTIMAVMVSLLT 159
>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 185
Score = 124 bits (313), Expect = 4e-36
Identities = 64/181 (35%), Positives = 86/181 (47%), Gaps = 25/181 (13%)
Query: 105 LEGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGIS---KI 160
L Y+GD NN+ +S LL+ + + A PK P E V + +K K+
Sbjct: 3 LHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKL 62
Query: 161 EITNDPKEVVQGADVVYSDVWASMGQKE--EAAYRKQAFQGFQVDEFLMKLAGPKAYFMH 218
+T DPKE V+G D V++DVW SMG+ K+ E + P+A FMH
Sbjct: 63 TLTEDPKEAVKGVDFVHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMH 122
Query: 219 CLPAER-------------------GVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHAL 259
CLPA G+EVTE V E+PY+I F QAENRMH AI++ L
Sbjct: 123 CLPAFHNSETKVGKQIAEQYPNLANGIEVTEDVFESPYNIAFEQAENRMHTIKAILVSTL 182
Query: 260 G 260
Sbjct: 183 A 183
>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase
catalytic subunit {Archaeon Sulfolobus acidocaldarius
[TaxId: 2285]}
Length = 153
Score = 116 bits (291), Expect = 4e-33
Identities = 26/158 (16%), Positives = 54/158 (34%), Gaps = 8/158 (5%)
Query: 105 LEGTKVVYVGDGNN--IVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEI 162
++G +GD V+S L + + V ++ + ++
Sbjct: 1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNY---PVKE 57
Query: 163 TNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPA 222
+P EV+ DV+Y + + ++ + V L + +H LP
Sbjct: 58 VENPFEVINEVDVLYVTRI-QKERFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPLP- 115
Query: 223 ERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
R E+ V + + F QA + + +I+ G
Sbjct: 116 -RVNEIDRKVDKTTKAKYFEQASYGVPVRMSILTKIYG 152
>d1pvva1 c.78.1.1 (A:1-150) Ornithine transcarbamoylase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 150
Score = 114 bits (286), Expect = 1e-32
Identities = 62/103 (60%), Positives = 78/103 (75%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++MIF KPS RTRVSFE + LGGHA+YL D+Q+ + E D ARVL RY D IMAR
Sbjct: 48 LAMIFQKPSTRTRVSFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMAR 107
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVG 103
V+ H+D+ DLAK+ATVPVINGL+D++HPCQ +AD +TI E G
Sbjct: 108 VYDHKDVEDLAKYATVPVINGLSDFSHPCQALADYMTIWEKKG 150
>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase
{Thermotoga maritima [TaxId: 2336]}
Length = 161
Score = 114 bits (285), Expect = 2e-32
Identities = 58/160 (36%), Positives = 96/160 (60%), Gaps = 5/160 (3%)
Query: 105 LEGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGIS---KI 160
L+G KVV++GD NN+ S ++ + + +FV P+ +P + ++ ++ +
Sbjct: 1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSV 60
Query: 161 EITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKL-AGPKAYFMHC 219
T++ +E + GADVVY+DVWASMG++++ R + +QV+E +M++ + FMHC
Sbjct: 61 SFTSNLEEALAGADVVYTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHC 120
Query: 220 LPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHAL 259
LPA +G EVT VIE S V+ +AENR H A+M+ L
Sbjct: 121 LPAVKGQEVTYEVIEGKQSRVWDEAENRKHTIKAVMIATL 160
>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase
catalytic subunit {Archaeon Pyrococcus abyssi [TaxId:
29292]}
Length = 157
Score = 114 bits (285), Expect = 3e-32
Identities = 39/160 (24%), Positives = 69/160 (43%), Gaps = 6/160 (3%)
Query: 104 RLEGTKVVYVGDG--NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIE 161
R++G K+ +GD VHS + P+ + VE+ R+ G+ K+
Sbjct: 1 RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGM-KVV 59
Query: 162 ITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221
T ++V+ DV+Y +E Y K +QV+ +++ A + MH LP
Sbjct: 60 ETTTLEDVIGKLDVLYVTRIQKERFPDEQEYLKVKGS-YQVNLKVLEKAKDELRIMHPLP 118
Query: 222 AERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALGL 261
R E+ V ++I F Q N + + A++ LG+
