Query 024872
Match_columns 261
No_of_seqs 168 out of 1371
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 08:03:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024872.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024872hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02684 LpxB: Lipid-A-disacch 100.0 3.6E-60 7.8E-65 432.0 22.5 235 5-260 99-334 (373)
2 COG0763 LpxB Lipid A disacchar 100.0 5.5E-59 1.2E-63 416.6 20.8 233 5-260 102-338 (381)
3 PRK01021 lpxB lipid-A-disaccha 100.0 7.5E-56 1.6E-60 418.7 24.1 231 5-260 327-566 (608)
4 PRK14089 ipid-A-disaccharide s 100.0 1.6E-52 3.5E-57 379.6 20.2 216 5-260 93-313 (347)
5 TIGR00215 lpxB lipid-A-disacch 100.0 5.2E-48 1.1E-52 356.6 25.2 233 6-260 107-341 (385)
6 PRK00025 lpxB lipid-A-disaccha 100.0 3.4E-35 7.5E-40 269.4 25.4 232 6-260 103-335 (380)
7 TIGR03492 conserved hypothetic 100.0 1.5E-28 3.3E-33 227.6 20.3 199 9-235 109-348 (396)
8 PRK12446 undecaprenyldiphospho 99.9 4.3E-22 9.3E-27 182.0 18.9 207 6-260 107-319 (352)
9 COG0707 MurG UDP-N-acetylgluco 99.9 4.7E-22 1E-26 181.3 16.5 202 7-247 108-314 (357)
10 PRK13608 diacylglycerol glucos 99.8 1.7E-19 3.7E-24 166.9 15.4 171 12-215 126-303 (391)
11 PRK13609 diacylglycerol glucos 99.8 4.4E-19 9.5E-24 163.0 15.0 169 13-214 127-302 (380)
12 PLN02605 monogalactosyldiacylg 99.8 2.1E-17 4.5E-22 152.4 18.2 155 39-213 148-310 (382)
13 cd03786 GT1_UDP-GlcNAc_2-Epime 99.7 1.6E-16 3.5E-21 144.5 15.4 189 4-214 103-305 (363)
14 TIGR01133 murG undecaprenyldip 99.7 5.9E-16 1.3E-20 139.9 18.1 172 5-213 105-278 (348)
15 TIGR00236 wecB UDP-N-acetylglu 99.7 2E-15 4.3E-20 138.1 18.8 197 3-215 100-303 (365)
16 PRK00726 murG undecaprenyldiph 99.7 7.4E-15 1.6E-19 133.7 19.9 173 5-213 106-280 (357)
17 cd03785 GT1_MurG MurG is an N- 99.6 2.1E-14 4.6E-19 129.8 17.4 174 5-212 104-279 (350)
18 PRK15484 lipopolysaccharide 1, 99.5 1.7E-12 3.6E-17 119.8 17.3 163 40-221 138-316 (380)
19 TIGR03449 mycothiol_MshA UDP-N 99.4 5.1E-12 1.1E-16 116.7 17.3 165 38-221 160-341 (405)
20 cd03819 GT1_WavL_like This fam 99.4 1.2E-11 2.6E-16 111.1 17.8 195 7-221 95-303 (355)
21 TIGR02149 glgA_Coryne glycogen 99.4 1.4E-11 3E-16 112.7 18.1 163 38-221 141-319 (388)
22 TIGR03088 stp2 sugar transfera 99.4 3E-11 6.5E-16 110.3 17.5 197 6-221 96-311 (374)
23 cd03812 GT1_CapH_like This fam 99.4 4.5E-11 9.9E-16 107.5 18.3 163 38-221 134-305 (358)
24 PRK10307 putative glycosyl tra 99.4 2.3E-11 5.1E-16 112.9 16.8 159 38-214 168-340 (412)
25 PLN02501 digalactosyldiacylgly 99.4 5.4E-12 1.2E-16 122.1 12.2 146 42-212 499-649 (794)
26 TIGR02095 glgA glycogen/starch 99.4 3.3E-11 7.1E-16 114.2 17.1 176 38-221 202-404 (473)
27 cd04962 GT1_like_5 This family 99.4 4.6E-11 1E-15 108.2 17.4 161 38-221 139-309 (371)
28 cd05844 GT1_like_7 Glycosyltra 99.3 4.2E-11 9E-16 108.4 16.7 193 38-260 139-364 (367)
29 PRK00654 glgA glycogen synthas 99.3 2.2E-11 4.8E-16 115.3 14.6 175 38-220 194-394 (466)
30 PRK05749 3-deoxy-D-manno-octul 99.3 2E-11 4.3E-16 114.0 13.8 188 8-218 143-357 (425)
31 PLN02871 UDP-sulfoquinovose:DA 99.3 8.8E-11 1.9E-15 111.1 17.6 158 38-221 202-370 (465)
32 cd03807 GT1_WbnK_like This fam 99.3 2E-10 4.4E-15 101.8 18.4 165 38-222 133-308 (365)
33 cd03817 GT1_UGDG_like This fam 99.3 1.8E-10 3.9E-15 102.7 17.8 163 38-221 145-317 (374)
34 cd03813 GT1_like_3 This family 99.3 5.5E-11 1.2E-15 112.9 14.9 157 39-222 242-410 (475)
35 cd03821 GT1_Bme6_like This fam 99.3 1.9E-10 4.1E-15 102.4 17.3 164 39-221 147-320 (375)
36 cd03798 GT1_wlbH_like This fam 99.3 3.2E-10 6.9E-15 100.5 18.5 193 8-222 112-318 (377)
37 PLN02275 transferase, transfer 99.3 1.2E-10 2.6E-15 107.1 15.9 190 3-219 116-346 (371)
38 cd03792 GT1_Trehalose_phosphor 99.3 1.2E-10 2.6E-15 106.5 15.5 124 94-221 177-312 (372)
39 PRK14098 glycogen synthase; Pr 99.3 1.5E-10 3.2E-15 110.4 15.8 171 39-217 218-416 (489)
40 cd03811 GT1_WabH_like This fam 99.3 4.2E-10 9.2E-15 98.9 17.2 185 13-222 104-303 (353)
41 cd04951 GT1_WbdM_like This fam 99.3 3.6E-10 7.9E-15 101.4 17.0 161 39-219 128-299 (360)
42 PLN02316 synthase/transferase 99.2 3.2E-10 7E-15 114.8 18.0 195 13-221 738-958 (1036)
43 cd03814 GT1_like_2 This family 99.2 2.9E-10 6.2E-15 101.5 15.9 160 37-221 140-305 (364)
44 PRK15427 colanic acid biosynth 99.2 5E-10 1.1E-14 104.3 17.5 158 36-221 169-343 (406)
45 PF04101 Glyco_tran_28_C: Glyc 99.2 2.8E-12 6E-17 104.9 1.6 97 109-212 1-99 (167)
46 PRK14099 glycogen synthase; Pr 99.2 2.4E-10 5.2E-15 108.9 14.9 175 36-219 204-406 (485)
47 cd03800 GT1_Sucrose_synthase T 99.2 7.6E-10 1.6E-14 101.0 17.7 166 38-221 160-341 (398)
48 PRK15179 Vi polysaccharide bio 99.2 4.7E-10 1E-14 110.6 17.1 111 103-221 513-630 (694)
49 TIGR03590 PseG pseudaminic aci 99.2 2.7E-10 5.8E-15 101.1 13.7 97 107-212 171-267 (279)
50 cd03816 GT1_ALG1_like This fam 99.2 7E-10 1.5E-14 103.6 17.1 168 38-221 157-356 (415)
51 TIGR03568 NeuC_NnaA UDP-N-acet 99.2 7.3E-10 1.6E-14 101.9 16.9 191 4-212 108-307 (365)
52 cd03822 GT1_ecORF704_like This 99.2 8.2E-10 1.8E-14 98.7 16.8 160 36-216 129-303 (366)
53 cd03796 GT1_PIG-A_like This fa 99.2 6.1E-10 1.3E-14 103.0 16.4 156 38-221 141-308 (398)
54 COG0381 WecB UDP-N-acetylgluco 99.2 7.3E-10 1.6E-14 100.7 15.1 195 3-214 106-309 (383)
55 COG4370 Uncharacterized protei 99.2 3.1E-11 6.8E-16 105.6 5.7 163 39-223 176-349 (412)
56 cd03801 GT1_YqgM_like This fam 99.2 3.7E-09 8.1E-14 93.1 19.1 164 37-222 140-315 (374)
57 cd03825 GT1_wcfI_like This fam 99.2 4.2E-10 9.1E-15 101.2 13.2 157 41-221 135-303 (365)
58 PHA01630 putative group 1 glyc 99.2 4.8E-10 1E-14 101.8 13.6 175 6-221 63-248 (331)
59 PRK15490 Vi polysaccharide bio 99.2 6.9E-10 1.5E-14 106.0 14.5 113 101-221 392-511 (578)
60 PF02350 Epimerase_2: UDP-N-ac 99.1 9E-11 1.9E-15 107.2 7.8 192 3-211 81-283 (346)
61 cd03818 GT1_ExpC_like This fam 99.1 7.7E-10 1.7E-14 102.2 13.9 167 39-221 154-339 (396)
62 cd03791 GT1_Glycogen_synthase_ 99.1 6.3E-10 1.4E-14 105.2 13.6 175 38-220 207-408 (476)
63 cd03823 GT1_ExpE7_like This fa 99.1 3.6E-09 7.8E-14 94.0 17.0 178 8-222 116-303 (359)
64 cd03805 GT1_ALG2_like This fam 99.1 2.6E-09 5.6E-14 97.8 16.5 165 39-222 152-339 (392)
65 PLN02846 digalactosyldiacylgly 99.1 7.9E-10 1.7E-14 104.2 13.2 98 108-212 229-331 (462)
66 cd03820 GT1_amsD_like This fam 99.1 2E-09 4.3E-14 94.6 14.5 145 37-212 131-283 (348)
67 cd03799 GT1_amsK_like This is 99.1 4.1E-09 9E-14 94.4 16.6 189 4-221 94-300 (355)
68 cd03794 GT1_wbuB_like This fam 99.1 6.3E-09 1.4E-13 92.9 16.5 163 38-221 162-338 (394)
69 cd03808 GT1_cap1E_like This fa 99.1 9.1E-09 2E-13 90.8 16.6 155 38-221 135-302 (359)
70 PLN02939 transferase, transfer 99.0 2E-09 4.4E-14 107.7 13.0 120 93-219 762-893 (977)
71 cd04955 GT1_like_6 This family 99.0 1.1E-08 2.3E-13 92.1 15.6 154 39-218 141-304 (363)
72 PHA01633 putative glycosyl tra 99.0 1.2E-08 2.6E-13 92.7 15.5 162 34-219 85-260 (335)
73 PRK09922 UDP-D-galactose:(gluc 99.0 9.2E-09 2E-13 93.9 14.6 151 40-221 132-297 (359)
74 TIGR02472 sucr_P_syn_N sucrose 99.0 1.3E-08 2.7E-13 95.8 15.8 208 38-260 181-434 (439)
75 TIGR02918 accessory Sec system 99.0 7.3E-09 1.6E-13 99.1 14.3 150 39-221 268-432 (500)
76 cd03795 GT1_like_4 This family 99.0 2.7E-08 5.8E-13 89.1 16.9 160 36-221 132-304 (357)
77 TIGR02470 sucr_synth sucrose s 99.0 2.3E-08 5E-13 99.3 17.3 120 97-221 538-682 (784)
78 PLN00142 sucrose synthase 99.0 3.6E-08 7.8E-13 98.0 17.6 120 98-221 562-705 (815)
79 TIGR02468 sucrsPsyn_pln sucros 99.0 1.5E-08 3.2E-13 102.8 15.0 116 100-221 472-610 (1050)
80 TIGR03087 stp1 sugar transfera 98.9 1.8E-08 3.8E-13 93.3 13.7 147 38-212 169-329 (397)
81 PF00534 Glycos_transf_1: Glyc 98.9 2E-08 4.3E-13 81.6 12.2 122 94-221 2-131 (172)
82 cd03809 GT1_mtfB_like This fam 98.9 1.4E-08 3.1E-13 90.7 11.5 163 36-219 135-309 (365)
83 PF04007 DUF354: Protein of un 98.9 3.6E-08 7.8E-13 89.5 13.2 186 4-223 95-287 (335)
84 cd03806 GT1_ALG11_like This fa 98.9 4.9E-08 1.1E-12 91.4 14.1 155 39-217 187-360 (419)
85 cd04946 GT1_AmsK_like This fam 98.8 1.5E-07 3.2E-12 87.7 16.8 155 38-222 180-350 (407)
86 cd04949 GT1_gtfA_like This fam 98.8 8.1E-08 1.8E-12 87.5 13.4 153 39-221 155-318 (372)
87 PLN02949 transferase, transfer 98.8 1.1E-07 2.3E-12 90.3 13.6 152 40-215 219-388 (463)
88 cd04950 GT1_like_1 Glycosyltra 98.7 1.9E-07 4.1E-12 85.9 13.1 151 36-211 148-308 (373)
89 cd03804 GT1_wbaZ_like This fam 98.7 2.2E-07 4.8E-12 84.0 13.2 143 39-221 151-299 (351)
90 cd03802 GT1_AviGT4_like This f 98.7 4.7E-07 1E-11 80.6 14.9 209 9-260 103-330 (335)
91 TIGR00661 MJ1255 conserved hyp 98.7 3.2E-07 7E-12 82.8 12.1 105 104-228 185-291 (321)
92 PF13528 Glyco_trans_1_3: Glyc 98.6 3.5E-07 7.6E-12 81.8 10.3 115 107-246 193-309 (318)
93 TIGR01426 MGT glycosyltransfer 98.6 6.3E-07 1.4E-11 82.8 12.0 110 105-228 223-333 (392)
94 cd03788 GT1_TPS Trehalose-6-Ph 98.6 9.9E-08 2.1E-12 90.4 6.7 106 99-207 256-386 (460)
95 PRK10125 putative glycosyl tra 98.5 3E-07 6.5E-12 85.8 8.5 147 41-221 190-345 (405)
96 COG1817 Uncharacterized protei 98.4 6.3E-06 1.4E-10 73.0 12.9 179 5-214 97-280 (346)
97 COG4671 Predicted glycosyl tra 98.4 8.5E-06 1.8E-10 73.3 13.8 136 104-260 217-359 (400)
98 TIGR02400 trehalose_OtsA alpha 98.4 2.5E-06 5.3E-11 80.9 11.0 113 97-217 252-394 (456)
99 cd03793 GT1_Glycogen_synthase_ 98.4 1.6E-05 3.4E-10 76.6 15.6 95 38-137 223-326 (590)
100 cd01635 Glycosyltransferase_GT 98.3 8.9E-06 1.9E-10 67.5 11.0 92 123-217 117-216 (229)
101 cd03784 GT1_Gtf_like This fami 98.3 4.9E-06 1.1E-10 76.9 9.4 108 104-227 236-345 (401)
102 KOG1111 N-acetylglucosaminyltr 98.2 7.9E-06 1.7E-10 73.6 10.1 102 108-216 196-305 (426)
103 COG3660 Predicted nucleoside-d 98.2 7.9E-05 1.7E-09 64.7 15.1 181 3-215 83-275 (329)
104 COG3980 spsG Spore coat polysa 98.2 2.1E-05 4.5E-10 68.9 11.0 95 106-211 158-252 (318)
105 PF13844 Glyco_transf_41: Glyc 98.2 1.7E-05 3.7E-10 74.8 10.7 134 97-240 275-416 (468)
106 PF13692 Glyco_trans_1_4: Glyc 98.1 1.7E-05 3.7E-10 61.7 8.9 79 124-211 16-101 (135)
107 COG0297 GlgA Glycogen synthase 98.1 2.1E-05 4.5E-10 74.8 10.5 124 92-221 277-407 (487)
108 cd03789 GT1_LPS_heptosyltransf 98.1 2.2E-05 4.8E-10 69.3 9.9 109 107-220 121-232 (279)
109 COG1519 KdtA 3-deoxy-D-manno-o 98.1 7.9E-05 1.7E-09 68.8 13.2 196 8-226 142-362 (419)
110 PF04464 Glyphos_transf: CDP-G 98.0 3.5E-05 7.6E-10 70.7 8.7 161 36-216 129-298 (369)
111 TIGR02398 gluc_glyc_Psyn gluco 97.9 0.00014 2.9E-09 69.4 10.9 120 95-221 276-424 (487)
112 PLN03063 alpha,alpha-trehalose 97.8 9.4E-05 2E-09 74.7 10.0 107 106-216 278-413 (797)
113 TIGR03609 S_layer_CsaB polysac 97.8 0.0025 5.4E-08 56.8 16.9 187 7-219 94-283 (298)
114 TIGR02195 heptsyl_trn_II lipop 97.5 0.0012 2.7E-08 59.6 11.9 114 97-215 164-280 (334)
115 PRK14501 putative bifunctional 97.5 0.00032 7E-09 70.3 8.6 100 105-207 263-387 (726)
116 COG0859 RfaF ADP-heptose:LPS h 97.5 0.0011 2.4E-08 60.3 10.9 105 107-216 175-281 (334)
117 PF01075 Glyco_transf_9: Glyco 97.4 0.0013 2.8E-08 56.7 10.2 109 104-217 102-214 (247)
118 COG1819 Glycosyl transferases, 97.3 0.0015 3.2E-08 61.2 10.1 93 103-211 233-326 (406)
119 PF06258 Mito_fiss_Elm1: Mitoc 97.3 0.0034 7.4E-08 56.7 11.8 176 3-212 70-256 (311)
120 PRK09814 beta-1,6-galactofuran 97.3 0.0075 1.6E-07 54.6 14.3 141 36-223 118-277 (333)
121 COG0438 RfaG Glycosyltransfera 97.3 0.0051 1.1E-07 53.0 12.6 108 108-221 200-315 (381)
122 KOG3349 Predicted glycosyltran 97.3 0.004 8.6E-08 49.9 10.4 113 108-226 4-124 (170)
123 PF05159 Capsule_synth: Capsul 97.3 0.0022 4.8E-08 56.4 9.9 81 127-211 141-224 (269)
124 PRK10916 ADP-heptose:LPS hepto 97.2 0.005 1.1E-07 56.1 11.7 112 97-213 170-288 (348)
125 COG3914 Spy Predicted O-linked 97.1 0.0053 1.2E-07 58.8 11.0 136 96-239 419-562 (620)
126 TIGR02193 heptsyl_trn_I lipopo 97.0 0.0084 1.8E-07 53.8 11.4 140 101-260 173-315 (319)
127 TIGR02201 heptsyl_trn_III lipo 96.8 0.017 3.6E-07 52.5 11.6 105 106-214 180-288 (344)
128 PRK10422 lipopolysaccharide co 96.8 0.016 3.5E-07 52.9 11.0 104 106-213 182-289 (352)
129 PHA03392 egt ecdysteroid UDP-g 96.7 0.023 4.9E-07 54.8 12.3 89 107-211 296-390 (507)
130 TIGR02094 more_P_ylases alpha- 96.6 0.036 7.7E-07 54.5 12.7 108 103-213 385-511 (601)
131 KOG0853 Glycosyltransferase [C 96.6 0.0048 1E-07 58.6 6.3 92 125-216 288-400 (495)
132 PRK10964 ADP-heptose:LPS hepto 96.3 0.04 8.6E-07 49.6 10.6 101 106-213 177-280 (322)
133 PRK02797 4-alpha-L-fucosyltran 96.3 0.043 9.3E-07 49.2 10.4 105 115-223 152-267 (322)
134 PF04230 PS_pyruv_trans: Polys 96.2 0.25 5.4E-06 42.1 14.5 180 7-211 94-282 (286)
135 TIGR02919 accessory Sec system 96.2 0.033 7.1E-07 52.7 9.5 82 127-213 292-378 (438)
136 PRK10017 colanic acid biosynth 96.1 0.53 1.1E-05 44.4 16.9 171 36-221 171-362 (426)
137 PF07429 Glyco_transf_56: 4-al 95.9 0.079 1.7E-06 48.2 10.0 109 107-222 185-305 (360)
138 TIGR03713 acc_sec_asp1 accesso 95.8 0.064 1.4E-06 51.8 9.6 89 117-209 329-455 (519)
139 PLN03064 alpha,alpha-trehalose 95.2 0.24 5.2E-06 51.0 11.8 105 96-206 355-484 (934)
140 TIGR00725 conserved hypothetic 94.9 1.2 2.5E-05 36.2 12.9 69 180-260 85-158 (159)
141 TIGR00730 conserved hypothetic 94.8 0.46 9.9E-06 39.4 10.4 55 178-232 88-155 (178)
142 COG1887 TagB Putative glycosyl 94.7 0.68 1.5E-05 43.1 12.6 162 41-219 148-318 (388)
143 cd04299 GT1_Glycogen_Phosphory 94.2 0.41 8.9E-06 48.4 10.6 109 103-214 474-601 (778)
144 PLN02210 UDP-glucosyl transfer 93.7 0.51 1.1E-05 44.9 9.7 113 104-227 266-383 (456)
145 KOG4626 O-linked N-acetylgluco 92.6 0.63 1.4E-05 45.6 8.4 133 97-239 749-889 (966)
146 PF00201 UDPGT: UDP-glucoronos 92.6 1.6 3.5E-05 41.6 11.5 100 95-211 264-367 (500)
147 PF10087 DUF2325: Uncharacteri 92.1 1 2.2E-05 33.2 7.5 33 180-212 42-82 (97)
148 PLN02448 UDP-glycosyltransfera 92.1 0.71 1.5E-05 43.9 8.2 109 104-227 271-382 (459)
149 PLN03007 UDP-glucosyltransfera 92.0 0.59 1.3E-05 44.7 7.7 98 104-211 282-389 (482)
150 PLN02167 UDP-glycosyltransfera 92.0 0.57 1.2E-05 44.8 7.5 104 97-211 270-384 (475)
151 TIGR00511 ribulose_e2b2 ribose 91.7 4.4 9.4E-05 36.4 12.5 100 106-218 115-230 (301)
152 PLN02863 UDP-glucoronosyl/UDP- 91.5 0.86 1.9E-05 43.7 8.1 101 101-211 277-387 (477)
153 PF01008 IF-2B: Initiation fac 90.9 2.6 5.6E-05 37.2 10.1 99 106-217 107-222 (282)
154 PRK08535 translation initiatio 90.6 5.7 0.00012 35.8 12.1 102 103-218 118-235 (310)
155 KOG1467 Translation initiation 90.5 5.7 0.00012 37.8 12.0 102 106-221 359-477 (556)
156 PRK10117 trehalose-6-phosphate 90.0 2 4.4E-05 41.1 9.0 120 96-221 247-395 (474)
157 PF05693 Glycogen_syn: Glycoge 89.9 0.64 1.4E-05 45.4 5.6 45 178-223 461-510 (633)
158 PRK08335 translation initiatio 89.3 11 0.00023 33.5 12.5 99 107-218 110-224 (275)
159 PLN02554 UDP-glycosyltransfera 89.1 1.6 3.5E-05 41.8 7.7 32 180-211 352-386 (481)
160 COG5017 Uncharacterized conser 88.7 0.86 1.9E-05 36.1 4.5 57 177-233 56-120 (161)
161 PLN02152 indole-3-acetate beta 87.8 4.1 8.8E-05 38.8 9.5 123 96-227 250-386 (455)
162 COG1184 GCD2 Translation initi 87.0 16 0.00034 32.9 12.1 53 159-214 163-230 (301)
163 PLN00414 glycosyltransferase f 86.8 4.7 0.0001 38.3 9.3 101 101-211 246-356 (446)
164 PLN00164 glucosyltransferase; 86.5 3.4 7.4E-05 39.6 8.3 32 180-211 349-383 (480)
165 PLN03004 UDP-glycosyltransfera 86.4 3.2 7E-05 39.5 7.9 98 104-211 267-378 (451)
166 PF04413 Glycos_transf_N: 3-De 85.6 12 0.00026 31.0 10.2 101 108-215 22-129 (186)
167 PLN02207 UDP-glycosyltransfera 85.4 3.5 7.5E-05 39.5 7.6 107 97-211 265-376 (468)
168 PLN02173 UDP-glucosyl transfer 85.3 3.1 6.8E-05 39.5 7.3 112 104-228 261-377 (449)
169 PLN02534 UDP-glycosyltransfera 85.3 6 0.00013 38.1 9.3 119 97-226 273-402 (491)
170 PF10093 DUF2331: Uncharacteri 85.2 11 0.00025 34.8 10.6 111 94-215 168-293 (374)
171 PLN02410 UDP-glucoronosyl/UDP- 85.2 4.6 0.0001 38.4 8.4 100 104-211 261-368 (451)
172 PF06925 MGDG_synth: Monogalac 85.0 0.77 1.7E-05 37.3 2.7 47 13-70 116-169 (169)
173 PLN02562 UDP-glycosyltransfera 84.6 4.8 0.0001 38.2 8.2 95 106-211 272-372 (448)
174 COG1519 KdtA 3-deoxy-D-manno-o 84.3 17 0.00037 34.2 11.3 113 93-212 30-153 (419)
175 TIGR00524 eIF-2B_rel eIF-2B al 84.0 19 0.00041 32.4 11.3 55 161-218 173-244 (303)
176 COG2327 WcaK Polysaccharide py 83.7 38 0.00082 31.6 15.5 157 37-212 148-311 (385)
177 cd05565 PTS_IIB_lactose PTS_II 83.6 7.2 0.00016 29.0 7.2 56 156-212 18-79 (99)
178 PLN02555 limonoid glucosyltran 82.7 6.8 0.00015 37.6 8.4 99 105-211 275-381 (480)
179 PF10686 DUF2493: Protein of u 80.5 13 0.00029 25.8 7.2 61 106-171 2-62 (71)
180 cd01080 NAD_bind_m-THF_DH_Cycl 80.0 8.5 0.00018 31.5 7.0 71 140-212 43-114 (168)
181 PLN02764 glycosyltransferase f 79.9 9.7 0.00021 36.3 8.3 101 101-211 251-361 (453)
182 PF00982 Glyco_transf_20: Glyc 79.3 10 0.00023 36.3 8.4 108 113-221 280-415 (474)
183 KOG2941 Beta-1,4-mannosyltrans 79.0 23 0.0005 32.7 9.9 110 105-219 252-378 (444)
184 TIGR03837 efp_adjacent_2 conse 78.9 28 0.00061 32.2 10.6 108 96-214 169-290 (371)
185 KOG1387 Glycosyltransferase [C 78.9 25 0.00055 32.4 10.1 118 95-216 256-391 (465)
186 PRK11891 aspartate carbamoyltr 77.6 37 0.00081 32.1 11.3 130 36-195 177-317 (429)
187 PF04413 Glycos_transf_N: 3-De 77.2 2 4.3E-05 35.8 2.5 60 7-69 113-180 (186)
188 PF13579 Glyco_trans_4_4: Glyc 76.2 1 2.2E-05 34.7 0.5 65 3-68 86-159 (160)
189 PLN02670 transferase, transfer 73.9 18 0.00038 34.7 8.3 103 99-211 270-383 (472)
190 PRK06372 translation initiatio 72.8 50 0.0011 29.0 10.2 54 161-217 129-197 (253)
191 TIGR00853 pts-lac PTS system, 72.3 24 0.00053 25.8 7.1 34 179-212 43-82 (95)
192 PLN03015 UDP-glucosyl transfer 72.0 20 0.00043 34.4 8.1 103 99-211 259-379 (470)
193 PRK10017 colanic acid biosynth 71.2 32 0.00069 32.5 9.3 41 179-219 110-163 (426)
194 TIGR01012 Sa_S2_E_A ribosomal 71.2 43 0.00094 28.2 9.1 88 125-214 46-140 (196)
195 PRK08192 aspartate carbamoyltr 70.6 74 0.0016 29.1 11.2 78 106-195 158-235 (338)
196 PLN02208 glycosyltransferase f 69.6 26 0.00056 33.2 8.4 107 96-211 240-355 (442)
197 cd05564 PTS_IIB_chitobiose_lic 69.1 22 0.00048 26.0 6.2 54 158-212 19-78 (96)
198 COG3563 KpsC Capsule polysacch 69.0 20 0.00043 34.4 7.1 50 168-220 209-258 (671)
199 PLN02992 coniferyl-alcohol glu 68.4 21 0.00046 34.3 7.5 32 180-211 348-382 (481)
200 PF03641 Lysine_decarbox: Poss 68.1 13 0.00028 29.0 5.1 55 178-232 45-113 (133)
201 TIGR02371 ala_DH_arch alanine 67.2 39 0.00085 30.5 8.7 77 104-195 125-201 (325)
202 PTZ00254 40S ribosomal protein 66.1 46 0.001 29.1 8.4 89 125-214 55-150 (249)
203 KOG1465 Translation initiation 66.0 75 0.0016 28.7 9.8 46 164-212 211-271 (353)
204 cd05212 NAD_bind_m-THF_DH_Cycl 65.8 35 0.00076 27.0 7.2 18 97-114 18-35 (140)
205 TIGR00512 salvage_mtnA S-methy 65.4 61 0.0013 29.6 9.5 54 162-218 202-272 (331)
206 PF01531 Glyco_transf_11: Glyc 64.2 76 0.0017 28.2 9.9 87 126-217 191-279 (298)
207 PF02882 THF_DHG_CYH_C: Tetrah 63.6 37 0.00081 27.5 7.1 19 178-196 71-89 (160)
208 PRK06823 ornithine cyclodeamin 63.1 41 0.00089 30.4 8.0 77 104-195 125-201 (315)
209 PRK05447 1-deoxy-D-xylulose 5- 63.0 1.1E+02 0.0025 28.5 10.9 37 178-214 81-124 (385)
210 TIGR00670 asp_carb_tr aspartat 62.6 47 0.001 29.9 8.2 83 98-194 142-224 (301)
211 PRK04020 rps2P 30S ribosomal p 62.2 86 0.0019 26.6 9.2 88 125-214 52-146 (204)
212 PF01408 GFO_IDH_MocA: Oxidore 60.9 65 0.0014 23.7 10.3 66 138-214 22-94 (120)
213 COG0373 HemA Glutamyl-tRNA red 60.8 1.3E+02 0.0028 28.4 10.9 71 132-212 194-272 (414)
214 PF05014 Nuc_deoxyrib_tr: Nucl 60.0 16 0.00034 27.4 4.1 33 181-213 56-97 (113)
215 PF11071 DUF2872: Protein of u 59.5 15 0.00033 28.8 3.8 45 181-225 67-123 (141)
216 PRK13660 hypothetical protein; 59.4 35 0.00075 28.4 6.2 38 107-149 42-79 (182)
217 cd01078 NAD_bind_H4MPT_DH NADP 58.6 1E+02 0.0022 25.2 10.9 18 178-195 89-106 (194)
218 PF09949 DUF2183: Uncharacteri 58.0 70 0.0015 23.8 7.2 39 131-169 54-92 (100)
219 PLN02205 alpha,alpha-trehalose 57.0 36 0.00078 35.2 7.2 95 111-206 341-460 (854)
220 PF02302 PTS_IIB: PTS system, 56.4 46 0.00099 23.4 5.9 58 156-214 18-76 (90)
221 PF03435 Saccharop_dh: Sacchar 56.3 54 0.0012 30.1 7.7 32 178-209 59-95 (386)
222 PF02423 OCD_Mu_crystall: Orni 56.1 73 0.0016 28.6 8.4 80 104-198 125-204 (313)
223 PRK07589 ornithine cyclodeamin 56.0 99 0.0022 28.4 9.3 78 104-196 126-203 (346)
224 COG4394 Uncharacterized protei 55.9 79 0.0017 28.5 8.1 112 94-216 164-288 (370)
225 COG0078 ArgF Ornithine carbamo 55.6 1.4E+02 0.003 27.0 9.8 83 96-194 143-229 (310)
226 COG0380 OtsA Trehalose-6-phosp 54.5 74 0.0016 30.7 8.4 101 107-210 282-409 (486)
227 TIGR03646 YtoQ_fam YtoQ family 53.4 22 0.00048 28.0 3.8 43 181-223 70-124 (144)
228 PF13524 Glyco_trans_1_2: Glyc 51.8 11 0.00025 26.6 2.0 24 197-221 14-37 (92)
229 KOG0822 Protein kinase inhibit 51.0 21 0.00045 34.7 4.0 73 108-192 369-445 (649)
230 PRK05749 3-deoxy-D-manno-octul 50.8 2E+02 0.0044 26.4 12.9 101 105-212 48-154 (425)
231 PRK06199 ornithine cyclodeamin 50.7 82 0.0018 29.3 7.9 78 104-195 152-232 (379)
232 PLN02342 ornithine carbamoyltr 50.1 2.1E+02 0.0045 26.3 10.8 81 98-194 186-267 (348)
233 PF01975 SurE: Survival protei 49.9 19 0.00041 30.2 3.3 22 191-212 109-132 (196)
234 PRK05720 mtnA methylthioribose 48.4 1.8E+02 0.004 26.6 9.7 54 162-218 202-272 (344)
235 PF02441 Flavoprotein: Flavopr 48.3 1.2E+02 0.0026 23.1 8.1 98 108-217 2-122 (129)
236 PRK00026 trmD tRNA (guanine-N( 48.2 1.7E+02 0.0037 25.5 8.8 51 196-247 145-196 (244)
237 PRK13931 stationary phase surv 48.0 16 0.00036 32.1 2.7 21 192-212 106-128 (261)
238 TIGR00087 surE 5'/3'-nucleotid 47.4 20 0.00044 31.2 3.2 22 191-212 104-127 (244)
239 PRK14191 bifunctional 5,10-met 47.4 93 0.002 27.8 7.4 54 141-196 157-210 (285)
240 TIGR01470 cysG_Nterm siroheme 47.2 1.6E+02 0.0036 24.6 8.7 86 108-212 10-101 (205)
241 TIGR02329 propionate_PrpR prop 46.6 42 0.00091 32.6 5.5 63 186-250 54-122 (526)
242 PF03808 Glyco_tran_WecB: Glyc 46.5 1.3E+02 0.0027 24.4 7.7 56 108-171 49-106 (172)
243 PRK13934 stationary phase surv 46.5 18 0.0004 31.9 2.8 22 192-213 104-127 (266)
244 PF01488 Shikimate_DH: Shikima 45.9 1.4E+02 0.0029 23.1 7.5 50 141-196 35-85 (135)
245 PRK06371 translation initiatio 45.7 2.4E+02 0.0052 25.8 10.3 54 161-217 191-261 (329)
246 KOG1713 NADH-ubiquinone oxidor 45.5 10 0.00022 30.9 0.9 65 4-74 80-148 (191)
247 PRK13932 stationary phase surv 45.5 22 0.00047 31.3 3.1 22 192-213 110-133 (257)
248 PRK00346 surE 5'(3')-nucleotid 45.4 22 0.00048 31.1 3.1 23 191-213 100-124 (250)
249 COG3414 SgaB Phosphotransferas 45.4 26 0.00057 25.7 3.1 52 142-194 2-57 (93)
250 PRK06407 ornithine cyclodeamin 44.9 1.4E+02 0.003 26.8 8.2 78 104-196 114-192 (301)
251 PRK06036 translation initiatio 44.7 2.2E+02 0.0048 26.1 9.6 54 162-218 203-272 (339)
252 PLN02527 aspartate carbamoyltr 44.7 1.6E+02 0.0035 26.5 8.6 85 98-195 143-227 (306)
253 TIGR00243 Dxr 1-deoxy-D-xylulo 44.5 2.7E+02 0.0059 26.1 10.8 36 179-214 84-126 (389)
254 PLN02819 lysine-ketoglutarate 43.5 2.4E+02 0.0053 30.0 10.7 34 178-211 640-678 (1042)
255 PRK08334 translation initiatio 43.5 2.3E+02 0.0049 26.2 9.4 54 162-218 215-285 (356)
256 KOG1192 UDP-glucuronosyl and U 42.5 1.5E+02 0.0033 27.8 8.7 99 107-210 277-379 (496)
257 PRK09590 celB cellobiose phosp 42.1 1.4E+02 0.0031 22.2 7.3 27 186-212 50-82 (104)
258 PRK13933 stationary phase surv 41.6 23 0.0005 31.0 2.7 22 192-213 106-129 (253)
259 PRK12743 oxidoreductase; Provi 41.4 2.2E+02 0.0047 24.0 9.7 78 108-195 3-89 (256)
260 PF03102 NeuB: NeuB family; I 41.3 1.7E+02 0.0038 25.3 8.0 38 105-149 112-150 (241)
261 PRK08618 ornithine cyclodeamin 40.9 1.9E+02 0.0041 26.0 8.6 93 104-211 124-220 (325)
262 PRK15424 propionate catabolism 40.2 56 0.0012 31.9 5.3 63 186-250 64-132 (538)
263 PRK14175 bifunctional 5,10-met 40.0 1.3E+02 0.0029 26.8 7.3 55 141-197 158-212 (286)
264 TIGR00088 trmD tRNA (guanine-N 39.7 2E+02 0.0043 24.9 7.9 53 196-248 142-195 (233)
265 PRK06046 alanine dehydrogenase 38.7 2.6E+02 0.0056 25.2 9.1 77 104-196 126-203 (326)
266 COG3613 Nucleoside 2-deoxyribo 38.5 38 0.00082 27.9 3.2 31 181-211 63-104 (172)
267 PRK13940 glutamyl-tRNA reducta 38.4 2.7E+02 0.0058 26.2 9.4 34 178-212 234-271 (414)
268 PRK05772 translation initiatio 37.7 3.4E+02 0.0073 25.2 9.9 54 162-218 223-293 (363)
269 COG1440 CelA Phosphotransferas 37.6 1.8E+02 0.0038 21.9 7.7 54 158-212 21-80 (102)
270 TIGR01182 eda Entner-Doudoroff 37.6 87 0.0019 26.5 5.5 83 127-215 45-131 (204)
271 PRK05562 precorrin-2 dehydroge 37.4 1.5E+02 0.0033 25.4 7.0 88 106-212 24-117 (223)
272 PRK14189 bifunctional 5,10-met 37.0 1.3E+02 0.0029 26.8 6.8 55 141-197 158-212 (285)
273 PF00185 OTCace: Aspartate/orn 36.8 1.7E+02 0.0037 23.3 6.9 17 178-194 65-81 (158)
274 PRK13302 putative L-aspartate 36.8 2.9E+02 0.0063 24.2 9.7 86 108-211 7-97 (271)
275 PRK06141 ornithine cyclodeamin 36.6 3E+02 0.0064 24.6 9.1 17 179-195 182-198 (314)
276 COG1611 Predicted Rossmann fol 35.9 2.7E+02 0.0058 23.5 11.5 30 180-209 104-139 (205)
277 PRK13935 stationary phase surv 35.7 33 0.00072 30.1 2.7 22 192-213 105-128 (253)
278 PRK14183 bifunctional 5,10-met 35.7 1.7E+02 0.0036 26.2 7.1 54 141-196 157-210 (281)
279 PRK05282 (alpha)-aspartyl dipe 35.3 2.1E+02 0.0046 24.6 7.6 96 111-210 4-118 (233)
280 PF02401 LYTB: LytB protein; 34.9 94 0.002 27.7 5.5 53 145-199 214-267 (281)
281 PF13941 MutL: MutL protein 34.9 1.6E+02 0.0035 28.2 7.3 64 95-166 115-178 (457)
282 PF06506 PrpR_N: Propionate ca 34.9 23 0.00051 28.8 1.6 61 185-247 33-99 (176)
283 cd05568 PTS_IIB_bgl_like PTS_I 34.3 71 0.0015 22.0 3.9 25 185-214 45-69 (85)
284 PRK10310 PTS system galactitol 34.1 1E+02 0.0022 22.4 4.7 64 143-210 4-71 (94)
285 PF06908 DUF1273: Protein of u 34.0 45 0.00098 27.5 3.1 38 107-149 42-79 (177)
286 PRK01713 ornithine carbamoyltr 34.0 3.7E+02 0.0079 24.5 11.2 83 98-194 147-233 (334)
287 PLN00203 glutamyl-tRNA reducta 33.9 4.5E+02 0.0098 25.6 11.1 35 178-212 321-367 (519)
288 PRK07340 ornithine cyclodeamin 33.3 3E+02 0.0064 24.6 8.5 17 179-195 181-197 (304)
289 PRK02255 putrescine carbamoylt 33.3 3.2E+02 0.0069 25.0 8.8 82 98-194 143-230 (338)
290 TIGR01319 glmL_fam conserved h 33.3 1.3E+02 0.0029 28.8 6.4 114 94-215 110-258 (463)
291 TIGR02992 ectoine_eutC ectoine 33.2 3.3E+02 0.0072 24.5 8.9 77 105-196 127-204 (326)
292 PRK08063 enoyl-(acyl carrier p 33.0 2.8E+02 0.0062 22.9 9.5 78 108-195 5-91 (250)
293 COG1165 MenD 2-succinyl-6-hydr 32.9 37 0.0008 33.1 2.7 24 189-212 74-104 (566)
294 PRK06114 short chain dehydroge 32.7 3E+02 0.0065 23.1 9.9 32 107-148 8-39 (254)
295 PRK09134 short chain dehydroge 32.4 3E+02 0.0066 23.1 9.9 12 107-118 9-20 (258)
296 PRK12446 undecaprenyldiphospho 32.4 3.9E+02 0.0083 24.3 11.4 93 109-211 3-120 (352)
297 PTZ00357 methyltransferase; Pr 32.2 1.4E+02 0.0031 30.4 6.5 38 108-153 702-739 (1072)
298 KOG1387 Glycosyltransferase [C 31.7 2.8E+02 0.0061 25.9 7.9 98 127-228 62-173 (465)
299 PRK14986 glycogen phosphorylas 31.5 2.3E+02 0.0051 29.2 8.2 117 100-217 534-679 (815)
300 PF00056 Ldh_1_N: lactate/mala 31.3 2E+02 0.0044 22.4 6.4 43 108-150 71-120 (141)
301 PRK06718 precorrin-2 dehydroge 31.3 2.8E+02 0.0061 23.1 7.6 87 107-212 10-101 (202)
302 COG0379 NadA Quinolinate synth 31.1 2.8E+02 0.0061 25.2 7.8 101 106-224 69-177 (324)
303 PRK06947 glucose-1-dehydrogena 30.9 3.1E+02 0.0067 22.7 9.4 11 108-118 3-13 (248)
304 PRK14180 bifunctional 5,10-met 30.2 2.2E+02 0.0048 25.4 7.0 54 141-196 158-211 (282)
305 PRK12481 2-deoxy-D-gluconate 3 29.9 3.4E+02 0.0073 22.8 9.0 31 107-147 8-38 (251)
306 PRK06139 short chain dehydroge 29.8 3.8E+02 0.0083 24.0 8.8 12 107-118 7-18 (330)
307 PRK14176 bifunctional 5,10-met 29.6 2.2E+02 0.0048 25.5 6.9 54 141-196 164-217 (287)
308 KOG1466 Translation initiation 29.3 4.1E+02 0.0089 23.7 10.3 98 106-215 130-242 (313)
309 PLN02696 1-deoxy-D-xylulose-5- 29.2 5.2E+02 0.011 24.8 10.9 37 178-214 139-182 (454)
310 TIGR00658 orni_carb_tr ornithi 29.1 4.2E+02 0.0091 23.7 12.7 150 9-194 61-224 (304)
311 KOG1495 Lactate dehydrogenase 29.1 2.6E+02 0.0057 25.1 7.1 64 101-165 83-153 (332)
312 cd05213 NAD_bind_Glutamyl_tRNA 29.0 4.2E+02 0.009 23.6 9.1 38 178-215 230-274 (311)
313 TIGR00216 ispH_lytB (E)-4-hydr 29.0 1.3E+02 0.0028 26.9 5.3 41 157-198 225-265 (280)
314 PF00106 adh_short: short chai 28.8 2.7E+02 0.0058 21.4 7.7 11 108-118 1-11 (167)
315 cd05566 PTS_IIB_galactitol PTS 28.3 1.7E+02 0.0036 20.5 5.0 26 183-212 45-70 (89)
316 cd01425 RPS2 Ribosomal protein 27.9 3.5E+02 0.0075 22.4 9.7 74 141-215 56-160 (193)
317 cd05567 PTS_IIB_mannitol PTS_I 27.7 2.2E+02 0.0048 20.0 6.1 29 185-213 44-73 (87)
318 PRK14187 bifunctional 5,10-met 27.6 2.8E+02 0.006 24.9 7.2 54 141-196 160-213 (294)
319 PF01081 Aldolase: KDPG and KH 27.4 3.5E+02 0.0076 22.7 7.4 85 128-217 46-133 (196)
320 PF02056 Glyco_hydro_4: Family 27.4 2E+02 0.0043 23.9 5.9 32 160-194 50-81 (183)
321 PRK00779 ornithine carbamoyltr 27.3 4.5E+02 0.0099 23.5 10.5 125 36-194 93-225 (304)
322 PF05185 PRMT5: PRMT5 arginine 27.2 1.5E+02 0.0033 28.2 5.8 76 107-192 187-264 (448)
323 TIGR03316 ygeW probable carbam 27.2 3.9E+02 0.0086 24.6 8.3 49 141-194 201-253 (357)
324 COG0058 GlgP Glucan phosphoryl 27.0 6.2E+02 0.013 26.0 10.1 109 105-215 485-612 (750)
325 PF02445 NadA: Quinolinate syn 27.0 4.7E+02 0.01 23.5 9.9 101 105-222 45-152 (296)
326 COG0474 MgtA Cation transport 26.8 5.7E+02 0.012 26.8 10.3 104 94-212 577-681 (917)
327 PRK14599 trmD tRNA (guanine-N( 26.7 3.9E+02 0.0083 23.0 7.5 52 196-248 143-196 (222)
328 PRK07200 aspartate/ornithine c 26.6 5E+02 0.011 24.3 9.0 49 141-194 218-270 (395)
329 PRK08291 ectoine utilization p 26.5 4.5E+02 0.0098 23.6 8.6 19 178-196 189-207 (330)
330 PRK08416 7-alpha-hydroxysteroi 26.5 3.9E+02 0.0085 22.5 9.4 33 107-149 8-40 (260)
331 PF13439 Glyco_transf_4: Glyco 26.4 48 0.001 25.5 2.0 35 38-72 136-173 (177)
332 PRK14982 acyl-ACP reductase; P 26.3 5E+02 0.011 23.8 8.8 35 179-213 208-245 (340)
333 PRK12360 4-hydroxy-3-methylbut 26.2 1.4E+02 0.0031 26.6 5.1 39 158-198 227-266 (281)
334 KOG1611 Predicted short chain- 26.2 2.1E+02 0.0045 25.0 5.8 34 110-152 6-39 (249)
335 PRK14190 bifunctional 5,10-met 26.1 3.1E+02 0.0068 24.5 7.2 54 141-196 158-211 (284)
336 PRK12935 acetoacetyl-CoA reduc 26.0 3.8E+02 0.0082 22.1 9.6 12 107-118 6-17 (247)
337 PRK06172 short chain dehydroge 25.9 3.9E+02 0.0084 22.2 9.3 12 107-118 7-18 (253)
338 PRK07027 cobalamin biosynthesi 25.7 52 0.0011 25.5 2.0 46 156-204 50-100 (126)
339 PRK10792 bifunctional 5,10-met 25.4 3.1E+02 0.0067 24.5 7.1 20 177-196 193-212 (285)
340 cd04300 GT1_Glycogen_Phosphory 25.4 2.8E+02 0.0061 28.6 7.5 115 100-217 521-666 (797)
341 COG0336 TrmD tRNA-(guanine-N1) 25.4 1.6E+02 0.0035 25.5 5.0 63 186-248 131-197 (240)
342 COG0496 SurE Predicted acid ph 25.2 63 0.0014 28.3 2.6 20 193-212 103-124 (252)
343 TIGR01761 thiaz-red thiazoliny 25.2 5.3E+02 0.012 23.6 8.9 74 128-215 17-100 (343)
344 PRK14173 bifunctional 5,10-met 25.2 3.2E+02 0.0069 24.4 7.1 19 178-196 190-208 (287)
345 PRK06194 hypothetical protein; 25.2 4.3E+02 0.0093 22.5 9.7 78 108-196 7-93 (287)
346 PRK14169 bifunctional 5,10-met 25.1 3.4E+02 0.0073 24.2 7.3 20 177-196 190-209 (282)
347 PF00391 PEP-utilizers: PEP-ut 24.8 2.1E+02 0.0045 19.9 4.9 28 183-210 27-58 (80)
348 PRK14166 bifunctional 5,10-met 24.8 3.3E+02 0.0072 24.3 7.2 54 141-196 157-210 (282)
349 PRK08936 glucose-1-dehydrogena 24.8 4.2E+02 0.0091 22.2 9.5 12 107-118 7-18 (261)
350 PRK14186 bifunctional 5,10-met 24.8 3.3E+02 0.0071 24.5 7.1 19 178-196 193-211 (297)
351 PRK14170 bifunctional 5,10-met 24.7 3.4E+02 0.0074 24.2 7.2 19 178-196 192-210 (284)
352 PRK14182 bifunctional 5,10-met 24.6 2.1E+02 0.0046 25.5 5.9 54 141-196 157-210 (282)
353 PRK07792 fabG 3-ketoacyl-(acyl 24.6 4.8E+02 0.01 22.8 9.7 13 106-118 11-23 (306)
354 PRK02102 ornithine carbamoyltr 24.5 5.4E+02 0.012 23.4 10.7 82 98-194 147-232 (331)
355 PF06189 5-nucleotidase: 5'-nu 24.2 5E+02 0.011 22.9 8.1 88 125-215 166-262 (264)
356 PRK14172 bifunctional 5,10-met 24.1 3.5E+02 0.0076 24.1 7.1 54 141-196 158-211 (278)
357 cd00133 PTS_IIB PTS_IIB: subun 24.0 2.2E+02 0.0048 18.8 4.9 27 183-212 43-69 (84)
358 PRK13304 L-aspartate dehydroge 24.0 4.8E+02 0.01 22.6 8.7 63 141-213 26-93 (265)
359 PRK08339 short chain dehydroge 23.9 4.5E+02 0.0098 22.3 9.6 31 107-147 8-38 (263)
360 KOG1602 Cis-prenyltransferase 23.9 3.9E+02 0.0085 23.6 7.1 12 186-197 209-220 (271)
361 PLN03209 translocon at the inn 23.8 5.1E+02 0.011 25.7 8.8 18 178-195 151-168 (576)
362 PF10649 DUF2478: Protein of u 23.8 2E+02 0.0044 23.3 5.2 23 199-221 117-139 (159)
363 PRK07102 short chain dehydroge 23.7 4.2E+02 0.0091 21.9 9.0 10 109-118 3-12 (243)
364 TIGR03855 NAD_NadX aspartate d 23.6 4.5E+02 0.0097 22.5 7.6 62 142-213 2-69 (229)
365 PRK01438 murD UDP-N-acetylmura 23.5 6.3E+02 0.014 23.8 9.6 78 102-196 11-88 (480)
366 PRK14177 bifunctional 5,10-met 23.3 3.7E+02 0.0081 24.0 7.2 54 141-196 159-212 (284)
367 PRK12937 short chain dehydroge 23.3 4.2E+02 0.0092 21.7 9.4 12 107-118 5-16 (245)
368 PRK05855 short chain dehydroge 23.2 5.8E+02 0.013 24.1 9.2 79 106-195 314-401 (582)
369 PRK11564 stationary phase indu 23.1 1.7E+02 0.0037 27.3 5.3 70 140-213 337-409 (426)
370 COG2247 LytB Putative cell wal 22.7 5.6E+02 0.012 23.4 8.1 86 134-221 70-170 (337)
371 PRK13982 bifunctional SbtC-lik 22.6 7E+02 0.015 24.0 10.3 37 181-217 141-192 (475)
372 PLN02825 amino-acid N-acetyltr 22.3 2.2E+02 0.0048 27.7 6.0 61 106-174 17-77 (515)
373 PRK12745 3-ketoacyl-(acyl-carr 22.1 4.6E+02 0.0099 21.7 9.6 31 108-148 3-33 (256)
374 PF08840 BAAT_C: BAAT / Acyl-C 22.1 1.4E+02 0.0031 25.0 4.2 33 109-151 23-55 (213)
375 PRK04284 ornithine carbamoyltr 22.1 6E+02 0.013 23.1 11.1 75 106-194 154-232 (332)
376 COG1204 Superfamily II helicas 22.0 3.3E+02 0.0071 28.0 7.4 106 102-215 43-156 (766)
377 COG2217 ZntA Cation transport 22.0 3.2E+02 0.007 27.8 7.2 73 127-203 541-636 (713)
378 cd02067 B12-binding B12 bindin 22.0 3.3E+02 0.0072 20.1 7.7 16 54-69 21-36 (119)
379 PRK01045 ispH 4-hydroxy-3-meth 21.9 2.1E+02 0.0045 25.7 5.3 12 58-69 111-122 (298)
380 COG0190 FolD 5,10-methylene-te 21.8 3.8E+02 0.0083 23.9 6.9 55 140-196 155-209 (283)
381 PRK14178 bifunctional 5,10-met 21.7 4E+02 0.0086 23.7 7.0 53 141-195 152-204 (279)
382 COG0761 lytB 4-Hydroxy-3-methy 21.7 1.9E+02 0.004 26.0 4.9 52 146-198 218-269 (294)
383 cd03146 GAT1_Peptidase_E Type 21.6 4.8E+02 0.01 21.7 8.8 38 158-195 51-89 (212)
384 COG2266 GTP:adenosylcobinamide 21.6 4.7E+02 0.01 21.7 7.5 81 126-212 28-122 (177)
385 PRK14193 bifunctional 5,10-met 21.5 4.5E+02 0.0098 23.4 7.3 20 177-196 194-213 (284)
386 PLN02516 methylenetetrahydrofo 21.3 4.2E+02 0.0091 23.9 7.1 54 141-196 167-220 (299)
387 PRK04523 N-acetylornithine car 21.3 6.1E+02 0.013 23.1 8.4 49 141-194 199-252 (335)
388 PRK03515 ornithine carbamoyltr 21.2 6.3E+02 0.014 23.0 11.2 83 98-194 146-233 (336)
389 COG0039 Mdh Malate/lactate deh 21.2 1.9E+02 0.0041 26.2 4.9 35 116-150 86-120 (313)
390 PRK14181 bifunctional 5,10-met 20.9 4.6E+02 0.0099 23.5 7.3 20 177-196 191-210 (287)
391 cd06533 Glyco_transf_WecG_TagA 20.9 4.5E+02 0.0097 21.1 7.2 34 108-149 47-80 (171)
392 KOG2794 Delta-aminolevulinic a 20.8 5.9E+02 0.013 22.8 7.6 44 179-222 290-337 (340)
393 cd02968 SCO SCO (an acronym fo 20.7 3.7E+02 0.008 20.1 9.0 88 106-194 22-112 (142)
394 PRK12938 acetyacetyl-CoA reduc 20.6 4.9E+02 0.011 21.4 9.7 11 108-118 4-14 (246)
395 PRK05565 fabG 3-ketoacyl-(acyl 20.2 4.9E+02 0.011 21.3 9.5 79 108-196 6-93 (247)
No 1
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=100.00 E-value=3.6e-60 Score=431.96 Aligned_cols=235 Identities=35% Similarity=0.646 Sum_probs=205.5
Q ss_pred cchhhhcCCCCe-EEEEeCCccccccCCcchHHHHHhchhhheecCcchHHHHHHcCCCeEEEcCCCccchhhhcCCCCC
Q 024872 5 ARYSHERLNGPA-HFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGP 83 (261)
Q Consensus 5 ~~~~~~~~~ip~-~~~yv~p~~waw~~g~~r~~~l~~~~d~v~~~~p~e~~~~~~~g~~~~~vG~P~~d~~~~~~~~~~~ 83 (261)
|+++|++ |+|+ ++|||+||+|||++| |++++++++|+++|+||||.++|+++|++++|||||+.|.+..
T Consensus 99 ak~lk~~-~~~~~viyYI~PqvWAWr~~--R~~~i~~~~D~ll~ifPFE~~~y~~~g~~~~~VGHPl~d~~~~------- 168 (373)
T PF02684_consen 99 AKKLKKR-GIPIKVIYYISPQVWAWRPG--RAKKIKKYVDHLLVIFPFEPEFYKKHGVPVTYVGHPLLDEVKP------- 168 (373)
T ss_pred HHHHHHh-CCCceEEEEECCceeeeCcc--HHHHHHHHHhheeECCcccHHHHhccCCCeEEECCcchhhhcc-------
Confidence 5778888 8882 379999999999987 9999999999999999999999999999999999999997653
Q ss_pred CCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHh
Q 024872 84 EPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQ 163 (261)
Q Consensus 84 ~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~ 163 (261)
..++...++++ +++++++|+++||||.+|+++++|.|+++++++.+++|+++|++++.++. ..+.+++...
T Consensus 169 -------~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~-~~~~i~~~~~ 239 (373)
T PF02684_consen 169 -------EPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEV-HEELIEEILA 239 (373)
T ss_pred -------CCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHH-HHHHHHHHHH
Confidence 12356667777 99999999999999999999999999999999999999999999998743 3344555554
Q ss_pred cCCCCEEEecCCCcchHHHHHHHcceeEEechHHHHHHHHcCCCEEEEEcCChHHHHHHHhcccCCccchhhhhcCCCCc
Q 024872 164 KWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAHFLTEWFIRYKAKIPYISLPNILLDSPII 243 (261)
Q Consensus 164 ~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tlEa~~~G~P~Vv~~~~~~~~~~ia~~~~~~~~~~l~Nil~~~~i~ 243 (261)
....++.+... .++.+++|++||++++.|||+|||++++|+|||++|+++++|||++|+++|++|+|||||++|++++
T Consensus 240 ~~~~~~~~~~~--~~~~~~~m~~ad~al~~SGTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~ 317 (373)
T PF02684_consen 240 EYPPDVSIVII--EGESYDAMAAADAALAASGTATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVV 317 (373)
T ss_pred hhCCCCeEEEc--CCchHHHHHhCcchhhcCCHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcc
Confidence 44333332211 2378999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHh
Q 024872 244 PEALLQACTPDTLTHLL 260 (261)
Q Consensus 244 pE~lq~~~~~~~i~~~~ 260 (261)
|||||++||+++|+.++
T Consensus 318 PEliQ~~~~~~~i~~~~ 334 (373)
T PF02684_consen 318 PELIQEDATPENIAAEL 334 (373)
T ss_pred hhhhcccCCHHHHHHHH
Confidence 99999999999999876
No 2
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.5e-59 Score=416.63 Aligned_cols=233 Identities=36% Similarity=0.615 Sum_probs=206.0
Q ss_pred cchhhhcCC--CCeEEEEeCCccccccCCcchHHHHHhchhhheecCcchHHHHHHcCCCeEEEcCCCccchhhhcCCCC
Q 024872 5 ARYSHERLN--GPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELNLGKG 82 (261)
Q Consensus 5 ~~~~~~~~~--ip~~~~yv~p~~waw~~g~~r~~~l~~~~d~v~~~~p~e~~~~~~~g~~~~~vG~P~~d~~~~~~~~~~ 82 (261)
++++|++ | ||+ +|||+||||||+++ |+.++.+++|++++++|||.++|++.|.+++|||||+.|... +
T Consensus 102 ak~lrk~-~p~i~i-ihYV~PsVWAWr~~--Ra~~i~~~~D~lLailPFE~~~y~k~g~~~~yVGHpl~d~i~-~----- 171 (381)
T COG0763 102 AKKLRKA-GPKIKI-IHYVSPSVWAWRPK--RAVKIAKYVDHLLAILPFEPAFYDKFGLPCTYVGHPLADEIP-L----- 171 (381)
T ss_pred HHHHHHh-CCCCCe-EEEECcceeeechh--hHHHHHHHhhHeeeecCCCHHHHHhcCCCeEEeCChhhhhcc-c-----
Confidence 4667777 6 999 69999999999987 999999999999999999999999999999999999998763 1
Q ss_pred CCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHH
Q 024872 83 PEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLI 162 (261)
Q Consensus 83 ~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~ 162 (261)
..+++.+|+++|++.++++|+++||||++|+++++|.+.+++.++.+++|+++|++++.+. .++....+..
T Consensus 172 --------~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~-~~~~~~~~~~ 242 (381)
T COG0763 172 --------LPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNA-KYRRIIEEAL 242 (381)
T ss_pred --------cccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcH-HHHHHHHHHh
Confidence 2457889999999999999999999999999999999999999999999999999999863 3333333333
Q ss_pred hcCC--CCEEEecCCCcchHHHHHHHcceeEEechHHHHHHHHcCCCEEEEEcCChHHHHHHHhcccCCccchhhhhcCC
Q 024872 163 QKWP--VPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAHFLTEWFIRYKAKIPYISLPNILLDS 240 (261)
Q Consensus 163 ~~~~--~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tlEa~~~G~P~Vv~~~~~~~~~~ia~~~~~~~~~~l~Nil~~~ 240 (261)
+... .+..+.+ ++.+++|.+||+++++|||+|||+|++|+|||+.|+++++|++++|+++|+||+|||||++|+
T Consensus 243 ~~~~~~~~~~~~~----~~~~~a~~~aD~al~aSGT~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~ 318 (381)
T COG0763 243 KWEVAGLSLILID----GEKRKAFAAADAALAASGTATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGR 318 (381)
T ss_pred hccccCceEEecC----chHHHHHHHhhHHHHhccHHHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCC
Confidence 2222 2333433 368999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCHHHHHHHh
Q 024872 241 PIIPEALLQACTPDTLTHLL 260 (261)
Q Consensus 241 ~i~pE~lq~~~~~~~i~~~~ 260 (261)
+++||++|++|+|++|++++
T Consensus 319 ~ivPEliq~~~~pe~la~~l 338 (381)
T COG0763 319 EIVPELIQEDCTPENLARAL 338 (381)
T ss_pred ccchHHHhhhcCHHHHHHHH
Confidence 99999999999999999876
No 3
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=100.00 E-value=7.5e-56 Score=418.72 Aligned_cols=231 Identities=28% Similarity=0.501 Sum_probs=201.0
Q ss_pred cchhhhcCCC--CeEEEEeCCccccccCCcchHHHHHhchhhheecCcchHHHHHHcCCCeEEEcCCCccchhhhcCCCC
Q 024872 5 ARYSHERLNG--PAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELNLGKG 82 (261)
Q Consensus 5 ~~~~~~~~~i--p~~~~yv~p~~waw~~g~~r~~~l~~~~d~v~~~~p~e~~~~~~~g~~~~~vG~P~~d~~~~~~~~~~ 82 (261)
||.+|++ || |+ +||++||+|||++| |++++++++|+++|+||||.++|+++|++++|||||+.|.+..
T Consensus 327 AK~lkk~-Gi~ipv-iyYVsPqVWAWR~~--Rikki~k~vD~ll~IfPFE~~~y~~~gv~v~yVGHPL~d~i~~------ 396 (608)
T PRK01021 327 IKKLRKR-GYKGKI-VHYVCPSIWAWRPK--RKTILEKYLDLLLLILPFEQNLFKDSPLRTVYLGHPLVETISS------ 396 (608)
T ss_pred HHHHHhc-CCCCCE-EEEECccceeeCcc--hHHHHHHHhhhheecCccCHHHHHhcCCCeEEECCcHHhhccc------
Confidence 5788888 85 98 69999999999987 9999999999999999999999999999999999999987541
Q ss_pred CCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHH--HHhhhCCCeEEEEEeCCCcchHHHHHH
Q 024872 83 PEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVE--LLKDSFPELITVIHVAPNRHVENYITG 160 (261)
Q Consensus 83 ~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~--~l~~~~~~~~~vi~~~~~~~~~~~l~~ 160 (261)
..++.++++++|+++++++|+++||||.+|+++++|.++++++ .+. ++++++++..+.. .++.+++
T Consensus 397 --------~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~---~~l~fvvp~a~~~-~~~~i~~ 464 (608)
T PRK01021 397 --------FSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLA---STHQLLVSSANPK-YDHLILE 464 (608)
T ss_pred --------CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhc---cCeEEEEecCchh-hHHHHHH
Confidence 1245678899999989999999999999999999999999998 554 3589998877533 3455666
Q ss_pred HHhcCC-CCEEEecCCCcchHHHHHHHcceeEEechHHHHHHHHcCCCEEEEEcCChHHHHHHHhccc--CCccchhhhh
Q 024872 161 LIQKWP-VPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAHFLTEWFIRYKAK--IPYISLPNIL 237 (261)
Q Consensus 161 ~~~~~~-~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tlEa~~~G~P~Vv~~~~~~~~~~ia~~~~~--~~~~~l~Nil 237 (261)
.+++++ .++.++.+. +-+++|++||+++++|||+|||++++|+|||++|+++++|||++|+++| +||+|||||+
T Consensus 465 ~~~~~~~~~~~ii~~~---~~~~~m~aaD~aLaaSGTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNII 541 (608)
T PRK01021 465 VLQQEGCLHSHIVPSQ---FRYELMRECDCALAKCGTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNII 541 (608)
T ss_pred HHhhcCCCCeEEecCc---chHHHHHhcCeeeecCCHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHh
Confidence 665554 245555431 3589999999999999999999999999999999999999999999999 5999999999
Q ss_pred cCCCCccccc--CCCCCHHHHHHHh
Q 024872 238 LDSPIIPEAL--LQACTPDTLTHLL 260 (261)
Q Consensus 238 ~~~~i~pE~l--q~~~~~~~i~~~~ 260 (261)
+|++++||+| |++|||++|++++
T Consensus 542 agr~VvPEllqgQ~~~tpe~La~~l 566 (608)
T PRK01021 542 LGSTIFPEFIGGKKDFQPEEVAAAL 566 (608)
T ss_pred cCCCcchhhcCCcccCCHHHHHHHH
Confidence 9999999999 7999999999864
No 4
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=100.00 E-value=1.6e-52 Score=379.60 Aligned_cols=216 Identities=28% Similarity=0.452 Sum_probs=184.6
Q ss_pred cchhhhcC-CCCeEEEEeCCccccccCCcchHHHHHhchhhheecCcchHHHHHHcCCCeEEEcCCCccchhhhcCCCCC
Q 024872 5 ARYSHERL-NGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGP 83 (261)
Q Consensus 5 ~~~~~~~~-~ip~~~~yv~p~~waw~~g~~r~~~l~~~~d~v~~~~p~e~~~~~~~g~~~~~vG~P~~d~~~~~~~~~~~ 83 (261)
||++|++. |||+ +||++||+|||++| |++++++++|+++|+||||.++| |++++|||||++|.+...
T Consensus 93 ak~~k~~~~~i~v-iyyi~PqvWAWr~~--R~~~i~k~~d~vl~ifPFE~~~y---g~~~~~VGhPl~d~~~~~------ 160 (347)
T PRK14089 93 AKKIKKAYPKKEI-IYYILPQVWAWKKG--RAKILEKYCDFLASILPFEVQFY---QSKATYVGHPLLDEIKEF------ 160 (347)
T ss_pred HHHHHhcCCCCCE-EEEECccceeeCcc--hHHHHHHHHhhhhccCCCCHHHh---CCCCEEECCcHHHhhhhh------
Confidence 67788875 6999 69999999999987 99999999999999999999999 789999999999865310
Q ss_pred CCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHh
Q 024872 84 EPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQ 163 (261)
Q Consensus 84 ~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~ 163 (261)
++. ++ ++++|+++||||++|+++++|.|+++++++.++. .++++++.++ . +.+++...
T Consensus 161 --------------~~~--~~-~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~--~~~~i~~a~~--~-~~i~~~~~ 218 (347)
T PRK14089 161 --------------KKD--LD-KEGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKE--KILVVPSFFK--G-KDLKEIYG 218 (347)
T ss_pred --------------hhh--cC-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcC--cEEEEeCCCc--H-HHHHHHHh
Confidence 111 23 3489999999999999999999999999998653 6777776543 2 44555554
Q ss_pred cCCCCEEEecCCCcchHHHHHHHcceeEEechHHHHHHHHcCCCEEEEEcCChHHHHHHHhcccCCccchhhhhcC----
Q 024872 164 KWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAHFLTEWFIRYKAKIPYISLPNILLD---- 239 (261)
Q Consensus 164 ~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tlEa~~~G~P~Vv~~~~~~~~~~ia~~~~~~~~~~l~Nil~~---- 239 (261)
++. .+.++ ++++++|++||++|++|||+|+|++++|+|||++|++++++|+++|+++|+||+|+||||+|
T Consensus 219 ~~~-~~~~~-----~~~~~~m~~aDlal~~SGT~TLE~al~g~P~Vv~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~ 292 (347)
T PRK14089 219 DIS-EFEIS-----YDTHKALLEAEFAFICSGTATLEAALIGTPFVLAYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGK 292 (347)
T ss_pred cCC-CcEEe-----ccHHHHHHhhhHHHhcCcHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcc
Confidence 432 33444 26789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCCHHHHHHHh
Q 024872 240 SPIIPEALLQACTPDTLTHLL 260 (261)
Q Consensus 240 ~~i~pE~lq~~~~~~~i~~~~ 260 (261)
++++|||+|+++|+++|++++
T Consensus 293 ~~vvPEllQ~~~t~~~la~~i 313 (347)
T PRK14089 293 EPLHPELLQEFVTVENLLKAY 313 (347)
T ss_pred cccCchhhcccCCHHHHHHHH
Confidence 999999999999999999876
No 5
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=100.00 E-value=5.2e-48 Score=356.63 Aligned_cols=233 Identities=31% Similarity=0.512 Sum_probs=197.6
Q ss_pred chhhhcCCCCeEEEEeCCccccccCCcchHHHHHhchhhheecCcchHHHHHHcCCCeEEEcCCCccchhhhcCCCCCCC
Q 024872 6 RYSHERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGPEP 85 (261)
Q Consensus 6 ~~~~~~~~ip~~~~yv~p~~waw~~g~~r~~~l~~~~d~v~~~~p~e~~~~~~~g~~~~~vG~P~~d~~~~~~~~~~~~~ 85 (261)
+.|+.. |||+ +||++|++|+|+.+ |.+.+++++|+++++||++.++|+++|.++.+||||++|.+..+
T Consensus 107 ~aa~~~-gip~-v~~i~P~~waw~~~--~~r~l~~~~d~v~~~~~~e~~~~~~~g~~~~~vGnPv~~~~~~~-------- 174 (385)
T TIGR00215 107 LKKKDP-GIKI-IYYISPQVWAWRKW--RAKKIEKATDFLLAILPFEKAFYQKKNVPCRFVGHPLLDAIPLY-------- 174 (385)
T ss_pred HHHhhC-CCCE-EEEeCCcHhhcCcc--hHHHHHHHHhHhhccCCCcHHHHHhcCCCEEEECCchhhhcccc--------
Confidence 445555 9999 59999999999965 87888999999999999999999988899999999999865311
Q ss_pred cccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcC
Q 024872 86 CELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKW 165 (261)
Q Consensus 86 ~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~ 165 (261)
..++.+.|+++|+++++++|+++||||+++++++++.++++++.+.+..|++++++++++... .+.+++..+++
T Consensus 175 -----~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~-~~~~~~~~~~~ 248 (385)
T TIGR00215 175 -----KPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKR-RLQFEQIKAEY 248 (385)
T ss_pred -----CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchh-HHHHHHHHHHh
Confidence 123566788999999999999999999999888899999999999888889998776654322 23344444433
Q ss_pred --CCCEEEecCCCcchHHHHHHHcceeEEechHHHHHHHHcCCCEEEEEcCChHHHHHHHhcccCCccchhhhhcCCCCc
Q 024872 166 --PVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAHFLTEWFIRYKAKIPYISLPNILLDSPII 243 (261)
Q Consensus 166 --~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tlEa~~~G~P~Vv~~~~~~~~~~ia~~~~~~~~~~l~Nil~~~~i~ 243 (261)
+..+.++. .++.++|++||++|++|||+|+|+|++|+|+|++|++++++|+++|+++|++|+++||+++|++++
T Consensus 249 ~~~~~v~~~~----~~~~~~l~aADl~V~~SGt~tlEa~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~ 324 (385)
T TIGR00215 249 GPDLQLHLID----GDARKAMFAADAALLASGTAALEAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLV 324 (385)
T ss_pred CCCCcEEEEC----chHHHHHHhCCEEeecCCHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccc
Confidence 22344443 378899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHh
Q 024872 244 PEALLQACTPDTLTHLL 260 (261)
Q Consensus 244 pE~lq~~~~~~~i~~~~ 260 (261)
||++|+++|+++|++++
T Consensus 325 pel~q~~~~~~~l~~~~ 341 (385)
T TIGR00215 325 PELLQEECTPHPLAIAL 341 (385)
T ss_pred hhhcCCCCCHHHHHHHH
Confidence 99999999999999876
No 6
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=100.00 E-value=3.4e-35 Score=269.39 Aligned_cols=232 Identities=35% Similarity=0.624 Sum_probs=197.4
Q ss_pred chhhhcCCCCeEEEEeCCccccccCCcchHHHHHhchhhheecCcchHHHHHHcCCCeEEEcCCCccchhhhcCCCCCCC
Q 024872 6 RYSHERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGPEP 85 (261)
Q Consensus 6 ~~~~~~~~ip~~~~yv~p~~waw~~g~~r~~~l~~~~d~v~~~~p~e~~~~~~~g~~~~~vG~P~~d~~~~~~~~~~~~~ 85 (261)
+.+++. |||++ ++.+|+.|+|..| +++++.+.+|.+++.++++.++|++.|.++.++|||+++....
T Consensus 103 ~~a~~~-~ip~i-~~~~~~~~~~~~~--~~~~~~~~~d~i~~~~~~~~~~~~~~g~~~~~~G~p~~~~~~~--------- 169 (380)
T PRK00025 103 KKLRKA-GIPTI-HYVSPSVWAWRQG--RAFKIAKATDHVLALFPFEAAFYDKLGVPVTFVGHPLADAIPL--------- 169 (380)
T ss_pred HHHHHC-CCCEE-EEeCCchhhcCch--HHHHHHHHHhhheeCCccCHHHHHhcCCCeEEECcCHHHhccc---------
Confidence 345555 99995 7789999999976 8888989999999999999999988888999999999875321
Q ss_pred cccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcC
Q 024872 86 CELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKW 165 (261)
Q Consensus 86 ~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~ 165 (261)
..++...++++++++++++|+++||||+++.+..++.++++++.+.++.|++++++++++.. .++.+++.+++.
T Consensus 170 -----~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~-~~~~~~~~~~~~ 243 (380)
T PRK00025 170 -----LPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPK-RREQIEEALAEY 243 (380)
T ss_pred -----ccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChh-hHHHHHHHHhhc
Confidence 12356678899999888999999999999888778899999999987778999999987322 334466666655
Q ss_pred -CCCEEEecCCCcchHHHHHHHcceeEEechHHHHHHHHcCCCEEEEEcCChHHHHHHHhcccCCccchhhhhcCCCCcc
Q 024872 166 -PVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAHFLTEWFIRYKAKIPYISLPNILLDSPIIP 244 (261)
Q Consensus 166 -~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tlEa~~~G~P~Vv~~~~~~~~~~ia~~~~~~~~~~l~Nil~~~~i~p 244 (261)
+.++.+.. +++.++|++||++|++||++|+|+|++|+|+|++|+.+++++++++.+.++++.+++|+++++.+.|
T Consensus 244 ~~~~v~~~~----~~~~~~~~~aDl~v~~sG~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (380)
T PRK00025 244 AGLEVTLLD----GQKREAMAAADAALAASGTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVP 319 (380)
T ss_pred CCCCeEEEc----ccHHHHHHhCCEEEECccHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcch
Confidence 55555543 3799999999999999999999999999999999999999999999988999999999999999999
Q ss_pred cccCCCCCHHHHHHHh
Q 024872 245 EALLQACTPDTLTHLL 260 (261)
Q Consensus 245 E~lq~~~~~~~i~~~~ 260 (261)
|++|++.+++++++.+
T Consensus 320 ~~~~~~~~~~~l~~~i 335 (380)
T PRK00025 320 ELLQEEATPEKLARAL 335 (380)
T ss_pred hhcCCCCCHHHHHHHH
Confidence 9999999999998765
No 7
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.96 E-value=1.5e-28 Score=227.64 Aligned_cols=199 Identities=17% Similarity=0.228 Sum_probs=152.7
Q ss_pred hhcCCCCeEE---EEeCCccc------------cccCCcchH------HHH-HhchhhheecCcchHHHHHHcCCCeEEE
Q 024872 9 HERLNGPAHF---HYVAPSFW------------AWKGGEARL------KNL-AAFVDHILCILPNEEAICRLNGLAATFV 66 (261)
Q Consensus 9 ~~~~~ip~~~---~yv~p~~w------------aw~~g~~r~------~~l-~~~~d~v~~~~p~e~~~~~~~g~~~~~v 66 (261)
+...|+|+++ |+ +..+| .--+| .+ +++ .++||.+++.++++.++|+++|++++||
T Consensus 109 A~~~~~p~~~~~~~e-sn~~~~~~~~~~~~~~~~~~~G--~~~~p~e~n~l~~~~a~~v~~~~~~t~~~l~~~g~k~~~v 185 (396)
T TIGR03492 109 AWLSGKPYAFVGTAK-SDYYWESGPRRSPSDEYHRLEG--SLYLPWERWLMRSRRCLAVFVRDRLTARDLRRQGVRASYL 185 (396)
T ss_pred HHHcCCCceEEEeec-cceeecCCCCCccchhhhccCC--CccCHHHHHHhhchhhCEEeCCCHHHHHHHHHCCCeEEEe
Confidence 3444999988 65 33332 11145 55 675 7999999999999999999999999999
Q ss_pred cCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEE
Q 024872 67 GHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVI 146 (261)
Q Consensus 67 G~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi 146 (261)
|||++|.+.. ..+ .+++++.++|+++||||++|+.+.+|.|+++++.+.++ ++++|++
T Consensus 186 GnPv~d~l~~---------------~~~------~~l~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~-~~~~~v~ 243 (396)
T TIGR03492 186 GNPMMDGLEP---------------PER------KPLLTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDS-QPFVFLA 243 (396)
T ss_pred CcCHHhcCcc---------------ccc------cccCCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhC-CCeEEEE
Confidence 9999997641 111 16677889999999999999888899999999999766 7899999
Q ss_pred EeCCCcchHHHHHHHHhcCCC----------------CEEEecCCCcchHHHHHHHcceeEEechHHHHHHHHcCCCEEE
Q 024872 147 HVAPNRHVENYITGLIQKWPV----------------PSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVV 210 (261)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~----------------~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tlEa~~~G~P~Vv 210 (261)
+++++.+. +.+++.+.+.+. ++.+..+ .+++.++|++||++|++|||+|+|++++|+|+|+
T Consensus 244 ~~~~~~~~-~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~l~~ADlvI~rSGt~T~E~a~lg~P~Il 320 (396)
T TIGR03492 244 AIVPSLSL-EKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLG--RGAFAEILHWADLGIAMAGTATEQAVGLGKPVIQ 320 (396)
T ss_pred EeCCCCCH-HHHHHHHHhcCceecCCccccchhhccCceEEEec--hHhHHHHHHhCCEEEECcCHHHHHHHHhCCCEEE
Confidence 99665544 335554442221 1444433 4689999999999999999999999999999999
Q ss_pred EE-cCChHHHHHHHhcccC--Cccchhh
Q 024872 211 AY-RAHFLTEWFIRYKAKI--PYISLPN 235 (261)
Q Consensus 211 ~~-~~~~~~~~ia~~~~~~--~~~~l~N 235 (261)
+| +.+++++.++++..++ .++.++|
T Consensus 321 ip~~~~q~na~~~~~~~~l~g~~~~l~~ 348 (396)
T TIGR03492 321 LPGKGPQFTYGFAEAQSRLLGGSVFLAS 348 (396)
T ss_pred EeCCCCHHHHHHHHhhHhhcCCEEecCC
Confidence 98 8999988887766554 5655543
No 8
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.89 E-value=4.3e-22 Score=182.00 Aligned_cols=207 Identities=13% Similarity=0.092 Sum_probs=145.0
Q ss_pred chhhhcCCCCeEEEEeCCccccccCCcchHHHH-HhchhhheecCcchHHHHHHcCCCeEEEcCCCccchhhhcCCCCCC
Q 024872 6 RYSHERLNGPAHFHYVAPSFWAWKGGEARLKNL-AAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGPE 84 (261)
Q Consensus 6 ~~~~~~~~ip~~~~yv~p~~waw~~g~~r~~~l-~~~~d~v~~~~p~e~~~~~~~g~~~~~vG~P~~d~~~~~~~~~~~~ 84 (261)
-.|++.+|+|+++|.. .+ .+| +++++ .+++|.+++.||...+.+.+ .++++||+|+++.+.+
T Consensus 107 ~~aa~~~~~p~~i~e~-n~----~~g--~~nr~~~~~a~~v~~~f~~~~~~~~~--~k~~~tG~Pvr~~~~~-------- 169 (352)
T PRK12446 107 VIGGWLNRVPVLLHES-DM----TPG--LANKIALRFASKIFVTFEEAAKHLPK--EKVIYTGSPVREEVLK-------- 169 (352)
T ss_pred HHHHHHcCCCEEEECC-CC----Ccc--HHHHHHHHhhCEEEEEccchhhhCCC--CCeEEECCcCCccccc--------
Confidence 4566666999988863 23 357 99885 99999999999887766653 3578999999987531
Q ss_pred CcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhc
Q 024872 85 PCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQK 164 (261)
Q Consensus 85 ~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~ 164 (261)
.++...++.+++++++++||++|||+|+. ..+..+.+++..+. .++++++++|++ ++++....
T Consensus 170 -------~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~--~in~~~~~~l~~l~---~~~~vv~~~G~~-~~~~~~~~---- 232 (352)
T PRK12446 170 -------GNREKGLAFLGFSRKKPVITIMGGSLGAK--KINETVREALPELL---LKYQIVHLCGKG-NLDDSLQN---- 232 (352)
T ss_pred -------ccchHHHHhcCCCCCCcEEEEECCccchH--HHHHHHHHHHHhhc---cCcEEEEEeCCc-hHHHHHhh----
Confidence 12455667889999999999999999973 22234555555553 258999999975 33332221
Q ss_pred CCCCEEEecCCCcchHHHHHHHcceeEEechHHHH-HHHHcCCCEEEEEcCC-hH-HHHH--HHhcccCCccchhhhhcC
Q 024872 165 WPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAV-ELQLARLPCVVAYRAH-FL-TEWF--IRYKAKIPYISLPNILLD 239 (261)
Q Consensus 165 ~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tl-Ea~~~G~P~Vv~~~~~-~~-~~~i--a~~~~~~~~~~l~Nil~~ 239 (261)
.. ++.++ +|..++|+++|++||++||++|++|+ |++++|+|+|++.-.. .. .++. ++++. +
T Consensus 233 ~~-~~~~~-~f~~~~m~~~~~~adlvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~------------~ 298 (352)
T PRK12446 233 KE-GYRQF-EYVHGELPDILAITDFVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFE------------R 298 (352)
T ss_pred cC-CcEEe-cchhhhHHHHHHhCCEEEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHH------------H
Confidence 11 23334 44236899999999999999999887 9999999999873211 10 1222 44333 3
Q ss_pred CCCcccccCCCCCHHHHHHHh
Q 024872 240 SPIIPEALLQACTPDTLTHLL 260 (261)
Q Consensus 240 ~~i~pE~lq~~~~~~~i~~~~ 260 (261)
..+.+++.|+++|+++|.+++
T Consensus 299 ~g~~~~l~~~~~~~~~l~~~l 319 (352)
T PRK12446 299 QGYASVLYEEDVTVNSLIKHV 319 (352)
T ss_pred CCCEEEcchhcCCHHHHHHHH
Confidence 677788888888888887654
No 9
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=4.7e-22 Score=181.28 Aligned_cols=202 Identities=15% Similarity=0.202 Sum_probs=139.4
Q ss_pred hhhhcCCCCeEEEEeCCccccccCCcchHHH-HHhchhhheecCcchHHHHHHcCCCeEEEcCCCccchhhhcCCCCCCC
Q 024872 7 YSHERLNGPAHFHYVAPSFWAWKGGEARLKN-LAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGPEP 85 (261)
Q Consensus 7 ~~~~~~~ip~~~~yv~p~~waw~~g~~r~~~-l~~~~d~v~~~~p~e~~~~~~~g~~~~~vG~P~~d~~~~~~~~~~~~~ 85 (261)
+|++.+|||+++|+ +. -.+| .+++ ++++++.|++.|+....++.+ .++++||+|++..+.+ .
T Consensus 108 ~Aa~~~~iPv~ihE-qn----~~~G--~ank~~~~~a~~V~~~f~~~~~~~~~--~~~~~tG~Pvr~~~~~-~------- 170 (357)
T COG0707 108 IAAKLLGIPVIIHE-QN----AVPG--LANKILSKFAKKVASAFPKLEAGVKP--ENVVVTGIPVRPEFEE-L------- 170 (357)
T ss_pred HHHHhCCCCEEEEe-cC----CCcc--hhHHHhHHhhceeeeccccccccCCC--CceEEecCcccHHhhc-c-------
Confidence 45555599999887 32 2477 8888 499999999999974333322 2488999999987652 1
Q ss_pred cccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcC
Q 024872 86 CELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKW 165 (261)
Q Consensus 86 ~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~ 165 (261)
.....+... ..++++|+++|||+|+. .++..+.++...+.+ ++++++++|++. + +.++....+.
T Consensus 171 -------~~~~~~~~~--~~~~~~ilV~GGS~Ga~--~ln~~v~~~~~~l~~---~~~v~~~~G~~~-~-~~~~~~~~~~ 234 (357)
T COG0707 171 -------PAAEVRKDG--RLDKKTILVTGGSQGAK--ALNDLVPEALAKLAN---RIQVIHQTGKND-L-EELKSAYNEL 234 (357)
T ss_pred -------chhhhhhhc--cCCCcEEEEECCcchhH--HHHHHHHHHHHHhhh---CeEEEEEcCcch-H-HHHHHHHhhc
Confidence 112222222 22889999999999974 233456666666653 699999999854 3 3345555555
Q ss_pred CCCEEEecCCCcchHHHHHHHcceeEEechHHHH-HHHHcCCCEEEEEcCCh---HHHHHHHhcccCCccchhhhhcCCC
Q 024872 166 PVPSILVPGGSSNLKYDAFSASRVALCTSGTVAV-ELQLARLPCVVAYRAHF---LTEWFIRYKAKIPYISLPNILLDSP 241 (261)
Q Consensus 166 ~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tl-Ea~~~G~P~Vv~~~~~~---~~~~ia~~~~~~~~~~l~Nil~~~~ 241 (261)
+. +.+.+ | .+||.++|++||++||+||++|+ |++++|+|+|+++..++ --+.-|+.+.+. +.+-++.+.+
T Consensus 235 ~~-~~v~~-f-~~dm~~~~~~ADLvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~---gaa~~i~~~~ 308 (357)
T COG0707 235 GV-VRVLP-F-IDDMAALLAAADLVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA---GAALVIRQSE 308 (357)
T ss_pred Cc-EEEee-H-HhhHHHHHHhccEEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC---CCEEEecccc
Confidence 54 55553 3 68999999999999999999999 99999999998754444 333347877743 3345565555
Q ss_pred Cccccc
Q 024872 242 IIPEAL 247 (261)
Q Consensus 242 i~pE~l 247 (261)
+.||.|
T Consensus 309 lt~~~l 314 (357)
T COG0707 309 LTPEKL 314 (357)
T ss_pred CCHHHH
Confidence 544443
No 10
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.82 E-value=1.7e-19 Score=166.93 Aligned_cols=171 Identities=10% Similarity=0.139 Sum_probs=123.2
Q ss_pred CCCCeEE---EEeCCccccccCCcchHHHHHhchhhheecCcchHHHHHHcCCC---eEEEcCCCccchhhhcCCCCCCC
Q 024872 12 LNGPAHF---HYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLA---ATFVGHPVVEDCLELNLGKGPEP 85 (261)
Q Consensus 12 ~~ip~~~---~yv~p~~waw~~g~~r~~~l~~~~d~v~~~~p~e~~~~~~~g~~---~~~vG~P~~d~~~~~~~~~~~~~ 85 (261)
.+||++. +|..++.|.|+ .+|.+++.++...+.+.+.|++ +.++|+|+.+.+.+
T Consensus 126 ~~iP~~~v~td~~~~~~w~~~-----------~~d~~~v~s~~~~~~l~~~gi~~~ki~v~GiPv~~~f~~--------- 185 (391)
T PRK13608 126 INIPVATVMTDYRLHKNWITP-----------YSTRYYVATKETKQDFIDVGIDPSTVKVTGIPIDNKFET--------- 185 (391)
T ss_pred CCCCEEEEeCCCCcccccccC-----------CCCEEEECCHHHHHHHHHcCCCHHHEEEECeecChHhcc---------
Confidence 3899953 33455566664 6999999999999898888875 67899999876542
Q ss_pred cccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcC
Q 024872 86 CELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKW 165 (261)
Q Consensus 86 ~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~ 165 (261)
..++.+.++++|+++++++|++++||++. .+.+..+++++ .+..+++++++++|++....+.+++....
T Consensus 186 -----~~~~~~~~~~~~l~~~~~~ilv~~G~lg~--~k~~~~li~~~---~~~~~~~~~vvv~G~~~~l~~~l~~~~~~- 254 (391)
T PRK13608 186 -----PIDQKQWLIDNNLDPDKQTILMSAGAFGV--SKGFDTMITDI---LAKSANAQVVMICGKSKELKRSLTAKFKS- 254 (391)
T ss_pred -----cccHHHHHHHcCCCCCCCEEEEECCCccc--chhHHHHHHHH---HhcCCCceEEEEcCCCHHHHHHHHHHhcc-
Confidence 12345677899999999999999999883 12344455543 23347899988888764333334433322
Q ss_pred CCCEEEecCCCcchHHHHHHHcceeEEechHHHH-HHHHcCCCEEEEEcCC
Q 024872 166 PVPSILVPGGSSNLKYDAFSASRVALCTSGTVAV-ELQLARLPCVVAYRAH 215 (261)
Q Consensus 166 ~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tl-Ea~~~G~P~Vv~~~~~ 215 (261)
..++.+. |+ .++++++|++||++|++||+.|+ ||+++|+|+|++...+
T Consensus 255 ~~~v~~~-G~-~~~~~~~~~~aDl~I~k~gg~tl~EA~a~G~PvI~~~~~p 303 (391)
T PRK13608 255 NENVLIL-GY-TKHMNEWMASSQLMITKPGGITISEGLARCIPMIFLNPAP 303 (391)
T ss_pred CCCeEEE-ec-cchHHHHHHhhhEEEeCCchHHHHHHHHhCCCEEECCCCC
Confidence 2246555 66 57899999999999999998887 9999999999865443
No 11
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.81 E-value=4.4e-19 Score=163.02 Aligned_cols=169 Identities=14% Similarity=0.214 Sum_probs=123.6
Q ss_pred CCCeEE---EEeCCccccccCCcchHHHHHhchhhheecCcchHHHHHHcCCC---eEEEcCCCccchhhhcCCCCCCCc
Q 024872 13 NGPAHF---HYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLA---ATFVGHPVVEDCLELNLGKGPEPC 86 (261)
Q Consensus 13 ~ip~~~---~yv~p~~waw~~g~~r~~~l~~~~d~v~~~~p~e~~~~~~~g~~---~~~vG~P~~d~~~~~~~~~~~~~~ 86 (261)
+||++. +|..++.|.|+ .+|.+++.++...+.+.+.|++ +.++|+|+.+.+..
T Consensus 127 ~ip~~~~~td~~~~~~~~~~-----------~ad~i~~~s~~~~~~l~~~gi~~~ki~v~G~p~~~~f~~---------- 185 (380)
T PRK13609 127 SIPTYNVLTDFCLHKIWVHR-----------EVDRYFVATDHVKKVLVDIGVPPEQVVETGIPIRSSFEL---------- 185 (380)
T ss_pred CCCeEEEeCCCCCCcccccC-----------CCCEEEECCHHHHHHHHHcCCChhHEEEECcccChHHcC----------
Confidence 799841 23456667775 5899999999999999888873 77899998765431
Q ss_pred ccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCC
Q 024872 87 ELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWP 166 (261)
Q Consensus 87 ~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~ 166 (261)
..++...+++++++++++++++++|+++.. +.+..++++ +.+ .+++++++++|++...++.+++..++.+
T Consensus 186 ----~~~~~~~~~~~~l~~~~~~il~~~G~~~~~--k~~~~li~~---l~~-~~~~~~viv~G~~~~~~~~l~~~~~~~~ 255 (380)
T PRK13609 186 ----KINPDIIYNKYQLCPNKKILLIMAGAHGVL--GNVKELCQS---LMS-VPDLQVVVVCGKNEALKQSLEDLQETNP 255 (380)
T ss_pred ----cCCHHHHHHHcCCCCCCcEEEEEcCCCCCC--cCHHHHHHH---Hhh-CCCcEEEEEeCCCHHHHHHHHHHHhcCC
Confidence 123456788999999999999999998742 233344443 433 3789999988764434455666665554
Q ss_pred CCEEEecCCCcchHHHHHHHcceeEEechHHHH-HHHHcCCCEEEEEcC
Q 024872 167 VPSILVPGGSSNLKYDAFSASRVALCTSGTVAV-ELQLARLPCVVAYRA 214 (261)
Q Consensus 167 ~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tl-Ea~~~G~P~Vv~~~~ 214 (261)
.++.++ |+ .+++.++|++||++|+++|+.|+ |||++|+|+|+....
