Query 024874
Match_columns 261
No_of_seqs 209 out of 988
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:04:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024874.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024874hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3202 SNARE protein TLG1/Syn 100.0 9.6E-29 2.1E-33 213.3 25.6 226 30-260 2-233 (235)
2 KOG3385 V-SNARE [Intracellular 99.5 7E-14 1.5E-18 106.7 8.6 84 174-258 32-115 (118)
3 PF05739 SNARE: SNARE domain; 99.4 5.7E-12 1.2E-16 87.8 9.4 62 175-236 1-62 (63)
4 PF09177 Syntaxin-6_N: Syntaxi 99.2 1.2E-10 2.7E-15 88.3 9.9 88 34-121 1-97 (97)
5 KOG0810 SNARE protein Syntaxin 99.1 2E-09 4.3E-14 96.8 14.0 68 175-242 203-270 (297)
6 KOG0811 SNARE protein PEP12/VA 99.0 4.8E-08 1E-12 86.6 20.4 92 169-260 171-264 (269)
7 cd00193 t_SNARE Soluble NSF (N 99.0 1.3E-09 2.9E-14 74.5 7.6 58 174-231 2-59 (60)
8 smart00397 t_SNARE Helical reg 99.0 3.2E-09 6.9E-14 73.9 8.3 62 170-231 4-65 (66)
9 KOG0812 SNARE protein SED5/Syn 98.9 2.4E-06 5.2E-11 75.4 26.3 84 177-260 226-309 (311)
10 KOG3065 SNAP-25 (synaptosome-a 98.9 2.7E-09 5.8E-14 94.7 7.5 61 173-233 213-273 (273)
11 KOG0809 SNARE protein TLG2/Syn 98.9 5.2E-07 1.1E-11 79.8 19.7 215 36-255 59-295 (305)
12 COG5325 t-SNARE complex subuni 98.8 4.7E-08 1E-12 85.7 12.4 89 168-256 185-275 (283)
13 PF09753 Use1: Membrane fusion 98.6 1.3E-06 2.8E-11 77.3 13.3 84 173-258 162-245 (251)
14 COG5074 t-SNARE complex subuni 98.5 7.8E-07 1.7E-11 76.3 8.3 80 178-258 185-267 (280)
15 KOG2678 Predicted membrane pro 97.5 0.0016 3.5E-08 55.7 11.5 61 175-235 152-212 (244)
16 KOG1666 V-SNARE [Intracellular 97.5 0.022 4.8E-07 48.7 18.2 80 180-260 137-216 (220)
17 PF03908 Sec20: Sec20; InterP 97.3 0.0056 1.2E-07 45.8 11.1 83 178-261 8-90 (92)
18 KOG0860 Synaptobrevin/VAMP-lik 97.0 0.0095 2.1E-07 46.2 9.9 22 203-224 54-75 (116)
19 PF00957 Synaptobrevin: Synapt 96.9 0.012 2.7E-07 43.4 9.6 55 177-231 2-59 (89)
20 KOG3251 Golgi SNAP receptor co 96.8 0.23 5.1E-06 42.6 17.2 62 178-239 129-190 (213)
21 KOG3208 SNARE protein GS28 [In 96.7 0.32 7E-06 41.9 19.1 58 178-235 149-206 (231)
22 KOG3894 SNARE protein Syntaxin 96.6 0.032 6.9E-07 50.4 11.6 74 172-245 226-299 (316)
23 KOG0810 SNARE protein Syntaxin 96.5 0.044 9.6E-07 49.7 11.5 84 171-258 206-289 (297)
24 KOG0811 SNARE protein PEP12/VA 95.3 0.45 9.9E-06 42.5 12.7 96 164-261 173-268 (269)
25 COG5074 t-SNARE complex subuni 95.2 0.35 7.6E-06 42.1 11.2 75 172-254 193-268 (280)
26 PF12352 V-SNARE_C: Snare regi 95.2 0.56 1.2E-05 32.4 10.3 60 175-234 5-64 (66)
27 PF10779 XhlA: Haemolysin XhlA 95.1 0.34 7.3E-06 34.4 9.2 62 195-260 9-70 (71)
28 KOG3202 SNARE protein TLG1/Syn 94.4 3.2 7E-05 36.4 20.5 89 164-256 145-233 (235)
29 KOG0860 Synaptobrevin/VAMP-lik 93.1 1.8 4E-05 33.6 10.1 48 175-223 37-84 (116)
30 PF00957 Synaptobrevin: Synapt 92.2 2.3 5.1E-05 31.1 9.5 49 177-226 13-61 (89)
31 KOG0812 SNARE protein SED5/Syn 91.2 2.6 5.5E-05 37.9 10.1 86 164-253 220-307 (311)
32 PF07798 DUF1640: Protein of u 90.7 7.3 0.00016 32.5 12.1 54 196-255 117-170 (177)
33 KOG0809 SNARE protein TLG2/Syn 90.3 3.3 7.2E-05 37.3 10.0 90 165-258 212-301 (305)
34 PF11166 DUF2951: Protein of u 89.2 7.7 0.00017 29.0 9.7 27 167-193 14-40 (98)
35 PF01519 DUF16: Protein of unk 87.9 4.8 0.0001 30.6 8.0 50 175-224 50-99 (102)
36 PF05531 NPV_P10: Nucleopolyhe 86.0 6.1 0.00013 28.4 7.3 58 166-223 6-66 (75)
37 PF09753 Use1: Membrane fusion 85.7 8.4 0.00018 33.9 9.8 9 10-18 7-15 (251)
38 COG5325 t-SNARE complex subuni 83.5 20 0.00044 32.1 11.0 88 166-255 190-277 (283)
39 PRK10884 SH3 domain-containing 82.5 31 0.00067 29.7 11.7 41 191-231 117-157 (206)
40 PF03908 Sec20: Sec20; InterP 82.4 17 0.00037 26.8 9.2 17 211-227 48-64 (92)
41 PF15188 CCDC-167: Coiled-coil 79.3 6.4 0.00014 29.0 5.4 28 211-238 41-68 (85)
42 PF07889 DUF1664: Protein of u 77.8 33 0.00071 27.2 10.7 61 172-232 62-122 (126)
43 PRK00846 hypothetical protein; 76.3 26 0.00057 25.3 8.6 53 173-225 8-60 (77)
44 PF04272 Phospholamban: Phosph 76.0 9.8 0.00021 24.5 4.8 16 241-256 34-49 (52)
45 PF05478 Prominin: Prominin; 75.5 1.1E+02 0.0023 31.9 20.1 19 72-90 250-268 (806)
46 PF00804 Syntaxin: Syntaxin; 74.1 31 0.00067 25.0 10.9 87 34-120 3-102 (103)
47 TIGR01294 P_lamban phospholamb 73.6 11 0.00025 24.2 4.6 17 241-257 34-50 (52)
48 PF04102 SlyX: SlyX; InterPro 73.2 24 0.00052 24.7 6.9 49 177-225 3-51 (69)
49 KOG0862 Synaptobrevin/VAMP-lik 72.8 41 0.00089 29.1 9.4 81 178-259 134-214 (216)
50 cd00179 SynN Syntaxin N-termin 72.6 39 0.00085 26.7 9.0 91 34-125 2-105 (151)
51 PRK01026 tetrahydromethanopter 72.3 26 0.00056 25.3 6.8 25 200-224 16-40 (77)
52 KOG0994 Extracellular matrix g 71.8 1.6E+02 0.0034 32.1 18.0 40 196-235 1588-1627(1758)
53 smart00503 SynN Syntaxin N-ter 70.9 42 0.00091 25.2 8.8 91 33-124 3-105 (117)
54 PF03904 DUF334: Domain of unk 70.4 73 0.0016 27.8 11.2 13 201-213 92-104 (230)
55 PHA03386 P10 fibrous body prot 70.3 27 0.00058 26.1 6.7 54 166-223 7-60 (94)
56 PHA02819 hypothetical protein; 69.2 5.8 0.00013 28.0 2.8 6 255-260 61-66 (71)
57 PRK11637 AmiB activator; Provi 68.8 99 0.0022 29.3 12.2 63 174-236 71-133 (428)
58 PF01519 DUF16: Protein of unk 68.3 51 0.0011 25.1 8.3 57 175-231 34-92 (102)
59 KOG3647 Predicted coiled-coil 68.3 89 0.0019 28.1 10.7 90 31-121 43-160 (338)
60 PHA03395 p10 fibrous body prot 68.3 27 0.00059 25.8 6.3 57 166-222 6-65 (87)
61 PRK10884 SH3 domain-containing 67.8 79 0.0017 27.1 12.8 11 246-256 180-190 (206)
62 PF04728 LPP: Lipoprotein leuc 67.5 36 0.00077 23.0 7.9 51 179-236 4-54 (56)
63 TIGR01149 mtrG N5-methyltetrah 67.4 35 0.00075 24.1 6.4 25 200-224 13-37 (70)
64 PRK02119 hypothetical protein; 67.3 42 0.00092 23.8 7.9 50 175-224 6-55 (73)
65 PRK04406 hypothetical protein; 67.0 44 0.00095 23.9 8.2 49 175-223 8-56 (75)
66 PF03670 UPF0184: Uncharacteri 66.3 20 0.00043 26.3 5.2 22 172-193 27-48 (83)
67 PHA03054 IMV membrane protein; 65.4 7.2 0.00016 27.6 2.7 8 253-260 61-68 (72)
68 PRK04325 hypothetical protein; 65.3 47 0.001 23.6 7.8 47 178-224 9-55 (74)
69 PF10661 EssA: WXG100 protein 65.2 19 0.00042 29.1 5.7 20 241-260 118-137 (145)
70 PF05478 Prominin: Prominin; 65.1 75 0.0016 33.0 11.2 18 189-206 361-378 (806)
71 PHA02844 putative transmembran 64.9 7.3 0.00016 27.8 2.7 8 253-260 61-68 (75)
72 PRK14762 membrane protein; Pro 64.2 11 0.00024 21.1 2.7 17 242-258 6-22 (27)
73 cd00179 SynN Syntaxin N-termin 63.9 61 0.0013 25.6 8.5 60 174-233 9-68 (151)
74 PHA02650 hypothetical protein; 63.8 7.8 0.00017 28.0 2.7 9 252-260 61-69 (81)
75 PRK00736 hypothetical protein; 63.7 48 0.001 23.2 7.6 46 179-224 6-51 (68)
76 PF11044 TMEMspv1-c74-12: Plec 63.4 9.6 0.00021 24.4 2.8 18 242-259 4-21 (49)
77 PRK11637 AmiB activator; Provi 62.3 1.2E+02 0.0025 28.8 11.3 58 177-234 67-124 (428)
78 PRK09973 putative outer membra 62.1 56 0.0012 24.1 7.0 25 179-203 25-49 (85)
79 PF10151 DUF2359: Uncharacteri 62.0 1.6E+02 0.0035 28.6 12.5 68 177-244 196-268 (469)
80 KOG1666 V-SNARE [Intracellular 61.5 42 0.00091 29.0 7.2 53 201-258 165-217 (220)
81 KOG2678 Predicted membrane pro 61.0 1E+02 0.0022 26.9 9.4 57 175-234 148-204 (244)
82 PF06143 Baculo_11_kDa: Baculo 60.6 8.9 0.00019 28.2 2.6 11 227-237 20-30 (84)
83 PF06024 DUF912: Nucleopolyhed 60.3 8.8 0.00019 29.1 2.7 18 243-260 65-82 (101)
84 PF05957 DUF883: Bacterial pro 59.2 68 0.0015 23.5 11.3 29 175-203 6-34 (94)
85 PRK02793 phi X174 lysis protei 58.7 62 0.0014 22.9 7.8 47 177-223 7-53 (72)
86 PRK00295 hypothetical protein; 58.0 62 0.0013 22.6 7.7 46 179-224 6-51 (68)
87 PF04210 MtrG: Tetrahydrometha 57.8 64 0.0014 22.8 6.4 25 200-224 13-37 (70)
88 TIGR01732 tiny_TM_bacill conse 56.7 11 0.00024 21.3 2.0 16 240-255 6-21 (26)
89 PF15106 TMEM156: TMEM156 prot 56.5 7.8 0.00017 33.3 2.0 19 242-261 178-196 (226)
90 PHA02975 hypothetical protein; 56.2 10 0.00022 26.6 2.2 8 253-260 57-64 (69)
91 PF09680 Tiny_TM_bacill: Prote 55.1 12 0.00025 20.8 1.8 16 240-255 4-19 (24)
92 PF03904 DUF334: Domain of unk 55.1 1.4E+02 0.003 26.1 9.3 33 192-224 113-145 (230)
93 PF10717 ODV-E18: Occlusion-de 54.7 15 0.00031 26.9 2.8 16 243-258 29-44 (85)
94 PF05961 Chordopox_A13L: Chord 54.4 14 0.00029 26.0 2.5 20 242-261 5-24 (68)
95 TIGR01478 STEVOR variant surfa 54.1 11 0.00023 34.0 2.6 22 239-260 260-281 (295)
96 PF06084 Cytomega_TRL10: Cytom 52.9 8.2 0.00018 30.0 1.4 15 247-261 67-81 (150)
97 PTZ00370 STEVOR; Provisional 52.6 12 0.00026 33.8 2.5 22 239-260 256-277 (296)
98 smart00503 SynN Syntaxin N-ter 52.2 97 0.0021 23.1 8.8 61 173-233 10-70 (117)
99 COG4064 MtrG Tetrahydromethano 52.2 82 0.0018 22.3 7.1 26 199-224 15-40 (75)
100 KOG0994 Extracellular matrix g 52.1 2E+02 0.0044 31.3 11.4 81 3-91 1173-1255(1758)
101 COG3883 Uncharacterized protei 50.6 1.9E+02 0.0041 26.0 12.0 74 175-248 49-124 (265)
102 PF00523 Fusion_gly: Fusion gl 50.5 11 0.00025 36.6 2.3 24 209-232 441-464 (490)
103 COG4575 ElaB Uncharacterized c 50.3 1.1E+02 0.0024 23.3 10.8 80 171-250 12-92 (104)
104 KOG3385 V-SNARE [Intracellular 49.5 1.2E+02 0.0027 23.6 7.7 20 241-260 95-114 (118)
105 PF09771 Tmemb_18A: Transmembr 49.1 56 0.0012 25.9 5.6 43 218-260 5-48 (125)
106 PHA03049 IMV membrane protein; 47.7 21 0.00046 24.9 2.6 19 243-261 6-24 (68)
107 KOG0859 Synaptobrevin/VAMP-lik 47.6 30 0.00065 29.6 4.1 14 181-194 128-141 (217)
108 PRK15396 murein lipoprotein; P 47.5 1.1E+02 0.0023 22.2 7.1 20 217-236 57-76 (78)
109 PF00804 Syntaxin: Syntaxin; 47.3 1E+02 0.0023 22.1 8.4 62 171-232 7-68 (103)
110 PF11315 Med30: Mediator compl 47.0 1.6E+02 0.0034 24.1 8.3 19 2-20 56-74 (150)
111 PF10669 Phage_Gp23: Protein g 46.4 49 0.0011 25.0 4.6 31 164-194 82-112 (121)
112 PF10498 IFT57: Intra-flagella 45.8 1.9E+02 0.0042 27.0 9.6 46 75-120 301-347 (359)
113 PRK11466 hybrid sensory histid 45.6 1.6E+02 0.0034 30.5 9.9 8 209-216 302-309 (914)
114 COG3883 Uncharacterized protei 45.5 2E+02 0.0042 25.8 9.1 46 182-227 49-94 (265)
115 PF09125 COX2-transmemb: Cytoc 45.4 25 0.00054 21.6 2.4 10 228-237 4-13 (38)
116 PF08693 SKG6: Transmembrane a 44.9 17 0.00037 22.8 1.7 13 248-260 23-35 (40)
117 PF08614 ATG16: Autophagy prot 44.3 1.9E+02 0.0041 24.2 9.2 69 168-236 106-174 (194)
118 PF11119 DUF2633: Protein of u 44.1 21 0.00045 24.4 2.1 23 238-260 5-27 (59)
119 COG4477 EzrA Negative regulato 43.4 3.4E+02 0.0074 26.9 16.6 61 175-235 372-435 (570)
120 PF04859 DUF641: Plant protein 42.9 1.1E+02 0.0024 24.3 6.5 38 72-121 84-121 (131)
121 PF05739 SNARE: SNARE domain; 42.5 99 0.0021 20.4 10.1 56 173-228 6-61 (63)
122 PF06143 Baculo_11_kDa: Baculo 42.3 80 0.0017 23.2 5.1 12 222-233 26-37 (84)
123 PF03597 CcoS: Cytochrome oxid 42.2 24 0.00052 22.7 2.1 19 243-261 6-24 (45)
124 PHA02692 hypothetical protein; 42.2 25 0.00055 24.8 2.4 8 253-260 59-66 (70)
125 PF12718 Tropomyosin_1: Tropom 41.6 1.8E+02 0.004 23.3 10.0 66 170-235 41-109 (143)