Sbjct: 119 --RVDEIHPEVDNTKHAIYFRQVFNGVPVRMALLALVLGV 156
>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase
{Escherichia coli [TaxId: 562]}
Length = 183
Score = 113 bits (283), Expect = 1e-31
Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 24/180 (13%)
Query: 105 LEGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR---KAGISKI 160
+VY GD NN+ +S L A++ P+ P+ V + R + I
Sbjct: 3 FNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNI 62
Query: 161 EITNDPKEVVQGADVVYSDVWASMGQKE--EAAYRKQAFQGFQVDEFLMKLAGPKAYFMH 218
+T D + V+GAD +Y+DVW SMG+ + A + + + P+ F+H
Sbjct: 63 TLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLH 122
Query: 219 CLPA------------------ERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
CLPA G+EVT+ V E+ SIVF QAENRMH A+M+ L
Sbjct: 123 CLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLS 182
>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase
catalytic subunit {Escherichia coli [TaxId: 562]}
Length = 160
Score = 105 bits (263), Expect = 6e-29
Identities = 29/159 (18%), Positives = 51/159 (32%), Gaps = 6/159 (3%)
Query: 104 RLEGTKVVYVGDGNN--IVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIE 161
RL+ V VGD VHS + + + +
Sbjct: 1 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWS 60
Query: 162 ITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221
+ + +EV+ D++Y F + + A +H LP
Sbjct: 61 LHSSIEEVMAEVDILYMTRVQKERLDPS--EYANVKAQFVLRASDLHNAKANMKVLHPLP 118
Query: 222 AERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
R E+ V + P++ F QA N + A+ A++ L
Sbjct: 119 --RVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLN 155
>d1js1x1 c.78.1.1 (X:1-163) Transcarbamylase-like protein
{Bacteroides fragilis [TaxId: 817]}
Length = 163
Score = 105 bits (262), Expect = 8e-29
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 22/123 (17%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDD------------IQMGKREETRDAAR 48
+ MIF S+RTR+S + LG + I L + + K E +A
Sbjct: 39 LLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIP 98
Query: 49 VLCRYNDIIMARVFGHQD----------ILDLAKFATVPVINGLTDYNHPCQIMADALTI 98
V+ Y DII R F + I + + PV + HP Q AD +TI
Sbjct: 99 VMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITI 158
Query: 99 IEH 101
E+
Sbjct: 159 EEY 161
>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein
{Bacteroides fragilis [TaxId: 817]}
Length = 161
Score = 104 bits (259), Expect = 2e-28
Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 10/144 (6%)
Query: 117 NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVV 176
+ +S+ + + FV P+G+E D + V + D + +GAD +
Sbjct: 19 QAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGN--------ARVEYDQMKAFEGADFI 70
Query: 177 YSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAP 236
Y+ WA+ D + AYFMHCLP R + VT+ VIE+P
Sbjct: 71 YAKNWAAYTGDNYGQILSTDRNWTVGDRQMAV--TNNAYFMHCLPVRRNMIVTDDVIESP 128
Query: 237 YSIVFPQAENRMHAQNAIMLHALG 260
SIV P+A NR + ++ L
Sbjct: 129 QSIVIPEAANREISATVVLKRLLE 152
>gi|154685965|ref|YP_001421126.1|(145-295:304) aspartate
carbamoyltransferase catalytic subunit [Bacillus
amyloliquefaciens FZB42]
gi|166234047|sp|A7Z4G9.1|PYRB_BACA2 RecName:
Full=Aspartate carbamoyltransferase; AltName:
Full=Aspartate transcarbamylase; Short=ATCase
gi|154351816|gb|ABS73895.1| PyrB [Bacillus
amyloliquefaciens FZB42] E=8e-68 s/c=1.71 id=80%
cov=101%
Length = 151
Score = 101 bits (253), Expect = 1e-27
Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 14/157 (8%)
Query: 106 EGTKVVYVGD--GNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEIT 163
+G V GD + + S + + + + + P ++ +K
Sbjct: 2 QGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPPQWQDEKNAFG-----------TC 50
Query: 164 NDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAE 223