T Consensus 256 ~~v~~~-g~-~~~~~~l~~~aD~~v~~~gg~t~~EA~a~g~PvI~~~~~ 302 (380)
T PRK13609 256 DALKVF-GY-VENIDELFRVTSCMITKPGGITLSEAAALGVPVILYKPV 302 (380)
T ss_pred CcEEEE-ec-hhhHHHHHHhccEEEeCCCchHHHHHHHhCCCEEECCCC
Confidence 457776 65 57899999999999999998887 999999998864333
No 12
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.77 E-value=2.1e-17 Score=152.45 Aligned_cols=155 Identities=14% Similarity=0.165 Sum_probs=112.5
Q ss_pred HhchhhheecCcchHHHHHHcCCC---eEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcC
Q 024872 39 AAFVDHILCILPNEEAICRLNGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPG 115 (261)
Q Consensus 39 ~~~~d~v~~~~p~e~~~~~~~g~~---~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~G 115 (261)
.+.+|.+++.++...+.+.+.|++ ++++|+|+...+... ..+++++|+++|+++++++|+++||
T Consensus 148 ~~~~d~~~~~s~~~~~~l~~~g~~~~ki~v~g~~v~~~f~~~-------------~~~~~~~r~~~gl~~~~~~il~~Gg 214 (382)
T PLN02605 148 HKGVTRCFCPSEEVAKRALKRGLEPSQIRVYGLPIRPSFARA-------------VRPKDELRRELGMDEDLPAVLLMGG 214 (382)
T ss_pred cCCCCEEEECCHHHHHHHHHcCCCHHHEEEECcccCHhhccC-------------CCCHHHHHHHcCCCCCCcEEEEECC
Confidence 357999999999888888888875 688999997654321 1245678999999999999999999
Q ss_pred CcHHHHHhhHHHHHHHHHHHh----hhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeE
Q 024872 116 SRLQEVARMLPIFAKTVELLK----DSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVAL 191 (261)
Q Consensus 116 SR~~ei~~~~~~ll~a~~~l~----~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i 191 (261)
|.+. +. ...+++++..+. ...++.++++++|++..+++.+++. ..+.++.++ |+ .++++++|++||++|
T Consensus 215 ~~g~--~~-~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~~~~~L~~~--~~~~~v~~~-G~-~~~~~~l~~aaDv~V 287 (382)
T PLN02605 215 GEGM--GP-LEETARALGDSLYDKNLGKPIGQVVVICGRNKKLQSKLESR--DWKIPVKVR-GF-VTNMEEWMGACDCII 287 (382)
T ss_pred Cccc--cc-HHHHHHHHHHhhccccccCCCceEEEEECCCHHHHHHHHhh--cccCCeEEE-ec-cccHHHHHHhCCEEE
Confidence 8874 22 234555555432 1136788777888654333434432 223346655 65 578999999999999
Q ss_pred EechHHHH-HHHHcCCCEEEEEc
Q 024872 192 CTSGTVAV-ELQLARLPCVVAYR 213 (261)
Q Consensus 192 ~~SGt~tl-Ea~~~G~P~Vv~~~ 213 (261)
++||+.|+ |||++|+|+|++..
T Consensus 288 ~~~g~~ti~EAma~g~PvI~~~~ 310 (382)
T PLN02605 288 TKAGPGTIAEALIRGLPIILNGY 310 (382)
T ss_pred ECCCcchHHHHHHcCCCEEEecC
Confidence 99998887 99999999998654
No 13
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.72 E-value=1.6e-16 Score=144.48 Aligned_cols=189 Identities=14% Similarity=0.054 Sum_probs=123.8
Q ss_pred ccchhhhcCCCCeEEEEeC-------CccccccCCcchHHHHHhchhhheecCcchHHHHHHcCCC---eEEEcCCCccc
Q 024872 4 AARYSHERLNGPAHFHYVA-------PSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLA---ATFVGHPVVED 73 (261)
Q Consensus 4 ~~~~~~~~~~ip~~~~yv~-------p~~waw~~g~~r~~~l~~~~d~v~~~~p~e~~~~~~~g~~---~~~vG~P~~d~ 73 (261)
++-.+++.+|||++ |..+ ++.|.|. | ..+.+.+|.+++.++...+++.+.|++ +.++|||+.|.
T Consensus 103 ~~~~aa~~~~iPvv-~~~~g~~s~~~~~~~~~~----r-~~~~~~ad~~~~~s~~~~~~l~~~G~~~~kI~vign~v~d~ 176 (363)
T cd03786 103 AAALAAFKLGIPVA-HVEAGLRSFDRGMPDEEN----R-HAIDKLSDLHFAPTEEARRNLLQEGEPPERIFVVGNTMIDA 176 (363)
T ss_pred HHHHHHHHcCCCEE-EEecccccCCCCCCchHH----H-HHHHHHhhhccCCCHHHHHHHHHcCCCcccEEEECchHHHH
Confidence 34444444499985 6543 2223221 1 225678999999999999999888876 77899998876
Q ss_pred hhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHH-HHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCc
Q 024872 74 CLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQE-VARMLPIFAKTVELLKDSFPELITVIHVAPNR 152 (261)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~e-i~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~ 152 (261)
+..... .......++.++++ +++.+++++|++..+ .++.++.++++++++.+. ++++++++++.
T Consensus 177 ~~~~~~-----------~~~~~~~~~~~~~~-~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~--~~~vi~~~~~~- 241 (363)
T cd03786 177 LLRLLE-----------LAKKELILELLGLL-PKKYILVTLHRVENVDDGEQLEEILEALAELAEE--DVPVVFPNHPR- 241 (363)
T ss_pred HHHHHH-----------hhccchhhhhcccC-CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhc--CCEEEEECCCC-
Confidence 542110 01112234567776 455667676655532 245578899999888643 57777776653
Q ss_pred chHHHHHHHHhcCC---CCEEEecCCCcchHHHHHHHcceeEEechHHHHHHHHcCCCEEEEEcC
Q 024872 153 HVENYITGLIQKWP---VPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRA 214 (261)
Q Consensus 153 ~~~~~l~~~~~~~~---~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tlEa~~~G~P~Vv~~~~ 214 (261)
..+.+++...+++ .++.+......+++..+|++||++|++||+++.|++++|+|+|++...
T Consensus 242 -~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sggi~~Ea~~~g~PvI~~~~~ 305 (363)
T cd03786 242 -TRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSGGIQEEASFLGVPVLNLRDR 305 (363)
T ss_pred -hHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCccHHhhhhhcCCCEEeeCCC
Confidence 2344555554432 256665321256899999999999999998888999999999987543
No 14
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.71 E-value=5.9e-16 Score=139.88 Aligned_cols=172 Identities=20% Similarity=0.284 Sum_probs=115.8
Q ss_pred cchhhhcCCCCeEEEEeCCccccccCCcchHHH-HHhchhhheecCcchHHHHHHcCCCeEEEcCCCccchhhhcCCCCC
Q 024872 5 ARYSHERLNGPAHFHYVAPSFWAWKGGEARLKN-LAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGP 83 (261)
Q Consensus 5 ~~~~~~~~~ip~~~~yv~p~~waw~~g~~r~~~-l~~~~d~v~~~~p~e~~~~~~~g~~~~~vG~P~~d~~~~~~~~~~~ 83 (261)
+..+++.+++|++ ++. |.|.++ +..+ +.+.+|++++.+++..+++ +..++|||+.+.+.. .
T Consensus 105 ~~~~~~~~~~p~v-~~~----~~~~~~--~~~~~~~~~~d~ii~~~~~~~~~~-----~~~~i~n~v~~~~~~--~---- 166 (348)
T TIGR01133 105 AGLAAKLLGIPLF-HHE----QNAVPG--LTNKLLSRFAKKVLISFPGAKDHF-----EAVLVGNPVRQEIRS--L---- 166 (348)
T ss_pred HHHHHHHcCCCEE-EEC----CCCCcc--HHHHHHHHHhCeeEECchhHhhcC-----CceEEcCCcCHHHhc--c----
Confidence 3445555589995 442 344444 6645 5788999999999887665 347999998765421 0
Q ss_pred CCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHh
Q 024872 84 EPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQ 163 (261)
Q Consensus 84 ~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~ 163 (261)
. ..+++++++++.++|+++|||++.+ .....+.++++.+.+ ++.++++++|+.. . +.+++.++
T Consensus 167 ---------~--~~~~~~~~~~~~~~i~~~gg~~~~~--~~~~~l~~a~~~l~~--~~~~~~~~~g~~~-~-~~l~~~~~ 229 (348)
T TIGR01133 167 ---------P--VPRERFGLREGKPTILVLGGSQGAK--ILNELVPKALAKLAE--KGIQIVHQTGKND-L-EKVKNVYQ 229 (348)
T ss_pred ---------c--chhhhcCCCCCCeEEEEECCchhHH--HHHHHHHHHHHHHhh--cCcEEEEECCcch-H-HHHHHHHh
Confidence 0 1124678888889999999998853 222345577777764 3567766666532 2 45666666
Q ss_pred cCCCCEEEecCCCcchHHHHHHHcceeEEechHHHH-HHHHcCCCEEEEEc
Q 024872 164 KWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAV-ELQLARLPCVVAYR 213 (261)
Q Consensus 164 ~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tl-Ea~~~G~P~Vv~~~ 213 (261)
+.+..-.+. +...++.++|++||++|++||+.|+ |+|++|+|+|++..
T Consensus 230 ~~~l~~~v~--~~~~~~~~~l~~ad~~v~~~g~~~l~Ea~~~g~Pvv~~~~ 278 (348)
T TIGR01133 230 ELGIEAIVT--FIDENMAAAYAAADLVISRAGASTVAELAAAGVPAILIPY 278 (348)
T ss_pred hCCceEEec--CcccCHHHHHHhCCEEEECCChhHHHHHHHcCCCEEEeeC
Confidence 555321211 1123799999999999999998777 99999999998643
No 15
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.69 E-value=2e-15 Score=138.12 Aligned_cols=197 Identities=15% Similarity=0.061 Sum_probs=128.2
Q ss_pred cccchhhhcCCCCeEEEEeCC--ccccccCCcchHHH--HHhchhhheecCcchHHHHHHcCCC---eEEEcCCCccchh
Q 024872 3 FAARYSHERLNGPAHFHYVAP--SFWAWKGGEARLKN--LAAFVDHILCILPNEEAICRLNGLA---ATFVGHPVVEDCL 75 (261)
Q Consensus 3 ~~~~~~~~~~~ip~~~~yv~p--~~waw~~g~~r~~~--l~~~~d~v~~~~p~e~~~~~~~g~~---~~~vG~P~~d~~~ 75 (261)
+||..+++.+|||++ |.-.. +.+.|.+.....++ +.+.+|.+++.++...+.+.+.|++ +.++|||+.|.+.
T Consensus 100 la~a~aa~~~~ipv~-h~~~g~~s~~~~~~~~~~~~r~~~~~~ad~~~~~s~~~~~~l~~~G~~~~~I~vign~~~d~~~ 178 (365)
T TIGR00236 100 LAGALAAFYLQIPVG-HVEAGLRTGDRYSPMPEEINRQLTGHIADLHFAPTEQAKDNLLRENVKADSIFVTGNTVIDALL 178 (365)
T ss_pred HHHHHHHHHhCCCEE-EEeCCCCcCCCCCCCccHHHHHHHHHHHHhccCCCHHHHHHHHHcCCCcccEEEeCChHHHHHH
Confidence 455556665699994 64211 11121111113323 3567899999999999988887874 6799999877643
Q ss_pred hhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchH
Q 024872 76 ELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVE 155 (261)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~ 155 (261)
.... ...+..++++++. ++++++ +.|+|..+..+.++.+++++.++.++.|+++++++++++....
T Consensus 179 ~~~~-----------~~~~~~~~~~~~~--~~~~vl-~~~hr~~~~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~ 244 (365)
T TIGR00236 179 TNVE-----------IAYSSPVLSEFGE--DKRYIL-LTLHRRENVGEPLENIFKAIREIVEEFEDVQIVYPVHLNPVVR 244 (365)
T ss_pred HHHh-----------hccchhHHHhcCC--CCCEEE-EecCchhhhhhHHHHHHHHHHHHHHHCCCCEEEEECCCChHHH
Confidence 2110 1113455666663 345554 5567765455567889999999887778999999877654333
Q ss_pred HHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechHHHHHHHHcCCCEEEEEcCC
Q 024872 156 NYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAH 215 (261)
Q Consensus 156 ~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tlEa~~~G~P~Vv~~~~~ 215 (261)
+.+.+.. +...++.++......++..+|+.||++++.||++++||+++|+|+|.++..+
T Consensus 245 ~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~Sg~~~~EA~a~g~PvI~~~~~~ 303 (365)
T TIGR00236 245 EPLHKHL-GDSKRVHLIEPLEYLDFLNLAANSHLILTDSGGVQEEAPSLGKPVLVLRDTT 303 (365)
T ss_pred HHHHHHh-CCCCCEEEECCCChHHHHHHHHhCCEEEECChhHHHHHHHcCCCEEECCCCC
Confidence 3233322 2222566664221347889999999999999999899999999999876544
No 16
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.67 E-value=7.4e-15 Score=133.70 Aligned_cols=173 Identities=18% Similarity=0.237 Sum_probs=113.9
Q ss_pred cchhhhcCCCCeEEEEeCCccccccCCcchHHH-HHhchhhheecCcchHHHHHHcCCCeEEEcCCCccchhhhcCCCCC
Q 024872 5 ARYSHERLNGPAHFHYVAPSFWAWKGGEARLKN-LAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGP 83 (261)
Q Consensus 5 ~~~~~~~~~ip~~~~yv~p~~waw~~g~~r~~~-l~~~~d~v~~~~p~e~~~~~~~g~~~~~vG~P~~d~~~~~~~~~~~ 83 (261)
+..+++..++|++.| .. .|.++ +.++ +.+.+|++++.++... .+..+.+++++|||+.+.... .
T Consensus 106 ~~~~~~~~~~p~v~~-~~----~~~~~--~~~r~~~~~~d~ii~~~~~~~--~~~~~~~i~vi~n~v~~~~~~--~---- 170 (357)
T PRK00726 106 GGLAARLLGIPLVIH-EQ----NAVPG--LANKLLARFAKKVATAFPGAF--PEFFKPKAVVTGNPVREEILA--L---- 170 (357)
T ss_pred HHHHHHHcCCCEEEE-cC----CCCcc--HHHHHHHHHhchheECchhhh--hccCCCCEEEECCCCChHhhc--c----
Confidence 445566668999643 22 33344 6666 4778999999987432 222344689999998865421 0
Q ss_pred CCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHh
Q 024872 84 EPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQ 163 (261)
Q Consensus 84 ~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~ 163 (261)
...+++++++++.++|+++||+++.. .....+.++++++.+. + ..+ +.+|... .++ +.+..+
T Consensus 171 -----------~~~~~~~~~~~~~~~i~~~gg~~~~~--~~~~~l~~a~~~~~~~-~-~~~-~~~G~g~-~~~-~~~~~~ 232 (357)
T PRK00726 171 -----------AAPPARLAGREGKPTLLVVGGSQGAR--VLNEAVPEALALLPEA-L-QVI-HQTGKGD-LEE-VRAAYA 232 (357)
T ss_pred -----------cchhhhccCCCCCeEEEEECCcHhHH--HHHHHHHHHHHHhhhC-c-EEE-EEcCCCc-HHH-HHHHhh
Confidence 11224567777888999999988753 2233455888887543 3 334 4444332 233 444444
Q ss_pred cCCCCEEEecCCCcchHHHHHHHcceeEEechHHHH-HHHHcCCCEEEEEc
Q 024872 164 KWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAV-ELQLARLPCVVAYR 213 (261)
Q Consensus 164 ~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tl-Ea~~~G~P~Vv~~~ 213 (261)
++.++.+. |+ .+++.++|++||++|+.||+.|+ |+|++|+|+|++..
T Consensus 233 -~~~~v~~~-g~-~~~~~~~~~~~d~~i~~~g~~~~~Ea~~~g~Pvv~~~~ 280 (357)
T PRK00726 233 -AGINAEVV-PF-IDDMAAAYAAADLVICRAGASTVAELAAAGLPAILVPL 280 (357)
T ss_pred -cCCcEEEe-eh-HhhHHHHHHhCCEEEECCCHHHHHHHHHhCCCEEEecC
Confidence 55555544 55 47899999999999999998777 99999999998753
No 17
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.62 E-value=2.1e-14 Score=129.78 Aligned_cols=174 Identities=17% Similarity=0.205 Sum_probs=118.9
Q ss_pred cchhhhcCCCCeEEEEeCCccccccCCcchHHH-HHhchhhheecCcchHHHHHHcCCCeEEEcCCCccchhhhcCCCCC
Q 024872 5 ARYSHERLNGPAHFHYVAPSFWAWKGGEARLKN-LAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGP 83 (261)
Q Consensus 5 ~~~~~~~~~ip~~~~yv~p~~waw~~g~~r~~~-l~~~~d~v~~~~p~e~~~~~~~g~~~~~vG~P~~d~~~~~~~~~~~ 83 (261)
+..+++..|+|++ ++.+.. .++ ..++ +.+++|++++.++...+++ .+.++.++|||+...+...
T Consensus 104 ~~~~a~~~~~p~v-~~~~~~----~~~--~~~~~~~~~~~~vi~~s~~~~~~~--~~~~~~~i~n~v~~~~~~~------ 168 (350)
T cd03785 104 VGLAAKLLGIPLV-IHEQNA----VPG--LANRLLARFADRVALSFPETAKYF--PKDKAVVTGNPVREEILAL------ 168 (350)
T ss_pred HHHHHHHhCCCEE-EEcCCC----Ccc--HHHHHHHHhhCEEEEcchhhhhcC--CCCcEEEECCCCchHHhhh------
Confidence 3455555599996 443322 233 5555 4677999999998876652 2346789999987554310
Q ss_pred CCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHh
Q 024872 84 EPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQ 163 (261)
Q Consensus 84 ~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~ 163 (261)
... ++++++++++++|++++|+.+.. .....+.++++.+.+ +++++++++|+. . .+.+++.++
T Consensus 169 ----------~~~-~~~~~~~~~~~~i~~~~g~~~~~--~~~~~l~~a~~~l~~--~~~~~~~i~G~g-~-~~~l~~~~~ 231 (350)
T cd03785 169 ----------DRE-RARLGLRPGKPTLLVFGGSQGAR--AINEAVPEALAELLR--KRLQVIHQTGKG-D-LEEVKKAYE 231 (350)
T ss_pred ----------hhh-HHhcCCCCCCeEEEEECCcHhHH--HHHHHHHHHHHHhhc--cCeEEEEEcCCc-c-HHHHHHHHh
Confidence 111 67788998899999998887642 223345577777753 567777666654 2 344566665
Q ss_pred cCCCCEEEecCCCcchHHHHHHHcceeEEechHHHH-HHHHcCCCEEEEE
Q 024872 164 KWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAV-ELQLARLPCVVAY 212 (261)
Q Consensus 164 ~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tl-Ea~~~G~P~Vv~~ 212 (261)
+++.++.+. |+ .+++.++|+.||++|+.||+.|+ |+|++|+|+|++.
T Consensus 232 ~~~~~v~~~-g~-~~~~~~~l~~ad~~v~~sg~~t~~Eam~~G~Pvv~~~ 279 (350)
T cd03785 232 ELGVNYEVF-PF-IDDMAAAYAAADLVISRAGASTVAELAALGLPAILIP 279 (350)
T ss_pred ccCCCeEEe-eh-hhhHHHHHHhcCEEEECCCHhHHHHHHHhCCCEEEee
Confidence 543356655 44 47899999999999999998776 9999999999764
No 18
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.48 E-value=1.7e-12 Score=119.81 Aligned_cols=163 Identities=13% Similarity=0.156 Sum_probs=113.3
Q ss_pred hchhhheecCcchHHHHHHcC--CCeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCc
Q 024872 40 AFVDHILCILPNEEAICRLNG--LAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSR 117 (261)
Q Consensus 40 ~~~d~v~~~~p~e~~~~~~~g--~~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR 117 (261)
+.++++++.+++..+++++.+ .++.++.|++.... +. +..+...+++++++++.++|++. ||
T Consensus 138 ~~~~~ii~~S~~~~~~~~~~~~~~~i~vIpngvd~~~--~~------------~~~~~~~~~~~~~~~~~~~il~~--Gr 201 (380)
T PRK15484 138 DKNAKIIVPSQFLKKFYEERLPNADISIVPNGFCLET--YQ------------SNPQPNLRQQLNISPDETVLLYA--GR 201 (380)
T ss_pred ccCCEEEEcCHHHHHHHHhhCCCCCEEEecCCCCHHH--cC------------CcchHHHHHHhCCCCCCeEEEEe--cc
Confidence 357899999999988887643 24678888875321 21 12234567788998777766654 44
Q ss_pred HHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCc-------chHHHHHHHHhcCCCCEEEecCCC-cchHHHHHHHcce
Q 024872 118 LQEVARMLPIFAKTVELLKDSFPELITVIHVAPNR-------HVENYITGLIQKWPVPSILVPGGS-SNLKYDAFSASRV 189 (261)
Q Consensus 118 ~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~-------~~~~~l~~~~~~~~~~v~v~~g~~-~~~~~~~~~~aDl 189 (261)
.... +..+.+++|++++.++.|+++++++|++.. .+.+.+++.+++++.++.+. |+. .+++.++|++||+
T Consensus 202 l~~~-Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~-G~~~~~~l~~~~~~aDv 279 (380)
T PRK15484 202 ISPD-KGILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIML-GGQPPEKMHNYYPLADL 279 (380)
T ss_pred Cccc-cCHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEe-CCCCHHHHHHHHHhCCE
Confidence 4444 457789999999988889999999987532 12233444555555566665 433 4689999999999
Q ss_pred eEEec------hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 190 ALCTS------GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 190 ~i~~S------Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
+|.+| |.+.+|||++|+|+|. .+.++..+.+
T Consensus 280 ~v~pS~~~E~f~~~~lEAma~G~PVI~-s~~gg~~Eiv 316 (380)
T PRK15484 280 VVVPSQVEEAFCMVAVEAMAAGKPVLA-STKGGITEFV 316 (380)
T ss_pred EEeCCCCccccccHHHHHHHcCCCEEE-eCCCCcHhhc
Confidence 99988 4566799999999886 4555555544
No 19
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.44 E-value=5.1e-12 Score=116.68 Aligned_cols=165 Identities=18% Similarity=0.212 Sum_probs=114.4
Q ss_pred HHhchhhheecCcchHHHHH-HcCC---CeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEE
Q 024872 38 LAAFVDHILCILPNEEAICR-LNGL---AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLL 113 (261)
Q Consensus 38 l~~~~d~v~~~~p~e~~~~~-~~g~---~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll 113 (261)
+.+.+|.+++.++...+.+. ..|. ++.++.|++.... +. +.++...++++++++++++|+++
T Consensus 160 ~~~~~d~vi~~s~~~~~~~~~~~~~~~~ki~vi~ngvd~~~--~~------------~~~~~~~~~~~~~~~~~~~i~~~ 225 (405)
T TIGR03449 160 LVDNADRLIANTDEEARDLVRHYDADPDRIDVVAPGADLER--FR------------PGDRATERARLGLPLDTKVVAFV 225 (405)
T ss_pred HHHhcCeEEECCHHHHHHHHHHcCCChhhEEEECCCcCHHH--cC------------CCcHHHHHHhcCCCCCCcEEEEe
Confidence 56679999999998776654 4454 3668888875332 11 12345667889998888777765
Q ss_pred cCCcHHHHHhhHHHHHHHHHHHhhhCCC--eEEEEEeCCCc---chHHHHHHHHhcCCC--CEEEecCCC-cchHHHHHH
Q 024872 114 PGSRLQEVARMLPIFAKTVELLKDSFPE--LITVIHVAPNR---HVENYITGLIQKWPV--PSILVPGGS-SNLKYDAFS 185 (261)
Q Consensus 114 ~GSR~~ei~~~~~~ll~a~~~l~~~~~~--~~~vi~~~~~~---~~~~~l~~~~~~~~~--~v~v~~g~~-~~~~~~~~~ 185 (261)
| |.... ++.+.++++++.+.++.|+ ++++++|++.. ...+.+++..++.+. ++.+. |+. .+++.++|+
T Consensus 226 -G-~l~~~-K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~-g~~~~~~~~~~l~ 301 (405)
T TIGR03449 226 -G-RIQPL-KAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFL-PPRPPEELVHVYR 301 (405)
T ss_pred -c-CCCcc-cCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEEC-CCCCHHHHHHHHH
Confidence 3 44333 4577899999999877776 99999986421 223446666665544 45554 443 468999999
Q ss_pred HcceeEEec-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 186 ASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 186 ~aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
.||+++.+| |.+.+|||++|+|+|. .+.++....+
T Consensus 302 ~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~-~~~~~~~e~i 341 (405)
T TIGR03449 302 AADVVAVPSYNESFGLVAMEAQACGTPVVA-ARVGGLPVAV 341 (405)
T ss_pred hCCEEEECCCCCCcChHHHHHHHcCCCEEE-ecCCCcHhhh
Confidence 999999988 7777899999999986 5555555443
No 20
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.42 E-value=1.2e-11 Score=111.13 Aligned_cols=195 Identities=19% Similarity=0.196 Sum_probs=123.1
Q ss_pred hhhhcCCCCeEEEEeCCccccccCCcchHHHHHhchhhheecCcchHHHHH-HcCC---CeEEEcCCCccchhhhcCCCC
Q 024872 7 YSHERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICR-LNGL---AATFVGHPVVEDCLELNLGKG 82 (261)
Q Consensus 7 ~~~~~~~ip~~~~yv~p~~waw~~g~~r~~~l~~~~d~v~~~~p~e~~~~~-~~g~---~~~~vG~P~~d~~~~~~~~~~ 82 (261)
.+.+..++|++ +.++.. |... ...+.+.+.+|.+++.++...+.++ ..|. ++.+++|++..... ....
T Consensus 95 ~~~~~~~~~~i-~~~h~~-~~~~---~~~~~~~~~~~~vi~~s~~~~~~~~~~~~~~~~k~~~i~ngi~~~~~--~~~~- 166 (355)
T cd03819 95 LAARRTRPPFV-TTVHGF-YSVN---FRYNAIMARGDRVIAVSNFIADHIRENYGVDPDRIRVIPRGVDLDRF--DPGA- 166 (355)
T ss_pred HHHHhcCCCEE-EEeCCc-hhhH---HHHHHHHHhcCEEEEeCHHHHHHHHHhcCCChhhEEEecCCcccccc--Cccc-
Confidence 33344489985 443332 2211 1234456679999999998888886 4554 36788888653321 1100
Q ss_pred CCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcc--hHHHHHH
Q 024872 83 PEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRH--VENYITG 160 (261)
Q Consensus 83 ~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~--~~~~l~~ 160 (261)
........++++++++++.++++.. | |.... +..+.+++++..+.++.++++++++|.+... +.+.+.+
T Consensus 167 ------~~~~~~~~~~~~~~~~~~~~~i~~~-G-r~~~~-Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~ 237 (355)
T cd03819 167 ------VPPERILALAREWPLPKGKPVILLP-G-RLTRW-KGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLE 237 (355)
T ss_pred ------cchHHHHHHHHHcCCCCCceEEEEe-e-ccccc-cCHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHH
Confidence 0000112256778887777666544 4 33322 4567899999999877788999999876432 2222333
Q ss_pred HHhcCCC--CEEEecCCCcchHHHHHHHcceeEEec------hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 161 LIQKWPV--PSILVPGGSSNLKYDAFSASRVALCTS------GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 161 ~~~~~~~--~v~v~~g~~~~~~~~~~~~aDl~i~~S------Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
.+++.+. ++.+. |+ .+++.++|++||+++.+| |.+.+|||++|+|+|+ +..++....+
T Consensus 238 ~~~~~~~~~~v~~~-g~-~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~-~~~~~~~e~i 303 (355)
T cd03819 238 LIKRLGLQDRVTFV-GH-CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIA-SDHGGARETV 303 (355)
T ss_pred HHHHcCCcceEEEc-CC-cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEE-cCCCCcHHHH
Confidence 4444433 46665 54 678999999999999998 5666799999999986 5566666555
No 21
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.41 E-value=1.4e-11 Score=112.67 Aligned_cols=163 Identities=12% Similarity=0.149 Sum_probs=110.7
Q ss_pred HHhchhhheecCcchHHHHHHc--CC---CeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEE
Q 024872 38 LAAFVDHILCILPNEEAICRLN--GL---AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISL 112 (261)
Q Consensus 38 l~~~~d~v~~~~p~e~~~~~~~--g~---~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIll 112 (261)
..+.+|.+++.++...+.+.+. |+ ++.++.|++..... . +..+...++++++++++++|++
T Consensus 141 ~~~~ad~vi~~S~~~~~~~~~~~~~~~~~~i~vi~ng~~~~~~--~------------~~~~~~~~~~~~~~~~~~~i~~ 206 (388)
T TIGR02149 141 AIEAADRVIAVSGGMREDILKYYPDLDPEKVHVIYNGIDTKEY--K------------PDDGNVVLDRYGIDRSRPYILF 206 (388)
T ss_pred HHhhCCEEEEccHHHHHHHHHHcCCCCcceEEEecCCCChhhc--C------------CCchHHHHHHhCCCCCceEEEE
Confidence 4667999999999887777543 33 35678887643221 1 1234567788999888887776
Q ss_pred EcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcc--hHHHHHHHHhcCCC---CEEEecCCC-cchHHHHHHH
Q 024872 113 LPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRH--VENYITGLIQKWPV---PSILVPGGS-SNLKYDAFSA 186 (261)
Q Consensus 113 l~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~--~~~~l~~~~~~~~~---~v~v~~g~~-~~~~~~~~~~ 186 (261)
+ ||... .+..+.++++++++. +++++++++++... +.+.+++..++.+. ++.++.+.+ .+++.++|++
T Consensus 207 ~--Grl~~-~Kg~~~li~a~~~l~---~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 280 (388)
T TIGR02149 207 V--GRITR-QKGVPHLLDAVHYIP---KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSN 280 (388)
T ss_pred E--ccccc-ccCHHHHHHHHHHHh---hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHh
Confidence 6 45543 345788999998885 46788877664321 23344554444432 355554432 4689999999
Q ss_pred cceeEEec-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 187 SRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 187 aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
||++|.+| |.+.+|||++|+|+|+ .+.++..+.+
T Consensus 281 aDv~v~ps~~e~~g~~~lEA~a~G~PvI~-s~~~~~~e~i 319 (388)
T TIGR02149 281 AEVFVCPSIYEPLGIVNLEAMACGTPVVA-SATGGIPEVV 319 (388)
T ss_pred CCEEEeCCccCCCChHHHHHHHcCCCEEE-eCCCCHHHHh
Confidence 99999988 7788899999999886 5556666555
No 22
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.37 E-value=3e-11 Score=110.29 Aligned_cols=197 Identities=15% Similarity=0.159 Sum_probs=120.3
Q ss_pred chhhhcCCCCeEEEEeCCc-cccccCC---cchHHHH-HhchhhheecCcchHHHHHH-cCCC---eEEEcCCCccchhh
Q 024872 6 RYSHERLNGPAHFHYVAPS-FWAWKGG---EARLKNL-AAFVDHILCILPNEEAICRL-NGLA---ATFVGHPVVEDCLE 76 (261)
Q Consensus 6 ~~~~~~~~ip~~~~yv~p~-~waw~~g---~~r~~~l-~~~~d~v~~~~p~e~~~~~~-~g~~---~~~vG~P~~d~~~~ 76 (261)
+++++..++|..+|....+ .+.+... .+..+++ .+.+|.+++.++...+++.+ .|++ +.++.|++..+.
T Consensus 96 ~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vs~~~~~~~~~~~~~~~~~~~vi~ngvd~~~-- 173 (374)
T TIGR03088 96 QLPAALAGVPARIHGEHGRDVFDLDGSNWKYRWLRRLYRPLIHHYVAVSRDLEDWLRGPVKVPPAKIHQIYNGVDTER-- 173 (374)
T ss_pred HHHHHhcCCCeEEEeecCcccccchhhHHHHHHHHHHHHhcCCeEEEeCHHHHHHHHHhcCCChhhEEEeccCccccc--
Confidence 3444444888766642211 1111110 1123343 55689999999988888754 3543 567888875332
Q ss_pred hcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCC----CeEEEEEeCCCc
Q 024872 77 LNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFP----ELITVIHVAPNR 152 (261)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~----~~~~vi~~~~~~ 152 (261)
+.. ....+...++....++++.+|+.+ +|..+ .++.+.+++++.++.++.+ +++++++|++.
T Consensus 174 ~~~----------~~~~~~~~~~~~~~~~~~~~i~~v--Grl~~-~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~- 239 (374)
T TIGR03088 174 FHP----------SRGDRSPILPPDFFADESVVVGTV--GRLQA-VKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGP- 239 (374)
T ss_pred cCC----------CccchhhhhHhhcCCCCCeEEEEE--ecCCc-ccCHHHHHHHHHHHHHhCcccccceEEEEecCCc-
Confidence 111 011122233333445555566554 34443 3457889999999876654 68999998753
Q ss_pred chHHHHHHHHhcCCCC-EEEecCCCcchHHHHHHHcceeEEec-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 153 HVENYITGLIQKWPVP-SILVPGGSSNLKYDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 153 ~~~~~l~~~~~~~~~~-v~v~~g~~~~~~~~~~~~aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
. .+.+++.+++.+.. ...+.|+ .+++.++|++||++|++| |.+.+|||++|+|+|+ .+.++..+.+
T Consensus 240 ~-~~~~~~~~~~~~~~~~v~~~g~-~~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~-s~~~g~~e~i 311 (374)
T TIGR03088 240 A-RGACEQMVRAAGLAHLVWLPGE-RDDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVIA-TAVGGNPELV 311 (374)
T ss_pred h-HHHHHHHHHHcCCcceEEEcCC-cCCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEEE-cCCCCcHHHh
Confidence 2 34466666655542 2234465 678999999999999988 6677799999999986 5556666554
No 23
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.37 E-value=4.5e-11 Score=107.49 Aligned_cols=163 Identities=14% Similarity=0.110 Sum_probs=110.0
Q ss_pred HHhchhhheecCcchHHHHHHc--CCCeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcC
Q 024872 38 LAAFVDHILCILPNEEAICRLN--GLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPG 115 (261)
Q Consensus 38 l~~~~d~v~~~~p~e~~~~~~~--g~~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~G 115 (261)
+.+.+|.+++.++...+.+... .-++.++.|++.... +.. .+..++ .++..+.++++++|+.. |
T Consensus 134 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~vi~ngvd~~~--~~~----------~~~~~~-~~~~~~~~~~~~~i~~v-G 199 (358)
T cd03812 134 INRLATDYLACSEEAGKWLFGKVKNKKFKVIPNGIDLEK--FIF----------NEEIRK-KRRELGILEDKFVIGHV-G 199 (358)
T ss_pred HHhcCCEEEEcCHHHHHHHHhCCCcccEEEEeccCcHHH--cCC----------Cchhhh-HHHHcCCCCCCEEEEEE-e
Confidence 3667899999999887777542 234677888764321 111 011122 25566777777766655 4
Q ss_pred CcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCC--CEEEecCCCcchHHHHHHHcceeEEe
Q 024872 116 SRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV--PSILVPGGSSNLKYDAFSASRVALCT 193 (261)
Q Consensus 116 SR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~--~v~v~~g~~~~~~~~~~~~aDl~i~~ 193 (261)
+ ... .++.+.+++++..+.++.++++++++|++.. .+.+++.+++.+. ++.+. |+ .+++.++|+.||++|.+
T Consensus 200 r-~~~-~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~--~~~~~~~~~~~~~~~~v~~~-g~-~~~~~~~~~~adi~v~p 273 (358)
T cd03812 200 R-FSE-QKNHEFLIEIFAELLKKNPNAKLLLVGDGEL--EEEIKKKVKELGLEDKVIFL-GV-RNDVPELLQAMDVFLFP 273 (358)
T ss_pred c-ccc-ccChHHHHHHHHHHHHhCCCeEEEEEeCCch--HHHHHHHHHhcCCCCcEEEe-cc-cCCHHHHHHhcCEEEec
Confidence 3 333 3457889999999988889999999987642 3445655554443 45555 54 57899999999999999
Q ss_pred c-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 194 S-----GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 194 S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
| |.+.+|||++|+|+|.. ..++....+
T Consensus 274 s~~E~~~~~~lEAma~G~PvI~s-~~~~~~~~i 305 (358)
T cd03812 274 SLYEGLPLVLIEAQASGLPCILS-DTITKEVDL 305 (358)
T ss_pred ccccCCCHHHHHHHHhCCCEEEE-cCCchhhhh
Confidence 8 56777999999999864 444444433
No 24
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.37 E-value=2.3e-11 Score=112.86 Aligned_cols=159 Identities=14% Similarity=0.135 Sum_probs=108.5
Q ss_pred HHhchhhheecCcchHHHHHHcCCC---eEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEc
Q 024872 38 LAAFVDHILCILPNEEAICRLNGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLP 114 (261)
Q Consensus 38 l~~~~d~v~~~~p~e~~~~~~~g~~---~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~ 114 (261)
+.+.+|.+++.++...+.+++.|.+ +.++.|++..+. +.+. ....+..+++++++++++++|++ .
T Consensus 168 ~~~~ad~ii~~S~~~~~~~~~~~~~~~~i~vi~ngvd~~~--~~~~---------~~~~~~~~~~~~~~~~~~~~i~~-~ 235 (412)
T PRK10307 168 LLRRFDNVSTISRSMMNKAREKGVAAEKVIFFPNWSEVAR--FQPV---------ADADVDALRAQLGLPDGKKIVLY-S 235 (412)
T ss_pred HHhhCCEEEecCHHHHHHHHHcCCCcccEEEECCCcCHhh--cCCC---------CccchHHHHHHcCCCCCCEEEEE-c
Confidence 3556999999999998888776653 667888875322 2110 01113457788999877776665 4
Q ss_pred CCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCC-CEEEecCCC-cchHHHHHHHcceeEE
Q 024872 115 GSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV-PSILVPGGS-SNLKYDAFSASRVALC 192 (261)
Q Consensus 115 GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~-~v~v~~g~~-~~~~~~~~~~aDl~i~ 192 (261)
|+-+ +. +++..++++++++.+ .++++|+++|++. ..+.+++.+++.+. ++.+. |+. .+++.++|++||+++.
T Consensus 236 G~l~-~~-kg~~~li~a~~~l~~-~~~~~l~ivG~g~--~~~~l~~~~~~~~l~~v~f~-G~~~~~~~~~~~~~aDi~v~ 309 (412)
T PRK10307 236 GNIG-EK-QGLELVIDAARRLRD-RPDLIFVICGQGG--GKARLEKMAQCRGLPNVHFL-PLQPYDRLPALLKMADCHLL 309 (412)
T ss_pred Cccc-cc-cCHHHHHHHHHHhcc-CCCeEEEEECCCh--hHHHHHHHHHHcCCCceEEe-CCCCHHHHHHHHHhcCEeEE
Confidence 5443 33 457789999988854 5789999998763 23456666664443 46655 543 4689999999999998
Q ss_pred ec--h-------HHHHHHHHcCCCEEEEEcC
Q 024872 193 TS--G-------TVAVELQLARLPCVVAYRA 214 (261)
Q Consensus 193 ~S--G-------t~tlEa~~~G~P~Vv~~~~ 214 (261)
+| + +..+|+|++|+|+|.....
T Consensus 310 ps~~e~~~~~~p~kl~eama~G~PVi~s~~~ 340 (412)
T PRK10307 310 PQKAGAADLVLPSKLTNMLASGRNVVATAEP 340 (412)
T ss_pred eeccCcccccCcHHHHHHHHcCCCEEEEeCC
Confidence 76 1 2245999999999875443
No 25
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.36 E-value=5.4e-12 Score=122.07 Aligned_cols=146 Identities=10% Similarity=0.021 Sum_probs=101.3
Q ss_pred hhhheecCcchHHHHHHcCCCeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHH
Q 024872 42 VDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEV 121 (261)
Q Consensus 42 ~d~v~~~~p~e~~~~~~~g~~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei 121 (261)
||++++.+.... .+.+. .+...|.+...+ |. +..+...++++|++.+.+.++++ +|..+.
T Consensus 499 cD~VIaPS~atq-~L~~~---vI~nVnGVDte~--F~------------P~~r~~~~r~lgi~~~~kgiLfV--GRLa~E 558 (794)
T PLN02501 499 CHKVLRLSAATQ-DLPKS---VICNVHGVNPKF--LK------------IGEKVAEERELGQQAFSKGAYFL--GKMVWA 558 (794)
T ss_pred CCEEEcCCHHHH-Hhccc---ceeecccccccc--cC------------CcchhHHHHhcCCccccCceEEE--Eccccc
Confidence 799998885554 34332 222335443332 21 22233344667776655556665 577654
Q ss_pred HhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEec-----hH
Q 024872 122 ARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTS-----GT 196 (261)
Q Consensus 122 ~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~S-----Gt 196 (261)
+++..++++++.+.++.++++++++|++. . ++.+++++++.++.+.++ |. .++..++|+.+|++|.+| |.
T Consensus 559 -KGld~LLeAla~L~~~~pnvrLvIVGDGP-~-reeLe~la~eLgL~V~FL-G~-~dd~~~lyasaDVFVlPS~sEgFGl 633 (794)
T PLN02501 559 -KGYRELIDLLAKHKNELDGFNLDVFGNGE-D-AHEVQRAAKRLDLNLNFL-KG-RDHADDSLHGYKVFINPSISDVLCT 633 (794)
T ss_pred -CCHHHHHHHHHHHHhhCCCeEEEEEcCCc-c-HHHHHHHHHHcCCEEEec-CC-CCCHHHHHHhCCEEEECCCcccchH
Confidence 45788999999988777899999998763 3 355777777776666665 43 567788999999999999 78
Q ss_pred HHHHHHHcCCCEEEEE
Q 024872 197 VAVELQLARLPCVVAY 212 (261)
Q Consensus 197 ~tlEa~~~G~P~Vv~~ 212 (261)
+++|||+||+|+|...
T Consensus 634 VlLEAMA~GlPVVATd 649 (794)
T PLN02501 634 ATAEALAMGKFVVCAD 649 (794)
T ss_pred HHHHHHHcCCCEEEec
Confidence 8899999999998754
No 26
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.35 E-value=3.3e-11 Score=114.21 Aligned_cols=176 Identities=14% Similarity=0.137 Sum_probs=113.9
Q ss_pred HHhchhhheecCcchHHHHHHc-------------CCCeEEEcCCCccchhhhcCCCCC--CC----ccc-ccCCCcHHH
Q 024872 38 LAAFVDHILCILPNEEAICRLN-------------GLAATFVGHPVVEDCLELNLGKGP--EP----CEL-KMEGNSEDF 97 (261)
Q Consensus 38 l~~~~d~v~~~~p~e~~~~~~~-------------g~~~~~vG~P~~d~~~~~~~~~~~--~~----~~~-~~~~~~~~~ 97 (261)
..+.+|.+++++|...+.+... ..++..+-|.+..+. +++..+. .. ..+ .....+..+
T Consensus 202 ~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~ki~~I~NGid~~~--~~p~~~~~~~~~~~~~~~~~k~~~k~~l 279 (473)
T TIGR02095 202 GIVYADRVTTVSPTYAREILTPEFGYGLDGVLKARSGKLRGILNGIDTEV--WNPATDPYLKANYSADDLAGKAENKEAL 279 (473)
T ss_pred HHHhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCCeEEEeCCCCccc--cCCCCCcccccCcCccchhhhhhhHHHH
Confidence 4678999999999866555321 124555555554221 2211000 00 000 001124567
Q ss_pred HhhcCCCC--CCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCC
Q 024872 98 KNKYSVPS--GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGG 175 (261)
Q Consensus 98 r~~l~l~~--~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~ 175 (261)
++++|+++ +.++|+++ +|..+.| ..+.++++++++.++ +++++++|++...+.+.++++.++.+.++.+..++
T Consensus 280 ~~~~gl~~~~~~~~i~~v--Grl~~~K-g~~~li~a~~~l~~~--~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~ 354 (473)
T TIGR02095 280 QEELGLPVDDDVPLFGVI--SRLTQQK-GVDLLLAALPELLEL--GGQLVVLGTGDPELEEALRELAERYPGNVRVIIGY 354 (473)
T ss_pred HHHcCCCccCCCCEEEEE--ecCcccc-ChHHHHHHHHHHHHc--CcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 88999986 67777776 4665544 578899999998753 59999998764345555666666555556665554
Q ss_pred CcchHHHHHHHcceeEEec-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 176 SSNLKYDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 176 ~~~~~~~~~~~aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
..+.+..+|++||+++.+| |.+.+|||++|+|+|+ .+.+++...+
T Consensus 355 ~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~-s~~gg~~e~v 404 (473)
T TIGR02095 355 DEALAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIV-RRTGGLADTV 404 (473)
T ss_pred CHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEE-ccCCCccceE
Confidence 3445788999999999998 7788899999999886 5665555433
No 27
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.35 E-value=4.6e-11 Score=108.24 Aligned_cols=161 Identities=14% Similarity=0.116 Sum_probs=112.1
Q ss_pred HHhchhhheecCcchHHHHHHcC---CCeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEc
Q 024872 38 LAAFVDHILCILPNEEAICRLNG---LAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLP 114 (261)
Q Consensus 38 l~~~~d~v~~~~p~e~~~~~~~g---~~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~ 114 (261)
..+.+|.+++.++...+.+.+.+ -++.+++|++.... +. +......++++++++++++++.++
T Consensus 139 ~~~~~d~ii~~s~~~~~~~~~~~~~~~~i~vi~n~~~~~~--~~------------~~~~~~~~~~~~~~~~~~~il~~g 204 (371)
T cd04962 139 SIEKSDGVTAVSESLRQETYELFDITKEIEVIPNFVDEDR--FR------------PKPDEALKRRLGAPEGEKVLIHIS 204 (371)
T ss_pred HHhhCCEEEEcCHHHHHHHHHhcCCcCCEEEecCCcCHhh--cC------------CCchHHHHHhcCCCCCCeEEEEec
Confidence 46789999999999887776542 24678888864321 11 122344567888888888777663
Q ss_pred CCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCC--CEEEecCCCcchHHHHHHHcceeEE
Q 024872 115 GSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV--PSILVPGGSSNLKYDAFSASRVALC 192 (261)
Q Consensus 115 GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~--~v~v~~g~~~~~~~~~~~~aDl~i~ 192 (261)
|..+. +..+.++++++++.++ ++.+++++|.+. + .+.+++..++.+. ++.+. |+ .+++.++|+.||++|.
T Consensus 205 --~l~~~-K~~~~li~a~~~l~~~-~~~~l~i~G~g~-~-~~~~~~~~~~~~~~~~v~~~-g~-~~~~~~~~~~~d~~v~ 276 (371)
T cd04962 205 --NFRPV-KRIDDVIRIFAKVRKE-VPARLLLVGDGP-E-RSPAERLARELGLQDDVLFL-GK-QDHVEELLSIADLFLL 276 (371)
T ss_pred --ccccc-cCHHHHHHHHHHHHhc-CCceEEEEcCCc-C-HHHHHHHHHHcCCCceEEEe-cC-cccHHHHHHhcCEEEe
Confidence 44333 4577899999988764 568998887763 3 2445665555543 45555 44 5789999999999999
Q ss_pred ec-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 193 TS-----GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 193 ~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
+| |.+.+|||++|+|+|+ ...+.....+
T Consensus 277 ps~~E~~~~~~~EAma~g~PvI~-s~~~~~~e~i 309 (371)
T cd04962 277 PSEKESFGLAALEAMACGVPVVA-SNAGGIPEVV 309 (371)
T ss_pred CCCcCCCccHHHHHHHcCCCEEE-eCCCCchhhh
Confidence 98 6777899999999886 4555555544
No 28
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.35 E-value=4.2e-11 Score=108.36 Aligned_cols=193 Identities=15% Similarity=0.078 Sum_probs=120.7
Q ss_pred HHhchhhheecCcchHHHHHHcCCC---eEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEc
Q 024872 38 LAAFVDHILCILPNEEAICRLNGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLP 114 (261)
Q Consensus 38 l~~~~d~v~~~~p~e~~~~~~~g~~---~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~ 114 (261)
+.+.+|.+++.++...+.+.+.|.+ +.++.|++..+. +.. . .-+.+.++++++
T Consensus 139 ~~~~~d~ii~~s~~~~~~~~~~~~~~~~i~vi~~g~d~~~--~~~------------~---------~~~~~~~~i~~~- 194 (367)
T cd05844 139 LARRAALFIAVSQFIRDRLLALGFPPEKVHVHPIGVDTAK--FTP------------A---------TPARRPPRILFV- 194 (367)
T ss_pred HHHhcCEEEECCHHHHHHHHHcCCCHHHeEEecCCCCHHh--cCC------------C---------CCCCCCcEEEEE-
Confidence 4667999999999999888876664 556777653221 110 0 012234455554
Q ss_pred CCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCC--CEEEecCCC-cchHHHHHHHcceeE
Q 024872 115 GSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV--PSILVPGGS-SNLKYDAFSASRVAL 191 (261)
Q Consensus 115 GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~--~v~v~~g~~-~~~~~~~~~~aDl~i 191 (261)
|+.. . .++.+.+++++..+.++.++++++++|++. ..+.++...++++. ++.+. |.. .+++.++|+.||+++
T Consensus 195 G~~~-~-~K~~~~li~a~~~l~~~~~~~~l~ivG~g~--~~~~~~~~~~~~~~~~~v~~~-g~~~~~~l~~~~~~ad~~v 269 (367)
T cd05844 195 GRFV-E-KKGPLLLLEAFARLARRVPEVRLVIIGDGP--LLAALEALARALGLGGRVTFL-GAQPHAEVRELMRRARIFL 269 (367)
T ss_pred Eeec-c-ccChHHHHHHHHHHHHhCCCeEEEEEeCch--HHHHHHHHHHHcCCCCeEEEC-CCCCHHHHHHHHHhCCEEE
Confidence 5443 2 345788999999998878899999998653 23446666665432 45555 432 467999999999999
Q ss_pred Eec-----------hHHHHHHHHcCCCEEEEEcCChHHHHHHH----hcccC-Cc----cchhhhhcCCCC-------cc
Q 024872 192 CTS-----------GTVAVELQLARLPCVVAYRAHFLTEWFIR----YKAKI-PY----ISLPNILLDSPI-------IP 244 (261)
Q Consensus 192 ~~S-----------Gt~tlEa~~~G~P~Vv~~~~~~~~~~ia~----~~~~~-~~----~~l~Nil~~~~i-------~p 244 (261)
.+| |.+.+|||++|+|+|+ .+.+...+.+.. .++.. .. -.+-+++.+++. ..
T Consensus 270 ~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~-s~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~a~ 348 (367)
T cd05844 270 QPSVTAPSGDAEGLPVVLLEAQASGVPVVA-TRHGGIPEAVEDGETGLLVPEGDVAALAAALGRLLADPDLRARMGAAGR 348 (367)
T ss_pred ECcccCCCCCccCCchHHHHHHHcCCCEEE-eCCCCchhheecCCeeEEECCCCHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 877 5566799999999986 455555544421 11211 11 112334444332 23
Q ss_pred cccCCCCCHHHHHHHh
Q 024872 245 EALLQACTPDTLTHLL 260 (261)
Q Consensus 245 E~lq~~~~~~~i~~~~ 260 (261)
+.+++.++++++++.+
T Consensus 349 ~~~~~~~s~~~~~~~l 364 (367)
T cd05844 349 RRVEERFDLRRQTAKL 364 (367)
T ss_pred HHHHHHCCHHHHHHHH
Confidence 4456678888777664
No 29
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.33 E-value=2.2e-11 Score=115.30 Aligned_cols=175 Identities=15% Similarity=0.146 Sum_probs=112.9
Q ss_pred HHhchhhheecCcchHHHHHHc-------------CCCeEEEcCCCccchhhhcCCCCC------CCccc-ccCCCcHHH
Q 024872 38 LAAFVDHILCILPNEEAICRLN-------------GLAATFVGHPVVEDCLELNLGKGP------EPCEL-KMEGNSEDF 97 (261)
Q Consensus 38 l~~~~d~v~~~~p~e~~~~~~~-------------g~~~~~vG~P~~d~~~~~~~~~~~------~~~~~-~~~~~~~~~ 97 (261)
..+.+|.+++.++...+.+... ..++..+-|.+..+. +++..+. ....+ .....+..+
T Consensus 194 ~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGid~~~--~~p~~~~~~~~~~~~~~~~~k~~~k~~l 271 (466)
T PRK00654 194 GLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGIDYDI--WNPETDPLLAANYSADDLEGKAENKRAL 271 (466)
T ss_pred HHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCCCccc--cCCccCcccccccChhhhhchHHHHHHH
Confidence 3678999999999876655431 123455555554221 2211000 00000 000124567
Q ss_pred HhhcCCCC-CCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCC
Q 024872 98 KNKYSVPS-GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGS 176 (261)
Q Consensus 98 r~~l~l~~-~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~ 176 (261)
++++|+++ +.++|+++ ||..+.| ..+.++++++++.++ +++++++|++...+.+.++++.++++.++.+..++.
T Consensus 272 ~~~~gl~~~~~~~i~~v--GRl~~~K-G~~~li~a~~~l~~~--~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~ 346 (466)
T PRK00654 272 QERFGLPDDDAPLFAMV--SRLTEQK-GLDLVLEALPELLEQ--GGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYD 346 (466)
T ss_pred HHHhCCCCCCCcEEEEe--ecccccc-ChHHHHHHHHHHHhc--CCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 88999985 56777766 5665544 578899999998753 799999987644445566776666665565555652
Q ss_pred cchHHHHHHHcceeEEec-----hHHHHHHHHcCCCEEEEEcCChHHHH
Q 024872 177 SNLKYDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEW 220 (261)
Q Consensus 177 ~~~~~~~~~~aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~ 220 (261)
.+....+|++||+++.+| |.+.+|||++|+|+|+ ..++++.+.
T Consensus 347 ~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~-~~~gG~~e~ 394 (466)
T PRK00654 347 EALAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIV-RRTGGLADT 394 (466)
T ss_pred HHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEE-eCCCCccce
Confidence 234678999999999998 7888899999999986 555555443
No 30
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.33 E-value=2e-11 Score=113.97 Aligned_cols=188 Identities=12% Similarity=0.079 Sum_probs=114.6
Q ss_pred hhhcCCCCeEEEEe--C---CccccccCCcchHHHHHhchhhheecCcchHHHHHHcCCC--eEEEcCCCccchhhhcCC
Q 024872 8 SHERLNGPAHFHYV--A---PSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLA--ATFVGHPVVEDCLELNLG 80 (261)
Q Consensus 8 ~~~~~~ip~~~~yv--~---p~~waw~~g~~r~~~l~~~~d~v~~~~p~e~~~~~~~g~~--~~~vG~P~~d~~~~~~~~ 80 (261)
+++. |+|+++..- + ..-|.|.. +..+.+.+.+|.+++.++...+.+.+.|++ +.++||.-.|.... ..
T Consensus 143 ~~~~-~ip~vl~~~~~~~~s~~~~~~~~--~~~r~~~~~~d~ii~~S~~~~~~l~~~g~~~~i~vi~n~~~d~~~~-~~- 217 (425)
T PRK05749 143 LKRR-GIPLVLANARLSERSFKRYQKFK--RFYRLLFKNIDLVLAQSEEDAERFLALGAKNEVTVTGNLKFDIEVP-PE- 217 (425)
T ss_pred HHHC-CCCEEEEeccCChhhHHHHHHHH--HHHHHHHHhCCEEEECCHHHHHHHHHcCCCCCcEecccccccCCCC-hh-
Confidence 4555 999975421 1 11222221 123445667999999999999999888864 56788853332210 00
Q ss_pred CCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHH
Q 024872 81 KGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITG 160 (261)
Q Consensus 81 ~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~ 160 (261)
.......++++++ +++++++ ++|....+ ...+++|++++.++.|++++++++.+. ...+.+++
T Consensus 218 ---------~~~~~~~~r~~~~--~~~~vil-~~~~~~~~----~~~ll~A~~~l~~~~~~~~liivG~g~-~r~~~l~~ 280 (425)
T PRK05749 218 ---------LAARAATLRRQLA--PNRPVWI-AASTHEGE----EELVLDAHRALLKQFPNLLLILVPRHP-ERFKEVEE 280 (425)
T ss_pred ---------hHHHHHHHHHHhc--CCCcEEE-EeCCCchH----HHHHHHHHHHHHHhCCCcEEEEcCCCh-hhHHHHHH
Confidence 0011345566676 4566664 44444322 356899999988778999999987653 22234666
Q ss_pred HHhcCCCCE-E-------------EecCCCcchHHHHHHHcceeEE-ec-----hHHHHHHHHcCCCEEEEEcCChHH
Q 024872 161 LIQKWPVPS-I-------------LVPGGSSNLKYDAFSASRVALC-TS-----GTVAVELQLARLPCVVAYRAHFLT 218 (261)
Q Consensus 161 ~~~~~~~~v-~-------------v~~g~~~~~~~~~~~~aDl~i~-~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~ 218 (261)
.+++.+... . ++.+. .+++.++|+.||+++. .| |.+.+|+|++|+|+|.....+...
T Consensus 281 ~~~~~gl~~~~~~~~~~~~~~~~v~l~~~-~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~ 357 (425)
T PRK05749 281 LLKKAGLSYVRRSQGEPPSADTDVLLGDT-MGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFK 357 (425)
T ss_pred HHHhCCCcEEEccCCCCCCCCCcEEEEec-HHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHH
Confidence 666554421 1 11121 4589999999999655 33 456679999999998754434333
No 31
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.32 E-value=8.8e-11 Score=111.11 Aligned_cols=158 Identities=17% Similarity=0.183 Sum_probs=103.9
Q ss_pred HHhchhhheecCcchHHHHHHcCC----CeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcC-CCCCCcEEEE
Q 024872 38 LAAFVDHILCILPNEEAICRLNGL----AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYS-VPSGATVISL 112 (261)
Q Consensus 38 l~~~~d~v~~~~p~e~~~~~~~g~----~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~-l~~~~~vIll 112 (261)
+.+.+|.+++.++...+.+.+.+. ++.++.|++.... |.+ .......++++. .++++++|+.
T Consensus 202 ~~~~ad~ii~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~~~--f~p-----------~~~~~~~~~~~~~~~~~~~~i~~ 268 (465)
T PLN02871 202 LHRAADLTLVTSPALGKELEAAGVTAANRIRVWNKGVDSES--FHP-----------RFRSEEMRARLSGGEPEKPLIVY 268 (465)
T ss_pred HHhhCCEEEECCHHHHHHHHHcCCCCcCeEEEeCCccCccc--cCC-----------ccccHHHHHHhcCCCCCCeEEEE
Confidence 467799999999999888877652 3567777765321 211 112234455553 3345666655
Q ss_pred EcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCC-cchHHHHHHHcceeE
Q 024872 113 LPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGS-SNLKYDAFSASRVAL 191 (261)
Q Consensus 113 l~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~-~~~~~~~~~~aDl~i 191 (261)
+ |+.+. .++++.++++++++ ++++++++|++. ..+.+++..++. ++.+. |+. .+++.++|+.||++|
T Consensus 269 v-Grl~~--~K~~~~li~a~~~~----~~~~l~ivG~G~--~~~~l~~~~~~~--~V~f~-G~v~~~ev~~~~~~aDv~V 336 (465)
T PLN02871 269 V-GRLGA--EKNLDFLKRVMERL----PGARLAFVGDGP--YREELEKMFAGT--PTVFT-GMLQGDELSQAYASGDVFV 336 (465)
T ss_pred e-CCCch--hhhHHHHHHHHHhC----CCcEEEEEeCCh--HHHHHHHHhccC--CeEEe-ccCCHHHHHHHHHHCCEEE
Confidence 4 65553 34466677766554 689999998763 345566666543 46655 543 368999999999999
Q ss_pred Eec-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 192 CTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 192 ~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
.+| |.+.+|+|++|+|+|. ...++..+.+
T Consensus 337 ~pS~~E~~g~~vlEAmA~G~PVI~-s~~gg~~eiv 370 (465)
T PLN02871 337 MPSESETLGFVVLEAMASGVPVVA-ARAGGIPDII 370 (465)
T ss_pred ECCcccccCcHHHHHHHcCCCEEE-cCCCCcHhhh
Confidence 998 4566799999999986 4445555444
No 32
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.31 E-value=2e-10 Score=101.81 Aligned_cols=165 Identities=15% Similarity=0.157 Sum_probs=111.0
Q ss_pred HHhchhhheecCcchHHHHHHcCCC---eEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEc
Q 024872 38 LAAFVDHILCILPNEEAICRLNGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLP 114 (261)
Q Consensus 38 l~~~~d~v~~~~p~e~~~~~~~g~~---~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~ 114 (261)
+.+.+|.+++.++...+.+.+.|.+ +.++.|++.... +.. ........+++++++++.++++.+
T Consensus 133 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~vi~~~~~~~~--~~~----------~~~~~~~~~~~~~~~~~~~~i~~~- 199 (365)
T cd03807 133 LSSFIPLIVANSAAAAEYHQAIGYPPKKIVVIPNGVDTER--FSP----------DLDARARLREELGLPEDTFLIGIV- 199 (365)
T ss_pred hccccCeEEeccHHHHHHHHHcCCChhheeEeCCCcCHHh--cCC----------cccchHHHHHhcCCCCCCeEEEEe-
Confidence 3556888888888888888775553 567777754221 111 112234566788998877776655
Q ss_pred CCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHh-cCCC--CEEEecCCCcchHHHHHHHcceeE
Q 024872 115 GSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQ-KWPV--PSILVPGGSSNLKYDAFSASRVAL 191 (261)
Q Consensus 115 GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~-~~~~--~v~v~~g~~~~~~~~~~~~aDl~i 191 (261)
|+ ... .+..+.++++++.+.++.++++++++|.+... +..+.... +.+. ++.+. |. .+++.++|+.||+++
T Consensus 200 G~-~~~-~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~--~~~~~~~~~~~~~~~~v~~~-g~-~~~~~~~~~~adi~v 273 (365)
T cd03807 200 AR-LHP-QKDHATLLRAAALLLKKFPNARLLLVGDGPDR--ANLELLALKELGLEDKVILL-GE-RSDVPALLNALDVFV 273 (365)
T ss_pred cc-cch-hcCHHHHHHHHHHHHHhCCCeEEEEecCCcch--hHHHHHHHHhcCCCceEEEc-cc-cccHHHHHHhCCEEE
Confidence 33 333 34578899999999877889999998865432 22333333 3333 34544 43 568999999999999
Q ss_pred Eec-----hHHHHHHHHcCCCEEEEEcCChHHHHHH
Q 024872 192 CTS-----GTVAVELQLARLPCVVAYRAHFLTEWFI 222 (261)
Q Consensus 192 ~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~ia 222 (261)
.+| |.+.+|||++|+|+|+ .+.+...+.+.
T Consensus 274 ~ps~~e~~~~~~~Ea~a~g~PvI~-~~~~~~~e~~~ 308 (365)
T cd03807 274 LSSLSEGFPNVLLEAMACGLPVVA-TDVGDNAELVG 308 (365)
T ss_pred eCCccccCCcHHHHHHhcCCCEEE-cCCCChHHHhh
Confidence 988 3466799999999886 56666665554
No 33
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.30 E-value=1.8e-10 Score=102.68 Aligned_cols=163 Identities=17% Similarity=0.191 Sum_probs=110.2
Q ss_pred HHhchhhheecCcchHHHHHHcCCC--eEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcC
Q 024872 38 LAAFVDHILCILPNEEAICRLNGLA--ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPG 115 (261)
Q Consensus 38 l~~~~d~v~~~~p~e~~~~~~~g~~--~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~G 115 (261)
+.+.+|.+++.++...+.+.+.+.+ +.++.|++..... . .......+++++++++.++|+. .|
T Consensus 145 ~~~~~d~i~~~s~~~~~~~~~~~~~~~~~vi~~~~~~~~~--~------------~~~~~~~~~~~~~~~~~~~i~~-~G 209 (374)
T cd03817 145 FYNRCDAVIAPSEKIADLLREYGVKRPIEVIPTGIDLDRF--E------------PVDGDDERRKLGIPEDEPVLLY-VG 209 (374)
T ss_pred HhhhCCEEEeccHHHHHHHHhcCCCCceEEcCCccchhcc--C------------ccchhHHHHhcCCCCCCeEEEE-Ee
Confidence 4567999999999988888877654 4666766543221 1 1122333566777766666654 45
Q ss_pred CcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCC--CEEEecCCC-cchHHHHHHHcceeEE
Q 024872 116 SRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV--PSILVPGGS-SNLKYDAFSASRVALC 192 (261)
Q Consensus 116 SR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~--~v~v~~g~~-~~~~~~~~~~aDl~i~ 192 (261)
+... .+..+.++++++++.++.++++++++|++. ..+.+++..++.+. ++.+. |++ .+++.++|+.||+++.
T Consensus 210 ~~~~--~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~v~~~-g~~~~~~~~~~~~~ad~~l~ 284 (374)
T cd03817 210 RLAK--EKNIDFLIRAFARLLKEEPDVKLVIVGDGP--EREELEELARELGLADRVIFT-GFVPREELPDYYKAADLFVF 284 (374)
T ss_pred eeec--ccCHHHHHHHHHHHHHhCCCeEEEEEeCCc--hHHHHHHHHHHcCCCCcEEEe-ccCChHHHHHHHHHcCEEEe
Confidence 5442 345778999999988777889999998753 23445555544332 45555 332 4689999999999999
Q ss_pred ec-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 193 TS-----GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 193 ~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
+| |.+.+|+|++|+|+|+ .+.+.....+
T Consensus 285 ~s~~e~~~~~~~Ea~~~g~PvI~-~~~~~~~~~i 317 (374)
T cd03817 285 ASTTETQGLVLLEAMAAGLPVVA-VDAPGLPDLV 317 (374)
T ss_pred cccccCcChHHHHHHHcCCcEEE-eCCCChhhhe
Confidence 88 4566699999999986 5555555544
No 34
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.30 E-value=5.5e-11 Score=112.91 Aligned_cols=157 Identities=13% Similarity=0.136 Sum_probs=109.5
Q ss_pred HhchhhheecCcchHHHHHHcCCC---eEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcC
Q 024872 39 AAFVDHILCILPNEEAICRLNGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPG 115 (261)
Q Consensus 39 ~~~~d~v~~~~p~e~~~~~~~g~~---~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~G 115 (261)
.+.+|.+++.++...+.+.+.|.+ +.++.|++.... +.. . .. .+.+.+.++|+.. |
T Consensus 242 ~~~ad~Ii~~s~~~~~~~~~~g~~~~ki~vIpNgid~~~--f~~------------~-~~-----~~~~~~~~~i~~v-G 300 (475)
T cd03813 242 YQAADRITTLYEGNRERQIEDGADPEKIRVIPNGIDPER--FAP------------A-RR-----ARPEKEPPVVGLI-G 300 (475)
T ss_pred HHhCCEEEecCHHHHHHHHHcCCCHHHeEEeCCCcCHHH--cCC------------c-cc-----cccCCCCcEEEEE-e
Confidence 467999999999888877777764 677888765321 111 0 00 0123455666665 3
Q ss_pred CcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCC--cchHHHHHHHHhcCCC--CEEEecCCCcchHHHHHHHcceeE
Q 024872 116 SRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPN--RHVENYITGLIQKWPV--PSILVPGGSSNLKYDAFSASRVAL 191 (261)
Q Consensus 116 SR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~--~~~~~~l~~~~~~~~~--~v~v~~g~~~~~~~~~~~~aDl~i 191 (261)
|....| ..+.++++++.+.++.|+++++++|++. ..+.+.+++++++++. ++.+. | .+++.++|+.||+++
T Consensus 301 -rl~~~K-g~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~-G--~~~v~~~l~~aDv~v 375 (475)
T cd03813 301 -RVVPIK-DIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFT-G--FQNVKEYLPKLDVLV 375 (475)
T ss_pred -cccccc-CHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEc-C--CccHHHHHHhCCEEE
Confidence 444444 4678999999998888999999998752 2344455666666554 46665 4 468999999999999
Q ss_pred Eec-----hHHHHHHHHcCCCEEEEEcCChHHHHHH
Q 024872 192 CTS-----GTVAVELQLARLPCVVAYRAHFLTEWFI 222 (261)
Q Consensus 192 ~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~ia 222 (261)
.+| |.+.+|||++|+|+|. .+.++..+.+.
T Consensus 376 lpS~~Eg~p~~vlEAma~G~PVVa-td~g~~~elv~ 410 (475)
T cd03813 376 LTSISEGQPLVILEAMAAGIPVVA-TDVGSCRELIE 410 (475)
T ss_pred eCchhhcCChHHHHHHHcCCCEEE-CCCCChHHHhc
Confidence 998 6677899999999886 56666665553
No 35
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.29 E-value=1.9e-10 Score=102.40 Aligned_cols=164 Identities=16% Similarity=0.138 Sum_probs=106.0
Q ss_pred HhchhhheecCcchHHHHHHcC--CCeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCC
Q 024872 39 AAFVDHILCILPNEEAICRLNG--LAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGS 116 (261)
Q Consensus 39 ~~~~d~v~~~~p~e~~~~~~~g--~~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GS 116 (261)
.+.+|.+++........+...+ .++.++.|++..... .. ......++.++.+.++++++.+|
T Consensus 147 ~~~~~~i~~~s~~~~~~~~~~~~~~~~~vi~~~~~~~~~--~~------------~~~~~~~~~~~~~~~~~~i~~~G-- 210 (375)
T cd03821 147 LQAAAAVHATSEQEAAEIRRLGLKAPIAVIPNGVDIPPF--AA------------LPSRGRRRKFPILPDKRIILFLG-- 210 (375)
T ss_pred HhcCCEEEECCHHHHHHHHhhCCcccEEEcCCCcChhcc--Cc------------chhhhhhhhccCCCCCcEEEEEe--
Confidence 4456777777765555544432 346777777643211 10 11111156677777888887763
Q ss_pred cHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCC--CEEEecCCC-cchHHHHHHHcceeEEe
Q 024872 117 RLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV--PSILVPGGS-SNLKYDAFSASRVALCT 193 (261)
Q Consensus 117 R~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~--~v~v~~g~~-~~~~~~~~~~aDl~i~~ 193 (261)
|..+. +..+.++++++++.++.++++++++|.+.......++...++.+. ++.+. |+. .+++.++|+.||+++.+
T Consensus 211 ~~~~~-K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~-g~~~~~~~~~~~~~adv~v~p 288 (375)
T cd03821 211 RLHPK-KGLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFT-GMLYGEDKAAALADADLFVLP 288 (375)
T ss_pred Ccchh-cCHHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEc-CCCChHHHHHHHhhCCEEEec
Confidence 33333 457889999999988788999999987544443444443344333 45554 443 35899999999999999
Q ss_pred c-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 194 S-----GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 194 S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
| |.+.+|||++|+|+|+ .+.++....+
T Consensus 289 s~~e~~~~~~~Eama~G~PvI~-~~~~~~~~~~ 320 (375)
T cd03821 289 SHSENFGIVVAEALACGTPVVT-TDKVPWQELI 320 (375)
T ss_pred cccCCCCcHHHHHHhcCCCEEE-cCCCCHHHHh
Confidence 8 6677799999999986 5555555544
No 36
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.29 E-value=3.2e-10 Score=100.47 Aligned_cols=193 Identities=15% Similarity=0.138 Sum_probs=119.7
Q ss_pred hhhcCCCCeEEEEeCCccccccCC---cchHHHHHhchhhheecCcchHHHHHHc---CCCeEEEcCCCccchhhhcCCC
Q 024872 8 SHERLNGPAHFHYVAPSFWAWKGG---EARLKNLAAFVDHILCILPNEEAICRLN---GLAATFVGHPVVEDCLELNLGK 81 (261)
Q Consensus 8 ~~~~~~ip~~~~yv~p~~waw~~g---~~r~~~l~~~~d~v~~~~p~e~~~~~~~---g~~~~~vG~P~~d~~~~~~~~~ 81 (261)
.++..++|+++++-.+..+.+... +...+.+.+.+|.+++.++...+.+.+. +.++.+++|++..... .
T Consensus 112 ~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~--- 186 (377)
T cd03798 112 LKRKLGIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSEALADELKALGIDPEKVTVIPNGVDTERF--S--- 186 (377)
T ss_pred HHHhcCCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCHHHHHHHHHhcCCCCceEEcCCCcCcccC--C---
Confidence 333348898654422222222110 1122335667999999999999888764 3457888888754321 1
Q ss_pred CCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHH
Q 024872 82 GPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGL 161 (261)
Q Consensus 82 ~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~ 161 (261)
+...... .+++.+.+..+++.+ |+... .+....++++++.+.++.+++++++.|.+.. .+.+++.
T Consensus 187 ---------~~~~~~~-~~~~~~~~~~~i~~~-g~~~~--~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~--~~~~~~~ 251 (377)
T cd03798 187 ---------PADRAEA-RKLGLPEDKKVILFV-GRLVP--RKGIDYLIEALARLLKKRPDVHLVIVGDGPL--REALEAL 251 (377)
T ss_pred ---------CcchHHH-HhccCCCCceEEEEe-ccCcc--ccCHHHHHHHHHHHHhcCCCeEEEEEcCCcc--hHHHHHH
Confidence 0111111 334555566666655 44332 3456789999999987778899998876532 2445555
Q ss_pred HhcCCC--CEEEecCCC-cchHHHHHHHcceeEEec-----hHHHHHHHHcCCCEEEEEcCChHHHHHH
Q 024872 162 IQKWPV--PSILVPGGS-SNLKYDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWFI 222 (261)
Q Consensus 162 ~~~~~~--~v~v~~g~~-~~~~~~~~~~aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~ia 222 (261)
.++.+. ++.+. |++ .+++.++|+.||+++.+| |+..+|++++|+|+|+ .+.+...+.+.
T Consensus 252 ~~~~~~~~~v~~~-g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~-~~~~~~~~~~~ 318 (377)
T cd03798 252 AAELGLEDRVTFL-GAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVA-TDVGGIPEIIT 318 (377)
T ss_pred HHhcCCcceEEEe-CCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEE-ecCCChHHHhc
Confidence 554332 45554 433 457899999999999887 5667799999999885 56666665553
No 37
>PLN02275 transferase, transferring glycosyl groups
Probab=99.28 E-value=1.2e-10 Score=107.05 Aligned_cols=190 Identities=9% Similarity=0.026 Sum_probs=115.3
Q ss_pred cccchhhhcCCCCeEEEEeCCcccccc------CC------cchHHH-HHhchhhheecCcchHHHHHH-cCCCeEEEcC
Q 024872 3 FAARYSHERLNGPAHFHYVAPSFWAWK------GG------EARLKN-LAAFVDHILCILPNEEAICRL-NGLAATFVGH 68 (261)
Q Consensus 3 ~~~~~~~~~~~ip~~~~yv~p~~waw~------~g------~~r~~~-l~~~~d~v~~~~p~e~~~~~~-~g~~~~~vG~ 68 (261)
++|+.+++..++|+++. ++ ..|... .+ .++..+ +.+.+|.+++.++...+.+.+ .|+++.++-|
T Consensus 116 ~~~~~~~~~~~~p~v~~-~h-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~~S~~~~~~l~~~~g~~i~vi~n 193 (371)
T PLN02275 116 AVVKLACWLRRAKFVID-WH-NFGYTLLALSLGRSHPLVRLYRWYERHYGKMADGHLCVTKAMQHELDQNWGIRATVLYD 193 (371)
T ss_pred HHHHHHHHHhCCCEEEE-cC-CccHHHHhcccCCCCHHHHHHHHHHHHHHhhCCEEEECCHHHHHHHHHhcCCCeEEECC
Confidence 45677776668999643 22 223110 00 012233 366799999999998888865 4777666656
Q ss_pred CCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHh------------
Q 024872 69 PVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLK------------ 136 (261)
Q Consensus 69 P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~------------ 136 (261)
...+. |.+ .... ..+..+.+.+++..| |..+. +..+.+++|+..+.
T Consensus 194 ~~~~~---f~~------------~~~~-----~~~~~~~~~~i~~~g-rl~~~-k~~~~li~a~~~l~~~~~~~~~~~~~ 251 (371)
T PLN02275 194 QPPEF---FRP------------ASLE-----IRLRPNRPALVVSST-SWTPD-EDFGILLEAAVMYDRRVAARLNESDS 251 (371)
T ss_pred CCHHH---cCc------------CCch-----hcccCCCcEEEEEeC-ceecc-CCHHHHHHHHHHHHhhhhhccccccc
Confidence 53222 211 1111 112223444444433 44333 44678888888774
Q ss_pred -----hhCCCeEEEEEeCCCcchHHHHHHHHhcCCC-CEEEecCCC-cchHHHHHHHcceeEEec--------hHHHHHH
Q 024872 137 -----DSFPELITVIHVAPNRHVENYITGLIQKWPV-PSILVPGGS-SNLKYDAFSASRVALCTS--------GTVAVEL 201 (261)
Q Consensus 137 -----~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~-~v~v~~g~~-~~~~~~~~~~aDl~i~~S--------Gt~tlEa 201 (261)
+..|+++|+++|++. . ++.+++.+++++. ++.++.++. .++++++|++||++++++ |.+.+|+
T Consensus 252 ~~~~~~~~~~i~l~ivG~G~-~-~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEA 329 (371)
T PLN02275 252 ASGKQSLYPRLLFIITGKGP-Q-KAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDM 329 (371)
T ss_pred cccccccCCCeEEEEEeCCC-C-HHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHH
Confidence 235789999999874 2 3557777776654 355555432 578999999999999632 3466799
Q ss_pred HHcCCCEEEEEcCChHHH
Q 024872 202 QLARLPCVVAYRAHFLTE 219 (261)
Q Consensus 202 ~~~G~P~Vv~~~~~~~~~ 219 (261)
|++|+|+|. ...++..+
T Consensus 330 mA~G~PVVa-~~~gg~~e 346 (371)
T PLN02275 330 FGCGLPVCA-VSYSCIGE 346 (371)
T ss_pred HHCCCCEEE-ecCCChHH
Confidence 999999986 44555443
No 38
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.28 E-value=1.2e-10 Score=106.55 Aligned_cols=124 Identities=15% Similarity=0.007 Sum_probs=87.0
Q ss_pred cHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcc---hHHHHHHHHhcC--CCC
Q 024872 94 SEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRH---VENYITGLIQKW--PVP 168 (261)
Q Consensus 94 ~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~---~~~~l~~~~~~~--~~~ 168 (261)
+...++++|+++++++|+.+ +|.... ++.+.++++++.+.+..|+++++++|++... ..+.+++..+.. ..+
T Consensus 177 ~~~~~~~~~~~~~~~~i~~v--grl~~~-Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~ 253 (372)
T cd03792 177 IEYILEKYGIDPERPYITQV--SRFDPW-KDPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPD 253 (372)
T ss_pred HHHHHHHhCCCCCCcEEEEE--eccccc-cCcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCC
Confidence 34667889999898888876 566544 4578899999999877789999999876321 122233333222 224
Q ss_pred EEEecCC--CcchHHHHHHHcceeEEec-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 169 SILVPGG--SSNLKYDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 169 v~v~~g~--~~~~~~~~~~~aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
+.++... ..+++.++|++||+++.+| |.+.+|||++|+|+|+ ...++....+
T Consensus 254 v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~-s~~~~~~~~i 312 (372)
T cd03792 254 IHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIA-GPVGGIPLQI 312 (372)
T ss_pred eEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEE-cCCCCchhhc
Confidence 5555322 1367899999999999998 6788899999999886 5555555544
No 39
>PRK14098 glycogen synthase; Provisional
Probab=99.26 E-value=1.5e-10 Score=110.40 Aligned_cols=171 Identities=12% Similarity=0.080 Sum_probs=111.3
Q ss_pred HhchhhheecCcchHHHHHHc-----CC---------CeEEEcCCCccchhhhcCCCCCC--Ccc----cc-cCCCcHHH
Q 024872 39 AAFVDHILCILPNEEAICRLN-----GL---------AATFVGHPVVEDCLELNLGKGPE--PCE----LK-MEGNSEDF 97 (261)
Q Consensus 39 ~~~~d~v~~~~p~e~~~~~~~-----g~---------~~~~vG~P~~d~~~~~~~~~~~~--~~~----~~-~~~~~~~~ 97 (261)
.+++|.|++++|.-.+.++.. |+ ++..+-|.+..+. +++..+.. ..+ +. ....+..+
T Consensus 218 i~~ad~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~--~~p~~d~~~~~~~~~~~~~~k~~~k~~l 295 (489)
T PRK14098 218 VEHADLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQ--WNPSTDKLIKKRYSIERLDGKLENKKAL 295 (489)
T ss_pred HHhcCcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccc--cCCcccccccccCCcchhhhHHHHHHHH
Confidence 567999999999877666431 22 3445555553221 22211100 000 00 00124567
Q ss_pred HhhcCCCC--CCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCC
Q 024872 98 KNKYSVPS--GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGG 175 (261)
Q Consensus 98 r~~l~l~~--~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~ 175 (261)
++++|++. +.++|++. ||..+.| ..+.++++++++.+ ++++|+++|++...+++.++++.++++.++.+..++
T Consensus 296 ~~~lgl~~~~~~~~i~~v--gRl~~~K-G~d~li~a~~~l~~--~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~ 370 (489)
T PRK14098 296 LEEVGLPFDEETPLVGVI--INFDDFQ-GAELLAESLEKLVE--LDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEF 370 (489)
T ss_pred HHHhCCCCccCCCEEEEe--ccccccC-cHHHHHHHHHHHHh--cCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEec
Confidence 78899974 45677765 5665544 57889999999875 479999998764434556777766665567666544
Q ss_pred CcchHHHHHHHcceeEEec-----hHHHHHHHHcCCCEEEEEcCChH
Q 024872 176 SSNLKYDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHFL 217 (261)
Q Consensus 176 ~~~~~~~~~~~aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~ 217 (261)
..+++..+|++||+++.+| |.+.+|||++|+|.|+ ..++++
T Consensus 371 ~~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv-~~~GGl 416 (489)
T PRK14098 371 TDAFFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVA-YAGGGI 416 (489)
T ss_pred CHHHHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEE-ecCCCC
Confidence 3445789999999999999 7888899999999886 455444
No 40
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.25 E-value=4.2e-10 Score=98.94 Aligned_cols=185 Identities=14% Similarity=0.077 Sum_probs=118.0
Q ss_pred CCCeEEEEeCCccccccCCcch----HHHHHhchhhheecCcchHHHHHHcC----CCeEEEcCCCccchhhhcCCCCCC
Q 024872 13 NGPAHFHYVAPSFWAWKGGEAR----LKNLAAFVDHILCILPNEEAICRLNG----LAATFVGHPVVEDCLELNLGKGPE 84 (261)
Q Consensus 13 ~ip~~~~yv~p~~waw~~g~~r----~~~l~~~~d~v~~~~p~e~~~~~~~g----~~~~~vG~P~~d~~~~~~~~~~~~ 84 (261)
++|++ ++++...+.+...... ...+.+.+|.+++.++...+.+.+.+ .++.++.||+...... .
T Consensus 104 ~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~--~----- 175 (353)
T cd03811 104 GTKLI-VWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPDKIEVIYNPIDIEEIR--A----- 175 (353)
T ss_pred CCceE-EEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhhHHHhhcCCccccEEecCCcChhhcC--c-----
Confidence 68885 4444443332221111 23356779999999999988876543 2477889987643221 0
Q ss_pred CcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhc
Q 024872 85 PCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQK 164 (261)
Q Consensus 85 ~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~ 164 (261)
..... ..++.+.+..+++.+ |+.. + .+..+.++++++.+.+..++++++++|.+. . .+.+++.+++
T Consensus 176 -------~~~~~--~~~~~~~~~~~i~~~-g~~~-~-~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~-~-~~~~~~~~~~ 241 (353)
T cd03811 176 -------LAEEP--LELGIPPDGPVILAV-GRLS-P-QKGFDTLIRAFALLRKEGPDARLVILGDGP-L-REELEALAKE 241 (353)
T ss_pred -------ccchh--hhcCCCCCceEEEEE-ecch-h-hcChHHHHHHHHHhhhcCCCceEEEEcCCc-c-HHHHHHHHHh
Confidence 01111 024455555555554 4433 3 345778999999998777889999988653 2 2344555555
Q ss_pred CCC--CEEEecCCCcchHHHHHHHcceeEEec-----hHHHHHHHHcCCCEEEEEcCChHHHHHH
Q 024872 165 WPV--PSILVPGGSSNLKYDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWFI 222 (261)
Q Consensus 165 ~~~--~v~v~~g~~~~~~~~~~~~aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~ia 222 (261)
.+. ++.+. |. .+++.++|+.||++|.+| |++.+|||++|+|+|+ .+.++..+.+.
T Consensus 242 ~~~~~~v~~~-g~-~~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~-~~~~~~~e~i~ 303 (353)
T cd03811 242 LGLADRVHFL-GF-QSNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVA-TDCPGPREILE 303 (353)
T ss_pred cCCCccEEEe-cc-cCCHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEE-cCCCChHHHhc
Confidence 443 35554 44 568999999999999988 6677799999999886 55556666553
No 41
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.25 E-value=3.6e-10 Score=101.41 Aligned_cols=161 Identities=17% Similarity=0.124 Sum_probs=107.8
Q ss_pred HhchhhheecCcchHHHHHHcC-C---CeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEc
Q 024872 39 AAFVDHILCILPNEEAICRLNG-L---AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLP 114 (261)
Q Consensus 39 ~~~~d~v~~~~p~e~~~~~~~g-~---~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~ 114 (261)
.++++.+.+..+...+.+.+.+ . ++.++.|++.... +.. ........++++++++++++++.+|
T Consensus 128 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~i~ng~~~~~--~~~----------~~~~~~~~~~~~~~~~~~~~~l~~g 195 (360)
T cd04951 128 DFLSDLTTNVSKEALDYFIASKAFNANKSFVVYNGIDTDR--FRK----------DPARRLKIRNALGVKNDTFVILAVG 195 (360)
T ss_pred hhccCceEEEcHHHHHHHHhccCCCcccEEEEccccchhh--cCc----------chHHHHHHHHHcCcCCCCEEEEEEe
Confidence 3456677777777777776543 2 3667777653221 110 1112345677889988887777663
Q ss_pred CCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCC--CEEEecCCCcchHHHHHHHcceeEE
Q 024872 115 GSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV--PSILVPGGSSNLKYDAFSASRVALC 192 (261)
Q Consensus 115 GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~--~v~v~~g~~~~~~~~~~~~aDl~i~ 192 (261)
+ .... +..+.++++++++.++.|+++|+++|++. . .+.+++.+++.+. ++.+. |+ .+++.++|+.||+++.
T Consensus 196 ~--~~~~-kg~~~li~a~~~l~~~~~~~~l~i~G~g~-~-~~~~~~~~~~~~~~~~v~~~-g~-~~~~~~~~~~ad~~v~ 268 (360)
T cd04951 196 R--LVEA-KDYPNLLKAFAKLLSDYLDIKLLIAGDGP-L-RATLERLIKALGLSNRVKLL-GL-RDDIAAYYNAADLFVL 268 (360)
T ss_pred e--Cchh-cCcHHHHHHHHHHHhhCCCeEEEEEcCCC-c-HHHHHHHHHhcCCCCcEEEe-cc-cccHHHHHHhhceEEe
Confidence 3 2223 45678999999998777899999998763 2 3445665555433 46665 44 5789999999999999
Q ss_pred ec-----hHHHHHHHHcCCCEEEEEcCChHHH
Q 024872 193 TS-----GTVAVELQLARLPCVVAYRAHFLTE 219 (261)
Q Consensus 193 ~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~ 219 (261)
+| |.+.+|||++|+|+|+ ...+....
T Consensus 269 ~s~~e~~~~~~~Ea~a~G~PvI~-~~~~~~~e 299 (360)
T cd04951 269 SSAWEGFGLVVAEAMACELPVVA-TDAGGVRE 299 (360)
T ss_pred cccccCCChHHHHHHHcCCCEEE-ecCCChhh
Confidence 98 5666699999999986 55554444
No 42
>PLN02316 synthase/transferase
Probab=99.25 E-value=3.2e-10 Score=114.82 Aligned_cols=195 Identities=10% Similarity=0.064 Sum_probs=122.3
Q ss_pred CCCeEEEEeCCccccccCCcchHHHHHhchhhheecCcchHHHHHHcC-C-----CeEEEcCCCccchhhhcCCCCC-CC
Q 024872 13 NGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNG-L-----AATFVGHPVVEDCLELNLGKGP-EP 85 (261)
Q Consensus 13 ~ip~~~~yv~p~~waw~~g~~r~~~l~~~~d~v~~~~p~e~~~~~~~g-~-----~~~~vG~P~~d~~~~~~~~~~~-~~ 85 (261)
++|++ +-++.- +.. .+..+....++|.|++++|...+.+...+ + ++..+-|.+.... |++..+. .+
T Consensus 738 ~~p~V-~TiHnl--~~~--~n~lk~~l~~AD~ViTVS~tya~EI~~~~~l~~~~~Kl~vI~NGID~~~--w~P~tD~~lp 810 (1036)
T PLN02316 738 KARVV-FTIHNL--EFG--ANHIGKAMAYADKATTVSPTYSREVSGNSAIAPHLYKFHGILNGIDPDI--WDPYNDNFIP 810 (1036)
T ss_pred CCCEE-EEeCCc--ccc--hhHHHHHHHHCCEEEeCCHHHHHHHHhccCcccccCCEEEEECCccccc--cCCccccccc
Confidence 58884 444432 221 12445566789999999999776664432 1 3445555553221 2211100 00
Q ss_pred cccc-------cCCCcHHHHhhcCCCC-CCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCC-cchHH
Q 024872 86 CELK-------MEGNSEDFKNKYSVPS-GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPN-RHVEN 156 (261)
Q Consensus 86 ~~~~-------~~~~~~~~r~~l~l~~-~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~-~~~~~ 156 (261)
..+. ....+..+++++|++. +.|+|+++ ||..+.|+ +..+++|+..+.+ .+++|+++|++. ..+++
T Consensus 811 ~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~V--GRL~~qKG-vdlLi~Al~~ll~--~~~qlVIvG~Gpd~~~e~ 885 (1036)
T PLN02316 811 VPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGII--TRLTHQKG-IHLIKHAIWRTLE--RNGQVVLLGSAPDPRIQN 885 (1036)
T ss_pred ccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEE--eccccccC-HHHHHHHHHHHhh--cCcEEEEEeCCCCHHHHH
Confidence 0000 0112456788999984 67888876 78876654 7889999999875 479999988752 22344
Q ss_pred HHHHHHhcCCC----CEEEecCCCcchH-HHHHHHcceeEEec-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 157 YITGLIQKWPV----PSILVPGGSSNLK-YDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 157 ~l~~~~~~~~~----~v~v~~g~~~~~~-~~~~~~aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
.++++.++++. ++.+..++ .+.. +.+|++||+++++| |.+.+|||++|+|.|+ .+++++...+
T Consensus 886 ~l~~La~~Lg~~~~~rV~f~g~~-de~lah~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVv-s~vGGL~DtV 958 (1036)
T PLN02316 886 DFVNLANQLHSSHHDRARLCLTY-DEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVV-RKTGGLFDTV 958 (1036)
T ss_pred HHHHHHHHhCccCCCeEEEEecC-CHHHHHHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEE-EcCCCcHhhc
Confidence 55666664432 35554343 2333 47999999999999 8899999999999886 6787777655
No 43
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.24 E-value=2.9e-10 Score=101.49 Aligned_cols=160 Identities=16% Similarity=0.115 Sum_probs=102.7
Q ss_pred HHHhchhhheecCcchHHHHHHcCCC-eEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcC
Q 024872 37 NLAAFVDHILCILPNEEAICRLNGLA-ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPG 115 (261)
Q Consensus 37 ~l~~~~d~v~~~~p~e~~~~~~~g~~-~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~G 115 (261)
.+.+.+|.+++.++...+.+.+.+.+ +.++++++..... .. .......+++++ +.+.++++ +.|
T Consensus 140 ~~~~~~d~i~~~s~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~-----------~~~~~~~~~~~~-~~~~~~i~-~~G 204 (364)
T cd03814 140 WFHNRADRVLVPSPSLADELRARGFRRVRLWPRGVDTELF--HP-----------RRRDEALRARLG-PPDRPVLL-YVG 204 (364)
T ss_pred HHHHhCCEEEeCCHHHHHHHhccCCCceeecCCCcccccc--Cc-----------ccccHHHHHHhC-CCCCeEEE-EEe
Confidence 35667999999999988877665543 5566666543221 11 111233445555 44445454 445
Q ss_pred CcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEec-
Q 024872 116 SRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTS- 194 (261)
Q Consensus 116 SR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~S- 194 (261)
+.. . .+..+.++++++++.++ ++++++++|++. . .+.++ +...++.+......+++.++|+.||+++.+|
T Consensus 205 ~~~-~-~k~~~~~i~~~~~l~~~-~~~~l~i~G~~~-~-~~~~~----~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~ 275 (364)
T cd03814 205 RLA-P-EKNLEALLDADLPLRRR-PPVRLVIVGDGP-A-RARLE----ARYPNVHFLGFLDGEELAAAYASADVFVFPSR 275 (364)
T ss_pred ccc-c-ccCHHHHHHHHHHhhhc-CCceEEEEeCCc-h-HHHHh----ccCCcEEEEeccCHHHHHHHHHhCCEEEECcc
Confidence 433 2 34577899999999876 889999988653 2 22233 2233566653222568999999999999998
Q ss_pred ----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 195 ----GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 195 ----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
|.+.+|+|++|+|+|. +..+.....+
T Consensus 276 ~e~~~~~~lEa~a~g~PvI~-~~~~~~~~~i 305 (364)
T cd03814 276 TETFGLVVLEAMASGLPVVA-PDAGGPADIV 305 (364)
T ss_pred cccCCcHHHHHHHcCCCEEE-cCCCCchhhh
Confidence 4566699999999885 5555555444
No 44
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.23 E-value=5e-10 Score=104.33 Aligned_cols=158 Identities=17% Similarity=0.061 Sum_probs=108.1
Q ss_pred HHHHhchhhheecCcchHHHHHHcCCC---eEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEE
Q 024872 36 KNLAAFVDHILCILPNEEAICRLNGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISL 112 (261)
Q Consensus 36 ~~l~~~~d~v~~~~p~e~~~~~~~g~~---~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIll 112 (261)
..+.+.+|.+++++++..+.+.+.|++ +.++.|++..+. |.. ..+. .+.+...|+.