126 TIGR02956 TMAO_torS TMAO reduc 41.5 3.2E+02 0.007 28.3 11.5 28 207-234 300-327 (968)
127 KOG0933 Structural maintenance 41.4 4.8E+02 0.01 28.0 18.8 54 178-231 829-882 (1174)
128 TIGR00847 ccoS cytochrome oxid 41.3 25 0.00054 23.3 2.1 19 243-261 7-25 (51)
129 PF12423 KIF1B: Kinesin protei 41.0 5.8 0.00013 25.4 -0.9 32 7-39 2-36 (45)
130 PF08650 DASH_Dad4: DASH compl 39.7 1E+02 0.0023 21.9 5.2 33 203-235 8-40 (72)
131 PRK04654 sec-independent trans 39.1 2.6E+02 0.0056 24.2 8.9 19 183-201 32-50 (214)
132 PF00261 Tropomyosin: Tropomyo 38.4 2.6E+02 0.0057 24.2 9.8 64 170-233 84-147 (237)
133 PF12495 Vip3A_N: Vegetative i 37.4 1.7E+02 0.0037 23.2 6.6 65 171-235 45-116 (177)
134 KOG3065 SNAP-25 (synaptosome-a 37.2 3.1E+02 0.0068 24.6 9.8 47 186-232 87-133 (273)
135 TIGR00383 corA magnesium Mg(2+ 37.1 3.1E+02 0.0066 24.5 15.2 46 74-119 148-193 (318)
136 PF10779 XhlA: Haemolysin XhlA 36.8 1.5E+02 0.0031 20.7 10.3 40 209-256 30-69 (71)
137 PF14523 Syntaxin_2: Syntaxin- 36.5 1.7E+02 0.0037 21.4 6.7 54 179-233 4-57 (102)
138 COG5416 Uncharacterized integr 34.7 35 0.00075 25.7 2.2 22 237-258 19-42 (98)
139 PRK15396 murein lipoprotein; P 34.4 1.8E+02 0.0039 21.0 8.0 36 176-211 37-72 (78)
140 KOG0859 Synaptobrevin/VAMP-lik 34.0 65 0.0014 27.6 4.0 18 176-193 120-137 (217)
141 PRK11085 magnesium/nickel/coba 33.8 3.7E+02 0.0081 24.6 9.5 14 77-90 148-161 (316)
142 PF05008 V-SNARE: Vesicle tran 33.4 1.7E+02 0.0036 20.4 7.9 27 97-123 50-76 (79)
143 KOG3208 SNARE protein GS28 [In 33.2 2.2E+02 0.0047 24.8 7.1 25 207-231 185-209 (231)
144 PF11932 DUF3450: Protein of u 32.9 3.3E+02 0.0072 23.7 11.8 46 175-220 53-98 (251)
145 PRK00720 tatA twin arginine tr 32.7 39 0.00085 24.5 2.2 14 242-255 7-20 (78)
146 smart00502 BBC B-Box C-termina 32.6 2.1E+02 0.0045 21.2 8.6 51 193-243 47-98 (127)
147 COG1775 HgdB Benzoyl-CoA reduc 32.5 1E+02 0.0023 28.9 5.5 41 2-42 164-205 (379)
148 PF13800 Sigma_reg_N: Sigma fa 32.3 25 0.00055 26.0 1.2 6 231-236 3-8 (96)
149 COG4537 ComGC Competence prote 32.2 72 0.0016 24.3 3.6 11 227-237 2-12 (107)
150 PF12911 OppC_N: N-terminal TM 31.9 78 0.0017 20.5 3.5 15 242-256 20-34 (56)
151 PF08372 PRT_C: Plant phosphor 31.7 2.9E+02 0.0063 22.7 7.5 21 179-199 53-73 (156)
152 PHA03164 hypothetical protein; 31.7 48 0.001 23.9 2.4 7 243-249 65-71 (88)
153 smart00502 BBC B-Box C-termina 31.5 2.2E+02 0.0047 21.1 10.2 61 175-235 43-104 (127)
154 PF06103 DUF948: Bacterial pro 31.2 2E+02 0.0044 20.7 9.6 47 172-221 27-73 (90)
155 PF06972 DUF1296: Protein of u 31.2 48 0.001 22.7 2.3 29 12-42 26-54 (60)
156 PRK02958 tatA twin arginine tr 31.2 43 0.00093 23.9 2.2 13 242-254 7-19 (73)
157 PF07432 Hc1: Histone H1-like 31.0 2.1E+02 0.0046 22.3 6.1 48 183-237 2-49 (123)
158 PF00737 PsbH: Photosystem II 30.6 64 0.0014 21.4 2.7 18 244-261 30-47 (52)
159 PF01601 Corona_S2: Coronaviru 30.5 22 0.00047 35.3 0.8 9 193-201 509-517 (610)
160 PF10805 DUF2730: Protein of u 30.4 2.4E+02 0.0052 21.3 8.4 61 168-235 39-101 (106)
161 PF09577 Spore_YpjB: Sporulati 30.3 2.3E+02 0.005 24.8 7.0 25 77-103 50-74 (232)
162 PF06009 Laminin_II: Laminin D 29.9 17 0.00038 28.9 0.0 55 175-229 49-106 (138)
163 PF06716 DUF1201: Protein of u 29.9 45 0.00098 21.6 1.9 8 253-260 25-32 (54)
164 PF01102 Glycophorin_A: Glycop 29.6 51 0.0011 25.9 2.6 7 252-258 81-87 (122)
165 PF11446 DUF2897: Protein of u 29.1 63 0.0014 21.7 2.6 13 242-254 6-18 (55)
166 PRK09738 small toxic polypepti 29.0 60 0.0013 21.6 2.4 16 240-255 8-23 (52)
167 PF06422 PDR_CDR: CDR ABC tran 28.9 53 0.0011 24.8 2.5 18 238-255 48-65 (103)
168 PF02532 PsbI: Photosystem II 28.7 96 0.0021 18.9 3.0 14 246-259 11-24 (36)
169 PF05283 MGC-24: Multi-glycosy 28.6 48 0.001 28.1 2.4 21 241-261 162-182 (186)
170 PF12777 MT: Microtubule-bindi 28.4 2.4E+02 0.0053 25.9 7.3 63 173-235 230-292 (344)
171 PF02646 RmuC: RmuC family; I 28.3 4.5E+02 0.0097 23.7 9.2 67 172-242 7-73 (304)
172 PF00261 Tropomyosin: Tropomyo 28.2 1.7E+02 0.0036 25.4 5.9 37 194-230 31-67 (237)
173 PRK09400 secE preprotein trans 28.2 2E+02 0.0043 19.7 6.1 40 220-259 8-52 (61)
174 PF05781 MRVI1: MRVI1 protein; 28.2 1.2E+02 0.0026 29.9 5.3 21 34-54 195-215 (538)
175 PRK02793 phi X174 lysis protei 27.6 2.2E+02 0.0048 20.0 6.6 22 171-192 15-36 (72)
176 PF07889 DUF1664: Protein of u 27.4 3.1E+02 0.0068 21.6 9.4 34 183-216 87-120 (126)
177 PF04728 LPP: Lipoprotein leuc 27.4 2E+02 0.0044 19.4 8.7 38 175-212 14-51 (56)
178 PRK09759 small toxic polypepti 27.2 73 0.0016 21.0 2.6 15 241-255 7-21 (50)
179 PRK04778 septation ring format 27.2 6.2E+02 0.013 25.0 18.6 48 3-50 210-268 (569)
180 PF02009 Rifin_STEVOR: Rifin/s 27.2 50 0.0011 30.1 2.4 10 12-21 19-28 (299)
181 PF05545 FixQ: Cbb3-type cytoc 26.7 73 0.0016 20.5 2.6 15 246-260 16-30 (49)
182 PF06643 DUF1158: Protein of u 26.3 70 0.0015 22.8 2.5 20 241-260 54-74 (82)
183 PHA02675 ORF104 fusion protein 26.2 2.7E+02 0.0058 20.5 7.5 40 190-229 42-81 (90)
184 COG0598 CorA Mg2+ and Co2+ tra 26.2 4.9E+02 0.011 23.5 10.9 20 73-92 152-171 (322)
185 PLN00055 photosystem II reacti 25.7 85 0.0018 22.4 2.8 18 244-261 45-62 (73)
186 COG3197 FixS Uncharacterized p 25.7 69 0.0015 21.8 2.3 19 243-261 7-25 (58)
187 CHL00066 psbH photosystem II p 25.6 86 0.0019 22.3 2.8 18 244-261 45-62 (73)
188 PF01034 Syndecan: Syndecan do 25.6 23 0.0005 24.6 0.0 14 247-260 21-34 (64)
189 PRK04561 tatA twin arginine tr 25.0 63 0.0014 23.2 2.1 8 242-249 7-14 (75)
190 PF11293 DUF3094: Protein of u 25.0 1.8E+02 0.004 19.5 4.2 19 240-258 29-47 (55)
191 PF06160 EzrA: Septation ring 24.8 6.9E+02 0.015 24.7 18.3 20 3-22 206-225 (560)
192 cd07627 BAR_Vps5p The Bin/Amph 24.3 4.4E+02 0.0096 22.3 10.1 70 167-237 7-82 (216)
193 PF05377 FlaC_arch: Flagella a 24.2 2.3E+02 0.005 19.1 5.4 24 176-199 5-28 (55)
194 PF05791 Bacillus_HBL: Bacillu 24.1 4.2E+02 0.0091 22.0 9.6 61 176-236 101-161 (184)
195 PF04102 SlyX: SlyX; InterPro 23.9 2.5E+02 0.0055 19.4 6.4 20 173-192 13-32 (69)
196 PRK01833 tatA twin arginine tr 23.9 69 0.0015 22.9 2.2 10 242-251 7-16 (74)
197 PF11027 DUF2615: Protein of u 23.7 2.4E+02 0.0051 21.6 5.2 12 224-235 16-27 (103)
198 PHA03240 envelope glycoprotein 23.7 60 0.0013 28.2 2.1 19 241-259 211-229 (258)
199 COG2900 SlyX Uncharacterized p 23.5 2.8E+02 0.006 19.7 7.6 23 198-220 28-50 (72)
200 PLN03160 uncharacterized prote 23.5 57 0.0012 28.2 2.0 10 235-244 34-43 (219)
201 PF15012 DUF4519: Domain of un 23.3 52 0.0011 22.2 1.3 14 247-260 37-50 (56)
202 PRK02624 psbH photosystem II r 22.9 1.1E+02 0.0023 21.2 2.8 18 244-261 33-50 (64)
203 PF13747 DUF4164: Domain of un 22.9 3.1E+02 0.0068 20.1 9.1 57 178-234 32-88 (89)
204 PF01544 CorA: CorA-like Mg2+ 22.9 4.9E+02 0.011 22.4 9.6 18 74-91 124-141 (292)
205 PF05615 THOC7: Tho complex su 22.8 3.8E+02 0.0081 21.0 12.1 26 68-93 81-106 (139)
206 PF06193 Orthopox_A5L: Orthopo 22.8 4.5E+02 0.0097 21.8 7.9 49 186-234 112-160 (166)
207 PF03938 OmpH: Outer membrane 22.8 2.6E+02 0.0056 22.2 5.7 48 72-119 47-94 (158)
208 PHA02909 hypothetical protein; 22.7 85 0.0018 21.2 2.3 8 240-247 30-37 (72)
209 PRK00736 hypothetical protein; 22.7 2.7E+02 0.0059 19.3 6.6 24 169-192 10-33 (68)
210 cd00193 t_SNARE Soluble NSF (N 22.5 2.2E+02 0.0047 18.1 7.9 44 180-223 15-58 (60)
211 PF13060 DUF3921: Protein of u 22.3 2.4E+02 0.0052 18.5 6.7 38 189-226 12-49 (58)
212 PF04568 IATP: Mitochondrial A 21.6 2.4E+02 0.0051 21.4 4.8 24 193-216 77-100 (100)
213 PRK04406 hypothetical protein; 21.4 3.1E+02 0.0067 19.5 8.0 30 201-230 20-49 (75)
214 PF06682 DUF1183: Protein of u 21.4 52 0.0011 30.2 1.4 8 242-249 158-165 (318)
215 PRK13729 conjugal transfer pil 21.4 5.3E+02 0.011 25.2 8.2 23 166-188 71-93 (475)
216 PF14018 DUF4234: Domain of un 21.3 2.2E+02 0.0047 19.7 4.4 35 226-260 26-60 (75)
217 PF08135 EPV_E5: Major transfo 21.3 1.2E+02 0.0026 19.2 2.6 15 246-260 18-32 (44)
218 PRK00295 hypothetical protein; 21.3 2.9E+02 0.0063 19.1 6.6 22 171-192 12-33 (68)
219 KOG4358 Uncharacterized conser 21.1 2.1E+02 0.0046 27.8 5.4 22 32-53 496-517 (584)
220 PRK02119 hypothetical protein; 21.0 3.1E+02 0.0067 19.3 6.6 22 171-192 16-37 (73)
221 PF11239 DUF3040: Protein of u 21.0 2.6E+02 0.0057 19.9 4.9 23 206-228 9-31 (82)
222 KOG3156 Uncharacterized membra 21.0 5.6E+02 0.012 22.3 12.2 39 220-258 177-216 (220)
223 PF06738 DUF1212: Protein of u 20.9 2.2E+02 0.0047 23.5 5.1 24 221-244 83-106 (193)
224 TIGR02132 phaR_Bmeg polyhydrox 20.9 5.1E+02 0.011 21.8 8.9 56 168-223 83-138 (189)
225 PF12108 SF3a60_bindingd: Spli 20.9 98 0.0021 17.9 2.0 14 30-43 3-16 (28)
226 PF10805 DUF2730: Protein of u 20.5 3.8E+02 0.0083 20.2 9.2 47 169-215 47-95 (106)
227 COG4736 CcoQ Cbb3-type cytochr 20.5 1.1E+02 0.0025 20.9 2.6 18 242-260 13-30 (60)
228 KOG0771 Prolactin regulatory e 20.4 85 0.0019 29.7 2.6 21 240-260 368-388 (398)
229 PF06072 Herpes_US9: Alphaherp 20.1 1.3E+02 0.0028 20.6 2.8 13 216-228 9-21 (60)
230 PHA02047 phage lambda Rz1-like 20.1 3.9E+02 0.0085 20.2 8.0 44 196-239 38-81 (101)
231 PF10168 Nup88: Nuclear pore c 20.1 9.7E+02 0.021 24.7 11.5 20 176-195 556-575 (717)
232 KOG0946 ER-Golgi vesicle-tethe 20.1 7.9E+02 0.017 25.9 9.3 68 167-234 660-727 (970)
No 1
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.6e-29 Score=213.30 Aligned_cols=226 Identities=21% Similarity=0.243 Sum_probs=153.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHhhh-hh-hhhhhhhcHHHHHHHHHHHHhHHHHHHHHHhh--cCCCCHHHHHH
Q 024874 30 VSGDDAFARLYGAVEADIEAALQKAESASNE-KN-RASVVALNAEIRRTKARLLEEVPKLQRLAIKK--VKGLSTEELVA 105 (261)
Q Consensus 30 ~~~~DpF~~v~~d~~~~l~~l~~~~~~~~~e-rn-r~~~~~~~~eir~~l~~L~~~l~~L~~~l~~k--~~~lt~~El~~ 105 (261)
.+..|||+.++.++...++.+...+..+... .. .+........||+.+....++|+.+...+.+. .+++++.|+.+
T Consensus 2 ~~~~Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~~~~~~~~~t~~lr~~i~~~~edl~~~~~il~~~~~~~~ide~El~~ 81 (235)
T KOG3202|consen 2 LSSEDPFFRVKNETLKLSEEIQGLYQRRSELLKDTGSDAEELTSVLRRSIEEDLEDLDELISILERNPSKFGIDEFELSR 81 (235)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHHHHHHHHHHHHHHHhCcccccCcHHHHHH
Confidence 3567999999999988888887665433322 22 12222223467744444444444444332221 36899999999
Q ss_pred HHHHHHHHHHHHHcchhcccCCCCCCCCCCCCCCCcc-cccCCCCCCCchhhhcChh-HHHHHHHHHHHHHhhhhhHHHH
Q 024874 106 RNDLVLALPDRIQAIPDGTAAAPKQSGGWGASASRTE-IKFDSDGRFDDEYFQQTEE-SSQFRQEYEMRKMKQDQGLDMI 183 (261)
Q Consensus 106 R~~~v~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~te~-~~~~~q~q~~~~~eqD~~Ld~l 183 (261)
|+.++.+++.++.+++..+...+..+.........+. .+ +.....+...+.+ .+...+.|++.+++||++||.|
T Consensus 82 R~~~i~~lr~q~~~~~~~~~~~~~~~~~~r~~l~~~~~~~----~~~~~~~~~~~~D~v~~~~~~qqqm~~eQDe~Ld~l 157 (235)
T KOG3202|consen 82 RRRFIDNLRTQLRQMKSKMAMSGFANSNIRDILLGPEKSP----NLDEAMSRASGLDNVQEIVQLQQQMLQEQDEGLDGL 157 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccchhhhcCCCCCC----chhhhHHHhhccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988752111100000000110 00 0000000011112 3566678889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhc
