Your job contains 1 sequence.
>024872
MIFAARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNG
LAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQE
VARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLK
YDAFSASRVALCTSGTVAVELQLARLPCVVAYRAHFLTEWFIRYKAKIPYISLPNILLDS
PIIPEALLQACTPDTLTHLLM
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 024872
(261 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|SPO_1675 - symbol:SPO_1675 "lipid-A-disaccharide... 329 1.0e-29 1
UNIPROTKB|P10441 - symbol:lpxB species:83333 "Escherichia... 217 1.9e-17 1
UNIPROTKB|Q9KPW5 - symbol:lpxB "Lipid-A-disaccharide synt... 180 4.3e-12 1
TIGR_CMR|VC_2247 - symbol:VC_2247 "lipid-A-disaccharide s... 180 4.3e-12 1
TIGR_CMR|SO_1642 - symbol:SO_1642 "lipid A disaccharide s... 175 2.1e-11 1
TIGR_CMR|CJE_0336 - symbol:CJE_0336 "lipid-A-disaccharide... 130 7.0e-11 2
TIGR_CMR|CBU_0620 - symbol:CBU_0620 "lipid A disaccharide... 168 1.7e-10 1
TIGR_CMR|GSU_2261 - symbol:GSU_2261 "lipid A disaccharide... 160 1.8e-09 1
TIGR_CMR|CPS_1568 - symbol:CPS_1568 "lipid-A-disaccharide... 160 1.9e-09 1
>TIGR_CMR|SPO_1675 [details] [associations]
symbol:SPO_1675 "lipid-A-disaccharide synthase"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008915
"lipid-A-disaccharide synthase activity" evidence=ISS] [GO:0009245
"lipid A biosynthetic process" evidence=ISS] InterPro:IPR003835
Pfam:PF02684 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0009245
UniPathway:UPA00359 eggNOG:COG0763 HOGENOM:HOG000018004 KO:K00748
GO:GO:0008915 HAMAP:MF_00392 TIGRFAMs:TIGR00215 OMA:PTVWAWR
RefSeq:YP_166914.1 ProteinModelPortal:Q5LSU1 GeneID:3194064
KEGG:sil:SPO1675 PATRIC:23376675 ProtClustDB:CLSK933604
Uniprot:Q5LSU1
Length = 401
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 80/244 (32%), Positives = 125/244 (51%)
Query: 19 HYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELN 78
HYVAPS WAW+ G A +A +DH+L +LP E G+ FVGHPVV +
Sbjct: 130 HYVAPSVWAWRPGRA--DKMAKVIDHVLALLPFEPPYMERAGMECDFVGHPVVTE----- 182
Query: 79 LGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDS 138
PE + + + + A V+ LPGSR EV R+ P+F +
Sbjct: 183 ----PEATGADIAA----LRTELGL-GAAPVLLALPGSRRGEVERLAPVFGAALRRFLPE 233
Query: 139 FPELITVIHVAPNRHVENYITGLIQKWPVPSILV------PGGSSNLKYDAFSASRVALC 192
P++ V+ V P HV + + + +WP +LV P ++ K AF+A+ +AL
Sbjct: 234 HPDMRVVVPVVP--HVADQVAQQVAEWPGAPVLVDPRGLAPAQAAMRKRAAFAAADLALA 291
Query: 193 TSGTVAVELQLARLPCVVAYRAHFLTEWFIRYKAKIPYISLPNILLDSPIIPEALLQACT 252
SGTV++EL A P V+AY+ ++LT+ I ++L N++ ++ ++PE L ACT
Sbjct: 292 ASGTVSLELAAAGTPMVIAYKVNWLTQKIAERMVTIDTVTLVNLVSETRVVPECLGPACT 351
Query: 253 PDTL 256
P+ +
Sbjct: 352 PENI 355
>UNIPROTKB|P10441 [details] [associations]
symbol:lpxB species:83333 "Escherichia coli K-12"
[GO:0019897 "extrinsic to plasma membrane" evidence=IDA]
[GO:0005543 "phospholipid binding" evidence=IDA] [GO:0008915
"lipid-A-disaccharide synthase activity" evidence=IEA;IDA]