T Consensus 169 ~~~~~~ad~vv~~S~~~~~~l~~~g~~~~ki~vi~nGvd~~~--f~~------------~~~~-------~~~~~~~il~ 227 (406)
T PRK15427 169 QQLFRRGDLMLPISDLWAGRLQKMGCPPEKIAVSRMGVDMTR--FSP------------RPVK-------APATPLEIIS 227 (406)
T ss_pred HHHHHhCCEEEECCHHHHHHHHHcCCCHHHEEEcCCCCCHHH--cCC------------Cccc-------cCCCCeEEEE
Confidence 445567999999999988888877764 567777764322 211 0000 0122334554
Q ss_pred EcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCC--CEEEecCCC-cchHHHHHHHcce
Q 024872 113 LPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV--PSILVPGGS-SNLKYDAFSASRV 189 (261)
Q Consensus 113 l~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~--~v~v~~g~~-~~~~~~~~~~aDl 189 (261)
+ +|..+- +..+.++++++.+.++.++++++++|++. .++.+++.+++++. ++.+. |+. .+++.++|+.||+
T Consensus 228 v--Grl~~~-Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~--~~~~l~~~~~~~~l~~~V~~~-G~~~~~el~~~l~~aDv 301 (406)
T PRK15427 228 V--ARLTEK-KGLHVAIEACRQLKEQGVAFRYRILGIGP--WERRLRTLIEQYQLEDVVEMP-GFKPSHEVKAMLDDADV 301 (406)
T ss_pred E--eCcchh-cCHHHHHHHHHHHHhhCCCEEEEEEECch--hHHHHHHHHHHcCCCCeEEEe-CCCCHHHHHHHHHhCCE
Confidence 4 455443 45788999999998777899999998763 34557777776654 35554 543 4689999999999
Q ss_pred eEEec-----------hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 190 ALCTS-----------GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 190 ~i~~S-----------Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
+|.+| |.+.+|||++|+|+|. ...++..+.+
T Consensus 302 ~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~-t~~~g~~E~v 343 (406)
T PRK15427 302 FLLPSVTGADGDMEGIPVALMEAMAVGIPVVS-TLHSGIPELV 343 (406)
T ss_pred EEECCccCCCCCccCccHHHHHHHhCCCCEEE-eCCCCchhhh
Confidence 99987 2456699999999886 5666666655
No 45
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.22 E-value=2.8e-12 Score=104.90 Aligned_cols=97 Identities=15% Similarity=0.225 Sum_probs=64.2
Q ss_pred EEEEEcCCcHHH-HHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHc
Q 024872 109 VISLLPGSRLQE-VARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSAS 187 (261)
Q Consensus 109 vIlll~GSR~~e-i~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~a 187 (261)
+|++++||.++. +++. +.++...+....+++++++++|++ .+.+ ......+.+.++.+++ + .++|.++|+.|
T Consensus 1 tilv~gGs~g~~~l~~~---v~~~~~~~~~~~~~~~viv~~G~~-~~~~-~~~~~~~~~~~v~~~~-~-~~~m~~~m~~a 73 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRL---VLKILELLAEKHKNIQVIVQTGKN-NYEE-LKIKVENFNPNVKVFG-F-VDNMAELMAAA 73 (167)
T ss_dssp -EEEEETTTSHHHHHCC---CCCHHHHHHHHHHHCCCCCCCTTC-ECHH-HCCCHCCTTCCCEEEC-S-SSSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHH---HHHHHHHHhhcCCCcEEEEEECCC-cHHH-HHHHHhccCCcEEEEe-c-hhhHHHHHHHc
Confidence 588999999975 5553 333333443322357899999986 3333 2222333334566664 4 56799999999
Q ss_pred ceeEEechHHHH-HHHHcCCCEEEEE
Q 024872 188 RVALCTSGTVAV-ELQLARLPCVVAY 212 (261)
Q Consensus 188 Dl~i~~SGt~tl-Ea~~~G~P~Vv~~ 212 (261)
|++|+++|+.|+ |++.+|+|+|++.
T Consensus 74 DlvIs~aG~~Ti~E~l~~g~P~I~ip 99 (167)
T PF04101_consen 74 DLVISHAGAGTIAEALALGKPAIVIP 99 (167)
T ss_dssp SEEEECS-CHHHHHHHHCT--EEEE-
T ss_pred CEEEeCCCccHHHHHHHcCCCeeccC
Confidence 999999999888 9999999999874
No 46
>PRK14099 glycogen synthase; Provisional
Probab=99.22 E-value=2.4e-10 Score=108.88 Aligned_cols=175 Identities=15% Similarity=0.096 Sum_probs=111.4
Q ss_pred HHHHhchhhheecCcchHHHHHHc----C---------CCeEEEcCCCccchhhhcCCCCCC-Ccc-----c-ccCCCcH
Q 024872 36 KNLAAFVDHILCILPNEEAICRLN----G---------LAATFVGHPVVEDCLELNLGKGPE-PCE-----L-KMEGNSE 95 (261)
Q Consensus 36 ~~l~~~~d~v~~~~p~e~~~~~~~----g---------~~~~~vG~P~~d~~~~~~~~~~~~-~~~-----~-~~~~~~~ 95 (261)
+...+.+|.|++++|.-.+.++.. | -++..+-|.+..+. |++..+.. +.. + .....+.
T Consensus 204 k~~i~~ad~vitVS~~~a~ei~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~--f~p~~~~~~~~~~~~~~~~~k~~~k~ 281 (485)
T PRK14099 204 KAGLQLADRITTVSPTYALEIQGPEAGMGLDGLLRQRADRLSGILNGIDTAV--WNPATDELIAATYDVETLAARAANKA 281 (485)
T ss_pred HHHHHhcCeeeecChhHHHHHhcccCCcChHHHHHhhCCCeEEEecCCchhh--ccccccchhhhcCChhHHHhHHHhHH
Confidence 445678999999999987766431 1 23555556554321 22211000 000 0 0001245
Q ss_pred HHHhhcCCCC--CCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEec
Q 024872 96 DFKNKYSVPS--GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVP 173 (261)
Q Consensus 96 ~~r~~l~l~~--~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~ 173 (261)
.+++++|++. +.+++++. ||..+.| +++.+++|++++.+ .+++++++|++...+++.++++.++++.++.++.
T Consensus 282 ~l~~~~gl~~~~~~~li~~V--gRL~~~K-G~d~Li~A~~~l~~--~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~ 356 (485)
T PRK14099 282 ALQARFGLDPDPDALLLGVI--SRLSWQK-GLDLLLEALPTLLG--EGAQLALLGSGDAELEARFRAAAQAYPGQIGVVI 356 (485)
T ss_pred HHHHHcCCCcccCCcEEEEE--ecCCccc-cHHHHHHHHHHHHh--cCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEe
Confidence 6788999985 35566555 6665544 57889999998875 3789999987644345556666655544554445
Q ss_pred CCCcchHHHHH-HHcceeEEec-----hHHHHHHHHcCCCEEEEEcCChHHH
Q 024872 174 GGSSNLKYDAF-SASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTE 219 (261)
Q Consensus 174 g~~~~~~~~~~-~~aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~ 219 (261)
|+ .+++..+| ++||+++.+| |.+.+|||++|+|.|+ .+++++.+
T Consensus 357 G~-~~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVv-s~~GGl~d 406 (485)
T PRK14099 357 GY-DEALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVV-ARVGGLAD 406 (485)
T ss_pred CC-CHHHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEE-eCCCCccc
Confidence 66 67888877 5699999999 8888899999988776 45555443
No 47
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.22 E-value=7.6e-10 Score=100.97 Aligned_cols=166 Identities=16% Similarity=0.105 Sum_probs=106.4
Q ss_pred HHhchhhheecCcchHHHHHHcC-C---CeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEE
Q 024872 38 LAAFVDHILCILPNEEAICRLNG-L---AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLL 113 (261)
Q Consensus 38 l~~~~d~v~~~~p~e~~~~~~~g-~---~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll 113 (261)
+.+.+|.+++.++...+.+.+.+ . ++.++.|++.... +.. .......+++++.++++++|+.+
T Consensus 160 ~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~vi~ng~~~~~--~~~-----------~~~~~~~~~~~~~~~~~~~i~~~ 226 (398)
T cd03800 160 LLRAADRVIASTPQEAEELYSLYGAYPRRIRVVPPGVDLER--FTP-----------YGRAEARRARLLRDPDKPRILAV 226 (398)
T ss_pred HHhhCCEEEEcCHHHHHHHHHHccccccccEEECCCCCccc--eec-----------ccchhhHHHhhccCCCCcEEEEE
Confidence 46679999999998877765532 1 2556777654221 111 11112224556667677766654
Q ss_pred cCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcch----HHHHHHHHhcCCC--CEEEecCCC-cchHHHHHHH
Q 024872 114 PGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHV----ENYITGLIQKWPV--PSILVPGGS-SNLKYDAFSA 186 (261)
Q Consensus 114 ~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~----~~~l~~~~~~~~~--~v~v~~g~~-~~~~~~~~~~ 186 (261)
|+ ... .+..+.+++++..+.++.++++++++|++.... ...++...+..+. ++.+. |+. .+++.++++.
T Consensus 227 -gr-~~~-~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-g~~~~~~~~~~~~~ 302 (398)
T cd03800 227 -GR-LDP-RKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFP-GRVSREDLPALYRA 302 (398)
T ss_pred -cc-ccc-ccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEe-ccCCHHHHHHHHHh
Confidence 43 333 345778999999998777899999999864321 1122333343332 45555 433 4579999999
Q ss_pred cceeEEec-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 187 SRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 187 aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
||+++.+| |.+.+|||++|+|+|+ .+.++..+.+
T Consensus 303 adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~-s~~~~~~e~i 341 (398)
T cd03800 303 ADVFVNPALYEPFGLTALEAMACGLPVVA-TAVGGPRDIV 341 (398)
T ss_pred CCEEEecccccccCcHHHHHHhcCCCEEE-CCCCCHHHHc
Confidence 99999987 4566699999999885 5666666655
No 48
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.22 E-value=4.7e-10 Score=110.55 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=83.8
Q ss_pred CCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCC--CEEEecCCCcchH
Q 024872 103 VPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV--PSILVPGGSSNLK 180 (261)
Q Consensus 103 l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~--~v~v~~g~~~~~~ 180 (261)
.+++.++|+.+ +|..+.| +.+.+++++.++.++.|+++++++|++. ..+.++++++++++ ++.+. |+ .+++
T Consensus 513 ~~~~~~vIg~V--GRL~~~K-G~~~LI~A~a~l~~~~p~~~LvIvG~G~--~~~~L~~l~~~lgL~~~V~fl-G~-~~dv 585 (694)
T PRK15179 513 TSDARFTVGTV--MRVDDNK-RPFLWVEAAQRFAASHPKVRFIMVGGGP--LLESVREFAQRLGMGERILFT-GL-SRRV 585 (694)
T ss_pred cCCCCeEEEEE--EeCCccC-CHHHHHHHHHHHHHHCcCeEEEEEccCc--chHHHHHHHHHcCCCCcEEEc-CC-cchH
Confidence 44456667666 5665544 4788999999998888999999999864 24557777776654 45554 65 6789
Q ss_pred HHHHHHcceeEEec-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 181 YDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 181 ~~~~~~aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
..+|++||++|.+| |.+.+|||++|+|+|. +..++..+.+
T Consensus 586 ~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVa-t~~gG~~EiV 630 (694)
T PRK15179 586 GYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVT-TLAGGAGEAV 630 (694)
T ss_pred HHHHHhcCEEEeccccccchHHHHHHHHcCCeEEE-ECCCChHHHc
Confidence 99999999999988 5677799999999986 5556666555
No 49
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.21 E-value=2.7e-10 Score=101.09 Aligned_cols=97 Identities=10% Similarity=0.119 Sum_probs=66.8
Q ss_pred CcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHH
Q 024872 107 ATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSA 186 (261)
Q Consensus 107 ~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~ 186 (261)
..+++.+|||.+... ...+++++.++ .+++++.+++|++....+.+++..+..+ ++.+. ++ .++|.++|+.
T Consensus 171 ~~iLi~~GG~d~~~~---~~~~l~~l~~~---~~~~~i~vv~G~~~~~~~~l~~~~~~~~-~i~~~-~~-~~~m~~lm~~ 241 (279)
T TIGR03590 171 RRVLVSFGGADPDNL---TLKLLSALAES---QINISITLVTGSSNPNLDELKKFAKEYP-NIILF-ID-VENMAELMNE 241 (279)
T ss_pred CeEEEEeCCcCCcCH---HHHHHHHHhcc---ccCceEEEEECCCCcCHHHHHHHHHhCC-CEEEE-eC-HHHHHHHHHH
Confidence 456777777776432 22455555543 3567888888865333344666655433 56655 43 5799999999
Q ss_pred cceeEEechHHHHHHHHcCCCEEEEE
Q 024872 187 SRVALCTSGTVAVELQLARLPCVVAY 212 (261)
Q Consensus 187 aDl~i~~SGt~tlEa~~~G~P~Vv~~ 212 (261)
||++|+++|+++.|++++|+|+|++.
T Consensus 242 aDl~Is~~G~T~~E~~a~g~P~i~i~ 267 (279)
T TIGR03590 242 ADLAIGAAGSTSWERCCLGLPSLAIC 267 (279)
T ss_pred CCEEEECCchHHHHHHHcCCCEEEEE
Confidence 99999999955559999999999764
No 50
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.21 E-value=7e-10 Score=103.56 Aligned_cols=168 Identities=12% Similarity=0.086 Sum_probs=103.6
Q ss_pred HHhchhhheecCcchHHHHHHcCC---CeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHh-------------hc
Q 024872 38 LAAFVDHILCILPNEEAICRLNGL---AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKN-------------KY 101 (261)
Q Consensus 38 l~~~~d~v~~~~p~e~~~~~~~g~---~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~-------------~l 101 (261)
+.+.+|.+++.++...+++.+.|. ++.++.|...+. |.+.. ....+....+ ..
T Consensus 157 ~~~~ad~ii~vS~~~~~~l~~~~~~~~ki~vI~Ng~~~~---f~p~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (415)
T cd03816 157 FGRLADYNLCVTKAMKEDLQQFNNWKIRATVLYDRPPEQ---FRPLP--------LEEKHELFLKLAKTFLTRELRIGAV 225 (415)
T ss_pred HhhcCCEeeecCHHHHHHHHhhhccCCCeeecCCCCHHH---ceeCc--------HHHHHHHHHhccccccccccccccc
Confidence 356799999999999888866554 355555532222 21100 0000011110 12
Q ss_pred CCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhh------CCCeEEEEEeCCCcchHHHHHHHHhcCCC-CEEEecC
Q 024872 102 SVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDS------FPELITVIHVAPNRHVENYITGLIQKWPV-PSILVPG 174 (261)
Q Consensus 102 ~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~------~~~~~~vi~~~~~~~~~~~l~~~~~~~~~-~v~v~~g 174 (261)
++.++++.+++..| |..+. +..+.+++|++.+.+. .|+++++++|++. . ++.+++.+++.+. ++.++.|
T Consensus 226 ~~~~~~~~vi~~~g-rl~~~-K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~-~-~~~l~~~~~~~~l~~~~~~~g 301 (415)
T cd03816 226 QLSEERPALLVSST-SWTPD-EDFGILLDALVAYEKSAATGPKLPKLLCIITGKGP-L-KEKYLERIKELKLKKVTIRTP 301 (415)
T ss_pred eecCCCceEEEEec-cccCC-CCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCc-c-HHHHHHHHHHcCCCcEEEEcC
Confidence 33444554554444 44333 4577899999998642 4689999998764 2 4557777776654 4555555
Q ss_pred CC-cchHHHHHHHcceeEEe----c----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 175 GS-SNLKYDAFSASRVALCT----S----GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 175 ~~-~~~~~~~~~~aDl~i~~----S----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
+. .+++.++|++||++++. + |.+.+|+|+||+|+|. +..++..+.+
T Consensus 302 ~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~-s~~~~~~eiv 356 (415)
T cd03816 302 WLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCA-LDFKCIDELV 356 (415)
T ss_pred cCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEE-eCCCCHHHHh
Confidence 42 57899999999999852 2 3456699999999886 5666666544
No 51
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=99.21 E-value=7.3e-10 Score=101.94 Aligned_cols=191 Identities=12% Similarity=0.060 Sum_probs=111.9
Q ss_pred ccchhhhcCCCCeEEEEeCCcccccc-CCcchHHH-HHhchhhheecCcchHHHHHHcCCC---eEEEcCCCccchhhhc
Q 024872 4 AARYSHERLNGPAHFHYVAPSFWAWK-GGEARLKN-LAAFVDHILCILPNEEAICRLNGLA---ATFVGHPVVEDCLELN 78 (261)
Q Consensus 4 ~~~~~~~~~~ip~~~~yv~p~~waw~-~g~~r~~~-l~~~~d~v~~~~p~e~~~~~~~g~~---~~~vG~P~~d~~~~~~ 78 (261)
||-.|+..+|||++ |.-. ..+-+. + ....++ +.+.+|..|+..+...+.+.+.|.+ +.+||||+.|.+....
T Consensus 108 a~alaA~~~~IPv~-Hvea-G~rs~~~~-eE~~r~~i~~la~l~f~~t~~~~~~L~~eg~~~~~i~~tG~~~iD~l~~~~ 184 (365)
T TIGR03568 108 AAAIAAALLNIPIA-HIHG-GEVTEGAI-DESIRHAITKLSHLHFVATEEYRQRVIQMGEDPDRVFNVGSPGLDNILSLD 184 (365)
T ss_pred HHHHHHHHhCCcEE-EEEC-CccCCCCc-hHHHHHHHHHHHhhccCCCHHHHHHHHHcCCCCCcEEEECCcHHHHHHhhh
Confidence 44444444499995 6522 212111 1 112333 4777888888888888888877863 7789999999875321
Q ss_pred CCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEE--EcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCc--ch
Q 024872 79 LGKGPEPCELKMEGNSEDFKNKYSVPSGATVISL--LPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNR--HV 154 (261)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIll--l~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~--~~ 154 (261)
..++..+.+++|++++++.+++ -|++.. ... ..+.+.+.++.+.+...++.++++.++.. ..
T Consensus 185 ------------~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~-~~~-~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~i 250 (365)
T TIGR03568 185 ------------LLSKEELEEKLGIDLDKPYALVTFHPVTLE-KES-AEEQIKELLKALDELNKNYIFTYPNADAGSRII 250 (365)
T ss_pred ------------ccCHHHHHHHhCCCCCCCEEEEEeCCCccc-ccC-chHHHHHHHHHHHHhccCCEEEEeCCCCCchHH
Confidence 1234677788999766566433 344310 011 11233344444433223455665544211 12
Q ss_pred HHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechHHHHHHHHcCCCEEEEE
Q 024872 155 ENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAY 212 (261)
Q Consensus 155 ~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tlEa~~~G~P~Vv~~ 212 (261)
.+.+++...+. .++.++......++..+|+.||++|+-|++...||+++|+|+|.+.
T Consensus 251 ~~~i~~~~~~~-~~v~l~~~l~~~~~l~Ll~~a~~vitdSSggi~EA~~lg~Pvv~l~ 307 (365)
T TIGR03568 251 NEAIEEYVNEH-PNFRLFKSLGQERYLSLLKNADAVIGNSSSGIIEAPSFGVPTINIG 307 (365)
T ss_pred HHHHHHHhcCC-CCEEEECCCChHHHHHHHHhCCEEEEcChhHHHhhhhcCCCEEeec
Confidence 33344433222 2467665322568999999999999999555599999999999764
No 52
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.20 E-value=8.2e-10 Score=98.75 Aligned_cols=160 Identities=16% Similarity=0.129 Sum_probs=101.3
Q ss_pred HHHHhchhhheecC-cchHHHHHHcC-CCeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEE
Q 024872 36 KNLAAFVDHILCIL-PNEEAICRLNG-LAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLL 113 (261)
Q Consensus 36 ~~l~~~~d~v~~~~-p~e~~~~~~~g-~~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll 113 (261)
+.+.+.+|++++.+ ....+++...+ .++.+++||+...... .... .++.+.+.++++|+++
T Consensus 129 ~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------~~~~-~~~~~~~~~~~~i~~~ 191 (366)
T cd03822 129 RLLLRRADAVIVMSSELLRALLLRAYPEKIAVIPHGVPDPPAE----------------PPES-LKALGGLDGRPVLLTF 191 (366)
T ss_pred HHHHhcCCEEEEeeHHHHHHHHhhcCCCcEEEeCCCCcCcccC----------------Cchh-hHhhcCCCCCeEEEEE
Confidence 44677899999995 44445555433 4688899997643211 0111 1334455666777766
Q ss_pred cCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHH---HHHhcCC--CCEEEecCCC-cchHHHHHHHc
Q 024872 114 PGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYIT---GLIQKWP--VPSILVPGGS-SNLKYDAFSAS 187 (261)
Q Consensus 114 ~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~---~~~~~~~--~~v~v~~g~~-~~~~~~~~~~a 187 (261)
| |..+. +..+.++++++++.++.++++++++|++......... +++++.+ .++.+.+++. .+++.++|+.|
T Consensus 192 -G-~~~~~-K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~a 268 (366)
T cd03822 192 -G-LLRPY-KGLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAA 268 (366)
T ss_pred -e-eccCC-CCHHHHHHHHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhc
Confidence 3 33322 4567899999999887889999999875433221111 1133333 3566665532 46899999999
Q ss_pred ceeEEec-------hHHHHHHHHcCCCEEEEEcCCh
Q 024872 188 RVALCTS-------GTVAVELQLARLPCVVAYRAHF 216 (261)
Q Consensus 188 Dl~i~~S-------Gt~tlEa~~~G~P~Vv~~~~~~ 216 (261)
|+++.+| |.+.+|||++|+|+|+. +.+.
T Consensus 269 d~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~-~~~~ 303 (366)
T cd03822 269 DVVVLPYRSADQTQSGVLAYAIGFGKPVIST-PVGH 303 (366)
T ss_pred CEEEecccccccccchHHHHHHHcCCCEEec-CCCC
Confidence 9999877 23455999999998864 4443
No 53
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.20 E-value=6.1e-10 Score=103.03 Aligned_cols=156 Identities=16% Similarity=0.168 Sum_probs=103.9
Q ss_pred HHhchhhheecCcchHHHH-HHcCC---CeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEE
Q 024872 38 LAAFVDHILCILPNEEAIC-RLNGL---AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLL 113 (261)
Q Consensus 38 l~~~~d~v~~~~p~e~~~~-~~~g~---~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll 113 (261)
..+.+|.+++.++...+.+ .+.+. ++.++-|++.... |.. . ... .++++++|++.
T Consensus 141 ~~~~~d~ii~~s~~~~~~~~~~~~~~~~k~~vi~ngvd~~~--f~~------------~-~~~------~~~~~~~i~~~ 199 (398)
T cd03796 141 SLADVDHVICVSHTSKENTVLRASLDPERVSVIPNAVDSSD--FTP------------D-PSK------RDNDKITIVVI 199 (398)
T ss_pred hhccCCEEEEecHhHhhHHHHHhCCChhhEEEEcCccCHHH--cCC------------C-ccc------CCCCceEEEEE
Confidence 4677999999998876643 33343 3566766654221 211 0 000 23455666655
Q ss_pred cCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCC--CEEEecCCC-cchHHHHHHHccee
Q 024872 114 PGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV--PSILVPGGS-SNLKYDAFSASRVA 190 (261)
Q Consensus 114 ~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~--~v~v~~g~~-~~~~~~~~~~aDl~ 190 (261)
| |..+ .++.+.++++++.+.++.++++++++|++. ..+.+++.+++++. ++.+. |+. .+++.++|++||++
T Consensus 200 -g-rl~~-~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~--~~~~l~~~~~~~~l~~~v~~~-G~~~~~~~~~~l~~ad~~ 273 (398)
T cd03796 200 -S-RLVY-RKGIDLLVGIIPEICKKHPNVRFIIGGDGP--KRILLEEMREKYNLQDRVELL-GAVPHERVRDVLVQGHIF 273 (398)
T ss_pred -e-ccch-hcCHHHHHHHHHHHHhhCCCEEEEEEeCCc--hHHHHHHHHHHhCCCCeEEEe-CCCCHHHHHHHHHhCCEE
Confidence 3 4443 345778999999998778999999998763 23446666665543 35555 442 46899999999999
Q ss_pred EEec-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 191 LCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 191 i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
+.+| |.+.+|||++|+|+|+ .+.++..+.+
T Consensus 274 v~pS~~E~~g~~~~EAma~G~PVI~-s~~gg~~e~i 308 (398)
T cd03796 274 LNTSLTEAFCIAIVEAASCGLLVVS-TRVGGIPEVL 308 (398)
T ss_pred EeCChhhccCHHHHHHHHcCCCEEE-CCCCCchhhe
Confidence 9998 6677799999999986 5555555544
No 54
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=99.18 E-value=7.3e-10 Score=100.65 Aligned_cols=195 Identities=14% Similarity=0.135 Sum_probs=130.5
Q ss_pred cccchhhhcCCCCeEEEEe----CCccccccCCcchHHH-H-HhchhhheecCcchHHHHHHcCCC---eEEEcCCCccc
Q 024872 3 FAARYSHERLNGPAHFHYV----APSFWAWKGGEARLKN-L-AAFVDHILCILPNEEAICRLNGLA---ATFVGHPVVED 73 (261)
Q Consensus 3 ~~~~~~~~~~~ip~~~~yv----~p~~waw~~g~~r~~~-l-~~~~d~v~~~~p~e~~~~~~~g~~---~~~vG~P~~d~ 73 (261)
|||-.|+...+||+. |-- +-..+ |.. -+++ + ...+|.-|+......+.|.+.|++ +.+||||+.|.
T Consensus 106 lA~alaa~~~~IpV~-HvEAGlRt~~~~-~PE---E~NR~l~~~~S~~hfapte~ar~nLl~EG~~~~~IfvtGnt~iDa 180 (383)
T COG0381 106 LAGALAAFYLKIPVG-HVEAGLRTGDLY-FPE---EINRRLTSHLSDLHFAPTEIARKNLLREGVPEKRIFVTGNTVIDA 180 (383)
T ss_pred HHHHHHHHHhCCceE-EEecccccCCCC-CcH---HHHHHHHHHhhhhhcCChHHHHHHHHHcCCCccceEEeCChHHHH
Confidence 565666665599994 652 11222 332 3333 3 556777777777778888888875 78999999987
Q ss_pred hhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcc
Q 024872 74 CLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRH 153 (261)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~ 153 (261)
+...... -.........+-.+.+++.|++. +.|...+...+..+.+++.++.++++++.++.+.++++.
T Consensus 181 l~~~~~~----------~~~~~~~~~~~~~~~~~~~iLvT-~HRreN~~~~~~~i~~al~~i~~~~~~~~viyp~H~~~~ 249 (383)
T COG0381 181 LLNTRDR----------VLEDSKILAKGLDDKDKKYILVT-AHRRENVGEPLEEICEALREIAEEYPDVIVIYPVHPRPR 249 (383)
T ss_pred HHHHHhh----------hccchhhHHhhhccccCcEEEEE-cchhhcccccHHHHHHHHHHHHHhCCCceEEEeCCCChh
Confidence 6643110 00112222221123345566655 688765545577899999999988899999999998765
Q ss_pred hHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechHHHHHHHHcCCCEEEEEcC
Q 024872 154 VENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRA 214 (261)
Q Consensus 154 ~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tlEa~~~G~P~Vv~~~~ 214 (261)
+++.....+++. .++.++++.-..++..+|..|-++++-||+..-||..+|+|++++...
T Consensus 250 v~e~~~~~L~~~-~~v~li~pl~~~~f~~L~~~a~~iltDSGgiqEEAp~lg~Pvl~lR~~ 309 (383)
T COG0381 250 VRELVLKRLKNV-ERVKLIDPLGYLDFHNLMKNAFLILTDSGGIQEEAPSLGKPVLVLRDT 309 (383)
T ss_pred hhHHHHHHhCCC-CcEEEeCCcchHHHHHHHHhceEEEecCCchhhhHHhcCCcEEeeccC
Confidence 555432223332 257777543346899999999999999999999999999999988644
No 55
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.17 E-value=3.1e-11 Score=105.62 Aligned_cols=163 Identities=20% Similarity=0.206 Sum_probs=109.8
Q ss_pred HhchhhheecCcchHHHHHHcCCCeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcH
Q 024872 39 AAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRL 118 (261)
Q Consensus 39 ~~~~d~v~~~~p~e~~~~~~~g~~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~ 118 (261)
.|.|-.+|.-.-++.+.+.+.|+++.++|||++|.+.. +....+. +-...++|.++||||.
T Consensus 176 ~rrc~~vf~rD~~Taq~L~~rgvna~~vGnpmmD~L~p--------------~~~~~q~-----l~~g~~viaLLPGsR~ 236 (412)
T COG4370 176 RRRCWAVFPRDALTAQHLANRGVNAAYVGNPMMDGLPP--------------PERDPQL-----LLTGVPVIALLPGSRV 236 (412)
T ss_pred cccceeeeccccccHHHHHhcCCchhhccChhhccCCC--------------ccCCchh-----hccCCceEEecCCCCC
Confidence 44566666666667788989999999999999998642 1111121 1245679999999998
Q ss_pred HHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHH--hcCCC--------CEEEecCCCcchHHHHHHHcc
Q 024872 119 QEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLI--QKWPV--------PSILVPGGSSNLKYDAFSASR 188 (261)
Q Consensus 119 ~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~--~~~~~--------~v~v~~g~~~~~~~~~~~~aD 188 (261)
.|...+++.++.++..+...+..+.|.-...+.... ..+.... .+|+. ++.+..- ...+.+++.++|
T Consensus 237 pea~~nl~~il~slcal~~~~a~vvfw~ai~~~lpl-~~l~~l~e~~gWq~~ad~~~kdnc~l~ls--qqsfadiLH~ad 313 (412)
T COG4370 237 PEAQTNLAVILGSLCALPAMFALVVFWAAIAPELPL-LLLWTLEERQGWQPLADRFGKDNCSLWLS--QQSFADILHAAD 313 (412)
T ss_pred hHHHhhHHHHHHHHhhhHHHHHHHHHHhccCcCCCH-HHHHHHHHhcCcchhhhhhccCceEEEEe--HHHHHHHHHHHH
Confidence 788888999999777665544443333222332221 1122211 12321 3333221 457899999999
Q ss_pred eeEEechHHHHHHHHcCCCEEEEE-cCChHHHHHHH
Q 024872 189 VALCTSGTVAVELQLARLPCVVAY-RAHFLTEWFIR 223 (261)
Q Consensus 189 l~i~~SGt~tlEa~~~G~P~Vv~~-~~~~~~~~ia~ 223 (261)
+++..+||+|.++..+|+|+|-+. .++.+++-+|+
T Consensus 314 aalgmAGTAtEQavGLGkPvi~fPg~GPQy~pgFA~ 349 (412)
T COG4370 314 AALGMAGTATEQAVGLGKPVIGFPGQGPQYNPGFAE 349 (412)
T ss_pred HHHHhccchHHHhhccCCceeecCCCCCCcChHHHH
Confidence 999999999999999999998653 56778888875
No 56
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.17 E-value=3.7e-09 Score=93.13 Aligned_cols=164 Identities=16% Similarity=0.198 Sum_probs=109.3
Q ss_pred HHHhchhhheecCcchHHHHHHcC-C---CeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEE
Q 024872 37 NLAAFVDHILCILPNEEAICRLNG-L---AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISL 112 (261)
Q Consensus 37 ~l~~~~d~v~~~~p~e~~~~~~~g-~---~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIll 112 (261)
.+.+.+|.+++.++...+.+.+.+ . ++.+++|++..... . ... ...+.....+.+.+++++
T Consensus 140 ~~~~~~d~~i~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~------------~~~-~~~~~~~~~~~~~~~i~~ 204 (374)
T cd03801 140 RALRRADRIIAVSEATREELRELGGVPPEKITVIPNGVDTERF--R------------PAP-RAARRRLGIPEDEPVILF 204 (374)
T ss_pred HHHHhCCEEEEecHHHHHHHHhcCCCCCCcEEEecCccccccc--C------------ccc-hHHHhhcCCcCCCeEEEE
Confidence 356779999999999988887653 3 47788888754321 1 001 233344455556666665
Q ss_pred EcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCC--CCEEEecCCC-cchHHHHHHHcce
Q 024872 113 LPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWP--VPSILVPGGS-SNLKYDAFSASRV 189 (261)
Q Consensus 113 l~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~--~~v~v~~g~~-~~~~~~~~~~aDl 189 (261)
+ |+.. . .+..+.+++++..+.+..+++++++.|++. ..+.+++.+++.+ .++.+. |++ .+++.++|+.||+
T Consensus 205 ~-g~~~-~-~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~v~~~-g~~~~~~~~~~~~~~di 278 (374)
T cd03801 205 V-GRLV-P-RKGVDLLLEALAKLRKEYPDVRLVIVGDGP--LREELEALAAELGLGDRVTFL-GFVPDEDLPALYAAADV 278 (374)
T ss_pred e-cchh-h-hcCHHHHHHHHHHHhhhcCCeEEEEEeCcH--HHHHHHHHHHHhCCCcceEEE-eccChhhHHHHHHhcCE
Confidence 5 4433 2 345678999999998777889999988653 2344455443322 245554 332 3789999999999
Q ss_pred eEEec-----hHHHHHHHHcCCCEEEEEcCChHHHHHH
Q 024872 190 ALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWFI 222 (261)
Q Consensus 190 ~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~ia 222 (261)
+|.+| |+..+||+++|+|+|+ ...++....+.
T Consensus 279 ~i~~~~~~~~~~~~~Ea~~~g~pvI~-~~~~~~~~~~~ 315 (374)
T cd03801 279 FVLPSLYEGFGLVLLEAMAAGLPVVA-SDVGGIPEVVE 315 (374)
T ss_pred EEecchhccccchHHHHHHcCCcEEE-eCCCChhHHhc
Confidence 99887 5566699999999886 56566666554
No 57
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.17 E-value=4.2e-10 Score=101.21 Aligned_cols=157 Identities=11% Similarity=0.131 Sum_probs=103.2
Q ss_pred chhhheecCcchHHHHHHcC----CCeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCC
Q 024872 41 FVDHILCILPNEEAICRLNG----LAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGS 116 (261)
Q Consensus 41 ~~d~v~~~~p~e~~~~~~~g----~~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GS 116 (261)
..+.+++.+....+.+.+.+ .++.+++||+..... .+.++...++.++++++..++++.+.+
T Consensus 135 ~~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~--------------~~~~~~~~~~~~~~~~~~~~i~~~~~~ 200 (365)
T cd03825 135 LNLTIVAPSRWLADCARSSSLFKGIPIEVIPNGIDTTIF--------------RPRDKREARKRLGLPADKKIILFGAVG 200 (365)
T ss_pred CCcEEEehhHHHHHHHHhccccCCCceEEeCCCCccccc--------------CCCcHHHHHHHhCCCCCCeEEEEEecC
Confidence 35566777776677776543 357889999754321 123456677888998887766543222
Q ss_pred cHHHHHhhHHHHHHHHHHHhhh-CCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCC--cchHHHHHHHcceeEEe
Q 024872 117 RLQEVARMLPIFAKTVELLKDS-FPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGS--SNLKYDAFSASRVALCT 193 (261)
Q Consensus 117 R~~ei~~~~~~ll~a~~~l~~~-~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~--~~~~~~~~~~aDl~i~~ 193 (261)
.. ...+..+.++++++.+.++ .++++++++|++... . .. ....++.+. |++ .+++..+|+.||+++.+
T Consensus 201 ~~-~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~--~--~~---~~~~~v~~~-g~~~~~~~~~~~~~~ad~~l~p 271 (365)
T cd03825 201 GT-DPRKGFDELIEALKRLAERWKDDIELVVFGASDPE--I--PP---DLPFPVHYL-GSLNDDESLALIYSAADVFVVP 271 (365)
T ss_pred CC-ccccCHHHHHHHHHHhhhccCCCeEEEEeCCCchh--h--hc---cCCCceEec-CCcCCHHHHHHHHHhCCEEEec
Confidence 22 1234577899999988754 578999888765321 1 11 122245544 432 23688999999999999
Q ss_pred c-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 194 S-----GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 194 S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
| |.+++|||++|+|+|. ++.+++.+.+
T Consensus 272 s~~e~~g~~~~Eam~~g~PvI~-~~~~~~~e~~ 303 (365)
T cd03825 272 SLQENFPNTAIEALACGTPVVA-FDVGGIPDIV 303 (365)
T ss_pred cccccccHHHHHHHhcCCCEEE-ecCCCChhhe
Confidence 8 6778899999999875 5666666544
No 58
>PHA01630 putative group 1 glycosyl transferase
Probab=99.17 E-value=4.8e-10 Score=101.82 Aligned_cols=175 Identities=11% Similarity=0.026 Sum_probs=108.9
Q ss_pred chhhhcCCCCeEEEEeCCccccccCCcchH-HHH-HhchhhheecCcchHHHHHHcCC----CeEEEcCCCccchhhhcC
Q 024872 6 RYSHERLNGPAHFHYVAPSFWAWKGGEARL-KNL-AAFVDHILCILPNEEAICRLNGL----AATFVGHPVVEDCLELNL 79 (261)
Q Consensus 6 ~~~~~~~~ip~~~~yv~p~~waw~~g~~r~-~~l-~~~~d~v~~~~p~e~~~~~~~g~----~~~~vG~P~~d~~~~~~~ 79 (261)
+.+.+. |+|+ +|.+.-+.. .. ... ..+ .+.+|.+++.++...+.+++.|. +++++.|++..+. |..
T Consensus 63 ~~~~~~-~~~~-v~e~~~~~~-l~---~~~~~~~~~~~ad~ii~~S~~~~~~l~~~g~~~~~~i~vIpNGVd~~~--f~~ 134 (331)
T PHA01630 63 KGIPHV-GKNI-VFEVADTDA-IS---HTALYFFRNQPVDEIVVPSQWSKNAFYTSGLKIPQPIYVIPHNLNPRM--FEY 134 (331)
T ss_pred hhcccc-CCce-EEEEEeech-hh---HHHHHHHhhccCCEEEECCHHHHHHHHHcCCCCCCCEEEECCCCCHHH--cCC
Confidence 334444 7788 466554421 11 022 223 46699999999999988877664 4667788765332 211
Q ss_pred CCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHH
Q 024872 80 GKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYIT 159 (261)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~ 159 (261)
... +.+.+.+++++|.. .+ .++.+.+++|++.+.++.++++++++|++..+ ..+
T Consensus 135 ------------~~~---------~~~~~~vl~~~g~~-~~-~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~~--~~l- 188 (331)
T PHA01630 135 ------------KPK---------EKPHPCVLAILPHS-WD-RKGGDIVVKIFHELQNEGYDFYFLIKSSNMLD--PRL- 188 (331)
T ss_pred ------------Ccc---------ccCCCEEEEEeccc-cc-cCCHHHHHHHHHHHHhhCCCEEEEEEeCcccc--hhh-
Confidence 000 11245555565433 33 34678899999999877789999998854221 111
Q ss_pred HHHhcCCCCEEEecCCCcchHHHHHHHcceeEEec-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 160 GLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 160 ~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
.+.. .+......+++.++|+.||+++.+| |.+.+|||+||+|+|.+ ..+++.+.+
T Consensus 189 ---~~~~---~~~~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas-~~gg~~E~i 248 (331)
T PHA01630 189 ---FGLN---GVKTPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVT-EKGAWSEWV 248 (331)
T ss_pred ---cccc---ceeccCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEe-CCCCchhhc
Confidence 1111 1110111468999999999999998 66777999999999875 455566555
No 59
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.16 E-value=6.9e-10 Score=105.96 Aligned_cols=113 Identities=15% Similarity=0.052 Sum_probs=82.1
Q ss_pred cCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCC--CEEEecCCCcc
Q 024872 101 YSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV--PSILVPGGSSN 178 (261)
Q Consensus 101 l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~--~v~v~~g~~~~ 178 (261)
.+++++.++|+.+ +|....| ....+++++.++.++.|+++++++|++. .++.+++.+++.+. ++.+. |+ .+
T Consensus 392 ~~l~~~~~vIg~V--gRl~~~K-g~~~LI~A~a~llk~~pdirLvIVGdG~--~~eeLk~la~elgL~d~V~Fl-G~-~~ 464 (578)
T PRK15490 392 QKTQDADTTIGGV--FRFVGDK-NPFAWIDFAARYLQHHPATRFVLVGDGD--LRAEAQKRAEQLGILERILFV-GA-SR 464 (578)
T ss_pred hccCCCCcEEEEE--EEEehhc-CHHHHHHHHHHHHhHCCCeEEEEEeCch--hHHHHHHHHHHcCCCCcEEEC-CC-hh
Confidence 3555566666655 4544344 3567888888887778999999998763 34557777766554 46655 55 67
Q ss_pred hHHHHHHHcceeEEec-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 179 LKYDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 179 ~~~~~~~~aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
++.++|+.||++|.+| |.+.+|||++|+|+|. +..++..+.+
T Consensus 465 Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVVA-TdvGG~~EiV 511 (578)
T PRK15490 465 DVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPVIS-TPAGGSAECF 511 (578)
T ss_pred hHHHHHHhCCEEEEcccccCccHHHHHHHHhCCCEEE-eCCCCcHHHc
Confidence 9999999999999988 6677799999999885 5556665554
No 60
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=99.15 E-value=9e-11 Score=107.21 Aligned_cols=192 Identities=14% Similarity=0.110 Sum_probs=109.6
Q ss_pred cccchhhhcCCCCeEEEEeCC-ccccccCC--cchHHH-HHhchhhheecCcchHHHHHHcCCC---eEEEcCCCccchh
Q 024872 3 FAARYSHERLNGPAHFHYVAP-SFWAWKGG--EARLKN-LAAFVDHILCILPNEEAICRLNGLA---ATFVGHPVVEDCL 75 (261)
Q Consensus 3 ~~~~~~~~~~~ip~~~~yv~p-~~waw~~g--~~r~~~-l~~~~d~v~~~~p~e~~~~~~~g~~---~~~vG~P~~d~~~ 75 (261)
|||-.|+..++||+ +|.-.. .-+.+..| ...... +.+.+|.-|+..+...+.+.+.|.+ +.+||+|..|.+.
T Consensus 81 la~alaA~~~~ipv-~HieaGlRs~d~~~g~~de~~R~~i~~la~lhf~~t~~~~~~L~~~G~~~~rI~~vG~~~~D~l~ 159 (346)
T PF02350_consen 81 LAAALAAFYLNIPV-AHIEAGLRSGDRTEGMPDEINRHAIDKLAHLHFAPTEEARERLLQEGEPPERIFVVGNPGIDALL 159 (346)
T ss_dssp HHHHHHHHHTT-EE-EEES-----S-TTSSTTHHHHHHHHHHH-SEEEESSHHHHHHHHHTT--GGGEEE---HHHHHHH
T ss_pred HHHHHHHHHhCCCE-EEecCCCCccccCCCCchhhhhhhhhhhhhhhccCCHHHHHHHHhcCCCCCeEEEEChHHHHHHH
Confidence 45555555669998 586333 00011111 123333 4778999999999999999888884 8899999999875
Q ss_pred hhcCCCCCCCcccccCCCcHHHHhhcCC--CCCCcEEEEEcCCcHHHH--HhhHHHHHHHHHHHhhhCCCeEEEEEeCCC
Q 024872 76 ELNLGKGPEPCELKMEGNSEDFKNKYSV--PSGATVISLLPGSRLQEV--ARMLPIFAKTVELLKDSFPELITVIHVAPN 151 (261)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~r~~l~l--~~~~~vIlll~GSR~~ei--~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~ 151 (261)
.... ...+... ..++ +..++.+++.. .|.... ...+..+.++++.|.+. +++++|+..+++
T Consensus 160 ~~~~------------~~~~~~~-~~~i~~~~~~~~iLvt~-H~~t~~~~~~~~~~i~~~l~~L~~~-~~~~vi~~~hn~ 224 (346)
T PF02350_consen 160 QNKE------------EIEEKYK-NSGILQDAPKPYILVTL-HPVTNEDNPERLEQILEALKALAER-QNVPVIFPLHNN 224 (346)
T ss_dssp HHHH------------TTCC-HH-HHHHHHCTTSEEEEEE--S-CCCCTHH--HHHHHHHHHHHHHH-TTEEEEEE--S-
T ss_pred HhHH------------HHhhhhh-hHHHHhccCCCEEEEEe-CcchhcCChHHHHHHHHHHHHHHhc-CCCcEEEEecCC
Confidence 3210 1111110 0122 24556666553 333211 11234677788888876 789999999866
Q ss_pred cchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechHHHHHHHHcCCCEEEE
Q 024872 152 RHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVA 211 (261)
Q Consensus 152 ~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tlEa~~~G~P~Vv~ 211 (261)
+...+.+.+.++++. ++.++......++..+|+.|+++|+-||+...||..+|+|+|.+
T Consensus 225 p~~~~~i~~~l~~~~-~v~~~~~l~~~~~l~ll~~a~~vvgdSsGI~eEa~~lg~P~v~i 283 (346)
T PF02350_consen 225 PRGSDIIIEKLKKYD-NVRLIEPLGYEEYLSLLKNADLVVGDSSGIQEEAPSLGKPVVNI 283 (346)
T ss_dssp HHHHHHHHHHHTT-T-TEEEE----HHHHHHHHHHESEEEESSHHHHHHGGGGT--EEEC
T ss_pred chHHHHHHHHhcccC-CEEEECCCCHHHHHHHHhcceEEEEcCccHHHHHHHhCCeEEEe
Confidence 555555666666653 67776433356899999999999999996655999999999987
No 61
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.14 E-value=7.7e-10 Score=102.23 Aligned_cols=167 Identities=13% Similarity=0.053 Sum_probs=104.8
Q ss_pred HhchhhheecCcchHHHHHH-cCCCeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCc
Q 024872 39 AAFVDHILCILPNEEAICRL-NGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSR 117 (261)
Q Consensus 39 ~~~~d~v~~~~p~e~~~~~~-~g~~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR 117 (261)
.+.+|.+++.++...+.+++ .+-++.++.|++..+. |.+. +......+...+++++.++|++.+.+
T Consensus 154 ~~~ad~vi~~s~~~~~~~~~~~~~ki~vI~ngvd~~~--f~~~----------~~~~~~~~~~~~~~~~~~~i~~vgR~- 220 (396)
T cd03818 154 LAQADAGVSPTRWQRSTFPAELRSRISVIHDGIDTDR--LRPD----------PQARLRLPNGRVLTPGDEVITFVARN- 220 (396)
T ss_pred HHhCCEEECCCHHHHhhCcHhhccceEEeCCCccccc--cCCC----------chhhhcccccccCCCCCeEEEEECCC-
Confidence 56799999999988877754 2346778888875322 2110 01111122233455667777765321
Q ss_pred HHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCc----------chHHH-HHHHHhcC-CCCEEEecCCC-cchHHHHH
Q 024872 118 LQEVARMLPIFAKTVELLKDSFPELITVIHVAPNR----------HVENY-ITGLIQKW-PVPSILVPGGS-SNLKYDAF 184 (261)
Q Consensus 118 ~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~----------~~~~~-l~~~~~~~-~~~v~v~~g~~-~~~~~~~~ 184 (261)
... .++.+.+++|+.++.++.|+++++++|++.. ++.+. +++..... ..++.+. |+. .+++.++|
T Consensus 221 l~~-~Kg~~~ll~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~-G~v~~~~~~~~l 298 (396)
T cd03818 221 LEP-YRGFHVFMRALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFL-GRVPYDQYLALL 298 (396)
T ss_pred ccc-ccCHHHHHHHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEe-CCCCHHHHHHHH
Confidence 322 3567889999999988889999999986321 11121 22211111 1246655 443 46899999
Q ss_pred HHcceeEEec-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 185 SASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 185 ~~aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
+.||+++.+| |.+.+|||+||+|+|. ...++..+.+
T Consensus 299 ~~adv~v~~s~~e~~~~~llEAmA~G~PVIa-s~~~g~~e~i 339 (396)
T cd03818 299 QVSDVHVYLTYPFVLSWSLLEAMACGCLVVG-SDTAPVREVI 339 (396)
T ss_pred HhCcEEEEcCcccccchHHHHHHHCCCCEEE-cCCCCchhhc
Confidence 9999999988 3466799999999886 5556666555
No 62
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.14 E-value=6.3e-10 Score=105.15 Aligned_cols=175 Identities=14% Similarity=0.097 Sum_probs=112.3
Q ss_pred HHhchhhheecCcchHHHHHH-------------cCCCeEEEcCCCccchhhhcCCCCCC-------CcccccCCCcHHH
Q 024872 38 LAAFVDHILCILPNEEAICRL-------------NGLAATFVGHPVVEDCLELNLGKGPE-------PCELKMEGNSEDF 97 (261)
Q Consensus 38 l~~~~d~v~~~~p~e~~~~~~-------------~g~~~~~vG~P~~d~~~~~~~~~~~~-------~~~~~~~~~~~~~ 97 (261)
..+.+|.++++++.-.+.+.+ ...++..+-|.+.... +++..+.. .........+..+
T Consensus 207 ~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~~~~ki~~I~NGid~~~--~~p~~~~~~~~~~~~~~~~~~~~~k~~l 284 (476)
T cd03791 207 GIVYADAVTTVSPTYAREILTPEFGEGLDGLLRARAGKLSGILNGIDYDV--WNPATDPHLPANYSADDLEGKAENKAAL 284 (476)
T ss_pred HHHhcCcCeecCHhHHHHhCCCCCCcchHHHHHhccCCeEEEeCCCcCcc--cCccccchhhhcCCccccccHHHHHHHH
Confidence 366799999999876655432 2234666666664221 21110000 0000001134567
Q ss_pred HhhcCCC--CCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCC
Q 024872 98 KNKYSVP--SGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGG 175 (261)
Q Consensus 98 r~~l~l~--~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~ 175 (261)
++++|++ ++.++|++. ||..+.| .++.++++++++.++ +++|+++|.+...+.+.+++..++...++.++.++
T Consensus 285 ~~~~g~~~~~~~~~i~~v--Grl~~~K-g~~~li~a~~~l~~~--~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~ 359 (476)
T cd03791 285 QEELGLPVDPDAPLFGFV--GRLTEQK-GIDLLLEALPELLEL--GGQLVILGSGDPEYEEALRELAARYPGRVAVLIGY 359 (476)
T ss_pred HHHcCCCcCCCCCEEEEE--eeccccc-cHHHHHHHHHHHHHc--CcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeC
Confidence 8899995 677877766 4665444 578899999998764 48999998764444455565555544456666565
Q ss_pred CcchHHHHHHHcceeEEec-----hHHHHHHHHcCCCEEEEEcCChHHHH
Q 024872 176 SSNLKYDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEW 220 (261)
Q Consensus 176 ~~~~~~~~~~~aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~ 220 (261)
..+....+|++||+++.+| |.+.+|||++|+|+|+ .+.+++.+.
T Consensus 360 ~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~-~~~gg~~e~ 408 (476)
T cd03791 360 DEALAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIV-RATGGLADT 408 (476)
T ss_pred CHHHHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEE-CcCCCccce
Confidence 4445678999999999988 7788899999999885 555555443
No 63
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.13 E-value=3.6e-09 Score=94.04 Aligned_cols=178 Identities=13% Similarity=0.073 Sum_probs=108.8
Q ss_pred hhhcCCCCeEEEEeCCccccccCCcchHHHHHhchhhheecCcchHHHHHHcCC---CeEEEcCCCccchhhhcCCCCCC
Q 024872 8 SHERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGL---AATFVGHPVVEDCLELNLGKGPE 84 (261)
Q Consensus 8 ~~~~~~ip~~~~yv~p~~waw~~g~~r~~~l~~~~d~v~~~~p~e~~~~~~~g~---~~~~vG~P~~d~~~~~~~~~~~~ 84 (261)
+++. ++|++ +..+.. |...+ ....+....|.+++.+++..+.+.+.+. ++.++.|++......
T Consensus 116 ~~~~-~~~~i-~~~hd~-~~~~~---~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~vi~n~~~~~~~~-------- 181 (359)
T cd03823 116 ARDR-GIPIV-LTLHDY-WLICP---RQGLFKKGGDAVIAPSRFLLDRYVANGLFAEKISVIRNGIDLDRAK-------- 181 (359)
T ss_pred HHhc-CCCEE-EEEeee-eeecc---hhhhhccCCCEEEEeCHHHHHHHHHcCCCccceEEecCCcChhhcc--------
Confidence 4444 89995 433332 21111 2222333449999999998888877665 567788876533210
Q ss_pred CcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhc
Q 024872 85 PCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQK 164 (261)
Q Consensus 85 ~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~ 164 (261)
. .. . +.+.++.+++++ |+.. + .+..+.++++++.+.+ ++++++++|++.... . ..... .
T Consensus 182 -------~-~~----~-~~~~~~~~i~~~-G~~~-~-~k~~~~li~~~~~l~~--~~~~l~i~G~~~~~~-~-~~~~~-~ 240 (359)
T cd03823 182 -------R-PR----R-APPGGRLRFGFI-GQLT-P-HKGVDLLLEAFKRLPR--GDIELVIVGNGLELE-E-ESYEL-E 240 (359)
T ss_pred -------c-cc----c-CCCCCceEEEEE-ecCc-c-ccCHHHHHHHHHHHHh--cCcEEEEEcCchhhh-H-HHHhh-c
Confidence 0 00 0 234455555554 4433 2 3456789999998876 689999888764321 1 12111 2
Q ss_pred CCCCEEEecCCC-cchHHHHHHHcceeEEec------hHHHHHHHHcCCCEEEEEcCChHHHHHH
Q 024872 165 WPVPSILVPGGS-SNLKYDAFSASRVALCTS------GTVAVELQLARLPCVVAYRAHFLTEWFI 222 (261)
Q Consensus 165 ~~~~v~v~~g~~-~~~~~~~~~~aDl~i~~S------Gt~tlEa~~~G~P~Vv~~~~~~~~~~ia 222 (261)
...++.+. |++ .+++.++|+.||+++.+| |.+.+|+|++|+|+|. .+.+.....+.
T Consensus 241 ~~~~v~~~-g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~-~~~~~~~e~i~ 303 (359)
T cd03823 241 GDPRVEFL-GAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIA-SDIGGMAELVR 303 (359)
T ss_pred CCCeEEEe-CCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEE-CCCCCHHHHhc
Confidence 22345555 442 478999999999999886 3456699999999886 56666665553
No 64
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.13 E-value=2.6e-09 Score=97.84 Aligned_cols=165 Identities=16% Similarity=0.157 Sum_probs=104.9
Q ss_pred HhchhhheecCcchHHHHHHc-C-C--C-eEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEE
Q 024872 39 AAFVDHILCILPNEEAICRLN-G-L--A-ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLL 113 (261)
Q Consensus 39 ~~~~d~v~~~~p~e~~~~~~~-g-~--~-~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll 113 (261)
.+.+|.+++.++...+.+.+. + . + ..++-|++.... +.. ......++....+++.++++.+
T Consensus 152 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~n~vd~~~--~~~------------~~~~~~~~~~~~~~~~~~i~~~ 217 (392)
T cd03805 152 TGMADKIVVNSNFTASVFKKTFPSLAKNPREVVYPCVDTDS--FES------------TSEDPDPGLLIPKSGKKTFLSI 217 (392)
T ss_pred hhCceEEEEcChhHHHHHHHHhcccccCCcceeCCCcCHHH--cCc------------ccccccccccccCCCceEEEEE
Confidence 566999999999888777542 2 1 1 225555554321 211 0011122333455566666554
Q ss_pred cCCcHHHHHhhHHHHHHHHHHHhhhC---CCeEEEEEeCCCcc------hHHHHHHHHhc-CCC--CEEEecCCC-cchH
Q 024872 114 PGSRLQEVARMLPIFAKTVELLKDSF---PELITVIHVAPNRH------VENYITGLIQK-WPV--PSILVPGGS-SNLK 180 (261)
Q Consensus 114 ~GSR~~ei~~~~~~ll~a~~~l~~~~---~~~~~vi~~~~~~~------~~~~l~~~~~~-~~~--~v~v~~g~~-~~~~ 180 (261)
+|..+ .++.+.++++++++.++. ++++++++|++... +.+.+++.+++ .+. ++.+. |+. .+++
T Consensus 218 --grl~~-~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~-g~~~~~~~ 293 (392)
T cd03805 218 --NRFER-KKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFL-PSISDSQK 293 (392)
T ss_pred --eeecc-cCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEe-CCCChHHH
Confidence 34433 345788999999998776 79999999876431 22445666655 443 46665 443 4567
Q ss_pred HHHHHHcceeEEec-----hHHHHHHHHcCCCEEEEEcCChHHHHHH
Q 024872 181 YDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWFI 222 (261)
Q Consensus 181 ~~~~~~aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~ia 222 (261)
.++|+.||+++.+| |.+.+|||++|+|+|. .+.++....+.
T Consensus 294 ~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~-s~~~~~~e~i~ 339 (392)
T cd03805 294 ELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIA-CNSGGPLETVV 339 (392)
T ss_pred HHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEE-ECCCCcHHHhc
Confidence 89999999999887 6677899999999886 55666665553
No 65
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.12 E-value=7.9e-10 Score=104.21 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=76.6
Q ss_pred cEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHc
Q 024872 108 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSAS 187 (261)
Q Consensus 108 ~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~a 187 (261)
++++.+ +|.++ .+++..++++++++.+..|+++++++|++. + ++.+++.+++.+++..++.|+ .+..++|+.+
T Consensus 229 ~~~l~v--GRL~~-eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp-~-~~~L~~~a~~l~l~~~vf~G~--~~~~~~~~~~ 301 (462)
T PLN02846 229 KGAYYI--GKMVW-SKGYKELLKLLHKHQKELSGLEVDLYGSGE-D-SDEVKAAAEKLELDVRVYPGR--DHADPLFHDY 301 (462)
T ss_pred eEEEEE--ecCcc-cCCHHHHHHHHHHHHhhCCCeEEEEECCCc-c-HHHHHHHHHhcCCcEEEECCC--CCHHHHHHhC
Confidence 345544 67765 456889999999998777899999998873 3 355788887777666667674 4566899999
Q ss_pred ceeEEec-----hHHHHHHHHcCCCEEEEE
Q 024872 188 RVALCTS-----GTVAVELQLARLPCVVAY 212 (261)
Q Consensus 188 Dl~i~~S-----Gt~tlEa~~~G~P~Vv~~ 212 (261)
|++|.+| |++++|||++|+|+|...
T Consensus 302 DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~ 331 (462)
T PLN02846 302 KVFLNPSTTDVVCTTTAEALAMGKIVVCAN 331 (462)
T ss_pred CEEEECCCcccchHHHHHHHHcCCcEEEec
Confidence 9999999 889999999999998653
No 66
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.11 E-value=2e-09 Score=94.62 Aligned_cols=145 Identities=14% Similarity=0.126 Sum_probs=99.5
Q ss_pred HHHhchhhheecCcchHHHH-HHcCCCeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcC
Q 024872 37 NLAAFVDHILCILPNEEAIC-RLNGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPG 115 (261)
Q Consensus 37 ~l~~~~d~v~~~~p~e~~~~-~~~g~~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~G 115 (261)
.+.+.+|.+++.++.....+ ...+.++.+++||+...... . . .+.++++++.+ |
T Consensus 131 ~~~~~~d~ii~~s~~~~~~~~~~~~~~~~vi~~~~~~~~~~---------------~-~--------~~~~~~~i~~~-g 185 (348)
T cd03820 131 LLYRRADAVVVLTEEDRALYYKKFNKNVVVIPNPLPFPPEE---------------P-S--------SDLKSKRILAV-G 185 (348)
T ss_pred HHHhcCCEEEEeCHHHHHHhhccCCCCeEEecCCcChhhcc---------------c-c--------CCCCCcEEEEE-E
Confidence 35778999999998885222 22344688899987643210 0 0 23455666666 3
Q ss_pred CcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCC--CEEEecCCCcchHHHHHHHcceeEEe
Q 024872 116 SRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV--PSILVPGGSSNLKYDAFSASRVALCT 193 (261)
Q Consensus 116 SR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~--~v~v~~g~~~~~~~~~~~~aDl~i~~ 193 (261)
+. .. .+..+.++++++.+.+..++++++++|.+.. .+.+++..++.+. ++.+. |. .+++.++|+.||+++.+
T Consensus 186 ~~-~~-~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~--~~~~~~~~~~~~~~~~v~~~-g~-~~~~~~~~~~ad~~i~p 259 (348)
T cd03820 186 RL-VP-QKGFDLLIEAWAKIAKKHPDWKLRIVGDGPE--REALEALIKELGLEDRVILL-GF-TKNIEEYYAKASIFVLT 259 (348)
T ss_pred ee-cc-ccCHHHHHHHHHHHHhcCCCeEEEEEeCCCC--HHHHHHHHHHcCCCCeEEEc-CC-cchHHHHHHhCCEEEeC
Confidence 32 22 3457889999999987788999999887532 3445555555443 34443 44 57899999999999999
Q ss_pred c-----hHHHHHHHHcCCCEEEEE
Q 024872 194 S-----GTVAVELQLARLPCVVAY 212 (261)
Q Consensus 194 S-----Gt~tlEa~~~G~P~Vv~~ 212 (261)
| |.+.+|+|++|+|+|+..
T Consensus 260 s~~e~~~~~~~Ea~a~G~Pvi~~~ 283 (348)
T cd03820 260 SRFEGFPMVLLEAMAFGLPVISFD 283 (348)
T ss_pred ccccccCHHHHHHHHcCCCEEEec
Confidence 9 777789999999988643
No 67
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.11 E-value=4.1e-09 Score=94.36 Aligned_cols=189 Identities=16% Similarity=0.091 Sum_probs=117.6
Q ss_pred ccchhhhcCCCCeEEEEeCCccccccCCcchHHHHHhchhhheecCcchHHHHHHc-CC---CeEEEcCCCccchhhhcC
Q 024872 4 AARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLN-GL---AATFVGHPVVEDCLELNL 79 (261)
Q Consensus 4 ~~~~~~~~~~ip~~~~yv~p~~waw~~g~~r~~~l~~~~d~v~~~~p~e~~~~~~~-g~---~~~~vG~P~~d~~~~~~~ 79 (261)
.+.++++..++|+++..-.+..|.... ....++..+.+|.+++.++...+.+++. |. ++.++.|++...... .
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vi~~s~~~~~~l~~~~~~~~~~~~vi~~~~d~~~~~--~ 170 (355)
T cd03799 94 VAMLASRLGGIPYSFTAHGKDIFRSPD-AIDLDEKLARADFVVAISEYNRQQLIRLLGCDPDKIHVVHCGVDLERFP--P 170 (355)
T ss_pred HHHHHHHhcCCCEEEEEecccccccCc-hHHHHHHHhhCCEEEECCHHHHHHHHHhcCCCcccEEEEeCCcCHHHcC--C
Confidence 345555554788864332233332221 1144556678999999999999988764 32 467788876533221 0
Q ss_pred CCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHH
Q 024872 80 GKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYIT 159 (261)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~ 159 (261)
. . ...+.+...|+.+ |+- .. .+..+.++++++++.+..++++++++|.+.. .+.++
T Consensus 171 ------------~--~-----~~~~~~~~~i~~~-g~~-~~-~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~--~~~~~ 226 (355)
T cd03799 171 ------------R--P-----PPPPGEPLRILSV-GRL-VE-KKGLDYLLEALALLKDRGIDFRLDIVGDGPL--RDELE 226 (355)
T ss_pred ------------c--c-----ccccCCCeEEEEE-eee-cc-ccCHHHHHHHHHHHhhcCCCeEEEEEECCcc--HHHHH
Confidence 0 0 1123344445544 443 22 3457889999999987678999999887532 24455
Q ss_pred HHHhcCCC--CEEEecCCC-cchHHHHHHHcceeEEec-----------hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 160 GLIQKWPV--PSILVPGGS-SNLKYDAFSASRVALCTS-----------GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 160 ~~~~~~~~--~v~v~~g~~-~~~~~~~~~~aDl~i~~S-----------Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
+.+++++. ++.+. |+. .+++.++|+.||+++++| |...+|+|++|+|+|+ ...+.....+
T Consensus 227 ~~~~~~~~~~~v~~~-g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~-~~~~~~~~~i 300 (355)
T cd03799 227 ALIAELGLEDRVTLL-GAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVIS-TDVSGIPELV 300 (355)
T ss_pred HHHHHcCCCCeEEEC-CcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEe-cCCCCcchhh
Confidence 55555433 45554 442 468999999999999976 2355699999999986 4444444444
No 68
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.08 E-value=6.3e-09 Score=92.88 Aligned_cols=163 Identities=15% Similarity=0.092 Sum_probs=102.5
Q ss_pred HHhchhhheecCcchHHHHHHcCC---CeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEc
Q 024872 38 LAAFVDHILCILPNEEAICRLNGL---AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLP 114 (261)
Q Consensus 38 l~~~~d~v~~~~p~e~~~~~~~g~---~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~ 114 (261)
+.+.+|.+++.++...+.+...+. ++.++.|++....... ......++++..+++..+++ +.
T Consensus 162 ~~~~~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~i~-~~ 226 (394)
T cd03794 162 IYRRADAIVVISPGMREYLVRRGVPPEKISVIPNGVDLELFKP--------------PPADESLRKELGLDDKFVVL-YA 226 (394)
T ss_pred HHhcCCEEEEECHHHHHHHHhcCCCcCceEEcCCCCCHHHcCC--------------ccchhhhhhccCCCCcEEEE-Ee
Confidence 456799999999999888864443 4678888876433210 11111133444455555555 44
Q ss_pred CCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCC-CCEEEecCCCcchHHHHHHHcceeEEe
Q 024872 115 GSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWP-VPSILVPGGSSNLKYDAFSASRVALCT 193 (261)
Q Consensus 115 GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~-~~v~v~~g~~~~~~~~~~~~aDl~i~~ 193 (261)
|+.. . .+..+.++++++.+.+. ++++++++|.+. . .+.+++.....+ .++.+.+....+++.++|+.||+++.+
T Consensus 227 G~~~-~-~k~~~~l~~~~~~l~~~-~~~~l~i~G~~~-~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~ 301 (394)
T cd03794 227 GNIG-R-AQGLDTLLEAAALLKDR-PDIRFLIVGDGP-E-KEELKELAKALGLDNVTFLGRVPKEELPELLAAADVGLVP 301 (394)
T ss_pred cCcc-c-ccCHHHHHHHHHHHhhc-CCeEEEEeCCcc-c-HHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCeeEEe
Confidence 5443 2 34577899999999776 789999887653 2 233444333222 246665422246899999999999988
Q ss_pred chH----------HHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 194 SGT----------VAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 194 SGt----------~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
|.. ..+||+++|+|+|+ .+.+.....+
T Consensus 302 ~~~~~~~~~~~p~~~~Ea~~~G~pvi~-~~~~~~~~~~ 338 (394)
T cd03794 302 LKPGPAFEGVSPSKLFEYMAAGKPVLA-SVDGESAELV 338 (394)
T ss_pred ccCcccccccCchHHHHHHHCCCcEEE-ecCCCchhhh
Confidence 742 24699999999986 4444444444
No 69
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.06 E-value=9.1e-09 Score=90.82 Aligned_cols=155 Identities=15% Similarity=0.124 Sum_probs=98.1
Q ss_pred HHhchhhheecCcchHHHHHHcCC-----CeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEE
Q 024872 38 LAAFVDHILCILPNEEAICRLNGL-----AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISL 112 (261)
Q Consensus 38 l~~~~d~v~~~~p~e~~~~~~~g~-----~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIll 112 (261)
+.+.+|.+++.++...+.+.+.+. .+.+.++++..... .. . ... .+.+..++++
T Consensus 135 ~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------~-~~~------~~~~~~~i~~ 193 (359)
T cd03808 135 ALRFTDKVIFQNEDDRDLALKLGIIKKKKTVLIPGSGVDLDRF--SP------------S-PEP------IPEDDPVFLF 193 (359)
T ss_pred HHhhccEEEEcCHHHHHHHHHhcCCCcCceEEecCCCCChhhc--Cc------------c-ccc------cCCCCcEEEE
Confidence 355689999999999888876543 23344544432211 00 0 000 2334555655
Q ss_pred EcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHH-HhcCC--CCEEEecCCCcchHHHHHHHcce
Q 024872 113 LPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGL-IQKWP--VPSILVPGGSSNLKYDAFSASRV 189 (261)
Q Consensus 113 l~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~-~~~~~--~~v~v~~g~~~~~~~~~~~~aDl 189 (261)
+ |+- .. .+..+.++++++.+.++.++++|+++|++.... ..... +.+.+ .++.+. |+ .+++.++|+.||+
T Consensus 194 ~-G~~-~~-~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~--~~~~~~~~~~~~~~~v~~~-g~-~~~~~~~~~~adi 266 (359)
T cd03808 194 V-ARL-LK-DKGIDELLEAARILKAKGPNVRLLLVGDGDEEN--PAAILEIEKLGLEGRVEFL-GF-RDDVPELLAAADV 266 (359)
T ss_pred E-ecc-cc-ccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcch--hhHHHHHHhcCCcceEEEe-ec-cccHHHHHHhccE
Confidence 5 432 22 345778999999998777899999998764332 11211 22222 245555 44 5789999999999
Q ss_pred eEEec-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 190 ALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 190 ~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
++.+| |.+.+|||++|+|+|+ ...+.....+
T Consensus 267 ~i~ps~~e~~~~~~~Ea~~~G~Pvi~-s~~~~~~~~i 302 (359)
T cd03808 267 FVLPSYREGLPRVLLEAMAMGRPVIA-TDVPGCREAV 302 (359)
T ss_pred EEecCcccCcchHHHHHHHcCCCEEE-ecCCCchhhh
Confidence 99998 5667799999999886 4555555544
No 70
>PLN02939 transferase, transferring glycosyl groups
Probab=99.05 E-value=2e-09 Score=107.73 Aligned_cols=120 Identities=13% Similarity=0.143 Sum_probs=86.4
Q ss_pred CcHHHHhhcCCCC---CCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCC-cchHHHHHHHHhcCCC-
Q 024872 93 NSEDFKNKYSVPS---GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPN-RHVENYITGLIQKWPV- 167 (261)
Q Consensus 93 ~~~~~r~~l~l~~---~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~-~~~~~~l~~~~~~~~~- 167 (261)
.+..+++++|+++ +.++|+++ ||..+.| +.+.+++|+..+.+ ++++|+++|++. ..+.+.++.+...++.
T Consensus 762 nK~aLRkelGL~~~d~d~pLIg~V--GRL~~QK-GiDlLleA~~~Ll~--~dvqLVIvGdGp~~~~e~eL~~La~~l~l~ 836 (977)
T PLN02939 762 NKAALRKQLGLSSADASQPLVGCI--TRLVPQK-GVHLIRHAIYKTAE--LGGQFVLLGSSPVPHIQREFEGIADQFQSN 836 (977)
T ss_pred hhHHHHHHhCCCcccccceEEEEe--ecCCccc-ChHHHHHHHHHHhh--cCCEEEEEeCCCcHHHHHHHHHHHHHcCCC
Confidence 3567889999985 45777766 6776655 47789999988865 578999998763 2233445665555543
Q ss_pred -CEEEecCCCcc-hHHHHHHHcceeEEec-----hHHHHHHHHcCCCEEEEEcCChHHH
Q 024872 168 -PSILVPGGSSN-LKYDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTE 219 (261)
Q Consensus 168 -~v~v~~g~~~~-~~~~~~~~aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~ 219 (261)
++.+..++ .+ ..+.+|++||++|.+| |.+.+|||++|+|.|+ .+++++..
T Consensus 837 drV~FlG~~-de~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVV-s~vGGL~D 893 (977)
T PLN02939 837 NNIRLILKY-DEALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIV-RKTGGLND 893 (977)
T ss_pred CeEEEEecc-CHHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEE-ecCCCCcc
Confidence 46665443 22 2468999999999999 8888999999999886 56666544
No 71
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.02 E-value=1.1e-08 Score=92.11 Aligned_cols=154 Identities=12% Similarity=0.125 Sum_probs=98.7
Q ss_pred HhchhhheecCcchHHHH-HHcCCCeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCc
Q 024872 39 AAFVDHILCILPNEEAIC-RLNGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSR 117 (261)
Q Consensus 39 ~~~~d~v~~~~p~e~~~~-~~~g~~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR 117 (261)
.+.+|.+++.++...+.+ +..|.+..++.|++..... ..+...+++++++++. .++++ | |
T Consensus 141 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~ngv~~~~~----------------~~~~~~~~~~~~~~~~-~i~~~-G-~ 201 (363)
T cd04955 141 VKFADRLIADSPGIKEYLKEKYGRDSTYIPYGADHVVS----------------SEEDEILKKYGLEPGR-YYLLV-G-R 201 (363)
T ss_pred HhhccEEEeCCHHHHHHHHHhcCCCCeeeCCCcChhhc----------------chhhhhHHhcCCCCCc-EEEEE-e-c
Confidence 456899999999998888 5566666778887643211 0113344566766544 45544 4 4
Q ss_pred HHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcc--hHHHHHHHHhcCCCCEEEecCCC-cchHHHHHHHcceeEEec
Q 024872 118 LQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRH--VENYITGLIQKWPVPSILVPGGS-SNLKYDAFSASRVALCTS 194 (261)
Q Consensus 118 ~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~--~~~~l~~~~~~~~~~v~v~~g~~-~~~~~~~~~~aDl~i~~S 194 (261)
..+. +....++++++++.. +++++++|++... +.+.+++.. +...++.+. |+. .+++.++++.||+++.+|
T Consensus 202 ~~~~-Kg~~~li~a~~~l~~---~~~l~ivG~~~~~~~~~~~~~~~~-~~~~~V~~~-g~~~~~~~~~~~~~ad~~v~ps 275 (363)
T cd04955 202 IVPE-NNIDDLIEAFSKSNS---GKKLVIVGNADHNTPYGKLLKEKA-AADPRIIFV-GPIYDQELLELLRYAALFYLHG 275 (363)
T ss_pred cccc-CCHHHHHHHHHhhcc---CceEEEEcCCCCcchHHHHHHHHh-CCCCcEEEc-cccChHHHHHHHHhCCEEEeCC
Confidence 4433 457788999888753 7899999875322 222222111 122246655 442 456889999999999988
Q ss_pred ------hHHHHHHHHcCCCEEEEEcCChHH
Q 024872 195 ------GTVAVELQLARLPCVVAYRAHFLT 218 (261)
Q Consensus 195 ------Gt~tlEa~~~G~P~Vv~~~~~~~~ 218 (261)
|.+.+|||++|+|+|+. +.+...
T Consensus 276 ~~~e~~~~~~~EAma~G~PvI~s-~~~~~~ 304 (363)
T cd04955 276 HSVGGTNPSLLEAMAYGCPVLAS-DNPFNR 304 (363)
T ss_pred ccCCCCChHHHHHHHcCCCEEEe-cCCccc
Confidence 45677999999999864 444443
No 72
>PHA01633 putative glycosyl transferase group 1
Probab=99.01 E-value=1.2e-08 Score=92.70 Aligned_cols=162 Identities=14% Similarity=0.131 Sum_probs=100.7
Q ss_pred hHHHHHhchhhheecCcchHHHHHHcCCCeE-EEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCC-CCCcEEE
Q 024872 34 RLKNLAAFVDHILCILPNEEAICRLNGLAAT-FVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVP-SGATVIS 111 (261)
Q Consensus 34 r~~~l~~~~d~v~~~~p~e~~~~~~~g~~~~-~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~-~~~~vIl 111 (261)
.-++....-+.+++.+++..+.+++.|++.. .+-+.+ | +..|.+. .....+++++++.+ ++.++++
T Consensus 85 ~y~~~m~~~~~vIavS~~t~~~L~~~G~~~~i~I~~GV-D-~~~f~p~----------~~~~~~~r~~~~~~~~~~~~i~ 152 (335)
T PHA01633 85 IVNKYLLQDVKFIPNSKFSAENLQEVGLQVDLPVFHGI-N-FKIVENA----------EKLVPQLKQKLDKDFPDTIKFG 152 (335)
T ss_pred HHHHHHhcCCEEEeCCHHHHHHHHHhCCCCceeeeCCC-C-hhhcCcc----------chhhHHHHHHhCcCCCCCeEEE
Confidence 3344322356889999999999988777522 222322 2 1112110 01124566666654 3555666
Q ss_pred EEcCCcHHHHHhhHHHHHHHHHHHhhhCCC----eEEEEEeCCCcchHHHHHHHHhcCCCCEEEec--CCC-cchHHHHH
Q 024872 112 LLPGSRLQEVARMLPIFAKTVELLKDSFPE----LITVIHVAPNRHVENYITGLIQKWPVPSILVP--GGS-SNLKYDAF 184 (261)
Q Consensus 112 ll~GSR~~ei~~~~~~ll~a~~~l~~~~~~----~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~--g~~-~~~~~~~~ 184 (261)
++ ||..+. ++.+.+++|++.+.++.|+ ++++++++ . . +++ .+...++.++. |+. .+++.++|
T Consensus 153 ~v--GRl~~~-KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~--~---~-~~~--l~l~~~V~f~g~~G~~~~~dl~~~y 221 (335)
T PHA01633 153 IV--SGLTKR-KNMDLMLQVFNELNTKYPDIAKKIHFFVISH--K---Q-FTQ--LEVPANVHFVAEFGHNSREYIFAFY 221 (335)
T ss_pred EE--eCCccc-cCHHHHHHHHHHHHHhCCCccccEEEEEEcH--H---H-HHH--cCCCCcEEEEecCCCCCHHHHHHHH
Confidence 65 566543 4678899999999877665 57766642 1 1 222 11222566653 332 46899999
Q ss_pred HHcceeEEec-----hHHHHHHHHcCCCEEEEEcCChHHH
Q 024872 185 SASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTE 219 (261)
Q Consensus 185 ~~aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~ 219 (261)
++||++|.+| |.+.+|||++|+|+|. .+.+++.+
T Consensus 222 ~~aDifV~PS~~EgfGlvlLEAMA~G~PVVa-s~~~~l~E 260 (335)
T PHA01633 222 GAMDFTIVPSGTEGFGMPVLESMAMGTPVIH-QLMPPLDE 260 (335)
T ss_pred HhCCEEEECCccccCCHHHHHHHHcCCCEEE-ccCCCcee
Confidence 9999999999 7788899999999774 66666554
No 73
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.00 E-value=9.2e-09 Score=93.91 Aligned_cols=151 Identities=13% Similarity=0.078 Sum_probs=98.5
Q ss_pred hchhhheecCcchHHHHHHcCCC---eEEEcCCCc-cchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcC
Q 024872 40 AFVDHILCILPNEEAICRLNGLA---ATFVGHPVV-EDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPG 115 (261)
Q Consensus 40 ~~~d~v~~~~p~e~~~~~~~g~~---~~~vG~P~~-d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~G 115 (261)
+.+|.+++.++...+.+.+.|++ +.++.||+. +.+. . +. . -+.++++++.+ |
T Consensus 132 ~~~d~~i~~S~~~~~~~~~~~~~~~ki~vi~N~id~~~~~-~-------------~~--~-------~~~~~~~i~~~-G 187 (359)
T PRK09922 132 TCADYHLAISSGIKEQMMARGISAQRISVIYNPVEIKTII-I-------------PP--P-------ERDKPAVFLYV-G 187 (359)
T ss_pred hcCCEEEEcCHHHHHHHHHcCCCHHHEEEEcCCCCHHHcc-C-------------CC--c-------ccCCCcEEEEE-E
Confidence 67999999999998888877764 678888875 2211 0 00 0 01234566655 4
Q ss_pred CcHHH-HHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCC--CEEEecCCC---cchHHHHHHHcce
Q 024872 116 SRLQE-VARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV--PSILVPGGS---SNLKYDAFSASRV 189 (261)
Q Consensus 116 SR~~e-i~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~--~v~v~~g~~---~~~~~~~~~~aDl 189 (261)
|... -.+.+..+++++..+. ++++++++|++. + ++.+++.+++.+. ++.+. |+. .+.+.++|+.||+
T Consensus 188 -rl~~~~~k~~~~l~~a~~~~~---~~~~l~ivG~g~-~-~~~l~~~~~~~~l~~~v~f~-G~~~~~~~~~~~~~~~~d~ 260 (359)
T PRK09922 188 -RLKFEGQKNVKELFDGLSQTT---GEWQLHIIGDGS-D-FEKCKAYSRELGIEQRIIWH-GWQSQPWEVVQQKIKNVSA 260 (359)
T ss_pred -EEecccCcCHHHHHHHHHhhC---CCeEEEEEeCCc-c-HHHHHHHHHHcCCCCeEEEe-cccCCcHHHHHHHHhcCcE
Confidence 3221 1234566778777663 479999998763 2 3556776765543 46555 432 2457788889999
Q ss_pred eEEec-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 190 ALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 190 ~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
+|.+| |.+.+|||++|+|+|.....++..+.+
T Consensus 261 ~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g~~eiv 297 (359)
T PRK09922 261 LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSGPRDII 297 (359)
T ss_pred EEECCcccCcChHHHHHHHcCCCEEEeCCCCChHHHc
Confidence 99988 567779999999998644255555544
No 74
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.00 E-value=1.3e-08 Score=95.80 Aligned_cols=208 Identities=11% Similarity=0.048 Sum_probs=112.0
Q ss_pred HHhchhhheecCcchH-HHHHHc-CC---CeEEEcCCCccchhhhcCCCCCCCcccccCCCc---HHHHhhcCCCCCCcE
Q 024872 38 LAAFVDHILCILPNEE-AICRLN-GL---AATFVGHPVVEDCLELNLGKGPEPCELKMEGNS---EDFKNKYSVPSGATV 109 (261)
Q Consensus 38 l~~~~d~v~~~~p~e~-~~~~~~-g~---~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~---~~~r~~l~l~~~~~v 109 (261)
..+.+|.+++.++.+. +.+... ++ ++.++.|.+..+. |.+.. ..... ...+++++.++++++
T Consensus 181 ~~~~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpnGvd~~~--f~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 250 (439)
T TIGR02472 181 TLAHASLVITSTHQEIEEQYALYDSYQPERMQVIPPGVDLSR--FYPPQ--------SSEETSEIDNLLAPFLKDPEKPP 250 (439)
T ss_pred HHHhCCEEEECCHHHHHHHHHhccCCCccceEEECCCcChhh--cCCCC--------ccccchhHHHHHHhhccccCCcE
Confidence 4567999999876543 333332 33 4667777764321 22110 00011 112344566677777
Q ss_pred EEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEE-EEeCCCc--chH-------HHHHHHHhcCCC--CEEEecCC-C
Q 024872 110 ISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITV-IHVAPNR--HVE-------NYITGLIQKWPV--PSILVPGG-S 176 (261)
Q Consensus 110 Illl~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~v-i~~~~~~--~~~-------~~l~~~~~~~~~--~v~v~~g~-~ 176 (261)
|+.+ +|..+. ++.+.+++|++.+.+..++.+++ ++|++.. .++ +.+...+++.+. ++.+. |+ .
T Consensus 251 i~~v--Grl~~~-Kg~~~li~A~~~l~~~~~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~-g~~~ 326 (439)
T TIGR02472 251 ILAI--SRPDRR-KNIPSLVEAYGRSPKLQEMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYP-KHHR 326 (439)
T ss_pred EEEE--cCCccc-CCHHHHHHHHHhChhhhhhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEec-CCCC
Confidence 7766 455544 45788999998642211223333 3343221 111 112223344333 35544 43 2
Q ss_pred cchHHHHHHHc----ceeEEec-----hHHHHHHHHcCCCEEEEEcCChHHHHHHH----hcccC-Cccch----hhhhc
Q 024872 177 SNLKYDAFSAS----RVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWFIR----YKAKI-PYISL----PNILL 238 (261)
Q Consensus 177 ~~~~~~~~~~a----Dl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~ia~----~~~~~-~~~~l----~Nil~ 238 (261)
.+++.++|++| |++|.+| |.+.+|||++|+|+|+ ...++..+.+.. .++.. .--++ -+++.
T Consensus 327 ~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~-s~~gg~~eiv~~~~~G~lv~~~d~~~la~~i~~ll~ 405 (439)
T TIGR02472 327 PDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVA-TDDGGPRDIIANCRNGLLVDVLDLEAIASALEDALS 405 (439)
T ss_pred HHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEE-eCCCCcHHHhcCCCcEEEeCCCCHHHHHHHHHHHHh
Confidence 56899999987 9999998 6788899999999886 556666666632 12211 11122 23333
Q ss_pred CCCC-------cccccCCCCCHHHHHHHh
Q 024872 239 DSPI-------IPEALLQACTPDTLTHLL 260 (261)
Q Consensus 239 ~~~i-------~pE~lq~~~~~~~i~~~~ 260 (261)
+++. .-+.+.+.+++++++++.
T Consensus 406 ~~~~~~~~~~~a~~~~~~~fsw~~~~~~~ 434 (439)
T TIGR02472 406 DSSQWQLWSRNGIEGVRRHYSWDAHVEKY 434 (439)
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3322 223455678888887754
No 75
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.00 E-value=7.3e-09 Score=99.06 Aligned_cols=150 Identities=16% Similarity=0.107 Sum_probs=99.9
Q ss_pred HhchhhheecCcchHHHHHH----cC---CCeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEE
Q 024872 39 AAFVDHILCILPNEEAICRL----NG---LAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVIS 111 (261)
Q Consensus 39 ~~~~d~v~~~~p~e~~~~~~----~g---~~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIl 111 (261)
.+.+|.+++.+++..+.+.+ .+ .++.++.|...+.+.. ... ..+..+|+
T Consensus 268 ~~~~D~iI~~S~~~~~~l~~~~~~~~~~~~ki~viP~g~~~~~~~-----------------~~~-------~r~~~~il 323 (500)
T TIGR02918 268 ADYIDFFITATDIQNQILKNQFKKYYNIEPRIYTIPVGSLDELQY-----------------PEQ-------ERKPFSII 323 (500)
T ss_pred hhhCCEEEECCHHHHHHHHHHhhhhcCCCCcEEEEcCCCcccccC-----------------ccc-------ccCCeEEE
Confidence 45589999999887665542 22 1355666654332210 000 11223455
Q ss_pred EEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCC--CEEEecCCCcchHHHHHHHcce
Q 024872 112 LLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV--PSILVPGGSSNLKYDAFSASRV 189 (261)
Q Consensus 112 ll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~--~v~v~~g~~~~~~~~~~~~aDl 189 (261)
.+ ||..+.| ..+.+++|+..+.++.|+++++++|++.. .+.+++++++.+. .+.+. |+ .++.++++.||+
T Consensus 324 ~v--Grl~~~K-g~~~li~A~~~l~~~~p~~~l~i~G~G~~--~~~l~~~i~~~~l~~~V~f~-G~--~~~~~~~~~adv 395 (500)
T TIGR02918 324 TA--SRLAKEK-HIDWLVKAVVKAKKSVPELTFDIYGEGGE--KQKLQKIINENQAQDYIHLK-GH--RNLSEVYKDYEL 395 (500)
T ss_pred EE--ecccccc-CHHHHHHHHHHHHhhCCCeEEEEEECchh--HHHHHHHHHHcCCCCeEEEc-CC--CCHHHHHHhCCE
Confidence 44 5665544 57889999999988889999999987642 3557777766543 35544 54 378999999999
Q ss_pred eEEec-----hHHHHHHHHcCCCEEEEEcCC-hHHHHH
Q 024872 190 ALCTS-----GTVAVELQLARLPCVVAYRAH-FLTEWF 221 (261)
Q Consensus 190 ~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~-~~~~~i 221 (261)
+|.+| |.+.+|||+||+|+|. +..+ +..+.+
T Consensus 396 ~v~pS~~Egfgl~~lEAma~G~PVI~-~dv~~G~~eiI 432 (500)
T TIGR02918 396 YLSASTSEGFGLTLMEAVGSGLGMIG-FDVNYGNPTFI 432 (500)
T ss_pred EEEcCccccccHHHHHHHHhCCCEEE-ecCCCCCHHHc
Confidence 99999 6777799999999886 5443 455555
No 76
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.99 E-value=2.7e-08 Score=89.14 Aligned_cols=160 Identities=14% Similarity=0.076 Sum_probs=101.1
Q ss_pred HHHHhchhhheecCcchHHHHHHc---CCCeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEE
Q 024872 36 KNLAAFVDHILCILPNEEAICRLN---GLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISL 112 (261)
Q Consensus 36 ~~l~~~~d~v~~~~p~e~~~~~~~---g~~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIll 112 (261)
+++.+.+|.+++.++...+.++.. ..++.++.|++..... .. . ..........+.+.++|+.