Q 024874 184 SEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIILGIAAYLY 260 (261)
Q Consensus 184 ~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i~llv~il~i~~~i~ 260 (261)
+++|+++|++|..||+||++|+.|||++++.||.|..+|+++++++.++.+..+++++||++ +++++++++++++|
T Consensus 158 s~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~~~i-l~l~~~~~lvv~i~ 233 (235)
T KOG3202|consen 158 SATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCSQWCAI-LLLVGLLLLVVIIF 233 (235)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHH-HHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999955566678884 55555555555555
No 2
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=7e-14 Score=106.69 Aligned_cols=84 Identities=21% Similarity=0.302 Sum_probs=72.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 024874 174 MKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIIL 253 (261)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i~llv~il 253 (261)
.|.|+.++.|.+.|..||.++.+||.|++.||++||.+++++|++...|.+++.|++.+.+. .....||+.+++++|.|
T Consensus 32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-sg~~l~~~m~~f~lV~~ 110 (118)
T KOG3385|consen 32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-SGISLLCWMAVFSLVAF 110 (118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999998776 44446777555555555
Q ss_pred HHHHH
Q 024874 254 GIAAY 258 (261)
Q Consensus 254 ~i~~~ 258 (261)
+|++|
T Consensus 111 fi~~~ 115 (118)
T KOG3385|consen 111 FILWV 115 (118)
T ss_pred HHhhe
Confidence 55444
No 3
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.36 E-value=5.7e-12 Score=87.82 Aligned_cols=62 Identities=35% Similarity=0.597 Sum_probs=59.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Q 024874 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQL 236 (261)
Q Consensus 175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~ 236 (261)
|+|+.|+.|+.+|.+|++++.+||.||++|+++||.|+.+|+.|...|..++++|+++.++.
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~ 62 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999999999999999988764
No 4
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=99.21 E-value=1.2e-10 Score=88.32 Aligned_cols=88 Identities=19% Similarity=0.241 Sum_probs=68.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh----hhhhcHHHHHHHHHHHHhHHHHHHHHH--hh---cCCCCHHHHH
Q 024874 34 DAFARLYGAVEADIEAALQKAESASNEKNRAS----VVALNAEIRRTKARLLEEVPKLQRLAI--KK---VKGLSTEELV 104 (261)
Q Consensus 34 DpF~~v~~d~~~~l~~l~~~~~~~~~ernr~~----~~~~~~eir~~l~~L~~~l~~L~~~l~--~k---~~~lt~~El~ 104 (261)
|||+.|++++.+.|..+..++..+...+..+. ......+|+..|..++++|.+|++++. .+ .|+|++.|+.
T Consensus 1 DPF~~v~~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~ 80 (97)
T PF09177_consen 1 DPFFVVKDEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEIS 80 (97)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHH
Confidence 89999999999999999888665444333221 112336999999999999999999953 11 3699999999
Q ss_pred HHHHHHHHHHHHHHcch
Q 024874 105 ARNDLVLALPDRIQAIP 121 (261)
Q Consensus 105 ~R~~~v~~l~~~l~~l~ 121 (261)
+|++||..++.++..|+
T Consensus 81 ~Rr~fv~~~~~~i~~~k 97 (97)
T PF09177_consen 81 RRRQFVSAIRNQIKQMK 97 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999998874
No 5
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=2e-09 Score=96.82 Aligned_cols=68 Identities=19% Similarity=0.333 Sum_probs=60.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCch
Q 024874 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNF 242 (261)
Q Consensus 175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ 242 (261)
+-=..+-.|..++..||+++.+|...++.|++|+|.|+.+|.++...+..++..+++.+...++.++|
T Consensus 203 ~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~ 270 (297)
T KOG0810|consen 203 ERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKW 270 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33456788999999999999999999999999999999999999999999999999988877665544
No 6
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=4.8e-08 Score=86.60 Aligned_cols=92 Identities=17% Similarity=0.239 Sum_probs=74.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCch-H-HHH
Q 024874 169 YEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNF-C-IDI 246 (261)
Q Consensus 169 q~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~-c-i~i 246 (261)
+...+++.++.+..|...|..+.+|..++|.=|.+|++++|.|+..|++|...+..++..|.+..++.++.++| | +.+
T Consensus 171 ~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~ 250 (269)
T KOG0811|consen 171 QLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLL 250 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhH
Confidence 44667789999999999999999999999999999999999999999999999999999999999987654433 3 333
Q ss_pred HHHHHHHHHHHHhc
Q 024874 247 VLLCIILGIAAYLY 260 (261)
Q Consensus 247 ~llv~il~i~~~i~ 260 (261)
+++++++++++++|
T Consensus 251 v~~~v~lii~l~i~ 264 (269)
T KOG0811|consen 251 VGGPVGLIIGLIIA 264 (269)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344444443
No 7
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.02 E-value=1.3e-09 Score=74.52 Aligned_cols=58 Identities=33% Similarity=0.548 Sum_probs=56.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 024874 174 MKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231 (261)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~ 231 (261)
+++|+.|+.|+..|..|++++.+|+.++..|+++||.++..++.+...+..+++++.+
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~k 59 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK 59 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999999999999999999999999976
No 8
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=98.98 E-value=3.2e-09 Score=73.88 Aligned_cols=62 Identities=31% Similarity=0.501 Sum_probs=59.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 024874 170 EMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231 (261)
Q Consensus 170 ~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~ 231 (261)
...+.++|+.|+.|+..+..+++++..|+.+|..|+++||.++..++.+...+..+++++++
T Consensus 4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~ 65 (66)
T smart00397 4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 45677999999999999999999999999999999999999999999999999999999876
No 9
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=2.4e-06 Score=75.38 Aligned_cols=84 Identities=17% Similarity=0.290 Sum_probs=71.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Q 024874 177 DQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIILGIA 256 (261)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i~llv~il~i~ 256 (261)
-..+..|+.+|..|.++...+..-+.+|++++..||+.||.+.-.+..+..-|-+.++..+++++.++=|+.|+++|+++
T Consensus 226 ~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFflv 305 (311)
T KOG0812|consen 226 AKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFLV 305 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999998888776666566655555555
Q ss_pred HHhc
Q 024874 257 AYLY 260 (261)
Q Consensus 257 ~~i~ 260 (261)
++++
T Consensus 306 fvlf 309 (311)
T KOG0812|consen 306 FVLF 309 (311)
T ss_pred HHHh
Confidence 5553
No 10
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=2.7e-09 Score=94.71 Aligned_cols=61 Identities=38% Similarity=0.494 Sum_probs=58.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 024874 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTV 233 (261)
Q Consensus 173 ~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~ 233 (261)
-.++|+.|++|+..+++||.||.+||.||+.||+.||.|++++|+++.++..+|+|+++++
T Consensus 213 edeiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kLl 273 (273)
T KOG3065|consen 213 EDEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKLL 273 (273)
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhcC
Confidence 3389999999999999999999999999999999999999999999999999999999864
No 11
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=5.2e-07 Score=79.81 Aligned_cols=215 Identities=16% Similarity=0.198 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hhhh-hhhhhhhcHHHHHHHHHHHHhHHHH----HHHHH--hhc-CCCCHHHHHH
Q 024874 36 FARLYGAVEADIEAALQKAESAS--NEKN-RASVVALNAEIRRTKARLLEEVPKL----QRLAI--KKV-KGLSTEELVA 105 (261)
Q Consensus 36 F~~v~~d~~~~l~~l~~~~~~~~--~ern-r~~~~~~~~eir~~l~~L~~~l~~L----~~~l~--~k~-~~lt~~El~~ 105 (261)
|.++..++...|..++.+..... +.++ +++..... +=...|+.+..++-++ ++.+. ++. ...++.|.--
T Consensus 59 wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~-ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~e~~~ 137 (305)
T KOG0809|consen 59 WVDVAEEVDYYLSRVRRKIDELGKAHAKHLRPSFSDKR-EDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPSERLL 137 (305)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHH
Confidence 89999999988888875533211 1222 11111111 1123344444444333 33332 222 2468999999
Q ss_pred HHHHHHHHHHHHHcchhcccCCCC--------C--CCCCCCCCCCcccccCCCCCCCchhhhcChhHHHHHHH--HHHHH
Q 024874 106 RNDLVLALPDRIQAIPDGTAAAPK--------Q--SGGWGASASRTEIKFDSDGRFDDEYFQQTEESSQFRQE--YEMRK 173 (261)
Q Consensus 106 R~~~v~~l~~~l~~l~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~te~~~~~~q~--q~~~~ 173 (261)
|.++...+-.++..+...+..... + .+...-....|.. + .+.+.+....+....+.+.. -...-
T Consensus 138 ~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~--~--~~dd~d~~~~~~qe~ql~~~e~~~~~~ 213 (305)
T KOG0809|consen 138 RKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTV--D--LPDDEDFSDRTFQEQQLMLFENNEEVV 213 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccccc--c--CcchhhhhhhhHHHHHHHHHhcchHHH
Confidence 999999988888887666542110 0 0000000011110 0 00111111111100011000 01233
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 024874 174 MKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIIL 253 (261)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i~llv~il 253 (261)
.+-++.+-.|..+|..|.++..+|+.-|-+|+-++|.|+-.++++..++..+.+.|.+.-...++++++|++.+|++++|
T Consensus 214 ~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L~l~ii 293 (305)
T KOG0809|consen 214 REREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILMLTLLII 293 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999997776666665544344444433
Q ss_pred HH
Q 024874 254 GI 255 (261)
Q Consensus 254 ~i 255 (261)
++
T Consensus 294 ~l 295 (305)
T KOG0809|consen 294 AL 295 (305)
T ss_pred HH
Confidence 33
No 12
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=98.85 E-value=4.7e-08 Score=85.67 Aligned_cols=89 Identities=22% Similarity=0.409 Sum_probs=73.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC--CchHHH
Q 024874 168 EYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSS--RNFCID 245 (261)
Q Consensus 168 ~q~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~--~~~ci~ 245 (261)
.|+....+-|+.+..|+.+|..|..+..+||.-|.+|+.+.|.|+..+++|...++.+++.|.+...+.|.. |.+|+.