[GO:0009245 "lipid A biosynthetic process" evidence=IEA;IEP;IMP]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003835
Pfam:PF02684 GO:GO:0005543 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0019897
EMBL:U70214 EMBL:M19334 GO:GO:0009245 UniPathway:UPA00359 CAZy:GT19
eggNOG:COG0763 KO:K00748 GO:GO:0008915 HAMAP:MF_00392
TIGRFAMs:TIGR00215 HOGENOM:HOG000018003 OMA:PTVWAWR
ProtClustDB:PRK00025 PIR:F64742 RefSeq:NP_414724.1
RefSeq:YP_488484.1 ProteinModelPortal:P10441 DIP:DIP-10122N
IntAct:P10441 MINT:MINT-1246245 PaxDb:P10441 PRIDE:P10441
DNASU:944838 EnsemblBacteria:EBESCT00000000116
EnsemblBacteria:EBESCT00000014561 GeneID:12931876 GeneID:944838
KEGG:ecj:Y75_p0178 KEGG:eco:b0182 PATRIC:32115475 EchoBASE:EB0541
EcoGene:EG10546 BioCyc:EcoCyc:LIPIDADISACCHARIDESYNTH-MONOMER
BioCyc:ECOL316407:JW0177-MONOMER
BioCyc:MetaCyc:LIPIDADISACCHARIDESYNTH-MONOMER
Genevestigator:P10441 Uniprot:P10441
Length = 382
Score = 217 (81.4 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 54/159 (33%), Positives = 80/159 (50%)
Query: 103 VPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLI 162
+P A ++LLPGSR EV + F KT +LL+ ++P+L V+ + + E +
Sbjct: 187 IPHDAHCLALLPGSRGAEVEMLSADFLKTAQLLRQTYPDLEIVVPLVNAKRREQFERIKA 246
Query: 163 QKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAHFLTEWFI 222
+ P S+ + G +A AS AL SGT A+E LA+ P VV YR T W
Sbjct: 247 EVAPDLSVHLLDGMGR---EAMVASDAALLASGTAALECMLAKCPMVVGYRMKPFTFWLA 303
Query: 223 RYKAKIPYISLPNILLDSPIIPEALLQACTPDTLTHLLM 261
+ K Y+SLPN+L ++ E L + C P L L+
Sbjct: 304 KRLVKTDYVSLPNLLAGRELVKELLQEECEPQKLAAALL 342
Score = 151 (58.2 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 41/139 (29%), Positives = 69/139 (49%)
Query: 19 HYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELN 78
HYV+PS WAW+ + R+ + D +L LP E+A + F+GH + D + L+
Sbjct: 119 HYVSPSVWAWR--QKRVFKIGRATDLVLAFLPFEKAFYDKYNVPCRFIGHTMA-DAMPLD 175
Query: 79 LGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDS 138
K N+ ++ +P A ++LLPGSR EV + F KT +LL+ +
Sbjct: 176 PDK-----------NAA--RDVLGIPHDAHCLALLPGSRGAEVEMLSADFLKTAQLLRQT 222
Query: 139 FPELITVIHVAPNRHVENY 157
+P+L V+ + + E +
Sbjct: 223 YPDLEIVVPLVNAKRREQF 241
>UNIPROTKB|Q9KPW5 [details] [associations]
symbol:lpxB "Lipid-A-disaccharide synthase" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0008915
"lipid-A-disaccharide synthase activity" evidence=ISS] [GO:0009245
"lipid A biosynthetic process" evidence=ISS] InterPro:IPR003835
Pfam:PF02684 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0009245
UniPathway:UPA00359 CAZy:GT19 eggNOG:COG0763 KO:K00748
GO:GO:0008915 HAMAP:MF_00392 TIGRFAMs:TIGR00215 OMA:PTVWAWR
ProtClustDB:PRK00025 PIR:A82101 RefSeq:NP_231878.1
ProteinModelPortal:Q9KPW5 DNASU:2613169 GeneID:2613169
KEGG:vch:VC2247 PATRIC:20083537 Uniprot:Q9KPW5
Length = 379
Score = 180 (68.4 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 47/150 (31%), Positives = 75/150 (50%)