T Consensus 132 ~~~~~~~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~gi~~~~~--~~------------~-~~~~~~~~~~~~~~~~i~~ 196 (357)
T cd03795 132 RRFLRRADAIVATSPNYAETSPVLRRFRDKVRVIPLGLDPARY--PR------------P-DALEEAIWRRAAGRPFFLF 196 (357)
T ss_pred HHHHHhcCEEEeCcHHHHHHHHHhcCCccceEEecCCCChhhc--CC------------c-chhhhHhhcCCCCCcEEEE
Confidence 345677999999999877765432 2356788888653321 10 0 1100122334455665654
Q ss_pred EcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCC--CCEEEecCCC-cchHHHHHHHcce
Q 024872 113 LPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWP--VPSILVPGGS-SNLKYDAFSASRV 189 (261)
Q Consensus 113 l~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~--~~v~v~~g~~-~~~~~~~~~~aDl 189 (261)
. |+ ..+. +..+.++++++++. +++++++|++. ..+.+++.+++.+ .++.+. |++ .+++..+++.||+
T Consensus 197 ~-G~-~~~~-K~~~~li~a~~~l~----~~~l~i~G~g~--~~~~~~~~~~~~~~~~~V~~~-g~v~~~~~~~~~~~ad~ 266 (357)
T cd03795 197 V-GR-LVYY-KGLDVLLEAAAALP----DAPLVIVGEGP--LEAELEALAAALGLLDRVRFL-GRLDDEEKAALLAACDV 266 (357)
T ss_pred e-cc-cccc-cCHHHHHHHHHhcc----CcEEEEEeCCh--hHHHHHHHHHhcCCcceEEEc-CCCCHHHHHHHHHhCCE
Confidence 4 44 3333 45778899988875 68999988763 2344555554433 256665 443 3568999999999
Q ss_pred eEEec-------hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 190 ALCTS-------GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 190 ~i~~S-------Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
++.+| |.+.+|||++|+|+|. .+.+.....+
T Consensus 267 ~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~-~~~~~~~~~i 304 (357)
T cd03795 267 FVFPSVERSEAFGIVLLEAMAFGKPVIS-TEIGTGGSYV 304 (357)
T ss_pred EEeCCcccccccchHHHHHHHcCCCEEe-cCCCCchhHH
Confidence 99886 5567799999999886 4555554444
No 77
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.98 E-value=2.3e-08 Score=99.27 Aligned_cols=120 Identities=13% Similarity=0.109 Sum_probs=79.8
Q ss_pred HHhhcCC--CCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCc-------c---hHHHHHHHHhc
Q 024872 97 FKNKYSV--PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNR-------H---VENYITGLIQK 164 (261)
Q Consensus 97 ~r~~l~l--~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~-------~---~~~~l~~~~~~ 164 (261)
.++++|+ ++++|+|+.+ ||..+.| +...+++|+.++.+..++++++++||+.. + ..+.+.+++++
T Consensus 538 ~~~~~G~l~d~~kpiIl~V--GRL~~~K-Gid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~ 614 (784)
T TIGR02470 538 NDEHYGYLKDPNKPIIFSM--ARLDRVK-NLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQ 614 (784)
T ss_pred HHHHhCCCCCCCCcEEEEE--eCCCccC-CHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHH
Confidence 3466776 5678888877 7776554 57889999987755456789999987532 0 11223444555
Q ss_pred CCC--CEEEecCCC--cchHHHHHH----HcceeEEec-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 165 WPV--PSILVPGGS--SNLKYDAFS----ASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 165 ~~~--~v~v~~g~~--~~~~~~~~~----~aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
+++ ++.++ |+. ..+..++++ ++|++|.+| |.+.+|||+||+|+|. .+.+++.+.+
T Consensus 615 ~gL~g~V~fl-G~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVA-T~~GG~~EiV 682 (784)
T TIGR02470 615 YQLHGQIRWI-GAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFA-TRFGGPLEII 682 (784)
T ss_pred hCCCCeEEEc-cCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEE-cCCCCHHHHh
Confidence 543 46554 321 224444554 357999999 8888999999999886 6666776665
No 78
>PLN00142 sucrose synthase
Probab=98.95 E-value=3.6e-08 Score=98.04 Aligned_cols=120 Identities=15% Similarity=0.079 Sum_probs=80.6
Q ss_pred HhhcCC--CCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCC-Cc----chH-----HHHHHHHhcC
Q 024872 98 KNKYSV--PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAP-NR----HVE-----NYITGLIQKW 165 (261)
Q Consensus 98 r~~l~l--~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~-~~----~~~-----~~l~~~~~~~ 165 (261)
++++|+ ++++++|+.+ ||..+.| +.+.+++|+.++.+..++++++++|++ .. +.. +.+.++++++
T Consensus 562 ~e~lg~l~~~~kpvIl~V--GRL~~~K-Gid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~l 638 (815)
T PLN00142 562 DEHIGYLKDRKKPIIFSM--ARLDRVK-NLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKY 638 (815)
T ss_pred HHHhCCccCCCCcEEEEE--ecCcccC-CHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHc
Confidence 456776 4567777766 6776544 578899999988766678999999875 11 111 1234455555
Q ss_pred CC--CEEEecC---CC-cchHHHHHH-HcceeEEec-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 166 PV--PSILVPG---GS-SNLKYDAFS-ASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 166 ~~--~v~v~~g---~~-~~~~~~~~~-~aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
+. ++.+++. .. .++++.+++ ++|++|.+| |.+.+|||+||+|+|. +..++..+.+
T Consensus 639 gL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVA-TdvGG~~EIV 705 (815)
T PLN00142 639 NLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFA-TCQGGPAEII 705 (815)
T ss_pred CCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEE-cCCCCHHHHh
Confidence 43 4555432 11 135666666 479999998 8888899999999886 6667777655
No 79
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.95 E-value=1.5e-08 Score=102.81 Aligned_cols=116 Identities=15% Similarity=0.144 Sum_probs=77.2
Q ss_pred hcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhh--CCCeEEEEEeCCCc-c--------hHHHHHHHHhcCCC-
Q 024872 100 KYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDS--FPELITVIHVAPNR-H--------VENYITGLIQKWPV- 167 (261)
Q Consensus 100 ~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~--~~~~~~vi~~~~~~-~--------~~~~l~~~~~~~~~- 167 (261)
++..++++++|+++ +|..+ +++...+++|+..+.+. .+++++ ++|++.. + +...+..+++++++
T Consensus 472 r~~~~pdkpvIL~V--GRL~p-~KGi~~LIeAf~~L~~l~~~~nL~L-IiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~ 547 (1050)
T TIGR02468 472 RFFTNPRKPMILAL--ARPDP-KKNITTLVKAFGECRPLRELANLTL-IMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLY 547 (1050)
T ss_pred hhcccCCCcEEEEE--cCCcc-ccCHHHHHHHHHHhHhhccCCCEEE-EEecCchhhhhhccchHHHHHHHHHHHHhCCC
Confidence 44567788888877 67765 45678899999988643 346664 3443211 0 11224445555544
Q ss_pred -CEEEecCCC-cchHHHHHHHc----ceeEEec-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 168 -PSILVPGGS-SNLKYDAFSAS----RVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 168 -~v~v~~g~~-~~~~~~~~~~a----Dl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
++.+. |+. .++++++|+.| |++|.+| |.+.+|||+||+|+|. ++.+++.+.+
T Consensus 548 g~V~Fl-G~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVA-SdvGG~~EII 610 (1050)
T TIGR02468 548 GQVAYP-KHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVA-TKNGGPVDIH 610 (1050)
T ss_pred CeEEec-CCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEE-eCCCCcHHHh
Confidence 35544 432 56899999988 6999999 8888899999999886 5566666544
No 80
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.93 E-value=1.8e-08 Score=93.26 Aligned_cols=147 Identities=16% Similarity=0.087 Sum_probs=92.5
Q ss_pred HHhchhhheecCcchHHHHHHcC----CCeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEE
Q 024872 38 LAAFVDHILCILPNEEAICRLNG----LAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLL 113 (261)
Q Consensus 38 l~~~~d~v~~~~p~e~~~~~~~g----~~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll 113 (261)
+.+.+|.++++++.+.+.+++.+ .++.++.|++..+. |.+ ... ....+++++++|+++
T Consensus 169 ~~~~ad~vi~~S~~~~~~l~~~~~~~~~~v~vipngvd~~~--f~~------------~~~----~~~~~~~~~~~ilf~ 230 (397)
T TIGR03087 169 IAARFDAATFVSRAEAELFRRLAPEAAGRITAFPNGVDADF--FSP------------DRD----YPNPYPPGKRVLVFT 230 (397)
T ss_pred HHhhCCeEEEcCHHHHHHHHHhCCCCCCCeEEeecccchhh--cCC------------Ccc----ccCCCCCCCcEEEEE
Confidence 45679999999999998887542 24677888765332 211 000 011223455666655
Q ss_pred cCCcHHHHHhhHHHHH----HHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcce
Q 024872 114 PGSRLQEVARMLPIFA----KTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRV 189 (261)
Q Consensus 114 ~GSR~~ei~~~~~~ll----~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl 189 (261)
|+... . ++.+.++ +++..+.+..|+++++++|++.. +.+++.... .++.+. |+ .+++..+|+.||+
T Consensus 231 -G~l~~-~-k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~~---~~~~~l~~~--~~V~~~-G~-v~~~~~~~~~adv 300 (397)
T TIGR03087 231 -GAMDY-W-PNIDAVVWFAERVFPAVRARRPAAEFYIVGAKPS---PAVRALAAL--PGVTVT-GS-VADVRPYLAHAAV 300 (397)
T ss_pred -EecCC-c-cCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCCh---HHHHHhccC--CCeEEe-ee-cCCHHHHHHhCCE
Confidence 54332 1 2333343 56666777779999999987532 223433222 246655 55 4689999999999
Q ss_pred eEEec----hH--HHHHHHHcCCCEEEEE
Q 024872 190 ALCTS----GT--VAVELQLARLPCVVAY 212 (261)
Q Consensus 190 ~i~~S----Gt--~tlEa~~~G~P~Vv~~ 212 (261)
+|.+| |. ..+|||++|+|+|...
T Consensus 301 ~v~Ps~~~eG~~~~~lEAma~G~PVV~t~ 329 (397)
T TIGR03087 301 AVAPLRIARGIQNKVLEAMAMAKPVVASP 329 (397)
T ss_pred EEecccccCCcccHHHHHHHcCCCEEecC
Confidence 99876 32 4669999999998754
No 81
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=98.92 E-value=2e-08 Score=81.60 Aligned_cols=122 Identities=16% Similarity=0.207 Sum_probs=82.2
Q ss_pred cHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhh-CCCeEEEEEeCCCcchHHHHHHHHhcCCC--CEE
Q 024872 94 SEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDS-FPELITVIHVAPNRHVENYITGLIQKWPV--PSI 170 (261)
Q Consensus 94 ~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~-~~~~~~vi~~~~~~~~~~~l~~~~~~~~~--~v~ 170 (261)
++..+...+.++++++|++. |+.. ..+....+++++..+.++ .++++++++|... ....+....+..+. ++.
T Consensus 2 ~~~~~~~~~~~~~~~~il~~-g~~~--~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~i~ 76 (172)
T PF00534_consen 2 KDKLREKLKIPDKKKIILFI-GRLD--PEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGE--YKKELKNLIEKLNLKENII 76 (172)
T ss_dssp HHHHHHHTTT-TTSEEEEEE-SESS--GGGTHHHHHHHHHHHHHHHHTTEEEEEESHCC--HHHHHHHHHHHTTCGTTEE
T ss_pred hHHHHHHcCCCCCCeEEEEE-ecCc--cccCHHHHHHHHHHHHhhcCCCeEEEEEcccc--ccccccccccccccccccc
Confidence 45667788888888878766 3333 235678899999999763 6889999988332 23334555554333 566
Q ss_pred EecCCCcchHHHHHHHcceeEEec-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 171 LVPGGSSNLKYDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 171 v~~g~~~~~~~~~~~~aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
++.....+++.++|+.||+++.+| |.+.+|||++|+|+|+ ...+.....+
T Consensus 77 ~~~~~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~-~~~~~~~e~~ 131 (172)
T PF00534_consen 77 FLGYVPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIA-SDIGGNNEII 131 (172)
T ss_dssp EEESHSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEE-ESSTHHHHHS
T ss_pred ccccccccccccccccceeccccccccccccccccccccccceee-ccccCCceee
Confidence 664421358999999999999997 5666699999999886 5566665444
No 82
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.90 E-value=1.4e-08 Score=90.66 Aligned_cols=163 Identities=12% Similarity=0.026 Sum_probs=103.8
Q ss_pred HHHHhchhhheecCcchHHHHHHc-CC---CeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEE
Q 024872 36 KNLAAFVDHILCILPNEEAICRLN-GL---AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVIS 111 (261)
Q Consensus 36 ~~l~~~~d~v~~~~p~e~~~~~~~-g~---~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIl 111 (261)
..+.+.+|.+++.++...+.+.+. +. ++.++.|++...... ...... +.+...+.+.++|+
T Consensus 135 ~~~~~~~d~~i~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~--------------~~~~~~-~~~~~~~~~~~~i~ 199 (365)
T cd03809 135 RRALRRADAIITVSEATKRDLLRYLGVPPDKIVVIPLGVDPRFRP--------------PPAEAE-VLRALYLLPRPYFL 199 (365)
T ss_pred HHHHHHcCEEEEccHHHHHHHHHHhCcCHHHEEeeccccCccccC--------------CCchHH-HHHHhcCCCCCeEE
Confidence 335667999999999988877553 32 366777776543221 111111 33445556667676
Q ss_pred EEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcC--CCCEEEecCCC-cchHHHHHHHcc
Q 024872 112 LLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKW--PVPSILVPGGS-SNLKYDAFSASR 188 (261)
Q Consensus 112 ll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~--~~~v~v~~g~~-~~~~~~~~~~aD 188 (261)
.+ |+.. . .+..+.+++++..+.+..++++++++|+........ ....++. ..++.+. |+. .+++.++|+.||
T Consensus 200 ~~-G~~~-~-~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~-~~~~~~~~~~~~v~~~-g~~~~~~~~~~~~~~d 274 (365)
T cd03809 200 YV-GTIE-P-RKNLERLLEAFARLPAKGPDPKLVIVGKRGWLNEEL-LARLRELGLGDRVRFL-GYVSDEELAALYRGAR 274 (365)
T ss_pred Ee-CCCc-c-ccCHHHHHHHHHHHHHhcCCCCEEEecCCccccHHH-HHHHHHcCCCCeEEEC-CCCChhHHHHHHhhhh
Confidence 65 4433 2 345788999999998877778999888654332222 2221222 2245555 432 467999999999
Q ss_pred eeEEec-----hHHHHHHHHcCCCEEEEEcCChHHH
Q 024872 189 VALCTS-----GTVAVELQLARLPCVVAYRAHFLTE 219 (261)
Q Consensus 189 l~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~ 219 (261)
+++.+| |.+.+|||++|+|+|. .+.+.+..
T Consensus 275 ~~l~ps~~e~~~~~~~Ea~a~G~pvI~-~~~~~~~e 309 (365)
T cd03809 275 AFVFPSLYEGFGLPVLEAMACGTPVIA-SNISSLPE 309 (365)
T ss_pred hhcccchhccCCCCHHHHhcCCCcEEe-cCCCCccc
Confidence 999987 4566799999999886 55554443
No 83
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.87 E-value=3.6e-08 Score=89.47 Aligned_cols=186 Identities=16% Similarity=0.150 Sum_probs=110.7
Q ss_pred ccchhhhcCCCCeEEEEeCCccccccCCcchHHHH-HhchhhheecCcchHHHHHHcCCC--eE-EEcCCCccchhhhcC
Q 024872 4 AARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNL-AAFVDHILCILPNEEAICRLNGLA--AT-FVGHPVVEDCLELNL 79 (261)
Q Consensus 4 ~~~~~~~~~~ip~~~~yv~p~~waw~~g~~r~~~l-~~~~d~v~~~~p~e~~~~~~~g~~--~~-~vG~P~~d~~~~~~~ 79 (261)
|+|.|.=. |||.+..+..|. +. -.+++ ..++|.+++..-+..+++++.|.+ +. |-|.--.-.+..|.
T Consensus 95 a~~va~~l-giP~I~f~D~e~--a~-----~~~~Lt~Pla~~i~~P~~~~~~~~~~~G~~~~i~~y~G~~E~ayl~~F~- 165 (335)
T PF04007_consen 95 AARVAFGL-GIPSIVFNDTEH--AI-----AQNRLTLPLADVIITPEAIPKEFLKRFGAKNQIRTYNGYKELAYLHPFK- 165 (335)
T ss_pred HHHHHHHh-CCCeEEEecCch--hh-----ccceeehhcCCeeECCcccCHHHHHhcCCcCCEEEECCeeeEEeecCCC-
Confidence 34455444 999976665554 22 22333 567999987777777778888876 44 55532111122222
Q ss_pred CCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHH-HHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHH
Q 024872 80 GKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQ-EVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYI 158 (261)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~-ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l 158 (261)
...++.+++|++ +.+.|++=+.+..+ -.+...+.+.+.+++|.+. .+. +|+.. ...+.
T Consensus 166 -------------Pd~~vl~~lg~~-~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~-~~~-vV~ip-r~~~~---- 224 (335)
T PF04007_consen 166 -------------PDPEVLKELGLD-DEPYIVVRPEAWKASYDNGKKSILPEIIEELEKY-GRN-VVIIP-RYEDQ---- 224 (335)
T ss_pred -------------CChhHHHHcCCC-CCCEEEEEeccccCeeecCccchHHHHHHHHHhh-Cce-EEEec-CCcch----
Confidence 236778899987 45777776666444 1222233455666677654 333 33332 22221
Q ss_pred HHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechHHHHHHHHcCCCEEEEEcCC--hHHHHHHH
Q 024872 159 TGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAH--FLTEWFIR 223 (261)
Q Consensus 159 ~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tlEa~~~G~P~Vv~~~~~--~~~~~ia~ 223 (261)
+...++.+ +.+.+.. -+..+++..||++|+-+||++.||+++|+|+|-++++. ..+.++.+
T Consensus 225 ~~~~~~~~--~~i~~~~--vd~~~Ll~~a~l~Ig~ggTMa~EAA~LGtPaIs~~~g~~~~vd~~L~~ 287 (335)
T PF04007_consen 225 RELFEKYG--VIIPPEP--VDGLDLLYYADLVIGGGGTMAREAALLGTPAISCFPGKLLAVDKYLIE 287 (335)
T ss_pred hhHHhccC--ccccCCC--CCHHHHHHhcCEEEeCCcHHHHHHHHhCCCEEEecCCcchhHHHHHHH
Confidence 12233333 3333221 15568999999999999999999999999999888653 34555543
No 84
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.86 E-value=4.9e-08 Score=91.36 Aligned_cols=155 Identities=15% Similarity=0.090 Sum_probs=101.6
Q ss_pred HhchhhheecCcchHHHHHHc-CC--CeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcC
Q 024872 39 AAFVDHILCILPNEEAICRLN-GL--AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPG 115 (261)
Q Consensus 39 ~~~~d~v~~~~p~e~~~~~~~-g~--~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~G 115 (261)
.+.+|.+++.+.+..+.+++. +. ++.++-+|+... .+.. ... ...++.++|+.+
T Consensus 187 ~~~aD~ii~~S~~~~~~~~~~~~~~~~~~vi~~gvd~~--~~~~------------~~~-------~~~~~~~~il~v-- 243 (419)
T cd03806 187 GSFADVVMVNSTWTRNHIRSLWKRNTKPSIVYPPCDVE--ELLK------------LPL-------DEKTRENQILSI-- 243 (419)
T ss_pred hhcCCEEEECCHHHHHHHHHHhCcCCCcEEEcCCCCHH--Hhcc------------ccc-------ccccCCcEEEEE--
Confidence 567999999999998888764 33 456666665311 1110 000 112345666665
Q ss_pred CcHHHHHhhHHHHHHHHHHHhhhCC-----CeEEEEEeCCCc----chHHHHHHHHhcCCC--CEEEecCCCcchHHHHH
Q 024872 116 SRLQEVARMLPIFAKTVELLKDSFP-----ELITVIHVAPNR----HVENYITGLIQKWPV--PSILVPGGSSNLKYDAF 184 (261)
Q Consensus 116 SR~~ei~~~~~~ll~a~~~l~~~~~-----~~~~vi~~~~~~----~~~~~l~~~~~~~~~--~v~v~~g~~~~~~~~~~ 184 (261)
+|... +++...+++|+..+.+..| +++++++|++.. .+.+.++++++++++ ++.+......+++.++|
T Consensus 244 gr~~~-~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l 322 (419)
T cd03806 244 AQFRP-EKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEEL 322 (419)
T ss_pred EeecC-CCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHH
Confidence 34432 3457789999999987655 499999987532 133446666665544 46666432257899999
Q ss_pred HHcceeEEec-----hHHHHHHHHcCCCEEEEEcCChH
Q 024872 185 SASRVALCTS-----GTVAVELQLARLPCVVAYRAHFL 217 (261)
Q Consensus 185 ~~aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~ 217 (261)
+.||++|.+| |.+.+|+|++|+|+|+...+++.
T Consensus 323 ~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~ 360 (419)
T cd03806 323 STASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL 360 (419)
T ss_pred HhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCc
Confidence 9999999988 77788999999998864433433
No 85
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=98.85 E-value=1.5e-07 Score=87.72 Aligned_cols=155 Identities=13% Similarity=0.051 Sum_probs=99.7
Q ss_pred HHhchhhheecCcchHHHHHH-cCC---CeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEE
Q 024872 38 LAAFVDHILCILPNEEAICRL-NGL---AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLL 113 (261)
Q Consensus 38 l~~~~d~v~~~~p~e~~~~~~-~g~---~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll 113 (261)
+.+.+|.+++.++...+++++ .+. ++.++.+++..... . .. ...++...|+.+
T Consensus 180 ~~~~~d~ii~~S~~~~~~l~~~~~~~~~ki~vi~~gv~~~~~--~--------------~~-------~~~~~~~~il~~ 236 (407)
T cd04946 180 LLSSLDAVFPCSEQGRNYLQKRYPAYKEKIKVSYLGVSDPGI--I--------------SK-------PSKDDTLRIVSC 236 (407)
T ss_pred HHhcCCEEEECCHHHHHHHHHHCCCccccEEEEECCcccccc--c--------------CC-------CCCCCCEEEEEe
Confidence 457799999999999888764 332 34566666543211 0 00 112344555554
Q ss_pred cCCcHHHHHhhHHHHHHHHHHHhhhCC--CeEEEEEeCCCcchHHHHHHHHhcCCC--CEEEecCCC-cchHHHHHHH--
Q 024872 114 PGSRLQEVARMLPIFAKTVELLKDSFP--ELITVIHVAPNRHVENYITGLIQKWPV--PSILVPGGS-SNLKYDAFSA-- 186 (261)
Q Consensus 114 ~GSR~~ei~~~~~~ll~a~~~l~~~~~--~~~~vi~~~~~~~~~~~l~~~~~~~~~--~v~v~~g~~-~~~~~~~~~~-- 186 (261)
||....| ..+.+++++.++.+..| +++++++|++. ..+.+++.+++.+. ++.+. |++ .+++.++|+.
T Consensus 237 --Grl~~~K-g~~~li~a~~~l~~~~p~~~l~~~iiG~g~--~~~~l~~~~~~~~~~~~V~f~-G~v~~~e~~~~~~~~~ 310 (407)
T cd04946 237 --SYLVPVK-RVDLIIKALAALAKARPSIKIKWTHIGGGP--LEDTLKELAESKPENISVNFT-GELSNSEVYKLYKENP 310 (407)
T ss_pred --ecccccc-CHHHHHHHHHHHHHhCCCceEEEEEEeCch--HHHHHHHHHHhcCCCceEEEe-cCCChHHHHHHHhhcC
Confidence 4444444 47889999999988766 45667777653 23446666654433 35554 554 3478889875
Q ss_pred cceeEEec-----hHHHHHHHHcCCCEEEEEcCChHHHHHH
Q 024872 187 SRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWFI 222 (261)
Q Consensus 187 aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~ia 222 (261)
+|+++.+| |.+.+|||++|+|+|. .+.++..+.+.
T Consensus 311 ~~v~v~~S~~Eg~p~~llEAma~G~PVIa-s~vgg~~e~i~ 350 (407)
T cd04946 311 VDVFVNLSESEGLPVSIMEAMSFGIPVIA-TNVGGTPEIVD 350 (407)
T ss_pred CCEEEeCCccccccHHHHHHHHcCCCEEe-CCCCCcHHHhc
Confidence 78888888 5567799999999886 56777776663
No 86
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.81 E-value=8.1e-08 Score=87.47 Aligned_cols=153 Identities=16% Similarity=0.137 Sum_probs=98.9
Q ss_pred HhchhhheecCcchHHHHHHc-CC--CeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcC
Q 024872 39 AAFVDHILCILPNEEAICRLN-GL--AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPG 115 (261)
Q Consensus 39 ~~~~d~v~~~~p~e~~~~~~~-g~--~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~G 115 (261)
.+.+|.+++.++...+.+.+. +. ++.++.+++...... +. . ..+.+...++.+
T Consensus 155 ~~~~d~ii~~s~~~~~~l~~~~~~~~~v~~ip~g~~~~~~~--------------~~-~-------~~~~~~~~i~~v-- 210 (372)
T cd04949 155 LDKVDGVIVATEQQKQDLQKQFGNYNPIYTIPVGSIDPLKL--------------PA-Q-------FKQRKPHKIITV-- 210 (372)
T ss_pred hhhCCEEEEccHHHHHHHHHHhCCCCceEEEcccccChhhc--------------cc-c-------hhhcCCCeEEEE--
Confidence 456899999999887776543 22 255666665433210 00 0 012234455554
Q ss_pred CcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCC--CEEEecCCCcchHHHHHHHcceeEEe
Q 024872 116 SRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV--PSILVPGGSSNLKYDAFSASRVALCT 193 (261)
Q Consensus 116 SR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~--~v~v~~g~~~~~~~~~~~~aDl~i~~ 193 (261)
||... .+..+.+++++.++.++.|+++++++|.+.. ...++...++.+. .+.+. |+ .+++.++|+.||++|.+
T Consensus 211 grl~~-~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~--~~~~~~~~~~~~~~~~v~~~-g~-~~~~~~~~~~ad~~v~~ 285 (372)
T cd04949 211 ARLAP-EKQLDQLIKAFAKVVKQVPDATLDIYGYGDE--EEKLKELIEELGLEDYVFLK-GY-TRDLDEVYQKAQLSLLT 285 (372)
T ss_pred EccCc-ccCHHHHHHHHHHHHHhCCCcEEEEEEeCch--HHHHHHHHHHcCCcceEEEc-CC-CCCHHHHHhhhhEEEec
Confidence 34433 3457789999999988889999999887643 2334555554433 34444 54 57899999999999999
Q ss_pred c-----hHHHHHHHHcCCCEEEEEcCC-hHHHHH
Q 024872 194 S-----GTVAVELQLARLPCVVAYRAH-FLTEWF 221 (261)
Q Consensus 194 S-----Gt~tlEa~~~G~P~Vv~~~~~-~~~~~i 221 (261)
| |.+.+|||++|+|+|. +..+ +....+
T Consensus 286 S~~Eg~~~~~lEAma~G~PvI~-~~~~~g~~~~v 318 (372)
T cd04949 286 SQSEGFGLSLMEALSHGLPVIS-YDVNYGPSEII 318 (372)
T ss_pred ccccccChHHHHHHhCCCCEEE-ecCCCCcHHHc
Confidence 9 5567799999999886 4433 444444
No 87
>PLN02949 transferase, transferring glycosyl groups
Probab=98.78 E-value=1.1e-07 Score=90.27 Aligned_cols=152 Identities=9% Similarity=-0.042 Sum_probs=99.3
Q ss_pred hchhhheecCcchHHHHHHc-CC--CeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCC
Q 024872 40 AFVDHILCILPNEEAICRLN-GL--AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGS 116 (261)
Q Consensus 40 ~~~d~v~~~~p~e~~~~~~~-g~--~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GS 116 (261)
+.+|.+++.+.+..+.+++. +. ++.++-+|+.... +.. ... .-+++++.++.+ +
T Consensus 219 ~~ad~ii~nS~~t~~~l~~~~~~~~~i~vvyp~vd~~~--~~~------------~~~-------~~~~~~~~il~v--G 275 (463)
T PLN02949 219 RCAHLAMVNSSWTKSHIEALWRIPERIKRVYPPCDTSG--LQA------------LPL-------ERSEDPPYIISV--A 275 (463)
T ss_pred CCCCEEEECCHHHHHHHHHHcCCCCCeEEEcCCCCHHH--ccc------------CCc-------cccCCCCEEEEE--E
Confidence 56899999999998888663 33 3455666653211 100 000 002344566665 3
Q ss_pred cHHHHHhhHHHHHHHHHHHhhh----CCCeEEEEEeCCCc----chHHHHHHHHhcCCC--CEEEecCCCcchHHHHHHH
Q 024872 117 RLQEVARMLPIFAKTVELLKDS----FPELITVIHVAPNR----HVENYITGLIQKWPV--PSILVPGGSSNLKYDAFSA 186 (261)
Q Consensus 117 R~~ei~~~~~~ll~a~~~l~~~----~~~~~~vi~~~~~~----~~~~~l~~~~~~~~~--~v~v~~g~~~~~~~~~~~~ 186 (261)
|... +++.+.+++|+.++.++ .++++++++|+... .+.+.+++.++++++ ++.+......+++.++|+.
T Consensus 276 R~~~-~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~ 354 (463)
T PLN02949 276 QFRP-EKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGG 354 (463)
T ss_pred eeec-cCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHh
Confidence 5443 45678899999887642 46899999987521 122346666665544 4666633224689999999
Q ss_pred cceeEEec-----hHHHHHHHHcCCCEEEEEcCC
Q 024872 187 SRVALCTS-----GTVAVELQLARLPCVVAYRAH 215 (261)
Q Consensus 187 aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~ 215 (261)
||+++.+| |.+.+|||++|+|+|+...++
T Consensus 355 a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gG 388 (463)
T PLN02949 355 AVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAG 388 (463)
T ss_pred CcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCC
Confidence 99999887 888889999999999765443
No 88
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.73 E-value=1.9e-07 Score=85.91 Aligned_cols=151 Identities=13% Similarity=0.037 Sum_probs=92.1
Q ss_pred HHHHhchhhheecCcchHHHHHHcCCCeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcC
Q 024872 36 KNLAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPG 115 (261)
Q Consensus 36 ~~l~~~~d~v~~~~p~e~~~~~~~g~~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~G 115 (261)
+++.+.+|.|+++++.-.+.+++.+.++++++|.+.... |... .......+. ....++++|+++ |
T Consensus 148 ~~~~~~ad~vi~~S~~l~~~~~~~~~~i~~i~ngvd~~~--f~~~----------~~~~~~~~~--~~~~~~~~i~y~-G 212 (373)
T cd04950 148 RRLLKRADLVFTTSPSLYEAKRRLNPNVVLVPNGVDYEH--FAAA----------RDPPPPPAD--LAALPRPVIGYY-G 212 (373)
T ss_pred HHHHHhCCEEEECCHHHHHHHhhCCCCEEEcccccCHHH--hhcc----------cccCCChhH--HhcCCCCEEEEE-e
Confidence 346778999999999998888887777888998875332 2110 000000011 112356666665 5
Q ss_pred CcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEec-
Q 024872 116 SRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTS- 194 (261)
Q Consensus 116 SR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~S- 194 (261)
+... +...+ .+..+.+..|+++|+++|.+.... + ... ..+. .++++++....++++.+|+.||+++.++
T Consensus 213 ~l~~--~~d~~----ll~~la~~~p~~~~vliG~~~~~~-~-~~~-~~~~-~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~ 282 (373)
T cd04950 213 AIAE--WLDLE----LLEALAKARPDWSFVLIGPVDVSI-D-PSA-LLRL-PNVHYLGPKPYKELPAYLAGFDVAILPFR 282 (373)
T ss_pred cccc--ccCHH----HHHHHHHHCCCCEEEEECCCcCcc-C-hhH-hccC-CCEEEeCCCCHHHHHHHHHhCCEEecCCc
Confidence 5543 33233 333444456899999998752111 1 111 1222 2677764322478999999999999875
Q ss_pred ---------hHHHHHHHHcCCCEEEE
Q 024872 195 ---------GTVAVELQLARLPCVVA 211 (261)
Q Consensus 195 ---------Gt~tlEa~~~G~P~Vv~ 211 (261)
+...+|+|++|+|+|.+
T Consensus 283 ~~~~~~~~~P~Kl~EylA~G~PVVat 308 (373)
T cd04950 283 LNELTRATSPLKLFEYLAAGKPVVAT 308 (373)
T ss_pred cchhhhcCCcchHHHHhccCCCEEec
Confidence 23456999999999853
No 89
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.72 E-value=2.2e-07 Score=84.04 Aligned_cols=143 Identities=18% Similarity=0.106 Sum_probs=92.7
Q ss_pred HhchhhheecCcchHHHHHH-cCCCeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCc
Q 024872 39 AAFVDHILCILPNEEAICRL-NGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSR 117 (261)
Q Consensus 39 ~~~~d~v~~~~p~e~~~~~~-~g~~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR 117 (261)
.+.+|.+++.++...+.+++ .+.+..++.||+..+. +.. . +...+.++.. | |
T Consensus 151 ~~~~d~ii~~S~~~~~~~~~~~~~~~~vi~~~~d~~~--~~~------------~-----------~~~~~~il~~-G-~ 203 (351)
T cd03804 151 AARVDYFIANSRFVARRIKKYYGRDATVIYPPVDTDR--FTP------------A-----------EEKEDYYLSV-G-R 203 (351)
T ss_pred hcCCCEEEECCHHHHHHHHHHhCCCcEEECCCCCHhh--cCc------------C-----------CCCCCEEEEE-E-c
Confidence 36799999999999888854 3556667777753221 110 0 1123445544 4 3
Q ss_pred HHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCC-cchHHHHHHHcceeEEec--
Q 024872 118 LQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGS-SNLKYDAFSASRVALCTS-- 194 (261)
Q Consensus 118 ~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~-~~~~~~~~~~aDl~i~~S-- 194 (261)
..+. +..+.++++++++ + .+++++|++.. .+.+++ ....++.+. |++ .+++.++|++||+++.+|
T Consensus 204 ~~~~-K~~~~li~a~~~~----~-~~l~ivG~g~~--~~~l~~---~~~~~V~~~-g~~~~~~~~~~~~~ad~~v~ps~e 271 (351)
T cd03804 204 LVPY-KRIDLAIEAFNKL----G-KRLVVIGDGPE--LDRLRA---KAGPNVTFL-GRVSDEELRDLYARARAFLFPAEE 271 (351)
T ss_pred Cccc-cChHHHHHHHHHC----C-CcEEEEECChh--HHHHHh---hcCCCEEEe-cCCCHHHHHHHHHhCCEEEECCcC
Confidence 3333 4577888888765 3 78888887632 233443 223357766 443 446999999999999987
Q ss_pred --hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 195 --GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 195 --Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
|.+.+|+|++|+|+|.. ..++..+.+
T Consensus 272 ~~g~~~~Eama~G~Pvi~~-~~~~~~e~i 299 (351)
T cd03804 272 DFGIVPVEAMASGTPVIAY-GKGGALETV 299 (351)
T ss_pred CCCchHHHHHHcCCCEEEe-CCCCCccee
Confidence 77888999999999864 444444433
No 90
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.71 E-value=4.7e-07 Score=80.59 Aligned_cols=209 Identities=11% Similarity=-0.003 Sum_probs=114.8
Q ss_pred hhcCCCCeEEEEeCCccccccCCcchHHHHHhchhhheecCcchHHHHHHcCCCeEEEcCCCccchhhhcCCCCCCCccc
Q 024872 9 HERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGPEPCEL 88 (261)
Q Consensus 9 ~~~~~ip~~~~yv~p~~waw~~g~~r~~~l~~~~d~v~~~~p~e~~~~~~~g~~~~~vG~P~~d~~~~~~~~~~~~~~~~ 88 (261)
++..++|++ +.++...+.+.. +........+.+++.++...+.+... .++.++.|++.... +.
T Consensus 103 ~~~~~~~~v-~~~h~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~~vi~ngvd~~~--~~---------- 165 (335)
T cd03802 103 ARPLPVPVV-TTLHGPPDPELL---KLYYAARPDVPFVSISDAQRRPWPPL-PWVATVHNGIDLDD--YP---------- 165 (335)
T ss_pred hcccCCCEE-EEecCCCCcccc---hHHHhhCcCCeEEEecHHHHhhcccc-cccEEecCCcChhh--CC----------
Confidence 334488885 443443333321 22223445777777777776666543 45677777764221 10
Q ss_pred ccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcC---
Q 024872 89 KMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKW--- 165 (261)
Q Consensus 89 ~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~--- 165 (261)
. .+.+++.|+++ +|..+.|+ ...+++++++ .+++++++|++... +.+.....+.
T Consensus 166 -----~--------~~~~~~~i~~~--Gr~~~~Kg-~~~li~~~~~-----~~~~l~i~G~~~~~--~~~~~~~~~~~~~ 222 (335)
T cd03802 166 -----F--------RGPKGDYLLFL--GRISPEKG-PHLAIRAARR-----AGIPLKLAGPVSDP--DYFYREIAPELLD 222 (335)
T ss_pred -----C--------CCCCCCEEEEE--EeeccccC-HHHHHHHHHh-----cCCeEEEEeCCCCH--HHHHHHHHHhccc
Confidence 0 12234556655 45554444 5667776543 47889988876321 2223322222
Q ss_pred CCCEEEecCCC-cchHHHHHHHcceeEEec------hHHHHHHHHcCCCEEEEEcCChHHHHHHH----hcccCCccchh
Q 024872 166 PVPSILVPGGS-SNLKYDAFSASRVALCTS------GTVAVELQLARLPCVVAYRAHFLTEWFIR----YKAKIPYISLP 234 (261)
Q Consensus 166 ~~~v~v~~g~~-~~~~~~~~~~aDl~i~~S------Gt~tlEa~~~G~P~Vv~~~~~~~~~~ia~----~~~~~~~~~l~ 234 (261)
..++.+. |+. .+++.++|+.||+++.+| |.+.+|||++|+|+|. ...++..+.+.. .++. +.-.+.
T Consensus 223 ~~~v~~~-G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~-~~~~~~~e~i~~~~~g~l~~-~~~~l~ 299 (335)
T cd03802 223 GPDIEYL-GEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIA-FRRGAVPEVVEDGVTGFLVD-SVEELA 299 (335)
T ss_pred CCcEEEe-CCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEE-eCCCCchhheeCCCcEEEeC-CHHHHH
Confidence 2356665 543 346789999999999876 4566799999999886 455555554432 1111 122222
Q ss_pred hhhc-----CCCCcccccCCCCCHHHHHHHh
Q 024872 235 NILL-----DSPIIPEALLQACTPDTLTHLL 260 (261)
Q Consensus 235 Nil~-----~~~i~pE~lq~~~~~~~i~~~~ 260 (261)
+-+. +++-.-+...+.++++.++++.
T Consensus 300 ~~l~~l~~~~~~~~~~~~~~~~s~~~~~~~~ 330 (335)
T cd03802 300 AAVARADRLDRAACRRRAERRFSAARMVDDY 330 (335)
T ss_pred HHHHHHhccHHHHHHHHHHHhCCHHHHHHHH
Confidence 2221 1122334556777777777653
No 91
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.65 E-value=3.2e-07 Score=82.77 Aligned_cols=105 Identities=8% Similarity=-0.012 Sum_probs=63.9
Q ss_pred CCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHH
Q 024872 104 PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDA 183 (261)
Q Consensus 104 ~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~ 183 (261)
+.+++.|++.+||.+.. .++++++. .+++++++ ++. .... . ++..++.+. ++..+++.++
T Consensus 185 ~~~~~~iLv~~g~~~~~------~l~~~l~~----~~~~~~i~-~~~-~~~~----~---~~~~~v~~~-~~~~~~~~~~ 244 (321)
T TIGR00661 185 NYGEDYILVYIGFEYRY------KILELLGK----IANVKFVC-YSY-EVAK----N---SYNENVEIR-RITTDNFKEL 244 (321)
T ss_pred cCCCCcEEEECCcCCHH------HHHHHHHh----CCCeEEEE-eCC-CCCc----c---ccCCCEEEE-ECChHHHHHH
Confidence 33567788888887742 24444433 35555443 222 1111 1 112255555 3322589999
Q ss_pred HHHcceeEEechHHHH-HHHHcCCCEEEEEcCChHHH-HHHHhcccC
Q 024872 184 FSASRVALCTSGTVAV-ELQLARLPCVVAYRAHFLTE-WFIRYKAKI 228 (261)
Q Consensus 184 ~~~aDl~i~~SGt~tl-Ea~~~G~P~Vv~~~~~~~~~-~ia~~~~~~ 228 (261)
|..||++|+.+|..|+ |++++|+|+|++...+.... ..|+.+.+.
T Consensus 245 l~~ad~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~ 291 (321)
T TIGR00661 245 IKNAELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDL 291 (321)
T ss_pred HHhCCEEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHC
Confidence 9999999999998888 99999999998754332222 346666543
No 92
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.59 E-value=3.5e-07 Score=81.82 Aligned_cols=115 Identities=16% Similarity=0.216 Sum_probs=69.9
Q ss_pred CcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHH
Q 024872 107 ATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSA 186 (261)
Q Consensus 107 ~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~ 186 (261)
+.+++.+||+-.. .+.+++++ .++.++++. |++.. +. + ..++++.. +...++.++|++
T Consensus 193 ~~iLv~~gg~~~~-------~~~~~l~~----~~~~~~~v~-g~~~~-~~--~------~~ni~~~~-~~~~~~~~~m~~ 250 (318)
T PF13528_consen 193 PKILVYFGGGGPG-------DLIEALKA----LPDYQFIVF-GPNAA-DP--R------PGNIHVRP-FSTPDFAELMAA 250 (318)
T ss_pred CEEEEEeCCCcHH-------HHHHHHHh----CCCCeEEEE-cCCcc-cc--c------CCCEEEee-cChHHHHHHHHh
Confidence 3455555554332 24444444 367788887 44321 11 1 22566553 213689999999
Q ss_pred cceeEEechHHHH-HHHHcCCCEEEEEcCChHHHHH-HHhcccCCccchhhhhcCCCCcccc
Q 024872 187 SRVALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWF-IRYKAKIPYISLPNILLDSPIIPEA 246 (261)
Q Consensus 187 aDl~i~~SGt~tl-Ea~~~G~P~Vv~~~~~~~~~~i-a~~~~~~~~~~l~Nil~~~~i~pE~ 246 (261)
||++|+.+|-+|+ |++++|+|++++...+...... |+++- -.|+...+..+.+.||-
T Consensus 251 ad~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~---~~G~~~~~~~~~~~~~~ 309 (318)
T PF13528_consen 251 ADLVISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLE---ELGLGIVLSQEDLTPER 309 (318)
T ss_pred CCEEEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHH---HCCCeEEcccccCCHHH
Confidence 9999999999988 9999999999876554444333 66665 33445555434444443
No 93
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.58 E-value=6.3e-07 Score=82.84 Aligned_cols=110 Identities=12% Similarity=0.132 Sum_probs=66.8
Q ss_pred CCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHH
Q 024872 105 SGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAF 184 (261)
Q Consensus 105 ~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~ 184 (261)
.++++|++..||-.......+..+++ .+.+ .+.++++.+|+..+. +.+ .+...++.+. ++ . +..++|
T Consensus 223 ~~~~~v~vs~Gs~~~~~~~~~~~~~~---al~~--~~~~~i~~~g~~~~~-~~~----~~~~~~v~~~-~~-~-p~~~ll 289 (392)
T TIGR01426 223 DGRPVVLISLGTVFNNQPSFYRTCVE---AFRD--LDWHVVLSVGRGVDP-ADL----GELPPNVEVR-QW-V-PQLEIL 289 (392)
T ss_pred CCCCEEEEecCccCCCCHHHHHHHHH---HHhc--CCCeEEEEECCCCCh-hHh----ccCCCCeEEe-CC-C-CHHHHH
Confidence 56788888888742211112222333 3332 356788877754332 112 2223356554 33 2 335899
Q ss_pred HHcceeEEechHHHH-HHHHcCCCEEEEEcCChHHHHHHHhcccC
Q 024872 185 SASRVALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFIRYKAKI 228 (261)
Q Consensus 185 ~~aDl~i~~SGt~tl-Ea~~~G~P~Vv~~~~~~~~~~ia~~~~~~ 228 (261)
+.||++|+.+|+.|+ |++++|+|+|+++...- ....++++.+.
T Consensus 290 ~~~~~~I~hgG~~t~~Eal~~G~P~v~~p~~~d-q~~~a~~l~~~ 333 (392)
T TIGR01426 290 KKADAFITHGGMNSTMEALFNGVPMVAVPQGAD-QPMTARRIAEL 333 (392)
T ss_pred hhCCEEEECCCchHHHHHHHhCCCEEecCCccc-HHHHHHHHHHC
Confidence 999999999999866 99999999999865532 33456666543
No 94
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=98.57 E-value=9.9e-08 Score=90.45 Aligned_cols=106 Identities=20% Similarity=0.202 Sum_probs=71.0
Q ss_pred hhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCC----eEEEEEeCCC----cc---hHHHHHHHHhcC--
Q 024872 99 NKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPE----LITVIHVAPN----RH---VENYITGLIQKW-- 165 (261)
Q Consensus 99 ~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~----~~~vi~~~~~----~~---~~~~l~~~~~~~-- 165 (261)
+..+..+++++|+.. +|....| +.+.+++|++.+.+++|+ +++++++++. .. +.+.+++.+.+.
T Consensus 256 ~~~~~~~~~~~il~v--gRl~~~K-gi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~ 332 (460)
T cd03788 256 ELRERLGGRKLIVGV--DRLDYSK-GIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRING 332 (460)
T ss_pred HHHHhcCCCEEEEEe--cCccccC-CHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHh
Confidence 344556677777655 6776555 477899999999887776 5677776542 11 222333332221
Q ss_pred --C----CCEEEecCC-CcchHHHHHHHcceeEEec-----hHHHHHHHHcCCC
Q 024872 166 --P----VPSILVPGG-SSNLKYDAFSASRVALCTS-----GTVAVELQLARLP 207 (261)
Q Consensus 166 --~----~~v~v~~g~-~~~~~~~~~~~aDl~i~~S-----Gt~tlEa~~~G~P 207 (261)
+ .++.++.+. ..+++.++|++||++|.+| |.+.+|+|+||+|
T Consensus 333 ~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p 386 (460)
T cd03788 333 KFGTLDWTPVRYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDD 386 (460)
T ss_pred ccCCCCceeEEEEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecC
Confidence 1 134455443 2578999999999999999 6677899999999
No 95
>PRK10125 putative glycosyl transferase; Provisional
Probab=98.53 E-value=3e-07 Score=85.78 Aligned_cols=147 Identities=7% Similarity=-0.008 Sum_probs=87.8
Q ss_pred chhhheecCcchHHHHHHc-C-CCeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcH
Q 024872 41 FVDHILCILPNEEAICRLN-G-LAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRL 118 (261)
Q Consensus 41 ~~d~v~~~~p~e~~~~~~~-g-~~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~ 118 (261)
.++.+++.+....+.+... + .++.++.|++......+.. ..... ..++++++|+++ |...
T Consensus 190 ~~~~iV~~S~~l~~~~~~~~~~~~i~vI~NGid~~~~~~~~-------------~~~~~----~~~~~~~~il~v-~~~~ 251 (405)
T PRK10125 190 LGCQFISPSQHVADAFNSLYGPGRCRIINNGIDMATEAILA-------------ELPPV----RETQGKPKIAVV-AHDL 251 (405)
T ss_pred cCcEEEEcCHHHHHHHHHHcCCCCEEEeCCCcCcccccccc-------------ccccc----ccCCCCCEEEEE-Eecc
Confidence 3467777777766666532 3 3577888887522111100 00111 113466677665 3211
Q ss_pred HHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCC--cchHHHHHHHcceeEEec--
Q 024872 119 QEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGS--SNLKYDAFSASRVALCTS-- 194 (261)
Q Consensus 119 ~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~--~~~~~~~~~~aDl~i~~S-- 194 (261)
..-.+....+++|+..+. ++++++++|.+... . . .++..+ |+. ..++.++|++||++|.+|
T Consensus 252 ~~~~Kg~~~li~A~~~l~---~~~~L~ivG~g~~~--~--~-------~~v~~~-g~~~~~~~l~~~y~~aDvfV~pS~~ 316 (405)
T PRK10125 252 RYDGKTDQQLVREMMALG---DKIELHTFGKFSPF--T--A-------GNVVNH-GFETDKRKLMSALNQMDALVFSSRV 316 (405)
T ss_pred ccCCccHHHHHHHHHhCC---CCeEEEEEcCCCcc--c--c-------cceEEe-cCcCCHHHHHHHHHhCCEEEECCcc
Confidence 111234567888887763 57899988864321 1 1 123322 221 357899999999999999
Q ss_pred ---hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 195 ---GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 195 ---Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
|.+.+|||+||+|+|. ++.+++.+.+
T Consensus 317 Egfp~vilEAmA~G~PVVa-t~~gG~~Eiv 345 (405)
T PRK10125 317 DNYPLILCEALSIGVPVIA-THSDAAREVL 345 (405)
T ss_pred ccCcCHHHHHHHcCCCEEE-eCCCChHHhE
Confidence 7788899999999885 6777777655
No 96
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.40 E-value=6.3e-06 Score=72.99 Aligned_cols=179 Identities=14% Similarity=0.162 Sum_probs=109.2
Q ss_pred cchhhhcCCCCeEEEEeCCccccccCCcchHHHH-HhchhhheecCcchHHHHHHcCCC-eEEEcCCCccchhhhcCCCC
Q 024872 5 ARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNL-AAFVDHILCILPNEEAICRLNGLA-ATFVGHPVVEDCLELNLGKG 82 (261)
Q Consensus 5 ~~~~~~~~~ip~~~~yv~p~~waw~~g~~r~~~l-~~~~d~v~~~~p~e~~~~~~~g~~-~~~vG~P~~d~~~~~~~~~~ 82 (261)
+|.+.-. |||.++.-..|+. - -.+++ ..+||.+++--......+...|.+ ..++|.+...+....+.
T Consensus 97 ~rvafgL-g~psIi~~D~ehA--~-----~qnkl~~Pla~~ii~P~~~~~~~~~~~G~~p~~i~~~~giae~~~v~~--- 165 (346)
T COG1817 97 PRVAFGL-GIPSIIFVDNEHA--E-----AQNKLTLPLADVIITPEAIDEEELLDFGADPNKISGYNGIAELANVYG--- 165 (346)
T ss_pred hhHHhhc-CCceEEecCChhH--H-----HHhhcchhhhhheecccccchHHHHHhCCCccceecccceeEEeeccc---
Confidence 4555555 9999654445552 1 23554 678898876666666666677764 56777775543322110
Q ss_pred CCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHH-HHh--hHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHH
Q 024872 83 PEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQE-VAR--MLPIFAKTVELLKDSFPELITVIHVAPNRHVENYIT 159 (261)
Q Consensus 83 ~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~e-i~~--~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~ 159 (261)
. ...+++.+++|+.++.+.|++=|-|-++. .+. ....+.+.++++.+ ++ .++++. +.. .+
T Consensus 166 -------f-~pd~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k-~g--iV~ipr--~~~----~~ 228 (346)
T COG1817 166 -------F-VPDPEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKK-YG--IVLIPR--EKE----QA 228 (346)
T ss_pred -------C-CCCHHHHHHcCCCCCCceEEEeeccccceeeccccchhhHHHHHHHHHh-Cc--EEEecC--chh----HH
Confidence 0 12367789999999888999877775542 111 12234555566654 23 333332 111 23
Q ss_pred HHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechHHHHHHHHcCCCEEEEEcC
Q 024872 160 GLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRA 214 (261)
Q Consensus 160 ~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tlEa~~~G~P~Vv~~~~ 214 (261)
+..++.. ..+.+.. ..|.-+++-.||++|+.+||++-||+++|+|+|.+|++
T Consensus 229 eife~~~--n~i~pk~-~vD~l~Llyya~lvig~ggTMarEaAlLGtpaIs~~pG 280 (346)
T COG1817 229 EIFEGYR--NIIIPKK-AVDTLSLLYYATLVIGAGGTMAREAALLGTPAISCYPG 280 (346)
T ss_pred HHHhhhc--cccCCcc-cccHHHHHhhhheeecCCchHHHHHHHhCCceEEecCC
Confidence 3444443 2223222 22445589999999999999999999999999999865
No 97
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=98.40 E-value=8.5e-06 Score=73.33 Aligned_cols=136 Identities=20% Similarity=0.211 Sum_probs=84.8
Q ss_pred CCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeE--EEEEeCCCcchHHHHHHHHhcCC--CCEEEecCCCcch
Q 024872 104 PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELI--TVIHVAPNRHVENYITGLIQKWP--VPSILVPGGSSNL 179 (261)
Q Consensus 104 ~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~--~vi~~~~~~~~~~~l~~~~~~~~--~~v~v~~g~~~~~ 179 (261)
++...+++..||++-.. .+....++|...+ ++++ .++++||+.-..+ .+++..... -++.++.. .++
T Consensus 217 pE~~~Ilvs~GGG~dG~--eLi~~~l~A~~~l----~~l~~~~~ivtGP~MP~~~-r~~l~~~A~~~p~i~I~~f--~~~ 287 (400)
T COG4671 217 PEGFDILVSVGGGADGA--ELIETALAAAQLL----AGLNHKWLIVTGPFMPEAQ-RQKLLASAPKRPHISIFEF--RND 287 (400)
T ss_pred CccceEEEecCCChhhH--HHHHHHHHHhhhC----CCCCcceEEEeCCCCCHHH-HHHHHHhcccCCCeEEEEh--hhh
Confidence 33444555555554321 2233455554443 3444 7788888753222 233222222 25677653 679
Q ss_pred HHHHHHHcceeEEechHHHH-HHHHcCCCEEEEEcCChHHHHHH--HhcccCCccchhhhhcCCCCcccccCCCCCHHHH
Q 024872 180 KYDAFSASRVALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFI--RYKAKIPYISLPNILLDSPIIPEALLQACTPDTL 256 (261)
Q Consensus 180 ~~~~~~~aDl~i~~SGt~tl-Ea~~~G~P~Vv~~~~~~~~~~ia--~~~~~~~~~~l~Nil~~~~i~pE~lq~~~~~~~i 256 (261)
+.++|+.||++|+.+|-.|. |...+|+|++++....+-.+++. +|+- -.+|.-.|.-+ ++||+++
T Consensus 288 ~~~ll~gA~~vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~---~LGL~dvL~pe---------~lt~~~L 355 (400)
T COG4671 288 FESLLAGARLVVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLE---ELGLVDVLLPE---------NLTPQNL 355 (400)
T ss_pred HHHHHHhhheeeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHH---hcCcceeeCcc---------cCChHHH
Confidence 99999999999999998777 99999999999988877777774 4565 44666555443 3445555
Q ss_pred HHHh
Q 024872 257 THLL 260 (261)
Q Consensus 257 ~~~~ 260 (261)
++++
T Consensus 356 a~al 359 (400)
T COG4671 356 ADAL 359 (400)
T ss_pred HHHH
Confidence 5554
No 98
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=98.39 E-value=2.5e-06 Score=80.87 Aligned_cols=113 Identities=19% Similarity=0.196 Sum_probs=73.0
Q ss_pred HHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCC----eEEEEEeCCC----cchHHHHHHHHhcC---
Q 024872 97 FKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPE----LITVIHVAPN----RHVENYITGLIQKW--- 165 (261)
Q Consensus 97 ~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~----~~~vi~~~~~----~~~~~~l~~~~~~~--- 165 (261)
+|+++ .++++|+.. +|....| +.+.+++|++++.+++|+ +.++.++++. ..+ +.+++.+++.
T Consensus 252 lr~~~---~~~~vIl~V--gRLd~~K-Gi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~-~~l~~~i~~lv~~ 324 (456)
T TIGR02400 252 LRESL---KGRKLIIGV--DRLDYSK-GLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEY-QQLRRQVEELVGR 324 (456)
T ss_pred HHHHc---CCCeEEEEc--ccccccc-CHHHHHHHHHHHHHhCccccCceEEEEEecCCccCchHH-HHHHHHHHHHHHH
Confidence 45554 255666544 6776655 578899999999887786 4577666432 112 2233333221
Q ss_pred -----C----CCEEEecCCC-cchHHHHHHHcceeEEec-----hHHHHHHHHcCCC----EEEEEcCChH
Q 024872 166 -----P----VPSILVPGGS-SNLKYDAFSASRVALCTS-----GTVAVELQLARLP----CVVAYRAHFL 217 (261)
Q Consensus 166 -----~----~~v~v~~g~~-~~~~~~~~~~aDl~i~~S-----Gt~tlEa~~~G~P----~Vv~~~~~~~ 217 (261)
+ .++.++.+.. .+++.++|++||+++.+| |.+.+|+|+||+| +|+ ....+.
T Consensus 325 in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVl-S~~~G~ 394 (456)
T TIGR02400 325 INGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLIL-SEFAGA 394 (456)
T ss_pred HHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEE-eCCCCC
Confidence 1 1244444432 578999999999999999 6788899999999 776 444333
No 99
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=98.36 E-value=1.6e-05 Score=76.57 Aligned_cols=95 Identities=8% Similarity=-0.043 Sum_probs=56.3
Q ss_pred HHhchhhheecCcchHHHHHH-cCCC-eEEEcCCCccchhhhcCCCC-------CCCcccccCCCcHHHHhhcCCCCCCc
Q 024872 38 LAAFVDHILCILPNEEAICRL-NGLA-ATFVGHPVVEDCLELNLGKG-------PEPCELKMEGNSEDFKNKYSVPSGAT 108 (261)
Q Consensus 38 l~~~~d~v~~~~p~e~~~~~~-~g~~-~~~vG~P~~d~~~~~~~~~~-------~~~~~~~~~~~~~~~r~~l~l~~~~~ 108 (261)
++..+|.++++++......+. .|.+ -.++-|.+.... |....+ ...+. ....++.++.+++++++++
T Consensus 223 aa~~Ad~fttVS~it~~E~~~Ll~~~pd~ViPNGid~~~--f~~~~e~~~~~~~~k~ki--~~f~~~~~~~~~~~~~d~t 298 (590)
T cd03793 223 AAHCAHVFTTVSEITAYEAEHLLKRKPDVVLPNGLNVKK--FSALHEFQNLHAQSKEKI--NEFVRGHFYGHYDFDLDKT 298 (590)
T ss_pred HHhhCCEEEECChHHHHHHHHHhCCCCCEEeCCCcchhh--cccchhhhhhhHHhhhhh--hHHHHHHHhhhcCCCCCCe
Confidence 577799999999988655433 2443 237777765332 111000 00000 0011334577789988888
Q ss_pred EEEEEcCCcHHHHHhhHHHHHHHHHHHhh
Q 024872 109 VISLLPGSRLQEVARMLPIFAKTVELLKD 137 (261)
Q Consensus 109 vIlll~GSR~~ei~~~~~~ll~a~~~l~~ 137 (261)
++++.- +|...-++..+.+++|+.+|..
T Consensus 299 li~f~~-GR~e~~nKGiDvlIeAl~rLn~ 326 (590)
T cd03793 299 LYFFTA-GRYEFSNKGADMFLEALARLNY 326 (590)
T ss_pred EEEEEe-eccccccCCHHHHHHHHHHHHH
Confidence 777643 5764337789999999998854
No 100
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.29 E-value=8.9e-06 Score=67.49 Aligned_cols=92 Identities=23% Similarity=0.214 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHh--cCCCCEEEecCC-CcchHHHHHHHcceeEEec-----
Q 024872 123 RMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQ--KWPVPSILVPGG-SSNLKYDAFSASRVALCTS----- 194 (261)
Q Consensus 123 ~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~--~~~~~v~v~~g~-~~~~~~~~~~~aDl~i~~S----- 194 (261)
+..+.+++++..+.++.++++++++++.... ...+.... ....++.++... ..++...+++.||+++++|
T Consensus 117 k~~~~~~~a~~~l~~~~~~~~~~i~G~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~ 194 (229)
T cd01635 117 KGLDDLIEAFALLKERGPDLKLVIAGDGPER--EYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGF 194 (229)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEeCCCCh--HHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEecccccCc
Confidence 4567899999999887789999999886432 22222122 222356666432 1356677777799999999
Q ss_pred hHHHHHHHHcCCCEEEEEcCChH
Q 024872 195 GTVAVELQLARLPCVVAYRAHFL 217 (261)
Q Consensus 195 Gt~tlEa~~~G~P~Vv~~~~~~~ 217 (261)
|+..+|+|++|+|+|. .+.++.
T Consensus 195 ~~~~~Eam~~g~pvi~-s~~~~~ 216 (229)
T cd01635 195 GLVVLEAMACGLPVIA-TDVGGP 216 (229)
T ss_pred ChHHHHHHhCCCCEEE-cCCCCc
Confidence 6777799999999986 444443
No 101
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.25 E-value=4.9e-06 Score=76.90 Aligned_cols=108 Identities=11% Similarity=0.003 Sum_probs=67.7
Q ss_pred CCCCcEEEEEcCCcHHH-HHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHH
Q 024872 104 PSGATVISLLPGSRLQE-VARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYD 182 (261)
Q Consensus 104 ~~~~~vIlll~GSR~~e-i~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~ 182 (261)
++++++|++..||.... .+.....++++++.+ +.++++.+|.... .. .....++.+.+ ++ ++..
T Consensus 236 ~~~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~-----~~~~i~~~g~~~~-~~------~~~~~~v~~~~-~~--p~~~ 300 (401)
T cd03784 236 AAGRPPVYVGFGSMVVRDPEALARLDVEAVATL-----GQRAILSLGWGGL-GA------EDLPDNVRVVD-FV--PHDW 300 (401)
T ss_pred hCCCCcEEEeCCCCcccCHHHHHHHHHHHHHHc-----CCeEEEEccCccc-cc------cCCCCceEEeC-CC--CHHH
Confidence 45678899898997641 222223344444332 5688888875422 11 12223566553 32 5788
Q ss_pred HHHHcceeEEechHHHH-HHHHcCCCEEEEEcCChHHHHHHHhccc
Q 024872 183 AFSASRVALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFIRYKAK 227 (261)
Q Consensus 183 ~~~~aDl~i~~SGt~tl-Ea~~~G~P~Vv~~~~~~~~~~ia~~~~~ 227 (261)
+|..||++|+..|..|+ |++++|+|+|++... .--...++++.+
T Consensus 301 ll~~~d~~I~hgG~~t~~eal~~GvP~v~~P~~-~dQ~~~a~~~~~ 345 (401)
T cd03784 301 LLPRCAAVVHHGGAGTTAAALRAGVPQLVVPFF-GDQPFWAARVAE 345 (401)
T ss_pred HhhhhheeeecCCchhHHHHHHcCCCEEeeCCC-CCcHHHHHHHHH
Confidence 99999999999997777 999999999987332 212234666653
No 102
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=98.24 E-value=7.9e-06 Score=73.63 Aligned_cols=102 Identities=21% Similarity=0.228 Sum_probs=75.7
Q ss_pred cEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcC--CCCEEEecCCC-cchHHHHH
Q 024872 108 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKW--PVPSILVPGGS-SNLKYDAF 184 (261)
Q Consensus 108 ~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~--~~~v~v~~g~~-~~~~~~~~ 184 (261)
.+|.+. ||.- -++..+.+++.++++.+++|+++|+++|++... ..+++..+++ +.++.++ |.+ .++..++|
T Consensus 196 ~~ivv~--sRLv-yrKGiDll~~iIp~vc~~~p~vrfii~GDGPk~--i~lee~lEk~~l~~rV~~l-G~v~h~~Vr~vl 269 (426)
T KOG1111|consen 196 ITIVVA--SRLV-YRKGIDLLLEIIPSVCDKHPEVRFIIIGDGPKR--IDLEEMLEKLFLQDRVVML-GTVPHDRVRDVL 269 (426)
T ss_pred eEEEEE--eeee-eccchHHHHHHHHHHHhcCCCeeEEEecCCccc--chHHHHHHHhhccCceEEe-cccchHHHHHHH
Confidence 445544 8884 466789999999999999999999999987432 2244444433 3356655 433 46799999
Q ss_pred HHcceeEEec-----hHHHHHHHHcCCCEEEEEcCCh
Q 024872 185 SASRVALCTS-----GTVAVELQLARLPCVVAYRAHF 216 (261)
Q Consensus 185 ~~aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~ 216 (261)
..-|+++-+| |++.+|||.||+|+|.+ +.++
T Consensus 270 ~~G~IFlntSlTEafc~~ivEAaScGL~VVsT-rVGG 305 (426)
T KOG1111|consen 270 VRGDIFLNTSLTEAFCMVIVEAASCGLPVVST-RVGG 305 (426)
T ss_pred hcCcEEeccHHHHHHHHHHHHHHhCCCEEEEe-ecCC
Confidence 9999999999 66777999999998864 4443
No 103
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.21 E-value=7.9e-05 Score=64.71 Aligned_cols=181 Identities=14% Similarity=0.156 Sum_probs=105.6
Q ss_pred cccchhhhcCCCCeEEEEeCCccccccCCcchHHHHHhchhhheecCcchHHHHHHcCCCe-EEEcCC--CccchhhhcC
Q 024872 3 FAARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLAA-TFVGHP--VVEDCLELNL 79 (261)
Q Consensus 3 ~~~~~~~~~~~ip~~~~yv~p~~waw~~g~~r~~~l~~~~d~v~~~~p~e~~~~~~~g~~~-~~vG~P--~~d~~~~~~~ 79 (261)
.+++++|+..|.+.++|...|.+ ++ ...|.|++...+..+.....|.++ ..+|.| +.+...
T Consensus 83 ~l~~~lkk~~~~~~vVqI~~Prl----p~--------~~fDlvivp~HD~~~~~s~~~~Nilpi~Gs~h~Vt~~~l---- 146 (329)
T COG3660 83 PLAFYLKKKFGGIKVVQIQDPRL----PY--------NHFDLVIVPYHDWREELSDQGPNILPINGSPHNVTSQRL---- 146 (329)
T ss_pred HHHHHHHHhcCCceEEEeeCCCC----Cc--------ccceEEeccchhhhhhhhccCCceeeccCCCCcccHHHh----
Confidence 46788999986677789999986 54 358888887766555443345554 367766 333322
Q ss_pred CCCCCCcccccCCCcHHHHhhcCCCCCCcE-EEEEcCCcHHH-H-HhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHH
Q 024872 80 GKGPEPCELKMEGNSEDFKNKYSVPSGATV-ISLLPGSRLQE-V-ARMLPIFAKTVELLKDSFPELITVIHVAPNRHVEN 156 (261)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~r~~l~l~~~~~v-Illl~GSR~~e-i-~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~ 156 (261)
...++.+ ++++ |..++. -++.||+-++- . ..-...+..++-+..+. .+..|++..+... -+
T Consensus 147 -----------Aa~~e~~-~~~~-p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~-~g~~~lisfSRRT--p~ 210 (329)
T COG3660 147 -----------AALREAF-KHLL-PLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILEN-QGGSFLISFSRRT--PD 210 (329)
T ss_pred -----------hhhHHHH-HhhC-CCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHh-CCceEEEEeecCC--cH
Confidence 1123444 4444 444444 45566665541 0 11122344444444443 4678888877532 13
Q ss_pred HHHHHHhc-CCC-CEEEecCC--CcchHHHHHHHcceeEEechHHHH--HHHHcCCCEEEEEcCC
Q 024872 157 YITGLIQK-WPV-PSILVPGG--SSNLKYDAFSASRVALCTSGTVAV--ELQLARLPCVVAYRAH 215 (261)
Q Consensus 157 ~l~~~~~~-~~~-~v~v~~g~--~~~~~~~~~~~aDl~i~~SGt~tl--Ea~~~G~P~Vv~~~~~ 215 (261)
.++..++. ++. ...+..+. ..+...++|++||.+|+..-.+++ ||++.|+|+-+.+..+
T Consensus 211 ~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSinM~sEAasTgkPv~~~~~~~ 275 (329)
T COG3660 211 TVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADSINMCSEAASTGKPVFILEPPN 275 (329)
T ss_pred HHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecchhhhhHHHhccCCCeEEEecCC
Confidence 34555543 221 22333321 134578999999999999876555 9999999988765443
No 104
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.18 E-value=2.1e-05 Score=68.92 Aligned_cols=95 Identities=20% Similarity=0.258 Sum_probs=59.1
Q ss_pred CCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHH
Q 024872 106 GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFS 185 (261)
Q Consensus 106 ~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~ 185 (261)
-+.++.-+|||-. +. ..++.++.+.+..-++++|+. ..++++.+ +....+..+ ++.++.. .+||.++|.
T Consensus 158 ~r~ilI~lGGsDp---k~---lt~kvl~~L~~~~~nl~iV~g-s~~p~l~~-l~k~~~~~~-~i~~~~~--~~dma~LMk 226 (318)
T COG3980 158 KRDILITLGGSDP---KN---LTLKVLAELEQKNVNLHIVVG-SSNPTLKN-LRKRAEKYP-NINLYID--TNDMAELMK 226 (318)
T ss_pred hheEEEEccCCCh---hh---hHHHHHHHhhccCeeEEEEec-CCCcchhH-HHHHHhhCC-CeeeEec--chhHHHHHH
Confidence 3346666787754 32 356666777654324554443 22334434 344444433 3443322 568999999
Q ss_pred HcceeEEechHHHHHHHHcCCCEEEE
Q 024872 186 ASRVALCTSGTVAVELQLARLPCVVA 211 (261)
Q Consensus 186 ~aDl~i~~SGt~tlEa~~~G~P~Vv~ 211 (261)
.||++|+.+|.++-|++.+|+|+.++
T Consensus 227 e~d~aI~AaGstlyEa~~lgvP~l~l 252 (318)
T COG3980 227 EADLAISAAGSTLYEALLLGVPSLVL 252 (318)
T ss_pred hcchheeccchHHHHHHHhcCCceEE
Confidence 99999988776666999999997654
No 105
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.15 E-value=1.7e-05 Score=74.80 Aligned_cols=134 Identities=16% Similarity=0.226 Sum_probs=78.3
Q ss_pred HHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCC---CEEEec
Q 024872 97 FKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV---PSILVP 173 (261)
Q Consensus 97 ~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~---~v~v~~ 173 (261)
-|..+|||+|.-+.+.+ .+. .++.|..+++..++.+..|+.++++...+.. .++.+++.+.+.|+ ++.+.+
T Consensus 275 ~R~~~gLp~d~vvF~~f--n~~---~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~-~~~~l~~~~~~~Gv~~~Ri~f~~ 348 (468)
T PF13844_consen 275 TRAQYGLPEDAVVFGSF--NNL---FKISPETLDLWARILKAVPNSRLWLLRFPAS-GEARLRRRFAAHGVDPDRIIFSP 348 (468)
T ss_dssp ETGGGT--SSSEEEEE---S-G---GG--HHHHHHHHHHHHHSTTEEEEEEETSTT-HHHHHHHHHHHTTS-GGGEEEEE
T ss_pred CHHHcCCCCCceEEEec--Ccc---ccCCHHHHHHHHHHHHhCCCcEEEEeeCCHH-HHHHHHHHHHHcCCChhhEEEcC
Confidence 36789999887555443 443 4567889999999999999999988766533 34556666666665 355543
Q ss_pred CCCcchHHHHHHHcceeEEec----hHHHHHHHHcCCCEEEEEcCChHHHHH-HHhcccCCccchhhhhcCC
Q 024872 174 GGSSNLKYDAFSASRVALCTS----GTVAVELQLARLPCVVAYRAHFLTEWF-IRYKAKIPYISLPNILLDS 240 (261)
Q Consensus 174 g~~~~~~~~~~~~aDl~i~~S----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i-a~~~~~~~~~~l~Nil~~~ 240 (261)
.....+....++.+|+++=+. ||+|+||+.+|+|+|. ..+..+.-.. +..|. .+|++.+++..
T Consensus 349 ~~~~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVT-l~G~~~~sR~~aSiL~---~lGl~ElIA~s 416 (468)
T PF13844_consen 349 VAPREEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVT-LPGETMASRVGASILR---ALGLPELIADS 416 (468)
T ss_dssp ---HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB----SSGGGSHHHHHHH---HHT-GGGB-SS
T ss_pred CCCHHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEe-ccCCCchhHHHHHHHH---HcCCchhcCCC
Confidence 211334556778899999654 5677799999999884 4554433333 33333 66778877754
No 106
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=98.13 E-value=1.7e-05 Score=61.68 Aligned_cols=79 Identities=19% Similarity=0.195 Sum_probs=53.9
Q ss_pred hHHHHHH-HHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEec------hH
Q 024872 124 MLPIFAK-TVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTS------GT 196 (261)
Q Consensus 124 ~~~~ll~-a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~S------Gt 196 (261)
.+..+++ +++++.++.|+++|.+.|+... + +++. .. .++.+. |++ +++.++++.||+++.++ ++
T Consensus 16 ~~~~li~~~~~~l~~~~p~~~l~i~G~~~~---~-l~~~-~~--~~v~~~-g~~-~e~~~~l~~~dv~l~p~~~~~~~~~ 86 (135)
T PF13692_consen 16 GLEELIEAALERLKEKHPDIELIIIGNGPD---E-LKRL-RR--PNVRFH-GFV-EELPEILAAADVGLIPSRFNEGFPN 86 (135)
T ss_dssp THHHHHH-HHHHHHHHSTTEEEEEECESS----H-HCCH-HH--CTEEEE--S--HHHHHHHHC-SEEEE-BSS-SCC-H
T ss_pred cccchhhhHHHHHHHHCcCEEEEEEeCCHH---H-HHHh-cC--CCEEEc-CCH-HHHHHHHHhCCEEEEEeeCCCcCcH
Confidence 4567888 9999998899999999887432 1 3333 11 257776 443 68999999999999976 24
Q ss_pred HHHHHHHcCCCEEEE
Q 024872 197 VAVELQLARLPCVVA 211 (261)
Q Consensus 197 ~tlEa~~~G~P~Vv~ 211 (261)
..+|++++|+|+|..
T Consensus 87 k~~e~~~~G~pvi~~ 101 (135)
T PF13692_consen 87 KLLEAMAAGKPVIAS 101 (135)
T ss_dssp HHHHHHCTT--EEEE
T ss_pred HHHHHHHhCCCEEEC
Confidence 555999999998863
No 107
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.11 E-value=2.1e-05 Score=74.78 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=93.1
Q ss_pred CCcHHHHhhcCCCC--CCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCE
Q 024872 92 GNSEDFKNKYSVPS--GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPS 169 (261)
Q Consensus 92 ~~~~~~r~~l~l~~--~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v 169 (261)
.++..+++++|++. +.|++.+. ||..+ .+.++.+++++..+.+. ..|+++.|.+...+++.+..+.+.+..++
T Consensus 277 ~nk~~L~~~~gL~~~~~~pl~~~v--sRl~~-QKG~dl~~~~i~~~l~~--~~~~vilG~gd~~le~~~~~la~~~~~~~ 351 (487)
T COG0297 277 ENKVALQERLGLDVDLPGPLFGFV--SRLTA-QKGLDLLLEAIDELLEQ--GWQLVLLGTGDPELEEALRALASRHPGRV 351 (487)
T ss_pred HHHHHHHHHhCCCCCCCCcEEEEe--ecccc-ccchhHHHHHHHHHHHh--CceEEEEecCcHHHHHHHHHHHHhcCceE
Confidence 35667788999995 44666654 88877 55689999999999875 48999988775556666666666555455
Q ss_pred EEecCCCcchHHHHHHHcceeEEec-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 170 ILVPGGSSNLKYDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 170 ~v~~g~~~~~~~~~~~~aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
.+.-++...-...+++.||+++.+| |.+.+++|..|++-|+ .+++++..-+
T Consensus 352 ~~~i~~~~~la~~i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv-~~tGGLadTV 407 (487)
T COG0297 352 LVVIGYDEPLAHLIYAGADVILMPSRFEPCGLTQLYAMRYGTLPIV-RETGGLADTV 407 (487)
T ss_pred EEEeeecHHHHHHHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceE-cccCCcccee
Confidence 5544553334688999999999999 9999999999997664 7888776554
No 108
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.10 E-value=2.2e-05 Score=69.25 Aligned_cols=109 Identities=14% Similarity=0.107 Sum_probs=73.7
Q ss_pred CcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcC-CCCEEEecCC-CcchHHHHH
Q 024872 107 ATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKW-PVPSILVPGG-SSNLKYDAF 184 (261)
Q Consensus 107 ~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~-~~~v~v~~g~-~~~~~~~~~ 184 (261)
++.|++.|||+..+-.-..+.+.+.++.|.++ ++++++.+++++ .+..++..+.. ..++..+.+. .-.+...++
T Consensus 121 ~~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~--~~~ivl~g~~~e--~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li 196 (279)
T cd03789 121 KPVVVLPPGASGPAKRWPAERFAALADRLLAR--GARVVLTGGPAE--RELAEEIAAALGGPRVVNLAGKTSLRELAALL 196 (279)
T ss_pred CCEEEECCCCCCccccCCHHHHHHHHHHHHHC--CCEEEEEechhh--HHHHHHHHHhcCCCccccCcCCCCHHHHHHHH
Confidence 67899999998754332345788888888764 789988887642 23344433332 1122222232 135789999
Q ss_pred HHcceeEEe-chHHHHHHHHcCCCEEEEEcCChHHHH
Q 024872 185 SASRVALCT-SGTVAVELQLARLPCVVAYRAHFLTEW 220 (261)
Q Consensus 185 ~~aDl~i~~-SGt~tlEa~~~G~P~Vv~~~~~~~~~~ 220 (261)
+.||++|+. ||++-+ |+++|+|+|.+|..+....|
T Consensus 197 ~~~~l~I~~Dsg~~Hl-A~a~~~p~i~l~g~~~~~~~ 232 (279)
T cd03789 197 ARADLVVTNDSGPMHL-AAALGTPTVALFGPTDPART 232 (279)
T ss_pred HhCCEEEeeCCHHHHH-HHHcCCCEEEEECCCCcccc
Confidence 999999998 788888 57999999999876544443
No 109
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.07 E-value=7.9e-05 Score=68.77 Aligned_cols=196 Identities=13% Similarity=0.089 Sum_probs=115.5
Q ss_pred hhhcCCCCeEEEE---eCCc--cccccCCcchHHHHHhchhhheecCcchHHHHHHcCCC-eEEEcCCCccchhhhcCCC
Q 024872 8 SHERLNGPAHFHY---VAPS--FWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLA-ATFVGHPVVEDCLELNLGK 81 (261)
Q Consensus 8 ~~~~~~ip~~~~y---v~p~--~waw~~g~~r~~~l~~~~d~v~~~~p~e~~~~~~~g~~-~~~vG~P~~d~~~~~~~~~ 81 (261)
++++ |||+++-= ..-| -|.+.. .-++.+.+..|.+++=++.+.+.|...|.+ +.++||==.|.-.. +.
T Consensus 142 ~~~~-~~p~~LvNaRLS~rS~~~y~k~~--~~~~~~~~~i~li~aQse~D~~Rf~~LGa~~v~v~GNlKfd~~~~--~~- 215 (419)
T COG1519 142 LKRR-GIPLVLVNARLSDRSFARYAKLK--FLARLLFKNIDLILAQSEEDAQRFRSLGAKPVVVTGNLKFDIEPP--PQ- 215 (419)
T ss_pred HHHc-CCCEEEEeeeechhhhHHHHHHH--HHHHHHHHhcceeeecCHHHHHHHHhcCCcceEEecceeecCCCC--hh-
Confidence 4455 89996411 1112 255542 133456777999999999999999999985 67899853321100 00
Q ss_pred CCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHH
Q 024872 82 GPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGL 161 (261)
Q Consensus 82 ~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~ 161 (261)
.....+..|.+++.+ +++++.. ++...|- +..+++...|.+++||+.++++- ..++.-+.+++.
T Consensus 216 --------~~~~~~~~r~~l~~~--r~v~iaa-STH~GEe----ei~l~~~~~l~~~~~~~llIlVP-RHpERf~~v~~l 279 (419)
T COG1519 216 --------LAAELAALRRQLGGH--RPVWVAA-STHEGEE----EIILDAHQALKKQFPNLLLILVP-RHPERFKAVENL 279 (419)
T ss_pred --------hHHHHHHHHHhcCCC--CceEEEe-cCCCchH----HHHHHHHHHHHhhCCCceEEEec-CChhhHHHHHHH
Confidence 001234566666654 5665543 3433332 35888999999999998766652 223322345555
Q ss_pred HhcCCCC-------------EEEecCCCcchHHHHHHHcceeEEec-----hH-HHHHHHHcCCCEEEEEcCChHHHHHH
Q 024872 162 IQKWPVP-------------SILVPGGSSNLKYDAFSASRVALCTS-----GT-VAVELQLARLPCVVAYRAHFLTEWFI 222 (261)
Q Consensus 162 ~~~~~~~-------------v~v~~g~~~~~~~~~~~~aDl~i~~S-----Gt-~tlEa~~~G~P~Vv~~~~~~~~~~ia 222 (261)
+++.+.. ..++-+....+|..+|+.||+++.-- |+ .-||.+++|+|+|...-+.-++. ++
T Consensus 280 ~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~Gp~~~Nf~e-i~ 358 (419)
T COG1519 280 LKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIFGPYTFNFSD-IA 358 (419)
T ss_pred HHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCChhhHHHcCCCEEeCCccccHHH-HH
Confidence 5544321 11211222568999999999987622 44 55699999999886544444443 33
Q ss_pred Hhcc
Q 024872 223 RYKA 226 (261)
Q Consensus 223 ~~~~ 226 (261)
+++.
T Consensus 359 ~~l~ 362 (419)
T COG1519 359 ERLL 362 (419)
T ss_pred HHHH
Confidence 4443
No 110
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=97.95 E-value=3.5e-05 Score=70.71 Aligned_cols=161 Identities=16% Similarity=0.195 Sum_probs=86.6
Q ss_pred HHHHhchhhheecCcchHHHHHH-cCCC---eEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEE
Q 024872 36 KNLAAFVDHILCILPNEEAICRL-NGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVIS 111 (261)
Q Consensus 36 ~~l~~~~d~v~~~~p~e~~~~~~-~g~~---~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIl 111 (261)
.+..+..|.+++.++++.+.+++ .|.+ +..+|.|-.|.+.+.. ...++.+++.++++.++++||
T Consensus 129 ~~~~~~~d~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l~~~~------------~~~~~~i~~~~~~~~~~k~IL 196 (369)
T PF04464_consen 129 KRNYRNYDYFIVSSEFEKEIFKKAFGYPEDKILVTGYPRNDYLFNKS------------KENRNRIKKKLGIDKDKKVIL 196 (369)
T ss_dssp HHHHTT-SEEEESSHHHHHHHHHHTT--GGGEEES--GGGHHHHHST------------T-HHHHHHHHTT--SS-EEEE
T ss_pred hhhccCCcEEEECCHHHHHHHHHHhccCcceEEEeCCCeEhHHhccC------------HHHHHHHHHHhccCCCCcEEE
Confidence 34566799999999999888864 4553 7789999888765321 112457788999999999999
Q ss_pred EEcCCcHHHHH-----hhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHH
Q 024872 112 LLPGSRLQEVA-----RMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSA 186 (261)
Q Consensus 112 ll~GSR~~ei~-----~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~ 186 (261)
.+|==|..... .....-.+.+.. ...+++.+++-.++. ........ .....++..++. ..++.++|..
T Consensus 197 yaPT~R~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~li~k~Hp~--~~~~~~~~-~~~~~~i~~~~~--~~~~~~ll~~ 269 (369)
T PF04464_consen 197 YAPTWRDNSSNEYFKFFFSDLDFEKLNF--LLKNNYVLIIKPHPN--MKKKFKDF-KEDNSNIIFVSD--NEDIYDLLAA 269 (369)
T ss_dssp EE----GGG--GGSS----TT-HHHHHH--HHTTTEEEEE--SHH--HHTT-----TT-TTTEEE-TT---S-HHHHHHT
T ss_pred EeeccccccccccccccccccCHHHHHH--HhCCCcEEEEEeCch--hhhchhhh-hccCCcEEECCC--CCCHHHHHHh
Confidence 99854443222 001111222222 234688888776653 21211211 112225655544 3479999999
Q ss_pred cceeEEechHHHHHHHHcCCCEEEEEcCCh
Q 024872 187 SRVALCTSGTVAVELQLARLPCVVAYRAHF 216 (261)
Q Consensus 187 aDl~i~~SGt~tlEa~~~G~P~Vv~~~~~~ 216 (261)
||++||--..+..|.+.+++|+|. |.-+.
T Consensus 270 aDiLITDySSi~fD~~~l~KPiif-y~~D~ 298 (369)
T PF04464_consen 270 ADILITDYSSIIFDFLLLNKPIIF-YQPDL 298 (369)
T ss_dssp -SEEEESS-THHHHHGGGT--EEE-E-TTT
T ss_pred cCEEEEechhHHHHHHHhCCCEEE-EeccH
Confidence 999999998888899999999885 54433
No 111
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=97.85 E-value=0.00014 Score=69.43 Aligned_cols=120 Identities=17% Similarity=0.104 Sum_probs=80.3
Q ss_pred HHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCC----eEEEEEeCCCc----c---hHHHHHHHHh
Q 024872 95 EDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPE----LITVIHVAPNR----H---VENYITGLIQ 163 (261)
Q Consensus 95 ~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~----~~~vi~~~~~~----~---~~~~l~~~~~ 163 (261)
.++|++++ ++++|+-. +|....|+ ++..++|++++.+++|+ ++++.++.++. . +++.+++.+.
T Consensus 276 ~~lr~~~~---~~kiIl~V--DRLDy~KG-I~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~ 349 (487)
T TIGR02398 276 ERIRSELA---GVKLILSA--ERVDYTKG-ILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVG 349 (487)
T ss_pred HHHHHHcC---CceEEEEe--cccccccC-HHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHH
Confidence 34666666 55666544 88876654 78899999999988896 57887777641 1 2233333332
Q ss_pred cC----C----CCEEEecCCC-cchHHHHHHHcceeEEec-----hHHHHHHHHcCC----CEEEEEcCChHHHHH
Q 024872 164 KW----P----VPSILVPGGS-SNLKYDAFSASRVALCTS-----GTVAVELQLARL----PCVVAYRAHFLTEWF 221 (261)
Q Consensus 164 ~~----~----~~v~v~~g~~-~~~~~~~~~~aDl~i~~S-----Gt~tlEa~~~G~----P~Vv~~~~~~~~~~i 221 (261)
+. + .++.++.+.+ .+++..+|++||+++..| +.++.|.++|+. |.|+ .+..+....+
T Consensus 350 ~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLIL-SefaGaa~~l 424 (487)
T TIGR02398 350 RINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVL-SEFAGAAVEL 424 (487)
T ss_pred HHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEE-eccccchhhc
Confidence 21 1 1455555543 578999999999999999 567889999988 6554 6665544333
No 112
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=97.83 E-value=9.4e-05 Score=74.68 Aligned_cols=107 Identities=21% Similarity=0.186 Sum_probs=67.7
Q ss_pred CCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeE----EEEEeCCCc----chHHHHHHHHhcC--------C---
Q 024872 106 GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELI----TVIHVAPNR----HVENYITGLIQKW--------P--- 166 (261)
Q Consensus 106 ~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~----~vi~~~~~~----~~~~~l~~~~~~~--------~--- 166 (261)
++++|+.. +|....| +++.+++|++++.+++|+++ ++.++++.. .+ +.+++.+++. +
T Consensus 278 ~~~lIl~V--gRLd~~K-Gi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y-~~l~~~v~~l~g~In~~~g~~~ 353 (797)
T PLN03063 278 GRKVILGV--DRLDMIK-GIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEY-QKLKSQVHELVGRINGRFGSVS 353 (797)
T ss_pred CCeEEEEe--ccccccc-CHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCchHHH-HHHHHHHHHHHHHhhcccccCC
Confidence 55666544 6776544 57889999999988888763 444444321 12 2233333221 1
Q ss_pred -CCEEEecCCC-cchHHHHHHHcceeEEec-----hHHHHHHHHcCCC---EEEEEcCCh
Q 024872 167 -VPSILVPGGS-SNLKYDAFSASRVALCTS-----GTVAVELQLARLP---CVVAYRAHF 216 (261)
Q Consensus 167 -~~v~v~~g~~-~~~~~~~~~~aDl~i~~S-----Gt~tlEa~~~G~P---~Vv~~~~~~ 216 (261)
.+++++.+.+ .+++.++|++||+++.+| |.+.+|+|+||+| ++|+....+
T Consensus 354 ~~pv~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G 413 (797)
T PLN03063 354 SVPIHHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAG 413 (797)
T ss_pred CceeEEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcC
Confidence 1233343322 468999999999999999 6788899999999 333454443
No 113
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=97.75 E-value=0.0025 Score=56.79 Aligned_cols=187 Identities=10% Similarity=0.016 Sum_probs=101.5
Q ss_pred hhhhcCCCCeEEEE--eCCccccccCCcchHHHHHhchhhheecCcchHHHHHHcCCCeEEEcCCCccchhhhcCCCCCC
Q 024872 7 YSHERLNGPAHFHY--VAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGPE 84 (261)
Q Consensus 7 ~~~~~~~ip~~~~y--v~p~~waw~~g~~r~~~l~~~~d~v~~~~p~e~~~~~~~g~~~~~vG~P~~d~~~~~~~~~~~~ 84 (261)
.|+.. |+|++++= +.|- ..+.+++.++++.+.+|.+.+--+...+++++.|+++.++..|...- . .
T Consensus 94 ~a~~~-~k~~~~~g~giGP~--~~~~~r~~~~~~l~~~~~i~vRD~~S~~~l~~~g~~i~~~~D~a~~l-~---~----- 161 (298)
T TIGR03609 94 LARLF-GKPVILWGQGIGPL--RRRLSRWLVRRVLRGCRAISVRDAASYRLLKRLGIPAELAADPVWLL-P---P----- 161 (298)
T ss_pred HHHHc-CCCEEEEecccCCc--CCHHHHHHHHHHHccCCEEEEeCHHHHHHHHHhCCCceEeCChhhhC-C---C-----
Confidence 34444 99986432 1221 11111223455667799998888888899988898888888775421 1 0
Q ss_pred CcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeC-CCcchHHHHHHHHh
Q 024872 85 PCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVA-PNRHVENYITGLIQ 163 (261)
Q Consensus 85 ~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~-~~~~~~~~l~~~~~ 163 (261)
.... . ....+++.|++...+...--......+.+++..+.++ .+.+++++.. ...+. +..+....
T Consensus 162 -------~~~~---~--~~~~~~~~i~i~~r~~~~~~~~~~~~l~~~l~~l~~~-~g~~v~~i~~~~~~D~-~~~~~l~~ 227 (298)
T TIGR03609 162 -------EPWP---G--GEPLPEPVIVVSLRPWPLLDVSRLLRLLRALDRLQRD-TGAFVLFLPFQQPQDL-PLARALRD 227 (298)
T ss_pred -------Cccc---c--cccCCCCeEEEEECCCCcCCHHHHHHHHHHHHHHHHh-hCCeEEEEeCCcchhH-HHHHHHHH
Confidence 0000 0 1112345666654332110011133566777777654 3566654432 22222 22233222
Q ss_pred cCCCCEEEecCCCcchHHHHHHHcceeEEechHHHHHHHHcCCCEEEEEcCChHHH
Q 024872 164 KWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAHFLTE 219 (261)
Q Consensus 164 ~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tlEa~~~G~P~Vv~~~~~~~~~ 219 (261)
....+..++.....+++.++++.||++|+..==+++=|+..|+|+|.+.-.+....
T Consensus 228 ~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~RlH~~I~A~~~gvP~i~i~y~~K~~~ 283 (298)
T TIGR03609 228 QLLGPAEVLSPLDPEELLGLFASARLVIGMRLHALILAAAAGVPFVALSYDPKVRA 283 (298)
T ss_pred hcCCCcEEEecCCHHHHHHHHhhCCEEEEechHHHHHHHHcCCCEEEeeccHHHHH
Confidence 22212223322213577889999999999986677779999999997743344443
No 114
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.54 E-value=0.0012 Score=59.61 Aligned_cols=114 Identities=16% Similarity=0.191 Sum_probs=73.0
Q ss_pred HHhhcCCCCCCcEEEEEcCCcHHHHHh-hHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCC
Q 024872 97 FKNKYSVPSGATVISLLPGSRLQEVAR-MLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGG 175 (261)
Q Consensus 97 ~r~~l~l~~~~~vIlll~GSR~~ei~~-~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~ 175 (261)
+..+++++.+++.|++.|||+....|+ -.+.+.+.++.+.+ .+.++++.|++++ ++..++.....+..+.-+.|.
T Consensus 164 ~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~--~~~~ivl~G~~~e--~~~~~~i~~~~~~~~~~l~g~ 239 (334)
T TIGR02195 164 ALAKFGLDTERPIIAFCPGAEFGPAKRWPHEHYAELAKRLID--QGYQVVLFGSAKD--HPAGNEIEALLPGELRNLAGE 239 (334)
T ss_pred HHHHcCCCCCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHH--CCCEEEEEEChhh--HHHHHHHHHhCCcccccCCCC
Confidence 446678877789999999986322222 12367777777764 3678888887643 233333333222122112232
Q ss_pred -CcchHHHHHHHcceeEEec-hHHHHHHHHcCCCEEEEEcCC
Q 024872 176 -SSNLKYDAFSASRVALCTS-GTVAVELQLARLPCVVAYRAH 215 (261)
Q Consensus 176 -~~~~~~~~~~~aDl~i~~S-Gt~tlEa~~~G~P~Vv~~~~~ 215 (261)
.-.+...+++.||++|+.- |.+=+ |+++|+|+|.+|...
T Consensus 240 ~sL~el~ali~~a~l~I~~DSGp~Hl-AaA~~~P~i~lfG~t 280 (334)
T TIGR02195 240 TSLDEAVDLIALAKAVVTNDSGLMHV-AAALNRPLVALYGST 280 (334)
T ss_pred CCHHHHHHHHHhCCEEEeeCCHHHHH-HHHcCCCEEEEECCC
Confidence 2357899999999999965 55555 999999999888543
No 115
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=97.53 E-value=0.00032 Score=70.29 Aligned_cols=100 Identities=22% Similarity=0.218 Sum_probs=65.0
Q ss_pred CCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCC----eEEEEEeCCC----cch---HHHHHHHHhc----CC---
Q 024872 105 SGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPE----LITVIHVAPN----RHV---ENYITGLIQK----WP--- 166 (261)
Q Consensus 105 ~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~----~~~vi~~~~~----~~~---~~~l~~~~~~----~~--- 166 (261)
.++++|+.. +|....| +.+.+++|++++.+.+|+ ++++++++++ +.+ ++.+++.+.+ ++
T Consensus 263 ~~~~~il~V--gRl~~~K-gi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~ 339 (726)
T PRK14501 263 RGRKIILSI--DRLDYTK-GIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVD 339 (726)
T ss_pred CCCEEEEEe--cCccccc-CHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 355555544 6776555 578899999999887886 5777776432 111 2222222211 11
Q ss_pred -CCEEEecCCC-cchHHHHHHHcceeEEec-----hHHHHHHHHcCCC
Q 024872 167 -VPSILVPGGS-SNLKYDAFSASRVALCTS-----GTVAVELQLARLP 207 (261)
Q Consensus 167 -~~v~v~~g~~-~~~~~~~~~~aDl~i~~S-----Gt~tlEa~~~G~P 207 (261)
.++.++.+++ .+++.++|++||+++.+| |.+.+|+|+||+|
T Consensus 340 ~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~ 387 (726)
T PRK14501 340 WTPIHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTD 387 (726)
T ss_pred cceEEEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCC
Confidence 1244444432 578999999999999999 6678899999775
No 116
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.49 E-value=0.0011 Score=60.33 Aligned_cols=105 Identities=19% Similarity=0.168 Sum_probs=69.5
Q ss_pred CcEEEEEcC-CcHHHHHh-hHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHH
Q 024872 107 ATVISLLPG-SRLQEVAR-MLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAF 184 (261)
Q Consensus 107 ~~vIlll~G-SR~~ei~~-~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~ 184 (261)
++.|++.|| |++.. ++ -.+.+.+.++.+.++. .++++.+++ .+ .+..+++.+.....+.+.+...-.++..++
T Consensus 175 ~~~i~i~pg~s~~~~-K~wp~e~~~~l~~~l~~~~--~~Vvl~g~~-~e-~e~~~~i~~~~~~~~~l~~k~sL~e~~~li 249 (334)
T COG0859 175 RPYIVINPGASRGSA-KRWPLEHYAELAELLIAKG--YQVVLFGGP-DE-EERAEEIAKGLPNAVILAGKTSLEELAALI 249 (334)
T ss_pred CCeEEEecccccccc-CCCCHHHHHHHHHHHHHCC--CEEEEecCh-HH-HHHHHHHHHhcCCccccCCCCCHHHHHHHH
Confidence 689999999 87642 22 2336777777887653 788877776 33 344455555443222233222246789999
Q ss_pred HHcceeEEechHHHHHHHHcCCCEEEEEcCCh
Q 024872 185 SASRVALCTSGTVAVELQLARLPCVVAYRAHF 216 (261)
Q Consensus 185 ~~aDl~i~~SGt~tlEa~~~G~P~Vv~~~~~~ 216 (261)
+.||++|+...+-+==|+++|+|+|.+|..+.
T Consensus 250 ~~a~l~I~~DSg~~HlAaA~~~P~I~iyg~t~ 281 (334)
T COG0859 250 AGADLVIGNDSGPMHLAAALGTPTIALYGPTS 281 (334)
T ss_pred hcCCEEEccCChHHHHHHHcCCCEEEEECCCC
Confidence 99999999765444459999999999986543
No 117
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=97.44 E-value=0.0013 Score=56.69 Aligned_cols=109 Identities=15% Similarity=0.162 Sum_probs=60.1
Q ss_pred CCCCcEEEEEcCCcHHHHHhhHH--HHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCC-CEEEecCCCcchH
Q 024872 104 PSGATVISLLPGSRLQEVARMLP--IFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV-PSILVPGGSSNLK 180 (261)
Q Consensus 104 ~~~~~vIlll~GSR~~ei~~~~~--~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~-~v~v~~g~~~~~~ 180 (261)
..+++.|++.||++.. .+..| .+.+.++.|.+. ..++++.+++.+..++..+...+.... .+.+.......+.