T Consensus 185 ~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~L 264 (283)
T COG5325 185 YQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLL 264 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHH
Confidence 344456788999999999999999999999999999999999999999999999999999999998887643 344554
Q ss_pred HHHHHHHHHHH
Q 024874 246 IVLLCIILGIA 256 (261)
Q Consensus 246 i~llv~il~i~ 256 (261)
++|+||+++++
T Consensus 265 lil~vv~lfv~ 275 (283)
T COG5325 265 LILLVVLLFVS 275 (283)
T ss_pred HHHHHHHHHHH
Confidence 55554444443
No 13
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=98.57 E-value=1.3e-06 Score=77.29 Aligned_cols=84 Identities=18% Similarity=0.211 Sum_probs=66.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 024874 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCII 252 (261)
Q Consensus 173 ~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i~llv~i 252 (261)
-..||+-.++|..-...||+.+..+++-|..-+..|+.....+|+....|..+..||+...++ +++||.++++++|++
T Consensus 162 ~~~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~--~~~~~~~~~i~~v~~ 239 (251)
T PF09753_consen 162 RNLQEDLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSK--SWGCWTWLMIFVVII 239 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHH
Confidence 347899999999999999999999999999999999999999999999999999999997654 233343333333333
Q ss_pred HHHHHH
Q 024874 253 LGIAAY 258 (261)
Q Consensus 253 l~i~~~ 258 (261)
+||+.|
T Consensus 240 ~Fi~mv 245 (251)
T PF09753_consen 240 VFIMMV 245 (251)
T ss_pred HHHHHH
Confidence 444333
No 14
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=98.45 E-value=7.8e-07 Score=76.26 Aligned_cols=80 Identities=24% Similarity=0.318 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC---CCCchHHHHHHHHHHHH
Q 024874 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLR---SSRNFCIDIVLLCIILG 254 (261)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~---~~~~~ci~i~llv~il~ 254 (261)
+.|-.|..++..|-++..+|.+++.+|.++.|-++.++..+...+..++..+.+.++..| .+.++|++ +||++|++
T Consensus 185 ~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~g-I~~iii~v 263 (280)
T COG5074 185 QEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYG-ICFIIIIV 263 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhh-hHHHHHHH
Confidence 557889999999999999999999999999999999999999999999999999988765 33344553 33333333
Q ss_pred HHHH
Q 024874 255 IAAY 258 (261)
Q Consensus 255 i~~~ 258 (261)
|++|
T Consensus 264 iv~v 267 (280)
T COG5074 264 IVVV 267 (280)
T ss_pred HHHH
Confidence 3333
No 15
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=97.53 E-value=0.0016 Score=55.74 Aligned_cols=61 Identities=11% Similarity=0.153 Sum_probs=56.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 024874 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (261)
Q Consensus 175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~ 235 (261)
-|.+-.+.|..-++.||..|.+.++-|++-|+.+......+|.+...|..++.++.+.-++
T Consensus 152 lQeeLaesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ks 212 (244)
T KOG2678|consen 152 LQEELAESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKS 212 (244)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHh
Confidence 4667778899999999999999999999999999999999999999999999999996554
No 16
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.022 Score=48.69 Aligned_cols=80 Identities=15% Similarity=0.254 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Q 024874 180 LDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIILGIAAYL 259 (261)
Q Consensus 180 Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i~llv~il~i~~~i 259 (261)
|..=+......-++|..|=++|..|-+-|..--.-.-.+++.|.+..+-|+.+..+.-.. +|.+.+++++.+++|++++
T Consensus 137 l~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~n-k~~~~aii~~l~~~il~il 215 (220)
T KOG1666|consen 137 LKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRN-KFTLTAIIALLVLAILLIL 215 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 333444556667888888899999999988888888888888888888888877654333 3433344444444444444
Q ss_pred c
Q 024874 260 Y 260 (261)
Q Consensus 260 ~ 260 (261)
|
T Consensus 216 Y 216 (220)
T KOG1666|consen 216 Y 216 (220)
T ss_pred H
Confidence 4
No 17
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=97.32 E-value=0.0056 Score=45.78 Aligned_cols=83 Identities=12% Similarity=0.144 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Q 024874 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIILGIAA 257 (261)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i~llv~il~i~~ 257 (261)
+.|......+..--+.+..--++|.+|..-|..+++..+..++.|..+.+-++++-+... ..+|.+++.++++++++++
T Consensus 8 ~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~-~D~~li~~~~~~f~~~v~y 86 (92)
T PF03908_consen 8 ESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDK-TDRILIFFAFLFFLLVVLY 86 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHH
Confidence 344444444555555555666789999999999999999999999999999999666533 3456665666666666677
Q ss_pred HhcC
Q 024874 258 YLYK 261 (261)
Q Consensus 258 ~i~~ 261 (261)
++|+
T Consensus 87 I~~r 90 (92)
T PF03908_consen 87 ILWR 90 (92)
T ss_pred Hhhh
Confidence 7763
No 18
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.0095 Score=46.19 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=12.2
Q ss_pred HHhhHHHHHHHHHHHHhHHHHH
Q 024874 203 RQVPLMDEIDTKVDRATADLKN 224 (261)
Q Consensus 203 ~Q~~lLd~l~~~vd~~~~~l~~ 224 (261)
+-.+-|++|++..|.....=..
T Consensus 54 ER~ekL~~L~drad~L~~~as~ 75 (116)
T KOG0860|consen 54 ERGEKLDELDDRADQLQAGASQ 75 (116)
T ss_pred HhcchHHHHHHHHHHHHHHHHH
Confidence 3445567777766665444333
No 19
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=96.92 E-value=0.012 Score=43.43 Aligned_cols=55 Identities=18% Similarity=0.378 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---HHHHHHHHHHHH
Q 024874 177 DQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRAT---ADLKNTNVRLKH 231 (261)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~---~~l~~~~~rl~~ 231 (261)
++.+..+...|...+++...=-+.+-+-++-|+.|++..+.-. ....+..+++++
T Consensus 2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r 59 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKR 59 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3445555555555555544444555556666666666554433 333444444443
No 20
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.23 Score=42.59 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC
Q 024874 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSS 239 (261)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~ 239 (261)
..|..-+..+..+=..|.+|=+-+.+|+..|-.+..+|-.....|+-.+.-|.-+-+.++..
T Consensus 129 d~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~D 190 (213)
T KOG3251|consen 129 DSLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVRED 190 (213)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhh
Confidence 45666667777777888889999999999999999999999999998888887665555544
No 21
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.32 Score=41.86 Aligned_cols=58 Identities=17% Similarity=0.218 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 024874 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (261)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~ 235 (261)
..|+.=...|..+=++|.+-.+-+..|+.+|..+..+|..+..++=..|.=+.++-.+
T Consensus 149 ~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~k 206 (231)
T KOG3208|consen 149 DHINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIK 206 (231)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 4556666677777888999999999999999999999999999999999999886555
No 22
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.032 Score=50.35 Aligned_cols=74 Identities=18% Similarity=0.141 Sum_probs=64.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCchHHH
Q 024874 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCID 245 (261)
Q Consensus 172 ~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~ 245 (261)
.+.+|++....|...|-.+-.+=..|.+-|-.|..-||-|-+.+..++..+..+|..+.++...++..+.|+..
T Consensus 226 ~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf 299 (316)
T KOG3894|consen 226 ELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLF 299 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHH
Confidence 45567777888888888888888899999999999999999999999999999999999988876666767663
No 23
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=0.044 Score=49.67 Aligned_cols=84 Identities=14% Similarity=0.157 Sum_probs=63.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 024874 171 MRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLC 250 (261)
Q Consensus 171 ~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i~llv 250 (261)
....+.+..|.+|++.-..+..+...=|+-|+.=..-...-.+.|+++.+.+.+|- ..-++.|++.++|+++++++
T Consensus 206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv----~~qkkaRK~k~i~ii~~iii 281 (297)
T KOG0810|consen 206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAV----KYQKKARKWKIIIIIILIII 281 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhceeeeehHHHHH
Confidence 45667889999999999988888888888888888888888888888888888874 34556677777777555554
Q ss_pred HHHHHHHH
Q 024874 251 IILGIAAY 258 (261)
Q Consensus 251 ~il~i~~~ 258 (261)
++++++++
T Consensus 282 ~~v~v~~i 289 (297)
T KOG0810|consen 282 IVVLVVVI 289 (297)
T ss_pred HHHHhhhh
Confidence 44444433
No 24
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.34 E-value=0.45 Score=42.53 Aligned_cols=96 Identities=16% Similarity=0.130 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCchH
Q 024874 164 QFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFC 243 (261)
Q Consensus 164 ~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~c 243 (261)
+.+++.++.+.+....+-++.+....|..|...=|+-|+.=..-++....+|..++..|.++.+-=++..+. ...-.|
T Consensus 173 ~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~--~~~ll~ 250 (269)
T KOG0811|consen 173 DLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKK--KCILLL 250 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--hhhhhH
Confidence 345666677889999999999999999999999999999999999999999999999999998776664433 244777
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 024874 244 IDIVLLCIILGIAAYLYK 261 (261)
Q Consensus 244 i~i~llv~il~i~~~i~~ 261 (261)
+.+++++++.++++++++
T Consensus 251 v~~~v~lii~l~i~~~~~ 268 (269)
T KOG0811|consen 251 VGGPVGLIIGLIIAGIAA 268 (269)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 777777777776666653
No 25
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=95.24 E-value=0.35 Score=42.07 Aligned_cols=75 Identities=9% Similarity=0.136 Sum_probs=43.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCC-chHHHHHHHH
Q 024874 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSR-NFCIDIVLLC 250 (261)
Q Consensus 172 ~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~-~~ci~i~llv 250 (261)
.|.+.-+-+..++..|....++ ++.=+.-+.+...+|....+++.++-+-... ..+.+--| ..|++|++++
T Consensus 193 t~ael~qLfndm~~~V~eq~e~-------Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRa-aRkkki~c~gI~~iii~vi 264 (280)
T COG5074 193 TMAELTQLFNDMEELVIEQQEN-------VDVIDKNVEDAQENVEQGVGHTDKAVKSARA-ARKKKIRCYGICFIIIIVI 264 (280)
T ss_pred HHHHHHHHHHHHHHHHHhhcch-------HHHHHhhHhhHHhhHHHhhhhHHHHHHHHHH-HHhcceehhhhHHHHHHHH
Confidence 3344444444444444444444 4444445566777888888888888877544 66667666 5566555555
Q ss_pred HHHH
Q 024874 251 IILG 254 (261)
Q Consensus 251 ~il~ 254 (261)
+.|+
T Consensus 265 v~vv 268 (280)
T COG5074 265 VVVV 268 (280)
T ss_pred HHHH
Confidence 4444
No 26
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=95.16 E-value=0.56 Score=32.39 Aligned_cols=60 Identities=17% Similarity=0.245 Sum_probs=54.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 024874 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVT 234 (261)
Q Consensus 175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~ 234 (261)
+-...|+.-...+...-++|.++-.+|..|.+.|..+..+++.+...+..+++-++.+-.