Query: 110 ISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWP-VP 168
+++LPGSR E+ + F T + L+ +P+L V+ + + + Q P +
Sbjct: 192 LAVLPGSRGSEMKMLAEPFIATCQKLQARYPDLGFVVALVNAKRRAQFEQAWQQVAPELN 251
Query: 169 SILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAHFLTEWFIRYKAKI 228
+LV + N+ +A+ + SGTVA+E L + P VV YR + T + + K
Sbjct: 252 FVLVDDTARNV----ITAADAVMLASGTVALECMLLKRPMVVGYRVNAFTAFLAKRLLKT 307
Query: 229 PYISLPNILLDSPIIPEALLQACTPDTLTH 258
PY+SLPNIL ++ E L CT D L H
Sbjct: 308 PYVSLPNILAGEELVKELLQDHCTVDNLYH 337
>TIGR_CMR|VC_2247 [details] [associations]
symbol:VC_2247 "lipid-A-disaccharide synthase" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0008915
"lipid-A-disaccharide synthase activity" evidence=ISS] [GO:0009245
"lipid A biosynthetic process" evidence=ISS] InterPro:IPR003835
Pfam:PF02684 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0009245
UniPathway:UPA00359 CAZy:GT19 eggNOG:COG0763 KO:K00748
GO:GO:0008915 HAMAP:MF_00392 TIGRFAMs:TIGR00215 OMA:PTVWAWR
ProtClustDB:PRK00025 PIR:A82101 RefSeq:NP_231878.1
ProteinModelPortal:Q9KPW5 DNASU:2613169 GeneID:2613169
KEGG:vch:VC2247 PATRIC:20083537 Uniprot:Q9KPW5
Length = 379
Score = 180 (68.4 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 47/150 (31%), Positives = 75/150 (50%)
Query: 110 ISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWP-VP 168
+++LPGSR E+ + F T + L+ +P+L V+ + + + Q P +
Sbjct: 192 LAVLPGSRGSEMKMLAEPFIATCQKLQARYPDLGFVVALVNAKRRAQFEQAWQQVAPELN 251
Query: 169 SILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAHFLTEWFIRYKAKI 228
+LV + N+ +A+ + SGTVA+E L + P VV YR + T + + K
Sbjct: 252 FVLVDDTARNV----ITAADAVMLASGTVALECMLLKRPMVVGYRVNAFTAFLAKRLLKT 307
Query: 229 PYISLPNILLDSPIIPEALLQACTPDTLTH 258
PY+SLPNIL ++ E L CT D L H
Sbjct: 308 PYVSLPNILAGEELVKELLQDHCTVDNLYH 337
>TIGR_CMR|SO_1642 [details] [associations]
symbol:SO_1642 "lipid A disaccharide synthase"
species:211586 "Shewanella oneidensis MR-1" [GO:0008915
"lipid-A-disaccharide synthase activity" evidence=ISS] [GO:0009245
"lipid A biosynthetic process" evidence=ISS] InterPro:IPR003835
Pfam:PF02684 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0009245
UniPathway:UPA00359 eggNOG:COG0763 KO:K00748 GO:GO:0008915
HAMAP:MF_00392 TIGRFAMs:TIGR00215 HOGENOM:HOG000018003 OMA:PTVWAWR
ProtClustDB:PRK00025 RefSeq:NP_717253.1 ProteinModelPortal:Q8EGG2
GeneID:1169436 KEGG:son:SO_1642 PATRIC:23522918 Uniprot:Q8EGG2
Length = 385
Score = 175 (66.7 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 46/170 (27%), Positives = 79/170 (46%)
Query: 87 ELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVI 146
++ +E + + + A +++LPGSR E+ ++ F K L+K FP++ V
Sbjct: 171 DIPLESDKACARQVLELDQEAEYLAILPGSRGGELKQLAEPFVKAALLIKQQFPDIRFVT 230
Query: 147 HVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARL 206
+ + E + L P I + G S + +A+ L SGT +E L +