T Consensus 102 ~~~~~~i~i~~~a~~~--~k~wp~e~~~~l~~~l~~~--~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~ 177 (247)
T PF01075_consen 102 SKDKPYIGINPGASWP--SKRWPAEKWAELIERLKER--GYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLREL 177 (247)
T ss_dssp -TTSSEEEEE---SSG--GGS--HHHHHHHHHHHCCC--T-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHH
T ss_pred hccCCeEEEeecCCCc--cccCCHHHHHHHHHHHHhh--CceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHH
Confidence 4577889999998773 23334 467777777653 377877777643122333333333221 2333322224578
Q ss_pred HHHHHHcceeEEec-hHHHHHHHHcCCCEEEEEcCChH
Q 024872 181 YDAFSASRVALCTS-GTVAVELQLARLPCVVAYRAHFL 217 (261)
Q Consensus 181 ~~~~~~aDl~i~~S-Gt~tlEa~~~G~P~Vv~~~~~~~ 217 (261)
..+++.||++|+.- |.+=+ |+++|+|+|.++.....
T Consensus 178 ~ali~~a~~~I~~Dtg~~Hl-A~a~~~p~v~lfg~t~~ 214 (247)
T PF01075_consen 178 AALISRADLVIGNDTGPMHL-AAALGTPTVALFGPTNP 214 (247)
T ss_dssp HHHHHTSSEEEEESSHHHHH-HHHTT--EEEEESSS-H
T ss_pred HHHHhcCCEEEecCChHHHH-HHHHhCCEEEEecCCCH
Confidence 89999999999876 44444 99999999988855433
No 118
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=97.34 E-value=0.0015 Score=61.16 Aligned_cols=93 Identities=13% Similarity=0.205 Sum_probs=61.7
Q ss_pred CCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHH
Q 024872 103 VPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYD 182 (261)
Q Consensus 103 l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~ 182 (261)
++.|+++|.+.-||-+.. ...+..+++++.. -+.++|+.+++ .+. . ..+...++.+.. + -...+
T Consensus 233 ~~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~-----l~~~vi~~~~~-~~~-~-----~~~~p~n~~v~~-~--~p~~~ 296 (406)
T COG1819 233 IPADRPIVYVSLGTVGNA-VELLAIVLEALAD-----LDVRVIVSLGG-ARD-T-----LVNVPDNVIVAD-Y--VPQLE 296 (406)
T ss_pred hcCCCCeEEEEcCCcccH-HHHHHHHHHHHhc-----CCcEEEEeccc-ccc-c-----cccCCCceEEec-C--CCHHH
Confidence 567888888877776632 2222334444333 35788888765 221 1 122333555553 2 25678
Q ss_pred HHHHcceeEEechHHHH-HHHHcCCCEEEE
Q 024872 183 AFSASRVALCTSGTVAV-ELQLARLPCVVA 211 (261)
Q Consensus 183 ~~~~aDl~i~~SGt~tl-Ea~~~G~P~Vv~ 211 (261)
++..||++|+-.|..|+ ||+.+|+|+|++
T Consensus 297 ~l~~ad~vI~hGG~gtt~eaL~~gvP~vv~ 326 (406)
T COG1819 297 LLPRADAVIHHGGAGTTSEALYAGVPLVVI 326 (406)
T ss_pred HhhhcCEEEecCCcchHHHHHHcCCCEEEe
Confidence 99999999999998777 999999999975
No 119
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=97.32 E-value=0.0034 Score=56.65 Aligned_cols=176 Identities=14% Similarity=0.153 Sum_probs=97.0
Q ss_pred cccchhhhcCCC--CeEEEEeCCccccccCCcchHHHHHhchhhheecCcchHHHHHHcCCCe-EEEcCC--Cccchhhh
Q 024872 3 FAARYSHERLNG--PAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLAA-TFVGHP--VVEDCLEL 77 (261)
Q Consensus 3 ~~~~~~~~~~~i--p~~~~yv~p~~waw~~g~~r~~~l~~~~d~v~~~~p~e~~~~~~~g~~~-~~vG~P--~~d~~~~~ 77 (261)
.+++.+++..|. ++ +|-..|+++ . +..|.+++.-.+. +. .|-++ ...|.| +.++-..
T Consensus 70 ~~~~~l~r~~gg~~~~-V~i~~P~~~--~----------~~FDlvi~p~HD~---~~-~~~Nvl~t~ga~~~i~~~~l~- 131 (311)
T PF06258_consen 70 PAALALRRASGGRTKT-VQIMDPRLP--P----------RPFDLVIVPEHDR---LP-RGPNVLPTLGAPNRITPERLA- 131 (311)
T ss_pred HHHHHHHHHcCCCceE-EEEcCCCCC--c----------cccCEEEECcccC---cC-CCCceEecccCCCcCCHHHHH-
Confidence 345667776655 55 577778753 1 2688887764442 10 12233 234444 3322110
Q ss_pred cCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHH-HHH-hhHHHHHHHHHHHhhhCCCeEEEEEeCCCc--c
Q 024872 78 NLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQ-EVA-RMLPIFAKTVELLKDSFPELITVIHVAPNR--H 153 (261)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~-ei~-~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~--~ 153 (261)
..+.++..+++-.+...+.+++||.-+. ... .....+.+.+..+.+..+ .++.+.++... +
T Consensus 132 --------------~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~vttSRRTp~~ 196 (311)
T PF06258_consen 132 --------------EAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYG-GSLLVTTSRRTPPE 196 (311)
T ss_pred --------------HHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCC-CeEEEEcCCCCcHH
Confidence 1123444555543444455566665443 111 112246666666766554 78888877532 1
Q ss_pred hHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechHHHH--HHHHcCCCEEEEE
Q 024872 154 VENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAV--ELQLARLPCVVAY 212 (261)
Q Consensus 154 ~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tl--Ea~~~G~P~Vv~~ 212 (261)
..+.+++.++... .+.+.++...+...++|+.||.+++..-.+++ ||++.|+|+.+..
T Consensus 197 ~~~~L~~~~~~~~-~~~~~~~~~~nPy~~~La~ad~i~VT~DSvSMvsEA~~tG~pV~v~~ 256 (311)
T PF06258_consen 197 AEAALRELLKDNP-GVYIWDGTGENPYLGFLAAADAIVVTEDSVSMVSEAAATGKPVYVLP 256 (311)
T ss_pred HHHHHHHhhcCCC-ceEEecCCCCCcHHHHHHhCCEEEEcCccHHHHHHHHHcCCCEEEec
Confidence 2333444333222 34344443345689999999999998866544 9999999988753
No 120
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.32 E-value=0.0075 Score=54.63 Aligned_cols=141 Identities=13% Similarity=0.114 Sum_probs=79.1
Q ss_pred HHHHhchhhheecCcchHHHHHHcCCC---eEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEE
Q 024872 36 KNLAAFVDHILCILPNEEAICRLNGLA---ATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISL 112 (261)
Q Consensus 36 ~~l~~~~d~v~~~~p~e~~~~~~~g~~---~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIll 112 (261)
..+.+.+|.+++.++...+++++.|++ +++++ ..+.... ...+. .++..++|++
T Consensus 118 ~~~~~~aD~iI~~S~~~~~~l~~~g~~~~~i~~~~--~~~~~~~------------------~~~~~---~~~~~~~i~y 174 (333)
T PRK09814 118 IDMLNLADVLIVHSKKMKDRLVEEGLTTDKIIVQG--IFDYLND------------------IELVK---TPSFQKKINF 174 (333)
T ss_pred HHHHHhCCEEEECCHHHHHHHHHcCCCcCceEecc--ccccccc------------------ccccc---cccCCceEEE
Confidence 446778999999999999999888863 33332 2221100 00000 1223445555
Q ss_pred EcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEE
Q 024872 113 LPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALC 192 (261)
Q Consensus 113 l~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~ 192 (261)
. |+-+ .. . .+ .+..++++|+++|.+... + +...++.+.+....+++..+|+. |+.+.
T Consensus 175 a-G~l~-k~----~-~l------~~~~~~~~l~i~G~g~~~--~-------~~~~~V~f~G~~~~eel~~~l~~-~~gLv 231 (333)
T PRK09814 175 A-GNLE-KS----P-FL------KNWSQGIKLTVFGPNPED--L-------ENSANISYKGWFDPEELPNELSK-GFGLV 231 (333)
T ss_pred e-cChh-hc----h-HH------HhcCCCCeEEEECCCccc--c-------ccCCCeEEecCCCHHHHHHHHhc-CcCeE
Confidence 4 5443 11 1 11 112467888888765321 1 11225666533225678888887 65554
Q ss_pred echH----------------HHHHHHHcCCCEEEEEcCChHHHHHHH
Q 024872 193 TSGT----------------VAVELQLARLPCVVAYRAHFLTEWFIR 223 (261)
Q Consensus 193 ~SGt----------------~tlEa~~~G~P~Vv~~~~~~~~~~ia~ 223 (261)
..+. -+.|.|++|+|+|+ .+.+.+...+-+
T Consensus 232 ~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~-~~~~~~~~~V~~ 277 (333)
T PRK09814 232 WDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIV-WSKAAIADFIVE 277 (333)
T ss_pred EcCCCCCccchhhhhccchHHHHHHHHCCCCEEE-CCCccHHHHHHh
Confidence 3321 14589999999886 566667766644
No 121
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.32 E-value=0.0051 Score=53.01 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=69.4
Q ss_pred cEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCC--CEEEecCCCc-chHHHHH
Q 024872 108 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV--PSILVPGGSS-NLKYDAF 184 (261)
Q Consensus 108 ~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~--~v~v~~g~~~-~~~~~~~ 184 (261)
..++.+ ||..+ .+..+.+++++..+.+..++.++++++.+... .+.+.....+.+. .+.+ .|... +++..++
T Consensus 200 ~~i~~~--g~~~~-~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~v~~-~g~~~~~~~~~~~ 274 (381)
T COG0438 200 FVVLYV--GRLDP-EKGLDLLIEAAAKLKKRGPDIKLVIVGDGPER-REELEKLAKKLGLEDNVKF-LGYVPDEELAELL 274 (381)
T ss_pred eEEEEe--eccCh-hcCHHHHHHHHHHhhhhcCCeEEEEEcCCCcc-HHHHHHHHHHhCCCCcEEE-ecccCHHHHHHHH
Confidence 456555 34433 34577899999999876666888888876432 1223334443332 3444 34432 4788899
Q ss_pred HHcceeEEec-----hHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 185 SASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 185 ~~aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
+.||+++.+| |...+|++++|+|+|. ...+.....+
T Consensus 275 ~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~-~~~~~~~e~~ 315 (381)
T COG0438 275 ASADVFVLPSLSEGFGLVLLEAMAAGTPVIA-SDVGGIPEVV 315 (381)
T ss_pred HhCCEEEeccccccchHHHHHHHhcCCcEEE-CCCCChHHHh
Confidence 9999999995 4556699999999875 5554544444
No 122
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=97.30 E-value=0.004 Score=49.85 Aligned_cols=113 Identities=9% Similarity=0.054 Sum_probs=67.3
Q ss_pred cEEEEEcCCcHHH--HHhhHHHH-HHHHHHHhhhCCCeEEEEEeCCCcc-hHHHHHHHHhcCCCCEEEecCCCcchHHHH
Q 024872 108 TVISLLPGSRLQE--VARMLPIF-AKTVELLKDSFPELITVIHVAPNRH-VENYITGLIQKWPVPSILVPGGSSNLKYDA 183 (261)
Q Consensus 108 ~vIlll~GSR~~e--i~~~~~~l-l~a~~~l~~~~~~~~~vi~~~~~~~-~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~ 183 (261)
..+.+.-|+-.-+ |+- .+ -+..++|.+ +.=.+++++.|++.. ..+..+...+..++.+..+. | ...+.+.
T Consensus 4 ~~vFVTVGtT~Fd~LI~~---Vl~~~~~~~L~k-~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~-f-~psl~e~ 77 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISC---VLSEEFLQELQK-RGFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYD-F-SPSLTED 77 (170)
T ss_pred eEEEEEeccccHHHHHHH---HcCHHHHHHHHH-cCccEEEEEecCCccCCCCHHHhhcccCCeEEEEEe-c-CccHHHH
Confidence 3456666776532 211 11 123344543 344689999887521 11222322233333333332 2 5678999
Q ss_pred HHHcceeEEechHHHH-HHHHcCCCEEEEEcCChHHH-H--HHHhcc
Q 024872 184 FSASRVALCTSGTVAV-ELQLARLPCVVAYRAHFLTE-W--FIRYKA 226 (261)
Q Consensus 184 ~~~aDl~i~~SGt~tl-Ea~~~G~P~Vv~~~~~~~~~-~--ia~~~~ 226 (261)
++.||++|+-+|+.++ |.+.+|+|.|++.+-..++. + +|+.|.
T Consensus 78 I~~AdlVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~ 124 (170)
T KOG3349|consen 78 IRSADLVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLA 124 (170)
T ss_pred HhhccEEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHH
Confidence 9999999999999888 99999999998876655432 2 455443
No 123
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=97.27 E-value=0.0022 Score=56.36 Aligned_cols=81 Identities=19% Similarity=0.278 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhhCCCeEEEEEeCCCcc---hHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechHHHHHHHH
Q 024872 127 IFAKTVELLKDSFPELITVIHVAPNRH---VENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQL 203 (261)
Q Consensus 127 ~ll~a~~~l~~~~~~~~~vi~~~~~~~---~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tlEa~~ 203 (261)
.+.+.+..+.+..|+.++++=-+|... ....+.+... . .++.++.. ..++.+++..||.+++-++|+-+||++
T Consensus 141 ~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~-~-~~~~~~~~--~~~~~~Ll~~s~~VvtinStvGlEAll 216 (269)
T PF05159_consen 141 DFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPN-L-PNVVIIDD--DVNLYELLEQSDAVVTINSTVGLEALL 216 (269)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhc-C-CCeEEECC--CCCHHHHHHhCCEEEEECCHHHHHHHH
Confidence 456667777777789999988776321 1122222211 1 13333332 237899999999999999999999999
Q ss_pred cCCCEEEE
Q 024872 204 ARLPCVVA 211 (261)
Q Consensus 204 ~G~P~Vv~ 211 (261)
+|+|+++.
T Consensus 217 ~gkpVi~~ 224 (269)
T PF05159_consen 217 HGKPVIVF 224 (269)
T ss_pred cCCceEEe
Confidence 99999864
No 124
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=97.20 E-value=0.005 Score=56.12 Aligned_cols=112 Identities=15% Similarity=0.165 Sum_probs=70.4
Q ss_pred HHhhcCCCCCCcEEEEEcCCcHHHHHhh-HHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCC----CEEE
Q 024872 97 FKNKYSVPSGATVISLLPGSRLQEVARM-LPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV----PSIL 171 (261)
Q Consensus 97 ~r~~l~l~~~~~vIlll~GSR~~ei~~~-~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~----~v~v 171 (261)
+...+++..+++.|++-||++....|+- ...+.+.++.|.+ .++++++.+|+.+ ++..++.....+. ++..
T Consensus 170 ~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~--~~~~vvl~Gg~~e--~~~~~~i~~~~~~~~~~~~~~ 245 (348)
T PRK10916 170 TCAAFSLSSERPIIGFCPGAEFGPAKRWPHYHYAELAQQLID--EGYQVVLFGSAKD--HEAGNEILAALNTEQQAWCRN 245 (348)
T ss_pred HHHHcCCCCCCCEEEEeCCCCCccccCCCHHHHHHHHHHHHH--CCCeEEEEeCHHh--HHHHHHHHHhcccccccceee
Confidence 3445566667789999999973112331 2256777777753 4788888877642 2333333332211 1222
Q ss_pred ecCC-CcchHHHHHHHcceeEEec-hHHHHHHHHcCCCEEEEEc
Q 024872 172 VPGG-SSNLKYDAFSASRVALCTS-GTVAVELQLARLPCVVAYR 213 (261)
Q Consensus 172 ~~g~-~~~~~~~~~~~aDl~i~~S-Gt~tlEa~~~G~P~Vv~~~ 213 (261)
+.|. .-.+...+++.||++|+.- |.+=+ |+++|+|+|.+|.
T Consensus 246 l~g~~sL~el~ali~~a~l~I~nDTGp~Hl-AaA~g~P~valfG 288 (348)
T PRK10916 246 LAGETQLEQAVILIAACKAIVTNDSGLMHV-AAALNRPLVALYG 288 (348)
T ss_pred ccCCCCHHHHHHHHHhCCEEEecCChHHHH-HHHhCCCEEEEEC
Confidence 3342 1357889999999999865 55555 9999999998874
No 125
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0053 Score=58.78 Aligned_cols=136 Identities=12% Similarity=0.147 Sum_probs=86.1
Q ss_pred HHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCC-CcchHHHHHHHHhcCCC---CEEE
Q 024872 96 DFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAP-NRHVENYITGLIQKWPV---PSIL 171 (261)
Q Consensus 96 ~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~-~~~~~~~l~~~~~~~~~---~v~v 171 (261)
--|..+|||++.-|.+. |...+ +..|.+.+..-+|.+.-|+-.|++-+++ +.+..+.++.+.++.|+ +.++
T Consensus 419 ~sR~~lglp~~avVf~c--~~n~~---K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f 493 (620)
T COG3914 419 PSRAQLGLPEDAVVFCC--FNNYF---KITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRF 493 (620)
T ss_pred cchhhcCCCCCeEEEEe--cCCcc---cCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheee
Confidence 44678999988644443 34443 3456777777777777899888777663 34455667777776665 3556
Q ss_pred ecCCCcchHHHHHHHcceeEEec----hHHHHHHHHcCCCEEEEEcCChHHHHHHHhcccCCccchhhhhcC
Q 024872 172 VPGGSSNLKYDAFSASRVALCTS----GTVAVELQLARLPCVVAYRAHFLTEWFIRYKAKIPYISLPNILLD 239 (261)
Q Consensus 172 ~~g~~~~~~~~~~~~aDl~i~~S----Gt~tlEa~~~G~P~Vv~~~~~~~~~~ia~~~~~~~~~~l~Nil~~ 239 (261)
.+....+++.+-+.-||+++=.- +|+++|+.-+|+|++. -.+..|--.+.-.++ .-.|++-.+++
T Consensus 494 ~p~~~~~~h~a~~~iADlvLDTyPY~g~TTa~daLwm~vPVlT-~~G~~FasR~~~si~--~~agi~e~vA~ 562 (620)
T COG3914 494 LPPAPNEDHRARYGIADLVLDTYPYGGHTTASDALWMGVPVLT-RVGEQFASRNGASIA--TNAGIPELVAD 562 (620)
T ss_pred cCCCCCHHHHHhhchhheeeecccCCCccchHHHHHhcCceee-eccHHHHHhhhHHHH--HhcCCchhhcC
Confidence 65444567889999999999643 4556699999999874 444333322211111 14455555554
No 126
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.03 E-value=0.0084 Score=53.78 Aligned_cols=140 Identities=16% Similarity=0.111 Sum_probs=80.1
Q ss_pred cCCCCCCcEEEEEcCCcHHHHHhhH--HHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcc
Q 024872 101 YSVPSGATVISLLPGSRLQEVARML--PIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSN 178 (261)
Q Consensus 101 l~l~~~~~vIlll~GSR~~ei~~~~--~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~ 178 (261)
++...+++.|++.||+... .+.. +.+.+.++.|.++ +.++++.+|+..+ ++..++..+..+. ..+.....-.
T Consensus 173 ~~~~~~~~~i~i~~gas~~--~K~wp~e~~~~l~~~l~~~--~~~~vl~~g~~~e-~~~~~~i~~~~~~-~~l~g~~sL~ 246 (319)
T TIGR02193 173 LGHALPAPYAVLLHATSRD--DKTWPEERWRELARLLLAR--GLQIVLPWGNDAE-KQRAERIAEALPG-AVVLPKMSLA 246 (319)
T ss_pred hhccCCCCEEEEEeCCCcc--cCCCCHHHHHHHHHHHHHC--CCeEEEeCCCHHH-HHHHHHHHhhCCC-CeecCCCCHH
Confidence 3444456788888887653 2333 3677777777653 6788877554222 2333333333221 2222221245
Q ss_pred hHHHHHHHcceeEEec-hHHHHHHHHcCCCEEEEEcCChHHHHHHHhcccCCccchhhhhcCCCCcccccCCCCCHHHHH
Q 024872 179 LKYDAFSASRVALCTS-GTVAVELQLARLPCVVAYRAHFLTEWFIRYKAKIPYISLPNILLDSPIIPEALLQACTPDTLT 257 (261)
Q Consensus 179 ~~~~~~~~aDl~i~~S-Gt~tlEa~~~G~P~Vv~~~~~~~~~~ia~~~~~~~~~~l~Nil~~~~i~pE~lq~~~~~~~i~ 257 (261)
+...+++.||++|+.- |.+=+ |+++|+|+|.++.......|- ||-.--.++.. +- .+..||+.+.
T Consensus 247 el~ali~~a~l~I~~DSgp~Hl-Aaa~g~P~i~lfg~t~p~~~~-------P~~~~~~~~~~-----~~-~~~I~~~~V~ 312 (319)
T TIGR02193 247 EVAALLAGADAVVGVDTGLTHL-AAALDKPTVTLYGATDPGRTG-------GYGKPNVALLG-----ES-GANPTPDEVL 312 (319)
T ss_pred HHHHHHHcCCEEEeCCChHHHH-HHHcCCCEEEEECCCCHhhcc-------cCCCCceEEcc-----Cc-cCCCCHHHHH
Confidence 7899999999999865 55555 899999999888543222211 12111111111 11 5688888888
Q ss_pred HHh
Q 024872 258 HLL 260 (261)
Q Consensus 258 ~~~ 260 (261)
+++
T Consensus 313 ~ai 315 (319)
T TIGR02193 313 AAL 315 (319)
T ss_pred HHH
Confidence 775
No 127
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.83 E-value=0.017 Score=52.51 Aligned_cols=105 Identities=13% Similarity=0.134 Sum_probs=66.6
Q ss_pred CCcEEEEEcCCcHHHHHh-hHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCC-CEEEecCCC-cchHHH
Q 024872 106 GATVISLLPGSRLQEVAR-MLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV-PSILVPGGS-SNLKYD 182 (261)
Q Consensus 106 ~~~vIlll~GSR~~ei~~-~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~-~v~v~~g~~-~~~~~~ 182 (261)
+++.|++.|||+.. .|+ ..+.+.+.++.|.+ .+.++++.++++++..+..++.....+. ++.-+.|.. -.++..
T Consensus 180 ~~~~i~i~p~a~~~-~K~Wp~e~~~~l~~~l~~--~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~a 256 (344)
T TIGR02201 180 GQNYIVIQPTSRWF-FKCWDNDRFSALIDALHA--RGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAA 256 (344)
T ss_pred CCCEEEEeCCCCcc-ccCCCHHHHHHHHHHHHh--CCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHH
Confidence 45788999999763 233 23466777777764 3688888887643222223333322221 222233321 357999
Q ss_pred HHHHcceeEEec-hHHHHHHHHcCCCEEEEEcC
Q 024872 183 AFSASRVALCTS-GTVAVELQLARLPCVVAYRA 214 (261)
Q Consensus 183 ~~~~aDl~i~~S-Gt~tlEa~~~G~P~Vv~~~~ 214 (261)
+++.||++|+.- |.+=+ |+++|+|+|.+|..
T Consensus 257 li~~a~l~Vs~DSGp~Hl-AaA~g~p~v~Lfgp 288 (344)
T TIGR02201 257 LIDHARLFIGVDSVPMHM-AAALGTPLVALFGP 288 (344)
T ss_pred HHHhCCEEEecCCHHHHH-HHHcCCCEEEEECC
Confidence 999999999965 55555 99999999988754
No 128
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.76 E-value=0.016 Score=52.87 Aligned_cols=104 Identities=10% Similarity=0.145 Sum_probs=66.0
Q ss_pred CCcEEEEEcCCcHHHHHhh-HHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCC-CCEEEecCC-CcchHHH
Q 024872 106 GATVISLLPGSRLQEVARM-LPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWP-VPSILVPGG-SSNLKYD 182 (261)
Q Consensus 106 ~~~vIlll~GSR~~ei~~~-~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~-~~v~v~~g~-~~~~~~~ 182 (261)
+++.|++.|||+.. .|+- .+.+.+.++.|.+ .++++++.+|+++...+..++..+... .++..+.|. .-.+...
T Consensus 182 ~~~~i~i~pga~~~-~K~Wp~e~fa~l~~~L~~--~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~a 258 (352)
T PRK10422 182 TQNYVVIQPTARQI-FKCWDNDKFSAVIDALQA--RGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGA 258 (352)
T ss_pred CCCeEEEecCCCcc-ccCCCHHHHHHHHHHHHH--CCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHH
Confidence 35789999999763 2331 2367777777754 368888888865322222233333211 122223342 2457899
Q ss_pred HHHHcceeEEec-hHHHHHHHHcCCCEEEEEc
Q 024872 183 AFSASRVALCTS-GTVAVELQLARLPCVVAYR 213 (261)
Q Consensus 183 ~~~~aDl~i~~S-Gt~tlEa~~~G~P~Vv~~~ 213 (261)
+++.||++|+-- |.+=+ |+++|+|+|.++.
T Consensus 259 li~~a~l~v~nDSGp~Hl-AaA~g~P~v~lfG 289 (352)
T PRK10422 259 LIDHAQLFIGVDSAPAHI-AAAVNTPLICLFG 289 (352)
T ss_pred HHHhCCEEEecCCHHHHH-HHHcCCCEEEEEC
Confidence 999999999865 55555 8999999998874
No 129
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=96.74 E-value=0.023 Score=54.77 Aligned_cols=89 Identities=15% Similarity=0.140 Sum_probs=55.4
Q ss_pred CcEEEEEcCCcHH--HH-HhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHH
Q 024872 107 ATVISLLPGSRLQ--EV-ARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDA 183 (261)
Q Consensus 107 ~~vIlll~GSR~~--ei-~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~ 183 (261)
+++|++.-||-.. .. .+....++++++.+ + .++++..++.. . . .+...++.+..-. .-.++
T Consensus 296 ~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l----~-~~viw~~~~~~-~-~------~~~p~Nv~i~~w~---Pq~~l 359 (507)
T PHA03392 296 NGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKL----P-YNVLWKYDGEV-E-A------INLPANVLTQKWF---PQRAV 359 (507)
T ss_pred CcEEEEECCCCCcCCCCCHHHHHHHHHHHHhC----C-CeEEEEECCCc-C-c------ccCCCceEEecCC---CHHHH
Confidence 3578888888531 00 11233455555443 4 58888876421 1 1 1223355554322 34678
Q ss_pred H--HHcceeEEechHHHH-HHHHcCCCEEEE
Q 024872 184 F--SASRVALCTSGTVAV-ELQLARLPCVVA 211 (261)
Q Consensus 184 ~--~~aDl~i~~SGt~tl-Ea~~~G~P~Vv~ 211 (261)
+ ..++++|+=.|..+. ||+.+|+|+|++
T Consensus 360 L~hp~v~~fItHGG~~s~~Eal~~GvP~v~i 390 (507)
T PHA03392 360 LKHKNVKAFVTQGGVQSTDEAIDALVPMVGL 390 (507)
T ss_pred hcCCCCCEEEecCCcccHHHHHHcCCCEEEC
Confidence 8 459999999998777 999999999985
No 130
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=96.60 E-value=0.036 Score=54.50 Aligned_cols=108 Identities=14% Similarity=0.127 Sum_probs=77.2
Q ss_pred CCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhh--hC--CCeEEEEEeCCCcc------hHHHHHHHHhc--CCCCEE
Q 024872 103 VPSGATVISLLPGSRLQEVARMLPIFAKTVELLKD--SF--PELITVIHVAPNRH------VENYITGLIQK--WPVPSI 170 (261)
Q Consensus 103 l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~--~~--~~~~~vi~~~~~~~------~~~~l~~~~~~--~~~~v~ 170 (261)
++++.+++.+. +|.++-|+ ...+++.+.++.+ .. .++|||+.|-+.+. +.+.+....++ .+.++.
T Consensus 385 ~dpd~~~ig~v--~Rl~~yKr-~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~ 461 (601)
T TIGR02094 385 LDPDVLTIGFA--RRFATYKR-ADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIV 461 (601)
T ss_pred cCCCCcEEEEE--Ecchhhhh-HHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEE
Confidence 45667777776 99998887 4668888888864 21 36899998866543 34444554444 444677
Q ss_pred EecCCCcchHHHHHHHcceeEE-e------chHHHHHHHHcCCCEEEEEc
Q 024872 171 LVPGGSSNLKYDAFSASRVALC-T------SGTVAVELQLARLPCVVAYR 213 (261)
Q Consensus 171 v~~g~~~~~~~~~~~~aDl~i~-~------SGt~tlEa~~~G~P~Vv~~~ 213 (261)
++.+|-..--..++++||+.+. + |||+.+=+|..|.+.+.+..
T Consensus 462 f~~~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~D 511 (601)
T TIGR02094 462 FLENYDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILD 511 (601)
T ss_pred EEcCCCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeeccc
Confidence 7777633346789999999999 4 49999999999999986644
No 131
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=96.58 E-value=0.0048 Score=58.57 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhhhC-----CCeEEEEEe--CCC----cc--hHHHHHHHHhcCCC--C-EEEecCCCcchHHHHHHHcc
Q 024872 125 LPIFAKTVELLKDSF-----PELITVIHV--APN----RH--VENYITGLIQKWPV--P-SILVPGGSSNLKYDAFSASR 188 (261)
Q Consensus 125 ~~~ll~a~~~l~~~~-----~~~~~vi~~--~~~----~~--~~~~l~~~~~~~~~--~-v~v~~g~~~~~~~~~~~~aD 188 (261)
+..+++++.++.+.. ++.++++.+ |-. ++ +.+.+..++++.+. + +.++.-..+...+.+++.+.
T Consensus 288 ~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt~ 367 (495)
T KOG0853|consen 288 QDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTK 367 (495)
T ss_pred ceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecCCchHHHHHHHHhcc
Confidence 445666777776554 456777777 211 11 22234455555533 2 34433322345577777777
Q ss_pred eeEEec-----hHHHHHHHHcCCCEEEEEcCCh
Q 024872 189 VALCTS-----GTVAVELQLARLPCVVAYRAHF 216 (261)
Q Consensus 189 l~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~ 216 (261)
.+...+ |.+++|||+||+|+|.+..+++
T Consensus 368 ~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP 400 (495)
T KOG0853|consen 368 GVLYQPANEHFGIVPIEAMACGLPVVATNNGGP 400 (495)
T ss_pred eEEecCCCCCccceeHHHHhcCCCEEEecCCCc
Confidence 777766 8899999999999998877764
No 132
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=96.35 E-value=0.04 Score=49.60 Aligned_cols=101 Identities=13% Similarity=0.197 Sum_probs=61.4
Q ss_pred CCcEEEEEcCCcHHHHHhhHH--HHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHH
Q 024872 106 GATVISLLPGSRLQEVARMLP--IFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDA 183 (261)
Q Consensus 106 ~~~vIlll~GSR~~ei~~~~~--~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~ 183 (261)
+++.|++.+||... .+..| .+.+.+..+.+ .++++++.+|+..+ .+..++..+... .+.+.....-.++..+
T Consensus 177 ~~~~i~~~~~~s~~--~k~Wp~e~~a~li~~l~~--~~~~ivl~~G~~~e-~~~~~~i~~~~~-~~~l~g~~sL~elaal 250 (322)
T PRK10964 177 AGPYLVFLHATTRD--DKHWPEAHWRELIGLLAP--SGLRIKLPWGAEHE-EQRAKRLAEGFP-YVEVLPKLSLEQVARV 250 (322)
T ss_pred CCCeEEEEeCCCcc--cccCCHHHHHHHHHHHHH--CCCeEEEeCCCHHH-HHHHHHHHccCC-cceecCCCCHHHHHHH
Confidence 45666666676542 23333 67788888864 36777775343222 233343333221 2333322224578999
Q ss_pred HHHcceeEEec-hHHHHHHHHcCCCEEEEEc
Q 024872 184 FSASRVALCTS-GTVAVELQLARLPCVVAYR 213 (261)
Q Consensus 184 ~~~aDl~i~~S-Gt~tlEa~~~G~P~Vv~~~ 213 (261)
++.||++|+.- |.+=+ |.++|+|+|.++.
T Consensus 251 i~~a~l~I~nDSGp~Hl-A~A~g~p~valfG 280 (322)
T PRK10964 251 LAGAKAVVSVDTGLSHL-TAALDRPNITLYG 280 (322)
T ss_pred HHhCCEEEecCCcHHHH-HHHhCCCEEEEEC
Confidence 99999999865 55444 9999999998874
No 133
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=96.34 E-value=0.043 Score=49.23 Aligned_cols=105 Identities=8% Similarity=-0.034 Sum_probs=65.7
Q ss_pred CCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCC---CcchHHHHHHHHhcC-C-CCEEEecCCC-cchHHHHHHHcc
Q 024872 115 GSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAP---NRHVENYITGLIQKW-P-VPSILVPGGS-SNLKYDAFSASR 188 (261)
Q Consensus 115 GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~---~~~~~~~l~~~~~~~-~-~~v~v~~g~~-~~~~~~~~~~aD 188 (261)
|..+...++++. +++++.+.. ..+++++++-|- +..+.+.+++..+++ + .++.++..+. .++-.++++.||
T Consensus 152 GNSgd~SN~Hie-~L~~l~~~~--~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~D 228 (322)
T PRK02797 152 GNSGDRSNRHIE-ALRALHQQF--GDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQCD 228 (322)
T ss_pred eCCCCCcccHHH-HHHHHHHHh--CCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHhCC
Confidence 666666666544 445554443 357999998874 333545555544443 3 2566654432 467889999999
Q ss_pred eeEEec----hHHHH-HHHHcCCCEEEEEcCChHHHHHHH
Q 024872 189 VALCTS----GTVAV-ELQLARLPCVVAYRAHFLTEWFIR 223 (261)
Q Consensus 189 l~i~~S----Gt~tl-Ea~~~G~P~Vv~~~~~~~~~~ia~ 223 (261)
+++.-- |..|+ =++.+|+|+++- +-+++-..+..
T Consensus 229 l~~f~~~RQQgiGnl~lLi~~G~~v~l~-r~n~fwqdl~e 267 (322)
T PRK02797 229 LGYFIFARQQGIGTLCLLIQLGKPVVLS-RDNPFWQDLTE 267 (322)
T ss_pred EEEEeechhhHHhHHHHHHHCCCcEEEe-cCCchHHHHHh
Confidence 999865 54455 699999999874 44444333443
No 134
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=96.20 E-value=0.25 Score=42.05 Aligned_cols=180 Identities=11% Similarity=0.055 Sum_probs=92.0
Q ss_pred hhhhcCCCCeEEEEeCCcc---ccccCCcchHHHHHhchhhheecCcchHHHHHHcCC--CeEEEcCCCccchhhhcCCC
Q 024872 7 YSHERLNGPAHFHYVAPSF---WAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGL--AATFVGHPVVEDCLELNLGK 81 (261)
Q Consensus 7 ~~~~~~~ip~~~~yv~p~~---waw~~g~~r~~~l~~~~d~v~~~~p~e~~~~~~~g~--~~~~vG~P~~d~~~~~~~~~ 81 (261)
.+++. |+|+++. +.++ ..+.. +...+++.+.+|.+.+--+.+.+.+++.|+ ++.+++.|... +..
T Consensus 94 ~~~~~-~~pv~~~--g~g~gp~~~~~~-~~~~~~~l~~~~~i~vRD~~S~~~l~~~g~~~~~~~~~D~af~-l~~----- 163 (286)
T PF04230_consen 94 LAKKL-GKPVIIL--GQGIGPFRSEEF-KKLLRRILSKADYISVRDEYSYELLKKLGISGNVKLVPDPAFL-LPP----- 163 (286)
T ss_pred HHHhc-CCCeEEE--CceECccCCHHH-HHHHHHHHhCCCEEEECCHHHHHHHHHcCCCCCcEEEeCchhh-cCc-----
Confidence 34444 9999643 3332 22221 234455666688888888888888888898 78899988651 110
Q ss_pred CCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCc-chHHHHHH
Q 024872 82 GPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNR-HVENYITG 160 (261)
Q Consensus 82 ~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~-~~~~~l~~ 160 (261)
......... .....+.+...+.. .-+.....+.+.+..+.+......++....... ........
T Consensus 164 ----------~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (286)
T PF04230_consen 164 ----------SYPDEDKSK----PKRNYISVSNSPSR-NNEEYIEEIAELIQRLLDKGYKIVLLPFSPSDDDEDDDDFNE 228 (286)
T ss_pred ----------ccccccccc----cccceeeeccccch-hhhhHHHHHHHHHHHhhcccceeEEEEeeeccchhhHHHHHh
Confidence 000000000 11122322222221 111122345556666655322333333332211 11111111
Q ss_pred HH--hcCCCCEEEecC-CCcchHHHHHHHcceeEEechHHHHHHHHcCCCEEEE
Q 024872 161 LI--QKWPVPSILVPG-GSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVA 211 (261)
Q Consensus 161 ~~--~~~~~~v~v~~g-~~~~~~~~~~~~aDl~i~~SGt~tlEa~~~G~P~Vv~ 211 (261)
.. .....++..+.. ....+..++++.||++|+..==+++=|+++|+|+|.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Is~RlH~~I~a~~~g~P~i~i 282 (286)
T PF04230_consen 229 IDIKAEKFFNVIIIDYSLSPDELLELISQADLVISMRLHGAILALSLGVPVIAI 282 (286)
T ss_pred hhhhcccccceeEecCCCCHHHHHHHHhcCCEEEecCCHHHHHHHHcCCCEEEE
Confidence 11 111112332222 2246789999999999999866666789999999975
No 135
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=96.19 E-value=0.033 Score=52.68 Aligned_cols=82 Identities=12% Similarity=0.096 Sum_probs=60.5
Q ss_pred HHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEec-----hHHHHHH
Q 024872 127 IFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTS-----GTVAVEL 201 (261)
Q Consensus 127 ~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~S-----Gt~tlEa 201 (261)
-.+++++++.+..|+++|=+ +.+++ +.+.+.++ .+. .++...+++...++.+++..||+.+..| |-+..||
T Consensus 292 ~~I~~i~~Lv~~lPd~~f~I-ga~te-~s~kL~~L-~~y-~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA 367 (438)
T TIGR02919 292 DQIEHLEEIVQALPDYHFHI-AALTE-MSSKLMSL-DKY-DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRA 367 (438)
T ss_pred HHHHHHHHHHHhCCCcEEEE-EecCc-ccHHHHHH-Hhc-CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHH
Confidence 46678888888889999988 44432 33456555 545 3677777764448999999999999988 3455599
Q ss_pred HHcCCCEEEEEc
Q 024872 202 QLARLPCVVAYR 213 (261)
Q Consensus 202 ~~~G~P~Vv~~~ 213 (261)
+..|+|++. |.
T Consensus 368 ~~~G~pI~a-fd 378 (438)
T TIGR02919 368 FEYNLLILG-FE 378 (438)
T ss_pred HHcCCcEEE-Ee
Confidence 999999875 43
No 136
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.07 E-value=0.53 Score=44.43 Aligned_cols=171 Identities=9% Similarity=-0.015 Sum_probs=90.6
Q ss_pred HHHHhchhhheecCcchHHHHHHcCCC---eEEEcCCCccchhhhcCCCCCCCcccccC-CCcHHHHhhcCCCCCCcEEE
Q 024872 36 KNLAAFVDHILCILPNEEAICRLNGLA---ATFVGHPVVEDCLELNLGKGPEPCELKME-GNSEDFKNKYSVPSGATVIS 111 (261)
Q Consensus 36 ~~l~~~~d~v~~~~p~e~~~~~~~g~~---~~~vG~P~~d~~~~~~~~~~~~~~~~~~~-~~~~~~r~~l~l~~~~~vIl 111 (261)
+.+.+.+|.|.+--+.+.+++++.|++ +..+..|... +.+.. .+ .........++...++++|+
T Consensus 171 r~vl~~~~~ItvRD~~S~~~Lk~lGv~~~~v~~~aDpAF~----L~~~~--------~~~~~~~~~~~~~~~~~~~~~Vg 238 (426)
T PRK10017 171 NYVFGHCDALILRESVSLDLMKRSNITTAKVEHGVDTAWL----VDHHT--------EDFTASYAVQHWLDVAAQQKTVA 238 (426)
T ss_pred HHHHhcCCEEEEccHHHHHHHHHhCCCccceEEecChhhh----CCccc--------cccccchhhhhhhcccccCCEEE
Confidence 334556899888888888999999985 4567777542 10000 00 00011112233344567777
Q ss_pred EEcCCcH--------HHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCC------CcchHHHHHHHHhcCC--CCEEEecC-
Q 024872 112 LLPGSRL--------QEVARMLPIFAKTVELLKDSFPELITVIHVAP------NRHVENYITGLIQKWP--VPSILVPG- 174 (261)
Q Consensus 112 ll~GSR~--------~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~------~~~~~~~l~~~~~~~~--~~v~v~~g- 174 (261)
+..-... .+ ......+.+++..+.++ +.+++++..- ..+.....++..+... .+++++.+
T Consensus 239 isvr~~~~~~~~~~~~~-~~Y~~~la~~i~~Li~~--g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~~~~~vi~~~ 315 (426)
T PRK10017 239 ITLRELAPFDKRLGTTQ-QAYEKAFAGVVNRIIDE--GYQVIALSTCTGIDSYNKDDRMVALNLRQHVSDPARYHVVMDE 315 (426)
T ss_pred EEecccccccccccccH-HHHHHHHHHHHHHHHHC--CCeEEEEecccCccCCCCchHHHHHHHHHhcccccceeEecCC
Confidence 7532221 10 11224566777777654 5555544321 1111121122222221 12344332
Q ss_pred CCcchHHHHHHHcceeEEechHHHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 175 GSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 175 ~~~~~~~~~~~~aDl~i~~SGt~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
+...++-.+++.||++|+.==-+++=|++.|+|+|.+.=.+....++
T Consensus 316 ~~~~e~~~iIs~~dl~ig~RlHa~I~a~~~gvP~i~i~Y~~K~~~~~ 362 (426)
T PRK10017 316 LNDLEMGKILGACELTVGTRLHSAIISMNFGTPAIAINYEHKSAGIM 362 (426)
T ss_pred CChHHHHHHHhhCCEEEEecchHHHHHHHcCCCEEEeeehHHHHHHH
Confidence 21335678999999999766456667999999999662234444444
No 137
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=95.90 E-value=0.079 Score=48.21 Aligned_cols=109 Identities=8% Similarity=0.002 Sum_probs=67.3
Q ss_pred CcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhh-CCCeEEEEEeCCC---cchHHHHHHHHhcC-CC-CEEEecCCC-cch
Q 024872 107 ATVISLLPGSRLQEVARMLPIFAKTVELLKDS-FPELITVIHVAPN---RHVENYITGLIQKW-PV-PSILVPGGS-SNL 179 (261)
Q Consensus 107 ~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~-~~~~~~vi~~~~~---~~~~~~l~~~~~~~-~~-~v~v~~g~~-~~~ 179 (261)
+.+|++ |..+...+++++ +++.|.+. ..+.+++++-+-. .++.+.+.+..+++ +. ++.++..+. .++
T Consensus 185 ~ltILv--GNSgd~sNnHie----aL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~e 258 (360)
T PF07429_consen 185 KLTILV--GNSGDPSNNHIE----ALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDE 258 (360)
T ss_pred ceEEEE--cCCCCCCccHHH----HHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHH
Confidence 334443 666666666544 34444432 2468999988742 33444455544443 32 455554332 568
Q ss_pred HHHHHHHcceeEEec----hHHHH-HHHHcCCCEEEEEcCChHHHHHH
Q 024872 180 KYDAFSASRVALCTS----GTVAV-ELQLARLPCVVAYRAHFLTEWFI 222 (261)
Q Consensus 180 ~~~~~~~aDl~i~~S----Gt~tl-Ea~~~G~P~Vv~~~~~~~~~~ia 222 (261)
-.++++.||+++... |..|+ =++.+|+|+++ .+-+++-..+.
T Consensus 259 Yl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L-~~~np~~~~l~ 305 (360)
T PF07429_consen 259 YLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFL-SRDNPFWQDLK 305 (360)
T ss_pred HHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEE-ecCChHHHHHH
Confidence 889999999999977 55555 79999999886 55555544443
No 138
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=95.78 E-value=0.064 Score=51.84 Aligned_cols=89 Identities=12% Similarity=0.057 Sum_probs=59.9
Q ss_pred cHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCc-chHHHHHHHHhcCC-----------------------------
Q 024872 117 RLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNR-HVENYITGLIQKWP----------------------------- 166 (261)
Q Consensus 117 R~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~-~~~~~l~~~~~~~~----------------------------- 166 (261)
|.. -+ .+..+++++.++.++.|++++.+-|-++. +..+.+++.+++.+
T Consensus 329 rL~-ek-~~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (519)
T TIGR03713 329 GLS-DE-ELQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQTDEEQK 406 (519)
T ss_pred CCC-hH-HHHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcccchhhcc
Confidence 553 23 35678889999988899999987664432 23334433332221
Q ss_pred --CCEEEecCCCcc--hHHHHHHHcceeEEec---hH-HHHHHHHcCCCEE
Q 024872 167 --VPSILVPGGSSN--LKYDAFSASRVALCTS---GT-VAVELQLARLPCV 209 (261)
Q Consensus 167 --~~v~v~~g~~~~--~~~~~~~~aDl~i~~S---Gt-~tlEa~~~G~P~V 209 (261)
..+.+ .|+ .. ++.+.+..+.++|..| |- +.+||++.|+|+|
T Consensus 407 ~~~~v~f-~gy-~~e~dl~~~~~~arl~id~s~~eg~~~~ieAiS~GiPqI 455 (519)
T TIGR03713 407 EKERIAF-TTL-TNEEDLISALDKLRLIIDLSKEPDLYTQISGISAGIPQI 455 (519)
T ss_pred cccEEEE-Eec-CCHHHHHHHHhhheEEEECCCCCChHHHHHHHHcCCCee
Confidence 12333 354 34 8999999999999999 33 4449999999998
No 139
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=95.20 E-value=0.24 Score=51.03 Aligned_cols=105 Identities=18% Similarity=0.262 Sum_probs=62.8
Q ss_pred HHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeE--EEEE--eCCC----cchHH---HHHHHHhc
Q 024872 96 DFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELI--TVIH--VAPN----RHVEN---YITGLIQK 164 (261)
Q Consensus 96 ~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~--~vi~--~~~~----~~~~~---~l~~~~~~ 164 (261)
+++++++ ++++|+ +-.|....| +++.-++|++++.+++|+++ ++++ +-++ ..+++ .+.+.+.+
T Consensus 355 ~lr~~~~---g~kiIl--gVDRLD~~K-GI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~r 428 (934)
T PLN03064 355 ELKERFA---GRKVML--GVDRLDMIK-GIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGR 428 (934)
T ss_pred HHHHHhC---CceEEE--Eeecccccc-CHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHH
Confidence 4455544 445444 347777655 46778899999988888764 3332 2221 12222 12222221
Q ss_pred ----CCC----CEEEecC-CCcchHHHHHHHcceeEEec-----hHHHHHHHHcCC
Q 024872 165 ----WPV----PSILVPG-GSSNLKYDAFSASRVALCTS-----GTVAVELQLARL 206 (261)
Q Consensus 165 ----~~~----~v~v~~g-~~~~~~~~~~~~aDl~i~~S-----Gt~tlEa~~~G~ 206 (261)
++. +++++.. ...++...+|+.||+++.+| +.+..|.++|+.
T Consensus 429 IN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~ 484 (934)
T PLN03064 429 INGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQD 484 (934)
T ss_pred HhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhc
Confidence 111 3444322 22568999999999999999 567779999955
No 140
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=94.87 E-value=1.2 Score=36.24 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=45.0
Q ss_pred HHHHHHHcceeEEech---HH-HH-HHHHcCCCEEEEEcCChHHHHHHHhcccCCccchhhhhcCCCCcccccCCCCCHH
Q 024872 180 KYDAFSASRVALCTSG---TV-AV-ELQLARLPCVVAYRAHFLTEWFIRYKAKIPYISLPNILLDSPIIPEALLQACTPD 254 (261)
Q Consensus 180 ~~~~~~~aDl~i~~SG---t~-tl-Ea~~~G~P~Vv~~~~~~~~~~ia~~~~~~~~~~l~Nil~~~~i~pE~lq~~~~~~ 254 (261)
..-+...||.+|..+| |. .+ |++..++|+++....+.++..+... +.+....++++.-.-+++
T Consensus 85 k~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~~g~~~~~l~~~------------~~~~~~~~~~~~~~~~~~ 152 (159)
T TIGR00725 85 NFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRGTGGWTDRLSQV------------LIEGVYLDERVIVEITPA 152 (159)
T ss_pred HHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEECCCcchHHHHHH------------HhccccccceeEecCCHH
Confidence 4556677999999874 32 33 8889999998766666666655431 222333444566677888
Q ss_pred HHHHHh
Q 024872 255 TLTHLL 260 (261)
Q Consensus 255 ~i~~~~ 260 (261)
.+.+.+
T Consensus 153 e~~~~~ 158 (159)
T TIGR00725 153 EAVKLA 158 (159)
T ss_pred HHHHhh
Confidence 877654
No 141
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=94.76 E-value=0.46 Score=39.39 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=33.9
Q ss_pred chHHHHHHHcceeEEechH-HHH-HHHH---------cCCCEEEEEcCChHHHHHH--HhcccCCccc
Q 024872 178 NLKYDAFSASRVALCTSGT-VAV-ELQL---------ARLPCVVAYRAHFLTEWFI--RYKAKIPYIS 232 (261)
Q Consensus 178 ~~~~~~~~~aDl~i~~SGt-~tl-Ea~~---------~G~P~Vv~~~~~~~~~~ia--~~~~~~~~~~ 232 (261)
+-...++..||.+|+-+|+ .|+ |++. .++|+++....+.++..+. +.++...|++
T Consensus 88 ~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~ 155 (178)
T TIGR00730 88 ERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFIS 155 (178)
T ss_pred HHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCC
Confidence 3456678889999999964 566 6543 3999887432333343332 3455555554
No 142
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=94.70 E-value=0.68 Score=43.14 Aligned_cols=162 Identities=14% Similarity=0.090 Sum_probs=91.9
Q ss_pred chhhheecCcchHHHH-HHcCC---CeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCC
Q 024872 41 FVDHILCILPNEEAIC-RLNGL---AATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGS 116 (261)
Q Consensus 41 ~~d~v~~~~p~e~~~~-~~~g~---~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GS 116 (261)
.-|-+.+..|.....+ +..|. ++..+|.|..|.+..-.. ........+..++++.++++|+..|==
T Consensus 148 ~~dy~~~~~~~~~~if~~~f~~~~~~i~~~G~Pr~D~~~~~~~----------~~~~~~~~~~~~~~~~~k~vIlyaPTf 217 (388)
T COG1887 148 HWDYLISPNPESTAIFAEAFNIDKENILETGYPRNDKLFDEAG----------KTEDILLIQLALPLPQDKKVILYAPTF 217 (388)
T ss_pred eeeeeeeCChhhHHHHHHHhcccccceeecCcccchhhhhhcc----------chhhhHHHhhhcCCcccCceEEecCCc
Confidence 3555666666665544 33344 367899998886542110 011122245577888899999998865
Q ss_pred cHHH-----HHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeE
Q 024872 117 RLQE-----VARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVAL 191 (261)
Q Consensus 117 R~~e-----i~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i 191 (261)
|+.+ .....+.-.+.+.+...+ .++.+++--++... +.+.... .....+..+.. ..+..++|..+|++|
T Consensus 218 r~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~ii~k~Hp~is--~~~~~~~-~~~~~~~~vs~--~~di~dll~~sDiLI 291 (388)
T COG1887 218 RDNDVLIGTQFFNLDIDIEKLKEKLGE-NEYVIIVKPHPLIS--DKIDKRY-ALDDFVLDVSD--NADINDLLLVSDILI 291 (388)
T ss_pred cCCccccchhhhhhhhhHHHHHHhhcc-CCeEEEEecChhhh--hhhhhhh-hccceeEeccc--chhHHHHHhhhCEEE
Confidence 5543 111122333333333321 46776665554221 1111110 11111222222 358999999999999
Q ss_pred EechHHHHHHHHcCCCEEEEEcCChHHH
Q 024872 192 CTSGTVAVELQLARLPCVVAYRAHFLTE 219 (261)
Q Consensus 192 ~~SGt~tlEa~~~G~P~Vv~~~~~~~~~ 219 (261)
|-=.++..|.|.+.+|++. |..+.-.|
T Consensus 292 TDySSv~fdf~~l~KPiif-y~~D~~~y 318 (388)
T COG1887 292 TDYSSVIFDFMLLDKPIIF-YTYDLEQY 318 (388)
T ss_pred eechHHHHHHHHhcCcEEE-EecChHHH
Confidence 9998888899999999885 65554444
No 143
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=94.23 E-value=0.41 Score=48.43 Aligned_cols=109 Identities=14% Similarity=0.093 Sum_probs=72.9
Q ss_pred CCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhh--C--CCeEEEEEeCCCcchH------HHHHHHHh--cCCCCEE
Q 024872 103 VPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDS--F--PELITVIHVAPNRHVE------NYITGLIQ--KWPVPSI 170 (261)
Q Consensus 103 l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~--~--~~~~~vi~~~~~~~~~------~~l~~~~~--~~~~~v~ 170 (261)
++++..+|.+. +|-++-|+ ...+++.+.++.+. . .++|||+.|-..+... +.+.+..+ +.+.++.
T Consensus 474 ldpd~ltigfa--rRfa~YKR-~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVv 550 (778)
T cd04299 474 LDPNVLTIGFA--RRFATYKR-ATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIV 550 (778)
T ss_pred cCCCccEEeee--ecchhhhh-HHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEE
Confidence 45666677765 88888887 45677877777441 1 2589998875442211 12333333 2333677
Q ss_pred EecCCCcchHHHHHHHcceeEEec-------hHHHHHHHHcCCCEEEEEcC
Q 024872 171 LVPGGSSNLKYDAFSASRVALCTS-------GTVAVELQLARLPCVVAYRA 214 (261)
Q Consensus 171 v~~g~~~~~~~~~~~~aDl~i~~S-------Gt~tlEa~~~G~P~Vv~~~~ 214 (261)
++.+|-..--..++++||+.+-.| ||+.+=+|.-|.+.+-+..+
T Consensus 551 fle~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDG 601 (778)
T cd04299 551 FLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDG 601 (778)
T ss_pred EEcCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccC
Confidence 777773334577899999999865 99999999999999866443
No 144
>PLN02210 UDP-glucosyl transferase
Probab=93.66 E-value=0.51 Score=44.88 Aligned_cols=113 Identities=13% Similarity=0.110 Sum_probs=62.3
Q ss_pred CCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcc--hHHHHHHHHhcCCCCEEEecCCCcchHH
Q 024872 104 PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRH--VENYITGLIQKWPVPSILVPGGSSNLKY 181 (261)
Q Consensus 104 ~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~--~~~~l~~~~~~~~~~v~v~~g~~~~~~~ 181 (261)
.+++++|.+.-||....- -+.+.+.+..|.. .+.+|+|+..+... ..+.+++.... .+..+. +.. .-.
T Consensus 266 ~~~~svvyvsfGS~~~~~---~~~~~e~a~~l~~--~~~~flw~~~~~~~~~~~~~~~~~~~~--~~g~v~-~w~--PQ~ 335 (456)
T PLN02210 266 QARSSVVYISFGSMLESL---ENQVETIAKALKN--RGVPFLWVIRPKEKAQNVQVLQEMVKE--GQGVVL-EWS--PQE 335 (456)
T ss_pred CCCCceEEEEecccccCC---HHHHHHHHHHHHh--CCCCEEEEEeCCccccchhhHHhhccC--CCeEEE-ecC--CHH
Confidence 345678888888864311 1234444444543 35688888764211 11122332210 122233 221 345
Q ss_pred HHHHHcc--eeEEechHHHH-HHHHcCCCEEEEEcCChHHHHHHHhccc
Q 024872 182 DAFSASR--VALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFIRYKAK 227 (261)
Q Consensus 182 ~~~~~aD--l~i~~SGt~tl-Ea~~~G~P~Vv~~~~~~~~~~ia~~~~~ 227 (261)
++++.++ ++|+=.|-.+. |++.+|+|+|.. +...--...+++++.
T Consensus 336 ~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~-P~~~DQ~~na~~~~~ 383 (456)
T PLN02210 336 KILSHMAISCFVTHCGWNSTIETVVAGVPVVAY-PSWTDQPIDARLLVD 383 (456)
T ss_pred HHhcCcCcCeEEeeCCcccHHHHHHcCCCEEec-ccccccHHHHHHHHH
Confidence 7888887 99999997555 999999999964 332222223665553
No 145
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.64 E-value=0.63 Score=45.59 Aligned_cols=133 Identities=15% Similarity=0.175 Sum_probs=80.7
Q ss_pred HHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCC---CEEEec
Q 024872 97 FKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV---PSILVP 173 (261)
Q Consensus 97 ~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~---~v~v~~ 173 (261)
-|..+|+|+|.-+.. +-.+ .-++-|..++...++.+..|+-.+++.+=|... ++.++..+.+.|+ ++.+.+
T Consensus 749 ~r~~y~Lp~d~vvf~----~FNq-LyKidP~~l~~W~~ILk~VPnS~LwllrfPa~g-e~rf~ty~~~~Gl~p~riifs~ 822 (966)
T KOG4626|consen 749 TRSQYGLPEDAVVFC----NFNQ-LYKIDPSTLQMWANILKRVPNSVLWLLRFPAVG-EQRFRTYAEQLGLEPDRIIFSP 822 (966)
T ss_pred CCCCCCCCCCeEEEe----echh-hhcCCHHHHHHHHHHHHhCCcceeEEEeccccc-hHHHHHHHHHhCCCccceeecc
Confidence 467889998864433 3333 345668899999999988899777765544322 2345555555555 233222
Q ss_pred CCCcchHHHHHHHcceeEEec---hHHHH-HHHHcCCCEEEEEcCChHHHHHH-HhcccCCccchhhhhcC
Q 024872 174 GGSSNLKYDAFSASRVALCTS---GTVAV-ELQLARLPCVVAYRAHFLTEWFI-RYKAKIPYISLPNILLD 239 (261)
Q Consensus 174 g~~~~~~~~~~~~aDl~i~~S---Gt~tl-Ea~~~G~P~Vv~~~~~~~~~~ia-~~~~~~~~~~l~Nil~~ 239 (261)
--..++--...+-+|+.+-.+ |++|- |.+-.|+|||. -++..+-..+| ..+. -.|++-++++
T Consensus 823 va~k~eHvrr~~LaDv~LDTplcnGhTTg~dvLw~GvPmVT-mpge~lAsrVa~Sll~---~~Gl~hliak 889 (966)
T KOG4626|consen 823 VAAKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGVPMVT-MPGETLASRVAASLLT---ALGLGHLIAK 889 (966)
T ss_pred ccchHHHHHhhhhhhhcccCcCcCCcccchhhhccCCceee-cccHHHHHHHHHHHHH---HcccHHHHhh
Confidence 100223334455677776544 77666 99999999985 45555555553 3444 4566777764
No 146
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=92.62 E-value=1.6 Score=41.56 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=52.1
Q ss_pred HHHHhhcCCCCCCcEEEEEcCCcHHH-HHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEec
Q 024872 95 EDFKNKYSVPSGATVISLLPGSRLQE-VARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVP 173 (261)
Q Consensus 95 ~~~r~~l~l~~~~~vIlll~GSR~~e-i~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~ 173 (261)
++..+.+.-+.++.+|.+.-||.... ..+....+.++++ +.|. +|+|...+.. . ..+. .++.+..
T Consensus 264 ~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~~~~----~~~~-~~iW~~~~~~-~-~~l~-------~n~~~~~ 329 (500)
T PF00201_consen 264 EELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAEAFE----NLPQ-RFIWKYEGEP-P-ENLP-------KNVLIVK 329 (500)
T ss_dssp HHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHHHHH----CSTT-EEEEEETCSH-G-CHHH-------TTEEEES
T ss_pred cccchhhhccCCCCEEEEecCcccchhHHHHHHHHHHHHh----hCCC-cccccccccc-c-cccc-------ceEEEec
Confidence 34444444324678888888886421 1111222333333 3455 8999887521 1 1122 1454442
Q ss_pred CCCcchHHHHHH--HcceeEEechHHHH-HHHHcCCCEEEE
Q 024872 174 GGSSNLKYDAFS--ASRVALCTSGTVAV-ELQLARLPCVVA 211 (261)
Q Consensus 174 g~~~~~~~~~~~--~aDl~i~~SGt~tl-Ea~~~G~P~Vv~ 211 (261)
.. .-.++++ ..+++||=.|..++ ||+.+|+|||.+
T Consensus 330 -W~--PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~ 367 (500)
T PF00201_consen 330 -WL--PQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGI 367 (500)
T ss_dssp -S----HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-
T ss_pred -cc--cchhhhhcccceeeeeccccchhhhhhhccCCccCC
Confidence 21 2357886 45788988897666 999999999974
No 147
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=92.09 E-value=1 Score=33.18 Aligned_cols=33 Identities=6% Similarity=0.058 Sum_probs=24.4
Q ss_pred HHHHHHHcceeEEechH--------HHHHHHHcCCCEEEEE
Q 024872 180 KYDAFSASRVALCTSGT--------VAVELQLARLPCVVAY 212 (261)
Q Consensus 180 ~~~~~~~aDl~i~~SGt--------~tlEa~~~G~P~Vv~~ 212 (261)
++..+..||++|...+. +--+|--.|+|++.+.
T Consensus 42 l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 67778888999888853 2227788899998753
No 148
>PLN02448 UDP-glycosyltransferase family protein
Probab=92.06 E-value=0.71 Score=43.92 Aligned_cols=109 Identities=12% Similarity=0.066 Sum_probs=60.2
Q ss_pred CCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHH
Q 024872 104 PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDA 183 (261)
Q Consensus 104 ~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~ 183 (261)
.+++++|.+.-||...- ..+.+.+.+..|.+ .+..|||+..+.. .. +++...+ +..+. +.. .-.++
T Consensus 271 ~~~~~vvyvsfGs~~~~---~~~~~~~~~~~l~~--~~~~~lw~~~~~~--~~-~~~~~~~---~~~v~-~w~--pQ~~i 336 (459)
T PLN02448 271 QPEGSVLYVSLGSFLSV---SSAQMDEIAAGLRD--SGVRFLWVARGEA--SR-LKEICGD---MGLVV-PWC--DQLKV 336 (459)
T ss_pred CCCCceEEEeecccccC---CHHHHHHHHHHHHh--CCCCEEEEEcCch--hh-HhHhccC---CEEEe-ccC--CHHHH
Confidence 34567888887886421 11233334444443 3568888764321 11 2222221 33333 221 34678
Q ss_pred HHHcce--eEEechHHHH-HHHHcCCCEEEEEcCChHHHHHHHhccc
Q 024872 184 FSASRV--ALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFIRYKAK 227 (261)
Q Consensus 184 ~~~aDl--~i~~SGt~tl-Ea~~~G~P~Vv~~~~~~~~~~ia~~~~~ 227 (261)
++.+++ +|+-.|-.+. |++.+|+|+|+. +...--...++++++
T Consensus 337 L~h~~v~~fvtHgG~nS~~eal~~GvP~l~~-P~~~DQ~~na~~v~~ 382 (459)
T PLN02448 337 LCHSSVGGFWTHCGWNSTLEAVFAGVPMLTF-PLFWDQPLNSKLIVE 382 (459)
T ss_pred hccCccceEEecCchhHHHHHHHcCCCEEec-cccccchhhHHHHHH
Confidence 888776 8888887655 999999999974 332222223555543
No 149
>PLN03007 UDP-glucosyltransferase family protein
Probab=92.02 E-value=0.59 Score=44.75 Aligned_cols=98 Identities=16% Similarity=0.002 Sum_probs=55.8
Q ss_pred CCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcch-------HHHHHHHHhcCCCCEEEecCCC
Q 024872 104 PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHV-------ENYITGLIQKWPVPSILVPGGS 176 (261)
Q Consensus 104 ~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~-------~~~l~~~~~~~~~~v~v~~g~~ 176 (261)
.+++.+|.+.-||...- ..+.+.+.+..|.. .+..|+|+..+.... -+-+++... +.++.+. +..
T Consensus 282 ~~~~svvyvsfGS~~~~---~~~~~~~~~~~l~~--~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~--~~g~~v~-~w~ 353 (482)
T PLN03007 282 KKPDSVIYLSFGSVASF---KNEQLFEIAAGLEG--SGQNFIWVVRKNENQGEKEEWLPEGFEERTK--GKGLIIR-GWA 353 (482)
T ss_pred CCCCceEEEeecCCcCC---CHHHHHHHHHHHHH--CCCCEEEEEecCCcccchhhcCCHHHHHHhc--cCCEEEe-cCC
Confidence 34566888877886421 11234555555543 356888887642111 001111111 1233332 221
Q ss_pred cchHHHHHHHcce--eEEechHHHH-HHHHcCCCEEEE
Q 024872 177 SNLKYDAFSASRV--ALCTSGTVAV-ELQLARLPCVVA 211 (261)
Q Consensus 177 ~~~~~~~~~~aDl--~i~~SGt~tl-Ea~~~G~P~Vv~ 211 (261)
.-.++++.+++ +|+=.|-.+. |++.+|+|+|..
T Consensus 354 --PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~ 389 (482)
T PLN03007 354 --PQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTW 389 (482)
T ss_pred --CHHHHhccCccceeeecCcchHHHHHHHcCCCeeec
Confidence 34678888876 9988897555 999999999974
No 150
>PLN02167 UDP-glycosyltransferase family protein
Probab=91.95 E-value=0.57 Score=44.77 Aligned_cols=104 Identities=11% Similarity=0.022 Sum_probs=55.6
Q ss_pred HHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcc--------hHHHHHHHHhcCCCC
Q 024872 97 FKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRH--------VENYITGLIQKWPVP 168 (261)
Q Consensus 97 ~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~--------~~~~l~~~~~~~~~~ 168 (261)
..+-+.-.+.+.+|.+.-||...- . .+.+.+.+..|.+ .+.+|+|+..+... +-+-+.+..++ +
T Consensus 270 ~~~wld~~~~~svvyvsfGS~~~~-~--~~~~~ela~~l~~--~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~---r 341 (475)
T PLN02167 270 IMRWLDDQPESSVVFLCFGSLGSL-P--APQIKEIAQALEL--VGCRFLWSIRTNPAEYASPYEPLPEGFMDRVMG---R 341 (475)
T ss_pred HHHHHhcCCCCceEEEeecccccC-C--HHHHHHHHHHHHh--CCCcEEEEEecCcccccchhhhCChHHHHHhcc---C
Confidence 333333344556888877887431 1 1234444444433 25688888653211 00011111221 2
Q ss_pred EEEecCCCcchHHHHHHH--cceeEEechHH-HHHHHHcCCCEEEE
Q 024872 169 SILVPGGSSNLKYDAFSA--SRVALCTSGTV-AVELQLARLPCVVA 211 (261)
Q Consensus 169 v~v~~g~~~~~~~~~~~~--aDl~i~~SGt~-tlEa~~~G~P~Vv~ 211 (261)
..+. +.. .-.++++. .+.+|+=.|-. |+|++.+|+|||+.
T Consensus 342 g~v~-~w~--PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~ 384 (475)
T PLN02167 342 GLVC-GWA--PQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATW 384 (475)
T ss_pred eeee-ccC--CHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEec
Confidence 2222 221 34567866 55799999975 55999999999964
No 151
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=91.74 E-value=4.4 Score=36.44 Aligned_cols=100 Identities=11% Similarity=0.132 Sum_probs=58.5
Q ss_pred CCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchH-HHHHHHHhcCCCCEEEecCCCcchHHHHH
Q 024872 106 GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVE-NYITGLIQKWPVPSILVPGGSSNLKYDAF 184 (261)
Q Consensus 106 ~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~-~~l~~~~~~~~~~v~v~~g~~~~~~~~~~ 184 (261)
+.-+||..+-|+- +.+ .+.+|. ++..++++++.-+. +..+ ..+-..+.+.++++.++++ ..+..+|
T Consensus 115 ~g~~ILT~~~S~t--v~~---~l~~a~----~~~~~f~V~v~Esr-P~~~G~~~a~~L~~~gI~vtlI~D---sa~~~~m 181 (301)
T TIGR00511 115 DGDVVMTHCNSEA--ALS---VIKTAF----EQGKDIEVIATETR-PRKQGHITAKELRDYGIPVTLIVD---SAVRYFM 181 (301)
T ss_pred CCCEEEEECCcHH--HHH---HHHHHH----HcCCcEEEEEecCC-CcchHHHHHHHHHHCCCCEEEEeh---hHHHHHH
Confidence 3447887766643 222 233332 23346776654443 2221 1123334556788888764 3678899
Q ss_pred HHcceeEEec-------------hHHHH--HHHHcCCCEEEEEcCChHH
Q 024872 185 SASRVALCTS-------------GTVAV--ELQLARLPCVVAYRAHFLT 218 (261)
Q Consensus 185 ~~aDl~i~~S-------------Gt~tl--Ea~~~G~P~Vv~~~~~~~~ 218 (261)
+.+|.++.-+ ||..+ =|-.+++|++++-....++
T Consensus 182 ~~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~~~vPv~V~a~~~K~~ 230 (301)
T TIGR00511 182 KEVDHVVVGADAITANGALINKIGTSQLALAAREARVPFMVAAETYKFH 230 (301)
T ss_pred HhCCEEEECccEEecCCCEEEHHhHHHHHHHHHHhCCCEEEEcccceec
Confidence 9999998743 66544 5667899999875544443
No 152
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=91.54 E-value=0.86 Score=43.65 Aligned_cols=101 Identities=13% Similarity=0.045 Sum_probs=56.7
Q ss_pred cCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcch----H---HHHHHHHhcCCCCEEEec
Q 024872 101 YSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHV----E---NYITGLIQKWPVPSILVP 173 (261)
Q Consensus 101 l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~----~---~~l~~~~~~~~~~v~v~~ 173 (261)
+.-.+++++|.+.-||....-. +.+.+.+..|.+ .+..|+|+..+..+. . +-+.+..++- .+.+.
T Consensus 277 Ld~~~~~svVyvsfGS~~~~~~---~~~~ela~gL~~--~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~--g~~v~- 348 (477)
T PLN02863 277 LDTCEDHKVVYVCFGSQVVLTK---EQMEALASGLEK--SGVHFIWCVKEPVNEESDYSNIPSGFEDRVAGR--GLVIR- 348 (477)
T ss_pred HhcCCCCceEEEEeeceecCCH---HHHHHHHHHHHh--CCCcEEEEECCCcccccchhhCCHHHHHHhccC--CEEec-
Confidence 3334556788888888753111 234444444543 356889888632110 0 0111112211 23322
Q ss_pred CCCcchHHHHHHH--cceeEEechHHHH-HHHHcCCCEEEE
Q 024872 174 GGSSNLKYDAFSA--SRVALCTSGTVAV-ELQLARLPCVVA 211 (261)
Q Consensus 174 g~~~~~~~~~~~~--aDl~i~~SGt~tl-Ea~~~G~P~Vv~ 211 (261)
+.. .-.++++. .+++|+=.|-.+. |++++|+|+|+.
T Consensus 349 ~w~--PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~ 387 (477)
T PLN02863 349 GWA--PQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAW 387 (477)
T ss_pred CCC--CHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeC
Confidence 221 23567775 7789999887555 999999999964
No 153
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=90.94 E-value=2.6 Score=37.20 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=52.9
Q ss_pred CCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHH-HHHHHHhcCCCCEEEecCCCcchHHHHH
Q 024872 106 GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVEN-YITGLIQKWPVPSILVPGGSSNLKYDAF 184 (261)
Q Consensus 106 ~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~-~l~~~~~~~~~~v~v~~g~~~~~~~~~~ 184 (261)
+.-+|+..+-|+. +. +.+....+...++++++.-+. +..+- .+-..+.+.++++.++++ ..+..+|
T Consensus 107 ~~~~ILT~~~S~~--v~-------~~l~~a~~~~~~~~V~v~es~-P~~eG~~~a~~L~~~gi~v~~i~d---~~~~~~m 173 (282)
T PF01008_consen 107 DGDTILTHGYSST--VE-------RFLLSAKKKGKKFRVIVLESR-PYNEGRLMAKELAEAGIPVTLIPD---SAVGYVM 173 (282)
T ss_dssp TTEEEEEES--SH--HH-------HHHHHHHHTTEEEEEEEE--T-TTTHHHTHHHHHHHTT-EEEEE-G---GGHHHHH
T ss_pred CCeEEEEeCCchH--HH-------HHHHHHHHcCCeEEEEEccCC-cchhhhhHHHHhhhcceeEEEEec---hHHHHHH
Confidence 4557888866654 22 222233333346777665543 22111 122234455777887763 4689999
Q ss_pred HH-cceeEEec-------------hHHHH--HHHHcCCCEEEEEcCChH
Q 024872 185 SA-SRVALCTS-------------GTVAV--ELQLARLPCVVAYRAHFL 217 (261)
Q Consensus 185 ~~-aDl~i~~S-------------Gt~tl--Ea~~~G~P~Vv~~~~~~~ 217 (261)
.. +|.++.-+ ||..+ =|-.+++|++++.....+
T Consensus 174 ~~~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~~~~~K~ 222 (282)
T PF01008_consen 174 PRDVDKVLIGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVLAESYKF 222 (282)
T ss_dssp HCTESEEEEE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE--GGGB
T ss_pred HHhCCeeEEeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEEcccccc
Confidence 99 99988744 77544 566789999988554433
No 154
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=90.57 E-value=5.7 Score=35.82 Aligned_cols=102 Identities=13% Similarity=0.164 Sum_probs=58.2
Q ss_pred CCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchH-HHHHHHHhcCCCCEEEecCCCcchHH
Q 024872 103 VPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVE-NYITGLIQKWPVPSILVPGGSSNLKY 181 (261)
Q Consensus 103 l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~-~~l~~~~~~~~~~v~v~~g~~~~~~~ 181 (261)
+.++ -+||..+-|+- +.+ .+.+| .++..++++++.=+. +..+ ......+.+.++++.++++ ..+.
T Consensus 118 i~~g-~~ILT~~~S~t--v~~---~l~~A----~~~~k~~~V~v~Esr-P~~~G~~~a~~L~~~GI~vtlI~D---sav~ 183 (310)
T PRK08535 118 IRDG-DVIMTHCNSSA--ALS---VIKTA----HEQGKDIEVIATETR-PRNQGHITAKELAEYGIPVTLIVD---SAVR 183 (310)
T ss_pred cCCC-CEEEEeCCcHH--HHH---HHHHH----HHCCCeEEEEEecCC-chhhHHHHHHHHHHCCCCEEEEeh---hHHH
Confidence 4444 47877766643 221 23332 223345665544332 2211 1122334456788888764 3688
Q ss_pred HHHHHcceeEEec-------------hHHHH--HHHHcCCCEEEEEcCChHH
Q 024872 182 DAFSASRVALCTS-------------GTVAV--ELQLARLPCVVAYRAHFLT 218 (261)
Q Consensus 182 ~~~~~aDl~i~~S-------------Gt~tl--Ea~~~G~P~Vv~~~~~~~~ 218 (261)
.+|...|.++.-+ ||..+ =|-.+++|++++.....++
T Consensus 184 ~~m~~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~~vPv~V~a~~~K~~ 235 (310)
T PRK08535 184 YFMKDVDKVVVGADAITANGAVINKIGTSQIALAAHEARVPFMVAAETYKFS 235 (310)
T ss_pred HHHHhCCEEEECccEEecCCCEEeHHhHHHHHHHHHHhCCCEEEecccceec
Confidence 8999999998744 66544 4567799999875554444
No 155
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=90.46 E-value=5.7 Score=37.83 Aligned_cols=102 Identities=16% Similarity=0.116 Sum_probs=59.9
Q ss_pred CCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcch--HHHHHHHHhcCCCCEEEecCCCcchHHHH
Q 024872 106 GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHV--ENYITGLIQKWPVPSILVPGGSSNLKYDA 183 (261)
Q Consensus 106 ~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~--~~~l~~~~~~~~~~v~v~~g~~~~~~~~~ 183 (261)
|..+||.++-|-- ++. .+++| .++ .++++++++=.. +.. +..++.+ .+.|+++.+.. .+-...+
T Consensus 359 dgdviltyg~s~v--V~~---ill~A-~~~---~k~frVvVVDSR-P~~EG~~~lr~L-v~~GinctYv~---I~a~syi 424 (556)
T KOG1467|consen 359 DGDVLLTYGSSSV--VNM---ILLEA-KEL---GKKFRVVVVDSR-PNLEGRKLLRRL-VDRGINCTYVL---INAASYI 424 (556)
T ss_pred cCCEEEEecchHH--HHH---HHHHH-HHh---CcceEEEEEeCC-CCcchHHHHHHH-HHcCCCeEEEE---ehhHHHH
Confidence 5567777754432 333 45553 333 368998887654 332 2334433 34466665442 2345556
Q ss_pred HHHcceeEE-------------echHHHH--HHHHcCCCEEEEEcCChHHHHH
Q 024872 184 FSASRVALC-------------TSGTVAV--ELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 184 ~~~aDl~i~-------------~SGt~tl--Ea~~~G~P~Vv~~~~~~~~~~i 221 (261)
|..++-++. +.||+.+ =|=+..+|+|++-..-.|.+.+
T Consensus 425 m~evtkvfLGahailsNG~vysR~GTa~valvAna~nVPVlVCCE~yKF~eRv 477 (556)
T KOG1467|consen 425 MLEVTKVFLGAHAILSNGAVYSRVGTACVALVANAFNVPVLVCCEAYKFHERV 477 (556)
T ss_pred HHhcceeeechhhhhcCcchhhhcchHHHHHHhcccCCCEEEEechhhhhhhh
Confidence 666665554 3477544 5667899999998877777655
No 156
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=89.98 E-value=2 Score=41.06 Aligned_cols=120 Identities=21% Similarity=0.171 Sum_probs=69.1
Q ss_pred HHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCe----EEEEEeCCCc----ch---HHHHHHHHhc
Q 024872 96 DFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPEL----ITVIHVAPNR----HV---ENYITGLIQK 164 (261)
Q Consensus 96 ~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~----~~vi~~~~~~----~~---~~~l~~~~~~ 164 (261)
+++++++ ++++| ++-.|....|+ ++.=++|++++.+++|++ .++-++.++. ++ +..+++.+.+
T Consensus 247 ~lr~~~~---~~~li--lgVDRLDytKG-i~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~ 320 (474)
T PRK10117 247 QLKAELK---NVQNI--FSVERLDYSKG-LPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGR 320 (474)
T ss_pred HHHHHcC---CCeEE--EEecccccccC-HHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHH
Confidence 3444443 34444 45578876665 566778999999888863 4554444331 12 2223333321
Q ss_pred ----CCC----CEEEecC-CCcchHHHHHHHcceeEEec---hH--HHHHHHHcCCC---EE-EEEcCChHHHHH
Q 024872 165 ----WPV----PSILVPG-GSSNLKYDAFSASRVALCTS---GT--VAVELQLARLP---CV-VAYRAHFLTEWF 221 (261)
Q Consensus 165 ----~~~----~v~v~~g-~~~~~~~~~~~~aDl~i~~S---Gt--~tlEa~~~G~P---~V-v~~~~~~~~~~i 221 (261)
++. +++++.. ...++...+|++||+++..| |. ++-|-.+|..| .| |..+..+-...+
T Consensus 321 INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~~~~GvLILSefAGaA~~L 395 (474)
T PRK10117 321 INGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANEL 395 (474)
T ss_pred HHhccCCCCceeEEEecCCCCHHHHHHHHHhccEEEecccccccccccchheeeecCCCCccEEEecccchHHHh
Confidence 221 3554432 22567889999999999999 65 34499999763 33 446655443333
No 157
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=89.91 E-value=0.64 Score=45.44 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=34.9
Q ss_pred chHHHHHHHcceeEEec-----hHHHHHHHHcCCCEEEEEcCChHHHHHHH
Q 024872 178 NLKYDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHFLTEWFIR 223 (261)
Q Consensus 178 ~~~~~~~~~aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~~~~~ia~ 223 (261)
-+.+++++.||+.|-+| |-+.+|++++|+|+|. .+.++|.-|+-+
T Consensus 461 l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsIT-TnLsGFG~~~~~ 510 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSIT-TNLSGFGCWMQE 510 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEE-ETTBHHHHHHHT
T ss_pred CCHHHHhccCceeeeccccccccCChHHHhhcCCceee-ccchhHHHHHHH
Confidence 36799999999999999 9999999999999985 789999988754
No 158
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=89.25 E-value=11 Score=33.54 Aligned_cols=99 Identities=12% Similarity=0.024 Sum_probs=58.3
Q ss_pred CcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchH-HHHHHHHhcCCCCEEEecCCCcchHHHHHH
Q 024872 107 ATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVE-NYITGLIQKWPVPSILVPGGSSNLKYDAFS 185 (261)
Q Consensus 107 ~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~-~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~ 185 (261)
.-+||..+-|+- .+..+....++..++++++.-.. +..+ ..+...+.+.++++.++++ .....+|+
T Consensus 110 g~~ILTh~~S~t---------v~~~l~~A~~~gk~~~V~v~Esr-P~~qG~~la~eL~~~GI~vtlI~D---sa~~~~m~ 176 (275)
T PRK08335 110 GDVIITHSFSSA---------VLEILKTAKRKGKRFKVILTESA-PDYEGLALANELEFLGIEFEVITD---AQLGLFAK 176 (275)
T ss_pred CCEEEEECCcHH---------HHHHHHHHHHcCCceEEEEecCC-CchhHHHHHHHHHHCCCCEEEEec---cHHHHHHH
Confidence 346777765532 22233333333445666544322 2221 1233345556888888764 35778899
Q ss_pred HcceeEEec-------------hHHHH--HHHHcCCCEEEEEcCChHH
Q 024872 186 ASRVALCTS-------------GTVAV--ELQLARLPCVVAYRAHFLT 218 (261)
Q Consensus 186 ~aDl~i~~S-------------Gt~tl--Ea~~~G~P~Vv~~~~~~~~ 218 (261)
..|.+|.-+ ||..+ =|-..|+|++++-....++
T Consensus 177 ~vd~VivGAD~I~~nG~v~NKiGT~~lA~~Ak~~~vPfyV~a~~~k~~ 224 (275)
T PRK08335 177 EATLALVGADNVTRDGYVVNKAGTYLLALACHDNGVPFYVAAETFKFH 224 (275)
T ss_pred hCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEECccceec
Confidence 999998743 67554 5677899999876655554
No 159
>PLN02554 UDP-glycosyltransferase family protein
Probab=89.10 E-value=1.6 Score=41.81 Aligned_cols=32 Identities=13% Similarity=0.042 Sum_probs=26.0
Q ss_pred HHHHH--HHcceeEEechHHHH-HHHHcCCCEEEE
Q 024872 180 KYDAF--SASRVALCTSGTVAV-ELQLARLPCVVA 211 (261)
Q Consensus 180 ~~~~~--~~aDl~i~~SGt~tl-Ea~~~G~P~Vv~ 211 (261)
-.+++ .+.+++|+=.|-.+. |++.+|+|||+.
T Consensus 352 Q~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~ 386 (481)
T PLN02554 352 QVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAW 386 (481)
T ss_pred HHHHhCCcccCcccccCccchHHHHHHcCCCEEec
Confidence 45688 677779999997555 999999999964
No 160
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=88.68 E-value=0.86 Score=36.13 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=44.8
Q ss_pred cchHHHHHHHcceeEEechHHHH-HHHHcCCCEEEEEcCChHHH-------HHHHhcccCCccch
Q 024872 177 SNLKYDAFSASRVALCTSGTVAV-ELQLARLPCVVAYRAHFLTE-------WFIRYKAKIPYISL 233 (261)
Q Consensus 177 ~~~~~~~~~~aDl~i~~SGt~tl-Ea~~~G~P~Vv~~~~~~~~~-------~ia~~~~~~~~~~l 233 (261)
.+.+.++.+.|.++|+-+|+.++ -+.-+++|.|++.+.+...+ .+|..|.-.+|.--
T Consensus 56 ~~kiQsli~darIVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~~~vv~ 120 (161)
T COG5017 56 EEKIQSLIHDARIVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEINYVVA 120 (161)
T ss_pred HHHHHHHhhcceEEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhcCceEE
Confidence 45799999999999999999887 99999999999988874433 24666665555443
No 161
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=87.82 E-value=4.1 Score=38.83 Aligned_cols=123 Identities=10% Similarity=0.060 Sum_probs=62.1
Q ss_pred HHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcc-------h-H---HHHHHHHhc
Q 024872 96 DFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRH-------V-E---NYITGLIQK 164 (261)
Q Consensus 96 ~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~-------~-~---~~l~~~~~~ 164 (261)
+..+-+.-.+++.||.+.-||... +. ...+.+.+..|... + .+|+|+..+... . . ...+.+.++
T Consensus 250 ~~~~wLd~~~~~sVvyvsfGS~~~-l~--~~q~~ela~gL~~s-~-~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~ 324 (455)
T PLN02152 250 SYTLWLDSKTESSVIYVSFGTMVE-LS--KKQIEELARALIEG-K-RPFLWVITDKLNREAKIEGEEETEIEKIAGFRHE 324 (455)
T ss_pred HHHHHhhCCCCCceEEEEeccccc-CC--HHHHHHHHHHHHHc-C-CCeEEEEecCcccccccccccccccccchhHHHh
Confidence 344444444556788887788653 11 11233333344332 3 378887753100 0 0 001122111
Q ss_pred CCCCEEEecCCCcchHHHHHHHcc--eeEEechHHHH-HHHHcCCCEEEEEcCChHHHHHHHhccc
Q 024872 165 WPVPSILVPGGSSNLKYDAFSASR--VALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFIRYKAK 227 (261)
Q Consensus 165 ~~~~v~v~~g~~~~~~~~~~~~aD--l~i~~SGt~tl-Ea~~~G~P~Vv~~~~~~~~~~ia~~~~~ 227 (261)
.+.+..+. +.. .-.++++..+ ++|+-.|-.+. |++.+|+|+|.. +...--...+++++.
T Consensus 325 ~~~~g~v~-~W~--PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~-P~~~DQ~~na~~~~~ 386 (455)
T PLN02152 325 LEEVGMIV-SWC--SQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAF-PMWSDQPANAKLLEE 386 (455)
T ss_pred ccCCeEEE-eeC--CHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEec-cccccchHHHHHHHH
Confidence 22233333 221 2356888888 58888887544 999999999964 332222223555543
No 162
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=87.01 E-value=16 Score=32.91 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=38.4
Q ss_pred HHHHhcCCCCEEEecCCCcchHHHHHHHcceeEE-------------echHHHH--HHHHcCCCEEEEEcC
Q 024872 159 TGLIQKWPVPSILVPGGSSNLKYDAFSASRVALC-------------TSGTVAV--ELQLARLPCVVAYRA 214 (261)
Q Consensus 159 ~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~-------------~SGt~tl--Ea~~~G~P~Vv~~~~ 214 (261)
-+.++++++++.++.+ ..+..+|+.+|.++. ++||..| =|--+|+|++++...
T Consensus 163 ak~L~~~gI~~~~I~D---sa~~~~~~~vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v~aes 230 (301)
T COG1184 163 AKELRQSGIPVTVIVD---SAVGAFMSRVDKVLVGADAILANGALVNKIGTSPLALAARELRVPFYVVAES 230 (301)
T ss_pred HHHHHHcCCceEEEec---hHHHHHHHhCCEEEECccceecCCcEEeccchHHHHHHHHHhCCCEEEEeee
Confidence 3456678888777653 368889999998876 4488776 455689999987444
No 163
>PLN00414 glycosyltransferase family protein
Probab=86.82 E-value=4.7 Score=38.27 Aligned_cols=101 Identities=13% Similarity=0.009 Sum_probs=57.5
Q ss_pred cCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCc---c----hHHHHHHHHhcCCCCEEEec
Q 024872 101 YSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNR---H----VENYITGLIQKWPVPSILVP 173 (261)
Q Consensus 101 l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~---~----~~~~l~~~~~~~~~~v~v~~ 173 (261)
|.-.+.+.||.+.-||...- .-+.+.+.+..|.. .+..|+|+.-+.. + +-+-+++..++-+ .++.
T Consensus 246 LD~q~~~sVvyvsfGS~~~~---~~~q~~e~a~gL~~--s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g---~vv~ 317 (446)
T PLN00414 246 LNGFEPGSVVFCAFGTQFFF---EKDQFQEFCLGMEL--TGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRG---IVWE 317 (446)
T ss_pred HhcCCCCceEEEeecccccC---CHHHHHHHHHHHHH--cCCCeEEEEecCCCcccchhhCChhHHHHhcCCC---eEEe
Confidence 33345667888877887531 12346666666654 3456666553210 1 1111223333333 2222
Q ss_pred CCCcchHHHHHHHc--ceeEEechHHHH-HHHHcCCCEEEE
Q 024872 174 GGSSNLKYDAFSAS--RVALCTSGTVAV-ELQLARLPCVVA 211 (261)
Q Consensus 174 g~~~~~~~~~~~~a--Dl~i~~SGt~tl-Ea~~~G~P~Vv~ 211 (261)
+.. .-.++++.+ +.+|+=.|-.+. |++.+|+|+|..
T Consensus 318 ~w~--PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~ 356 (446)
T PLN00414 318 GWV--EQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFI 356 (446)
T ss_pred ccC--CHHHHhcCCccceEEecCchhHHHHHHHcCCCEEec
Confidence 321 345788766 779999997555 999999999964
No 164
>PLN00164 glucosyltransferase; Provisional
Probab=86.52 E-value=3.4 Score=39.58 Aligned_cols=32 Identities=9% Similarity=0.044 Sum_probs=25.8
Q ss_pred HHHHHHHcc--eeEEechHHH-HHHHHcCCCEEEE
Q 024872 180 KYDAFSASR--VALCTSGTVA-VELQLARLPCVVA 211 (261)
Q Consensus 180 ~~~~~~~aD--l~i~~SGt~t-lEa~~~G~P~Vv~ 211 (261)
-.++++.++ .+|+=.|-.+ +|++.+|+|+|..
T Consensus 349 Q~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~ 383 (480)
T PLN00164 349 QKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPW 383 (480)
T ss_pred HHHHhcCcccCeEEeecccchHHHHHHcCCCEEeC
Confidence 467888877 6888888754 4999999999964
No 165
>PLN03004 UDP-glycosyltransferase
Probab=86.38 E-value=3.2 Score=39.49 Aligned_cols=98 Identities=12% Similarity=-0.006 Sum_probs=55.1
Q ss_pred CCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcc-------hHH----HHHHHHhcCCCCEEEe
Q 024872 104 PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRH-------VEN----YITGLIQKWPVPSILV 172 (261)
Q Consensus 104 ~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~-------~~~----~l~~~~~~~~~~v~v~ 172 (261)
.+++.+|.+.-||... +. .+.+.+.+..|.. .+..|+|+..+... ..+ -+++..++- .+.+.
T Consensus 267 ~~~~sVvyvsfGS~~~-~~--~~q~~ela~gL~~--s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~--g~~v~ 339 (451)
T PLN03004 267 QPEKSVVFLCFGSLGL-FS--KEQVIEIAVGLEK--SGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDK--GMVVK 339 (451)
T ss_pred CCCCceEEEEeccccc-CC--HHHHHHHHHHHHH--CCCCEEEEEcCCccccccccchhhhCChHHHHhccCC--cEEEE
Confidence 4455688887788743 11 1223333334433 23479998863210 111 112222222 23322
Q ss_pred cCCCcchHHHHHHHcce--eEEechHH-HHHHHHcCCCEEEE
Q 024872 173 PGGSSNLKYDAFSASRV--ALCTSGTV-AVELQLARLPCVVA 211 (261)
Q Consensus 173 ~g~~~~~~~~~~~~aDl--~i~~SGt~-tlEa~~~G~P~Vv~ 211 (261)
+.. .-.++++.+++ +|+=.|.. |+|++.+|+|+|..