T Consensus 5 ~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~r 64 (66)
T PF12352_consen 5 RESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISR 64 (66)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHc
Confidence 334578888889999999999999999999999999999999999999999999988654
No 27
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=95.15 E-value=0.34 Score=34.36 Aligned_cols=62 Identities=16% Similarity=0.304 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhc
Q 024874 195 HDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIILGIAAYLY 260 (261)
Q Consensus 195 ~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i~llv~il~i~~~i~ 260 (261)
..+...++.+.+-++.++..-+.....+...+.+++++-. ..+|.+-+++=.++.++++++.
T Consensus 9 ~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~----n~kW~~r~iiGaiI~~i~~~i~ 70 (71)
T PF10779_consen 9 NRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS----NTKWIWRTIIGAIITAIIYLII 70 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566667778888888888888889999999998543 2345554444444455555543
No 28
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.43 E-value=3.2 Score=36.41 Aligned_cols=89 Identities=16% Similarity=0.112 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCchH
Q 024874 164 QFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFC 243 (261)
Q Consensus 164 ~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~c 243 (261)
..+++|...+......+..+.+....+++--..=|.=++....-+|.++..++++..++..++. +.. +.+.++-..
T Consensus 145 qm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~-~~s---~~~~~~~il 220 (235)
T KOG3202|consen 145 QMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR-MAS---QCSQWCAIL 220 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc---cccchhHHH
Confidence 3456666666667777777777777766666666777889999999999999999999999998 543 678888666
Q ss_pred HHHHHHHHHHHHH
Q 024874 244 IDIVLLCIILGIA 256 (261)
Q Consensus 244 i~i~llv~il~i~ 256 (261)
+++.+++++++|+
T Consensus 221 ~l~~~~~lvv~i~ 233 (235)
T KOG3202|consen 221 LLVGLLLLVVIIF 233 (235)
T ss_pred HHHHHHHHHHHHh
Confidence 6666665555554
No 29
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.11 E-value=1.8 Score=33.65 Aligned_cols=48 Identities=15% Similarity=0.375 Sum_probs=24.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHH
Q 024874 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLK 223 (261)
Q Consensus 175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~ 223 (261)
+.|+-.+-+...|...-+=+.... ||++-.+-|..-.+.+.++..+|+
T Consensus 37 QvdeVv~IMr~NV~KVlER~ekL~-~L~drad~L~~~as~F~~~A~klk 84 (116)
T KOG0860|consen 37 QVDEVVDIMRENVEKVLERGEKLD-ELDDRADQLQAGASQFEKTAVKLK 84 (116)
T ss_pred HHHHHHHHHHHhHHHHHHhcchHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544444332 355555555555555555555443
No 30
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=92.18 E-value=2.3 Score=31.10 Aligned_cols=49 Identities=12% Similarity=0.297 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHH
Q 024874 177 DQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTN 226 (261)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~ 226 (261)
++--+.+.+.+..+-+-+..+.+ |+...+-|.+-...+.+...++++..
T Consensus 13 ~~v~~im~~Ni~~ll~Rge~L~~-L~~kt~~L~~~a~~F~k~a~~l~r~~ 61 (89)
T PF00957_consen 13 EEVKNIMRENIDKLLERGEKLEE-LEDKTEELSDNAKQFKKNAKKLKRKM 61 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCchHHH-HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33334444444444444444443 55555555555666666666555443
No 31
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.24 E-value=2.6 Score=37.91 Aligned_cols=86 Identities=19% Similarity=0.253 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC--Cc
Q 024874 164 QFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSS--RN 241 (261)
Q Consensus 164 ~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~--~~ 241 (261)
.+.|+-...|+..+-.+.+|++....|..|...=++-+..=....|+.+-.++.+...|-+--.++. ++|.- .-
T Consensus 220 ~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vS----SNRwLmvki 295 (311)
T KOG0812|consen 220 EYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVS----SNRWLMVKI 295 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhc----cchHHHHHH
Confidence 3445555678889999999999999999999988888888888899999999999998877666654 34532 23
Q ss_pred hHHHHHHHHHHH
Q 024874 242 FCIDIVLLCIIL 253 (261)
Q Consensus 242 ~ci~i~llv~il 253 (261)
|.+||++++|.+
T Consensus 296 F~i~ivFflvfv 307 (311)
T KOG0812|consen 296 FGILIVFFLVFV 307 (311)
T ss_pred HHHHHHHHHHHH
Confidence 555444444333
No 32
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=90.65 E-value=7.3 Score=32.46 Aligned_cols=54 Identities=22% Similarity=0.417 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Q 024874 196 DMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIILGI 255 (261)
Q Consensus 196 ~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i~llv~il~i 255 (261)
.+.+|...++.-+.+++.+++.--+.|+.....+++-+ -+||+.+++-++.+++
T Consensus 117 ~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~------lr~~~g~i~~~~a~~l 170 (177)
T PF07798_consen 117 RIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDT------LRWLVGVIFGCVALVL 170 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 45556666666666666666655555555444444322 2577755554444444
No 33
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.28 E-value=3.3 Score=37.30 Aligned_cols=90 Identities=14% Similarity=0.156 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCchHH
Q 024874 165 FRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCI 244 (261)
Q Consensus 165 ~~q~q~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci 244 (261)
...+-++...+.-+.+-+|......|+.+..+=|.=|+.=.--++.+...++.+...|.++..-=+ ++++..+.|+
T Consensus 212 ~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk----~~~k~~~i~~ 287 (305)
T KOG0809|consen 212 VVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQK----RNKKMKVILM 287 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHh----cCCceEehHH
Confidence 344555666677788999999999999999999999999888999999999999999998876544 4677888888
Q ss_pred HHHHHHHHHHHHHH
Q 024874 245 DIVLLCIILGIAAY 258 (261)
Q Consensus 245 ~i~llv~il~i~~~ 258 (261)
.+++++++|++++.
T Consensus 288 L~l~ii~llvllil 301 (305)
T KOG0809|consen 288 LTLLIIALLVLLIL 301 (305)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888877654
No 34
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=89.19 E-value=7.7 Score=29.03 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=13.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 024874 167 QEYEMRKMKQDQGLDMISEGLDTLKNM 193 (261)
Q Consensus 167 q~q~~~~~eqD~~Ld~l~~~v~~lk~~ 193 (261)
+..+...+.....|++|..++..+..+
T Consensus 14 ~rLEendk~i~~~L~~Ik~gq~~qe~v 40 (98)
T PF11166_consen 14 RRLEENDKTIFNKLDEIKDGQHDQELV 40 (98)
T ss_pred HHHHHhhHHHHHHHHHHHHhHhhHHHH
Confidence 344445555555666665555444333
No 35
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=87.94 E-value=4.8 Score=30.57 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=36.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHH
Q 024874 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKN 224 (261)
Q Consensus 175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (261)
.|.++++.|.+.|..+.+.-.....|++.|++.|+-|......-+.+|.+
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~ 99 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677777888888888888888888888888877777666555555543
No 36
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=86.04 E-value=6.1 Score=28.39 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHhHHHH
Q 024874 166 RQEYEMRKMKQDQGLDMISEGLDTLKNMAHD---MNEEVDRQVPLMDEIDTKVDRATADLK 223 (261)
Q Consensus 166 ~q~q~~~~~eqD~~Ld~l~~~v~~lk~~a~~---i~~El~~Q~~lLd~l~~~vd~~~~~l~ 223 (261)
+-....-++.-|+..|.|...|..++.-... ++..++.|..-|+.++..|...++-|.
T Consensus 6 Ll~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 6 LLVIRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILN 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455666778899999999999998887666 888899999999999998888776653
No 37
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=85.72 E-value=8.4 Score=33.92 Aligned_cols=9 Identities=0% Similarity=0.283 Sum_probs=5.4
Q ss_pred HHHHHHhhc
Q 024874 10 VDSICKKYD 18 (261)
Q Consensus 10 ~~~~~~~~~ 18 (261)
+.+++..|+
T Consensus 7 l~RLL~rcE 15 (251)
T PF09753_consen 7 LRRLLSRCE 15 (251)
T ss_pred HHHHHHHHH
Confidence 456666663
No 38
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=83.48 E-value=20 Score=32.07 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCchHHH
Q 024874 166 RQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCID 245 (261)
Q Consensus 166 ~q~q~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~ 245 (261)
.++-.+.+...-+++-+|......|+.+...=|.-|+.=..-|+.+...+..|+..|.+++..=++.-+ .+...+.++
T Consensus 190 ~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k--~~~~~Llil 267 (283)
T COG5325 190 ITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKK--CRFYLLLIL 267 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhcc--chhhHHHHH
Confidence 345556677888899999999999999999999999999999999999999999999999988888433 345555444
Q ss_pred HHHHHHHHHH
Q 024874 246 IVLLCIILGI 255 (261)
Q Consensus 246 i~llv~il~i 255 (261)
++++++++.+
T Consensus 268 ~vv~lfv~l~ 277 (283)
T COG5325 268 LVVLLFVSLI 277 (283)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 39
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.46 E-value=31 Score=29.66 Aligned_cols=41 Identities=7% Similarity=0.221 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 024874 191 KNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231 (261)
Q Consensus 191 k~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~ 231 (261)
.+....|.+++..-+..+.+|+..-.+....+..+..++..
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 117 NQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555444444433
No 40
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=82.44 E-value=17 Score=26.75 Aligned_cols=17 Identities=12% Similarity=0.102 Sum_probs=6.9
Q ss_pred HHHHHHHHhHHHHHHHH
Q 024874 211 IDTKVDRATADLKNTNV 227 (261)
Q Consensus 211 l~~~vd~~~~~l~~~~~ 227 (261)
++..+..+..-+..-.+
T Consensus 48 ~~~~l~~s~~ll~~l~r 64 (92)
T PF03908_consen 48 QSSLLKKSRKLLKKLER 64 (92)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 41
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=79.26 E-value=6.4 Score=28.98 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=17.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHcCC
Q 024874 211 IDTKVDRATADLKNTNVRLKHTVTQLRS 238 (261)
Q Consensus 211 l~~~vd~~~~~l~~~~~rl~~~~~~~~~ 238 (261)
++..+.....++...-++|+.+=+.+++
T Consensus 41 lE~E~~~l~~~l~~~E~eL~~LrkENrK 68 (85)
T PF15188_consen 41 LEKELNELKEKLENNEKELKLLRKENRK 68 (85)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhhh
Confidence 3355556666677777777775555443
No 42
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=77.80 E-value=33 Score=27.17 Aligned_cols=61 Identities=18% Similarity=0.297 Sum_probs=52.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 024874 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (261)
Q Consensus 172 ~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~ 232 (261)
..++.-+.|+.+...+....++...|.+|+..=..=+..+..+++..+..+...-.++..+
T Consensus 62 tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 62 TKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667888999999999999999999999988889999999999999988888888764
No 43
>PRK00846 hypothetical protein; Provisional
Probab=76.26 E-value=26 Score=25.27 Aligned_cols=53 Identities=9% Similarity=0.043 Sum_probs=39.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHH
Q 024874 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNT 225 (261)
Q Consensus 173 ~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~ 225 (261)
....++.|+.|...+.-+-..-..+++.|-.|...|+.+...+.....+|..+
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556778888888888888888888888888888888877777666665543
No 44
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=75.98 E-value=9.8 Score=24.46 Aligned_cols=16 Identities=38% Similarity=0.690 Sum_probs=9.8
Q ss_pred chHHHHHHHHHHHHHH
Q 024874 241 NFCIDIVLLCIILGIA 256 (261)
Q Consensus 241 ~~ci~i~llv~il~i~ 256 (261)
+||++++++++|.+++
T Consensus 34 nfclilicllli~iiv 49 (52)
T PF04272_consen 34 NFCLILICLLLICIIV 49 (52)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4888666665555444
No 45
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=75.51 E-value=1.1e+02 Score=31.86 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q 024874 72 EIRRTKARLLEEVPKLQRL 90 (261)
Q Consensus 72 eir~~l~~L~~~l~~L~~~ 90 (261)
+.++.++.+...+.+|+..
T Consensus 250 ~~~~~L~~v~~~~~~L~~~ 268 (806)
T PF05478_consen 250 ETKELLQNVNSSLKDLQEY 268 (806)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 46
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=74.05 E-value=31 Score=25.01 Aligned_cols=87 Identities=16% Similarity=0.229 Sum_probs=49.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh-hhcHHHHHHH-----------HHHHHhHHHHHHHHH-hhcCCCCH
Q 024874 34 DAFARLYGAVEADIEAALQKAESASNEKNRASVV-ALNAEIRRTK-----------ARLLEEVPKLQRLAI-KKVKGLST 100 (261)
Q Consensus 34 DpF~~v~~d~~~~l~~l~~~~~~~~~ernr~~~~-~~~~eir~~l-----------~~L~~~l~~L~~~l~-~k~~~lt~ 100 (261)
+.|+...+++...|..+............+.... ....+++..+ ..+...|..|+.... ......+.