Sbjct: 231 PLVNQKRREQFEQALKDHAPDLEIHMVEGKSR---EVMAAADGILLASGTATLEAMLIKR 287
Query: 207 PCVVAYRAHFLTEWFIRYKAKIPYISLPNILLDSPIIPEALLQACTPDTL 256
P VVAYR LT + ++ SLPN+L ++PE + CTP+ +
Sbjct: 288 PMVVAYRVSPLTYSIAKRMMQVNRFSLPNLLAGCDVVPELIQHDCTPEKI 337
Score = 143 (55.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 47/160 (29%), Positives = 74/160 (46%)
Query: 19 HYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDC-LEL 77
HYV+PS WAW+ R+ +A + +L +LP E+A + + TFVGH + +D LE
Sbjct: 119 HYVSPSVWAWR--PKRIFKIAKATNMVLSLLPFEKAFYDKHQVPCTFVGHTLADDIPLES 176
Query: 78 NLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKD 137
+ + EL E A +++LPGSR E+ ++ F K L+K
Sbjct: 177 DKACARQVLELDQE---------------AEYLAILPGSRGGELKQLAEPFVKAALLIKQ 221
Query: 138 SFPELITVIHVAPNRHVENYITGLIQKWPVPSI-LVPGGS 176
FP++ V + + E + L P I +V G S
Sbjct: 222 QFPDIRFVTPLVNQKRREQFEQALKDHAPDLEIHMVEGKS 261
>TIGR_CMR|CJE_0336 [details] [associations]
symbol:CJE_0336 "lipid-A-disaccharide synthetase"
species:195099 "Campylobacter jejuni RM1221" [GO:0008915
"lipid-A-disaccharide synthase activity" evidence=ISS] [GO:0009245
"lipid A biosynthetic process" evidence=ISS] InterPro:IPR003835
Pfam:PF02684 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0009245
UniPathway:UPA00359 RefSeq:YP_178356.1 ProteinModelPortal:Q5HWH9
STRING:Q5HWH9 CAZy:GT19 GeneID:3231098 KEGG:cjr:CJE0336
PATRIC:20042374 eggNOG:COG0763 HOGENOM:HOG000018004 KO:K00748
OMA:IARMLVN ProtClustDB:PRK14089 BioCyc:CJEJ195099:GJC0-341-MONOMER
GO:GO:0008915 HAMAP:MF_00392 TIGRFAMs:TIGR00215 Uniprot:Q5HWH9
Length = 364
Score = 130 (50.8 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 49/178 (27%), Positives = 84/178 (47%)
Query: 63 ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVA 122
+T++GHP+++ E+K N ED + +S I+ LPGSR E+
Sbjct: 157 STYIGHPLLD--------------EIKEFKNQEDINHTFSKKDDEKTIAFLPGSRRSEIR 202
Query: 123 RMLPIFAKTVELLKDSFPELITVIHVAPNRHVENY-ITGLIQKWPVPSILVPGGSSNLKY 181
R++PIF + + K +++ V P+ ++E + G I ++ + S P LK
Sbjct: 203 RLMPIFKELSQKFKGE--KILCV----PSFNLEKLEVYGDISEFKIESN-TP---KVLKK 252
Query: 182 DAFSASRVALCTSGTVAVELQLARLPCVVAYRAHFLTEWFIRYKAKIPYISLPNILLD 239
F+ +C SGT +E L P V+AY+A + + + K+ +I L NI D
Sbjct: 253 ADFAF----IC-SGTATLEAALVGTPFVLAYKAKAIDIFIAKLFVKLKHIGLANIFCD 305
Score = 84 (34.6 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 19 HYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLE 76
+Y+ P WAWK G R+ + + D + ILP + N +T++GHP++++ E
Sbjct: 119 YYILPQVWAWKKG--RIPIIESHFDILASILPFDNQF--FN--KSTYIGHPLLDEIKE 170
>TIGR_CMR|CBU_0620 [details] [associations]
symbol:CBU_0620 "lipid A disaccharide synthase"
species:227377 "Coxiella burnetii RSA 493" [GO:0008915
"lipid-A-disaccharide synthase activity" evidence=ISS] [GO:0009245
"lipid A biosynthetic process" evidence=ISS] InterPro:IPR003835
Pfam:PF02684 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0009245
UniPathway:UPA00359 eggNOG:COG0763 HOGENOM:HOG000018004 KO:K00748