T Consensus 340 -~W~--PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~ 378 (451)
T PLN03004 340 -SWA--PQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAW 378 (451)
T ss_pred -eeC--CHHHHhCCCccceEeccCcchHHHHHHHcCCCEEec
Confidence 211 34679999998 88888875 45999999999964
No 166
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=85.59 E-value=12 Score=31.00 Aligned_cols=101 Identities=14% Similarity=0.107 Sum_probs=45.0
Q ss_pred cEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHc
Q 024872 108 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSAS 187 (261)
Q Consensus 108 ~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~a 187 (261)
+.|-+-..|-| |++- +...++++.+++|+.++++.+... .-.+..++...+ ...+.+++-.....+...++.-
T Consensus 22 ~~iWiHa~SvG-E~~a----~~~Li~~l~~~~p~~~illT~~T~-tg~~~~~~~~~~-~v~~~~~P~D~~~~~~rfl~~~ 94 (186)
T PF04413_consen 22 PLIWIHAASVG-EVNA----ARPLIKRLRKQRPDLRILLTTTTP-TGREMARKLLPD-RVDVQYLPLDFPWAVRRFLDHW 94 (186)
T ss_dssp T-EEEE-SSHH-HHHH----HHHHHHHHTT---TS-EEEEES-C-CHHHHHHGG-GG-G-SEEE---SSHHHHHHHHHHH
T ss_pred CcEEEEECCHH-HHHH----HHHHHHHHHHhCCCCeEEEEecCC-chHHHHHHhCCC-CeEEEEeCccCHHHHHHHHHHh
Confidence 78888887866 4543 555667888888999999888743 222333433332 2234444422111233444433
Q ss_pred --ceeEEechH---HHH-HHHHcCCCEEEEE-cCC
Q 024872 188 --RVALCTSGT---VAV-ELQLARLPCVVAY-RAH 215 (261)
Q Consensus 188 --Dl~i~~SGt---~tl-Ea~~~G~P~Vv~~-~~~ 215 (261)
|++|..-+- .-+ ++-..|+|++++. +.+
T Consensus 95 ~P~~~i~~EtElWPnll~~a~~~~ip~~LvNarls 129 (186)
T PF04413_consen 95 RPDLLIWVETELWPNLLREAKRRGIPVVLVNARLS 129 (186)
T ss_dssp --SEEEEES----HHHHHH-----S-EEEEEE---
T ss_pred CCCEEEEEccccCHHHHHHHhhcCCCEEEEeeeec
Confidence 777765542 444 8999999999874 444
No 167
>PLN02207 UDP-glycosyltransferase
Probab=85.42 E-value=3.5 Score=39.47 Aligned_cols=107 Identities=15% Similarity=0.116 Sum_probs=55.3
Q ss_pred HHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcc-hHHHH-HHHHhcCCCCEEEecC
Q 024872 97 FKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRH-VENYI-TGLIQKWPVPSILVPG 174 (261)
Q Consensus 97 ~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~-~~~~l-~~~~~~~~~~v~v~~g 174 (261)
..+-+.-.+...+|.+.-||...-- .+.+.+.+..|.. .+.+|+|+..+... ..+.+ +...+....+..+. +
T Consensus 265 ~~~WLd~~~~~sVVyvSfGS~~~~~---~~q~~ela~~l~~--~~~~flW~~r~~~~~~~~~lp~~f~er~~~~g~i~-~ 338 (468)
T PLN02207 265 LMKWLDDQPEASVVFLCFGSMGRLR---GPLVKEIAHGLEL--CQYRFLWSLRTEEVTNDDLLPEGFLDRVSGRGMIC-G 338 (468)
T ss_pred HHHHHhcCCCCcEEEEEeccCcCCC---HHHHHHHHHHHHH--CCCcEEEEEeCCCccccccCCHHHHhhcCCCeEEE-E
Confidence 3333333445678888888865311 1233333444433 24578888763111 00100 11111111133332 2
Q ss_pred CCcchHHHHHHHcce--eEEechH-HHHHHHHcCCCEEEE
Q 024872 175 GSSNLKYDAFSASRV--ALCTSGT-VAVELQLARLPCVVA 211 (261)
Q Consensus 175 ~~~~~~~~~~~~aDl--~i~~SGt-~tlEa~~~G~P~Vv~ 211 (261)
.. .-.++++...+ +||=.|- +|+|++.+|+|||..
T Consensus 339 W~--PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~ 376 (468)
T PLN02207 339 WS--PQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTW 376 (468)
T ss_pred eC--CHHHHhcccccceeeecCccccHHHHHHcCCCEEec
Confidence 11 23467777555 9998886 455999999999964
No 168
>PLN02173 UDP-glucosyl transferase family protein
Probab=85.30 E-value=3.1 Score=39.53 Aligned_cols=112 Identities=11% Similarity=0.054 Sum_probs=59.6
Q ss_pred CCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcc--hHHHHHHHHhcCCCCEEEecCCCcchHH
Q 024872 104 PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRH--VENYITGLIQKWPVPSILVPGGSSNLKY 181 (261)
Q Consensus 104 ~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~--~~~~l~~~~~~~~~~v~v~~g~~~~~~~ 181 (261)
.+++.+|.+.-||...-- .+.+.+.+..| .+..|+|+...... +-+-+.+..+ +.++.+. +.. .-.
T Consensus 261 ~~~~svvyvsfGS~~~~~---~~~~~ela~gL----s~~~flWvvr~~~~~~lp~~~~~~~~--~~~~~i~-~W~--PQ~ 328 (449)
T PLN02173 261 RPQGSVVYIAFGSMAKLS---SEQMEEIASAI----SNFSYLWVVRASEESKLPPGFLETVD--KDKSLVL-KWS--PQL 328 (449)
T ss_pred CCCCceEEEEecccccCC---HHHHHHHHHHh----cCCCEEEEEeccchhcccchHHHhhc--CCceEEe-CCC--CHH
Confidence 445668888778865311 12344444444 23457777743111 1011111121 2234444 321 345
Q ss_pred HHHHHcc--eeEEechHH-HHHHHHcCCCEEEEEcCChHHHHHHHhcccC
Q 024872 182 DAFSASR--VALCTSGTV-AVELQLARLPCVVAYRAHFLTEWFIRYKAKI 228 (261)
Q Consensus 182 ~~~~~aD--l~i~~SGt~-tlEa~~~G~P~Vv~~~~~~~~~~ia~~~~~~ 228 (261)
++++..+ ++|+=.|-. ++|++.+|+|+|.. +...--+..+++++..
T Consensus 329 ~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~-P~~~DQ~~Na~~v~~~ 377 (449)
T PLN02173 329 QVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAM-PQWTDQPMNAKYIQDV 377 (449)
T ss_pred HHhCCCccceEEecCccchHHHHHHcCCCEEec-CchhcchHHHHHHHHH
Confidence 6888877 888888865 55999999999964 3322222335656543
No 169
>PLN02534 UDP-glycosyltransferase
Probab=85.29 E-value=6 Score=38.07 Aligned_cols=119 Identities=13% Similarity=-0.009 Sum_probs=63.4
Q ss_pred HHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCc---chHHH-----HHHHHhcCCCC
Q 024872 97 FKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNR---HVENY-----ITGLIQKWPVP 168 (261)
Q Consensus 97 ~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~---~~~~~-----l~~~~~~~~~~ 168 (261)
..+-+.-.+++.||.+.-||...-. -+.+.+.+..|... +.+|+|+..+.. +..+. +.+..++- .
T Consensus 273 cl~wLd~~~~~sVvyvsfGS~~~~~---~~q~~e~a~gl~~~--~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~--g 345 (491)
T PLN02534 273 CLEWLDSMKPRSVIYACLGSLCRLV---PSQLIELGLGLEAS--KKPFIWVIKTGEKHSELEEWLVKENFEERIKGR--G 345 (491)
T ss_pred HHHHHhcCCCCceEEEEecccccCC---HHHHHHHHHHHHhC--CCCEEEEEecCccccchhhhcCchhhHHhhccC--C
Confidence 3333444455678888878876321 12355555444432 347888886311 10110 11111211 2
Q ss_pred EEEecCCCcchHHHHHHHcce--eEEechHHHH-HHHHcCCCEEEEEcCChHHHHHHHhcc
Q 024872 169 SILVPGGSSNLKYDAFSASRV--ALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFIRYKA 226 (261)
Q Consensus 169 v~v~~g~~~~~~~~~~~~aDl--~i~~SGt~tl-Ea~~~G~P~Vv~~~~~~~~~~ia~~~~ 226 (261)
+.+ .+.. .-.++++..++ +|+=.|..+. |+..+|+|+|.. +...--+.-+++++
T Consensus 346 ~~v-~~w~--pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~-P~~~dq~~na~~~~ 402 (491)
T PLN02534 346 LLI-KGWA--PQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITW-PLFAEQFLNEKLIV 402 (491)
T ss_pred eec-cCCC--CHHHHhcCCccceEEecCccHHHHHHHHcCCCEEec-cccccHHHHHHHHH
Confidence 222 2221 23568888887 8888887555 999999999964 44322222355554
No 170
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=85.20 E-value=11 Score=34.83 Aligned_cols=111 Identities=15% Similarity=0.128 Sum_probs=70.2
Q ss_pred cHHHHhhcCCC---CCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHh-------
Q 024872 94 SEDFKNKYSVP---SGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQ------- 163 (261)
Q Consensus 94 ~~~~r~~l~l~---~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~------- 163 (261)
+..+.+++|++ ++..+|.++ |.... .++.+++++. +....++++++.|... ..++....
T Consensus 168 ~~~~~~~lg~~~~~~~~~~vslF--~Ye~~---~l~~ll~~~~---~~~~pv~llvp~g~~~---~~~~~~~~~~~~~~g 236 (374)
T PF10093_consen 168 RAAFLRRLGLPEPEPGALRVSLF--CYENA---ALASLLDAWA---ASPKPVHLLVPEGRAL---NSLAAWLGDALLQAG 236 (374)
T ss_pred HHHHHHHcCCCCCCCCCeEEEEE--eCCch---HHHHHHHHHh---cCCCCeEEEecCCccH---HHHHHHhccccccCc
Confidence 45677789986 566777777 44321 1334555444 3334577777777532 23333322
Q ss_pred ---cC-CCCEEEecCCCcchHHHHHHHcceeEEechHHHHHHHHcCCCEE-EEEcCC
Q 024872 164 ---KW-PVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCV-VAYRAH 215 (261)
Q Consensus 164 ---~~-~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tlEa~~~G~P~V-v~~~~~ 215 (261)
.. .+.+++++...+++...++.+||+-+.+-==+-+=|.-.|+|.| =+|+-.
T Consensus 237 ~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~NfVRGEDSfVRAqwAgkPFvWhIYpQ~ 293 (374)
T PF10093_consen 237 DSWQRGNLTLHVLPFVPQDDYDRLLWACDFNFVRGEDSFVRAQWAGKPFVWHIYPQE 293 (374)
T ss_pred cccccCCeEEEECCCCCHHHHHHHHHhCccceEecchHHHHHHHhCCCceEecCcCc
Confidence 01 12345554333678999999999999997667679999999999 457653
No 171
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=85.20 E-value=4.6 Score=38.41 Aligned_cols=100 Identities=13% Similarity=0.030 Sum_probs=55.4
Q ss_pred CCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCc----chH-HHHHHHHhcCCCCEEEecCCCcc
Q 024872 104 PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNR----HVE-NYITGLIQKWPVPSILVPGGSSN 178 (261)
Q Consensus 104 ~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~----~~~-~~l~~~~~~~~~~v~v~~g~~~~ 178 (261)
.+.+.||.+.-||...- ....+.+.+..|.. .+.+|+|+..+.. +.. ..-..+.++...+..+. +..
T Consensus 261 ~~~~sVvyvsfGS~~~~---~~~q~~ela~gLe~--s~~~FlWv~r~~~~~~~~~~~~lp~~f~er~~~~g~v~-~w~-- 332 (451)
T PLN02410 261 QKKNSVIFVSLGSLALM---EINEVMETASGLDS--SNQQFLWVIRPGSVRGSEWIESLPKEFSKIISGRGYIV-KWA-- 332 (451)
T ss_pred CCCCcEEEEEccccccC---CHHHHHHHHHHHHh--cCCCeEEEEccCcccccchhhcCChhHHHhccCCeEEE-ccC--
Confidence 44567888887887531 12245555555543 2347888875321 100 00111111121233444 221
Q ss_pred hHHHHHHHcce--eEEechHHHH-HHHHcCCCEEEE
Q 024872 179 LKYDAFSASRV--ALCTSGTVAV-ELQLARLPCVVA 211 (261)
Q Consensus 179 ~~~~~~~~aDl--~i~~SGt~tl-Ea~~~G~P~Vv~ 211 (261)
.-.++++..++ +|+=.|-.+. |++.+|+|+|..
T Consensus 333 PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~ 368 (451)
T PLN02410 333 PQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICK 368 (451)
T ss_pred CHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEec
Confidence 34568888555 9999997655 999999999964
No 172
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=85.02 E-value=0.77 Score=37.31 Aligned_cols=47 Identities=21% Similarity=0.288 Sum_probs=37.2
Q ss_pred CCCeE---EEEe-CCccccccCCcchHHHHHhchhhheecCcchHHHHHHcCCC---eEEEcCCC
Q 024872 13 NGPAH---FHYV-APSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLA---ATFVGHPV 70 (261)
Q Consensus 13 ~ip~~---~~yv-~p~~waw~~g~~r~~~l~~~~d~v~~~~p~e~~~~~~~g~~---~~~vG~P~ 70 (261)
++|++ ..|. .+..|.+. .+|..++.+++..+.+.+.|++ +.++|+|+
T Consensus 116 ~~p~~tvvTD~~~~H~~W~~~-----------~~D~y~Vase~~~~~l~~~Gi~~~~I~vtGiPV 169 (169)
T PF06925_consen 116 NIPVVTVVTDFDTVHPFWIHP-----------GVDRYFVASEEVKEELIERGIPPERIHVTGIPV 169 (169)
T ss_pred CCcEEEEEcCCCCCCcCeecC-----------CCCEEEECCHHHHHHHHHcCCChhHEEEeCccC
Confidence 47763 3553 36778774 5999999999999999889986 78999996
No 173
>PLN02562 UDP-glycosyltransferase
Probab=84.61 E-value=4.8 Score=38.21 Aligned_cols=95 Identities=13% Similarity=0.052 Sum_probs=50.4
Q ss_pred CCcEEEEEcCCcHHHH-HhhHHHHHHHHHHHhhhCCCeEEEEEeCCCc--chHHHHHHHHhcCCCCEEEecCCCcchHHH
Q 024872 106 GATVISLLPGSRLQEV-ARMLPIFAKTVELLKDSFPELITVIHVAPNR--HVENYITGLIQKWPVPSILVPGGSSNLKYD 182 (261)
Q Consensus 106 ~~~vIlll~GSR~~ei-~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~--~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~ 182 (261)
...+|.+.-||..... .+.+..+..+++.. +.+|+|+..... .+-+-+.+...+ ++.+. +.. .-.+
T Consensus 272 ~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~-----g~~fiW~~~~~~~~~l~~~~~~~~~~---~~~v~-~w~--PQ~~ 340 (448)
T PLN02562 272 PNSVIYISFGSWVSPIGESNVRTLALALEAS-----GRPFIWVLNPVWREGLPPGYVERVSK---QGKVV-SWA--PQLE 340 (448)
T ss_pred CCceEEEEecccccCCCHHHHHHHHHHHHHC-----CCCEEEEEcCCchhhCCHHHHHHhcc---CEEEE-ecC--CHHH
Confidence 3457877778853111 11122333333332 347888764211 111111222222 34443 221 3467
Q ss_pred HHHHcc--eeEEechHHHH-HHHHcCCCEEEE
Q 024872 183 AFSASR--VALCTSGTVAV-ELQLARLPCVVA 211 (261)
Q Consensus 183 ~~~~aD--l~i~~SGt~tl-Ea~~~G~P~Vv~ 211 (261)
+++..+ ++|+=.|-.+. |++.+|+|+|+.
T Consensus 341 iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~ 372 (448)
T PLN02562 341 VLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCY 372 (448)
T ss_pred HhCCCccceEEecCcchhHHHHHHcCCCEEeC
Confidence 887766 68888887555 999999999964
No 174
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=84.34 E-value=17 Score=34.17 Aligned_cols=113 Identities=16% Similarity=0.193 Sum_probs=67.4
Q ss_pred CcHHHHhhcC-----CCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCC
Q 024872 93 NSEDFKNKYS-----VPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV 167 (261)
Q Consensus 93 ~~~~~r~~l~-----l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~ 167 (261)
.+..+.+++| .++++|.|=+-.-|-| |.+-..| .+++|.+++|++++++.+.-+.. .+..++...+. .
T Consensus 30 y~~r~~eRfg~~~~~~~~~~p~vWiHaaSVG-Ev~a~~p----Lv~~l~~~~P~~~ilvTt~T~Tg-~e~a~~~~~~~-v 102 (419)
T COG1519 30 YRKRLGERFGFYKPPVKPEGPLVWIHAASVG-EVLAALP----LVRALRERFPDLRILVTTMTPTG-AERAAALFGDS-V 102 (419)
T ss_pred HHHHHHHHhcccCCCCCCCCCeEEEEecchh-HHHHHHH----HHHHHHHhCCCCCEEEEecCccH-HHHHHHHcCCC-e
Confidence 3455666777 2346678988888877 4554333 45678888999999888754333 34344433321 2
Q ss_pred CEEEecCCCcchHHHH--HHHcceeEEechH---HHH-HHHHcCCCEEEEE
Q 024872 168 PSILVPGGSSNLKYDA--FSASRVALCTSGT---VAV-ELQLARLPCVVAY 212 (261)
Q Consensus 168 ~v~v~~g~~~~~~~~~--~~~aDl~i~~SGt---~tl-Ea~~~G~P~Vv~~ 212 (261)
.+.+++.....-.... .-.-|++|..=+- .++ |+-..|+|.+++.
T Consensus 103 ~h~YlP~D~~~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvN 153 (419)
T COG1519 103 IHQYLPLDLPIAVRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLVN 153 (419)
T ss_pred EEEecCcCchHHHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEEEe
Confidence 2344442111112222 2356777766553 566 9999999999874
No 175
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=83.96 E-value=19 Score=32.40 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=38.6
Q ss_pred HHhcCCCCEEEecCCCcchHHHHHH--HcceeEEe-------------chHHHH--HHHHcCCCEEEEEcCChHH
Q 024872 161 LIQKWPVPSILVPGGSSNLKYDAFS--ASRVALCT-------------SGTVAV--ELQLARLPCVVAYRAHFLT 218 (261)
Q Consensus 161 ~~~~~~~~v~v~~g~~~~~~~~~~~--~aDl~i~~-------------SGt~tl--Ea~~~G~P~Vv~~~~~~~~ 218 (261)
.+.+.++++.++.+ .-+..+|+ ..|.++.- .||..+ =|-.+|+|++++-....++
T Consensus 173 ~L~~~gI~vtlI~D---sa~~~~m~~~~vd~VlvGAd~v~~nG~v~nk~GT~~lA~~Ak~~~vPv~V~a~s~K~~ 244 (303)
T TIGR00524 173 ELMQDGIDVTLITD---SMAAYFMQKGEIDAVIVGADRIARNGDVANKIGTYQLAVLAKEFRIPFFVAAPLSTFD 244 (303)
T ss_pred HHHHCCCCEEEECh---hHHHHHccccCCCEEEEcccEEecCCCEeEhhhHHHHHHHHHHhCCCEEEeccccccc
Confidence 34556788888764 35788888 88988763 377555 5678999999875554444
No 176
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=83.67 E-value=38 Score=31.58 Aligned_cols=157 Identities=9% Similarity=0.046 Sum_probs=76.0
Q ss_pred HHHhchhhheecCcchHHHHHHcCCCeEEEcCCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCC
Q 024872 37 NLAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGS 116 (261)
Q Consensus 37 ~l~~~~d~v~~~~p~e~~~~~~~g~~~~~vG~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GS 116 (261)
-..+.++.+.+--|.+.++++..|+++..+..|...-.. . .+......+ ....+++++..=.
T Consensus 148 ~~~~~~s~i~vRD~~S~~llk~~gi~a~l~~D~Af~L~~--~---------------~~~~~~~~~-~~~~~~~~i~lr~ 209 (385)
T COG2327 148 YVLGGCSAISVRDPVSYELLKQLGINARLVTDPAFLLPA--S---------------SQNATASDV-EAREKTVAITLRG 209 (385)
T ss_pred HHhcCCcEEEEecHHhHHHHHHcCCCeEeecCcceeccc--c---------------ccccccccc-ccccceEEEEecc
Confidence 344557788888888899999999998887766432100 0 000000001 1123344443211
Q ss_pred -c--HHHHHhhHHHHHHHHHHH-hhhCCCeEEEEE-eCCCcch--HHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcce
Q 024872 117 -R--LQEVARMLPIFAKTVELL-KDSFPELITVIH-VAPNRHV--ENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRV 189 (261)
Q Consensus 117 -R--~~ei~~~~~~ll~a~~~l-~~~~~~~~~vi~-~~~~~~~--~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl 189 (261)
. +..-.......-+++..+ ......+++... .+...++ .+.+.+++.+. .++.+..+..-+++-..++++|+
T Consensus 210 ~~~~~t~~~~~~~~v~~~l~~~~~~~~~~~~i~~~~~~~s~d~~va~~ia~~~~~~-~~i~~~~d~~~~~~~~~l~~~dl 288 (385)
T COG2327 210 LHPDNTAQRSILKYVNEALDLVERQVKALWRITLIDYGASDDLAVADAIAQLVLDS-AEILVSSDEYAEELGGILAACDL 288 (385)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHhhhcceEEEeeeccccchhHHHHHHHhhcCCc-cceEeecchHHHHHHHHhccCce
Confidence 0 000000011223333332 112233333332 2222221 11122222222 24555544311355678999999
Q ss_pred eEEechHHHHHHHHcCCCEEEEE
Q 024872 190 ALCTSGTVAVELQLARLPCVVAY 212 (261)
Q Consensus 190 ~i~~SGt~tlEa~~~G~P~Vv~~ 212 (261)
+|+.==-+++=++++|+|+|.++
T Consensus 289 ~Vg~R~HsaI~al~~g~p~i~i~ 311 (385)
T COG2327 289 IVGMRLHSAIMALAFGVPAIAIA 311 (385)
T ss_pred EEeehhHHHHHHHhcCCCeEEEe
Confidence 99765446667999999999664
No 177
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=83.62 E-value=7.2 Score=29.04 Aligned_cols=56 Identities=13% Similarity=0.142 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechHH----HH--HHHHcCCCEEEEE
Q 024872 156 NYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTV----AV--ELQLARLPCVVAY 212 (261)
Q Consensus 156 ~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~----tl--Ea~~~G~P~Vv~~ 212 (261)
+.+++.+++.+.++.+.... ..+..+.+..+|+++..+=.. .+ .+.-.|+|+.++.
T Consensus 18 ~km~~~a~~~gi~~~i~a~~-~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 18 NALNKGAKERGVPLEAAAGA-YGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred HHHHHHHHHCCCcEEEEEee-HHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeC
Confidence 44555566666655543221 346677777888888777432 23 4556789998764
No 178
>PLN02555 limonoid glucosyltransferase
Probab=82.75 E-value=6.8 Score=37.59 Aligned_cols=99 Identities=11% Similarity=0.062 Sum_probs=52.6
Q ss_pred CCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCc---chH-HHH-HHHHhcCCCCEEEecCCCcch
Q 024872 105 SGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNR---HVE-NYI-TGLIQKWPVPSILVPGGSSNL 179 (261)
Q Consensus 105 ~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~---~~~-~~l-~~~~~~~~~~v~v~~g~~~~~ 179 (261)
+.+.+|.+.-||...-- ...+.+.+..+.. .+.+|+|+..+.. +.. ..+ +...++...+..+. +.. .
T Consensus 275 ~~~sVvyvsfGS~~~~~---~~q~~ela~~l~~--~~~~flW~~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~-~W~--P 346 (480)
T PLN02555 275 PPSSVVYISFGTVVYLK---QEQIDEIAYGVLN--SGVSFLWVMRPPHKDSGVEPHVLPEEFLEKAGDKGKIV-QWC--P 346 (480)
T ss_pred CCCceeEEEeccccCCC---HHHHHHHHHHHHh--cCCeEEEEEecCcccccchhhcCChhhhhhcCCceEEE-ecC--C
Confidence 34457777778854211 1234444444433 3568888864210 000 000 11112111233333 221 2
Q ss_pred HHHHH--HHcceeEEechHHHH-HHHHcCCCEEEE
Q 024872 180 KYDAF--SASRVALCTSGTVAV-ELQLARLPCVVA 211 (261)
Q Consensus 180 ~~~~~--~~aDl~i~~SGt~tl-Ea~~~G~P~Vv~ 211 (261)
-.+++ .+..++|+=.|-.+. |++.+|+|||..
T Consensus 347 Q~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~ 381 (480)
T PLN02555 347 QEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCF 381 (480)
T ss_pred HHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeC
Confidence 35677 668889999997555 999999999964
No 179
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=80.50 E-value=13 Score=25.78 Aligned_cols=61 Identities=15% Similarity=0.225 Sum_probs=34.9
Q ss_pred CCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEE
Q 024872 106 GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSIL 171 (261)
Q Consensus 106 ~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v 171 (261)
+.+.|++. |||.- .+ ...+.+++.++.++.|+..+|+-+.+ ...+...++..++.++.+..
T Consensus 2 ~g~rVli~-GgR~~--~D-~~~i~~~Ld~~~~~~~~~~lvhGga~-~GaD~iA~~wA~~~gv~~~~ 62 (71)
T PF10686_consen 2 EGMRVLIT-GGRDW--TD-HELIWAALDKVHARHPDMVLVHGGAP-KGADRIAARWARERGVPVIR 62 (71)
T ss_pred CCCEEEEE-ECCcc--cc-HHHHHHHHHHHHHhCCCEEEEECCCC-CCHHHHHHHHHHHCCCeeEE
Confidence 34556655 67763 22 24577788888888887654433331 34445455566665654433
No 180
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=79.95 E-value=8.5 Score=31.49 Aligned_cols=71 Identities=11% Similarity=0.067 Sum_probs=38.6
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechH-HHHHHHHcCCCEEEEE
Q 024872 140 PELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGT-VAVELQLARLPCVVAY 212 (261)
Q Consensus 140 ~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt-~tlEa~~~G~P~Vv~~ 212 (261)
.+-+++++|.+.. .-..+...+.+.+..+.+..-. .+++.+.++.||++|+.+|. -.+..-...-..++++
T Consensus 43 ~gk~vlViG~G~~-~G~~~a~~L~~~g~~V~v~~r~-~~~l~~~l~~aDiVIsat~~~~ii~~~~~~~~~viID 114 (168)
T cd01080 43 AGKKVVVVGRSNI-VGKPLAALLLNRNATVTVCHSK-TKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVID 114 (168)
T ss_pred CCCEEEEECCcHH-HHHHHHHHHhhCCCEEEEEECC-chhHHHHHhhCCEEEEcCCCCceecHHHccCCeEEEE
Confidence 4556777666521 1122333444444444444322 35788899999999999986 2222222333456655
No 181
>PLN02764 glycosyltransferase family protein
Probab=79.94 E-value=9.7 Score=36.28 Aligned_cols=101 Identities=15% Similarity=0.066 Sum_probs=55.2
Q ss_pred cCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCc---chHH----HHHHHHhcCCCCEEEec
Q 024872 101 YSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNR---HVEN----YITGLIQKWPVPSILVP 173 (261)
Q Consensus 101 l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~---~~~~----~l~~~~~~~~~~v~v~~ 173 (261)
|.-.+...||.+.-||... +. -+.+.+.+..|.. .+..|+|+.-+.. +... -++...++-|+ ++.
T Consensus 251 LD~q~~~sVvyvsfGS~~~-~~--~~q~~ela~gL~~--s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~---v~~ 322 (453)
T PLN02764 251 LSGYEPDSVVFCALGSQVI-LE--KDQFQELCLGMEL--TGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRGV---VWG 322 (453)
T ss_pred HhCCCCCceEEEeeccccc-CC--HHHHHHHHHHHHh--CCCCeEEEEeCCCCCcchhhhCCcchHhhhccCCc---EEe
Confidence 3344566788887788753 11 2346666666654 3455666554211 1000 11222222221 222
Q ss_pred CCCcchHHHHHHHc--ceeEEechHHHH-HHHHcCCCEEEE
Q 024872 174 GGSSNLKYDAFSAS--RVALCTSGTVAV-ELQLARLPCVVA 211 (261)
Q Consensus 174 g~~~~~~~~~~~~a--Dl~i~~SGt~tl-Ea~~~G~P~Vv~ 211 (261)
+.. .-.++++.. +.+|+=.|..+. |++.+|+|+|..
T Consensus 323 ~W~--PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~ 361 (453)
T PLN02764 323 GWV--QQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLV 361 (453)
T ss_pred CCC--CHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeC
Confidence 221 345688775 559998887555 999999999974
No 182
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=79.35 E-value=10 Score=36.30 Aligned_cols=108 Identities=22% Similarity=0.253 Sum_probs=54.5
Q ss_pred EcCCcHHHHHhhHHHHHHHHHHHhhhCCC----eEEEEEeCCCc-c---h---HHHHHHHHhc----CC----CCEEEec
Q 024872 113 LPGSRLQEVARMLPIFAKTVELLKDSFPE----LITVIHVAPNR-H---V---ENYITGLIQK----WP----VPSILVP 173 (261)
Q Consensus 113 l~GSR~~ei~~~~~~ll~a~~~l~~~~~~----~~~vi~~~~~~-~---~---~~~l~~~~~~----~~----~~v~v~~ 173 (261)
++-.|...+|+ ++.=+.|++++.+++|+ +.++=++.++. + + ++.+++.+.+ ++ .++.++.
T Consensus 280 ~gvDrld~~kG-i~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~ 358 (474)
T PF00982_consen 280 VGVDRLDYTKG-IPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIY 358 (474)
T ss_dssp EEE--B-GGG--HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-
T ss_pred EEeccchhhcC-HHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEe
Confidence 33466665554 56677899999888886 44443333321 1 1 2223332221 11 1466654
Q ss_pred C-CCcchHHHHHHHcceeEEec---hH--HHHHHHHcCCC--EE-EEEcCChHHHHH
Q 024872 174 G-GSSNLKYDAFSASRVALCTS---GT--VAVELQLARLP--CV-VAYRAHFLTEWF 221 (261)
Q Consensus 174 g-~~~~~~~~~~~~aDl~i~~S---Gt--~tlEa~~~G~P--~V-v~~~~~~~~~~i 221 (261)
. ...++...+|+.||+++..| |. ++.|-.++..+ .+ +.....+-...+
T Consensus 359 ~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefaGaa~~L 415 (474)
T PF00982_consen 359 RSLSFEELLALYRAADVALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFAGAAEQL 415 (474)
T ss_dssp S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-TS--EEEEETTBGGGGT-
T ss_pred cCCCHHHHHHHHHhhhhEEecchhhccCCcceEEEEEecCCCCceEeeccCCHHHHc
Confidence 3 22578999999999999999 64 55699999886 44 446655544444
No 183
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=79.04 E-value=23 Score=32.69 Aligned_cols=110 Identities=13% Similarity=0.175 Sum_probs=62.6
Q ss_pred CCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhh-------CCCeEEEEEeCCCcchHHHHHHHHhcCCC-CEEEecCCC
Q 024872 105 SGATVISLLPGSRLQEVARMLPIFAKTVELLKDS-------FPELITVIHVAPNRHVENYITGLIQKWPV-PSILVPGGS 176 (261)
Q Consensus 105 ~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~-------~~~~~~vi~~~~~~~~~~~l~~~~~~~~~-~v~v~~g~~ 176 (261)
++.|.+++..-|-.. ...+..+++|+....++ .|++- .+++|+.+ +++...+.+++.+. ++.+...-.
T Consensus 252 ~~~pallvsSTswTp--DEdf~ILL~AL~~y~~~~~~~~~~lP~ll-ciITGKGP-lkE~Y~~~I~~~~~~~v~~~tpWL 327 (444)
T KOG2941|consen 252 PERPALLVSSTSWTP--DEDFGILLEALVIYEEQLYDKTHNLPSLL-CIITGKGP-LKEKYSQEIHEKNLQHVQVCTPWL 327 (444)
T ss_pred cCCCeEEEecCCCCC--cccHHHHHHHHHhhhhhhhhccCCCCcEE-EEEcCCCc-hhHHHHHHHHHhcccceeeeeccc
Confidence 456777775333322 12356788888744221 34443 34455433 34555555654432 343322111
Q ss_pred -cchHHHHHHHcceeEE----echH----HHHHHHHcCCCEEEEEcCChHHH
Q 024872 177 -SNLKYDAFSASRVALC----TSGT----VAVELQLARLPCVVAYRAHFLTE 219 (261)
Q Consensus 177 -~~~~~~~~~~aDl~i~----~SGt----~tlEa~~~G~P~Vv~~~~~~~~~ 219 (261)
.+|.+.+++.||+.|| .||- -.+....||+|++. .+-..+++
T Consensus 328 ~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA-~~fkcl~E 378 (444)
T KOG2941|consen 328 EAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA-VNFKCLDE 378 (444)
T ss_pred ccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceee-ecchhHHH
Confidence 4588999999999998 4563 35588999999885 44444443
No 184
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=78.86 E-value=28 Score=32.19 Aligned_cols=108 Identities=14% Similarity=0.124 Sum_probs=68.2
Q ss_pred HHHhhcCCC--CCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHh----------
Q 024872 96 DFKNKYSVP--SGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQ---------- 163 (261)
Q Consensus 96 ~~r~~l~l~--~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~---------- 163 (261)
.+.+++|++ ++..+|.++ |.-. ..++.++++. .+....++++++.|... ..+...+.
T Consensus 169 ~~~~~lg~~~~~~~~~vSLF--~Ye~---~al~~ll~~~---~~~~~pv~lLvp~Gr~~---~~v~~~l~~~~~~~g~~~ 237 (371)
T TIGR03837 169 ALLRRLGVGPEPDALLVSLF--CYEN---AALPALLDAL---AQSGSPVHLLVPEGRAL---AAVAAWLGDALLAAGDVH 237 (371)
T ss_pred HHHHHcCCCCCCCCeEEEEE--ecCC---hhHHHHHHHH---HhCCCCeEEEecCCccH---HHHHHHhCccccCCcccc
Confidence 456688985 566777777 4332 1234455544 33334578887777532 22333331
Q ss_pred cCC-CCEEEecCCCcchHHHHHHHcceeEEechHHHHHHHHcCCCEE-EEEcC
Q 024872 164 KWP-VPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCV-VAYRA 214 (261)
Q Consensus 164 ~~~-~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tlEa~~~G~P~V-v~~~~ 214 (261)
+.+ +.+++++...+++...++-+||+=+.+-==+-+=|.-.|+|+| =||+-
T Consensus 238 ~~g~L~~~~LPf~~Q~~yD~LLW~cD~NfVRGEDSFVRAqWAgkPfvWhIYPQ 290 (371)
T TIGR03837 238 RRGALTVAVLPFVPQDDYDRLLWACDLNFVRGEDSFVRAQWAGKPFVWHIYPQ 290 (371)
T ss_pred ccCceEEEEcCCCChhhHHHHHHhChhcEeechhHHHHHHHcCCCceeecccC
Confidence 011 2355554333678999999999999997667779999999999 44764
No 185
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=78.86 E-value=25 Score=32.45 Aligned_cols=118 Identities=16% Similarity=0.132 Sum_probs=64.1
Q ss_pred HHHHhhcCC-CCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhh------CCCeEEEEEeCC-CcchHHH---HHHHHh
Q 024872 95 EDFKNKYSV-PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDS------FPELITVIHVAP-NRHVENY---ITGLIQ 163 (261)
Q Consensus 95 ~~~r~~l~l-~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~------~~~~~~vi~~~~-~~~~~~~---l~~~~~ 163 (261)
+++.+..+- ..+.+.++.++-=|. | ++.+ +++........ -++++++++|+- |++-+++ ++...+
T Consensus 256 e~lks~~~te~~r~~~ll~l~Q~RP-E--KnH~-~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~ 331 (465)
T KOG1387|consen 256 EDLKSKFGTEGERENQLLSLAQFRP-E--KNHK-ILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAE 331 (465)
T ss_pred HHHHHHhcccCCcceEEEEEeecCc-c--cccH-HHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHH
Confidence 344444443 334456666643333 2 3344 55443332222 245788888872 3322232 333344
Q ss_pred cCCC--CEEEecCCCcchHHHHHHHcceeEEec-----hHHHHHHHHcCCCEEEEEcCCh
Q 024872 164 KWPV--PSILVPGGSSNLKYDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAHF 216 (261)
Q Consensus 164 ~~~~--~v~v~~g~~~~~~~~~~~~aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~~ 216 (261)
.+.+ ++.+.-.-..+++..++..|.+.|-.= |.+..|.||+|+=+|+-..+++
T Consensus 332 ~L~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~SgGP 391 (465)
T KOG1387|consen 332 ELKIPKHVQFEKNVPYEKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSGGP 391 (465)
T ss_pred hcCCccceEEEecCCHHHHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCCCC
Confidence 4433 344432222568889999888877544 8888999999997775433333
No 186
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=77.60 E-value=37 Score=32.15 Aligned_cols=130 Identities=18% Similarity=0.223 Sum_probs=66.1
Q ss_pred HHHHhchhhheecCcchH--HHH-HHcCCCeEEEc-----CCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCC---C
Q 024872 36 KNLAAFVDHILCILPNEE--AIC-RLNGLAATFVG-----HPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSV---P 104 (261)
Q Consensus 36 ~~l~~~~d~v~~~~p~e~--~~~-~~~g~~~~~vG-----~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l---~ 104 (261)
..|.+++|.+++-.+... +.+ +..++|+.--| ||- +.+.+ ---+++++|- +
T Consensus 177 rvLs~y~D~IviR~~~~~~~~e~A~~s~vPVINAgdg~~~HPt-QaLaD-----------------l~Ti~E~~g~~g~~ 238 (429)
T PRK11891 177 RVMSGYVDALVIRHPEQGSVAEFARATNLPVINGGDGPGEHPS-QALLD-----------------LYTIQREFSRLGKI 238 (429)
T ss_pred HHHHHhCCEEEEeCCchhHHHHHHHhCCCCEEECCCCCCCCcH-HHHHH-----------------HHHHHHHhCccCCC
Confidence 447889999988877643 223 22345554433 441 01110 0122344431 1
Q ss_pred CCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHH
Q 024872 105 SGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAF 184 (261)
Q Consensus 105 ~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~ 184 (261)
-+...|+++|-.+- ++....++.++.. +.++.+.+++.+.-...+.+.+.+++.+..+.+. ++..+++
T Consensus 239 l~G~kIa~vGD~~~---~rv~~Sl~~~la~----~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~-----~d~~eav 306 (429)
T PRK11891 239 VDGAHIALVGDLKY---GRTVHSLVKLLAL----YRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQT-----DDLAAGL 306 (429)
T ss_pred cCCCEEEEECcCCC---ChHHHHHHHHHHH----hcCCEEEEECCCccccCHHHHHHHHhcCCeEEEE-----cCHHHHh
Confidence 23456887865321 1111223333322 3467777776543222222333344445445443 3788999
Q ss_pred HHcceeEEech
Q 024872 185 SASRVALCTSG 195 (261)
Q Consensus 185 ~~aDl~i~~SG 195 (261)
..||++.+.++
T Consensus 307 ~~ADVVYt~~~ 317 (429)
T PRK11891 307 RGADVVYATRI 317 (429)
T ss_pred CCCCEEEEcCc
Confidence 99999999775
No 187
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=77.22 E-value=2 Score=35.78 Aligned_cols=60 Identities=15% Similarity=0.058 Sum_probs=28.6
Q ss_pred hhhhcCCCCeEE-----EEeCCccccccCCcchHHHHHhchhhheecCcchHHHHHHcCCC---eEEEcCC
Q 024872 7 YSHERLNGPAHF-----HYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLA---ATFVGHP 69 (261)
Q Consensus 7 ~~~~~~~ip~~~-----~yv~p~~waw~~g~~r~~~l~~~~d~v~~~~p~e~~~~~~~g~~---~~~vG~P 69 (261)
.|+++ |||+++ .--+..-|.|.++ -.+.+.+..|.+++-++...+.|++.|.+ +.++||-
T Consensus 113 ~a~~~-~ip~~LvNarls~~s~~~~~~~~~--~~r~~l~~f~~i~aqs~~da~r~~~lG~~~~~v~v~Gnl 180 (186)
T PF04413_consen 113 EAKRR-GIPVVLVNARLSERSFRRYRRFPF--LFRPLLSRFDRILAQSEADAERFRKLGAPPERVHVTGNL 180 (186)
T ss_dssp H------S-EEEEEE--------------H--HHHHHGGG-SEEEESSHHHHHHHHTTT-S--SEEE---G
T ss_pred HHhhc-CCCEEEEeeeeccccchhhhhhHH--HHHHHHHhCCEEEECCHHHHHHHHHcCCCcceEEEeCcc
Confidence 46666 999964 1112334555421 33446667899999999999999999986 7889974
No 188
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=76.16 E-value=1 Score=34.69 Aligned_cols=65 Identities=12% Similarity=0.158 Sum_probs=31.1
Q ss_pred cccchhhhcCCCCeEEEEeCCccccccCC-c----chHH-HHHhchhhheecCcchHHHHHHcCCC---eEEEcC
Q 024872 3 FAARYSHERLNGPAHFHYVAPSFWAWKGG-E----ARLK-NLAAFVDHILCILPNEEAICRLNGLA---ATFVGH 68 (261)
Q Consensus 3 ~~~~~~~~~~~ip~~~~yv~p~~waw~~g-~----~r~~-~l~~~~d~v~~~~p~e~~~~~~~g~~---~~~vG~ 68 (261)
+.+..+++..++|++++. ....+.+..+ . ++.. .+.+.+|.+++.++...+.+.+.|.+ +.++.|
T Consensus 86 ~~~~~~~~~~~~p~v~~~-h~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~l~~~g~~~~ri~vipn 159 (160)
T PF13579_consen 86 LVAALARRRRGIPLVVTV-HGTLFRRGSRWKRRLYRWLERRLLRRADRVIVVSEAMRRYLRRYGVPPDRIHVIPN 159 (160)
T ss_dssp HHHHHHHHHHT--EEEE--SS-T------HHHHHHHHHHHHHHHH-SEEEESSHHHHHHHHHH---GGGEEE---
T ss_pred HHHHHHHHccCCcEEEEE-CCCchhhccchhhHHHHHHHHHHHhcCCEEEECCHHHHHHHHHhCCCCCcEEEeCc
Confidence 345666744499997554 2221111100 0 1222 34667999999999999999878765 555554
No 189
>PLN02670 transferase, transferring glycosyl groups
Probab=73.91 E-value=18 Score=34.74 Aligned_cols=103 Identities=13% Similarity=-0.030 Sum_probs=54.4
Q ss_pred hhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcch-HH-------HHHHHHhcCCCCEE
Q 024872 99 NKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHV-EN-------YITGLIQKWPVPSI 170 (261)
Q Consensus 99 ~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~-~~-------~l~~~~~~~~~~v~ 170 (261)
+-+.-.+.+.||.+.-||... +. ...+.+.+..|... +..|+|+..+..+. .+ -+.+..++-| +
T Consensus 270 ~wLd~~~~~sVvyvsfGS~~~-l~--~~q~~ela~gl~~s--~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG--~- 341 (472)
T PLN02670 270 EWLDKQRVNSVVYVALGTEAS-LR--REEVTELALGLEKS--ETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRG--M- 341 (472)
T ss_pred HHHhcCCCCceEEEEeccccc-CC--HHHHHHHHHHHHHC--CCCEEEEEcCCcccccchhhcCChHHHHhccCCC--e-
Confidence 333334445688887788753 11 12344444444432 34788887531110 00 1111222222 2
Q ss_pred EecCCCcchHHHHHHHcce--eEEechHH-HHHHHHcCCCEEEE
Q 024872 171 LVPGGSSNLKYDAFSASRV--ALCTSGTV-AVELQLARLPCVVA 211 (261)
Q Consensus 171 v~~g~~~~~~~~~~~~aDl--~i~~SGt~-tlEa~~~G~P~Vv~ 211 (261)
++.+.. .-.++++..++ +|+=.|-. |+|++.+|+|||..
T Consensus 342 vv~~W~--PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~ 383 (472)
T PLN02670 342 IHVGWV--PQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILF 383 (472)
T ss_pred EEeCcC--CHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeC
Confidence 222221 23568877666 88888875 55999999999964
No 190
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=72.83 E-value=50 Score=28.96 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=37.3
Q ss_pred HHhcCCCCEEEecCCCcchHHHHHHHcceeEEec-------------hHHHH--HHHHcCCCEEEEEcCChH
Q 024872 161 LIQKWPVPSILVPGGSSNLKYDAFSASRVALCTS-------------GTVAV--ELQLARLPCVVAYRAHFL 217 (261)
Q Consensus 161 ~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~S-------------Gt~tl--Ea~~~G~P~Vv~~~~~~~ 217 (261)
.+.+.++++.++++ ..+..+|..+|.++.-+ ||..+ =|-.+++|++++.....+
T Consensus 129 ~L~~~GI~vtli~D---sa~~~~m~~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv~V~~~s~Kf 197 (253)
T PRK06372 129 LLVKSGIDVVLLTD---ASMCEAVLNVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPFYSLTISMKI 197 (253)
T ss_pred HHHHCCCCEEEEeh---hHHHHHHHhCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEEeecccc
Confidence 34456778887764 35677899899988733 66544 677899999987544333
No 191
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=72.32 E-value=24 Score=25.84 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=20.6
Q ss_pred hHHHHHHHcceeEEechHH----HH--HHHHcCCCEEEEE
Q 024872 179 LKYDAFSASRVALCTSGTV----AV--ELQLARLPCVVAY 212 (261)
Q Consensus 179 ~~~~~~~~aDl~i~~SGt~----tl--Ea~~~G~P~Vv~~ 212 (261)
+..+....+|++++.+-.. .+ .+.-.|+|++++.
T Consensus 43 ~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~~~ipv~~I~ 82 (95)
T TIGR00853 43 AAGEKLDDADVVLLAPQVAYMLPDLKKETDKKGIPVEVIN 82 (95)
T ss_pred HHHhhcCCCCEEEECchHHHHHHHHHHHhhhcCCCEEEeC
Confidence 4444555678888777442 23 2334688998764
No 192
>PLN03015 UDP-glucosyl transferase
Probab=71.99 E-value=20 Score=34.40 Aligned_cols=103 Identities=14% Similarity=-0.023 Sum_probs=53.5
Q ss_pred hhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCc-----------chH----HHHHHHHh
Q 024872 99 NKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNR-----------HVE----NYITGLIQ 163 (261)
Q Consensus 99 ~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~-----------~~~----~~l~~~~~ 163 (261)
+-+.-.+.+.||.+.-||...-- .+.+.+.+.-|... +..|+|+..+.. +.. +-+.+..+
T Consensus 259 ~WLd~~~~~sVvyvsFGS~~~~~---~~q~~ela~gl~~s--~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~ 333 (470)
T PLN03015 259 EWLDKQGERSVVYVCLGSGGTLT---FEQTVELAWGLELS--GQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTR 333 (470)
T ss_pred HHHHhCCCCCEEEEECCcCCcCC---HHHHHHHHHHHHhC--CCcEEEEEecCccccccccccccchhhcCChHHHHhhc
Confidence 33333445678888889985411 12344444444432 347888874210 010 01111222
Q ss_pred cCCCCEEEecCCCcchHHHHHHHcc--eeEEechHH-HHHHHHcCCCEEEE
Q 024872 164 KWPVPSILVPGGSSNLKYDAFSASR--VALCTSGTV-AVELQLARLPCVVA 211 (261)
Q Consensus 164 ~~~~~v~v~~g~~~~~~~~~~~~aD--l~i~~SGt~-tlEa~~~G~P~Vv~ 211 (261)
+-+. ++.+.. .-.++++... .+|+=.|-. |+|++.+|+|||..
T Consensus 334 ~rGl---~v~~W~--PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~ 379 (470)
T PLN03015 334 GVGL---VVTQWA--PQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAW 379 (470)
T ss_pred cCce---EEEecC--CHHHHhccCccCeEEecCCchhHHHHHHcCCCEEec
Confidence 2221 121211 2245777655 488888875 55999999999864
No 193
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=71.23 E-value=32 Score=32.52 Aligned_cols=41 Identities=12% Similarity=0.045 Sum_probs=28.6
Q ss_pred hHHHHHHHcceeEEechHH------------HHHHHHcCCCEEEEE-cCChHHH
Q 024872 179 LKYDAFSASRVALCTSGTV------------AVELQLARLPCVVAY-RAHFLTE 219 (261)
Q Consensus 179 ~~~~~~~~aDl~i~~SGt~------------tlEa~~~G~P~Vv~~-~~~~~~~ 219 (261)
++...++.||++|.-.|.. .+-|..+|+|+++.. ..+|++.
T Consensus 110 ~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gqsiGPf~~ 163 (426)
T PRK10017 110 DFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGHSVGPFQD 163 (426)
T ss_pred HHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECCcCCCcCC
Confidence 4567899999999977642 235678999988743 3345443
No 194
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=71.15 E-value=43 Score=28.17 Aligned_cols=88 Identities=15% Similarity=0.069 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCC---CEEEecCCCcchHHHHHHHcceeEEec-h--HHH
Q 024872 125 LPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV---PSILVPGGSSNLKYDAFSASRVALCTS-G--TVA 198 (261)
Q Consensus 125 ~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~---~v~v~~g~~~~~~~~~~~~aDl~i~~S-G--t~t 198 (261)
...+.+|+.-+..-. +=++++++... .....+++.++..+. .-++++|.+.+....-+.-=|++|... . ..+
T Consensus 46 ~~~L~~A~~~i~~i~-~~~ILfVgtk~-~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~dp~~~~~A 123 (196)
T TIGR01012 46 DERLRVAAKFLVRIE-PEDILVVSARI-YGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVTDPRADHQA 123 (196)
T ss_pred HHHHHHHHHHHHHhh-CCeEEEEecCH-HHHHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCCEEEEECCccccHH
Confidence 445666665554433 34677777653 334445555544433 225677754333222344455666543 1 244
Q ss_pred H-HHHHcCCCEEEEEcC
Q 024872 199 V-ELQLARLPCVVAYRA 214 (261)
Q Consensus 199 l-Ea~~~G~P~Vv~~~~ 214 (261)
+ ||..+|+|+|.+-.+
T Consensus 124 v~EA~~l~IP~Iai~DT 140 (196)
T TIGR01012 124 LKEASEVGIPIVALCDT 140 (196)
T ss_pred HHHHHHcCCCEEEEeeC
Confidence 4 999999999966443
No 195
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=70.62 E-value=74 Score=29.09 Aligned_cols=78 Identities=6% Similarity=0.108 Sum_probs=41.0
Q ss_pred CCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHH
Q 024872 106 GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFS 185 (261)
Q Consensus 106 ~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~ 185 (261)
+...|+++|-.+- ++....++.++.. ..+..+.+++.+.-...+.+-+.+++.+..+.+. +++.+++.
T Consensus 158 ~g~kia~vGD~~~---~rv~~Sl~~~l~~----~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~-----~d~~ea~~ 225 (338)
T PRK08192 158 DGMHIAMVGDLKF---GRTVHSLSRLLCM----YKNVSFTLVSPKELAMPDYVISDIENAGHKITIT-----DQLEGNLD 225 (338)
T ss_pred CCCEEEEECcCCC---CchHHHHHHHHHH----hcCCEEEEECCccccCCHHHHHHHHHcCCeEEEE-----cCHHHHHc
Confidence 4567888865321 1111223333222 2456777776543221222223344444445443 37889999
Q ss_pred HcceeEEech
Q 024872 186 ASRVALCTSG 195 (261)
Q Consensus 186 ~aDl~i~~SG 195 (261)
.||++.+..+
T Consensus 226 ~aDvvyt~~~ 235 (338)
T PRK08192 226 KADILYLTRI 235 (338)
T ss_pred cCCEEEEcCc
Confidence 9999999754
No 196
>PLN02208 glycosyltransferase family protein
Probab=69.62 E-value=26 Score=33.23 Aligned_cols=107 Identities=9% Similarity=0.041 Sum_probs=54.4
Q ss_pred HHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHH-hhhCCCeEEEEEeC-CCcc----hHHHHHHHHhcCCCCE
Q 024872 96 DFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELL-KDSFPELITVIHVA-PNRH----VENYITGLIQKWPVPS 169 (261)
Q Consensus 96 ~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l-~~~~~~~~~vi~~~-~~~~----~~~~l~~~~~~~~~~v 169 (261)
+..+-+.-.+++.+|.+.-||... .. .+.+.+.+..+ ....| +.+++-.+ +... +-+-++...++-+ +
T Consensus 240 ~~~~wLd~~~~~sVvyvSfGS~~~-l~--~~q~~e~~~~l~~s~~p-f~wv~r~~~~~~~~~~~lp~~f~~r~~~~g--~ 313 (442)
T PLN02208 240 QWSHFLSGFPPKSVVFCSLGSQII-LE--KDQFQELCLGMELTGLP-FLIAVKPPRGSSTVQEGLPEGFEERVKGRG--V 313 (442)
T ss_pred HHHHHHhcCCCCcEEEEecccccc-CC--HHHHHHHHHHHHhCCCc-EEEEEeCCCcccchhhhCCHHHHHHHhcCC--c
Confidence 344444444556788887788753 11 12355555555 23233 33444322 1000 0011122222223 2
Q ss_pred EEecCCCcchHHHHHHHcc--eeEEechHHH-HHHHHcCCCEEEE
Q 024872 170 ILVPGGSSNLKYDAFSASR--VALCTSGTVA-VELQLARLPCVVA 211 (261)
Q Consensus 170 ~v~~g~~~~~~~~~~~~aD--l~i~~SGt~t-lEa~~~G~P~Vv~ 211 (261)
.+. +.. .-.++++..+ ++||=.|..+ +|++.+|+|||..
T Consensus 314 ~v~-~W~--PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~ 355 (442)
T PLN02208 314 VWG-GWV--QQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLI 355 (442)
T ss_pred Eee-ccC--CHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEec
Confidence 221 211 2356887776 5888888754 4999999999964
No 197
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=69.10 E-value=22 Score=26.04 Aligned_cols=54 Identities=11% Similarity=0.022 Sum_probs=28.9
Q ss_pred HHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechH----HHHH--HHHcCCCEEEEE
Q 024872 158 ITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGT----VAVE--LQLARLPCVVAY 212 (261)
Q Consensus 158 l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt----~tlE--a~~~G~P~Vv~~ 212 (261)
+++.+++.+.++.+.... ..+..+.+...|++++.+=. ..++ +.-.++|+.++.
T Consensus 19 i~~~~~~~~~~~~v~~~~-~~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~~I~ 78 (96)
T cd05564 19 MKKAAEKRGIDAEIEAVP-ESELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVAVID 78 (96)
T ss_pred HHHHHHHCCCceEEEEec-HHHHHHhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEEEcC
Confidence 344444444444432211 23444556677888877643 2342 445789988764
No 198
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=68.99 E-value=20 Score=34.45 Aligned_cols=50 Identities=12% Similarity=0.244 Sum_probs=38.3
Q ss_pred CEEEecCCCcchHHHHHHHcceeEEechHHHHHHHHcCCCEEEEEcCChHHHH
Q 024872 168 PSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAYRAHFLTEW 220 (261)
Q Consensus 168 ~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tlEa~~~G~P~Vv~~~~~~~~~~ 220 (261)
+++++...+ +.-+++...|=|-|....+-.||++||+|++ ++.++|+.-|
T Consensus 209 r~~ll~edf--npisll~~~dkvy~~ts~mgfeall~~~~~~-~fg~p~yagw 258 (671)
T COG3563 209 RVHLLAEDF--NPISLLQNVDKVYCVTSQMGFEALLCGKPLT-TFGLPWYAGW 258 (671)
T ss_pred eEEEecccC--ChHHHHHhcceeEEeeccccHHHHhcCCcee-eecchhhccc
Confidence 567665432 5678999999999888777789999999987 6888775433
No 199
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=68.40 E-value=21 Score=34.25 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=25.9
Q ss_pred HHHHHHHcce--eEEechHHHH-HHHHcCCCEEEE
Q 024872 180 KYDAFSASRV--ALCTSGTVAV-ELQLARLPCVVA 211 (261)
Q Consensus 180 ~~~~~~~aDl--~i~~SGt~tl-Ea~~~G~P~Vv~ 211 (261)
-.++++..++ +|+=.|-.+. |++.+|+|||..
T Consensus 348 Q~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~ 382 (481)
T PLN02992 348 QAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAW 382 (481)
T ss_pred HHHHhCCcccCeeEecCchhHHHHHHHcCCCEEec
Confidence 4568888775 8888887555 999999999964
No 200
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=68.06 E-value=13 Score=28.97 Aligned_cols=55 Identities=18% Similarity=0.120 Sum_probs=32.2
Q ss_pred chHHHHHHHcceeEEechH-HHH-HHHHc---------CC-CEEEEEcCChHHHHHH--HhcccCCccc
Q 024872 178 NLKYDAFSASRVALCTSGT-VAV-ELQLA---------RL-PCVVAYRAHFLTEWFI--RYKAKIPYIS 232 (261)
Q Consensus 178 ~~~~~~~~~aDl~i~~SGt-~tl-Ea~~~---------G~-P~Vv~~~~~~~~~~ia--~~~~~~~~~~ 232 (261)
+-..-++..||.+|.-+|+ .|+ |+... .+ |+|+....+..+..+. ++++...|++
T Consensus 45 ~Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~ 113 (133)
T PF03641_consen 45 ERKEIMIESSDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEGFIS 113 (133)
T ss_dssp HHHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCCCCC
Confidence 3455678899999998864 577 65443 34 9887544444444332 2345455544
No 201
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=67.19 E-value=39 Score=30.53 Aligned_cols=77 Identities=10% Similarity=0.081 Sum_probs=42.9
Q ss_pred CCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHH
Q 024872 104 PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDA 183 (261)
Q Consensus 104 ~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~ 183 (261)
+++..+++++|-+..++ ..++++..+ .+++-+.+.+.+.+-.+.+.+.+++.+..+... ++..++
T Consensus 125 ~~~~~~lgiiG~G~qA~------~~l~al~~~----~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~-----~~~~ea 189 (325)
T TIGR02371 125 RKDSSVLGIIGAGRQAW------TQLEALSRV----FDLEEVSVYCRTPSTREKFALRASDYEVPVRAA-----TDPREA 189 (325)
T ss_pred CCCCCEEEEECCCHHHH------HHHHHHHhc----CCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEe-----CCHHHH
Confidence 45667889886554432 133444333 245566666665432233333333444334333 256788
Q ss_pred HHHcceeEEech
Q 024872 184 FSASRVALCTSG 195 (261)
Q Consensus 184 ~~~aDl~i~~SG 195 (261)
.+.||++++...
T Consensus 190 v~~aDiVitaT~ 201 (325)
T TIGR02371 190 VEGCDILVTTTP 201 (325)
T ss_pred hccCCEEEEecC
Confidence 999999998664
No 202
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=66.07 E-value=46 Score=29.11 Aligned_cols=89 Identities=12% Similarity=0.110 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCC---EEEecCCCcchHHHHHHHcceeEEech---HHH
Q 024872 125 LPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVP---SILVPGGSSNLKYDAFSASRVALCTSG---TVA 198 (261)
Q Consensus 125 ~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~---v~v~~g~~~~~~~~~~~~aDl~i~~SG---t~t 198 (261)
...+..|+.-+..-..+-.+++++... .....+.+.+...+.. -++++|.+.+.....+.-=|++|...- ...
T Consensus 55 ~~~L~~Aa~~i~~i~~~~~Il~Vstr~-~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~~~~~f~~P~llIV~Dp~~d~qA 133 (249)
T PTZ00254 55 WEKLKLAARVIAAIENPADVVVVSSRP-YGQRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEPRLLIVTDPRTDHQA 133 (249)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEcCH-HHHHHHHHHHHHhCCeEECCcccCCCCCCccccccCCCCEEEEeCCCcchHH
Confidence 344555554443321223466666653 3334455555433321 256667544444444445566665442 234
Q ss_pred H-HHHHcCCCEEEEEcC
Q 024872 199 V-ELQLARLPCVVAYRA 214 (261)
Q Consensus 199 l-Ea~~~G~P~Vv~~~~ 214 (261)
+ ||..+|+|+|.+-.+
T Consensus 134 I~EA~~lnIPvIal~DT 150 (249)
T PTZ00254 134 IREASYVNIPVIALCDT 150 (249)
T ss_pred HHHHHHhCCCEEEEecC
Confidence 4 999999999965443
No 203
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=66.04 E-value=75 Score=28.73 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=30.9
Q ss_pred cCCCCEEEecCCCcchHHHHHHHcceeEE-------------echHHHH--HHHHcCCCEEEEE
Q 024872 164 KWPVPSILVPGGSSNLKYDAFSASRVALC-------------TSGTVAV--ELQLARLPCVVAY 212 (261)
Q Consensus 164 ~~~~~v~v~~g~~~~~~~~~~~~aDl~i~-------------~SGt~tl--Ea~~~G~P~Vv~~ 212 (261)
+.++...++++. .+.+.|....-+|. .||+.++ -|--..+|++++.
T Consensus 211 ~~giettVI~da---aVfA~MsrVnKVIigt~avl~NGgl~~~~G~~~vAlaAk~h~vPv~VlA 271 (353)
T KOG1465|consen 211 QAGIETTVIPDA---AVFAMMSRVNKVIIGTHAVLANGGLRAPSGVHTVALAAKHHSVPVIVLA 271 (353)
T ss_pred HcCCeeEEeccH---HHHHHhhhcceEEEEeeeEecCCCeeccchHHHHHHHHHhcCCcEEEec
Confidence 445555677643 68888888776664 4576655 4445789999874
No 204
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=65.75 E-value=35 Score=26.99 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=9.6
Q ss_pred HHhhcCCCCCCcEEEEEc
Q 024872 97 FKNKYSVPSGATVISLLP 114 (261)
Q Consensus 97 ~r~~l~l~~~~~vIlll~ 114 (261)
+.+++|++-+.+.+++.+
T Consensus 18 ll~~~~~~~~gk~v~VvG 35 (140)
T cd05212 18 LLNKEGVRLDGKKVLVVG 35 (140)
T ss_pred HHHHcCCCCCCCEEEEEC
Confidence 344556555555555553
No 205
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=65.40 E-value=61 Score=29.60 Aligned_cols=54 Identities=13% Similarity=0.192 Sum_probs=37.1
Q ss_pred HhcCCCCEEEecCCCcchHHHHHH--HcceeEEe-------------chHHHH--HHHHcCCCEEEEEcCChHH
Q 024872 162 IQKWPVPSILVPGGSSNLKYDAFS--ASRVALCT-------------SGTVAV--ELQLARLPCVVAYRAHFLT 218 (261)
Q Consensus 162 ~~~~~~~v~v~~g~~~~~~~~~~~--~aDl~i~~-------------SGt~tl--Ea~~~G~P~Vv~~~~~~~~ 218 (261)
+.+.++++.++++ .-...+|+ ..|.++.- .||..+ =|-.+|+|++++-....++
T Consensus 202 L~~~GI~vtlI~D---sav~~~m~~~~vd~VivGAd~v~~nG~v~nkiGT~~lA~~Ak~~~vPfyV~a~~~kfd 272 (331)
T TIGR00512 202 LVQEGIPATLITD---SMAAHLMKHGEVDAVIVGADRIAANGDTANKIGTYQLAVLAKHHGVPFYVAAPTSTID 272 (331)
T ss_pred HHHCCCCEEEEcc---cHHHHHhcccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEeccccccc
Confidence 4556788888764 25677887 68888763 366554 5667899999876655554
No 206
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=64.20 E-value=76 Score=28.21 Aligned_cols=87 Identities=9% Similarity=0.083 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecC-CCcchHHHHHHHcceeEEechHHHH-HHHH
Q 024872 126 PIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPG-GSSNLKYDAFSASRVALCTSGTVAV-ELQL 203 (261)
Q Consensus 126 ~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g-~~~~~~~~~~~~aDl~i~~SGt~tl-Ea~~ 203 (261)
..+.+|++.+.++.++..|++.++. . +..++.+........+... ...+|+. +|+.||-.|...+|=.- =|.+
T Consensus 191 ~Yy~~Ai~~i~~~~~~~~f~ifSDD-~---~w~k~~l~~~~~~~~~~~~~~~~~Dl~-lms~C~~~IisnSTFswW~a~L 265 (298)
T PF01531_consen 191 DYYKKAIEYIREKVKNPKFFIFSDD-I---EWCKENLKFSNGDVYFSGNNSPYEDLY-LMSQCKHFIISNSTFSWWAAYL 265 (298)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCC-H---HHHHHHHhhcCCcEEEECCCCHHHHHH-HHHhCCcEEECCChHHHHHHHH
Confidence 4678899999888888888887653 2 2334434332222333322 2245776 68999999988877444 4555
Q ss_pred cCCCEEEEEcCChH
Q 024872 204 ARLPCVVAYRAHFL 217 (261)
Q Consensus 204 ~G~P~Vv~~~~~~~ 217 (261)
.+-+-|++.+..+.
T Consensus 266 ~~~~~i~i~p~~w~ 279 (298)
T PF01531_consen 266 SKNDKIVIAPIKWF 279 (298)
T ss_pred CCCCCEEEECCccc
Confidence 56666655444443
No 207
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=63.58 E-value=37 Score=27.54 Aligned_cols=19 Identities=5% Similarity=0.092 Sum_probs=11.2
Q ss_pred chHHHHHHHcceeEEechH
Q 024872 178 NLKYDAFSASRVALCTSGT 196 (261)
Q Consensus 178 ~~~~~~~~~aDl~i~~SGt 196 (261)
.+..+..+.||++|+..|.
T Consensus 71 ~~l~~~~~~ADIVVsa~G~ 89 (160)
T PF02882_consen 71 KNLQEITRRADIVVSAVGK 89 (160)
T ss_dssp SSHHHHHTTSSEEEE-SSS
T ss_pred CcccceeeeccEEeeeecc
Confidence 3556666667777766654
No 208
>PRK06823 ornithine cyclodeaminase; Validated
Probab=63.11 E-value=41 Score=30.36 Aligned_cols=77 Identities=6% Similarity=-0.039 Sum_probs=42.9
Q ss_pred CCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHH
Q 024872 104 PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDA 183 (261)
Q Consensus 104 ~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~ 183 (261)
+++..+++++|-+..+. ..++++..+. +++-|.+.+.+.+..+.+.+..++.+.++... ++..+.
T Consensus 125 ~~d~~~l~iiG~G~qA~------~~~~a~~~v~----~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~-----~~~~~a 189 (315)
T PRK06823 125 PQHVSAIGIVGTGIQAR------MQLMYLKNVT----DCRQLWVWGRSETALEEYRQYAQALGFAVNTT-----LDAAEV 189 (315)
T ss_pred CCCCCEEEEECCcHHHH------HHHHHHHhcC----CCCEEEEECCCHHHHHHHHHHHHhcCCcEEEE-----CCHHHH
Confidence 45777888885443321 2333433332 35556666665432233334444434444433 257888
Q ss_pred HHHcceeEEech
Q 024872 184 FSASRVALCTSG 195 (261)
Q Consensus 184 ~~~aDl~i~~SG 195 (261)
.+.||+++|.++
T Consensus 190 v~~ADIV~taT~ 201 (315)
T PRK06823 190 AHAANLIVTTTP 201 (315)
T ss_pred hcCCCEEEEecC
Confidence 999999998764
No 209
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=63.04 E-value=1.1e+02 Score=28.47 Aligned_cols=37 Identities=8% Similarity=-0.067 Sum_probs=25.5
Q ss_pred chHHHHHHH--cceeEEechH-----HHHHHHHcCCCEEEEEcC
Q 024872 178 NLKYDAFSA--SRVALCTSGT-----VAVELQLARLPCVVAYRA 214 (261)
Q Consensus 178 ~~~~~~~~~--aDl~i~~SGt-----~tlEa~~~G~P~Vv~~~~ 214 (261)
+.+.++.+. +|++|...++ -|++|.-.|+++.+..|-
T Consensus 81 ~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLANKE 124 (385)
T PRK05447 81 EGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALANKE 124 (385)
T ss_pred hHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeCHH
Confidence 345556554 5888876632 477999999998875543
No 210
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=62.58 E-value=47 Score=29.86 Aligned_cols=83 Identities=8% Similarity=0.049 Sum_probs=45.4
Q ss_pred HhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCc
Q 024872 98 KNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSS 177 (261)
Q Consensus 98 r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~ 177 (261)
++++|- -++..|+++|..+.. +....++.++..+ ++.+.+++.+..+..+.+.+.+++.+..+.+.
T Consensus 142 ~e~~g~-l~g~~va~vGD~~~~---~v~~Sl~~~~a~~-----g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~----- 207 (301)
T TIGR00670 142 YEEFGR-LDGLKIALVGDLKYG---RTVHSLAEALTRF-----GVEVYLISPEELRMPKEILEELKAKGIKVRET----- 207 (301)
T ss_pred HHHhCC-CCCCEEEEEccCCCC---cHHHHHHHHHHHc-----CCEEEEECCccccCCHHHHHHHHHcCCEEEEE-----
Confidence 445562 344678888764321 1122344444443 57777776543212222333344445445443
Q ss_pred chHHHHHHHcceeEEec
Q 024872 178 NLKYDAFSASRVALCTS 194 (261)
Q Consensus 178 ~~~~~~~~~aDl~i~~S 194 (261)
+++.+.++.||++.+.+
T Consensus 208 ~d~~~a~~~aDvvyt~~ 224 (301)
T TIGR00670 208 ESLEEVIDEADVLYVTR 224 (301)
T ss_pred CCHHHHhCCCCEEEECC
Confidence 37899999999999865
No 211
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=62.21 E-value=86 Score=26.56 Aligned_cols=88 Identities=10% Similarity=0.084 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCC---EEEecCCCcchHHHHHHHcceeEEec----hHH
Q 024872 125 LPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVP---SILVPGGSSNLKYDAFSASRVALCTS----GTV 197 (261)
Q Consensus 125 ~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~---v~v~~g~~~~~~~~~~~~aDl~i~~S----Gt~ 197 (261)
...+..|+.-+.... +=++++++.. ......+++.++..+.. -++++|.+.+....-+.-=|++|... -.+
T Consensus 52 ~~~L~~A~~~i~~~~-~~~ILfVgTk-~~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~~~~~~Pdliiv~dp~~~~~A 129 (204)
T PRK04020 52 DERIRIAAKFLSRYE-PEKILVVSSR-QYGQKPVQKFAEVVGAKAITGRFIPGTLTNPSLKGYIEPDVVVVTDPRGDAQA 129 (204)
T ss_pred HHHHHHHHHHHHHhc-CCeEEEEeCC-HHHHHHHHHHHHHhCCeeecCccCCCcCcCcchhccCCCCEEEEECCcccHHH
Confidence 445666665555433 3467777665 33445555555544322 24666654333222233445555544 224
Q ss_pred HHHHHHcCCCEEEEEcC
Q 024872 198 AVELQLARLPCVVAYRA 214 (261)
Q Consensus 198 tlEa~~~G~P~Vv~~~~ 214 (261)
..||..+|+|+|.+-.+
T Consensus 130 I~EA~kl~IP~IaivDT 146 (204)
T PRK04020 130 VKEAIEVGIPVVALCDT 146 (204)
T ss_pred HHHHHHhCCCEEEEEeC
Confidence 44999999999966443
No 212
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=60.91 E-value=65 Score=23.74 Aligned_cols=66 Identities=14% Similarity=0.188 Sum_probs=43.8
Q ss_pred hCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHH--HcceeEEechH-----HHHHHHHcCCCEEE
Q 024872 138 SFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFS--ASRVALCTSGT-----VAVELQLARLPCVV 210 (261)
Q Consensus 138 ~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~--~aDl~i~~SGt-----~tlEa~~~G~P~Vv 210 (261)
..++++++.+++++. +..+...+.++.+ ..+ +..++++ ..|+++..+.+ .+.+++..|+++++
T Consensus 22 ~~~~~~v~~v~d~~~---~~~~~~~~~~~~~--~~~-----~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 22 SSPDFEVVAVCDPDP---ERAEAFAEKYGIP--VYT-----DLEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLV 91 (120)
T ss_dssp TTTTEEEEEEECSSH---HHHHHHHHHTTSE--EES-----SHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEE
T ss_pred cCCCcEEEEEEeCCH---HHHHHHHHHhccc--chh-----HHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEE
Confidence 347888888888753 2234445566644 332 5677777 68998887743 45599999998764
Q ss_pred EEcC
Q 024872 211 AYRA 214 (261)
Q Consensus 211 ~~~~ 214 (261)
-|-
T Consensus 92 -EKP 94 (120)
T PF01408_consen 92 -EKP 94 (120)
T ss_dssp -ESS
T ss_pred -EcC
Confidence 543
No 213
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=60.83 E-value=1.3e+02 Score=28.45 Aligned_cols=71 Identities=11% Similarity=0.095 Sum_probs=41.6
Q ss_pred HHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechH-------HHH-HHHH
Q 024872 132 VELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGT-------VAV-ELQL 203 (261)
Q Consensus 132 ~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt-------~tl-Ea~~ 203 (261)
++.|.+ .+++-+.++..+ + +..++++++++. .+.. .+++.+.+..+|++|+.+|+ .-+ +++.
T Consensus 194 a~~L~~--~g~~~i~IaNRT--~-erA~~La~~~~~--~~~~---l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~ 263 (414)
T COG0373 194 AKHLAE--KGVKKITIANRT--L-ERAEELAKKLGA--EAVA---LEELLEALAEADVVISSTSAPHPIITREMVERALK 263 (414)
T ss_pred HHHHHh--CCCCEEEEEcCC--H-HHHHHHHHHhCC--eeec---HHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHh
Confidence 344544 245555666543 2 334555666652 3332 35899999999999999875 333 4444
Q ss_pred cCCCEEEEE
Q 024872 204 ARLPCVVAY 212 (261)
Q Consensus 204 ~G~P~Vv~~ 212 (261)
-...+++++
T Consensus 264 ~r~~~livD 272 (414)
T COG0373 264 IRKRLLIVD 272 (414)
T ss_pred cccCeEEEE
Confidence 444455554
No 214
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=59.98 E-value=16 Score=27.37 Aligned_cols=33 Identities=12% Similarity=0.171 Sum_probs=23.9
Q ss_pred HHHHHHcceeEEe-------chHHHH--HHHHcCCCEEEEEc
Q 024872 181 YDAFSASRVALCT-------SGTVAV--ELQLARLPCVVAYR 213 (261)
Q Consensus 181 ~~~~~~aDl~i~~-------SGt~tl--Ea~~~G~P~Vv~~~ 213 (261)
.+.+..||++|+- +||... =|.++|+|+++...
T Consensus 56 ~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~ 97 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTE 97 (113)
T ss_dssp HHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEc
Confidence 4789999999972 355432 46789999997654
No 215
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=59.52 E-value=15 Score=28.83 Aligned_cols=45 Identities=16% Similarity=-0.005 Sum_probs=30.1
Q ss_pred HHHHHHcceeEEechH------H---HHHHHHcCCCEEEEEcC---ChHHHHHHHhc
Q 024872 181 YDAFSASRVALCTSGT------V---AVELQLARLPCVVAYRA---HFLTEWFIRYK 225 (261)
Q Consensus 181 ~~~~~~aDl~i~~SGt------~---tlEa~~~G~P~Vv~~~~---~~~~~~ia~~~ 225 (261)
..++..||++|.+=|- + +-=|+++|+|.|++.+- .++.+.=++.+
T Consensus 67 ~~li~~aDvVVvrFGekYKQWNaAfDAg~a~AlgKplI~lh~~~~~HpLKEvda~A~ 123 (141)
T PF11071_consen 67 RTLIEKADVVVVRFGEKYKQWNAAFDAGYAAALGKPLITLHPEELHHPLKEVDAAAL 123 (141)
T ss_pred HHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhccccHHHHhHhhH
Confidence 4578888888888872 1 22578999999987542 45555444433
No 216
>PRK13660 hypothetical protein; Provisional
Probab=59.39 E-value=35 Score=28.40 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=28.0
Q ss_pred CcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeC
Q 024872 107 ATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVA 149 (261)
Q Consensus 107 ~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~ 149 (261)
.-.-++.||..|.+. .-.+++-+|.+++|++++.++..
T Consensus 42 G~~wfi~ggalG~d~-----wAaEvvl~LK~~yp~lkL~~~~P 79 (182)
T PRK13660 42 GLEWVIISGQLGVEL-----WAAEVVLELKEEYPDLKLAVITP 79 (182)
T ss_pred CCCEEEECCcchHHH-----HHHHHHHHHHhhCCCeEEEEEeC
Confidence 344666889888653 34567778888899999888764
No 217
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=58.60 E-value=1e+02 Score=25.23 Aligned_cols=18 Identities=11% Similarity=0.206 Sum_probs=14.4
Q ss_pred chHHHHHHHcceeEEech
Q 024872 178 NLKYDAFSASRVALCTSG 195 (261)
Q Consensus 178 ~~~~~~~~~aDl~i~~SG 195 (261)
++..+.++.+|++|+.+.
T Consensus 89 ~~~~~~~~~~diVi~at~ 106 (194)
T cd01078 89 AARAAAIKGADVVFAAGA 106 (194)
T ss_pred HHHHHHHhcCCEEEECCC
Confidence 456788999999998764
No 218
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=58.02 E-value=70 Score=23.76 Aligned_cols=39 Identities=15% Similarity=0.286 Sum_probs=24.4
Q ss_pred HHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCE
Q 024872 131 TVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPS 169 (261)
Q Consensus 131 a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v 169 (261)
.++++.+.+|+.+||++|+..+.--+...+.++++..++
T Consensus 54 ~i~~i~~~fP~~kfiLIGDsgq~DpeiY~~ia~~~P~~i 92 (100)
T PF09949_consen 54 NIERILRDFPERKFILIGDSGQHDPEIYAEIARRFPGRI 92 (100)
T ss_pred HHHHHHHHCCCCcEEEEeeCCCcCHHHHHHHHHHCCCCE
Confidence 456677788999999999854321233344555554443
No 219
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=56.99 E-value=36 Score=35.21 Aligned_cols=95 Identities=18% Similarity=0.238 Sum_probs=57.9
Q ss_pred EEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCe----EEEEEeCCCc----chH---HHHHHHHh----cCCC----CEEE
Q 024872 111 SLLPGSRLQEVARMLPIFAKTVELLKDSFPEL----ITVIHVAPNR----HVE---NYITGLIQ----KWPV----PSIL 171 (261)
Q Consensus 111 lll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~----~~vi~~~~~~----~~~---~~l~~~~~----~~~~----~v~v 171 (261)
++++--|....|+ ++.=+.|++++.+++|++ .+|-++-++. +++ ..+++.+. +++. ++++
T Consensus 341 ~ilgVDrlD~~KG-i~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~ 419 (854)
T PLN02205 341 MLLGVDDMDIFKG-ISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVL 419 (854)
T ss_pred EEEEccCcccccC-HHHHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEE
Confidence 3356688876665 566778999999888875 3443433321 122 12222222 1221 4555
Q ss_pred ecC-CCcchHHHHHHHcceeEEec---hH--HHHHHHHcCC
Q 024872 172 VPG-GSSNLKYDAFSASRVALCTS---GT--VAVELQLARL 206 (261)
Q Consensus 172 ~~g-~~~~~~~~~~~~aDl~i~~S---Gt--~tlEa~~~G~ 206 (261)
+.. ...++..++|++||+++..| |. +..|-.+|..
T Consensus 420 ~~~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia~~~ 460 (854)
T PLN02205 420 IDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQ 460 (854)
T ss_pred EecCCCHHHHHHHHHhccEEEeccccccccccchheeEEcc
Confidence 532 22568899999999999998 65 4448887764
No 220
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=56.44 E-value=46 Score=23.42 Aligned_cols=58 Identities=14% Similarity=0.023 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechHHH-HHHHHcCCCEEEEEcC
Q 024872 156 NYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVA-VELQLARLPCVVAYRA 214 (261)
Q Consensus 156 ~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~t-lEa~~~G~P~Vv~~~~ 214 (261)
..+++.+++.+..+.+.... ..+.......+|++++.+-... -+.-..++|+.++...
T Consensus 18 ~~i~~~~~~~gi~~~~~~~~-~~~~~~~~~~~D~il~~~~i~~~~~~~~~~~pv~~I~~~ 76 (90)
T PF02302_consen 18 NKIKKALKELGIEVEVSAGS-ILEVEEIADDADLILLTPQIAYEDLKEFAGKPVPVIPVE 76 (90)
T ss_dssp HHHHHHHHHTTECEEEEEEE-TTTHHHHHTT-SEEEEEESSGGHHHHHHTTSBEEEEEHH
T ss_pred HHHHHHHHhccCceEEEEec-ccccccccCCCcEEEEcCccchhhhhhhcCCeEEEEEch
Confidence 34555556565544433221 2245566677999998886552 3344455786655433
No 221
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=56.26 E-value=54 Score=30.10 Aligned_cols=32 Identities=13% Similarity=0.076 Sum_probs=23.1
Q ss_pred chHHHHHHHcceeEEechH----HHH-HHHHcCCCEE
Q 024872 178 NLKYDAFSASRVALCTSGT----VAV-ELQLARLPCV 209 (261)
Q Consensus 178 ~~~~~~~~~aDl~i~~SGt----~tl-Ea~~~G~P~V 209 (261)
+++.++++.+|++|..+|. ..+ -|...|++.|
T Consensus 59 ~~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~~yv 95 (386)
T PF03435_consen 59 ESLAELLRGCDVVINCAGPFFGEPVARACIEAGVHYV 95 (386)
T ss_dssp HHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT-EEE
T ss_pred HHHHHHHhcCCEEEECCccchhHHHHHHHHHhCCCee
Confidence 3578999999999998863 233 6778899876
No 222
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=56.13 E-value=73 Score=28.61 Aligned_cols=80 Identities=9% Similarity=0.150 Sum_probs=38.3
Q ss_pred CCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHH
Q 024872 104 PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDA 183 (261)
Q Consensus 104 ~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~ 183 (261)
+++..+++++|-+..+. .-++++..+ +| ++=|.+.+.+.+..+.+.+.+++.+..+... ++..++
T Consensus 125 ~~~~~~l~viGaG~QA~------~~~~a~~~~---~~-i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~-----~~~~~a 189 (313)
T PF02423_consen 125 RPDARTLGVIGAGVQAR------WHLRALAAV---RP-IKEVRVYSRSPERAEAFAARLRDLGVPVVAV-----DSAEEA 189 (313)
T ss_dssp -TT--EEEEE--SHHHH------HHHHHHHHH---S---SEEEEE-SSHHHHHHHHHHHHCCCTCEEEE-----SSHHHH
T ss_pred cCCCceEEEECCCHHHH------HHHHHHHHh---CC-ceEEEEEccChhHHHHHHHhhccccccceec-----cchhhh
Confidence 45666888886544332 123343333 34 5555566665432233444444444445433 367899
Q ss_pred HHHcceeEEechHHH
Q 024872 184 FSASRVALCTSGTVA 198 (261)
Q Consensus 184 ~~~aDl~i~~SGt~t 198 (261)
.+.||++++..+..+
T Consensus 190 v~~aDii~taT~s~~ 204 (313)
T PF02423_consen 190 VRGADIIVTATPSTT 204 (313)
T ss_dssp HTTSSEEEE----SS
T ss_pred cccCCEEEEccCCCC
Confidence 999999999876554
No 223
>PRK07589 ornithine cyclodeaminase; Validated
Probab=55.98 E-value=99 Score=28.37 Aligned_cols=78 Identities=6% Similarity=0.019 Sum_probs=42.0
Q ss_pred CCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHH
Q 024872 104 PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDA 183 (261)
Q Consensus 104 ~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~ 183 (261)
+++..+++++|-+..+. ..++++..+. +++=|.+.+.+.+..+.+.+.+++.+.++.+. ++..++
T Consensus 126 r~da~~l~iiGaG~QA~------~~l~a~~~vr----~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~-----~~~~~a 190 (346)
T PRK07589 126 RPDSRTMALIGNGAQSE------FQALAFKALL----GIEEIRLYDIDPAATAKLARNLAGPGLRIVAC-----RSVAEA 190 (346)
T ss_pred cCCCcEEEEECCcHHHH------HHHHHHHHhC----CceEEEEEeCCHHHHHHHHHHHHhcCCcEEEe-----CCHHHH
Confidence 45677788885444332 2334444443 24444444554332222333333333344433 367899
Q ss_pred HHHcceeEEechH
Q 024872 184 FSASRVALCTSGT 196 (261)
Q Consensus 184 ~~~aDl~i~~SGt 196 (261)
.+.||+++|.+.+
T Consensus 191 v~~ADIIvtaT~S 203 (346)
T PRK07589 191 VEGADIITTVTAD 203 (346)
T ss_pred HhcCCEEEEecCC
Confidence 9999999997753
No 224
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.87 E-value=79 Score=28.50 Aligned_cols=112 Identities=15% Similarity=0.133 Sum_probs=66.6
Q ss_pred cHHHHhhcCCCCCC-cEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhc----C---
Q 024872 94 SEDFKNKYSVPSGA-TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQK----W--- 165 (261)
Q Consensus 94 ~~~~r~~l~l~~~~-~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~----~--- 165 (261)
.+.+++++|+++.- +.+.++ +. -+..+|..++ .+.+....+-++++.|.. ..+ +.+.... .
T Consensus 164 ~~~l~~rlgv~ek~~~~~slF--aY---~npa~~s~ie---q~r~a~~p~llL~~e~~~--~~~-~~~~~~~~~~a~Gdv 232 (370)
T COG4394 164 AEYLLERLGVNEKYDLIASLF--AY---ENPALPSWIE---QLRKADKPILLLIPEGKT--QAN-FAKYFDNNNNADGDV 232 (370)
T ss_pred HHHHHHHcCCchhhchhhhhh--cc---CCcchHHHHH---HHHhcCCCEEEEcccchH--HHH-HHHHcCCCcccccch
Confidence 35677899998632 334444 22 1234555655 444333446666665532 122 2222211 0
Q ss_pred ----CCCEEEecCCCcchHHHHHHHcceeEEechHHHHHHHHcCCCEE-EEEcCCh
Q 024872 166 ----PVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCV-VAYRAHF 216 (261)
Q Consensus 166 ----~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tlEa~~~G~P~V-v~~~~~~ 216 (261)
.+++.+++...+++..+++..||+-+.+.--+-.-|..+|+|.+ =+|+-+-
T Consensus 233 ~~~~~lrvvklPFvpqddyd~LL~lcD~n~VRGEDSFVRAq~agkPflWHIYpQde 288 (370)
T COG4394 233 FQTAKLRVVKLPFVPQDDYDELLWLCDFNLVRGEDSFVRAQLAGKPFLWHIYPQDE 288 (370)
T ss_pred hcccceEEEEecCCcHhHHHHHHHhcccceeecchHHHHHHHcCCCcEEEecCCcc
Confidence 12344455444778999999999999997777779999999998 4476553
No 225
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=55.63 E-value=1.4e+02 Score=26.97 Aligned_cols=83 Identities=8% Similarity=-0.003 Sum_probs=46.2
Q ss_pred HHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcc----hHHHHHHHHhcCCCCEEE
Q 024872 96 DFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRH----VENYITGLIQKWPVPSIL 171 (261)
Q Consensus 96 ~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~----~~~~l~~~~~~~~~~v~v 171 (261)
-+++++|-- ....++.+|.+ +.....++.+..++ ++.+.+++...-. +.+..++.+++.+..+.+
T Consensus 143 Ti~E~~g~l-~g~k~a~vGDg-----NNv~nSl~~~~a~~-----G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~ 211 (310)
T COG0078 143 TIKEHFGSL-KGLKLAYVGDG-----NNVANSLLLAAAKL-----GMDVRIATPKGYEPDPEVVEKAKENAKESGGKITL 211 (310)
T ss_pred HHHHhcCcc-cCcEEEEEcCc-----chHHHHHHHHHHHh-----CCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEE
Confidence 345666632 34457778665 22223455555554 5666666653221 222223333333434555
Q ss_pred ecCCCcchHHHHHHHcceeEEec
Q 024872 172 VPGGSSNLKYDAFSASRVALCTS 194 (261)
Q Consensus 172 ~~g~~~~~~~~~~~~aDl~i~~S 194 (261)
. +|..+..+.||++.+..
T Consensus 212 t-----~d~~eAv~gADvvyTDv 229 (310)
T COG0078 212 T-----EDPEEAVKGADVVYTDV 229 (310)
T ss_pred e-----cCHHHHhCCCCEEEecC
Confidence 4 37889999999999977
No 226
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=54.48 E-value=74 Score=30.67 Aligned_cols=101 Identities=27% Similarity=0.332 Sum_probs=57.8
Q ss_pred CcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCe----EEEEEeCCCc-chH------HHHHHHHhc----CC----C
Q 024872 107 ATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPEL----ITVIHVAPNR-HVE------NYITGLIQK----WP----V 167 (261)
Q Consensus 107 ~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~----~~vi~~~~~~-~~~------~~l~~~~~~----~~----~ 167 (261)
+++| ++--|...+|+ .+.-+.|+++|.+++|.+ .++-++.++. +.. ..++..+.+ .| .
T Consensus 282 ~kii--vgvDRlDy~kG-i~~rl~Afe~lL~~~Pe~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~ 358 (486)
T COG0380 282 KKLI--VGVDRLDYSKG-IPQRLLAFERLLEEYPEWRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWT 358 (486)
T ss_pred ceEE--EEehhcccccC-cHHHHHHHHHHHHhChhhhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcc
Confidence 4444 33367666665 566777999999887753 3444444332 111 112222221 12 1
Q ss_pred CEEEecC-CCcchHHHHHHHcceeEEec---hH--HHHHHHHcCC--CEEE
Q 024872 168 PSILVPG-GSSNLKYDAFSASRVALCTS---GT--VAVELQLARL--PCVV 210 (261)
Q Consensus 168 ~v~v~~g-~~~~~~~~~~~~aDl~i~~S---Gt--~tlEa~~~G~--P~Vv 210 (261)
+++++.- ...++..++++.||+.+..| |. +..|-.++.- |-++
T Consensus 359 Pv~~l~~~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa~q~~~~G~L 409 (486)
T COG0380 359 PVHYLHRDLDRNELLALYRAADVMLVTPLRDGMNLVAKEYVAAQRDKPGVL 409 (486)
T ss_pred eeEEEeccCCHHHHHHHHhhhceeeeccccccccHHHHHHHHhhcCCCCcE
Confidence 4554432 12568899999999999988 54 4448777765 4443
No 227
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=53.41 E-value=22 Score=28.00 Aligned_cols=43 Identities=16% Similarity=0.072 Sum_probs=29.0
Q ss_pred HHHHHHcceeEEechH------H---HHHHHHcCCCEEEEEcC---ChHHHHHHH
Q 024872 181 YDAFSASRVALCTSGT------V---AVELQLARLPCVVAYRA---HFLTEWFIR 223 (261)
Q Consensus 181 ~~~~~~aDl~i~~SGt------~---tlEa~~~G~P~Vv~~~~---~~~~~~ia~ 223 (261)
..++..||++|.+=|- + +-=|+++|+|.|++.+- .++.+-=+.
T Consensus 70 ~~li~~aDvvVvrFGekYKQWNaAfDAg~aaAlgKplI~lh~~~~~HpLKEvdaa 124 (144)
T TIGR03646 70 RKLIEKADVVIALFGEKYKQWNAAFDAGYAAALGKPLIILRPEELIHPLKEVDNK 124 (144)
T ss_pred HHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhccccHHHHhHH
Confidence 4578888888888873 1 22578999999987542 455554343
No 228
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=51.77 E-value=11 Score=26.65 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=16.4
Q ss_pred HHHHHHHcCCCEEEEEcCChHHHHH
Q 024872 197 VAVELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 197 ~tlEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
-.+|+|++|+|+|. ...+.+...+
T Consensus 14 r~~E~~a~G~~vi~-~~~~~~~~~~ 37 (92)
T PF13524_consen 14 RIFEAMACGTPVIS-DDSPGLREIF 37 (92)
T ss_pred HHHHHHHCCCeEEE-CChHHHHHHc
Confidence 45699999999885 4444554443
No 229
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=51.04 E-value=21 Score=34.74 Aligned_cols=73 Identities=14% Similarity=0.050 Sum_probs=41.9
Q ss_pred cEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHH-HHHhcCCCCEEEecCCCcchHHHHH--
Q 024872 108 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYIT-GLIQKWPVPSILVPGGSSNLKYDAF-- 184 (261)
Q Consensus 108 ~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~-~~~~~~~~~v~v~~g~~~~~~~~~~-- 184 (261)
.+|.++||+||.-+. ..++|+++.. ..++++.+ .+|++.--.++ ...+.|..+|.++.+ ||.+|-
T Consensus 369 tVimvlGaGRGPLv~----~~lkaa~~~~---RkVklyav-EKNPNAivtL~~~n~~~W~~~Vtii~~----DMR~w~ap 436 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVD----ASLKAAEETD---RKVKLYAV-EKNPNAIVTLQNRNFECWDNRVTIISS----DMRKWNAP 436 (649)
T ss_pred EEEEEecCCCccHHH----HHHHHHHHhc---CceEEEEE-ecCcchhhhhhhhchhhhcCeeEEEec----cccccCCc
Confidence 578889999996333 3556665554 25665554 45554111122 223456667777753 566554
Q ss_pred -HHcceeEE
Q 024872 185 -SASRVALC 192 (261)
Q Consensus 185 -~~aDl~i~ 192 (261)
-.+|+.|+
T Consensus 437 ~eq~DI~VS 445 (649)
T KOG0822|consen 437 REQADIIVS 445 (649)
T ss_pred hhhccchHH
Confidence 35788775
No 230
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=50.82 E-value=2e+02 Score=26.44 Aligned_cols=101 Identities=14% Similarity=0.126 Sum_probs=55.1
Q ss_pred CCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHH
Q 024872 105 SGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAF 184 (261)
Q Consensus 105 ~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~ 184 (261)
+..++|-+-..|-| |++. +...++.|.+..|++++++.+...... +..++.. ..+..+.+++-.....+..++
T Consensus 48 ~~~~~iW~Ha~s~G-e~~~----~~~l~~~l~~~~~~~~i~~t~~t~~~~-~~~~~~~-~~~~~~~~~P~d~~~~~~~~l 120 (425)
T PRK05749 48 PKGPLIWFHAVSVG-ETRA----AIPLIRALRKRYPDLPILVTTMTPTGS-ERAQALF-GDDVEHRYLPYDLPGAVRRFL 120 (425)
T ss_pred CCCCeEEEEeCCHH-HHHH----HHHHHHHHHHhCCCCcEEEeCCCccHH-HHHHHhc-CCCceEEEecCCcHHHHHHHH
Confidence 34567888888888 6554 444556677777888877665432222 2222211 112233344321111233444
Q ss_pred HH--cceeEEech---HHHH-HHHHcCCCEEEEE
Q 024872 185 SA--SRVALCTSG---TVAV-ELQLARLPCVVAY 212 (261)
Q Consensus 185 ~~--aDl~i~~SG---t~tl-Ea~~~G~P~Vv~~ 212 (261)
+. -|++++..+ ...+ .+-..|+|++++.