T Consensus 3 ~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~~ 82 (103)
T PF00804_consen 3 PEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPSS 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc
Confidence 5799999999999988876654333222211110 0112333444 344444444444421 12346778
Q ss_pred HHHHHHHHHHHHHHHHHHcc
Q 024874 101 EELVARNDLVLALPDRIQAI 120 (261)
Q Consensus 101 ~El~~R~~~v~~l~~~l~~l 120 (261)
.+..-|++.+..|..++.++
T Consensus 83 ~~~ri~~nq~~~L~~kf~~~ 102 (103)
T PF00804_consen 83 NEVRIRKNQVQALSKKFQEV 102 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999888754
No 47
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=73.61 E-value=11 Score=24.19 Aligned_cols=17 Identities=35% Similarity=0.635 Sum_probs=10.1
Q ss_pred chHHHHHHHHHHHHHHH
Q 024874 241 NFCIDIVLLCIILGIAA 257 (261)
Q Consensus 241 ~~ci~i~llv~il~i~~ 257 (261)
+||++++++++|.+++.
T Consensus 34 nf~lilicllli~iivm 50 (52)
T TIGR01294 34 NFCLILICLLLICIIVM 50 (52)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 48886666655554443
No 48
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=73.19 E-value=24 Score=24.65 Aligned_cols=49 Identities=12% Similarity=0.257 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHH
Q 024874 177 DQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNT 225 (261)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~ 225 (261)
++.|+.|...+.-+-..-..+++.|-.|...||.+...+.....+|...
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666666666666677777777777777666666665554
No 49
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.81 E-value=41 Score=29.09 Aligned_cols=81 Identities=10% Similarity=0.208 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Q 024874 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIILGIAA 257 (261)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i~llv~il~i~~ 257 (261)
+.++.+.+.+..++.+...==+++-.-++.|+.+..........=+.-.+..+.+..+. ...+|..++.+++++++++.
T Consensus 134 ~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~s-l~~~~aa~~~~~~~l~f~~~ 212 (216)
T KOG0862|consen 134 RNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKS-LIRKYAAYVVFFVLLLFYVR 212 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555544444445666677777777766665554444444454544332 22344443444444444444
Q ss_pred Hh
Q 024874 258 YL 259 (261)
Q Consensus 258 ~i 259 (261)
|+
T Consensus 213 f~ 214 (216)
T KOG0862|consen 213 FI 214 (216)
T ss_pred Hh
Confidence 43
No 50
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=72.55 E-value=39 Score=26.72 Aligned_cols=91 Identities=11% Similarity=0.146 Sum_probs=49.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh-hcHHHHHHHHHHHHhHHHHHHHH----------Hhhc--CCCCH
Q 024874 34 DAFARLYGAVEADIEAALQKAESASNEKNRASVVA-LNAEIRRTKARLLEEVPKLQRLA----------IKKV--KGLST 100 (261)
Q Consensus 34 DpF~~v~~d~~~~l~~l~~~~~~~~~ernr~~~~~-~~~eir~~l~~L~~~l~~L~~~l----------~~k~--~~lt~ 100 (261)
+.|+...+++...|..+...............+.. ...+++..+..+..++..+-..+ .... .. ..
T Consensus 2 ~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~-~s 80 (151)
T cd00179 2 EEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALN-GS 80 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-Cc
Confidence 46888889998888888755433222222211111 12355555555544443332221 1100 01 34
Q ss_pred HHHHHHHHHHHHHHHHHHcchhccc
Q 024874 101 EELVARNDLVLALPDRIQAIPDGTA 125 (261)
Q Consensus 101 ~El~~R~~~v~~l~~~l~~l~~~~~ 125 (261)
.+...|+..+..|..++..+...+.
T Consensus 81 ~~~r~~~~q~~~L~~~f~~~m~~fq 105 (151)
T cd00179 81 SVDRIRKTQHSGLSKKFVEVMTEFN 105 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888877665554
No 51
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=72.32 E-value=26 Score=25.27 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=17.8
Q ss_pred HHHHHhhHHHHHHHHHHHHhHHHHH
Q 024874 200 EVDRQVPLMDEIDTKVDRATADLKN 224 (261)
Q Consensus 200 El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (261)
+.++=.+-||+++++|+-|++.+..
T Consensus 16 d~~~i~~rLD~iEeKVEftn~Ei~Q 40 (77)
T PRK01026 16 DFKEIQKRLDEIEEKVEFTNAEIFQ 40 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556788888888888887654
No 52
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=71.78 E-value=1.6e+02 Score=32.12 Aligned_cols=40 Identities=10% Similarity=0.154 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 024874 196 DMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (261)
Q Consensus 196 ~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~ 235 (261)
.+..-+..-..+|+.+++.+..+...+..++.++.++-+.
T Consensus 1588 ~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~ 1627 (1758)
T KOG0994|consen 1588 GADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETR 1627 (1758)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556677888888887777777777777765443
No 53
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=70.90 E-value=42 Score=25.17 Aligned_cols=91 Identities=13% Similarity=0.176 Sum_probs=47.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh-hcHHHHHHHHHHHHhHH-----------HHHHHHHhhcCCCCH
Q 024874 33 DDAFARLYGAVEADIEAALQKAESASNEKNRASVVA-LNAEIRRTKARLLEEVP-----------KLQRLAIKKVKGLST 100 (261)
Q Consensus 33 ~DpF~~v~~d~~~~l~~l~~~~~~~~~ernr~~~~~-~~~eir~~l~~L~~~l~-----------~L~~~l~~k~~~lt~ 100 (261)
..+|+...+++...|..+.................. ...+++..+..+..++. .|... .......+.
T Consensus 3 ~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~-~~~~~~~~~ 81 (117)
T smart00503 3 LDEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKE-NLENRASGS 81 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHhhcccCC
Confidence 367999999999998888755432222111111111 11344444444444333 33332 111111234
Q ss_pred HHHHHHHHHHHHHHHHHHcchhcc
Q 024874 101 EELVARNDLVLALPDRIQAIPDGT 124 (261)
Q Consensus 101 ~El~~R~~~v~~l~~~l~~l~~~~ 124 (261)
.+...|+.....|..++..+...+
T Consensus 82 ~~~r~~~~q~~~L~~~f~~~m~~f 105 (117)
T smart00503 82 ASDRTRKAQTEKLRKKFKEVMNEF 105 (117)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888877655444
No 54
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=70.39 E-value=73 Score=27.78 Aligned_cols=13 Identities=8% Similarity=0.043 Sum_probs=5.6
Q ss_pred HHHHhhHHHHHHH
Q 024874 201 VDRQVPLMDEIDT 213 (261)
Q Consensus 201 l~~Q~~lLd~l~~ 213 (261)
...|+..++-+.+
T Consensus 92 ~k~~~dF~~~Lq~ 104 (230)
T PF03904_consen 92 EKVHNDFQDILQD 104 (230)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 55
>PHA03386 P10 fibrous body protein; Provisional
Probab=70.35 E-value=27 Score=26.08 Aligned_cols=54 Identities=20% Similarity=0.222 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHH
Q 024874 166 RQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLK 223 (261)
Q Consensus 166 ~q~q~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~ 223 (261)
+.++..-.+.-|...+.|...|..+..- .+.|+.|...|++++.+|...++-|.
T Consensus 7 Ll~Ir~dIkavd~KVdaLQ~qV~dv~~n----~~~LDa~~~qL~~l~tkV~~Iq~iLn 60 (94)
T PHA03386 7 LTQILDAVQEVDTKVDALQTQLNGLEED----SQPLDGLPAQLTELDTKVSDIQSILT 60 (94)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc----chhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 3455666778899999999999999877 55699999999999999998877654
No 56
>PHA02819 hypothetical protein; Provisional
Probab=69.24 E-value=5.8 Score=28.01 Aligned_cols=6 Identities=33% Similarity=0.556 Sum_probs=2.3
Q ss_pred HHHHhc
Q 024874 255 IAAYLY 260 (261)
Q Consensus 255 i~~~i~ 260 (261)
++.++|
T Consensus 61 ~~~flY 66 (71)
T PHA02819 61 IFIIFY 66 (71)
T ss_pred HHHHHH
Confidence 334433
No 57
>PRK11637 AmiB activator; Provisional
Probab=68.76 E-value=99 Score=29.31 Aligned_cols=63 Identities=8% Similarity=0.112 Sum_probs=42.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Q 024874 174 MKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQL 236 (261)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~ 236 (261)
.+....|+.+...+..+...-..+..++...+.-|+.++..+......|......++..+..+
T Consensus 71 ~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~ 133 (428)
T PRK11637 71 ASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666677777777777777777777777777777777766654
No 58
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=68.34 E-value=51 Score=25.11 Aligned_cols=57 Identities=21% Similarity=0.267 Sum_probs=27.9
Q ss_pred hhhhhHHHHHHHHH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 024874 175 KQDQGLDMISEGLD--TLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231 (261)
Q Consensus 175 eqD~~Ld~l~~~v~--~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~ 231 (261)
-.++.|..+...+. .+.+.-....+.++.|++-|..+...++.....|......|..
T Consensus 34 ~~~q~L~kiE~~~~~l~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~ 92 (102)
T PF01519_consen 34 SNNQRLTKIENKLDQLAQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQS 92 (102)
T ss_dssp -HTTB-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555 2233333333555556666666655555555555444444444
No 59
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=68.27 E-value=89 Score=28.09 Aligned_cols=90 Identities=11% Similarity=0.146 Sum_probs=49.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh------------------h-------hhhcHHHHHHHHHHHHhHH
Q 024874 31 SGDDAFARLYGAVEADIEAALQKAESASNEKNRAS------------------V-------VALNAEIRRTKARLLEEVP 85 (261)
Q Consensus 31 ~~~DpF~~v~~d~~~~l~~l~~~~~~~~~ernr~~------------------~-------~~~~~eir~~l~~L~~~l~ 85 (261)
...|.|.+++.-+.+.++.++..-+-..+...+++ . .....-++.+++.+...+.
T Consensus 43 d~~~~~~q~~~~i~~k~~e~r~~r~lat~l~~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~Ekvlk~aIq~i~~~~q 122 (338)
T KOG3647|consen 43 DEEDQRDQYRSLIGDKIEELRKARELATDLTQRGTTICEMLSKELLHKESLMSAAQRPLELLEVEKVLKSAIQAIQVRLQ 122 (338)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHH
Confidence 44589999999999888887522111111222221 0 0001224445556666666
Q ss_pred HHHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHcch
Q 024874 86 KLQRLAIKKV---KGLSTEELVARNDLVLALPDRIQAIP 121 (261)
Q Consensus 86 ~L~~~l~~k~---~~lt~~El~~R~~~v~~l~~~l~~l~ 121 (261)
.++..+.... ..| ..-|++|+.-+..++.+++.+.
T Consensus 123 ~~~~~Lnnvasdea~L-~~Kierrk~ElEr~rkRle~Lq 160 (338)
T KOG3647|consen 123 SSRAQLNNVASDEAAL-GSKIERRKAELERTRKRLEALQ 160 (338)
T ss_pred HHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555542211 112 2337899999999998888765
No 60
>PHA03395 p10 fibrous body protein; Provisional
Probab=68.27 E-value=27 Score=25.77 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHHhHHH
Q 024874 166 RQEYEMRKMKQDQGLDMISEGLDTLKNMAH---DMNEEVDRQVPLMDEIDTKVDRATADL 222 (261)
Q Consensus 166 ~q~q~~~~~eqD~~Ld~l~~~v~~lk~~a~---~i~~El~~Q~~lLd~l~~~vd~~~~~l 222 (261)
+..+..-++.-|..+|.|...|..++...- .+++.|+.|..-|+.++..++.-++-|
T Consensus 6 Ll~Ir~dIkavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltti~tkv~~I~diL 65 (87)
T PHA03395 6 LLLIRQDIKAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLDTISSAVDNITDIL 65 (87)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHHHHHHHHHHHcc
Confidence 345566677889999999999999986653 678889999999999888888766543
No 61
>PRK10884 SH3 domain-containing protein; Provisional
Probab=67.78 E-value=79 Score=27.14 Aligned_cols=11 Identities=18% Similarity=0.528 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 024874 246 IVLLCIILGIA 256 (261)
Q Consensus 246 i~llv~il~i~ 256 (261)
++++.+|||++
T Consensus 180 v~~~GlllGli 190 (206)
T PRK10884 180 VAGIGLLLGLL 190 (206)
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 62
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=67.45 E-value=36 Score=23.04 Aligned_cols=51 Identities=20% Similarity=0.380 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Q 024874 179 GLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQL 236 (261)
Q Consensus 179 ~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~ 236 (261)
.+|.|+.-|+.|+..-..+..++. .+..++..+.+.-.++|.||..+...+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~-------~lr~~v~~ak~EAaRAN~RlDN~a~sY 54 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVN-------ALRADVQAAKEEAARANQRLDNIAQSY 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhHhhc
Confidence 456666666666665555555543 344445555556666666666655543
No 63
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=67.38 E-value=35 Score=24.07 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=18.2
Q ss_pred HHHHHhhHHHHHHHHHHHHhHHHHH
Q 024874 200 EVDRQVPLMDEIDTKVDRATADLKN 224 (261)
Q Consensus 200 El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (261)
|..+=.+-||+++++|+-+++.+..
T Consensus 13 d~~~i~~rLd~iEeKVEf~~~E~~Q 37 (70)
T TIGR01149 13 EFNEVMKRLDEIEEKVEFVNGEVAQ 37 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566788889998888887654
No 64
>PRK02119 hypothetical protein; Provisional
Probab=67.26 E-value=42 Score=23.81 Aligned_cols=50 Identities=12% Similarity=0.260 Sum_probs=32.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHH
Q 024874 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKN 224 (261)
Q Consensus 175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (261)
..++.|+.|...+.-+-..-..+++.|-.|...||.+...+.....+|..
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666666666666666667777777777777776665555554433
No 65
>PRK04406 hypothetical protein; Provisional
Probab=67.02 E-value=44 Score=23.90 Aligned_cols=49 Identities=10% Similarity=0.266 Sum_probs=32.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHH
Q 024874 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLK 223 (261)
Q Consensus 175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~ 223 (261)
..++.|+.|...+.-+-..-..+++.|-.|...||.+...+.....+|.