E +Q +DVV + + EA + + + A MH P
Sbjct: 51 VQTDEAIQASDVVMLLRIQNERHQTEADQKGYLEAYGLTAKR-AESMKRHAIIMHPAPVN 109
Query: 224 RGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
RGVE+ ++E S +F Q EN ++ + A++ AL
Sbjct: 110 RGVEIDTTLVECGKSRIFKQMENGVYIRMAVLKRALQ 146
>d1otha1 c.78.1.1 (A:34-184) Ornithine transcarbamoylase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 151
Score = 101 bits (253), Expect = 1e-27
Identities = 53/101 (52%), Positives = 68/101 (67%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+ MIF K S RTR+S ETGF+LLGGH +L DI +G E D ARVL D ++AR
Sbjct: 49 LGMIFEKRSTRTRLSTETGFALLGGHPCFLTTQDIHLGVNESLTDTARVLSSMADAVLAR 108
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEH 101
V+ D+ LAK A++P+INGL+D HP QI+AD LT+ EH
Sbjct: 109 VYKQSDLDTLAKEASIPIINGLSDLYHPIQILADYLTLQEH 149
>d1dxha1 c.78.1.1 (A:1-150) Ornithine transcarbamoylase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 150
Score = 94.5 bits (234), Expect = 7e-25
Identities = 47/101 (46%), Positives = 63/101 (62%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+++IF K S RTR +FE G + Y+ P+ Q+G +E +D ARVL R D I R
Sbjct: 48 IALIFEKTSTRTRCAFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYR 107
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEH 101
F + + +LAKFA VPV NGLTD HP Q++AD LT+ EH
Sbjct: 108 GFKQEIVEELAKFAGVPVFNGLTDEYHPTQMLADVLTMREH 148
>d1duvg1 c.78.1.1 (G:1-150) Ornithine transcarbamoylase {Escherichia
coli [TaxId: 562]}
Length = 150
Score = 91.4 bits (226), Expect = 1e-23
Identities = 47/103 (45%), Positives = 64/103 (62%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+++IF K S RTR SFE G YLGP Q+G +E +D ARVL R D I R
Sbjct: 47 IALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYR 106
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVG 103
+G + + LA++A+VPV NGLT+ HP Q++AD LT+ EH+
Sbjct: 107 GYGQEIVETLAEYASVPVWNGLTNEFHPTQLLADLLTMQEHLP 149
>d1vlva1 c.78.1.1 (A:1-152) Ornithine transcarbamoylase {Thermotoga
maritima [TaxId: 2336]}
Length = 152
Score = 87.9 bits (217), Expect = 3e-22
Identities = 52/104 (50%), Positives = 70/104 (67%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++MIF K S RTR++FET F+ GGH I+L P+DI +G +E D ARVL R D IM R
Sbjct: 49 LAMIFEKRSTRTRLAFETAFAEEGGHPIFLSPNDIHLGAKESLEDTARVLGRMVDAIMFR 108
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGR 104
+ + + LA+++ VPV NGLTD HP Q +AD +TI E+ GR
Sbjct: 109 GYKQETVEKLAEYSGVPVYNGLTDEFHPTQALADLMTIEENFGR 152
>d1pg5a1 c.78.1.1 (A:1-146) Aspartate carbamoyltransferase catalytic
subunit {Archaeon Sulfolobus acidocaldarius [TaxId:
2285]}
Length = 146
Score = 86.4 bits (213), Expect = 8e-22
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIY-LGPDDIQMGKREETRDAARVLCRYNDIIMA 59
+S+ F +PS RT +SF+ LGG I G + + K E D R+L Y+D I+
Sbjct: 41 ISIAFFEPSTRTYLSFQKAIINLGGDVIGFSGEESTSVAKGENLADTIRMLNNYSDGIVM 100
Query: 60 RVFGHQDILDLAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVG 103
R ++ + +PVIN G + HP Q + D TI +H
Sbjct: 101 RHKYDGASRFASEISDIPVINAGDGKHEHPTQAVIDIYTINKHFN 145
>d1ekxa1 c.78.1.1 (A:1-150) Aspartate carbamoyltransferase catalytic
subunit {Escherichia coli [TaxId: 562]}
Length = 150
Score = 75.2 bits (184), Expect = 1e-17
Identities = 33/107 (30%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDI--QMGKREETRDAARVLCRYNDIIM 58
++ F + S RTR+SFET LG + K E D V+ Y D I+
Sbjct: 44 IASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIV 103
Query: 59 ARVFGHQDILDLAKFAT-VPVIN-GLTDYNHPCQIMADALTIIEHVG 103
R +F+ VPV+N G HP Q + D TI E G
Sbjct: 104 MRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQG 150
>d1ml4a1 c.78.1.1 (A:2-151) Aspartate carbamoyltransferase catalytic
subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 150
Score = 74.1 bits (181), Expect = 3e-17
Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIY-LGPDDIQMGKREETRDAARVLCRYNDIIMA 59
++ +F +PS RTR+SFE+ LGG I + K E RD + + +Y D+I+
Sbjct: 46 LATLFFEPSTRTRLSFESAMHRLGGAVIGFAEASTSSVKKGESLRDTIKTVEQYCDVIVI 105
Query: 60 RVFGHQDILDLAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVG 103
R A+ A VPVIN G HP Q + D TI + G
Sbjct: 106 RHPKEGAARLAAEVAEVPVINAGDGSNQHPTQTLLDLYTIKKEFG 150
>gi|154685965|ref|YP_001421126.1|(1-144:304) aspartate
carbamoyltransferase catalytic subunit [Bacillus
amyloliquefaciens FZB42]
gi|166234047|sp|A7Z4G9.1|PYRB_BACA2 RecName:
Full=Aspartate carbamoyltransferase; AltName:
Full=Aspartate transcarbamylase; Short=ATCase
gi|154351816|gb|ABS73895.1| PyrB [Bacillus
amyloliquefaciens FZB42] E=3e-60 s/c=1.62 id=76%
cov=101%
Length = 144
Score = 72.6 bits (177), Expect = 1e-16
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREET-RDAARVLCRYNDIIMA 59
++ +F +PS RTR SFE LG + + L + K E + D +
Sbjct: 39 VANLFFEPSTRTRFSFEVAEKKLGMNVLSLDDTSTSVQKGESLYDTVKTLESIGADACVI 98
Query: 60 RVFGHQDILDLAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVG 103
R + DL +P++N G HP Q + D +TI E
Sbjct: 99 RHSTDEYYKDLTGRVNIPILNAGDGCGQHPTQSLLDLMTIQEEFE 143
>d2uz9a1 b.92.1.4 (A:8-75,A:389-451) Guanine deaminase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 131
Score = 33.0 bits (75), Expect = 0.012
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 6/96 (6%)
Query: 40 REETRDAARVLCRYN-DIIMARVFGHQDI--LDLAKFATVPVINGLTDYNHPCQIMADAL 96
EE ++ + R H + ++ K +IN + P +
Sbjct: 38 LEEASQQEKLAKEWCFKPCEIRELSHHEFFMFEVGKEFDAILIN-PKASDSPIDLFYGDF 96
Query: 97 TIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPF 132
++ K +Y+GD NI ++ V+PF
Sbjct: 97 FGDISEAVIQ--KFLYLGDDRNIEEVYVGGKQVVPF 130
>d1ayoa_ b.2.4.1 (A:) alpha-2-macroglobulin {Cow (Bos taurus)
[TaxId: 9913]}
Length = 130
Score = 28.7 bits (64), Expect = 0.36
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 139 PKGFEPDKETVEKARKAGISKIEITND 165
GF P K TV+ ++ +S+ E++N+
Sbjct: 49 VSGFIPLKPTVKMLERSNVSRTEVSNN 75
>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic
domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 168
Score = 25.5 bits (55), Expect = 5.4
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 146 KETVEKARKAGISKIEITNDPKEVVQ 171
+++ R AGI I IT D K
Sbjct: 26 MGSIQLCRDAGIRVIMITGDNKGTAI 51
>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin
hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii
[TaxId: 2190]}
Length = 242
Score = 25.7 bits (56), Expect = 5.7
Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 140 KGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVY 177
+ +P K + + +++T+D +E V+GAD+V
Sbjct: 110 ELPKPPKACIHLVHPEDVG-LKVTSDDREAVEGADIVI 146
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid
dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId:
9606]}
Length = 203
Score = 25.1 bits (54), Expect = 7.2
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 9/66 (13%)
Query: 142 FEPDKETVEKARKAGIS---------KIEITNDPKEVVQGADVVYSDVWASMGQKEEAAY 192
F+PD E E + ++ + DP V+ G DV + V+ +
Sbjct: 5 FQPDPEPREYGQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYG 64
Query: 193 RKQAFQ 198
+ + F
Sbjct: 65 KDRVFN 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.414
Gapped
Lambda K H
0.267 0.0595 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 983,526
Number of extensions: 45994
Number of successful extensions: 227
Number of sequences better than 10.0: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 34
Length of query: 261
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 177
Effective length of database: 1,254,276
Effective search space: 222006852
Effective search space used: 222006852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.1 bits)