T Consensus 121 ~~~~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 121 RFWRPKLVIIMETELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred HhhCCCEEEEEecchhHHHHHHHHHCCCCEEEEe
Confidence 32 488886532 2334 6777899999763
No 231
>PRK06199 ornithine cyclodeaminase; Validated
Probab=50.72 E-value=82 Score=29.28 Aligned_cols=78 Identities=9% Similarity=0.121 Sum_probs=42.2
Q ss_pred CCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHh-cC-CC-CEEEecCCCcchH
Q 024872 104 PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQ-KW-PV-PSILVPGGSSNLK 180 (261)
Q Consensus 104 ~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~-~~-~~-~v~v~~g~~~~~~ 180 (261)
+++..+++++|-+..+. ..++++..+ +|+++-|.+.+.+.+..+.+.+.+. .+ +. ++.+. ++.
T Consensus 152 r~da~~l~iiG~G~QA~------~~l~a~~~v---~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~-----~s~ 217 (379)
T PRK06199 152 RKDSKVVGLLGPGVMGK------TILAAFMAV---CPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVV-----DSI 217 (379)
T ss_pred cCCCCEEEEECCcHHHH------HHHHHHHHh---cCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEe-----CCH
Confidence 45777888885443321 233444443 3556666666665432222333232 22 22 24333 367
Q ss_pred HHHHHHcceeEEech
Q 024872 181 YDAFSASRVALCTSG 195 (261)
Q Consensus 181 ~~~~~~aDl~i~~SG 195 (261)
.++.+.||+++|...
T Consensus 218 ~eav~~ADIVvtaT~ 232 (379)
T PRK06199 218 EEVVRGSDIVTYCNS 232 (379)
T ss_pred HHHHcCCCEEEEccC
Confidence 889999999997553
No 232
>PLN02342 ornithine carbamoyltransferase
Probab=50.06 E-value=2.1e+02 Score=26.34 Aligned_cols=81 Identities=7% Similarity=-0.002 Sum_probs=42.9
Q ss_pred HhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCC-CEEEecCCC
Q 024872 98 KNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPV-PSILVPGGS 176 (261)
Q Consensus 98 r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~-~v~v~~g~~ 176 (261)
++++|- -++..|+++|... +....++.++..+ ++.+.+++.+.....+.+-+.+++++. .+.+.
T Consensus 186 ~e~~G~-l~glkva~vGD~~-----nva~Sli~~~~~~-----G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~---- 250 (348)
T PLN02342 186 IEHIGR-LEGTKVVYVGDGN-----NIVHSWLLLAAVL-----PFHFVCACPKGYEPDAKTVEKARAAGISKIEIT---- 250 (348)
T ss_pred HHHhCC-cCCCEEEEECCCc-----hhHHHHHHHHHHc-----CCEEEEECCcccccCHHHHHHHHHhCCCcEEEE----
Confidence 445552 3445677775421 2222344444333 577777665432211222223333442 34443
Q ss_pred cchHHHHHHHcceeEEec
Q 024872 177 SNLKYDAFSASRVALCTS 194 (261)
Q Consensus 177 ~~~~~~~~~~aDl~i~~S 194 (261)
+++.+++..||++.+.+
T Consensus 251 -~d~~eav~~aDVvy~~~ 267 (348)
T PLN02342 251 -NDPAEAVKGADVVYTDV 267 (348)
T ss_pred -cCHHHHhCCCCEEEECC
Confidence 47889999999999975
No 233
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=49.90 E-value=19 Score=30.22 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=17.0
Q ss_pred EEechHH--HHHHHHcCCCEEEEE
Q 024872 191 LCTSGTV--AVELQLARLPCVVAY 212 (261)
Q Consensus 191 i~~SGt~--tlEa~~~G~P~Vv~~ 212 (261)
+.-|||+ ++|++..|+|.|.+.
T Consensus 109 v~~SGTVgAA~ea~~~GipaIA~S 132 (196)
T PF01975_consen 109 VLYSGTVGAAMEAALRGIPAIAVS 132 (196)
T ss_dssp GGG-HHHHHHHHHHHTTSEEEEEE
T ss_pred cccccHHHHHHHHHHcCCCeEEEe
Confidence 4478985 569999999999775
No 234
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=48.38 E-value=1.8e+02 Score=26.64 Aligned_cols=54 Identities=11% Similarity=0.167 Sum_probs=36.6
Q ss_pred HhcCCCCEEEecCCCcchHHHHHHH--cceeEEe-------------chHHHH--HHHHcCCCEEEEEcCChHH
Q 024872 162 IQKWPVPSILVPGGSSNLKYDAFSA--SRVALCT-------------SGTVAV--ELQLARLPCVVAYRAHFLT 218 (261)
Q Consensus 162 ~~~~~~~v~v~~g~~~~~~~~~~~~--aDl~i~~-------------SGt~tl--Ea~~~G~P~Vv~~~~~~~~ 218 (261)
+.+.++++.++++ .-...+|+. .|.++.- .||..+ =|-.+|+|++++-....++
T Consensus 202 L~~~GI~vtlI~D---sa~~~~M~~~~vd~VivGAd~I~~nG~v~NkiGT~~lAl~Ak~~~vPfyV~a~~~kfd 272 (344)
T PRK05720 202 LYQAGIDVTVITD---NMAAHLMQTGKIDAVIVGADRIAANGDVANKIGTYQLAIAAKYHGVPFYVAAPSSTID 272 (344)
T ss_pred HHHCCCCEEEEcc---cHHHHHhcccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEeccccccC
Confidence 4556788888764 246677763 8887763 367544 5678999999876665543
No 235
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=48.35 E-value=1.2e+02 Score=23.11 Aligned_cols=98 Identities=14% Similarity=0.082 Sum_probs=49.3
Q ss_pred cEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEe-----cCCCcchHHH
Q 024872 108 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILV-----PGGSSNLKYD 182 (261)
Q Consensus 108 ~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~-----~g~~~~~~~~ 182 (261)
++++...||.... + ..+.+++|.+. +.++-++..+ .-.+.+.... ....++... .+. ..+-.+
T Consensus 2 ~i~l~vtGs~~~~--~----~~~~l~~L~~~--g~~v~vv~S~--~A~~~~~~~~-~~~~~v~~~~~~~~~~~-~~~~~~ 69 (129)
T PF02441_consen 2 RILLGVTGSIAAY--K----APDLLRRLKRA--GWEVRVVLSP--SAERFVTPEG-LTGEPVYTDWDTWDRGD-PAEHIE 69 (129)
T ss_dssp EEEEEE-SSGGGG--G----HHHHHHHHHTT--TSEEEEEESH--HHHHHSHHHG-HCCSCEECTHCTCSTTT-TTCHHH
T ss_pred EEEEEEECHHHHH--H----HHHHHHHHhhC--CCEEEEEECC--cHHHHhhhhc-cccchhhhccccCCCCC-CcCccc
Confidence 4667777886631 1 33444566554 4454444443 2223333322 111122211 111 123345
Q ss_pred HHHHcceeEEec-----------h------HHHH-HHHHcCCCEEEEEcCChH
Q 024872 183 AFSASRVALCTS-----------G------TVAV-ELQLARLPCVVAYRAHFL 217 (261)
Q Consensus 183 ~~~~aDl~i~~S-----------G------t~tl-Ea~~~G~P~Vv~~~~~~~ 217 (261)
.-..+|++|..+ | +.++ ++...++|+|++..+++.
T Consensus 70 ~~~~~D~~vVaPaT~NtlaKiA~GiaD~l~~~~~~~~l~~~~pvvi~P~mn~~ 122 (129)
T PF02441_consen 70 LSRWADAMVVAPATANTLAKIANGIADNLLTRVALAALKEGKPVVIAPAMNPA 122 (129)
T ss_dssp HHHTESEEEEEEEEHHHHHHHHTT--SSHHHHHHHHHHHTTCGEEEEEEESHH
T ss_pred ccccCCEEEEcccCHHHHHHHHhCCcchHHHHHHHHHccCCCCeEEEEeCCHH
Confidence 577899998866 3 1333 455559999988777665
No 236
>PRK00026 trmD tRNA (guanine-N(1)-)-methyltransferase; Reviewed
Probab=48.17 E-value=1.7e+02 Score=25.51 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=36.1
Q ss_pred HHHH-HHHHcCCCEEEEEcCChHHHHHHHhcccCCccchhhhhcCCCCccccc
Q 024872 196 TVAV-ELQLARLPCVVAYRAHFLTEWFIRYKAKIPYISLPNILLDSPIIPEAL 247 (261)
Q Consensus 196 t~tl-Ea~~~G~P~Vv~~~~~~~~~~ia~~~~~~~~~~l~Nil~~~~i~pE~l 247 (261)
++++ +|.+-=+|-|+-...+...+-+...|+-.|.++-|-..-+.+| ||.|
T Consensus 145 Amv~iDav~RllPGVlg~~~S~~~eSF~~gLLeyPqYTRP~~~~g~~V-P~VL 196 (244)
T PRK00026 145 AMVLIDAVVRLLPGVLGNEESAEEDSFSDGLLEYPHYTRPAEFRGMKV-PEVL 196 (244)
T ss_pred HHHHHHHHHHcCCCccCCccccccccccCCCCCCCCCCChHhhCCCCC-cccc
Confidence 3445 9999999999866666555555556777888888888877664 4443
No 237
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=47.99 E-value=16 Score=32.10 Aligned_cols=21 Identities=43% Similarity=0.517 Sum_probs=17.5
Q ss_pred EechHH--HHHHHHcCCCEEEEE
Q 024872 192 CTSGTV--AVELQLARLPCVVAY 212 (261)
Q Consensus 192 ~~SGt~--tlEa~~~G~P~Vv~~ 212 (261)
.-|||+ ++|++.+|+|.|.+.
T Consensus 106 ~ySGTVgAA~Ea~~~GiPsiA~S 128 (261)
T PRK13931 106 LYSGTVGGAMEAALQGLPAIALS 128 (261)
T ss_pred ccchhHHHHHHHHhcCCCeEEEE
Confidence 468984 669999999999775
No 238
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=47.41 E-value=20 Score=31.18 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=18.1
Q ss_pred EEechHH--HHHHHHcCCCEEEEE
Q 024872 191 LCTSGTV--AVELQLARLPCVVAY 212 (261)
Q Consensus 191 i~~SGt~--tlEa~~~G~P~Vv~~ 212 (261)
+.-|||+ ++|++.+|+|.|.+.
T Consensus 104 v~ySGTVgAA~ea~~~GipaiA~S 127 (244)
T TIGR00087 104 VTYSGTVGAAMEAAIHGVPAIAIS 127 (244)
T ss_pred EecchhHHHHHHHHHcCCCeEEEE
Confidence 4578984 669999999999765
No 239
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.38 E-value=93 Score=27.81 Aligned_cols=54 Identities=13% Similarity=-0.107 Sum_probs=28.6
Q ss_pred CeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechH
Q 024872 141 ELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGT 196 (261)
Q Consensus 141 ~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt 196 (261)
+-++++++..+ ..-..+..++.+.+..+.+.... ..+..+..+.||++|+..|.
T Consensus 157 Gk~vvVvGrs~-~VG~Pla~lL~~~gAtVtv~hs~-t~~l~~~~~~ADIvV~AvG~ 210 (285)
T PRK14191 157 GKDVVIIGASN-IVGKPLAMLMLNAGASVSVCHIL-TKDLSFYTQNADIVCVGVGK 210 (285)
T ss_pred CCEEEEECCCc-hhHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHhCCEEEEecCC
Confidence 44566655432 22222333333334344443222 34677788888888887764
No 240
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=47.19 E-value=1.6e+02 Score=24.60 Aligned_cols=86 Identities=9% Similarity=0.061 Sum_probs=48.5
Q ss_pred cEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHc
Q 024872 108 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSAS 187 (261)
Q Consensus 108 ~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~a 187 (261)
+.++++||+.-+..+ ++.|.+ -+.++.++. +... +.++.+.+. + ++.+..+.+ -...+..+
T Consensus 10 k~vlVvGgG~va~rk---------~~~Ll~--~ga~VtVvs-p~~~--~~l~~l~~~-~-~i~~~~~~~---~~~dl~~~ 70 (205)
T TIGR01470 10 RAVLVVGGGDVALRK---------ARLLLK--AGAQLRVIA-EELE--SELTLLAEQ-G-GITWLARCF---DADILEGA 70 (205)
T ss_pred CeEEEECcCHHHHHH---------HHHHHH--CCCEEEEEc-CCCC--HHHHHHHHc-C-CEEEEeCCC---CHHHhCCc
Confidence 357888888765321 233433 245655543 3322 334554443 2 466655432 14567899
Q ss_pred ceeEEechHH-----HH-HHHHcCCCEEEEE
Q 024872 188 RVALCTSGTV-----AV-ELQLARLPCVVAY 212 (261)
Q Consensus 188 Dl~i~~SGt~-----tl-Ea~~~G~P~Vv~~ 212 (261)
|++++.+|-. .. +|-..|+|+-+++
T Consensus 71 ~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d 101 (205)
T TIGR01470 71 FLVIAATDDEELNRRVAHAARARGVPVNVVD 101 (205)
T ss_pred EEEEECCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 9999998752 22 6667888875443
No 241
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=46.59 E-value=42 Score=32.65 Aligned_cols=63 Identities=13% Similarity=0.037 Sum_probs=40.7
Q ss_pred HcceeEEechHHHH-HHHHcCCCEEEEEcCChHHHHH----HHhc-ccCCccchhhhhcCCCCcccccCCC
Q 024872 186 ASRVALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWF----IRYK-AKIPYISLPNILLDSPIIPEALLQA 250 (261)
Q Consensus 186 ~aDl~i~~SGt~tl-Ea~~~G~P~Vv~~~~~~~~~~i----a~~~-~~~~~~~l~Nil~~~~i~pE~lq~~ 250 (261)
.+|++|++.||+.+ .. ...+|+|-+ +.+.++..- ++.. -|+-.+|-+|+..+-..+-++++-+
T Consensus 54 ~~dviIsrG~ta~~i~~-~~~iPVv~i-~~s~~Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~ 122 (526)
T TIGR02329 54 RCDVVVAGGSNGAYLKS-RLSLPVIVI-KPTGFDVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLD 122 (526)
T ss_pred CCcEEEECchHHHHHHH-hCCCCEEEe-cCChhhHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCc
Confidence 47999999999888 43 568998864 666665432 2322 2455667777776655555555543
No 242
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=46.51 E-value=1.3e+02 Score=24.42 Aligned_cols=56 Identities=23% Similarity=0.187 Sum_probs=31.5
Q ss_pred cEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCC--cchHHHHHHHHhcCCCCEEE
Q 024872 108 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPN--RHVENYITGLIQKWPVPSIL 171 (261)
Q Consensus 108 ~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~--~~~~~~l~~~~~~~~~~v~v 171 (261)
..|.++||+-. .+.++.+.|.+++|+++++-...+. +...+.+-+.+++.+..+.+
T Consensus 49 ~~ifllG~~~~--------~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~ 106 (172)
T PF03808_consen 49 KRIFLLGGSEE--------VLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVF 106 (172)
T ss_pred CeEEEEeCCHH--------HHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEE
Confidence 35777876543 2445677888899999988655431 11223333344444444443
No 243
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=46.47 E-value=18 Score=31.90 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=17.9
Q ss_pred EechHH--HHHHHHcCCCEEEEEc
Q 024872 192 CTSGTV--AVELQLARLPCVVAYR 213 (261)
Q Consensus 192 ~~SGt~--tlEa~~~G~P~Vv~~~ 213 (261)
.-|||+ ++|++.+|+|.|.+.-
T Consensus 104 ~ySGTVgAA~Ea~~~GIPsIAvS~ 127 (266)
T PRK13934 104 LSSGTLGAAFQAALLGIPAVAYSA 127 (266)
T ss_pred cccHhHHHHHHHHhcCCCEEEEec
Confidence 468984 5699999999997753
No 244
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=45.90 E-value=1.4e+02 Score=23.06 Aligned_cols=50 Identities=10% Similarity=0.112 Sum_probs=28.2
Q ss_pred CeEEEEEeCCCcchHHHHHHHHhcC-CCCEEEecCCCcchHHHHHHHcceeEEechH
Q 024872 141 ELITVIHVAPNRHVENYITGLIQKW-PVPSILVPGGSSNLKYDAFSASRVALCTSGT 196 (261)
Q Consensus 141 ~~~~vi~~~~~~~~~~~l~~~~~~~-~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt 196 (261)
+++=+.++.++. +..+++.+.+ +..+.+.+ .++..+.+..+|++|+.++.
T Consensus 35 g~~~i~i~nRt~---~ra~~l~~~~~~~~~~~~~---~~~~~~~~~~~DivI~aT~~ 85 (135)
T PF01488_consen 35 GAKEITIVNRTP---ERAEALAEEFGGVNIEAIP---LEDLEEALQEADIVINATPS 85 (135)
T ss_dssp TSSEEEEEESSH---HHHHHHHHHHTGCSEEEEE---GGGHCHHHHTESEEEE-SST
T ss_pred CCCEEEEEECCH---HHHHHHHHHcCccccceee---HHHHHHHHhhCCeEEEecCC
Confidence 444344455543 2234444433 22355554 34778899999999998754
No 245
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=45.74 E-value=2.4e+02 Score=25.77 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=35.3
Q ss_pred HHhcCCCCEEEecCCCcchHHHHHHH--cceeEEec-------------hHHHH--HHHHcCCCEEEEEcCChH
Q 024872 161 LIQKWPVPSILVPGGSSNLKYDAFSA--SRVALCTS-------------GTVAV--ELQLARLPCVVAYRAHFL 217 (261)
Q Consensus 161 ~~~~~~~~v~v~~g~~~~~~~~~~~~--aDl~i~~S-------------Gt~tl--Ea~~~G~P~Vv~~~~~~~ 217 (261)
.+.+.++++.++.+ +-...+|+. .|.+|.-+ ||..+ =|-..|+|++++.+.+.+
T Consensus 191 eL~~~GI~vtlI~D---sa~~~~M~~~~Vd~VivGAd~I~aNG~v~NKiGT~~lAl~Ak~~~VPfyV~a~~~t~ 261 (329)
T PRK06371 191 ELAQEGIDHAIIAD---NAAGYFMRKKEIDLVIVGADRIASNGDFANKIGTYEKAVLAKVNGIPFYVAAPGSTF 261 (329)
T ss_pred HHHHCCCCEEEEcc---cHHHHHhhhcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEecccccc
Confidence 34556788887753 245666764 78877633 67544 567789999987664433
No 246
>KOG1713 consensus NADH-ubiquinone oxidoreductase, NDUFS3/30 kDa subunit [Energy production and conversion]
Probab=45.53 E-value=10 Score=30.89 Aligned_cols=65 Identities=15% Similarity=0.165 Sum_probs=35.2
Q ss_pred ccchhhhcCCCCeEEEE---eCCccccccCCcchHHH-HHhchhhheecCcchHHHHHHcCCCeEEEcCCCccch
Q 024872 4 AARYSHERLNGPAHFHY---VAPSFWAWKGGEARLKN-LAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDC 74 (261)
Q Consensus 4 ~~~~~~~~~~ip~~~~y---v~p~~waw~~g~~r~~~-l~~~~d~v~~~~p~e~~~~~~~g~~~~~vG~P~~d~~ 74 (261)
+-|++.+- .|++..|. +++.+|.|+.- ++-++ ..+..-..+...|.-...+..+ -+.|||++.++
T Consensus 80 svr~nsri-rVkt~tde~tpI~sv~~vfksa-d~~EREv~DM~GV~f~nHPdLrRIltdy----gfeGhPlRKDy 148 (191)
T KOG1713|consen 80 SVRYNSRI-RVKTYTDESTPIDSVVSVFKSA-DWQEREVWDMFGVTFDNHPDLRRILTDY----GFEGHPLRKDY 148 (191)
T ss_pred cccccceE-EEEEecccCccCCcceEeeecC-ChHHHHHHhhhceeccCCcchhhhcccc----cccCCcccccC
Confidence 44454443 44443333 46678999863 23333 4444444455555544444433 38899998654
No 247
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=45.46 E-value=22 Score=31.27 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=17.9
Q ss_pred EechHH--HHHHHHcCCCEEEEEc
Q 024872 192 CTSGTV--AVELQLARLPCVVAYR 213 (261)
Q Consensus 192 ~~SGt~--tlEa~~~G~P~Vv~~~ 213 (261)
.-|||+ ++|++.+|+|.|.+.-
T Consensus 110 ~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 110 LYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred ecchhHHHHHHHHHcCCCeEEEEc
Confidence 578984 5699999999997753
No 248
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=45.38 E-value=22 Score=31.11 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=18.5
Q ss_pred EEechHH--HHHHHHcCCCEEEEEc
Q 024872 191 LCTSGTV--AVELQLARLPCVVAYR 213 (261)
Q Consensus 191 i~~SGt~--tlEa~~~G~P~Vv~~~ 213 (261)
|.-|||+ ++|++..|+|.|.+.-
T Consensus 100 v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 100 VLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred eeccHHHHHHHHHHhcCCCeEEEec
Confidence 4578985 5699999999997753
No 249
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=45.38 E-value=26 Score=25.73 Aligned_cols=52 Identities=0% Similarity=-0.001 Sum_probs=30.7
Q ss_pred eEEEEEeCCCcc----hHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEec
Q 024872 142 LITVIHVAPNRH----VENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTS 194 (261)
Q Consensus 142 ~~~vi~~~~~~~----~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~S 194 (261)
.+++.+||.... .+..+++.+++++.++.+-.- ..++.......+|++++..
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~-~v~~~~~~~~~aDiiv~s~ 57 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQC-AVDEIKALTDGADIIVTST 57 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHcCCCceeeeE-EecccccCCCcccEEEEeh
Confidence 356777775432 344567777777764322100 1345677888899999654
No 250
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=44.92 E-value=1.4e+02 Score=26.76 Aligned_cols=78 Identities=8% Similarity=-0.018 Sum_probs=41.7
Q ss_pred CCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhc-CCCCEEEecCCCcchHHH
Q 024872 104 PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQK-WPVPSILVPGGSSNLKYD 182 (261)
Q Consensus 104 ~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~-~~~~v~v~~g~~~~~~~~ 182 (261)
.++..+++++|-+-.+. ..++++..+. +++=|.+-+.+.+..+.+.+.+++ .+.++... ++..+
T Consensus 114 ~~da~~l~iiGaG~QA~------~~~~a~~~v~----~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~-----~~~~e 178 (301)
T PRK06407 114 HKNVENFTIIGSGFQAE------TQLEGMASVY----NPKRIRVYSRNFDHARAFAERFSKEFGVDIRPV-----DNAEA 178 (301)
T ss_pred hcCCcEEEEECCcHHHH------HHHHHHHhcC----CCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEe-----CCHHH
Confidence 35777888885433221 2334444442 355455556543322223232332 34444443 36788
Q ss_pred HHHHcceeEEechH
Q 024872 183 AFSASRVALCTSGT 196 (261)
Q Consensus 183 ~~~~aDl~i~~SGt 196 (261)
..+.||++++..++
T Consensus 179 av~~aDIV~taT~s 192 (301)
T PRK06407 179 ALRDADTITSITNS 192 (301)
T ss_pred HHhcCCEEEEecCC
Confidence 99999999987643
No 251
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=44.70 E-value=2.2e+02 Score=26.10 Aligned_cols=54 Identities=13% Similarity=0.120 Sum_probs=36.5
Q ss_pred HhcCCCCEEEecCCCcchHHHHHHH--cceeEE------------echHHHH--HHHHcCCCEEEEEcCChHH
Q 024872 162 IQKWPVPSILVPGGSSNLKYDAFSA--SRVALC------------TSGTVAV--ELQLARLPCVVAYRAHFLT 218 (261)
Q Consensus 162 ~~~~~~~v~v~~g~~~~~~~~~~~~--aDl~i~------------~SGt~tl--Ea~~~G~P~Vv~~~~~~~~ 218 (261)
+.+.++++.++++ .-...+|+. .|.+|. +.||-.+ =|-..|+|++++-+.+.++
T Consensus 203 L~~~GI~vtlI~D---sa~~~~M~~~~Vd~VivGAd~I~anGv~NKiGT~~lA~~Ak~~~vPfyV~ap~s~~d 272 (339)
T PRK06036 203 LMQDNIPVTLITD---SMAGIVMRQGMVDKVIVGADRITRDAVFNKIGTYTHSVLAKEHEIPFYVAAPLSTFD 272 (339)
T ss_pred HHHcCCCEEEEeh---hHHHHHhccCCCCEEEECccchhhcCeehhhhHHHHHHHHHHhCCCEEEEeecCccC
Confidence 4456788887763 245667766 787776 3377554 6778999999876555443
No 252
>PLN02527 aspartate carbamoyltransferase
Probab=44.67 E-value=1.6e+02 Score=26.48 Aligned_cols=85 Identities=9% Similarity=-0.021 Sum_probs=45.4
Q ss_pred HhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCc
Q 024872 98 KNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSS 177 (261)
Q Consensus 98 r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~ 177 (261)
++++|- -+...|+++|-.+.+ +....++.++.. ..++.+.+++.+.-...+.+.+.+++.+..+.+.
T Consensus 143 ~e~~g~-l~g~kva~vGD~~~~---rv~~Sl~~~~~~----~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~----- 209 (306)
T PLN02527 143 QREIGR-LDGIKVGLVGDLANG---RTVRSLAYLLAK----YEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEES----- 209 (306)
T ss_pred HHHhCC-cCCCEEEEECCCCCC---hhHHHHHHHHHh----cCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEE-----
Confidence 345552 244568888653211 112234444333 3467777776543212222333444444445443
Q ss_pred chHHHHHHHcceeEEech
Q 024872 178 NLKYDAFSASRVALCTSG 195 (261)
Q Consensus 178 ~~~~~~~~~aDl~i~~SG 195 (261)
+++.+.++.||++.+..+
T Consensus 210 ~d~~~a~~~aDvvyt~~~ 227 (306)
T PLN02527 210 SDLMEVASKCDVLYQTRI 227 (306)
T ss_pred cCHHHHhCCCCEEEECCc
Confidence 378899999999999653
No 253
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=44.48 E-value=2.7e+02 Score=26.06 Aligned_cols=36 Identities=8% Similarity=-0.033 Sum_probs=23.2
Q ss_pred hHHHHHHH--cceeEEec-hH----HHHHHHHcCCCEEEEEcC
Q 024872 179 LKYDAFSA--SRVALCTS-GT----VAVELQLARLPCVVAYRA 214 (261)
Q Consensus 179 ~~~~~~~~--aDl~i~~S-Gt----~tlEa~~~G~P~Vv~~~~ 214 (261)
.+-++... +|++|+.. |. -|++|.-.|+..-+..|-
T Consensus 84 ~l~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLANKE 126 (389)
T TIGR00243 84 GICEMAALEDVDQVMNAIVGAAGLLPTLAAIRAGKTIALANKE 126 (389)
T ss_pred HHHHHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEechh
Confidence 34444442 48877644 54 467899999997776553
No 254
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=43.49 E-value=2.4e+02 Score=29.99 Aligned_cols=34 Identities=18% Similarity=-0.014 Sum_probs=26.4
Q ss_pred chHHHHHHHcceeEEechH-----HHHHHHHcCCCEEEE
Q 024872 178 NLKYDAFSASRVALCTSGT-----VAVELQLARLPCVVA 211 (261)
Q Consensus 178 ~~~~~~~~~aDl~i~~SGt-----~tlEa~~~G~P~Vv~ 211 (261)
+++.++++.+|+||+...+ ++..|+..|++++..
T Consensus 640 e~L~~~v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~e 678 (1042)
T PLN02819 640 ESLLKYVSQVDVVISLLPASCHAVVAKACIELKKHLVTA 678 (1042)
T ss_pred HHHHHhhcCCCEEEECCCchhhHHHHHHHHHcCCCEEEC
Confidence 4677777889999998864 455888999998754
No 255
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=43.49 E-value=2.3e+02 Score=26.25 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=36.0
Q ss_pred HhcCCCCEEEecCCCcchHHHHHH--HcceeEEe-------------chHHHH--HHHHcCCCEEEEEcCChHH
Q 024872 162 IQKWPVPSILVPGGSSNLKYDAFS--ASRVALCT-------------SGTVAV--ELQLARLPCVVAYRAHFLT 218 (261)
Q Consensus 162 ~~~~~~~v~v~~g~~~~~~~~~~~--~aDl~i~~-------------SGt~tl--Ea~~~G~P~Vv~~~~~~~~ 218 (261)
+.+.++++.++++ .-...+|+ ..|.+|.- .||-.+ =|-..|+|++++-+.+.++
T Consensus 215 L~~~GI~vtlI~D---sav~~~M~~~~Vd~VivGAd~I~~nG~v~NKiGTy~lA~~Ak~~~vPfyV~Ap~~t~d 285 (356)
T PRK08334 215 YHYDGIPLKLISD---NMAGFVMQQGKVDAIIVGADRIVANGDFANKIGTYTLAVLAKEHGIPFFTVAPLSTID 285 (356)
T ss_pred HHHCCCCEEEEeh---hHHHHHhhhcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHhCCCEEEEcccCccC
Confidence 4556788888764 24556776 57887763 377554 5677899999876554443
No 256
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=42.51 E-value=1.5e+02 Score=27.81 Aligned_cols=99 Identities=13% Similarity=0.069 Sum_probs=48.3
Q ss_pred CcEEEEEcCCcHHHHHhhHH-HHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcC-CCCEEEecCCC-cchHHHH
Q 024872 107 ATVISLLPGSRLQEVARMLP-IFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKW-PVPSILVPGGS-SNLKYDA 183 (261)
Q Consensus 107 ~~vIlll~GSR~~ei~~~~~-~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~-~~~v~v~~g~~-~~~~~~~ 183 (261)
..+|.+.-||.... ..+-+ .+.+.+..+... ++..|+|..-+.... . +.+...+. +.++... +-. +.++---
T Consensus 277 ~~vvyvSfGS~~~~-~~lp~~~~~~l~~~l~~~-~~~~FiW~~~~~~~~-~-~~~~~~~~~~~nV~~~-~W~PQ~~lll~ 351 (496)
T KOG1192|consen 277 HSVVYISFGSMVNS-ADLPEEQKKELAKALESL-QGVTFLWKYRPDDSI-Y-FPEGLPNRGRGNVVLS-KWAPQNDLLLD 351 (496)
T ss_pred CCeEEEECCccccc-ccCCHHHHHHHHHHHHhC-CCceEEEEecCCcch-h-hhhcCCCCCcCceEEe-cCCCcHHHhcC
Confidence 36788877888620 01111 122222233333 678899988653221 1 11111110 1134331 110 1121111
Q ss_pred HHHcceeEEechH-HHHHHHHcCCCEEE
Q 024872 184 FSASRVALCTSGT-VAVELQLARLPCVV 210 (261)
Q Consensus 184 ~~~aDl~i~~SGt-~tlEa~~~G~P~Vv 210 (261)
=++-.++||=.|- +|+|++.+|+|||.
T Consensus 352 H~~v~~FvTHgG~nSt~E~~~~GvP~v~ 379 (496)
T KOG1192|consen 352 HPAVGGFVTHGGWNSTLESIYSGVPMVC 379 (496)
T ss_pred CCcCcEEEECCcccHHHHHHhcCCceec
Confidence 2234588888886 55699999999984
No 257
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=42.13 E-value=1.4e+02 Score=22.21 Aligned_cols=27 Identities=19% Similarity=0.033 Sum_probs=16.6
Q ss_pred HcceeEEechHH----HH-H-HHHcCCCEEEEE
Q 024872 186 ASRVALCTSGTV----AV-E-LQLARLPCVVAY 212 (261)
Q Consensus 186 ~aDl~i~~SGt~----tl-E-a~~~G~P~Vv~~ 212 (261)
.+|++++.+=.. .+ | +.-.|+|+.++.
T Consensus 50 ~~DvIll~PQi~~~~~~i~~~~~~~~ipv~~I~ 82 (104)
T PRK09590 50 EYDLYLVSPQTKMYFKQFEEAGAKVGKPVVQIP 82 (104)
T ss_pred CCCEEEEChHHHHHHHHHHHHhhhcCCCEEEeC
Confidence 367777766432 23 2 335799998874
No 258
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=41.64 E-value=23 Score=31.04 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=17.9
Q ss_pred EechHH--HHHHHHcCCCEEEEEc
Q 024872 192 CTSGTV--AVELQLARLPCVVAYR 213 (261)
Q Consensus 192 ~~SGt~--tlEa~~~G~P~Vv~~~ 213 (261)
.-|||+ ++|++.+|+|.|.+.-
T Consensus 106 ~ySGTVgAA~ea~~~GiPsiA~S~ 129 (253)
T PRK13933 106 LYSGTVSAAIEGAIYKVPSIAVSA 129 (253)
T ss_pred ccchhHHHHHHHHHcCCCeEEEEe
Confidence 578984 5699999999997653
No 259
>PRK12743 oxidoreductase; Provisional
Probab=41.44 E-value=2.2e+02 Score=24.02 Aligned_cols=78 Identities=10% Similarity=-0.001 Sum_probs=36.8
Q ss_pred cEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCC--cchHHHHHH
Q 024872 108 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGS--SNLKYDAFS 185 (261)
Q Consensus 108 ~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~--~~~~~~~~~ 185 (261)
+++++.|||.+ +.. ..++.+.+ .+.++++....+....+.+...++..+.++.++...+ .+++..++.
T Consensus 3 k~vlItGas~g--iG~------~~a~~l~~--~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 72 (256)
T PRK12743 3 QVAIVTASDSG--IGK------ACALLLAQ--QGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALD 72 (256)
T ss_pred CEEEEECCCch--HHH------HHHHHHHH--CCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHH
Confidence 47888999877 432 13344444 3566666544322211222223333333344432221 122333333
Q ss_pred -------HcceeEEech
Q 024872 186 -------ASRVALCTSG 195 (261)
Q Consensus 186 -------~aDl~i~~SG 195 (261)
..|.+|..+|
T Consensus 73 ~~~~~~~~id~li~~ag 89 (256)
T PRK12743 73 KLIQRLGRIDVLVNNAG 89 (256)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 3588888776
No 260
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=41.31 E-value=1.7e+02 Score=25.34 Aligned_cols=38 Identities=32% Similarity=0.406 Sum_probs=20.0
Q ss_pred CCCcEEEEEcCCcHHHHHhhHHHHHHHHHHH-hhhCCCeEEEEEeC
Q 024872 105 SGATVISLLPGSRLQEVARMLPIFAKTVELL-KDSFPELITVIHVA 149 (261)
Q Consensus 105 ~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l-~~~~~~~~~vi~~~ 149 (261)
.++|+|+-.|+|...|+.+ |++.+ ....+++.+++.+.
T Consensus 112 tgkPvIlSTG~stl~EI~~-------Av~~~~~~~~~~l~llHC~s 150 (241)
T PF03102_consen 112 TGKPVILSTGMSTLEEIER-------AVEVLREAGNEDLVLLHCVS 150 (241)
T ss_dssp T-S-EEEE-TT--HHHHHH-------HHHHHHHHCT--EEEEEE-S
T ss_pred hCCcEEEECCCCCHHHHHH-------HHHHHHhcCCCCEEEEecCC
Confidence 5789999999998888765 33444 23345677777765
No 261
>PRK08618 ornithine cyclodeaminase; Validated
Probab=40.89 E-value=1.9e+02 Score=26.01 Aligned_cols=93 Identities=12% Similarity=0.043 Sum_probs=47.1
Q ss_pred CCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHh-cCCCCEEEecCCCcchHHH
Q 024872 104 PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQ-KWPVPSILVPGGSSNLKYD 182 (261)
Q Consensus 104 ~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~-~~~~~v~v~~g~~~~~~~~ 182 (261)
+++.+.++++|.+..+. ..+.++... .+++-+.+.+.+.+-.+.+.+.++ ..+..+... ++..+
T Consensus 124 ~~~~~~v~iiGaG~~a~------~~~~al~~~----~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~-----~~~~~ 188 (325)
T PRK08618 124 REDAKTLCLIGTGGQAK------GQLEAVLAV----RDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVV-----NSADE 188 (325)
T ss_pred CCCCcEEEEECCcHHHH------HHHHHHHhc----CCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEe-----CCHHH
Confidence 34566788886554332 122332222 345666666665332122222222 223333322 25677
Q ss_pred HHHHcceeEEechH--HHH-HHHHcCCCEEEE
Q 024872 183 AFSASRVALCTSGT--VAV-ELQLARLPCVVA 211 (261)
Q Consensus 183 ~~~~aDl~i~~SGt--~tl-Ea~~~G~P~Vv~ 211 (261)
+++.||++++.++. -.+ |..-.|+-++.+
T Consensus 189 ~~~~aDiVi~aT~s~~p~i~~~l~~G~hV~~i 220 (325)
T PRK08618 189 AIEEADIIVTVTNAKTPVFSEKLKKGVHINAV 220 (325)
T ss_pred HHhcCCEEEEccCCCCcchHHhcCCCcEEEec
Confidence 88999999987753 222 555556665433
No 262
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=40.24 E-value=56 Score=31.94 Aligned_cols=63 Identities=6% Similarity=0.037 Sum_probs=41.3
Q ss_pred HcceeEEechHHHH-HHHHcCCCEEEEEcCChHHHHH----HHhc-ccCCccchhhhhcCCCCcccccCCC
Q 024872 186 ASRVALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWF----IRYK-AKIPYISLPNILLDSPIIPEALLQA 250 (261)
Q Consensus 186 ~aDl~i~~SGt~tl-Ea~~~G~P~Vv~~~~~~~~~~i----a~~~-~~~~~~~l~Nil~~~~i~pE~lq~~ 250 (261)
.+|++|++-||+.+ .. ...+|+|-+ +.++++..- ++.. -|+-.++-+|+..+-..+.++++-+
T Consensus 64 ~~dviIsrG~ta~~i~~-~~~iPVv~i-~~s~~Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~ 132 (538)
T PRK15424 64 RCDAIIAAGSNGAYLKS-RLSVPVILI-KPSGFDVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLR 132 (538)
T ss_pred CCcEEEECchHHHHHHh-hCCCCEEEe-cCCHhHHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCc
Confidence 57999999999888 43 578998864 666666432 2322 2455666778776655555555543
No 263
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.99 E-value=1.3e+02 Score=26.81 Aligned_cols=55 Identities=11% Similarity=0.050 Sum_probs=31.7
Q ss_pred CeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechHH
Q 024872 141 ELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTV 197 (261)
Q Consensus 141 ~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~ 197 (261)
+-+++++|.+. ..-..+...+.+.+..+.+..-. ..++.+.++.||++|+..|..
T Consensus 158 Gk~vvVIGrs~-~VG~pla~lL~~~gatVtv~~s~-t~~l~~~~~~ADIVIsAvg~p 212 (286)
T PRK14175 158 GKNAVVIGRSH-IVGQPVSKLLLQKNASVTILHSR-SKDMASYLKDADVIVSAVGKP 212 (286)
T ss_pred CCEEEEECCCc-hhHHHHHHHHHHCCCeEEEEeCC-chhHHHHHhhCCEEEECCCCC
Confidence 44566665542 12233444444444445444222 346888999999999988764
No 264
>TIGR00088 trmD tRNA (guanine-N1)-methyltransferase. S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing N1-methylguanine.
Probab=39.73 E-value=2e+02 Score=24.94 Aligned_cols=53 Identities=17% Similarity=0.163 Sum_probs=38.2
Q ss_pred HHHH-HHHHcCCCEEEEEcCChHHHHHHHhcccCCccchhhhhcCCCCcccccC
Q 024872 196 TVAV-ELQLARLPCVVAYRAHFLTEWFIRYKAKIPYISLPNILLDSPIIPEALL 248 (261)
Q Consensus 196 t~tl-Ea~~~G~P~Vv~~~~~~~~~~ia~~~~~~~~~~l~Nil~~~~i~pE~lq 248 (261)
+.++ +|.+-=+|-|+-...+..++=+...++-.|.++-|....+..|=+.|+.
T Consensus 142 AmviiDav~RllPGVLg~~~S~~~eSF~~gLLe~P~YTRP~~~~g~~VPeVLlS 195 (233)
T TIGR00088 142 ALTLIDSVVRLIPGVLGKEASLIEESFANGLLDCPHYTRPYDLKGLKVPEVLLS 195 (233)
T ss_pred HHHHHHHHHHhCCCccCCccccccccccCCCCCCCCCCCccccCCCcCchhhcC
Confidence 3445 9999999999866666655555556778888899988877665444444
No 265
>PRK06046 alanine dehydrogenase; Validated
Probab=38.68 E-value=2.6e+02 Score=25.17 Aligned_cols=77 Identities=6% Similarity=0.012 Sum_probs=40.6
Q ss_pred CCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHh-cCCCCEEEecCCCcchHHH
Q 024872 104 PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQ-KWPVPSILVPGGSSNLKYD 182 (261)
Q Consensus 104 ~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~-~~~~~v~v~~g~~~~~~~~ 182 (261)
+++...++++|-+..+. ..++++... ++++.+.+.+.+.+..+.+.+.++ ..+..+... ++..+
T Consensus 126 ~~~~~~vgiiG~G~qa~------~h~~al~~~----~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~ 190 (326)
T PRK06046 126 RKDSKVVGIIGAGNQAR------TQLLALSEV----FDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVA-----EDIEE 190 (326)
T ss_pred CCCCCEEEEECCcHHHH------HHHHHHHhh----CCceEEEEECCCHHHHHHHHHHHHhhcCceEEEe-----CCHHH
Confidence 45667888885443321 233444332 467888888775432222222222 123223332 24566
Q ss_pred HHHHcceeEEechH
Q 024872 183 AFSASRVALCTSGT 196 (261)
Q Consensus 183 ~~~~aDl~i~~SGt 196 (261)
++. +|++++.+.+
T Consensus 191 ~l~-aDiVv~aTps 203 (326)
T PRK06046 191 ACD-CDILVTTTPS 203 (326)
T ss_pred Hhh-CCEEEEecCC
Confidence 676 9999987754
No 266
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=38.51 E-value=38 Score=27.89 Aligned_cols=31 Identities=16% Similarity=0.094 Sum_probs=24.4
Q ss_pred HHHHHHcceeEE-----e----chHHHH--HHHHcCCCEEEE
Q 024872 181 YDAFSASRVALC-----T----SGTVAV--ELQLARLPCVVA 211 (261)
Q Consensus 181 ~~~~~~aDl~i~-----~----SGt~tl--Ea~~~G~P~Vv~ 211 (261)
-..+..||++|+ + |||+-. =+.++|+|++-.
T Consensus 63 ~~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~AlgKPv~~~ 104 (172)
T COG3613 63 IKLIDQADIVLANLDPFRPDPDSGTAFELGYAIALGKPVYAY 104 (172)
T ss_pred HHHHhhcCEEEEecCCCCCCCCCcchHHHHHHHHcCCceEEE
Confidence 357788999887 4 899755 689999998853
No 267
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=38.44 E-value=2.7e+02 Score=26.24 Aligned_cols=34 Identities=9% Similarity=0.085 Sum_probs=25.9
Q ss_pred chHHHHHHHcceeEEechH----HHHHHHHcCCCEEEEE
Q 024872 178 NLKYDAFSASRVALCTSGT----VAVELQLARLPCVVAY 212 (261)
Q Consensus 178 ~~~~~~~~~aDl~i~~SGt----~tlEa~~~G~P~Vv~~ 212 (261)
++..+.+..||++|+.+|+ .+.| +.-+.|+++++
T Consensus 234 ~~l~~~l~~aDiVI~aT~a~~~vi~~~-~~~~~~~~~iD 271 (414)
T PRK13940 234 SELPQLIKKADIIIAAVNVLEYIVTCK-YVGDKPRVFID 271 (414)
T ss_pred HHHHHHhccCCEEEECcCCCCeeECHH-HhCCCCeEEEE
Confidence 4778999999999999976 2333 34578988876
No 268
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=37.73 E-value=3.4e+02 Score=25.19 Aligned_cols=54 Identities=7% Similarity=-0.010 Sum_probs=36.3
Q ss_pred HhcCCCCEEEecCCCcchHHHHHHH--cceeEEec-------------hHHHH--HHHHcCCCEEEEEcCChHH
Q 024872 162 IQKWPVPSILVPGGSSNLKYDAFSA--SRVALCTS-------------GTVAV--ELQLARLPCVVAYRAHFLT 218 (261)
Q Consensus 162 ~~~~~~~v~v~~g~~~~~~~~~~~~--aDl~i~~S-------------Gt~tl--Ea~~~G~P~Vv~~~~~~~~ 218 (261)
+.+.++++.++++ .-...+|+. .|.+|.-+ ||-.+ =|-.+|+|++++-+...++
T Consensus 223 L~~~GIpvtlI~D---sa~~~~m~~~~Vd~VivGAD~I~~NG~v~NKiGTy~lA~~Ak~~~vPfyV~ap~~k~d 293 (363)
T PRK05772 223 LMEEGIKVTLITD---TAVGLVMYKDMVNNVMVGADRILRDGHVFNKIGTFKEAVIAHELGIPFYALAPTSTFD 293 (363)
T ss_pred HHHCCCCEEEEeh---hHHHHHHhhcCCCEEEECccEEecCCCEeehhhhHHHHHHHHHhCCCEEEEccccccC
Confidence 4456888888763 245566753 78887733 67554 5678999999876665544
No 269
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=37.60 E-value=1.8e+02 Score=21.87 Aligned_cols=54 Identities=9% Similarity=-0.018 Sum_probs=33.1
Q ss_pred HHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechH------HHHHHHHcCCCEEEEE
Q 024872 158 ITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGT------VAVELQLARLPCVVAY 212 (261)
Q Consensus 158 l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt------~tlEa~~~G~P~Vv~~ 212 (261)
.++.+++-+..+.+. -++..+..+.+..+|+++.-+-. .--.+.-.|+|+-+++
T Consensus 21 m~~aA~~kg~~~~I~-A~s~~e~~~~~~~~DvvLlGPQv~y~~~~~~~~~~~~giPV~vI~ 80 (102)
T COG1440 21 MKKAAESKGKDVTIE-AYSETELSEYIDNADVVLLGPQVRYMLKQLKEAAEEKGIPVEVID 80 (102)
T ss_pred HHHHHHhCCCceEEE-EechhHHHHhhhcCCEEEEChHHHHHHHHHHHHhcccCCCeEEeC
Confidence 444444444444432 12245778888889988887743 3235566788998875
No 270
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=37.57 E-value=87 Score=26.49 Aligned_cols=83 Identities=11% Similarity=0.097 Sum_probs=50.8
Q ss_pred HHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechHH----HHHHH
Q 024872 127 IFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTV----AVELQ 202 (261)
Q Consensus 127 ~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~----tlEa~ 202 (261)
.-+++++++.+++|+ ++ +|.+..-..+..+.. .+.+.++.+.+++ ..++.++-...++...+ |.. ..+|.
T Consensus 45 ~a~~~i~~l~~~~~~--~~-vGAGTVl~~~~a~~a-~~aGA~FivsP~~-~~~v~~~~~~~~i~~iP-G~~TptEi~~A~ 118 (204)
T TIGR01182 45 VALDAIRLLRKEVPD--AL-IGAGTVLNPEQLRQA-VDAGAQFIVSPGL-TPELAKHAQDHGIPIIP-GVATPSEIMLAL 118 (204)
T ss_pred cHHHHHHHHHHHCCC--CE-EEEEeCCCHHHHHHH-HHcCCCEEECCCC-CHHHHHHHHHcCCcEEC-CCCCHHHHHHHH
Confidence 455667777777775 23 333332112323433 3356566666654 66788888888887765 643 33677
Q ss_pred HcCCCEEEEEcCC
Q 024872 203 LARLPCVVAYRAH 215 (261)
Q Consensus 203 ~~G~P~Vv~~~~~ 215 (261)
.+|-.+|=+++.+
T Consensus 119 ~~Ga~~vKlFPA~ 131 (204)
T TIGR01182 119 ELGITALKLFPAE 131 (204)
T ss_pred HCCCCEEEECCch
Confidence 8999999777765
No 271
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=37.38 E-value=1.5e+02 Score=25.38 Aligned_cols=88 Identities=6% Similarity=0.007 Sum_probs=46.9
Q ss_pred CCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHH
Q 024872 106 GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFS 185 (261)
Q Consensus 106 ~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~ 185 (261)
...-+|++||+.-+.- + +..|.+ -+.++.++. +.. .+.++.+... + .+.+....+ -...+.
T Consensus 24 ~~~~VLVVGGG~VA~R-K--------~~~Ll~--~gA~VtVVa-p~i--~~el~~l~~~-~-~i~~~~r~~---~~~dl~ 84 (223)
T PRK05562 24 NKIKVLIIGGGKAAFI-K--------GKTFLK--KGCYVYILS-KKF--SKEFLDLKKY-G-NLKLIKGNY---DKEFIK 84 (223)
T ss_pred CCCEEEEECCCHHHHH-H--------HHHHHh--CCCEEEEEc-CCC--CHHHHHHHhC-C-CEEEEeCCC---ChHHhC
Confidence 3445778898876532 2 122332 245655554 322 2335554432 2 355543221 234568
Q ss_pred HcceeEEechH------HHHHHHHcCCCEEEEE
Q 024872 186 ASRVALCTSGT------VAVELQLARLPCVVAY 212 (261)
Q Consensus 186 ~aDl~i~~SGt------~tlEa~~~G~P~Vv~~ 212 (261)
.++++++.++- +.-+|-..|+++.+++
T Consensus 85 g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd 117 (223)
T PRK05562 85 DKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCS 117 (223)
T ss_pred CCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcC
Confidence 89999999853 2225556688776553
No 272
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.03 E-value=1.3e+02 Score=26.78 Aligned_cols=55 Identities=9% Similarity=0.004 Sum_probs=30.9
Q ss_pred CeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechHH
Q 024872 141 ELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTV 197 (261)
Q Consensus 141 ~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~ 197 (261)
+-++++++..+ ..=..+..++.+.+..+.+.... ..++.+..+.||++|+..|+.
T Consensus 158 Gk~vvViGrs~-iVGkPla~lL~~~~atVt~~hs~-t~~l~~~~~~ADIVV~avG~~ 212 (285)
T PRK14189 158 GAHAVVIGRSN-IVGKPMAMLLLQAGATVTICHSK-TRDLAAHTRQADIVVAAVGKR 212 (285)
T ss_pred CCEEEEECCCC-ccHHHHHHHHHHCCCEEEEecCC-CCCHHHHhhhCCEEEEcCCCc
Confidence 45566665432 21222344444334344433222 357888999999999988853
No 273
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=36.83 E-value=1.7e+02 Score=23.33 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=14.0
Q ss_pred chHHHHHHHcceeEEec
Q 024872 178 NLKYDAFSASRVALCTS 194 (261)
Q Consensus 178 ~~~~~~~~~aDl~i~~S 194 (261)
+++.+.++.||++.+.+
T Consensus 65 ~~~~e~l~~aDvvy~~~ 81 (158)
T PF00185_consen 65 DDIEEALKGADVVYTDR 81 (158)
T ss_dssp SSHHHHHTT-SEEEEES
T ss_pred eCHHHhcCCCCEEEEcC
Confidence 37899999999999976
No 274
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=36.81 E-value=2.9e+02 Score=24.18 Aligned_cols=86 Identities=10% Similarity=0.039 Sum_probs=50.9
Q ss_pred cEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHc
Q 024872 108 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSAS 187 (261)
Q Consensus 108 ~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~a 187 (261)
..|.++|-++... .+.+ .+.+..++++++.+++.+.+ ..+....+++.. .+. .+..++++.+
T Consensus 7 irIGIIG~G~IG~------~~a~---~L~~~~~~~el~aV~dr~~~---~a~~~a~~~g~~-~~~-----~~~eell~~~ 68 (271)
T PRK13302 7 LRVAIAGLGAIGK------AIAQ---ALDRGLPGLTLSAVAVRDPQ---RHADFIWGLRRP-PPV-----VPLDQLATHA 68 (271)
T ss_pred eEEEEECccHHHH------HHHH---HHHhcCCCeEEEEEECCCHH---HHHHHHHhcCCC-ccc-----CCHHHHhcCC
Confidence 3588887666432 1222 23322367888878776432 233444444321 112 2466777889
Q ss_pred ceeEEechHH-----HHHHHHcCCCEEEE
Q 024872 188 RVALCTSGTV-----AVELQLARLPCVVA 211 (261)
Q Consensus 188 Dl~i~~SGt~-----tlEa~~~G~P~Vv~ 211 (261)
|+++-.+++. +.+++..|+++++.
T Consensus 69 D~Vvi~tp~~~h~e~~~~aL~aGk~Vi~~ 97 (271)
T PRK13302 69 DIVVEAAPASVLRAIVEPVLAAGKKAIVL 97 (271)
T ss_pred CEEEECCCcHHHHHHHHHHHHcCCcEEEe
Confidence 9999998763 34777889998864
No 275
>PRK06141 ornithine cyclodeaminase; Validated
Probab=36.63 E-value=3e+02 Score=24.64 Aligned_cols=17 Identities=12% Similarity=0.065 Sum_probs=13.9
Q ss_pred hHHHHHHHcceeEEech
Q 024872 179 LKYDAFSASRVALCTSG 195 (261)
Q Consensus 179 ~~~~~~~~aDl~i~~SG 195 (261)
+..+..+.||++++.++
T Consensus 182 ~~~~av~~aDIVi~aT~ 198 (314)
T PRK06141 182 DLEAAVRQADIISCATL 198 (314)
T ss_pred CHHHHHhcCCEEEEeeC
Confidence 56778899999988764
No 276
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=35.86 E-value=2.7e+02 Score=23.49 Aligned_cols=30 Identities=10% Similarity=-0.013 Sum_probs=20.9
Q ss_pred HHHHHHHcceeEEechH-HHH----HHHHcCC-CEE
Q 024872 180 KYDAFSASRVALCTSGT-VAV----ELQLARL-PCV 209 (261)
Q Consensus 180 ~~~~~~~aDl~i~~SGt-~tl----Ea~~~G~-P~V 209 (261)
...+...||.+|+-+|. .|+ |++..+. |..
T Consensus 104 k~~~~~~ada~V~~pGG~GTleEl~e~lt~~q~g~~ 139 (205)
T COG1611 104 KRAMVRSADAFIVLPGGFGTLEELFEALTLGQTGVH 139 (205)
T ss_pred HHHHHHhCCEEEEeCCCcchHHHHHHHHHHhhCCcc
Confidence 45678899999999964 344 5666665 544
No 277
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=35.67 E-value=33 Score=30.06 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=17.8
Q ss_pred EechHH--HHHHHHcCCCEEEEEc
Q 024872 192 CTSGTV--AVELQLARLPCVVAYR 213 (261)
Q Consensus 192 ~~SGt~--tlEa~~~G~P~Vv~~~ 213 (261)
.-|||+ ++|++..|+|.|.+.-
T Consensus 105 ~ySGTVgAA~ea~~~GiPaiA~S~ 128 (253)
T PRK13935 105 LYSGTVSGALEGAMMGVPSIAISS 128 (253)
T ss_pred cccHhHHHHHHHHhcCCCeEEEEc
Confidence 468984 5699999999997753
No 278
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.66 E-value=1.7e+02 Score=26.16 Aligned_cols=54 Identities=9% Similarity=-0.058 Sum_probs=29.4
Q ss_pred CeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechH
Q 024872 141 ELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGT 196 (261)
Q Consensus 141 ~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt 196 (261)
+-++++++..+ ..=..+..++.+.+..+.+.... ..++.+..+.||++|+..|-
T Consensus 157 Gk~vvViGrS~-~VG~Pla~lL~~~~AtVti~hs~-T~~l~~~~~~ADIvV~AvGk 210 (281)
T PRK14183 157 GKDVCVVGASN-IVGKPMAALLLNANATVDICHIF-TKDLKAHTKKADIVIVGVGK 210 (281)
T ss_pred CCEEEEECCCC-cchHHHHHHHHHCCCEEEEeCCC-CcCHHHHHhhCCEEEEecCc
Confidence 44666665432 22222333343333334433222 45778889999999988775
No 279
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=35.26 E-value=2.1e+02 Score=24.65 Aligned_cols=96 Identities=13% Similarity=0.056 Sum_probs=48.2
Q ss_pred EEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCC-cchH---HHHHHHHhcCCCCEEEecCCCcchHHHHHHH
Q 024872 111 SLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPN-RHVE---NYITGLIQKWPVPSILVPGGSSNLKYDAFSA 186 (261)
Q Consensus 111 lll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~-~~~~---~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~ 186 (261)
|++-.|+... ...++.....++.+....+.+ ..++++.. .+.+ +..++.++.++..+..+.. .++..+.+..
T Consensus 4 ll~s~~~~~~-~~~l~~~~~~~~~~~~~~~~v-~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~--~~d~~~~l~~ 79 (233)
T PRK05282 4 LLLSNSTLPG-TGYLEHALPLIAELLAGRRKA-VFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHR--VADPVAAIEN 79 (233)
T ss_pred EEEecCCCCC-CchHHHHHHHHHHHHcCCCeE-EEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEecc--chhhHHHHhc
Confidence 3444555532 122333344444443333433 34455532 2222 2334455566665544432 2456788999
Q ss_pred cceeEEechH--------------HHH-HHHHcCCCEEE
Q 024872 187 SRVALCTSGT--------------VAV-ELQLARLPCVV 210 (261)
Q Consensus 187 aDl~i~~SGt--------------~tl-Ea~~~G~P~Vv 210 (261)
||++...-|- ..| |+...|+|.+=
T Consensus 80 ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G 118 (233)
T PRK05282 80 AEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIG 118 (233)
T ss_pred CCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEE
Confidence 9976655541 224 77778888653
No 280
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=34.94 E-value=94 Score=27.68 Aligned_cols=53 Identities=8% Similarity=0.073 Sum_probs=26.0
Q ss_pred EEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchH-HHHHHHcceeEEechHHHH
Q 024872 145 VIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLK-YDAFSASRVALCTSGTVAV 199 (261)
Q Consensus 145 vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~-~~~~~~aDl~i~~SGt~tl 199 (261)
+++||++...-..|-+..++.+.+...+.. .+++ .+++..++-+=..||++|=
T Consensus 214 iVIGg~~SsNT~kL~eia~~~~~~t~~Ie~--~~el~~~~l~~~~~VGItaGASTP 267 (281)
T PF02401_consen 214 IVIGGKNSSNTRKLAEIAKEHGKPTYHIET--ADELDPEWLKGVKKVGITAGASTP 267 (281)
T ss_dssp EEES-TT-HHHHHHHHHHHHCTTCEEEESS--GGG--HHHHTT-SEEEEEE-TTS-
T ss_pred EEecCCCCccHHHHHHHHHHhCCCEEEeCC--ccccCHhHhCCCCEEEEEccCCCC
Confidence 344444332223455566666555544543 2343 6788888766667787653
No 281
>PF13941 MutL: MutL protein
Probab=34.93 E-value=1.6e+02 Score=28.21 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=35.6
Q ss_pred HHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCC
Q 024872 95 EDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWP 166 (261)
Q Consensus 95 ~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~ 166 (261)
.++++-..+++| +||+.||--+.+ -..+++.++.|.+..-++- |+..| |...++.+++.+.+.+
T Consensus 115 ~~l~~i~~~~PD--iILLaGGtDgG~----~~~il~nA~~La~~~~~~p-VIyAG-N~~a~~~v~~il~~~~ 178 (457)
T PF13941_consen 115 EDLEEIREIRPD--IILLAGGTDGGN----KEVILHNAEMLAEANLRIP-VIYAG-NKAAQDEVEEILEKAG 178 (457)
T ss_pred HHHHHHhccCCC--EEEEeCCccCCc----hHHHHHHHHHHHhCCCCCc-EEEEC-CHHHHHHHHHHHHhCC
Confidence 444444455555 678787766533 2356666777765422333 33334 5556666777776433
No 282
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=34.85 E-value=23 Score=28.83 Aligned_cols=61 Identities=23% Similarity=0.289 Sum_probs=30.9
Q ss_pred HHcceeEEechHHHH-HHHHcCCCEEEEEcCChHHHHHH--Hhcc---cCCccchhhhhcCCCCccccc
Q 024872 185 SASRVALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFI--RYKA---KIPYISLPNILLDSPIIPEAL 247 (261)
Q Consensus 185 ~~aDl~i~~SGt~tl-Ea~~~G~P~Vv~~~~~~~~~~ia--~~~~---~~~~~~l~Nil~~~~i~pE~l 247 (261)
..+|++|++.||+.+ .-.. ++|+|-+ +.+.++..-+ +..- |+-.++-+|.+.+-+-+.++|
T Consensus 33 ~g~dViIsRG~ta~~lr~~~-~iPVV~I-~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll 99 (176)
T PF06506_consen 33 EGADVIISRGGTAELLRKHV-SIPVVEI-PISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELL 99 (176)
T ss_dssp TT-SEEEEEHHHHHHHHCC--SS-EEEE----HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHH
T ss_pred cCCeEEEECCHHHHHHHHhC-CCCEEEE-CCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHh
Confidence 458999999999876 5444 9998854 6666664333 2111 233444466654433344443
No 283
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=34.31 E-value=71 Score=21.98 Aligned_cols=25 Identities=12% Similarity=0.048 Sum_probs=16.1
Q ss_pred HHcceeEEechHHHHHHHHcCCCEEEEEcC
Q 024872 185 SASRVALCTSGTVAVELQLARLPCVVAYRA 214 (261)
Q Consensus 185 ~~aDl~i~~SGt~tlEa~~~G~P~Vv~~~~ 214 (261)
...|++++..-.. ..+.|+|.+.+.
T Consensus 45 ~~~DlIitT~~l~-----~~~~pvi~i~~~ 69 (85)
T cd05568 45 DDYDLIISTVPLE-----DTDKPVIVVSPI 69 (85)
T ss_pred cCCCEEEEccccC-----CCCCCEEEECCC
Confidence 3578888876322 467898866443
No 284
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=34.10 E-value=1e+02 Score=22.42 Aligned_cols=64 Identities=14% Similarity=0.125 Sum_probs=31.0
Q ss_pred EEEEEeCCCcc---h-HHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechHHHHHHHHcCCCEEE
Q 024872 143 ITVIHVAPNRH---V-ENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVV 210 (261)
Q Consensus 143 ~~vi~~~~~~~---~-~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~tlEa~~~G~P~Vv 210 (261)
+++++||.... + ...+++.+++.+.++.+.... ..++......+|++++.+-.. + ..-++|++-
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~-~~e~~~~~~~~D~iv~t~~~~--~-~~~~ip~~~ 71 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCR-VNEIETYMDGVHLICTTARVD--R-SFGDIPLVH 71 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEec-HHHHhhhcCCCCEEEECCccc--c-ccCCCCEEE
Confidence 45666654321 1 233455555555555443211 224444556679888776321 2 111578653
No 285
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=34.04 E-value=45 Score=27.51 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=22.5
Q ss_pred CcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeC
Q 024872 107 ATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVA 149 (261)
Q Consensus 107 ~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~ 149 (261)
+-.-.+.||..|.+. ...+++.+|.+++|++++.++..
T Consensus 42 G~~~fi~GgalG~D~-----waae~vl~LK~~yp~ikL~~v~P 79 (177)
T PF06908_consen 42 GVRWFITGGALGVDL-----WAAEVVLELKKEYPEIKLALVLP 79 (177)
T ss_dssp T--EEEE---TTHHH-----HHHHHHHTTTTT-TT-EEEEEES
T ss_pred CCCEEEECCcccHHH-----HHHHHHHHHHhhhhheEEEEEEc
Confidence 345666888888653 35667778888899999887775
No 286
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=33.99 E-value=3.7e+02 Score=24.51 Aligned_cols=83 Identities=7% Similarity=-0.073 Sum_probs=43.7
Q ss_pred HhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchH----HHHHHHHhcCCCCEEEec
Q 024872 98 KNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVE----NYITGLIQKWPVPSILVP 173 (261)
Q Consensus 98 r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~----~~l~~~~~~~~~~v~v~~ 173 (261)
++++|-+-++..|+++|..+.. + ...++.++..+ ++.+.+++.+..... +..++..+..+..+.+.
T Consensus 147 ~e~~g~~l~gl~ia~vGD~~~~-v---~~Sl~~~~~~~-----g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~- 216 (334)
T PRK01713 147 IENCDKPLSEISYVYIGDARNN-M---GNSLLLIGAKL-----GMDVRICAPKALLPEASLVEMCEKFAKESGARITVT- 216 (334)
T ss_pred HHHcCCCcCCcEEEEECCCccC-H---HHHHHHHHHHc-----CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEE-
Confidence 4445422244578888653221 1 22344444433 577776665421111 11233334445455543
Q ss_pred CCCcchHHHHHHHcceeEEec
Q 024872 174 GGSSNLKYDAFSASRVALCTS 194 (261)
Q Consensus 174 g~~~~~~~~~~~~aDl~i~~S 194 (261)
+++.+++..||++.+.+
T Consensus 217 ----~d~~~a~~~aDvVyt~~ 233 (334)
T PRK01713 217 ----DDIDKAVKGVDFVHTDV 233 (334)
T ss_pred ----cCHHHHhCCCCEEEEcc
Confidence 37889999999999954
No 287
>PLN00203 glutamyl-tRNA reductase
Probab=33.93 E-value=4.5e+02 Score=25.57 Aligned_cols=35 Identities=9% Similarity=-0.015 Sum_probs=24.0
Q ss_pred chHHHHHHHcceeEEechH-------HHHHHHHc-----CCCEEEEE
Q 024872 178 NLKYDAFSASRVALCTSGT-------VAVELQLA-----RLPCVVAY 212 (261)
Q Consensus 178 ~~~~~~~~~aDl~i~~SGt-------~tlEa~~~-----G~P~Vv~~ 212 (261)
++..+.+..||++|+.+|. ..+|.+.. |.|+++++
T Consensus 321 ~dl~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~ID 367 (519)
T PLN00203 321 DEMLACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVD 367 (519)
T ss_pred hhHHHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEE
Confidence 4677889999999998753 23333321 57888876
No 288
>PRK07340 ornithine cyclodeaminase; Validated
Probab=33.33 E-value=3e+02 Score=24.56 Aligned_cols=17 Identities=6% Similarity=-0.138 Sum_probs=14.0
Q ss_pred hHHHHHHHcceeEEech
Q 024872 179 LKYDAFSASRVALCTSG 195 (261)
Q Consensus 179 ~~~~~~~~aDl~i~~SG 195 (261)
+..++++.||++++.+.
T Consensus 181 ~~~~av~~aDiVitaT~ 197 (304)
T PRK07340 181 DGEAIPEAVDLVVTATT 197 (304)
T ss_pred CHHHHhhcCCEEEEccC
Confidence 56778899999998764
No 289
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=33.30 E-value=3.2e+02 Score=25.00 Aligned_cols=82 Identities=2% Similarity=-0.104 Sum_probs=42.8
Q ss_pred HhhcCC--CCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcch----HHHHHHHHhcCCCCEEE
Q 024872 98 KNKYSV--PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHV----ENYITGLIQKWPVPSIL 171 (261)
Q Consensus 98 r~~l~l--~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~----~~~l~~~~~~~~~~v~v 171 (261)
++++|. +-+...|+++|-. ++....++.++.++ ++.+.+++.+.... .+.+++..+..+..+.+
T Consensus 143 ~e~~g~g~~l~glkv~~vGD~-----~~v~~Sl~~~~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~ 212 (338)
T PRK02255 143 IEHLPEGKKLEDCKVVFVGDA-----TQVCVSLMFIATKM-----GMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLV 212 (338)
T ss_pred HHHhCCCCCCCCCEEEEECCC-----chHHHHHHHHHHhC-----CCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEE
Confidence 455541 2344568877542 12222344444332 57777776543211 12222223334444444
Q ss_pred ecCCCcchHHHHHHHcceeEEec
Q 024872 172 VPGGSSNLKYDAFSASRVALCTS 194 (261)
Q Consensus 172 ~~g~~~~~~~~~~~~aDl~i~~S 194 (261)
. +++.+++..||++.+..
T Consensus 213 ~-----~d~~eav~~aDvvy~~~ 230 (338)
T PRK02255 213 T-----DDVDEAVKDADFVYTDV 230 (338)
T ss_pred E-----cCHHHHhCCCCEEEEcc
Confidence 3 37889999999999954
No 290
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=33.26 E-value=1.3e+02 Score=28.76 Aligned_cols=114 Identities=9% Similarity=0.036 Sum_probs=59.4
Q ss_pred cHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEec
Q 024872 94 SEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVP 173 (261)
Q Consensus 94 ~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~ 173 (261)
+.++++-.++++| +||+.||--+.+- ..+++-++.|.+..-+.-+|+ .| |.+.++.+++.+.+.+..+.+.+
T Consensus 110 ~~~l~~I~~~~PD--IILLaGGtDGG~~----e~~l~NA~~La~~~~~~pIIy-AG-N~~a~~~V~~il~~~~~~~~i~e 181 (463)
T TIGR01319 110 NKDIEAIEESNLD--IILFAGGTDGGEE----ECGIHNAKMLAEHGLDCAIIV-AG-NKDIQDEVQEIFDHADIFYRITD 181 (463)
T ss_pred HHHHHHHhhcCCC--EEEEeCCcCCCch----HHHHHHHHHHHhcCCCCcEEE-eC-CHHHHHHHHHHHhcCCceEEecC
Confidence 4455555566665 6888888666532 245555666655322333333 33 55556667777764332211110
Q ss_pred ----C------C-Cc--------------chHHHHHHHcceeEEec-hHH--HHHHHHcCC-------CEEEEEcCC
Q 024872 174 ----G------G-SS--------------NLKYDAFSASRVALCTS-GTV--AVELQLARL-------PCVVAYRAH 215 (261)
Q Consensus 174 ----g------~-~~--------------~~~~~~~~~aDl~i~~S-Gt~--tlEa~~~G~-------P~Vv~~~~~ 215 (261)
. + .+ ..+..+...++-.+.++ |++ ..|..+-|+ +.++++-++
T Consensus 182 NV~P~i~~ln~epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~VDIGG 258 (463)
T TIGR01319 182 NVLPDLDHLNPEAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFILIDIGG 258 (463)
T ss_pred CcCCCCCCcCchHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEEEEcCc
Confidence 0 0 01 12444555566666554 554 338888876 567766554
No 291
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=33.19 E-value=3.3e+02 Score=24.46 Aligned_cols=77 Identities=8% Similarity=0.091 Sum_probs=38.6
Q ss_pred CCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHh-cCCCCEEEecCCCcchHHHH
Q 024872 105 SGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQ-KWPVPSILVPGGSSNLKYDA 183 (261)
Q Consensus 105 ~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~-~~~~~v~v~~g~~~~~~~~~ 183 (261)
++...++++|-+..+. ..+.++... .+++-+.+.+.+.+-.+.+.+.+. .++.++... ++..+.
T Consensus 127 ~~~~~v~iiGaG~qA~------~~~~al~~~----~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~-----~~~~~a 191 (326)
T TIGR02992 127 EDSSVVAIFGAGMQAR------LQLEALTLV----RDIRSARIWARDSAKAEALALQLSSLLGIDVTAA-----TDPRAA 191 (326)
T ss_pred CCCcEEEEECCCHHHH------HHHHHHHHh----CCccEEEEECCCHHHHHHHHHHHHhhcCceEEEe-----CCHHHH
Confidence 4555677775433221 233333322 245556666654321122222222 223333222 367788
Q ss_pred HHHcceeEEechH
Q 024872 184 FSASRVALCTSGT 196 (261)
Q Consensus 184 ~~~aDl~i~~SGt 196 (261)
++.||++++.+++
T Consensus 192 v~~aDiVvtaT~s 204 (326)
T TIGR02992 192 MSGADIIVTTTPS 204 (326)
T ss_pred hccCCEEEEecCC
Confidence 8999999998754
No 292
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=33.04 E-value=2.8e+02 Score=22.95 Aligned_cols=78 Identities=13% Similarity=0.087 Sum_probs=36.5
Q ss_pred cEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCC--cchHHHHHH
Q 024872 108 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGS--SNLKYDAFS 185 (261)
Q Consensus 108 ~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~--~~~~~~~~~ 185 (261)
+++++.||+.+ +.. ..++.+.++ +.++++..+.+....+.+.+.+++.+..+.++.... .+++..+++
T Consensus 5 ~~vlItGa~g~--iG~------~~a~~l~~~--g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (250)
T PRK08063 5 KVALVTGSSRG--IGK------AIALRLAEE--GYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFA 74 (250)
T ss_pred CEEEEeCCCch--HHH------HHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 46888988876 332 123344442 556655444332211112222333332333332221 234445554
Q ss_pred H-------cceeEEech
Q 024872 186 A-------SRVALCTSG 195 (261)
Q Consensus 186 ~-------aDl~i~~SG 195 (261)
. .|++|..+|
T Consensus 75 ~~~~~~~~id~vi~~ag 91 (250)
T PRK08063 75 QIDEEFGRLDVFVNNAA 91 (250)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 3 588888765
No 293
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=32.92 E-value=37 Score=33.08 Aligned_cols=24 Identities=42% Similarity=0.775 Sum_probs=19.6
Q ss_pred eeEEechH-------HHHHHHHcCCCEEEEE
Q 024872 189 VALCTSGT-------VAVELQLARLPCVVAY 212 (261)
Q Consensus 189 l~i~~SGt-------~tlEa~~~G~P~Vv~~ 212 (261)
++||.||| +.+||-..|+|.||..
T Consensus 74 avi~TSGTA~ANl~PAViEA~~srvpLIVLT 104 (566)
T COG1165 74 AVICTSGTAVANLYPAVIEANLSRVPLIVLT 104 (566)
T ss_pred EEEEcCcchhhhccHHHHhhhhcCCceEEEe
Confidence 46778888 4569999999999874
No 294
>PRK06114 short chain dehydrogenase; Provisional
Probab=32.75 E-value=3e+02 Score=23.10 Aligned_cols=32 Identities=6% Similarity=-0.053 Sum_probs=18.8
Q ss_pred CcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEe
Q 024872 107 ATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHV 148 (261)
Q Consensus 107 ~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~ 148 (261)
.+++++.|||++ +.. ..++.|.+ .+.++++..
T Consensus 8 ~k~~lVtG~s~g--IG~------~ia~~l~~--~G~~v~~~~ 39 (254)
T PRK06114 8 GQVAFVTGAGSG--IGQ------RIAIGLAQ--AGADVALFD 39 (254)
T ss_pred CCEEEEECCCch--HHH------HHHHHHHH--CCCEEEEEe
Confidence 457889999887 433 12334444 356666554
No 295
>PRK09134 short chain dehydrogenase; Provisional
Probab=32.39 E-value=3e+02 Score=23.07 Aligned_cols=12 Identities=8% Similarity=0.011 Sum_probs=9.4
Q ss_pred CcEEEEEcCCcH
Q 024872 107 ATVISLLPGSRL 118 (261)
Q Consensus 107 ~~vIlll~GSR~ 118 (261)
.+++++.|||.+
T Consensus 9 ~k~vlItGas~g 20 (258)
T PRK09134 9 PRAALVTGAARR 20 (258)
T ss_pred CCEEEEeCCCcH
Confidence 457888998876
No 296
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=32.36 E-value=3.9e+02 Score=24.27 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=50.3
Q ss_pred EEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEec--CCCcc-h------
Q 024872 109 VISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVP--GGSSN-L------ 179 (261)
Q Consensus 109 vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~--g~~~~-~------ 179 (261)
.|++.+|+-|..+ .| -+..+++|.+ ++.++.+++... .++. +.+.+.+.....++ +.... .
T Consensus 3 ~i~~~~GGTGGHi---~P-ala~a~~l~~--~g~~v~~vg~~~-~~e~---~l~~~~g~~~~~~~~~~l~~~~~~~~~~~ 72 (352)
T PRK12446 3 KIVFTGGGSAGHV---TP-NLAIIPYLKE--DNWDISYIGSHQ-GIEK---TIIEKENIPYYSISSGKLRRYFDLKNIKD 72 (352)
T ss_pred eEEEEcCCcHHHH---HH-HHHHHHHHHh--CCCEEEEEECCC-cccc---ccCcccCCcEEEEeccCcCCCchHHHHHH
Confidence 3667777777543 34 4445566664 478888887643 2221 23333333332221 11000 1
Q ss_pred ----HHHHHH--------HcceeEEechHH----HHHHHHcCCCEEEE
Q 024872 180 ----KYDAFS--------ASRVALCTSGTV----AVELQLARLPCVVA 211 (261)
Q Consensus 180 ----~~~~~~--------~aDl~i~~SGt~----tlEa~~~G~P~Vv~ 211 (261)
+...++ .-|++++.-|-+ .+-+..+|+|+++.
T Consensus 73 ~~~~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 73 PFLVMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 111111 258899877655 55999999999874
No 297
>PTZ00357 methyltransferase; Provisional
Probab=32.19 E-value=1.4e+02 Score=30.43 Aligned_cols=38 Identities=18% Similarity=0.105 Sum_probs=22.8
Q ss_pred cEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcc
Q 024872 108 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRH 153 (261)
Q Consensus 108 ~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~ 153 (261)
-+|+++|++||.-+. ..++|++.+. -+++ |++..+|.+
T Consensus 702 vVImVVGAGRGPLVd----raLrAak~~g---vkVr-IyAVEKNPp 739 (1072)
T PTZ00357 702 LHLVLLGCGRGPLID----ECLHAVSALG---VRLR-IFAIEKNLP 739 (1072)
T ss_pred EEEEEEcCCccHHHH----HHHHHHHHcC---CcEE-EEEEecCcc
Confidence 468999999996443 3555655542 2344 455566633
No 298
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=31.70 E-value=2.8e+02 Score=25.89 Aligned_cols=98 Identities=16% Similarity=0.208 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhhCCCeEEEEEeCC-CcchHHHHHHHHh-cCCC-----CEEEec-C--CCcchHHHHHHHcceeEEec-h
Q 024872 127 IFAKTVELLKDSFPELITVIHVAP-NRHVENYITGLIQ-KWPV-----PSILVP-G--GSSNLKYDAFSASRVALCTS-G 195 (261)
Q Consensus 127 ~ll~a~~~l~~~~~~~~~vi~~~~-~~~~~~~l~~~~~-~~~~-----~v~v~~-g--~~~~~~~~~~~~aDl~i~~S-G 195 (261)
.+-.|++.+++++||.+.++=+|. +..-++.+.. ++ ..++ ++.++. . +..+ ..-+..+-+ +..| |
T Consensus 62 VLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k-~k~~F~idlDs~nI~Fi~Lk~R~lVe--a~~~~hfTl-lgQaig 137 (465)
T KOG1387|consen 62 VLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNK-VKNKFDIDLDSDNIFFIYLKLRYLVE--ASTWKHFTL-LGQAIG 137 (465)
T ss_pred ehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHH-HHHhcCceecccceEEEEEEeeeeee--cccccceeh-HHHHHH
Confidence 477788888889999887777765 2222222222 22 1111 222211 0 0000 001111111 1122 5
Q ss_pred HHHH--HHHHcCCCEEEEEcCC-hHHHHHHHhcccC
Q 024872 196 TVAV--ELQLARLPCVVAYRAH-FLTEWFIRYKAKI 228 (261)
Q Consensus 196 t~tl--Ea~~~G~P~Vv~~~~~-~~~~~ia~~~~~~ 228 (261)
.+.+ ||..-=.|-|.++.++ ++++-+.|++.++
T Consensus 138 smIl~~Eai~r~~Pdi~IDtMGY~fs~p~~r~l~~~ 173 (465)
T KOG1387|consen 138 SMILAFEAIIRFPPDIFIDTMGYPFSYPIFRRLRRI 173 (465)
T ss_pred HHHHHHHHHHhCCchheEecCCCcchhHHHHHHccC
Confidence 5544 9999999999888664 7898888877543
No 299
>PRK14986 glycogen phosphorylase; Provisional
Probab=31.46 E-value=2.3e+02 Score=29.21 Aligned_cols=117 Identities=14% Similarity=0.118 Sum_probs=65.0
Q ss_pred hcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHH---HHhhhCC-----CeEEEEEeCCCcchH---HHHHH---HHh--
Q 024872 100 KYSVPSGATVISLLPGSRLQEVARMLPIFAKTVE---LLKDSFP-----ELITVIHVAPNRHVE---NYITG---LIQ-- 163 (261)
Q Consensus 100 ~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~---~l~~~~~-----~~~~vi~~~~~~~~~---~~l~~---~~~-- 163 (261)
+.|+.-|...+...=-.|-++-|+..-.++..+. +|.+ .| ..++|+.|=..+.+. +.++. ..+
T Consensus 534 ~~g~~ldp~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~-~p~~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~i 612 (815)
T PRK14986 534 QLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKA-DPDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVI 612 (815)
T ss_pred HhCCccCcccceeeeehhhhhhhhhhHHHhhhHHHHHHHHh-CCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHh
Confidence 4454433333333334788888884332444433 3433 33 367776653222221 11111 111
Q ss_pred ----cCC--CCEEEecCCCcchHHHHHHHcceeEEe-------chHHHHHHHHcCCCEEEEEcCChH
Q 024872 164 ----KWP--VPSILVPGGSSNLKYDAFSASRVALCT-------SGTVAVELQLARLPCVVAYRAHFL 217 (261)
Q Consensus 164 ----~~~--~~v~v~~g~~~~~~~~~~~~aDl~i~~-------SGt~tlEa~~~G~P~Vv~~~~~~~ 217 (261)
+.+ +++.+++.|-..--..++.+||+-.-- |||+..=+|+-|.+.+-+..+.+.
T Consensus 613 n~Dp~v~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nv 679 (815)
T PRK14986 613 NNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANV 679 (815)
T ss_pred ccChhhcCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchh
Confidence 111 246677776344457789999987653 599999999999999966555443
No 300
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=31.26 E-value=2e+02 Score=22.39 Aligned_cols=43 Identities=16% Similarity=0.338 Sum_probs=30.5
Q ss_pred cEEEEEcCC-------cHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCC
Q 024872 108 TVISLLPGS-------RLQEVARMLPIFAKTVELLKDSFPELITVIHVAP 150 (261)
Q Consensus 108 ~vIlll~GS-------R~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~ 150 (261)
-+|++..|. |....+.+.+.+.+..+.+.+..|+..+++++.|
T Consensus 71 Divvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNP 120 (141)
T PF00056_consen 71 DIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNP 120 (141)
T ss_dssp SEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSS
T ss_pred cEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCc
Confidence 355555444 5555677788888888899888888888888766
No 301
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=31.25 E-value=2.8e+02 Score=23.09 Aligned_cols=87 Identities=9% Similarity=0.056 Sum_probs=44.9
Q ss_pred CcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHH
Q 024872 107 ATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSA 186 (261)
Q Consensus 107 ~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~ 186 (261)
.+.++++|||.-+.. .++.|.+. +.++.++. +. ..+.+...... + .+.+.... .....+..
T Consensus 10 ~k~vLVIGgG~va~~---------ka~~Ll~~--ga~V~VIs-~~--~~~~l~~l~~~-~-~i~~~~~~---~~~~~l~~ 70 (202)
T PRK06718 10 NKRVVIVGGGKVAGR---------RAITLLKY--GAHIVVIS-PE--LTENLVKLVEE-G-KIRWKQKE---FEPSDIVD 70 (202)
T ss_pred CCEEEEECCCHHHHH---------HHHHHHHC--CCeEEEEc-CC--CCHHHHHHHhC-C-CEEEEecC---CChhhcCC
Confidence 345788888766431 12233332 35555553 32 22334554443 2 24433221 22456788
Q ss_pred cceeEEechHH----HH-HHHHcCCCEEEEE
Q 024872 187 SRVALCTSGTV----AV-ELQLARLPCVVAY 212 (261)
Q Consensus 187 aDl~i~~SGt~----tl-Ea~~~G~P~Vv~~ 212 (261)
+|++|+.++.- .+ +.+..++++-+++
T Consensus 71 adlViaaT~d~elN~~i~~~a~~~~lvn~~d 101 (202)
T PRK06718 71 AFLVIAATNDPRVNEQVKEDLPENALFNVIT 101 (202)
T ss_pred ceEEEEcCCCHHHHHHHHHHHHhCCcEEECC
Confidence 99999988632 22 3445677765543
No 302
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=31.10 E-value=2.8e+02 Score=25.21 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=57.2
Q ss_pred CCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCC-------cchHHHHHHHHhcCCCCEEEecCCCcc
Q 024872 106 GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPN-------RHVENYITGLIQKWPVPSILVPGGSSN 178 (261)
Q Consensus 106 ~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~-------~~~~~~l~~~~~~~~~~v~v~~g~~~~ 178 (261)
+..+|++. | + .+|-|.++.|. |+=+++++--.. -.. +.++.+-+.++ ...++.+ .+
T Consensus 69 ~Ad~IVf~-G-----V----~FMaETAkiLn---PeK~VL~Pd~~AgCsmA~~~~~-~~~~~~~~~~P-~~~vV~Y--vN 131 (324)
T COG0379 69 DADTIVFA-G-----V----HFMAETAKILN---PEKTVLLPDLEAGCSMADMITA-EEVRAFKEKHP-DAPVVTY--VN 131 (324)
T ss_pred CCCEEEEe-c-----e----eehHhhHhhcC---CCCeEecCCCCCCCCcccCCCH-HHHHHHHHHCC-CCceEEE--ee
Confidence 45567765 3 2 25777777764 555555543211 111 22344434443 2222222 34
Q ss_pred hHHHHHHHcceeEEechHHHH-HHHHcCCCEEEEEcCChHHHHHHHh
Q 024872 179 LKYDAFSASRVALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFIRY 224 (261)
Q Consensus 179 ~~~~~~~~aDl~i~~SGt~tl-Ea~~~G~P~Vv~~~~~~~~~~ia~~ 224 (261)
...++=+.||+++|.|-++-+ |.+ .+..-|+.-+-..|-.++++.
T Consensus 132 tsA~vKA~~Di~cTSsNAvkvVe~~-~~~~~Iif~PD~~Lg~yva~~ 177 (324)
T COG0379 132 TSAEVKAEADICCTSSNAVKVVESA-LDGDKILFLPDKNLGRYVAKQ 177 (324)
T ss_pred ChHHHHhhcCeEEecchHHHHHHhc-cCCCcEEEcCcHHHHHHHHHH
Confidence 567777789999999988766 888 555555555555666667663
No 303
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=30.90 E-value=3.1e+02 Score=22.72 Aligned_cols=11 Identities=27% Similarity=0.226 Sum_probs=8.6
Q ss_pred cEEEEEcCCcH
Q 024872 108 TVISLLPGSRL 118 (261)
Q Consensus 108 ~vIlll~GSR~ 118 (261)
+++++.|||++
T Consensus 3 k~ilItGas~g 13 (248)
T PRK06947 3 KVVLITGASRG 13 (248)
T ss_pred cEEEEeCCCCc
Confidence 46888988876
No 304
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.24 E-value=2.2e+02 Score=25.35 Aligned_cols=54 Identities=9% Similarity=0.003 Sum_probs=28.8
Q ss_pred CeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechH
Q 024872 141 ELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGT 196 (261)
Q Consensus 141 ~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt 196 (261)
+-++++++.. ...=.-+..++.+-+..+.+..-. ..++.+..+.||++|+..|-
T Consensus 158 Gk~vvViGrS-~~VGkPla~lL~~~~ATVt~chs~-T~dl~~~~k~ADIvIsAvGk 211 (282)
T PRK14180 158 GAYAVVVGAS-NVVGKPVSQLLLNAKATVTTCHRF-TTDLKSHTTKADILIVAVGK 211 (282)
T ss_pred CCEEEEECCC-CcchHHHHHHHHHCCCEEEEEcCC-CCCHHHHhhhcCEEEEccCC
Confidence 4456665543 222222333443333334433222 35778888999999987764
No 305
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=29.94 E-value=3.4e+02 Score=22.83 Aligned_cols=31 Identities=10% Similarity=-0.152 Sum_probs=18.7
Q ss_pred CcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEE
Q 024872 107 ATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIH 147 (261)
Q Consensus 107 ~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~ 147 (261)
.+++++.|||.+ |.+ ..+++|.+ .+.++++.
T Consensus 8 ~k~~lItGas~g--IG~------aia~~l~~--~G~~vv~~ 38 (251)
T PRK12481 8 GKVAIITGCNTG--LGQ------GMAIGLAK--AGADIVGV 38 (251)
T ss_pred CCEEEEeCCCch--HHH------HHHHHHHH--CCCEEEEe
Confidence 468899999987 443 12334444 35666554
No 306
>PRK06139 short chain dehydrogenase; Provisional
Probab=29.79 E-value=3.8e+02 Score=24.01 Aligned_cols=12 Identities=17% Similarity=0.130 Sum_probs=9.8
Q ss_pred CcEEEEEcCCcH
Q 024872 107 ATVISLLPGSRL 118 (261)
Q Consensus 107 ~~vIlll~GSR~ 118 (261)
.+++++.|||.+
T Consensus 7 ~k~vlITGAs~G 18 (330)
T PRK06139 7 GAVVVITGASSG 18 (330)
T ss_pred CCEEEEcCCCCH
Confidence 357899999887
No 307
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.58 E-value=2.2e+02 Score=25.48 Aligned_cols=54 Identities=7% Similarity=-0.040 Sum_probs=28.4
Q ss_pred CeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechH
Q 024872 141 ELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGT 196 (261)
Q Consensus 141 ~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt 196 (261)
+-++++++.. ...-..+..++.+.+..+.+..-. ..+..+..+.||++|+..|-
T Consensus 164 Gk~vvViGrs-~iVGkPla~lL~~~~atVtv~hs~-T~~l~~~~~~ADIvv~AvG~ 217 (287)
T PRK14176 164 GKNAVIVGHS-NVVGKPMAAMLLNRNATVSVCHVF-TDDLKKYTLDADILVVATGV 217 (287)
T ss_pred CCEEEEECCC-cccHHHHHHHHHHCCCEEEEEecc-CCCHHHHHhhCCEEEEccCC
Confidence 4455555443 222222344444334344443222 35778888899998876653
No 308
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=29.31 E-value=4.1e+02 Score=23.65 Aligned_cols=98 Identities=15% Similarity=0.131 Sum_probs=54.9
Q ss_pred CCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHH
Q 024872 106 GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFS 185 (261)
Q Consensus 106 ~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~ 185 (261)
|.-+||.-+=||.- +..++.|.+ ....+++++--+.....-..+.+.+++.++++.++-+ .-....|.
T Consensus 130 dg~~ILtHg~SRvV-----l~~L~~Aa~----~~~~F~V~vTEsrPd~sG~lm~~~L~~~~IPvtlvlD---SaVgyvMe 197 (313)
T KOG1466|consen 130 DGCTILTHGYSRVV-----LEVLLTAAQ----NKKRFRVYVTESRPDGSGKLMAKELKKLGIPVTLVLD---SAVGYVME 197 (313)
T ss_pred CCCEEEEcchhHHH-----HHHHHHHHh----cCceEEEEEecCCCCCchhHHHHHHHhcCCCeEEEeh---hhHHHHHh
Confidence 55678887666652 223333332 2234554433222111112344456667777765432 25677899
Q ss_pred HcceeEEec-------------hHHH--HHHHHcCCCEEEEEcCC
Q 024872 186 ASRVALCTS-------------GTVA--VELQLARLPCVVAYRAH 215 (261)
Q Consensus 186 ~aDl~i~~S-------------Gt~t--lEa~~~G~P~Vv~~~~~ 215 (261)
..|+++.-+ ||-+ +=|-...+|.-++....
T Consensus 198 ~vD~VlVGAEGVvEsGGIIN~iGTyq~~v~Ak~~~kPfYV~AES~ 242 (313)
T KOG1466|consen 198 RVDLVLVGAEGVVESGGIINKIGTYQVAVCAKSMNKPFYVVAESH 242 (313)
T ss_pred hccEEEEccceeeecCceeeecccchhhhhHHhcCCCeEEEeecc
Confidence 999998765 4533 35677899987765443
No 309
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=29.19 E-value=5.2e+02 Score=24.78 Aligned_cols=37 Identities=11% Similarity=-0.034 Sum_probs=25.5
Q ss_pred chHHHHHHH--cceeEEec-hH----HHHHHHHcCCCEEEEEcC
Q 024872 178 NLKYDAFSA--SRVALCTS-GT----VAVELQLARLPCVVAYRA 214 (261)
Q Consensus 178 ~~~~~~~~~--aDl~i~~S-Gt----~tlEa~~~G~P~Vv~~~~ 214 (261)
+.+.++... +|++|..- |. -|++|...|+.+.+..|-
T Consensus 139 egl~~la~~~evDiVV~AIvG~aGL~pTl~AIkaGK~VALANKE 182 (454)
T PLN02696 139 EGIVEVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKE 182 (454)
T ss_pred HHHHHHHcCCCCCEEEEeCccccchHHHHHHHHCCCcEEEecHH
Confidence 455566654 48888765 42 477999999998876653
No 310
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=29.14 E-value=4.2e+02 Score=23.70 Aligned_cols=150 Identities=11% Similarity=0.069 Sum_probs=74.4
Q ss_pred hhcCCCCeEEEEeCCccccccCCcc---hHHHHHhchhhheecCcchH--HHHHH-cCCCeEEEc----CCCccchhhhc
Q 024872 9 HERLNGPAHFHYVAPSFWAWKGGEA---RLKNLAAFVDHILCILPNEE--AICRL-NGLAATFVG----HPVVEDCLELN 78 (261)
Q Consensus 9 ~~~~~ip~~~~yv~p~~waw~~g~~---r~~~l~~~~d~v~~~~p~e~--~~~~~-~g~~~~~vG----~P~~d~~~~~~ 78 (261)
.+++|.-++ ++ .++-+....|+. -++-+.+++|.+.+-.+... +.+.+ .++++.--| ||- +.+.