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677776666666667777777777777777666555554443
No 66
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=66.26 E-value=20 Score=26.28 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=12.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHH
Q 024874 172 RKMKQDQGLDMISEGLDTLKNM 193 (261)
Q Consensus 172 ~~~eqD~~Ld~l~~~v~~lk~~ 193 (261)
.+...+..||.|...+..|..-
T Consensus 27 E~~~ins~LD~Lns~LD~LE~r 48 (83)
T PF03670_consen 27 EYAAINSMLDQLNSCLDHLEQR 48 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3555666666666555544443
No 67
>PHA03054 IMV membrane protein; Provisional
Probab=65.40 E-value=7.2 Score=27.55 Aligned_cols=8 Identities=50% Similarity=0.833 Sum_probs=3.1
Q ss_pred HHHHHHhc
Q 024874 253 LGIAAYLY 260 (261)
Q Consensus 253 l~i~~~i~ 260 (261)
++++.++|
T Consensus 61 ~~l~~flY 68 (72)
T PHA03054 61 LLLLIYLY 68 (72)
T ss_pred HHHHHHHH
Confidence 33344443
No 68
>PRK04325 hypothetical protein; Provisional
Probab=65.32 E-value=47 Score=23.63 Aligned_cols=47 Identities=13% Similarity=0.249 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHH
Q 024874 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKN 224 (261)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (261)
+.|+.|...+.-+-..-..+++.|-.|...|+.+...+.....+|..
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666666667777777777766555555444433
No 69
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=65.16 E-value=19 Score=29.13 Aligned_cols=20 Identities=25% Similarity=0.296 Sum_probs=10.8
Q ss_pred chHHHHHHHHHHHHHHHHhc
Q 024874 241 NFCIDIVLLCIILGIAAYLY 260 (261)
Q Consensus 241 ~~ci~i~llv~il~i~~~i~ 260 (261)
+|.++++++.+|++|++.||
T Consensus 118 ~~~i~~~i~g~ll~i~~giy 137 (145)
T PF10661_consen 118 SPTILLSIGGILLAICGGIY 137 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44444444455566666665
No 70
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=65.08 E-value=75 Score=32.97 Aligned_cols=18 Identities=11% Similarity=0.255 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 024874 189 TLKNMAHDMNEEVDRQVP 206 (261)
Q Consensus 189 ~lk~~a~~i~~El~~Q~~ 206 (261)
.++..-..+++++..+.+
T Consensus 361 ~ik~~l~~~~~~i~~~a~ 378 (806)
T PF05478_consen 361 PIKRDLDSIGKQIRSQAK 378 (806)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 71
>PHA02844 putative transmembrane protein; Provisional
Probab=64.86 E-value=7.3 Score=27.81 Aligned_cols=8 Identities=25% Similarity=0.625 Sum_probs=3.2
Q ss_pred HHHHHHhc
Q 024874 253 LGIAAYLY 260 (261)
Q Consensus 253 l~i~~~i~ 260 (261)
++++.++|
T Consensus 61 ~~~~~flY 68 (75)
T PHA02844 61 ATFLTFLY 68 (75)
T ss_pred HHHHHHHH
Confidence 33344443
No 72
>PRK14762 membrane protein; Provisional
Probab=64.21 E-value=11 Score=21.11 Aligned_cols=17 Identities=18% Similarity=0.340 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHHHHH
Q 024874 242 FCIDIVLLCIILGIAAY 258 (261)
Q Consensus 242 ~ci~i~llv~il~i~~~ 258 (261)
|.+.|++++-++++.++
T Consensus 6 w~i~iifligllvvtgv 22 (27)
T PRK14762 6 WAVLIIFLIGLLVVTGV 22 (27)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 73
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=63.95 E-value=61 Score=25.56 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=39.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 024874 174 MKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTV 233 (261)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~ 233 (261)
......|..|...|+.|..+-..++...+....+=+.|+..++.+..........|+.+-
T Consensus 9 ~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~ 68 (151)
T cd00179 9 EEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELE 68 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777777776777766663445666777777777777777777776643
No 74
>PHA02650 hypothetical protein; Provisional
Probab=63.76 E-value=7.8 Score=27.98 Aligned_cols=9 Identities=11% Similarity=0.515 Sum_probs=3.6
Q ss_pred HHHHHHHhc
Q 024874 252 ILGIAAYLY 260 (261)
Q Consensus 252 il~i~~~i~ 260 (261)
+++++.|+|
T Consensus 61 i~~l~~flY 69 (81)
T PHA02650 61 IVALFSFFV 69 (81)
T ss_pred HHHHHHHHH
Confidence 333344443
No 75
>PRK00736 hypothetical protein; Provisional
Probab=63.67 E-value=48 Score=23.17 Aligned_cols=46 Identities=11% Similarity=0.228 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHH
Q 024874 179 GLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKN 224 (261)
Q Consensus 179 ~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (261)
.|+.|...+.-+-..-..+++.|-.|...||.+...+.....++..
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555666666777777777766665555555443
No 76
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=63.36 E-value=9.6 Score=24.44 Aligned_cols=18 Identities=39% Similarity=0.646 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 024874 242 FCIDIVLLCIILGIAAYL 259 (261)
Q Consensus 242 ~ci~i~llv~il~i~~~i 259 (261)
|..+|.-+++++++|+++
T Consensus 4 wlt~iFsvvIil~If~~i 21 (49)
T PF11044_consen 4 WLTTIFSVVIILGIFAWI 21 (49)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666667777777776654
No 77
>PRK11637 AmiB activator; Provisional
Probab=62.29 E-value=1.2e+02 Score=28.81 Aligned_cols=58 Identities=7% Similarity=0.142 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 024874 177 DQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVT 234 (261)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~ 234 (261)
...+..+...+..+..--.....++.....-|+.++..++.+...|.....++...-+
T Consensus 67 ~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 67 QQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555556666666666666677777777666666666666443
No 78
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=62.07 E-value=56 Score=24.06 Aligned_cols=25 Identities=8% Similarity=0.300 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 024874 179 GLDMISEGLDTLKNMAHDMNEEVDR 203 (261)
Q Consensus 179 ~Ld~l~~~v~~lk~~a~~i~~El~~ 203 (261)
.++.|+..|+.|+.....+..++..
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~ 49 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKA 49 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444443
No 79
>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans. The function is not known.
Probab=62.03 E-value=1.6e+02 Score=28.65 Aligned_cols=68 Identities=10% Similarity=0.149 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHcCCCC-chHH
Q 024874 177 DQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKV----DRATADLKNTNVRLKHTVTQLRSSR-NFCI 244 (261)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~v----d~~~~~l~~~~~rl~~~~~~~~~~~-~~ci 244 (261)
....--|...+...++++..+..-+.+--.-+...++.+ ......+..+.+--+.++.+.++++ .|+.
T Consensus 196 ~~S~llL~~l~~~W~~~s~KL~k~l~~Tl~sfr~~Nee~~~k~~~~~~~lk~~dk~Ck~il~K~~~~~c~w~~ 268 (469)
T PF10151_consen 196 KQSVLLLKHLDDEWKESSKKLSKSLKETLKSFRLKNEELLKKGKAKDESLKECDKACKVILGKMSGSSCPWTR 268 (469)
T ss_pred HHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHhHHHHHhccccchHHHHHHHHHHHHHHHhhcCCCCchHH
Confidence 334444444444444444444433333333333333333 1233455666777777777766443 4433
No 80
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.50 E-value=42 Score=29.01 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=35.4
Q ss_pred HHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHH
Q 024874 201 VDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIILGIAAY 258 (261)
Q Consensus 201 l~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i~llv~il~i~~~ 258 (261)
|..--.+|-+.+..++++..-|...++|+-+ . +--. ..+++++++++++++++
T Consensus 165 L~rar~rL~~td~~lgkS~kiL~tM~RR~~~-n---k~~~-~aii~~l~~~il~ilY~ 217 (220)
T KOG1666|consen 165 LERARERLRETDANLGKSRKILTTMTRRLIR-N---KFTL-TAIIALLVLAILLILYS 217 (220)
T ss_pred HHHHHHHHHhchhhhhHHHHHHHHHHHHHHH-H---HHHH-HHHHHHHHHHHHHHHHH
Confidence 5556678888888888888888888877754 1 2122 33446666666666655
No 81
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=60.97 E-value=1e+02 Score=26.95 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=26.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 024874 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVT 234 (261)
Q Consensus 175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~ 234 (261)
.||--=.+|.+.+..|..--.++ -+.-|+. |++=++.+..+...+..+-..|...-.
T Consensus 148 ~q~~lQeeLaesll~LArslKtn--alAfqsa-lkeDnQvl~~~~k~~D~N~~~L~~~Se 204 (244)
T KOG2678|consen 148 DQDTLQEELAESLLKLARSLKTN--ALAFQSA-LKEDNQVLGAAEKGIDVNSQGLMDVSE 204 (244)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHh--HHHHHHH-HHhhHHHHHHHHHHHhHHHHHHHhhhH
Confidence 44444445555554444333332 2333433 344445555555556655555554433
No 82
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=60.58 E-value=8.9 Score=28.16 Aligned_cols=11 Identities=27% Similarity=0.359 Sum_probs=5.9
Q ss_pred HHHHHHHHHcC
Q 024874 227 VRLKHTVTQLR 237 (261)
Q Consensus 227 ~rl~~~~~~~~ 237 (261)
.+|..++.+++
T Consensus 20 DQL~qlVsrN~ 30 (84)
T PF06143_consen 20 DQLEQLVSRNR 30 (84)
T ss_pred HHHHHHHHhCh
Confidence 45556665544
No 83
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=60.28 E-value=8.8 Score=29.06 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 024874 243 CIDIVLLCIILGIAAYLY 260 (261)
Q Consensus 243 ci~i~llv~il~i~~~i~ 260 (261)
++.++.|+++++++++||
T Consensus 65 li~lls~v~IlVily~Iy 82 (101)
T PF06024_consen 65 LISLLSFVCILVILYAIY 82 (101)
T ss_pred HHHHHHHHHHHHHHhhhe
Confidence 333444444455544444
No 84
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=59.23 E-value=68 Score=23.50 Aligned_cols=29 Identities=10% Similarity=0.090 Sum_probs=13.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024874 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDR 203 (261)
Q Consensus 175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~ 203 (261)
+.+.-.+.+...+..+...+....+++..
T Consensus 6 ~l~~l~~d~~~l~~~~~~~~~~~~~~~r~ 34 (94)
T PF05957_consen 6 ELEQLRADLEDLARSAADLAGEKADEARD 34 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33444444455454444444444444433
No 85
>PRK02793 phi X174 lysis protein; Provisional
Probab=58.66 E-value=62 Score=22.85 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHH
Q 024874 177 DQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLK 223 (261)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~ 223 (261)
++.|..|...+.-+-..-..+++.|-.|...||.+...+.....+|.
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 53 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLK 53 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555666666666666666655555444443
No 86
>PRK00295 hypothetical protein; Provisional
Probab=58.00 E-value=62 Score=22.60 Aligned_cols=46 Identities=4% Similarity=0.107 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHH
Q 024874 179 GLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKN 224 (261)
Q Consensus 179 ~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (261)
.|+.|...+.-+-..-..+++.|-.|...||.+...+.....+|..
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666677777777766665555555444
No 87
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=57.84 E-value=64 Score=22.77 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=17.6
Q ss_pred HHHHHhhHHHHHHHHHHHHhHHHHH
Q 024874 200 EVDRQVPLMDEIDTKVDRATADLKN 224 (261)
Q Consensus 200 El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (261)
|..+=.+-||+++++++-+++.+..