OMA:IARMLVN GO:GO:0008915 HAMAP:MF_00392 TIGRFAMs:TIGR00215
ProtClustDB:PRK00025 RefSeq:NP_819650.1 ProteinModelPortal:Q83DS5
GeneID:1208505 KEGG:cbu:CBU_0620 PATRIC:17929925
BioCyc:CBUR227377:GJ7S-618-MONOMER Uniprot:Q83DS5
Length = 376
Score = 168 (64.2 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 40/157 (25%), Positives = 83/157 (52%)
Query: 100 KYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYIT 159
++++ +++L PGSR QE+ ++LP+ + +L++ P + ++ +A N ++
Sbjct: 181 QFNLDPDKPIVALFPGSREQEINKLLPMMVQAGKLIQTQIPTVQFILPLALNLALDK--- 237
Query: 160 GLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAHFLTE 219
I+ + P I V +++ Y + + A+ SGTV +E+ L ++P V+ Y+ LT
Sbjct: 238 --IRPFLSPEIKVI--QNDISY-VLAIAHAAVAASGTVTLEIALQQVPLVIIYKVAPLTF 292
Query: 220 WFIRYKAKIPYISLPNILLDSPIIPEALLQACTPDTL 256
W + ++ +I L N++ P+ E L Q TP +
Sbjct: 293 WLGKKLIRLSFIGLCNLVSPEPVAVELLQQDATPQAI 329
Score = 160 (61.4 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 36/133 (27%), Positives = 69/133 (51%)
Query: 19 HYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELN 78
+YV+P WAW+ G R+K + +VDH+ + EE + + + +FVGHP
Sbjct: 116 YYVSPQIWAWRYG--RIKKIKKYVDHMAVLFDFEEKLYQKENVPVSFVGHP--------- 164
Query: 79 LGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDS 138
L P P + N + ++++ +++L PGSR QE+ ++LP+ + +L++
Sbjct: 165 LANAPTP---SLSRN--EICKQFNLDPDKPIVALFPGSREQEINKLLPMMVQAGKLIQTQ 219
Query: 139 FPELITVIHVAPN 151
P + ++ +A N
Sbjct: 220 IPTVQFILPLALN 232
>TIGR_CMR|GSU_2261 [details] [associations]
symbol:GSU_2261 "lipid A disaccharide synthase (lpxB)"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008915
"lipid-A-disaccharide synthase activity" evidence=ISS] [GO:0009245
"lipid A biosynthetic process" evidence=ISS] InterPro:IPR003835
Pfam:PF02684 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0009245
UniPathway:UPA00359 eggNOG:COG0763 HOGENOM:HOG000018004 KO:K00748
OMA:IARMLVN GO:GO:0008915 HAMAP:MF_00392 TIGRFAMs:TIGR00215
ProtClustDB:PRK00025 RefSeq:NP_953310.1 ProteinModelPortal:Q74AT9
GeneID:2685733 KEGG:gsu:GSU2261 PATRIC:22027377
BioCyc:GSUL243231:GH27-2256-MONOMER Uniprot:Q74AT9
Length = 384
Score = 160 (61.4 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 35/139 (25%), Positives = 70/139 (50%)
Query: 11 RLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLAATFVGHPV 70
R +G +Y++P WAW+ G R+K + VD + + P E G+ +FVGHP+
Sbjct: 111 RRHGVKVLYYISPQVWAWRTG--RVKTIGRLVDRMAVVFPFEVPFYERAGVPVSFVGHPL 168
Query: 71 VEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAK 130
D + +G+ ++ + + G V+ L PGSR E+A++ P+ +
Sbjct: 169 A-DRVRPTMGR-------------DEALASFGLDPGRRVVGLFPGSRRGEIAKLFPVILE 214
Query: 131 TVELLKDSFPELITVIHVA 149
+ + L++ +P++ ++ +A
Sbjct: 215 SAQQLRERYPDIQFILPLA 233
Score = 147 (56.8 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 35/156 (22%), Positives = 77/156 (49%)
Query: 101 YSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITG 160