T Consensus 61 ~~~LGg~~i-~l-~~~~ss~~kgEsl~Dt~~vls~y~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPt-QaL~--- 134 (304)
T TIGR00658 61 AYQLGGHPL-YL-NPNDLQLGRGESIKDTARVLSRYVDGIMARVYKHEDVEELAKYASVPVINGLTDLFHPC-QALA--- 134 (304)
T ss_pred HHHcCCCEE-Ee-CCccccCCCCCCHHHHHHHHHHhCCEEEEECCChHHHHHHHHhCCCCEEECCCCCCChH-HHHH---
Confidence 344577663 44 444444443422 23447889999999888763 23322 234433222 220 0000
Q ss_pred CCCCCCCcccccCCCcHHHHhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHH-
Q 024872 79 LGKGPEPCELKMEGNSEDFKNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENY- 157 (261)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~- 157 (261)
|---+++++|- -++..|+++|.. ++....++.++.++ ++.+.+++.+.....+.
T Consensus 135 --------------Dl~Ti~e~~g~-l~g~~v~~vGd~-----~~v~~Sl~~~l~~~-----g~~v~~~~P~~~~~~~~~ 189 (304)
T TIGR00658 135 --------------DLLTIIEHFGK-LKGVKVVYVGDG-----NNVCNSLMLAGAKL-----GMDVVVATPEGYEPDADI 189 (304)
T ss_pred --------------HHHHHHHHhCC-CCCcEEEEEeCC-----CchHHHHHHHHHHc-----CCEEEEECCchhcCCHHH
Confidence 11123445553 234567777552 12222344444433 46777766542211111
Q ss_pred ---HHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEec
Q 024872 158 ---ITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTS 194 (261)
Q Consensus 158 ---l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~S 194 (261)
+++..++.+..+.+. +++.+.+..||++.+.+
T Consensus 190 ~~~~~~~~~~~g~~~~~~-----~d~~~a~~~aDvvy~~~ 224 (304)
T TIGR00658 190 VKKAQEIAKENGGSVELT-----HDPVEAVKGADVIYTDV 224 (304)
T ss_pred HHHHHHHHHHcCCeEEEE-----cCHHHHhCCCCEEEEcC
Confidence 222234444444443 37889999999999975
No 311
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=29.10 E-value=2.6e+02 Score=25.08 Aligned_cols=64 Identities=23% Similarity=0.408 Sum_probs=41.6
Q ss_pred cCCCCCCcEEEEEcCCcHH-------HHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcC
Q 024872 101 YSVPSGATVISLLPGSRLQ-------EVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKW 165 (261)
Q Consensus 101 l~l~~~~~vIlll~GSR~~-------ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~ 165 (261)
+....+.+++.+..|+|.+ -+.++...|...+..+.+-.|+..++++.-| .+...+..-.+.++
T Consensus 83 y~~sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNP-VDilTYv~wKLSgf 153 (332)
T KOG1495|consen 83 YSVSANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNP-VDILTYVTWKLSGF 153 (332)
T ss_pred ccccCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCc-hHHHHHHHHHHcCC
Confidence 4445677888889898875 2445566666677777766788888888765 34334444334443
No 312
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=28.97 E-value=4.2e+02 Score=23.61 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=25.2
Q ss_pred chHHHHHHHcceeEEechHHH----HHHHH---cCCCEEEEEcCC
Q 024872 178 NLKYDAFSASRVALCTSGTVA----VELQL---ARLPCVVAYRAH 215 (261)
Q Consensus 178 ~~~~~~~~~aDl~i~~SGt~t----lEa~~---~G~P~Vv~~~~~ 215 (261)
++..+.+..+|++|+.+|... ++.+. .|.|.++++-..
T Consensus 230 ~~~~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 230 DELLELLNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred HHHHHHHhcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence 367788899999999998532 33222 246788776443
No 313
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=28.95 E-value=1.3e+02 Score=26.85 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=20.6
Q ss_pred HHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechHHH
Q 024872 157 YITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVA 198 (261)
Q Consensus 157 ~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~t 198 (261)
.|.+..+..+.+...+... .+--++|+..++-+=..||++|
T Consensus 225 rL~ei~~~~~~~t~~Ie~~-~el~~~~l~~~~~VGiTAGAST 265 (280)
T TIGR00216 225 RLYEIAEEHGPPSYLIETA-EELPEEWLKGVKVVGITAGAST 265 (280)
T ss_pred HHHHHHHHhCCCEEEECCh-HHCCHHHhCCCCEEEEEecCCC
Confidence 3444555554444444321 1113567777666555667654
No 314
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=28.84 E-value=2.7e+02 Score=21.37 Aligned_cols=11 Identities=9% Similarity=-0.025 Sum_probs=9.2
Q ss_pred cEEEEEcCCcH
Q 024872 108 TVISLLPGSRL 118 (261)
Q Consensus 108 ~vIlll~GSR~ 118 (261)
++++++|||++
T Consensus 1 k~~lItGa~~g 11 (167)
T PF00106_consen 1 KTVLITGASSG 11 (167)
T ss_dssp EEEEEETTTSH
T ss_pred CEEEEECCCCH
Confidence 47889999988
No 315
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=28.35 E-value=1.7e+02 Score=20.52 Aligned_cols=26 Identities=8% Similarity=0.135 Sum_probs=16.3
Q ss_pred HHHHcceeEEechHHHHHHHHcCCCEEEEE
Q 024872 183 AFSASRVALCTSGTVAVELQLARLPCVVAY 212 (261)
Q Consensus 183 ~~~~aDl~i~~SGt~tlEa~~~G~P~Vv~~ 212 (261)
.+..+|++++..-... ..++|.|.+.
T Consensus 45 ~~~~~Dliist~~~~~----~~~~p~i~v~ 70 (89)
T cd05566 45 LLDDADLIVSTTKVPE----DYGIPVINGL 70 (89)
T ss_pred ccCCCcEEEEcCCcCC----CCCCCEEEEe
Confidence 4567888887654321 3368987664
No 316
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=27.94 E-value=3.5e+02 Score=22.37 Aligned_cols=74 Identities=11% Similarity=0.113 Sum_probs=41.4
Q ss_pred CeEEEEEeCCCcchHHHHHHHHhcCCC---CEEEecCCCcchHH------------------------HHHHHcceeEEe
Q 024872 141 ELITVIHVAPNRHVENYITGLIQKWPV---PSILVPGGSSNLKY------------------------DAFSASRVALCT 193 (261)
Q Consensus 141 ~~~~vi~~~~~~~~~~~l~~~~~~~~~---~v~v~~g~~~~~~~------------------------~~~~~aDl~i~~ 193 (261)
+-++++++.+. .....+++.++..+. .-++++|...+-.. ....--|++|..
T Consensus 56 ~g~iLfV~t~~-~~~~~v~~~a~~~~~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~~~~~k~~~g~~~~~~~Pdlviv~ 134 (193)
T cd01425 56 GGKILFVGTKP-QAQRAVKKFAERTGSFYVNGRWLGGTLTNWKTIRKSIKRLKKLEKEKLEKNLGGIKDMFRLPDLVIVL 134 (193)
T ss_pred CCEEEEEECCH-HHHHHHHHHHHHcCCeeecCeecCCcCCCHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCEEEEe
Confidence 45677777653 344555555554332 22566665422111 123456777776
Q ss_pred ch---HHHH-HHHHcCCCEEEEEcCC
Q 024872 194 SG---TVAV-ELQLARLPCVVAYRAH 215 (261)
Q Consensus 194 SG---t~tl-Ea~~~G~P~Vv~~~~~ 215 (261)
.- ...+ ||..+|+|+|-+-.++
T Consensus 135 ~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 135 DPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred CCccchHHHHHHHHcCCCEEEEecCC
Confidence 52 2444 9999999999664443
No 317
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=27.74 E-value=2.2e+02 Score=20.01 Aligned_cols=29 Identities=3% Similarity=0.007 Sum_probs=17.9
Q ss_pred HHcceeEEechHHHH-HHHHcCCCEEEEEc
Q 024872 185 SASRVALCTSGTVAV-ELQLARLPCVVAYR 213 (261)
Q Consensus 185 ~~aDl~i~~SGt~tl-Ea~~~G~P~Vv~~~ 213 (261)
..+|++++..-...- .......|+|.+.+
T Consensus 44 ~~~Dliitt~~l~~~~~~~~~~~~vi~v~~ 73 (87)
T cd05567 44 SDADLVVTHASLTDRAKKKAPQAQHLSVDN 73 (87)
T ss_pred CCCCEEEEChHHHHHHHhcCCCCeEEEEec
Confidence 578999987654431 21233789887644
No 318
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.65 E-value=2.8e+02 Score=24.95 Aligned_cols=54 Identities=13% Similarity=0.009 Sum_probs=27.8
Q ss_pred CeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechH
Q 024872 141 ELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGT 196 (261)
Q Consensus 141 ~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt 196 (261)
+-++++++.. ...=.-+..++.+.+..+.+..-. ..++.++.+.||++|+..|-
T Consensus 160 Gk~vvViGrS-~iVGkPla~lL~~~~aTVt~chs~-T~~l~~~~~~ADIvVsAvGk 213 (294)
T PRK14187 160 GSDAVVIGRS-NIVGKPMACLLLGENCTVTTVHSA-TRDLADYCSKADILVAAVGI 213 (294)
T ss_pred CCEEEEECCC-ccchHHHHHHHhhCCCEEEEeCCC-CCCHHHHHhhCCEEEEccCC
Confidence 3455555432 222222334443333334433222 34677888888888887764
No 319
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=27.43 E-value=3.5e+02 Score=22.66 Aligned_cols=85 Identities=16% Similarity=0.103 Sum_probs=50.0
Q ss_pred HHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEech-H--HHHHHHHc
Q 024872 128 FAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSG-T--VAVELQLA 204 (261)
Q Consensus 128 ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SG-t--~tlEa~~~ 204 (261)
-+++++.+.+++|++. + |.+.--..+..++. .+.+.++.+.+++ .+++.++-...++.+.+.- | -..+|+-+
T Consensus 46 a~~~I~~l~~~~p~~~--v-GAGTV~~~e~a~~a-~~aGA~FivSP~~-~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~ 120 (196)
T PF01081_consen 46 ALEAIEALRKEFPDLL--V-GAGTVLTAEQAEAA-IAAGAQFIVSPGF-DPEVIEYAREYGIPYIPGVMTPTEIMQALEA 120 (196)
T ss_dssp HHHHHHHHHHHHTTSE--E-EEES--SHHHHHHH-HHHT-SEEEESS---HHHHHHHHHHTSEEEEEESSHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCe--e-EEEeccCHHHHHHH-HHcCCCEEECCCC-CHHHHHHHHHcCCcccCCcCCHHHHHHHHHC
Confidence 4566677777778743 2 33322112223433 3345567777765 6788888888898886642 2 33378899
Q ss_pred CCCEEEEEcCChH
Q 024872 205 RLPCVVAYRAHFL 217 (261)
Q Consensus 205 G~P~Vv~~~~~~~ 217 (261)
|..+|=+++.+.+
T Consensus 121 G~~~vK~FPA~~~ 133 (196)
T PF01081_consen 121 GADIVKLFPAGAL 133 (196)
T ss_dssp T-SEEEETTTTTT
T ss_pred CCCEEEEecchhc
Confidence 9999977776543
No 320
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=27.43 E-value=2e+02 Score=23.91 Aligned_cols=32 Identities=3% Similarity=0.053 Sum_probs=20.9
Q ss_pred HHHhcCCCCEEEecCCCcchHHHHHHHcceeEEec
Q 024872 160 GLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTS 194 (261)
Q Consensus 160 ~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~S 194 (261)
...++.+.++.+.. ..|..+++..||++|+.-
T Consensus 50 ~~~~~~~~~~~v~~---ttd~~eAl~gADfVi~~i 81 (183)
T PF02056_consen 50 RMVEEAGADLKVEA---TTDRREALEGADFVINQI 81 (183)
T ss_dssp HHHHHCTTSSEEEE---ESSHHHHHTTESEEEE--
T ss_pred HHHHhcCCCeEEEE---eCCHHHHhCCCCEEEEEe
Confidence 34455555555532 347899999999999965
No 321
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=27.33 E-value=4.5e+02 Score=23.50 Aligned_cols=125 Identities=8% Similarity=0.020 Sum_probs=63.2
Q ss_pred HHHHhchhhheecCcchH--HHHH-HcCCCeEEEc----CCCccchhhhcCCCCCCCcccccCCCcHHHHhhcCCCCCCc
Q 024872 36 KNLAAFVDHILCILPNEE--AICR-LNGLAATFVG----HPVVEDCLELNLGKGPEPCELKMEGNSEDFKNKYSVPSGAT 108 (261)
Q Consensus 36 ~~l~~~~d~v~~~~p~e~--~~~~-~~g~~~~~vG----~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~~~~ 108 (261)
+-|..++|.+.+-.+... +.+. ..++++.--| ||- +.+. |---+++++|- -+..
T Consensus 93 ~~l~~~~D~iv~R~~~~~~~~~~a~~~~vPVINag~~~~HPt-QaL~-----------------Dl~Ti~e~~g~-l~gl 153 (304)
T PRK00779 93 RVLSRYVDAIMIRTFEHETLEELAEYSTVPVINGLTDLSHPC-QILA-----------------DLLTIYEHRGS-LKGL 153 (304)
T ss_pred HHHHHhCCEEEEcCCChhHHHHHHHhCCCCEEeCCCCCCChH-HHHH-----------------HHHHHHHHhCC-cCCc
Confidence 446888999988887653 2332 2234433222 331 0010 01123455553 2345
Q ss_pred EEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchH-HHHHHHHhcCCCCEEEecCCCcchHHHHHHHc
Q 024872 109 VISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVE-NYITGLIQKWPVPSILVPGGSSNLKYDAFSAS 187 (261)
Q Consensus 109 vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~-~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~a 187 (261)
.|+++|. .. +....+..++.. . ++.+.+++.+..... +.++...++.+..+.+. +++.+++..|
T Consensus 154 ~i~~vGd-~~----~v~~Sl~~~l~~----~-g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~-----~d~~~a~~~a 218 (304)
T PRK00779 154 KVAWVGD-GN----NVANSLLLAAAL----L-GFDLRVATPKGYEPDPEIVEKIAKETGASIEVT-----HDPKEAVKGA 218 (304)
T ss_pred EEEEEeC-CC----ccHHHHHHHHHH----c-CCEEEEECCcccCCCHHHHHHHHHHcCCeEEEE-----cCHHHHhCCC
Confidence 6777765 11 112234444433 2 577777665432221 22222234445445443 4789999999
Q ss_pred ceeEEec
Q 024872 188 RVALCTS 194 (261)
Q Consensus 188 Dl~i~~S 194 (261)
|++.+.+
T Consensus 219 Dvvy~~~ 225 (304)
T PRK00779 219 DVVYTDV 225 (304)
T ss_pred CEEEecC
Confidence 9999974
No 322
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=27.18 E-value=1.5e+02 Score=28.20 Aligned_cols=76 Identities=9% Similarity=0.012 Sum_probs=35.0
Q ss_pred CcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHH--hcCCCCEEEecCCCcchHHHHH
Q 024872 107 ATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLI--QKWPVPSILVPGGSSNLKYDAF 184 (261)
Q Consensus 107 ~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~--~~~~~~v~v~~g~~~~~~~~~~ 184 (261)
.++|+.+|.+||--+ ...++|.++. . ...-|.+...|......++..+ .+|+..|.++.+..+ + .+.=
T Consensus 187 ~~vVldVGAGrGpL~----~~al~A~~~~---~-~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r-~-v~lp 256 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLS----MFALQAGARA---G-GAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMR-E-VELP 256 (448)
T ss_dssp T-EEEEES-TTSHHH----HHHHHTTHHH---C-CESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TT-T-SCHS
T ss_pred ceEEEEeCCCccHHH----HHHHHHHHHh---C-CCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCccc-C-CCCC
Confidence 478999999998311 1233333332 2 2233555555543223334432 356556777755321 1 1111
Q ss_pred HHcceeEE
Q 024872 185 SASRVALC 192 (261)
Q Consensus 185 ~~aDl~i~ 192 (261)
..+|++|+
T Consensus 257 ekvDIIVS 264 (448)
T PF05185_consen 257 EKVDIIVS 264 (448)
T ss_dssp S-EEEEEE
T ss_pred CceeEEEE
Confidence 26787776
No 323
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=27.16 E-value=3.9e+02 Score=24.62 Aligned_cols=49 Identities=14% Similarity=0.057 Sum_probs=29.3
Q ss_pred CeEEEEEeCCCcch-HHHH---HHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEec
Q 024872 141 ELITVIHVAPNRHV-ENYI---TGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTS 194 (261)
Q Consensus 141 ~~~~vi~~~~~~~~-~~~l---~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~S 194 (261)
++.+.+++.+.-.. .+.+ ++.+++.+..+.+. +++.+++..||++.+.+
T Consensus 201 G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~-----~d~~ea~~~aDvvyt~~ 253 (357)
T TIGR03316 201 GMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIV-----NSMDEAFKDADIVYPKS 253 (357)
T ss_pred CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEE-----cCHHHHhCCCCEEEECC
Confidence 57777766542111 1212 22344455445443 47889999999999985
No 324
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=26.99 E-value=6.2e+02 Score=25.96 Aligned_cols=109 Identities=17% Similarity=0.109 Sum_probs=61.1
Q ss_pred CCCcEEEEEcCCcHHHHHhhHHHHHHHHH---HHh-hhCCCeEEEEEeCCCcch---HHHHHH---HHhc--CCCCEEEe
Q 024872 105 SGATVISLLPGSRLQEVARMLPIFAKTVE---LLK-DSFPELITVIHVAPNRHV---ENYITG---LIQK--WPVPSILV 172 (261)
Q Consensus 105 ~~~~vIlll~GSR~~ei~~~~~~ll~a~~---~l~-~~~~~~~~vi~~~~~~~~---~~~l~~---~~~~--~~~~v~v~ 172 (261)
++..++... -|.++-|+..-.+++... .+. +..|.+++++.|=..+.+ ++.++. .++. ...+|.++
T Consensus 485 p~~lfd~~~--kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl 562 (750)
T COG0058 485 PNALFDGQA--RRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFL 562 (750)
T ss_pred CCcceeeee--hhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEe
Confidence 444445443 666788874434444332 222 223556655544222221 111111 1111 12357778
Q ss_pred cCCCcchHHHHHHHcceeEEe-------chHHHHHHHHcCCCEEEEEcCC
Q 024872 173 PGGSSNLKYDAFSASRVALCT-------SGTVAVELQLARLPCVVAYRAH 215 (261)
Q Consensus 173 ~g~~~~~~~~~~~~aDl~i~~-------SGt~tlEa~~~G~P~Vv~~~~~ 215 (261)
+.|-..-...++.+||+-.-- |||+..=++.-|.+.|-+-.+.
T Consensus 563 ~nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGa 612 (750)
T COG0058 563 PNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGA 612 (750)
T ss_pred CCCChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccH
Confidence 876444567788999998764 4999999999999999654443
No 325
>PF02445 NadA: Quinolinate synthetase A protein; InterPro: IPR003473 Quinolinate synthetase catalyzes the second step of the de novo biosynthetic pathway of pyridine nucleotide formation. In particular, quinolinate synthetase is involved in the condensation of dihydroxyacetone phosphate and iminoaspartate to form quinolinic acid []. This synthesis requires two enzymes, an FAD-containing "B protein" and an "A protein".; GO: 0008987 quinolinate synthetase A activity, 0009435 NAD biosynthetic process; PDB: 2QS0_A 1WZU_A.
Probab=26.98 E-value=4.7e+02 Score=23.55 Aligned_cols=101 Identities=15% Similarity=0.188 Sum_probs=50.6
Q ss_pred CCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCC---c-c--hHHHHHHHHhcCCCCEEEecCCCcc
Q 024872 105 SGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPN---R-H--VENYITGLIQKWPVPSILVPGGSSN 178 (261)
Q Consensus 105 ~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~---~-~--~~~~l~~~~~~~~~~v~v~~g~~~~ 178 (261)
.+..+|+|.| + .+|-|.++-|. |+=+++++-... . + -.+.++++-++++. ..++.+ .+
T Consensus 45 ~~a~~IVfcG------V----~FMAEtAkIL~---P~K~VllPd~~AgC~MAdm~~~~~v~~~k~~~p~-~~vV~Y--VN 108 (296)
T PF02445_consen 45 TDADIIVFCG------V----HFMAETAKILN---PDKKVLLPDPEAGCPMADMATAEDVRELKEEYPD-AAVVTY--VN 108 (296)
T ss_dssp -SSSEEEEES-----------HHHHHHHHHH----TTSEEE-SS--------TT--HHHHHHHHHHSTT-S-EEEE--SS
T ss_pred CCCCEEEEec------c----eehHhhHHhhC---CCCEEEecCCCCCCchhhhCCHHHHHHHHHHCCC-CeEEEE--ec
Confidence 4667787763 3 36888876664 665666543211 0 0 11223443344432 222322 34
Q ss_pred hHHHHHHHcceeEEechHHHH-HHHHcCCCEEEEEcCChHHHHHH
Q 024872 179 LKYDAFSASRVALCTSGTVAV-ELQLARLPCVVAYRAHFLTEWFI 222 (261)
Q Consensus 179 ~~~~~~~~aDl~i~~SGt~tl-Ea~~~G~P~Vv~~~~~~~~~~ia 222 (261)
.-.++=+.+|+.+|.|-+..+ +.+--+.+++.+ +-.-|-.+++
T Consensus 109 ssAevKA~sdi~cTSsNA~kIv~~l~~~~~IlF~-PD~nLG~~v~ 152 (296)
T PF02445_consen 109 SSAEVKAESDICCTSSNAVKIVRSLPQDKKILFL-PDKNLGRYVA 152 (296)
T ss_dssp S-HHHHTT-SEEE-TTTHHHHHHCSS-SE-EEEE-S-HHHHHHHH
T ss_pred ChHHHHccCCeEEECccHHHHHHHhcCCCeEEEc-CcHHHHHHHH
Confidence 556677799999999988877 887778887764 3333444444
No 326
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=26.77 E-value=5.7e+02 Score=26.79 Aligned_cols=104 Identities=15% Similarity=0.110 Sum_probs=51.2
Q ss_pred cHHHHhhcCCCCCCc-EEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEe
Q 024872 94 SEDFKNKYSVPSGAT-VISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILV 172 (261)
Q Consensus 94 ~~~~r~~l~l~~~~~-vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~ 172 (261)
...+-++.|+..+.. .+++- |+. .+...+. -+.++. .+.. |++--. ++-+..+-+.+++.+.-+-..
T Consensus 577 A~aIa~~~Gi~~~~~~~~vi~-G~e---l~~l~~~---el~~~~---~~~~-VfARvs-P~qK~~IV~~lq~~g~vVamt 644 (917)
T COG0474 577 AIAIAKECGIEAEAESALVID-GAE---LDALSDE---ELAELV---EELS-VFARVS-PEQKARIVEALQKSGHVVAMT 644 (917)
T ss_pred HHHHHHHcCCCCCCCceeEee-hHH---hhhcCHH---HHHHHh---hhCc-EEEEcC-HHHHHHHHHHHHhCCCEEEEe
Confidence 345667888887765 23433 443 3332111 122222 2344 333321 222233334455556434444
Q ss_pred cCCCcchHHHHHHHcceeEEechHHHHHHHHcCCCEEEEE
Q 024872 173 PGGSSNLKYDAFSASRVALCTSGTVAVELQLARLPCVVAY 212 (261)
Q Consensus 173 ~g~~~~~~~~~~~~aDl~i~~SGt~tlEa~~~G~P~Vv~~ 212 (261)
|.-.+|.+ +++.||+.|+..|+.|- ++-.--++|++.
T Consensus 645 -GDGvNDap-ALk~ADVGIamg~~Gtd-aak~Aadivl~d 681 (917)
T COG0474 645 -GDGVNDAP-ALKAADVGIAMGGEGTD-AAKEAADIVLLD 681 (917)
T ss_pred -CCCchhHH-HHHhcCccEEecccHHH-HHHhhcceEeec
Confidence 43356654 78999999988853322 222225777764
No 327
>PRK14599 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Provisional
Probab=26.70 E-value=3.9e+02 Score=23.00 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=37.1
Q ss_pred HHHH-HHHHcCCCEEEEEcCChHHHHHHH-hcccCCccchhhhhcCCCCcccccC
Q 024872 196 TVAV-ELQLARLPCVVAYRAHFLTEWFIR-YKAKIPYISLPNILLDSPIIPEALL 248 (261)
Q Consensus 196 t~tl-Ea~~~G~P~Vv~~~~~~~~~~ia~-~~~~~~~~~l~Nil~~~~i~pE~lq 248 (261)
++++ +|.+-=+|-|+-...+..++-+.. .|+-.|.++-|-..-+.+ +||.|.
T Consensus 143 Amv~iDav~RllPGVlg~~~S~~~eSF~~~gLLe~P~YTRP~~~~g~~-VPeVLL 196 (222)
T PRK14599 143 SICIADAVSRLLPGFLGAEESLLDESHNEPDELEYPQFTKPSEYNGWK-VPDVLL 196 (222)
T ss_pred HHHHHHHHHHhCCCccCCcccccccccCCCCCCCCCCcCChhhcCCCc-CCcccc
Confidence 4555 999999999986666655555543 577888999998887665 455554
No 328
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=26.58 E-value=5e+02 Score=24.34 Aligned_cols=49 Identities=10% Similarity=-0.031 Sum_probs=29.1
Q ss_pred CeEEEEEeCCCcch-HHH---HHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEec
Q 024872 141 ELITVIHVAPNRHV-ENY---ITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTS 194 (261)
Q Consensus 141 ~~~~vi~~~~~~~~-~~~---l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~S 194 (261)
++.+.+++.+.-.. .+. .++..++.+..+.+. +++.+++..||++.+.+
T Consensus 218 G~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~-----~d~~eav~~aDvVYtd~ 270 (395)
T PRK07200 218 GMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQV-----NSMEEAFKDADIVYPKS 270 (395)
T ss_pred CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEE-----cCHHHHhCCCCEEEEcC
Confidence 57777776543111 121 122344445445443 37889999999999975
No 329
>PRK08291 ectoine utilization protein EutC; Validated
Probab=26.47 E-value=4.5e+02 Score=23.62 Aligned_cols=19 Identities=11% Similarity=0.134 Sum_probs=15.3
Q ss_pred chHHHHHHHcceeEEechH
Q 024872 178 NLKYDAFSASRVALCTSGT 196 (261)
Q Consensus 178 ~~~~~~~~~aDl~i~~SGt 196 (261)
++..++++.||++++.+.+
T Consensus 189 ~d~~~al~~aDiVi~aT~s 207 (330)
T PRK08291 189 RDVHEAVAGADIIVTTTPS 207 (330)
T ss_pred CCHHHHHccCCEEEEeeCC
Confidence 3677888999999998754
No 330
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=26.47 E-value=3.9e+02 Score=22.48 Aligned_cols=33 Identities=9% Similarity=0.133 Sum_probs=19.6
Q ss_pred CcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeC
Q 024872 107 ATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVA 149 (261)
Q Consensus 107 ~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~ 149 (261)
.+++++.|||++ +.+ ..++++.+ .+.++++.+.
T Consensus 8 ~k~vlItGas~g--IG~------~ia~~l~~--~G~~v~~~~~ 40 (260)
T PRK08416 8 GKTLVISGGTRG--IGK------AIVYEFAQ--SGVNIAFTYN 40 (260)
T ss_pred CCEEEEeCCCch--HHH------HHHHHHHH--CCCEEEEEcC
Confidence 357899999988 433 12334444 3566665543
No 331
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=26.37 E-value=48 Score=25.50 Aligned_cols=35 Identities=11% Similarity=0.085 Sum_probs=22.7
Q ss_pred HHhchhhheecCcchHHHHHHcCCC---eEEEcCCCcc
Q 024872 38 LAAFVDHILCILPNEEAICRLNGLA---ATFVGHPVVE 72 (261)
Q Consensus 38 l~~~~d~v~~~~p~e~~~~~~~g~~---~~~vG~P~~d 72 (261)
+.+.+|+++|.+++..+.+.+.|++ +.++-|++.+
T Consensus 136 ~~~~~~~ii~vS~~~~~~l~~~~~~~~ki~vI~ngid~ 173 (177)
T PF13439_consen 136 LYKKADRIIAVSESTKDELIKFGIPPEKIHVIYNGIDT 173 (177)
T ss_dssp HHCCSSEEEESSHHHHHHHHHHT--SS-EEE----B-C
T ss_pred HHhcCCEEEEECHHHHHHHHHhCCcccCCEEEECCccH
Confidence 3456999999999999998777754 6777777654
No 332
>PRK14982 acyl-ACP reductase; Provisional
Probab=26.35 E-value=5e+02 Score=23.79 Aligned_cols=35 Identities=9% Similarity=0.247 Sum_probs=26.4
Q ss_pred hHHHHHHHcceeEEechH-H--HHHHHHcCCCEEEEEc
Q 024872 179 LKYDAFSASRVALCTSGT-V--AVELQLARLPCVVAYR 213 (261)
Q Consensus 179 ~~~~~~~~aDl~i~~SGt-~--tlEa~~~G~P~Vv~~~ 213 (261)
++.+.+..+|++++.+|. . .+....+..|+++++-
T Consensus 208 ~l~~~l~~aDiVv~~ts~~~~~~I~~~~l~~~~~viDi 245 (340)
T PRK14982 208 SLEEALPEADIVVWVASMPKGVEIDPETLKKPCLMIDG 245 (340)
T ss_pred hHHHHHccCCEEEECCcCCcCCcCCHHHhCCCeEEEEe
Confidence 567899999999998875 2 2444566899998863
No 333
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=26.21 E-value=1.4e+02 Score=26.57 Aligned_cols=39 Identities=8% Similarity=0.093 Sum_probs=19.8
Q ss_pred HHHHHhcCCCCEEEecCCCcchH-HHHHHHcceeEEechHHH
Q 024872 158 ITGLIQKWPVPSILVPGGSSNLK-YDAFSASRVALCTSGTVA 198 (261)
Q Consensus 158 l~~~~~~~~~~v~v~~g~~~~~~-~~~~~~aDl~i~~SGt~t 198 (261)
|-+..++.+.+...+... +++ .+|+..+.-+=..||++|
T Consensus 227 L~eia~~~~~~t~~Ie~~--~el~~~~~~~~~~VGitaGAST 266 (281)
T PRK12360 227 LVKICEKNCPNTFHIETA--DELDLEMLKDYKIIGITAGAST 266 (281)
T ss_pred HHHHHHHHCCCEEEECCh--HHCCHHHhCCCCEEEEEccCCC
Confidence 444444444344334331 232 567776665555677654
No 334
>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]
Probab=26.20 E-value=2.1e+02 Score=24.96 Aligned_cols=34 Identities=15% Similarity=0.094 Sum_probs=22.4
Q ss_pred EEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCc
Q 024872 110 ISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNR 152 (261)
Q Consensus 110 Illl~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~ 152 (261)
+++.||.|| |. +-.++++.+ .++++.++.+.++.
T Consensus 6 v~ItGaNRG--IG------lgLVk~llk-~~~i~~iiat~r~~ 39 (249)
T KOG1611|consen 6 VFITGANRG--IG------LGLVKELLK-DKGIEVIIATARDP 39 (249)
T ss_pred EEEeccCcc--hh------HHHHHHHhc-CCCcEEEEEecCCh
Confidence 788999998 32 123345553 47888888877654
No 335
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.13 E-value=3.1e+02 Score=24.45 Aligned_cols=54 Identities=7% Similarity=-0.004 Sum_probs=28.3
Q ss_pred CeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechH
Q 024872 141 ELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGT 196 (261)
Q Consensus 141 ~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt 196 (261)
+-++++++.. ...=..+..++.+.+..+.+.... ..++.+..+.||++|+..|.
T Consensus 158 Gk~vvViGrS-~iVG~Pla~lL~~~~atVt~chs~-t~~l~~~~~~ADIvI~AvG~ 211 (284)
T PRK14190 158 GKHVVVVGRS-NIVGKPVGQLLLNENATVTYCHSK-TKNLAELTKQADILIVAVGK 211 (284)
T ss_pred CCEEEEECCC-CccHHHHHHHHHHCCCEEEEEeCC-chhHHHHHHhCCEEEEecCC
Confidence 4455555432 222222333443333334333221 34678888999999988764
No 336
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=25.96 E-value=3.8e+02 Score=22.15 Aligned_cols=12 Identities=17% Similarity=0.177 Sum_probs=9.6
Q ss_pred CcEEEEEcCCcH
Q 024872 107 ATVISLLPGSRL 118 (261)
Q Consensus 107 ~~vIlll~GSR~ 118 (261)
.+++++.|||.+
T Consensus 6 ~~~~lItG~s~~ 17 (247)
T PRK12935 6 GKVAIVTGGAKG 17 (247)
T ss_pred CCEEEEECCCCH
Confidence 357889998877
No 337
>PRK06172 short chain dehydrogenase; Provisional
Probab=25.90 E-value=3.9e+02 Score=22.23 Aligned_cols=12 Identities=17% Similarity=0.077 Sum_probs=9.3
Q ss_pred CcEEEEEcCCcH
Q 024872 107 ATVISLLPGSRL 118 (261)
Q Consensus 107 ~~vIlll~GSR~ 118 (261)
.+++++.|||.+
T Consensus 7 ~k~ilItGas~~ 18 (253)
T PRK06172 7 GKVALVTGGAAG 18 (253)
T ss_pred CCEEEEeCCCch
Confidence 357888988876
No 338
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=25.69 E-value=52 Score=25.46 Aligned_cols=46 Identities=13% Similarity=-0.016 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCCCEEEecCCCcchHHHH----HHHcceeEEechHHHH-HHHHc
Q 024872 156 NYITGLIQKWPVPSILVPGGSSNLKYDA----FSASRVALCTSGTVAV-ELQLA 204 (261)
Q Consensus 156 ~~l~~~~~~~~~~v~v~~g~~~~~~~~~----~~~aDl~i~~SGt~tl-Ea~~~ 204 (261)
.-+.+..+.++.++++++ .+++... ...||.+-..-|+... |++++
T Consensus 50 ~~L~~~A~~lg~pl~~~~---~~eL~~~~~~~~~~S~~v~~~~Gv~sVaEaaAl 100 (126)
T PRK07027 50 AGLLALCARHGWPLRAFS---AAQLAASEGALSGPSDAVRARVGVDGVAEPCAL 100 (126)
T ss_pred HHHHHHHHHhCCCeEEeC---HHHHHhccCCCCCcCHHHHHHhCCChHHHHHHH
Confidence 345666777787777764 2344332 3345554444465444 66654
No 339
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.41 E-value=3.1e+02 Score=24.50 Aligned_cols=20 Identities=5% Similarity=0.071 Sum_probs=14.2
Q ss_pred cchHHHHHHHcceeEEechH
Q 024872 177 SNLKYDAFSASRVALCTSGT 196 (261)
Q Consensus 177 ~~~~~~~~~~aDl~i~~SGt 196 (261)
..+..+..+.||++|+..|-
T Consensus 193 T~~l~~~~~~ADIvi~avG~ 212 (285)
T PRK10792 193 TKNLRHHVRNADLLVVAVGK 212 (285)
T ss_pred CCCHHHHHhhCCEEEEcCCC
Confidence 34677778888888877653
No 340
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=25.41 E-value=2.8e+02 Score=28.58 Aligned_cols=115 Identities=13% Similarity=0.074 Sum_probs=64.8
Q ss_pred hcCC--CCCCcEEEEEcCCcHHHHHhhHHHHHHHHH---HHhhhCCC-----eEEEEEeCCCcchH---HHHHH---HHh
Q 024872 100 KYSV--PSGATVISLLPGSRLQEVARMLPIFAKTVE---LLKDSFPE-----LITVIHVAPNRHVE---NYITG---LIQ 163 (261)
Q Consensus 100 ~l~l--~~~~~vIlll~GSR~~ei~~~~~~ll~a~~---~l~~~~~~-----~~~vi~~~~~~~~~---~~l~~---~~~ 163 (261)
+.|+ +++.-++.. --|-++-||-.-.++..+. +|.+ .|+ .+||+.|=..+.+. +.++. ..+
T Consensus 521 ~~g~~ldp~slfdvq--~KR~heYKRq~LNil~ii~~y~~i~~-~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~ 597 (797)
T cd04300 521 TTGVEVDPDSLFDVQ--VKRIHEYKRQLLNVLHIIHLYNRIKE-NPNADIVPRTFIFGGKAAPGYYMAKLIIKLINAVAD 597 (797)
T ss_pred HhCCccCCCccEEEE--eeechhhhhhhhHHHhhHHHHHHHHh-CCCcCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHH
Confidence 4454 445444444 4888888884332444433 3433 332 56666552222221 11111 111
Q ss_pred ----c--CC--CCEEEecCCCcchHHHHHHHcceeEEe-------chHHHHHHHHcCCCEEEEEcCChH
Q 024872 164 ----K--WP--VPSILVPGGSSNLKYDAFSASRVALCT-------SGTVAVELQLARLPCVVAYRAHFL 217 (261)
Q Consensus 164 ----~--~~--~~v~v~~g~~~~~~~~~~~~aDl~i~~-------SGt~tlEa~~~G~P~Vv~~~~~~~ 217 (261)
+ .+ +++.+++.|-..--..++.+||+-.-- |||+..=+|+-|.+.+-+..+.+.
T Consensus 598 ~in~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanv 666 (797)
T cd04300 598 VVNNDPDVGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANV 666 (797)
T ss_pred HhccChhcCCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhH
Confidence 0 11 146677776444567789999987653 599999999999999876555443
No 341
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=25.36 E-value=1.6e+02 Score=25.50 Aligned_cols=63 Identities=11% Similarity=0.104 Sum_probs=42.9
Q ss_pred HcceeEEec--hHHHH-HHHHcCCCEEEEEcCChHHHHHH-HhcccCCccchhhhhcCCCCcccccC
Q 024872 186 ASRVALCTS--GTVAV-ELQLARLPCVVAYRAHFLTEWFI-RYKAKIPYISLPNILLDSPIIPEALL 248 (261)
Q Consensus 186 ~aDl~i~~S--Gt~tl-Ea~~~G~P~Vv~~~~~~~~~~ia-~~~~~~~~~~l~Nil~~~~i~pE~lq 248 (261)
--|.+++-- ++.++ +|..-=+|-|+-...+...+-+. ..++-.|.++-|-...+..|=+.|+.
T Consensus 131 IGDyVLtGGEl~AmvliDav~RlipGVlg~~~S~e~dSF~~~gLLe~P~YTRP~~~~g~~VP~VLlS 197 (240)
T COG0336 131 IGDYVLTGGELAAMVLIDAVVRLIPGVLGNEESLEEDSFENNGLLEYPHYTRPREFEGMKVPEVLLS 197 (240)
T ss_pred eccEEecCccHHHHHHHHHHHHhcccccCCcccccccccccCCccCCCCcCChhhcCCCcCChhhhc
Confidence 445555432 35566 99999999998555666555555 36777888898888887665444544
No 342
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=25.24 E-value=63 Score=28.34 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=16.4
Q ss_pred echHH--HHHHHHcCCCEEEEE
Q 024872 193 TSGTV--AVELQLARLPCVVAY 212 (261)
Q Consensus 193 ~SGt~--tlEa~~~G~P~Vv~~ 212 (261)
-|||+ ++|++.+|+|.|.+.
T Consensus 103 ySGTVaaA~Ea~~~GipsIA~S 124 (252)
T COG0496 103 YSGTVAAAMEAALLGIPAIAIS 124 (252)
T ss_pred eeehHHHHHHHHHcCccceeee
Confidence 45885 569999999999775
No 343
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=25.19 E-value=5.3e+02 Score=23.57 Aligned_cols=74 Identities=15% Similarity=0.111 Sum_probs=43.7
Q ss_pred HHHHHHHHhhhCC-CeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEec------h---HH
Q 024872 128 FAKTVELLKDSFP-ELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTS------G---TV 197 (261)
Q Consensus 128 ll~a~~~l~~~~~-~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~S------G---t~ 197 (261)
.++++..+ + +++++-+++.+. +..++..++++.+ .. .+..++++..|+++... + -.
T Consensus 17 h~~al~~~----~~~~eLvaV~d~~~---erA~~~A~~~gi~--~y-----~~~eell~d~Di~~V~ipt~~P~~~H~e~ 82 (343)
T TIGR01761 17 YLAAFAAA----PERFELAGILAQGS---ERSRALAHRLGVP--LY-----CEVEELPDDIDIACVVVRSAIVGGQGSAL 82 (343)
T ss_pred HHHHHHhC----CCCcEEEEEEcCCH---HHHHHHHHHhCCC--cc-----CCHHHHhcCCCEEEEEeCCCCCCccHHHH
Confidence 44454443 4 788888888653 3345556666643 22 25667776555554432 1 25
Q ss_pred HHHHHHcCCCEEEEEcCC
Q 024872 198 AVELQLARLPCVVAYRAH 215 (261)
Q Consensus 198 tlEa~~~G~P~Vv~~~~~ 215 (261)
+.+|+..|+.+++=-+..
T Consensus 83 a~~aL~aGkHVL~EKPla 100 (343)
T TIGR01761 83 ARALLARGIHVLQEHPLH 100 (343)
T ss_pred HHHHHhCCCeEEEcCCCC
Confidence 669999999977534454
No 344
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.17 E-value=3.2e+02 Score=24.45 Aligned_cols=19 Identities=11% Similarity=-0.013 Sum_probs=14.4
Q ss_pred chHHHHHHHcceeEEechH
Q 024872 178 NLKYDAFSASRVALCTSGT 196 (261)
Q Consensus 178 ~~~~~~~~~aDl~i~~SGt 196 (261)
.++.+..+.||++|+..|-
T Consensus 190 ~~l~~~~~~ADIvIsAvGk 208 (287)
T PRK14173 190 QDLPAVTRRADVLVVAVGR 208 (287)
T ss_pred CCHHHHHhhCCEEEEecCC
Confidence 4677788888888887764
No 345
>PRK06194 hypothetical protein; Provisional
Probab=25.17 E-value=4.3e+02 Score=22.50 Aligned_cols=78 Identities=6% Similarity=-0.057 Sum_probs=37.6
Q ss_pred cEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCC--cchHHHHHH
Q 024872 108 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGS--SNLKYDAFS 185 (261)
Q Consensus 108 ~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~--~~~~~~~~~ 185 (261)
+++++.|||.+ +... .+++|.+ .+.++++.. .+.+..+.....+...+.++.++.+.+ .+++.+++.
T Consensus 7 k~vlVtGasgg--IG~~------la~~l~~--~G~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~ 75 (287)
T PRK06194 7 KVAVITGAASG--FGLA------FARIGAA--LGMKLVLAD-VQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALAD 75 (287)
T ss_pred CEEEEeCCccH--HHHH------HHHHHHH--CCCEEEEEe-CChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 46889999877 4331 2334444 256665543 322211112222222233344443332 224555555
Q ss_pred H-------cceeEEechH
Q 024872 186 A-------SRVALCTSGT 196 (261)
Q Consensus 186 ~-------aDl~i~~SGt 196 (261)
. .|++|..+|.
T Consensus 76 ~~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 76 AALERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 4 4999887763
No 346
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.08 E-value=3.4e+02 Score=24.22 Aligned_cols=20 Identities=5% Similarity=0.051 Sum_probs=14.8
Q ss_pred cchHHHHHHHcceeEEechH
Q 024872 177 SNLKYDAFSASRVALCTSGT 196 (261)
Q Consensus 177 ~~~~~~~~~~aDl~i~~SGt 196 (261)
..+..++.+.||++|+..|-
T Consensus 190 T~~l~~~~~~ADIvI~AvG~ 209 (282)
T PRK14169 190 TRNLKQLTKEADILVVAVGV 209 (282)
T ss_pred CCCHHHHHhhCCEEEEccCC
Confidence 34677888888888887763
No 347
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=24.84 E-value=2.1e+02 Score=19.90 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=20.8
Q ss_pred HHHHcceeEEechH----HHHHHHHcCCCEEE
Q 024872 183 AFSASRVALCTSGT----VAVELQLARLPCVV 210 (261)
Q Consensus 183 ~~~~aDl~i~~SGt----~tlEa~~~G~P~Vv 210 (261)
.+..+--+|+..|+ +++-|-.+|+|+|+
T Consensus 27 ~~~~~~Giv~~~Gg~~SH~aIlAr~~giP~iv 58 (80)
T PF00391_consen 27 DLQRVAGIVTEEGGPTSHAAILARELGIPAIV 58 (80)
T ss_dssp HHTTSSEEEESSSSTTSHHHHHHHHTT-EEEE
T ss_pred chhheEEEEEEcCCccchHHHHHHHcCCCEEE
Confidence 56677777777765 56679999999996
No 348
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.80 E-value=3.3e+02 Score=24.26 Aligned_cols=54 Identities=9% Similarity=-0.065 Sum_probs=29.5
Q ss_pred CeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechH
Q 024872 141 ELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGT 196 (261)
Q Consensus 141 ~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt 196 (261)
+-++++++- +...=.-+..++.+.+..+.+..-. ..+..+..+.||++|+..|-
T Consensus 157 Gk~vvVvGr-S~iVGkPla~lL~~~~atVt~chs~-T~nl~~~~~~ADIvIsAvGk 210 (282)
T PRK14166 157 GKDAVIIGA-SNIVGRPMATMLLNAGATVSVCHIK-TKDLSLYTRQADLIIVAAGC 210 (282)
T ss_pred CCEEEEECC-CCcchHHHHHHHHHCCCEEEEeCCC-CCCHHHHHhhCCEEEEcCCC
Confidence 445565543 3322223344443333334433222 45788899999999988764
No 349
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=24.78 E-value=4.2e+02 Score=22.23 Aligned_cols=12 Identities=25% Similarity=0.285 Sum_probs=9.6
Q ss_pred CcEEEEEcCCcH
Q 024872 107 ATVISLLPGSRL 118 (261)
Q Consensus 107 ~~vIlll~GSR~ 118 (261)
.+++++.|||++
T Consensus 7 ~k~~lItGa~~g 18 (261)
T PRK08936 7 GKVVVITGGSTG 18 (261)
T ss_pred CCEEEEeCCCCh
Confidence 457888999887
No 350
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.77 E-value=3.3e+02 Score=24.51 Aligned_cols=19 Identities=5% Similarity=0.051 Sum_probs=13.2
Q ss_pred chHHHHHHHcceeEEechH
Q 024872 178 NLKYDAFSASRVALCTSGT 196 (261)
Q Consensus 178 ~~~~~~~~~aDl~i~~SGt 196 (261)
.+..++.+.||++|+..|-
T Consensus 193 ~~l~~~~~~ADIvIsAvGk 211 (297)
T PRK14186 193 QDLASITREADILVAAAGR 211 (297)
T ss_pred CCHHHHHhhCCEEEEccCC
Confidence 4567777777877776653
No 351
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.71 E-value=3.4e+02 Score=24.21 Aligned_cols=19 Identities=5% Similarity=0.043 Sum_probs=14.9
Q ss_pred chHHHHHHHcceeEEechH
Q 024872 178 NLKYDAFSASRVALCTSGT 196 (261)
Q Consensus 178 ~~~~~~~~~aDl~i~~SGt 196 (261)
.++.++.+.||++|+..|-
T Consensus 192 ~~l~~~~~~ADIvI~AvG~ 210 (284)
T PRK14170 192 KDLPQVAKEADILVVATGL 210 (284)
T ss_pred CCHHHHHhhCCEEEEecCC
Confidence 4678888888888887764
No 352
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.61 E-value=2.1e+02 Score=25.50 Aligned_cols=54 Identities=4% Similarity=-0.007 Sum_probs=28.6
Q ss_pred CeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechH
Q 024872 141 ELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGT 196 (261)
Q Consensus 141 ~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt 196 (261)
+-++++++.. ...=.-+..++.+.+..+.+..-. ..+..+..+.||++|+..|-
T Consensus 157 Gk~vvViGrS-~iVGkPla~lL~~~~AtVtichs~-T~nl~~~~~~ADIvI~AvGk 210 (282)
T PRK14182 157 GKRALVVGRS-NIVGKPMAMMLLERHATVTIAHSR-TADLAGEVGRADILVAAIGK 210 (282)
T ss_pred CCEEEEECCC-CcchHHHHHHHHHCCCEEEEeCCC-CCCHHHHHhhCCEEEEecCC
Confidence 4455555443 222222344443333334433222 34678888899999988764
No 353
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.57 E-value=4.8e+02 Score=22.83 Aligned_cols=13 Identities=8% Similarity=-0.046 Sum_probs=10.4
Q ss_pred CCcEEEEEcCCcH
Q 024872 106 GATVISLLPGSRL 118 (261)
Q Consensus 106 ~~~vIlll~GSR~ 118 (261)
+.+++++.|||++
T Consensus 11 ~~k~~lVTGas~g 23 (306)
T PRK07792 11 SGKVAVVTGAAAG 23 (306)
T ss_pred CCCEEEEECCCCh
Confidence 4468999999987
No 354
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=24.46 E-value=5.4e+02 Score=23.42 Aligned_cols=82 Identities=10% Similarity=0.029 Sum_probs=43.3
Q ss_pred HhhcCCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHH----HHHHhcCCCCEEEec
Q 024872 98 KNKYSVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYI----TGLIQKWPVPSILVP 173 (261)
Q Consensus 98 r~~l~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l----~~~~~~~~~~v~v~~ 173 (261)
++++|- -+...|+++|..+.. ....++.++..+ +..+.+++.+.....+.+ +...+..+..+.+.
T Consensus 147 ~e~~g~-l~g~~va~vGd~~~~----v~~Sl~~~~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~- 215 (331)
T PRK02102 147 KEHFGP-LKGLKLAYVGDGRNN----MANSLMVGGAKL-----GMDVRICAPKELWPEEELVALAREIAKETGAKITIT- 215 (331)
T ss_pred HHHhCC-CCCCEEEEECCCccc----HHHHHHHHHHHc-----CCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEE-
Confidence 445552 244567888664321 122344444333 467776665432211111 22333345445443
Q ss_pred CCCcchHHHHHHHcceeEEec
Q 024872 174 GGSSNLKYDAFSASRVALCTS 194 (261)
Q Consensus 174 g~~~~~~~~~~~~aDl~i~~S 194 (261)
+++.+++..||++.+..
T Consensus 216 ----~d~~ea~~~aDvvyt~~ 232 (331)
T PRK02102 216 ----EDPEEAVKGADVIYTDV 232 (331)
T ss_pred ----cCHHHHhCCCCEEEEcC
Confidence 37889999999999964
No 355
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=24.22 E-value=5e+02 Score=22.94 Aligned_cols=88 Identities=19% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhCCC----eEEEEEeCCCcchHHHHHHHHhcCCCCE---EEecCCCcchHHHHHHHcceeEEec-hH
Q 024872 125 LPIFAKTVELLKDSFPE----LITVIHVAPNRHVENYITGLIQKWPVPS---ILVPGGSSNLKYDAFSASRVALCTS-GT 196 (261)
Q Consensus 125 ~~~ll~a~~~l~~~~~~----~~~vi~~~~~~~~~~~l~~~~~~~~~~v---~v~~g~~~~~~~~~~~~aDl~i~~S-Gt 196 (261)
+-.++.++.+|+++.|. +++-++++.+....+..-+-++.|++.+ .++.|- +...++++-.-=|--- ..
T Consensus 166 ~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah~RvI~TLr~Wgv~vDEafFLgG~---~K~~vL~~~~phIFFDDQ~ 242 (264)
T PF06189_consen 166 FKDFLKKLSKLQKKFPPENSPIRTALVTARSAPAHERVIRTLRSWGVRVDEAFFLGGL---PKGPVLKAFRPHIFFDDQD 242 (264)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCchhHHHHHHHHHcCCcHhHHHHhCCC---chhHHHHhhCCCEeecCch
Q ss_pred HHHHHHHcCCCEE-EEEcCC
Q 024872 197 VAVELQLARLPCV-VAYRAH 215 (261)
Q Consensus 197 ~tlEa~~~G~P~V-v~~~~~ 215 (261)
.-+|.++.++|+. |.|...
T Consensus 243 ~H~~~a~~~vps~hVP~gv~ 262 (264)
T PF06189_consen 243 GHLESASKVVPSGHVPYGVA 262 (264)
T ss_pred hhhhHhhcCCCEEeccCCcC
No 356
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.10 E-value=3.5e+02 Score=24.06 Aligned_cols=54 Identities=7% Similarity=0.022 Sum_probs=29.7
Q ss_pred CeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechH
Q 024872 141 ELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGT 196 (261)
Q Consensus 141 ~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt 196 (261)
+-++++++.. ...=.-+..++.+.+..+.+..-. ..++.++.+.||++|+..|-
T Consensus 158 Gk~vvViGrS-~~VGkPla~lL~~~~AtVt~chs~-T~~l~~~~~~ADIvIsAvGk 211 (278)
T PRK14172 158 GKEVVVIGRS-NIVGKPVAQLLLNENATVTICHSK-TKNLKEVCKKADILVVAIGR 211 (278)
T ss_pred CCEEEEECCC-ccchHHHHHHHHHCCCEEEEeCCC-CCCHHHHHhhCCEEEEcCCC
Confidence 4455555543 222223444444333334443222 34788899999999988774
No 357
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=24.03 E-value=2.2e+02 Score=18.83 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=17.3
Q ss_pred HHHHcceeEEechHHHHHHHHcCCCEEEEE
Q 024872 183 AFSASRVALCTSGTVAVELQLARLPCVVAY 212 (261)
Q Consensus 183 ~~~~aDl~i~~SGt~tlEa~~~G~P~Vv~~ 212 (261)
.....|++++.+-.. .-..++|++.+.
T Consensus 43 ~~~~~dliitt~~~~---~~~~~~p~~~i~ 69 (84)
T cd00133 43 DLADADLIISTVPLA---ARFLGKPVIVVS 69 (84)
T ss_pred hcCCccEEEECCccc---cccCCCcEEEEc
Confidence 456778888777532 345678877653
No 358
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=24.01 E-value=4.8e+02 Score=22.63 Aligned_cols=63 Identities=6% Similarity=-0.127 Sum_probs=38.0
Q ss_pred CeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechH-----HHHHHHHcCCCEEEEEc
Q 024872 141 ELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGT-----VAVELQLARLPCVVAYR 213 (261)
Q Consensus 141 ~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt-----~tlEa~~~G~P~Vv~~~ 213 (261)
+++++.+++.+. +..+...++.+. ... ++..+++..+|+++-.++. .+.+++..|+.+++...
T Consensus 26 ~~elv~v~d~~~---~~a~~~a~~~~~--~~~-----~~~~ell~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~s~ 93 (265)
T PRK13304 26 NAELYAFYDRNL---EKAENLASKTGA--KAC-----LSIDELVEDVDLVVECASVNAVEEVVPKSLENGKDVIIMSV 93 (265)
T ss_pred CeEEEEEECCCH---HHHHHHHHhcCC--eeE-----CCHHHHhcCCCEEEEcCChHHHHHHHHHHHHcCCCEEEEch
Confidence 677777777643 223333343332 222 2456666889999877653 23467788999877543
No 359
>PRK08339 short chain dehydrogenase; Provisional
Probab=23.89 E-value=4.5e+02 Score=22.29 Aligned_cols=31 Identities=6% Similarity=0.011 Sum_probs=18.4
Q ss_pred CcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEE
Q 024872 107 ATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIH 147 (261)
Q Consensus 107 ~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~ 147 (261)
.+++++.|||++ +.+ ..++.|.+ .+.++++.
T Consensus 8 ~k~~lItGas~g--IG~------aia~~l~~--~G~~V~~~ 38 (263)
T PRK08339 8 GKLAFTTASSKG--IGF------GVARVLAR--AGADVILL 38 (263)
T ss_pred CCEEEEeCCCCc--HHH------HHHHHHHH--CCCEEEEE
Confidence 468899999987 432 12334444 35665554
No 360
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=23.88 E-value=3.9e+02 Score=23.61 Aligned_cols=12 Identities=25% Similarity=0.246 Sum_probs=9.3
Q ss_pred HcceeEEechHH
Q 024872 186 ASRVALCTSGTV 197 (261)
Q Consensus 186 ~aDl~i~~SGt~ 197 (261)
..|++|=.||..
T Consensus 209 ~pDLlIRTSGe~ 220 (271)
T KOG1602|consen 209 HPDLLIRTSGED 220 (271)
T ss_pred CCCEEEEcCCcc
Confidence 568888888863
No 361
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=23.84 E-value=5.1e+02 Score=25.66 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=13.9
Q ss_pred chHHHHHHHcceeEEech
Q 024872 178 NLKYDAFSASRVALCTSG 195 (261)
Q Consensus 178 ~~~~~~~~~aDl~i~~SG 195 (261)
+++.+.+..+|++|...|
T Consensus 151 esI~~aLggiDiVVn~AG 168 (576)
T PLN03209 151 DQIGPALGNASVVICCIG 168 (576)
T ss_pred HHHHHHhcCCCEEEEccc
Confidence 356677888999998775
No 362
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=23.79 E-value=2e+02 Score=23.27 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=18.3
Q ss_pred HHHHHcCCCEEEEEcCChHHHHH
Q 024872 199 VELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 199 lEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
.|+++.|+|+++.-+...+..|.
T Consensus 117 ~~A~~~giPVLt~V~~~~l~~W~ 139 (159)
T PF10649_consen 117 AAALAAGIPVLTAVPPRNLEAWR 139 (159)
T ss_pred HHHHHCCCCEEEEECHHHHHHHH
Confidence 39999999999876666666665
No 363
>PRK07102 short chain dehydrogenase; Provisional
Probab=23.72 E-value=4.2e+02 Score=21.89 Aligned_cols=10 Identities=10% Similarity=0.069 Sum_probs=7.5
Q ss_pred EEEEEcCCcH
Q 024872 109 VISLLPGSRL 118 (261)
Q Consensus 109 vIlll~GSR~ 118 (261)
++++.|||.+
T Consensus 3 ~vlItGas~g 12 (243)
T PRK07102 3 KILIIGATSD 12 (243)
T ss_pred EEEEEcCCcH
Confidence 5778888776
No 364
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=23.62 E-value=4.5e+02 Score=22.51 Aligned_cols=62 Identities=6% Similarity=-0.040 Sum_probs=38.2
Q ss_pred eEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHH-HHcceeEEechH-----HHHHHHHcCCCEEEEEc
Q 024872 142 LITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAF-SASRVALCTSGT-----VAVELQLARLPCVVAYR 213 (261)
Q Consensus 142 ~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~-~~aDl~i~~SGt-----~tlEa~~~G~P~Vv~~~ 213 (261)
++++.+++.+. +..+...+.++. .+.. +..+++ ...|+++-.+++ .+++++..|+++++...
T Consensus 2 ~eLvaV~D~~~---e~a~~~a~~~g~--~~~~-----d~~eLl~~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~ 69 (229)
T TIGR03855 2 FEIAAVYDRNP---KDAKELAERCGA--KIVS-----DFDEFLPEDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSV 69 (229)
T ss_pred eEEEEEECCCH---HHHHHHHHHhCC--ceEC-----CHHHHhcCCCCEEEECCChHHHHHHHHHHHHCCCCEEEECC
Confidence 56777777643 234444555542 2232 344444 468999888876 35588899999887433
No 365
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.50 E-value=6.3e+02 Score=23.80 Aligned_cols=78 Identities=5% Similarity=-0.007 Sum_probs=35.6
Q ss_pred CCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHH
Q 024872 102 SVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKY 181 (261)
Q Consensus 102 ~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~ 181 (261)
+.+...+.++++|++... + +++..|.+ .+.++.+.-..+......+.+.+++.+. .+..+.. ..
T Consensus 11 ~~~~~~~~v~viG~G~~G--------~-~~A~~L~~--~G~~V~~~d~~~~~~~~~~~~~l~~~gv--~~~~~~~-~~-- 74 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSG--------F-AAADALLE--LGARVTVVDDGDDERHRALAAILEALGA--TVRLGPG-PT-- 74 (480)
T ss_pred ccCcCCCEEEEECCCHHH--------H-HHHHHHHH--CCCEEEEEeCCchhhhHHHHHHHHHcCC--EEEECCC-cc--
Confidence 334344567878775432 1 13334443 2456444432221111223334455553 3333321 11
Q ss_pred HHHHHcceeEEechH
Q 024872 182 DAFSASRVALCTSGT 196 (261)
Q Consensus 182 ~~~~~aDl~i~~SGt 196 (261)
....+|++|..+|.
T Consensus 75 -~~~~~D~Vv~s~Gi 88 (480)
T PRK01438 75 -LPEDTDLVVTSPGW 88 (480)
T ss_pred -ccCCCCEEEECCCc
Confidence 34468999988874
No 366
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.28 E-value=3.7e+02 Score=23.98 Aligned_cols=54 Identities=7% Similarity=0.006 Sum_probs=29.1
Q ss_pred CeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechH
Q 024872 141 ELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGT 196 (261)
Q Consensus 141 ~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt 196 (261)
+-++++++-. ...=.-+..++.+.+..+.+..-. ..++.+..+.||++|+..|-
T Consensus 159 Gk~vvViGrS-~iVGkPla~lL~~~~atVt~chs~-T~~l~~~~~~ADIvIsAvGk 212 (284)
T PRK14177 159 GKNAVVVGRS-PILGKPMAMLLTEMNATVTLCHSK-TQNLPSIVRQADIIVGAVGK 212 (284)
T ss_pred CCEEEEECCC-CcchHHHHHHHHHCCCEEEEeCCC-CCCHHHHHhhCCEEEEeCCC
Confidence 3455555433 222223444444333334443222 35788889999999987764
No 367
>PRK12937 short chain dehydrogenase; Provisional
Probab=23.27 E-value=4.2e+02 Score=21.74 Aligned_cols=12 Identities=25% Similarity=0.072 Sum_probs=9.0
Q ss_pred CcEEEEEcCCcH
Q 024872 107 ATVISLLPGSRL 118 (261)
Q Consensus 107 ~~vIlll~GSR~ 118 (261)
.+++++.||+.+
T Consensus 5 ~~~vlItG~~~~ 16 (245)
T PRK12937 5 NKVAIVTGASRG 16 (245)
T ss_pred CCEEEEeCCCch
Confidence 357888988776
No 368
>PRK05855 short chain dehydrogenase; Validated
Probab=23.25 E-value=5.8e+02 Score=24.14 Aligned_cols=79 Identities=8% Similarity=-0.002 Sum_probs=37.1
Q ss_pred CCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCC--cchHHHH
Q 024872 106 GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGS--SNLKYDA 183 (261)
Q Consensus 106 ~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~--~~~~~~~ 183 (261)
...++++.|||.+ +.. ..+++|.+ .+.++++. +.+..-.+.+...++..+.++.++...+ .+.+.++
T Consensus 314 ~~~~~lv~G~s~g--iG~------~~a~~l~~--~G~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~ 382 (582)
T PRK05855 314 SGKLVVVTGAGSG--IGR------ETALAFAR--EGAEVVAS-DIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAF 382 (582)
T ss_pred CCCEEEEECCcCH--HHH------HHHHHHHH--CCCEEEEE-eCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence 3467899999887 433 12334444 35665444 4433211222222332232343332221 1234444
Q ss_pred HHH-------cceeEEech
Q 024872 184 FSA-------SRVALCTSG 195 (261)
Q Consensus 184 ~~~-------aDl~i~~SG 195 (261)
... -|++|-.+|
T Consensus 383 ~~~~~~~~g~id~lv~~Ag 401 (582)
T PRK05855 383 AEWVRAEHGVPDIVVNNAG 401 (582)
T ss_pred HHHHHHhcCCCcEEEECCc
Confidence 443 488887775
No 369
>PRK11564 stationary phase inducible protein CsiE; Provisional
Probab=23.13 E-value=1.7e+02 Score=27.30 Aligned_cols=70 Identities=16% Similarity=0.081 Sum_probs=34.2
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHhcCC-CCEEEecCCCcchHHHH-H-HHcceeEEechHHHHHHHHcCCCEEEEEc
Q 024872 140 PELITVIHVAPNRHVENYITGLIQKWP-VPSILVPGGSSNLKYDA-F-SASRVALCTSGTVAVELQLARLPCVVAYR 213 (261)
Q Consensus 140 ~~~~~vi~~~~~~~~~~~l~~~~~~~~-~~v~v~~g~~~~~~~~~-~-~~aDl~i~~SGt~tlEa~~~G~P~Vv~~~ 213 (261)
...+++++|+........++..+++.- .++.+. .....+.... . ...|+++| |+|+..-..++|++++.+
T Consensus 337 ~~~~vlvVC~~G~~~~~~L~~~l~~~~~~~~~i~-~~s~~~~~~~~~~~~~DlIiS---t~t~~l~~~~~pvi~V~p 409 (426)
T PRK11564 337 HEKQILLLTGDNPELEAQIEQQLRELTLLPLNIK-YLSVKAFQQSGAPRGVALIIT---PYATPLPLFSPPLIHADL 409 (426)
T ss_pred ccceEEEEeCCCHHHHHHHHHHhhhceecccccc-cccHHHHHhccCCCCCcEEEe---cCCCCcccCCCCeEEecC
Confidence 346888888754333344544444321 011111 1111223222 1 26899998 344333345789887654
No 370
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=22.66 E-value=5.6e+02 Score=23.42 Aligned_cols=86 Identities=16% Similarity=0.225 Sum_probs=45.1
Q ss_pred HHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCC----cchHHHHHH-----Hcc--eeEEech----HHH
Q 024872 134 LLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGS----SNLKYDAFS-----ASR--VALCTSG----TVA 198 (261)
Q Consensus 134 ~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~----~~~~~~~~~-----~aD--l~i~~SG----t~t 198 (261)
++.+..||.. +++||+. ..-...+..+++.|..+.-+.|.- .+.....|+ +.+ -+|..+| ..+
T Consensus 70 eI~~lnpd~V-LIIGGp~-AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~GwDy~~~~ 147 (337)
T COG2247 70 EIIELNPDLV-LIIGGPI-AVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVYGWDYADAL 147 (337)
T ss_pred HHHhhCCceE-EEECCCC-cCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEeccccHHHH
Confidence 4555567754 4445543 222234555666776554444421 112344444 455 4455554 355
Q ss_pred HHHHHcCCCEEEEEcCChHHHHH
Q 024872 199 VELQLARLPCVVAYRAHFLTEWF 221 (261)
Q Consensus 199 lEa~~~G~P~Vv~~~~~~~~~~i 221 (261)
.|+|--|+=-|++.+++-.-.|.
T Consensus 148 ~e~~k~~~~p~~~~n~~~~~~~~ 170 (337)
T COG2247 148 MELMKEGIVPVILKNTSILVRWS 170 (337)
T ss_pred HHHHhcCcceeEecccccccccc
Confidence 59999987666666665544444
No 371
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=22.63 E-value=7e+02 Score=24.04 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=25.9
Q ss_pred HHHHHHcceeEEec-----------hH----HHHHHHHcCCCEEEEEcCChH
Q 024872 181 YDAFSASRVALCTS-----------GT----VAVELQLARLPCVVAYRAHFL 217 (261)
Q Consensus 181 ~~~~~~aDl~i~~S-----------Gt----~tlEa~~~G~P~Vv~~~~~~~ 217 (261)
.++-+.+|++|..+ |. .+.=+++.+.|++++..+++.
T Consensus 141 i~la~~aD~~vVAPATANTIAKiA~GiADnLlt~v~La~~~PvliaPaMN~~ 192 (475)
T PRK13982 141 IRLARDCDLIVVAPATADLMAKMANGLADDLASAILLAANRPILLAPAMNPL 192 (475)
T ss_pred hhhhhhcCEEEEeeCCHHHHHHHHccccCcHHHHHHHhcCCCEEEEEcCCHH
Confidence 35567899888765 21 122356779999999988876
No 372
>PLN02825 amino-acid N-acetyltransferase
Probab=22.32 E-value=2.2e+02 Score=27.71 Aligned_cols=61 Identities=16% Similarity=0.216 Sum_probs=37.6
Q ss_pred CCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecC
Q 024872 106 GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPG 174 (261)
Q Consensus 106 ~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g 174 (261)
++++|+-+||+-... ..++.+..-+..|... ++++|++-|+.+. +.+.+++.++..++..|
T Consensus 17 gktfVIk~gG~~l~~--~~~~~l~~DialL~~l--Gi~~VlVHGggpq----I~~~l~~~gi~~~f~~G 77 (515)
T PLN02825 17 GSTFVVVISGEVVAG--PHLDNILQDISLLHGL--GIKFVLVPGTHVQ----IDKLLAERGREPKYVGA 77 (515)
T ss_pred CCEEEEEECchhhcC--chHHHHHHHHHHHHHC--CCCEEEEcCCCHH----HHHHHHHcCCCceeeCC
Confidence 667788888876532 2345676777777653 6777777666543 44555555655555544
No 373
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.14 E-value=4.6e+02 Score=21.74 Aligned_cols=31 Identities=16% Similarity=0.089 Sum_probs=17.3
Q ss_pred cEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEe
Q 024872 108 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHV 148 (261)
Q Consensus 108 ~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~ 148 (261)
+++++.|||.+ +.. ..+..|.++ +.++++.+
T Consensus 3 k~vlItG~sg~--iG~------~la~~L~~~--g~~vi~~~ 33 (256)
T PRK12745 3 PVALVTGGRRG--IGL------GIARALAAA--GFDLAIND 33 (256)
T ss_pred cEEEEeCCCch--HHH------HHHHHHHHC--CCEEEEEe
Confidence 46888888876 332 123344443 55666554
No 374
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=22.14 E-value=1.4e+02 Score=24.95 Aligned_cols=33 Identities=27% Similarity=0.519 Sum_probs=21.7
Q ss_pred EEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCC
Q 024872 109 VISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPN 151 (261)
Q Consensus 109 vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~ 151 (261)
-|.++|.|+|+|+. ++ +...+|+++.|+...++
T Consensus 23 ~Igi~G~SkGaelA-----Ll-----lAs~~~~i~avVa~~ps 55 (213)
T PF08840_consen 23 KIGIIGISKGAELA-----LL-----LASRFPQISAVVAISPS 55 (213)
T ss_dssp SEEEEEETHHHHHH-----HH-----HHHHSSSEEEEEEES--
T ss_pred CEEEEEECHHHHHH-----HH-----HHhcCCCccEEEEeCCc
Confidence 48889999999853 11 22345788888776653
No 375
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=22.06 E-value=6e+02 Score=23.09 Aligned_cols=75 Identities=4% Similarity=0.005 Sum_probs=40.5
Q ss_pred CCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchH-HHH---HHHHhcCCCCEEEecCCCcchHH
Q 024872 106 GATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVE-NYI---TGLIQKWPVPSILVPGGSSNLKY 181 (261)
Q Consensus 106 ~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~-~~l---~~~~~~~~~~v~v~~g~~~~~~~ 181 (261)
+...|+++|-.+. +....++.++..+ ++.+.+++.+..... +.+ ++..+..+..+.+. +++.
T Consensus 154 ~g~kia~vGD~~~----~v~~Sl~~~~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~d~~ 219 (332)
T PRK04284 154 KDIKFTYVGDGRN----NVANALMQGAAIM-----GMDFHLVCPKELNPDDELLNKCKEIAAETGGKITIT-----DDID 219 (332)
T ss_pred CCcEEEEecCCCc----chHHHHHHHHHHc-----CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE-----cCHH
Confidence 4456888865322 1122344444332 577777665422111 112 22333445455543 3788
Q ss_pred HHHHHcceeEEec
Q 024872 182 DAFSASRVALCTS 194 (261)
Q Consensus 182 ~~~~~aDl~i~~S 194 (261)
+++..||++.+.+
T Consensus 220 ea~~~aDvvy~~~ 232 (332)
T PRK04284 220 EGVKGSDVIYTDV 232 (332)
T ss_pred HHhCCCCEEEECC
Confidence 9999999999974
No 376
>COG1204 Superfamily II helicase [General function prediction only]
Probab=22.03 E-value=3.3e+02 Score=27.96 Aligned_cols=106 Identities=14% Similarity=0.107 Sum_probs=58.4
Q ss_pred CCCCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcch-HHHHHHH--HhcCCCCEEEecCCCcc
Q 024872 102 SVPSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHV-ENYITGL--IQKWPVPSILVPGGSSN 178 (261)
Q Consensus 102 ~l~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~-~~~l~~~--~~~~~~~v~v~~g~~~~ 178 (261)
++.+++.+|+-.|=+-|.- + =.++..+..+.+. +.+.|.++.- ..+ .+..+++ ++.+|+++...+|. .+
T Consensus 43 ~~~~~~N~li~aPTgsGKT---l-IA~lai~~~l~~~--~~k~vYivPl-kALa~Ek~~~~~~~~~~GirV~~~TgD-~~ 114 (766)
T COG1204 43 GLLSDENVLISAPTGSGKT---L-IALLAILSTLLEG--GGKVVYIVPL-KALAEEKYEEFSRLEELGIRVGISTGD-YD 114 (766)
T ss_pred cccCCCcEEEEcCCCCchH---H-HHHHHHHHHHHhc--CCcEEEEeCh-HHHHHHHHHHhhhHHhcCCEEEEecCC-cc
Confidence 4455788888888666632 1 1244455555542 4566666642 111 1222222 24667778777775 34
Q ss_pred hHHHHHHHcceeEEec-----hHHHHHHHHcCCCEEEEEcCC
Q 024872 179 LKYDAFSASRVALCTS-----GTVAVELQLARLPCVVAYRAH 215 (261)
Q Consensus 179 ~~~~~~~~aDl~i~~S-----Gt~tlEa~~~G~P~Vv~~~~~ 215 (261)
.-++.+..+|++|+.+ ++---=...--+=+||++..+
T Consensus 115 ~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH 156 (766)
T COG1204 115 LDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIH 156 (766)
T ss_pred cchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeee
Confidence 4568899999999977 220000033445557776554
No 377
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=22.01 E-value=3.2e+02 Score=27.78 Aligned_cols=73 Identities=25% Similarity=0.225 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHH---------------------HhcCCCCEEEecCCCcchHHHHHH
Q 024872 127 IFAKTVELLKDSFPELITVIHVAPNRHVENYITGL---------------------IQKWPVPSILVPGGSSNLKYDAFS 185 (261)
Q Consensus 127 ~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~---------------------~~~~~~~v~v~~g~~~~~~~~~~~ 185 (261)
--.+++++|++ .++++++.+|.+....+.+.+. +++.+..+.++.+- .+|- -+++
T Consensus 541 ~a~~aI~~L~~--~Gi~~~mLTGDn~~~A~~iA~~lGId~v~AellPedK~~~V~~l~~~g~~VamVGDG-INDA-PALA 616 (713)
T COG2217 541 DAKEAIAALKA--LGIKVVMLTGDNRRTAEAIAKELGIDEVRAELLPEDKAEIVRELQAEGRKVAMVGDG-INDA-PALA 616 (713)
T ss_pred hHHHHHHHHHH--CCCeEEEEcCCCHHHHHHHHHHcChHhheccCCcHHHHHHHHHHHhcCCEEEEEeCC-chhH-HHHh
Confidence 45667778876 4788888888764321211110 11112235555332 5564 4789
Q ss_pred HcceeEEec-hH-HHHHHHH
Q 024872 186 ASRVALCTS-GT-VAVELQL 203 (261)
Q Consensus 186 ~aDl~i~~S-Gt-~tlEa~~ 203 (261)
+||+.|+.. || +++|++-
T Consensus 617 ~AdVGiAmG~GtDvA~eaAD 636 (713)
T COG2217 617 AADVGIAMGSGTDVAIEAAD 636 (713)
T ss_pred hcCeeEeecCCcHHHHHhCC
Confidence 999999987 45 4557764
No 378
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=21.98 E-value=3.3e+02 Score=20.06 Aligned_cols=16 Identities=19% Similarity=0.144 Sum_probs=12.5
Q ss_pred HHHHHcCCCeEEEcCC
Q 024872 54 AICRLNGLAATFVGHP 69 (261)
Q Consensus 54 ~~~~~~g~~~~~vG~P 69 (261)
.+++..|.++.+.|..
T Consensus 21 ~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 21 RALRDAGFEVIDLGVD 36 (119)
T ss_pred HHHHHCCCEEEECCCC
Confidence 4677889999888854
No 379
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=21.89 E-value=2.1e+02 Score=25.75 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=7.7
Q ss_pred HcCCCeEEEcCC
Q 024872 58 LNGLAATFVGHP 69 (261)
Q Consensus 58 ~~g~~~~~vG~P 69 (261)
+.|..++++|.+
T Consensus 111 ~~Gy~vvi~G~~ 122 (298)
T PRK01045 111 REGYEIILIGHK 122 (298)
T ss_pred hCCCEEEEEeCC
Confidence 456777777644
No 380
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=21.83 E-value=3.8e+02 Score=23.95 Aligned_cols=55 Identities=9% Similarity=-0.004 Sum_probs=31.7
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechH
Q 024872 140 PELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGT 196 (261)
Q Consensus 140 ~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt 196 (261)
.+.+.++++..+ -.=..+..++...+..+.+.--. ..+..++.+.||++|+.-|-
T Consensus 155 ~Gk~~vVVGrS~-iVGkPla~lL~~~naTVtvcHs~-T~~l~~~~k~ADIvv~AvG~ 209 (283)
T COG0190 155 RGKNVVVVGRSN-IVGKPLALLLLNANATVTVCHSR-TKDLASITKNADIVVVAVGK 209 (283)
T ss_pred CCCEEEEECCCC-cCcHHHHHHHHhCCCEEEEEcCC-CCCHHHHhhhCCEEEEecCC
Confidence 456777776543 22122344444434345444222 45788999999999987653
No 381
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.74 E-value=4e+02 Score=23.72 Aligned_cols=53 Identities=8% Similarity=0.055 Sum_probs=30.1
Q ss_pred CeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEech
Q 024872 141 ELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSG 195 (261)
Q Consensus 141 ~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SG 195 (261)
+-++++++.. ...-..+..++.+.+..+.+..-. ..++.+..+.||++|+..|
T Consensus 152 Gk~V~ViGrs-~~vGrpla~lL~~~~atVtv~hs~-t~~L~~~~~~ADIvI~Avg 204 (279)
T PRK14178 152 GKRAVVVGRS-IDVGRPMAALLLNADATVTICHSK-TENLKAELRQADILVSAAG 204 (279)
T ss_pred CCEEEEECCC-ccccHHHHHHHHhCCCeeEEEecC-hhHHHHHHhhCCEEEECCC
Confidence 4566665543 222222334444444444443221 3578889999999999887
No 382
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=21.70 E-value=1.9e+02 Score=25.97 Aligned_cols=52 Identities=12% Similarity=0.208 Sum_probs=24.5
Q ss_pred EEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechHHH
Q 024872 146 IHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVA 198 (261)
Q Consensus 146 i~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt~t 198 (261)
++|++|.+.-..|.+..++.+.+...++.. .+=-.+|+.....+=..||++|
T Consensus 218 VVG~~nSSNs~rL~eiA~~~g~~aylId~~-~ei~~~w~~~~~~VGvTAGASt 269 (294)
T COG0761 218 VVGSKNSSNSNRLAEIAKRHGKPAYLIDDA-EEIDPEWLKGVKTVGVTAGAST 269 (294)
T ss_pred EECCCCCccHHHHHHHHHHhCCCeEEeCCh-HhCCHHHhcCccEEEEecCCCC
Confidence 344444333344555566555443333321 1113667777555444666643
No 383
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=21.62 E-value=4.8e+02 Score=21.74 Aligned_cols=38 Identities=13% Similarity=0.027 Sum_probs=22.5
Q ss_pred HHHHHhcC-CCCEEEecCCCcchHHHHHHHcceeEEech
Q 024872 158 ITGLIQKW-PVPSILVPGGSSNLKYDAFSASRVALCTSG 195 (261)
Q Consensus 158 l~~~~~~~-~~~v~v~~g~~~~~~~~~~~~aDl~i~~SG 195 (261)
..+.+... +..+..+.-...++..+.+..||+++.+-|
T Consensus 51 ~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~GG 89 (212)
T cd03146 51 FYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGGG 89 (212)
T ss_pred HHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECCc
Confidence 34445556 654443321102356788899999998776
No 384
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=21.60 E-value=4.7e+02 Score=21.65 Aligned_cols=81 Identities=14% Similarity=0.243 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEec--CCCcchHHHHHHHc---------ceeEEec
Q 024872 126 PIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVP--GGSSNLKYDAFSAS---------RVALCTS 194 (261)
Q Consensus 126 ~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~--g~~~~~~~~~~~~a---------Dl~i~~S 194 (261)
|.+..+++.+.+.-. .++++++++. ...+.++...++++.-.+ || .+|+..++... |+....|
T Consensus 28 pLI~~v~~al~~~~d--~i~v~isp~t---p~t~~~~~~~gv~vi~tpG~GY-v~Dl~~al~~l~~P~lvvsaDLp~l~~ 101 (177)
T COG2266 28 PLIDRVLEALRKIVD--EIIVAISPHT---PKTKEYLESVGVKVIETPGEGY-VEDLRFALESLGTPILVVSADLPFLNP 101 (177)
T ss_pred cHHHHHHHHHHhhcC--cEEEEeCCCC---HhHHHHHHhcCceEEEcCCCCh-HHHHHHHHHhcCCceEEEecccccCCH
Confidence 455555555554222 3455566542 335566666665443333 34 56666666554 4444444
Q ss_pred hHH--HHHHHH-cCCCEEEEE
Q 024872 195 GTV--AVELQL-ARLPCVVAY 212 (261)
Q Consensus 195 Gt~--tlEa~~-~G~P~Vv~~ 212 (261)
... .++++. ..+|++.+.
T Consensus 102 ~~i~~vi~~~~~~~~p~~~~~ 122 (177)
T COG2266 102 SIIDSVIDAAASVEVPIVTVV 122 (177)
T ss_pred HHHHHHHHHHhhccCceeEee
Confidence 542 336666 777877654
No 385
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.49 E-value=4.5e+02 Score=23.44 Aligned_cols=20 Identities=5% Similarity=0.054 Sum_probs=16.1
Q ss_pred cchHHHHHHHcceeEEechH
Q 024872 177 SNLKYDAFSASRVALCTSGT 196 (261)
Q Consensus 177 ~~~~~~~~~~aDl~i~~SGt 196 (261)
..++.+..+.||++|+..|-
T Consensus 194 T~~l~~~~k~ADIvV~AvGk 213 (284)
T PRK14193 194 TRDLAAHTRRADIIVAAAGV 213 (284)
T ss_pred CCCHHHHHHhCCEEEEecCC
Confidence 35788899999999988764
No 386
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=21.31 E-value=4.2e+02 Score=23.86 Aligned_cols=54 Identities=11% Similarity=0.040 Sum_probs=29.8
Q ss_pred CeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEechH
Q 024872 141 ELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTSGT 196 (261)
Q Consensus 141 ~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~SGt 196 (261)
+-++++++-. ...=.-+..++.+.+..|.+..-. ..++.++.+.||++|+..|.
T Consensus 167 Gk~vvVIGRS-~iVGkPla~lL~~~~ATVtvchs~-T~nl~~~~~~ADIvv~AvGk 220 (299)
T PLN02516 167 GKKAVVVGRS-NIVGLPVSLLLLKADATVTVVHSR-TPDPESIVREADIVIAAAGQ 220 (299)
T ss_pred CCEEEEECCC-ccchHHHHHHHHHCCCEEEEeCCC-CCCHHHHHhhCCEEEEcCCC
Confidence 4455655433 222223444444333344443222 35688889999999987765
No 387
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=21.30 E-value=6.1e+02 Score=23.09 Aligned_cols=49 Identities=8% Similarity=0.043 Sum_probs=28.7
Q ss_pred CeEEEEEeC-CCcch----HHHHHHHHhcCCCCEEEecCCCcchHHHHHHHcceeEEec
Q 024872 141 ELITVIHVA-PNRHV----ENYITGLIQKWPVPSILVPGGSSNLKYDAFSASRVALCTS 194 (261)
Q Consensus 141 ~~~~vi~~~-~~~~~----~~~l~~~~~~~~~~v~v~~g~~~~~~~~~~~~aDl~i~~S 194 (261)
+..+.+++. +.-.. .+..++.+++.+.++.+. ++..+.+..||++.+..
T Consensus 199 g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~d~~ea~~~aDvvy~~~ 252 (335)
T PRK04523 199 GMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVS-----HDIDSAYAGADVVYAKS 252 (335)
T ss_pred CCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEE-----cCHHHHhCCCCEEEece
Confidence 477777665 32111 111223334445455543 37889999999999865
No 388
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=21.23 E-value=6.3e+02 Score=23.02 Aligned_cols=83 Identities=11% Similarity=-0.018 Sum_probs=44.0
Q ss_pred HhhcCC-CCCCcEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchH-HH---HHHHHhcCCCCEEEe
Q 024872 98 KNKYSV-PSGATVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVE-NY---ITGLIQKWPVPSILV 172 (261)
Q Consensus 98 r~~l~l-~~~~~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~-~~---l~~~~~~~~~~v~v~ 172 (261)
++++|- +-++..|+++|-.+. +....++.++..+ ++.+.+++.+.-... +. .++..++.+..+.+.
T Consensus 146 ~e~~g~~~l~g~~ia~vGD~~~----~v~~Sl~~~~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~ 216 (336)
T PRK03515 146 QEHLPGKAFNEMTLAYAGDARN----NMGNSLLEAAALT-----GLDLRLVAPKACWPEAALVTECRALAQKNGGNITLT 216 (336)
T ss_pred HHHhCCCCcCCCEEEEeCCCcC----cHHHHHHHHHHHc-----CCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEE
Confidence 455542 234467888864311 1122344444432 577777765432111 11 223334445445443
Q ss_pred cCCCcchHHHHHHHcceeEEec
Q 024872 173 PGGSSNLKYDAFSASRVALCTS 194 (261)
Q Consensus 173 ~g~~~~~~~~~~~~aDl~i~~S 194 (261)
+++.+++..||++.+.+
T Consensus 217 -----~d~~ea~~~aDvvytd~ 233 (336)
T PRK03515 217 -----EDIAEGVKGADFIYTDV 233 (336)
T ss_pred -----cCHHHHhCCCCEEEecC
Confidence 37889999999999974
No 389
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=21.19 E-value=1.9e+02 Score=26.25 Aligned_cols=35 Identities=17% Similarity=0.330 Sum_probs=27.3
Q ss_pred CcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCC
Q 024872 116 SRLQEVARMLPIFAKTVELLKDSFPELITVIHVAP 150 (261)
Q Consensus 116 SR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~ 150 (261)
+|....+.+...+.+..+.+.+..||..+++++-|
T Consensus 86 tR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNP 120 (313)
T COG0039 86 TRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNP 120 (313)
T ss_pred CHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCc
Confidence 77777777777788888888887788888877755
No 390
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.90 E-value=4.6e+02 Score=23.45 Aligned_cols=20 Identities=10% Similarity=0.210 Sum_probs=15.7
Q ss_pred cchHHHHHHHcceeEEechH
Q 024872 177 SNLKYDAFSASRVALCTSGT 196 (261)
Q Consensus 177 ~~~~~~~~~~aDl~i~~SGt 196 (261)
..++.++.+.||++|+..|-
T Consensus 191 T~~l~~~~~~ADIvV~AvG~ 210 (287)
T PRK14181 191 SENLTEILKTADIIIAAIGV 210 (287)
T ss_pred CCCHHHHHhhCCEEEEccCC
Confidence 35688888999999987764
No 391
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=20.85 E-value=4.5e+02 Score=21.14 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=21.4
Q ss_pred cEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeC
Q 024872 108 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVA 149 (261)
Q Consensus 108 ~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~ 149 (261)
..|.++||+.. .+.++.+.+.+++|+++++-..+
T Consensus 47 ~~v~llG~~~~--------~~~~~~~~l~~~yp~l~i~g~~~ 80 (171)
T cd06533 47 LRVFLLGAKPE--------VLEKAAERLRARYPGLKIVGYHH 80 (171)
T ss_pred CeEEEECCCHH--------HHHHHHHHHHHHCCCcEEEEecC
Confidence 34666755432 24456677888899999876333
No 392
>KOG2794 consensus Delta-aminolevulinic acid dehydratase [Coenzyme transport and metabolism]
Probab=20.80 E-value=5.9e+02 Score=22.79 Aligned_cols=44 Identities=20% Similarity=0.170 Sum_probs=29.7
Q ss_pred hHHHHHHHcceeEEechHHHHHHHH----cCCCEEEEEcCChHHHHHH
Q 024872 179 LKYDAFSASRVALCTSGTVAVELQL----ARLPCVVAYRAHFLTEWFI 222 (261)
Q Consensus 179 ~~~~~~~~aDl~i~~SGt~tlEa~~----~G~P~Vv~~~~~~~~~~ia 222 (261)
+..-+.+++-+-+.-=-++.+|+|. .|--.|++|-++.+-.|+-
T Consensus 290 EyaMi~aaa~~g~~Dlk~~vmEsm~~frRAGAdiIlTYfapq~l~~L~ 337 (340)
T KOG2794|consen 290 EYAMIKAAALAGMFDLKKVVMESMLGFRRAGADIILTYFAPQLLTWLC 337 (340)
T ss_pred hHHHHHHHHhcccccHHHHHHHHHHHHHhcCCcEEEeeccHHHHHHhh
Confidence 4455555555544444566778775 5889999998888777763
No 393
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=20.71 E-value=3.7e+02 Score=20.10 Aligned_cols=88 Identities=11% Similarity=0.046 Sum_probs=44.5
Q ss_pred CCcEEEEEcCCcHHH-HHhhHHHHHHHHHHHhhhC-CCeEEEEEeCCCc-chHHHHHHHHhcCCCCEEEecCCCcchHHH
Q 024872 106 GATVISLLPGSRLQE-VARMLPIFAKTVELLKDSF-PELITVIHVAPNR-HVENYITGLIQKWPVPSILVPGGSSNLKYD 182 (261)
Q Consensus 106 ~~~vIlll~GSR~~e-i~~~~~~ll~a~~~l~~~~-~~~~~vi~~~~~~-~~~~~l~~~~~~~~~~v~v~~g~~~~~~~~ 182 (261)
++++|+++-++-=.. -...++.+.+..+++.+.. .+++++.+..... +..+.+++.+++.+.+..++.+. .++...
T Consensus 22 gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ 100 (142)
T cd02968 22 GKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAFGPGWIGLTGT-PEEIEA 100 (142)
T ss_pred CCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEECC-HHHHHH
Confidence 456666653332222 2333455555555554421 2588887764322 22234566666655555555432 223456
Q ss_pred HHHHcceeEEec
Q 024872 183 AFSASRVALCTS 194 (261)
Q Consensus 183 ~~~~aDl~i~~S 194 (261)
+++.-++...+.
T Consensus 101 ~~~~~g~~~~~~ 112 (142)
T cd02968 101 LAKAFGVYYEKV 112 (142)
T ss_pred HHHHhcEEEEec
Confidence 666666665543
No 394
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=20.58 E-value=4.9e+02 Score=21.45 Aligned_cols=11 Identities=9% Similarity=-0.031 Sum_probs=9.0
Q ss_pred cEEEEEcCCcH
Q 024872 108 TVISLLPGSRL 118 (261)
Q Consensus 108 ~vIlll~GSR~ 118 (261)
+++++.|||.+
T Consensus 4 k~~lVtG~s~g 14 (246)
T PRK12938 4 RIAYVTGGMGG 14 (246)
T ss_pred CEEEEECCCCh
Confidence 57888998876
No 395
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.20 E-value=4.9e+02 Score=21.29 Aligned_cols=79 Identities=16% Similarity=0.082 Sum_probs=36.3
Q ss_pred cEEEEEcCCcHHHHHhhHHHHHHHHHHHhhhCCCeEEEEEeCCCcchHHHHHHHHhcCCCCEEEecCCC--cchHHHHHH
Q 024872 108 TVISLLPGSRLQEVARMLPIFAKTVELLKDSFPELITVIHVAPNRHVENYITGLIQKWPVPSILVPGGS--SNLKYDAFS 185 (261)
Q Consensus 108 ~vIlll~GSR~~ei~~~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~~v~v~~g~~--~~~~~~~~~ 185 (261)
+++++.|||.+ +.. ..++.+.+ .+.++++.++.+.+..+.+...+.+.+..+.+..... .+++.+++.
T Consensus 6 ~~ilI~Gasg~--iG~------~la~~l~~--~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 75 (247)
T PRK05565 6 KVAIVTGASGG--IGR------AIAELLAK--EGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVE 75 (247)
T ss_pred CEEEEeCCCcH--HHH------HHHHHHHH--CCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 47888988765 332 12233443 2567666534432211112222222222344332221 123334443
Q ss_pred -------HcceeEEechH
Q 024872 186 -------ASRVALCTSGT 196 (261)
Q Consensus 186 -------~aDl~i~~SGt 196 (261)
..|.+|..+|.
T Consensus 76 ~~~~~~~~id~vi~~ag~ 93 (247)
T PRK05565 76 QIVEKFGKIDILVNNAGI 93 (247)
T ss_pred HHHHHhCCCCEEEECCCc
Confidence 46899887763
Done!