+ + G V+ L PGSR E+A++ P+ ++ + L++ +P++ ++ +A + + I
Sbjct: 185 FGLDPGRRVVGLFPGSRRGEIAKLFPVILESAQQLRERYPDIQFILPLASSL-TDGDIAP 243
Query: 161 LIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAHFLTEW 220
L+ + + V + + YD + SGTV +E+ L +P V+ Y+ LT
Sbjct: 244 LLAASGL-DVTV---TQDRVYDVMQVCDAIITVSGTVTLEIALMGVPMVIIYKVSPLTYQ 299
Query: 221 FIRYKAKIPYISLPNILLDSPIIPEALLQACTPDTL 256
+ ++ +I + NI+ ++PE + + D +
Sbjct: 300 VGKRLIRVDHIGICNIVAGERVVPELIQDDASADRI 335
>TIGR_CMR|CPS_1568 [details] [associations]
symbol:CPS_1568 "lipid-A-disaccharide synthase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008915
"lipid-A-disaccharide synthase activity" evidence=ISS] [GO:0009245
"lipid A biosynthetic process" evidence=ISS] InterPro:IPR003835
Pfam:PF02684 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009245
UniPathway:UPA00359 CAZy:GT19 eggNOG:COG0763 KO:K00748
GO:GO:0008915 HAMAP:MF_00392 TIGRFAMs:TIGR00215 RefSeq:YP_268310.1
ProteinModelPortal:Q485F5 STRING:Q485F5 GeneID:3523039
KEGG:cps:CPS_1568 PATRIC:21466341 HOGENOM:HOG000018003 OMA:PTVWAWR
ProtClustDB:PRK00025 BioCyc:CPSY167879:GI48-1649-MONOMER
Uniprot:Q485F5
Length = 393
Score = 160 (61.4 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 40/135 (29%), Positives = 71/135 (52%)
Query: 11 RLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLAATFVGHPV 70
++ G HYV+PS WAW+ E R+ +A D +L +LP E+A + + TFVGHP+
Sbjct: 116 KVKGIKTVHYVSPSVWAWR--EKRIFKIAKATDMVLALLPFEKAFYDKHNVPCTFVGHPL 173
Query: 71 VEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAK 130
+D + M+ + ++K + +++L+PGSR E++R+L F +
Sbjct: 174 ADD--------------IPMQSDKVLARDKLGLAQDKKILALMPGSRGGELSRLLEDFFE 219
Query: 131 TVELLKDSFPELITV 145
+ + L+ EL+ V
Sbjct: 220 SAKQLQAQDSELLFV 234
Score = 156 (60.0 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 43/174 (24%), Positives = 84/174 (48%)
Query: 87 ELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVI 146
++ M+ + ++K + +++L+PGSR E++R+L F ++ + L+ EL+ V
Sbjct: 176 DIPMQSDKVLARDKLGLAQDKKILALMPGSRGGELSRLLEDFFESAKQLQAQDSELLFVA 235
Query: 147 HVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARL 206
+ + + + P I + N +AS L SGTV +E L +
Sbjct: 236 PMISEQRANQFNALKAELAPDLDIEIV---LNQTQQVMAASDCLLTASGTVTLEAALIKR 292
Query: 207 PCVVAYRAHFLTEWFIRYKAKIPYISLPNILLDSPIIPEALLQACTPDTLTHLL 260
P V+ Y+ +T + R K+ + SLPN+L + ++PE L + P+ + L+
Sbjct: 293 PMVICYKFSPITFFLGRRFVKLKWFSLPNLLTNKSLVPELLQKDVCPENIVPLV 346
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.138 0.430 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 261 261 0.00090 114 3 11 22 0.43 33
32 0.49 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 9
No. of states in DFA: 615 (65 KB)
Total size of DFA: 207 KB (2115 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.95u 0.08s 23.03t Elapsed: 00:00:01
Total cpu time: 22.95u 0.08s 23.03t Elapsed: 00:00:01
Start: Sat May 11 05:11:55 2013 End: Sat May 11 05:11:56 2013