T Consensus 13 ~~~~i~~rLd~iEeKvEf~~~Ei~Q 37 (70)
T PF04210_consen 13 DFNEIMKRLDEIEEKVEFTNAEIAQ 37 (70)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444456788888888888877654
No 88
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=56.69 E-value=11 Score=21.27 Aligned_cols=16 Identities=19% Similarity=0.486 Sum_probs=9.0
Q ss_pred CchHHHHHHHHHHHHH
Q 024874 240 RNFCIDIVLLCIILGI 255 (261)
Q Consensus 240 ~~~ci~i~llv~il~i 255 (261)
+.|.++++|+++++++
T Consensus 6 ~gf~livVLFILLIIi 21 (26)
T TIGR01732 6 GGFALIVVLFILLVIV 21 (26)
T ss_pred cchHHHHHHHHHHHHh
Confidence 3567756665555444
No 89
>PF15106 TMEM156: TMEM156 protein family
Probab=56.53 E-value=7.8 Score=33.31 Aligned_cols=19 Identities=37% Similarity=0.668 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHhcC
Q 024874 242 FCIDIVLLCIILGIAAYLYK 261 (261)
Q Consensus 242 ~ci~i~llv~il~i~~~i~~ 261 (261)
|.+ ++|+|++|+|+++||+
T Consensus 178 WYv-LVllVfiflii~iI~K 196 (226)
T PF15106_consen 178 WYV-LVLLVFIFLIILIIYK 196 (226)
T ss_pred HHH-HHHHHHHHHHHHHHHH
Confidence 444 6777777788888874
No 90
>PHA02975 hypothetical protein; Provisional
Probab=56.22 E-value=10 Score=26.63 Aligned_cols=8 Identities=25% Similarity=0.899 Sum_probs=3.3
Q ss_pred HHHHHHhc
Q 024874 253 LGIAAYLY 260 (261)
Q Consensus 253 l~i~~~i~ 260 (261)
++++.++|
T Consensus 57 ~~~~~flY 64 (69)
T PHA02975 57 IAVFTFLY 64 (69)
T ss_pred HHHHHHHH
Confidence 33344443
No 91
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=55.10 E-value=12 Score=20.79 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=8.8
Q ss_pred CchHHHHHHHHHHHHH
Q 024874 240 RNFCIDIVLLCIILGI 255 (261)
Q Consensus 240 ~~~ci~i~llv~il~i 255 (261)
+.|.++++|+++++++
T Consensus 4 ~~FalivVLFILLiIv 19 (24)
T PF09680_consen 4 SGFALIVVLFILLIIV 19 (24)
T ss_pred ccchhHHHHHHHHHHh
Confidence 3566755655554444
No 92
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=55.09 E-value=1.4e+02 Score=26.14 Aligned_cols=33 Identities=6% Similarity=0.122 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHH
Q 024874 192 NMAHDMNEEVDRQVPLMDEIDTKVDRATADLKN 224 (261)
Q Consensus 192 ~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (261)
++...++.|+..+..-++.+-.++-.+..+.++
T Consensus 113 e~k~~~~~ei~k~r~e~~~ml~evK~~~E~y~k 145 (230)
T PF03904_consen 113 ELKNIAQNEIKKVREENKSMLQEVKQSHEKYQK 145 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334446667766665555555554444444333
No 93
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=54.74 E-value=15 Score=26.93 Aligned_cols=16 Identities=50% Similarity=0.551 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 024874 243 CIDIVLLCIILGIAAY 258 (261)
Q Consensus 243 ci~i~llv~il~i~~~ 258 (261)
.|.|+|+|+||+|++|
T Consensus 29 tILivLVIIiLlImlf 44 (85)
T PF10717_consen 29 TILIVLVIIILLIMLF 44 (85)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3434444444555444
No 94
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=54.36 E-value=14 Score=25.96 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHhcC
Q 024874 242 FCIDIVLLCIILGIAAYLYK 261 (261)
Q Consensus 242 ~ci~i~llv~il~i~~~i~~ 261 (261)
+.++++|++++.+|++-+|+
T Consensus 5 ~iLi~ICVaii~lIlY~iYn 24 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555666654
No 95
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=54.12 E-value=11 Score=33.98 Aligned_cols=22 Identities=9% Similarity=0.324 Sum_probs=15.0
Q ss_pred CCchHHHHHHHHHHHHHHHHhc
Q 024874 239 SRNFCIDIVLLCIILGIAAYLY 260 (261)
Q Consensus 239 ~~~~ci~i~llv~il~i~~~i~ 260 (261)
++..-..++|++++++|++|||
T Consensus 260 Pcgiaalvllil~vvliiLYiW 281 (295)
T TIGR01478 260 PYGIAALVLIILTVVLIILYIW 281 (295)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666677777888998
No 96
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=52.94 E-value=8.2 Score=30.00 Aligned_cols=15 Identities=33% Similarity=0.405 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhcC
Q 024874 247 VLLCIILGIAAYLYK 261 (261)
Q Consensus 247 ~llv~il~i~~~i~~ 261 (261)
.-++++++||+|||+
T Consensus 67 atliillviffviy~ 81 (150)
T PF06084_consen 67 ATLIILLVIFFVIYS 81 (150)
T ss_pred HHHHHHHHHhheeEe
Confidence 334455666677774
No 97
>PTZ00370 STEVOR; Provisional
Probab=52.60 E-value=12 Score=33.81 Aligned_cols=22 Identities=14% Similarity=0.339 Sum_probs=15.0
Q ss_pred CCchHHHHHHHHHHHHHHHHhc
Q 024874 239 SRNFCIDIVLLCIILGIAAYLY 260 (261)
Q Consensus 239 ~~~~ci~i~llv~il~i~~~i~ 260 (261)
++..-..++|++++++|++|||
T Consensus 256 Pygiaalvllil~vvliilYiw 277 (296)
T PTZ00370 256 PYGIAALVLLILAVVLIILYIW 277 (296)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666677777888998
No 98
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=52.24 E-value=97 Score=23.11 Aligned_cols=61 Identities=15% Similarity=0.223 Sum_probs=35.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 024874 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTV 233 (261)
Q Consensus 173 ~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~ 233 (261)
..+....|..|...|..|..+-..++...+.-..+=+.|+..++.+.......+..|+.+-
T Consensus 10 v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~ 70 (117)
T smart00503 10 VEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELE 70 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666655542233445566666666666666666665543
No 99
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=52.23 E-value=82 Score=22.27 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=18.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHhHHHHH
Q 024874 199 EEVDRQVPLMDEIDTKVDRATADLKN 224 (261)
Q Consensus 199 ~El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (261)
+|.++-++-||+++.+|+-+.+.+..
T Consensus 15 ~dfne~~kRLdeieekvef~~~Ev~Q 40 (75)
T COG4064 15 DDFNEIHKRLDEIEEKVEFVNGEVYQ 40 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 35566677888888888888776543
No 100
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=52.09 E-value=2e+02 Score=31.31 Aligned_cols=81 Identities=19% Similarity=0.263 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhhccCchhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHH--HhhhhhhhhhhhhcHHHHHHHHHH
Q 024874 3 VIDILTRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQKAES--ASNEKNRASVVALNAEIRRTKARL 80 (261)
Q Consensus 3 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~DpF~~v~~d~~~~l~~l~~~~~~--~~~ernr~~~~~~~~eir~~l~~L 80 (261)
|.++-.|+++++.++ ... +.++ + --||..-+.+++..|+.++..+.. .+.+-... ......++|+.|..+
T Consensus 1173 l~~L~~rt~rl~~~A--~~l-~~tG--v--~gay~s~f~~me~kl~~ir~il~~~svs~~~i~~-l~~~~~~lr~~l~~~ 1244 (1758)
T KOG0994|consen 1173 LQELALRTHRLINRA--KEL-KQTG--V--LGAYASRFLDMEEKLEEIRAILSAPSVSAEDIAQ-LASATESLRRQLQAL 1244 (1758)
T ss_pred HHHHHHHHHHHHHHH--HHh-hhcc--C--chhhHhHHHHHHHHHHHHHHHhcCCCccHHHHHH-HHHHHHHHHHHHHHH
Confidence 567888999999988 111 2232 1 248888999998888888654321 00000111 112224677777777
Q ss_pred HHhHHHHHHHH
Q 024874 81 LEEVPKLQRLA 91 (261)
Q Consensus 81 ~~~l~~L~~~l 91 (261)
.+.|..++..+
T Consensus 1245 ~e~L~~~E~~L 1255 (1758)
T KOG0994|consen 1245 TEDLPQEEETL 1255 (1758)
T ss_pred Hhhhhhhhhhh
Confidence 77776666554
No 101
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.63 E-value=1.9e+02 Score=25.95 Aligned_cols=74 Identities=9% Similarity=0.325 Sum_probs=40.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCCchHHHHHH
Q 024874 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQL--RSSRNFCIDIVL 248 (261)
Q Consensus 175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~--~~~~~~ci~i~l 248 (261)
.....|+.|-..|..+-.-......|++.-+.-|..+..+++.+...|..-+.-|++=++.+ .++...+|.+||
T Consensus 49 ~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil 124 (265)
T COG3883 49 NIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATSYIDVIL 124 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 33445555555555555555555556666666666666666666666666555555444432 123345666654
No 102
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=50.47 E-value=11 Score=36.58 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Q 024874 209 DEIDTKVDRATADLKNTNVRLKHT 232 (261)
Q Consensus 209 d~l~~~vd~~~~~l~~~~~rl~~~ 232 (261)
+.+++.++++.+.|+..++-|..+
T Consensus 441 ~~vn~sL~~A~~~L~~Sn~iL~~v 464 (490)
T PF00523_consen 441 GQVNNSLNNAKDLLDKSNQILDSV 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666666666666666554
No 103
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=50.30 E-value=1.1e+02 Score=23.32 Aligned_cols=80 Identities=13% Similarity=0.078 Sum_probs=49.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 024874 171 MRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVP-LMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLL 249 (261)
Q Consensus 171 ~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~-lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i~ll 249 (261)
+.+.+.-.-+|.+.+.+..-...|.+=..|+....+ .|.+....+..+.+.+....+....-...+=..+.||-+-+--
T Consensus 12 ~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~PWq~VGvaA 91 (104)
T COG4575 12 QLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENPWQGVGVAA 91 (104)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 344555566777777777777777777777776654 6777777777776666555555555444443345688744443
Q ss_pred H
Q 024874 250 C 250 (261)
Q Consensus 250 v 250 (261)
.
T Consensus 92 a 92 (104)
T COG4575 92 A 92 (104)
T ss_pred H
Confidence 3
No 104
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.51 E-value=1.2e+02 Score=23.58 Aligned_cols=20 Identities=10% Similarity=0.004 Sum_probs=7.7
Q ss_pred chHHHHHHHHHHHHHHHHhc
Q 024874 241 NFCIDIVLLCIILGIAAYLY 260 (261)
Q Consensus 241 ~~ci~i~llv~il~i~~~i~ 260 (261)
...+++-+++++++.++++|
T Consensus 95 g~~l~~~m~~f~lV~~fi~~ 114 (118)
T KOG3385|consen 95 GISLLCWMAVFSLVAFFILW 114 (118)
T ss_pred CcchHHHHHHHHHHHHHHhh
Confidence 33333333333333343333
No 105
>PF09771 Tmemb_18A: Transmembrane protein 188; InterPro: IPR019168 The function of this family of transmembrane proteins has not, as yet, been determined.
Probab=49.15 E-value=56 Score=25.85 Aligned_cols=43 Identities=23% Similarity=0.433 Sum_probs=32.6
Q ss_pred HhHHHHHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHHHHHhc
Q 024874 218 ATADLKNTNVRLKHTVTQLRS-SRNFCIDIVLLCIILGIAAYLY 260 (261)
Q Consensus 218 ~~~~l~~~~~rl~~~~~~~~~-~~~~ci~i~llv~il~i~~~i~ 260 (261)
+-+.|+.=-+||.+++...+. ...|=++++++.+.+++.++.|
T Consensus 5 ~ceDLkaFErRLtEvI~~l~Pst~RWRiiL~v~svct~v~A~~w 48 (125)
T PF09771_consen 5 ACEDLKAFERRLTEVINSLQPSTTRWRIILVVVSVCTAVGAWHW 48 (125)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 356678888999999998874 4478776777777777777776
No 106
>PHA03049 IMV membrane protein; Provisional
Probab=47.69 E-value=21 Score=24.91 Aligned_cols=19 Identities=26% Similarity=0.259 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 024874 243 CIDIVLLCIILGIAAYLYK 261 (261)
Q Consensus 243 ci~i~llv~il~i~~~i~~ 261 (261)
.++++|++++.++++-+|+
T Consensus 6 ~l~iICVaIi~lIvYgiYn 24 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3434555555555555554
No 107
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.61 E-value=30 Score=29.60 Aligned_cols=14 Identities=7% Similarity=0.204 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 024874 181 DMISEGLDTLKNMA 194 (261)
Q Consensus 181 d~l~~~v~~lk~~a 194 (261)
..+.+.|+.+|.+-
T Consensus 128 skvkaqv~evk~vM 141 (217)
T KOG0859|consen 128 AKVKAQVTEVKGVM 141 (217)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444555555543
No 108
>PRK15396 murein lipoprotein; Provisional
Probab=47.46 E-value=1.1e+02 Score=22.19 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=9.9
Q ss_pred HHhHHHHHHHHHHHHHHHHc
Q 024874 217 RATADLKNTNVRLKHTVTQL 236 (261)
Q Consensus 217 ~~~~~l~~~~~rl~~~~~~~ 236 (261)
.+.+.-.++|.|+..+..++
T Consensus 57 ~a~~eA~raN~RlDn~~~sy 76 (78)
T PRK15396 57 AAKDDAARANQRLDNQATKY 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34444555555555554443
No 109
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=47.26 E-value=1e+02 Score=22.08 Aligned_cols=62 Identities=21% Similarity=0.295 Sum_probs=36.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 024874 171 MRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (261)
Q Consensus 171 ~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~ 232 (261)
....+....|+.|...|..|..+-..+-.....-..+=.+++.-+..+.........+++.+
T Consensus 7 ~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l 68 (103)
T PF00804_consen 7 DEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQL 68 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777776666555444223444555555555555555555555553
No 110
>PF11315 Med30: Mediator complex subunit 30; InterPro: IPR021019 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med30 is a metazoan-specific subunit of Mediator [], having no homologues in yeasts.
Probab=47.00 E-value=1.6e+02 Score=24.07 Aligned_cols=19 Identities=11% Similarity=0.282 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHhhccC
Q 024874 2 SVIDILTRVDSICKKYDKY 20 (261)
Q Consensus 2 ~~~~~~~r~~~~~~~~~~~ 20 (261)
++.-+.+|++.||.||..+
T Consensus 56 ~i~~LFkkLRlIYekCne~ 74 (150)
T PF11315_consen 56 TIKVLFKKLRLIYEKCNEN 74 (150)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4677899999999999663
No 111
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=46.40 E-value=49 Score=24.99 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 024874 164 QFRQEYEMRKMKQDQGLDMISEGLDTLKNMA 194 (261)
Q Consensus 164 ~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~~a 194 (261)
.++..|...|..|.+.+|.|+.+|+.|.+-.
T Consensus 82 ~Lm~rQN~mm~~qqqsidslsksvgklahkv 112 (121)
T PF10669_consen 82 SLMNRQNNMMKQQQQSIDSLSKSVGKLAHKV 112 (121)
T ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4566777788888899999999999987654
No 112
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=45.80 E-value=1.9e+02 Score=26.98 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=20.5
Q ss_pred HHHHHHHHhHHHHHHHHHhhcCCCCHH-HHHHHHHHHHHHHHHHHcc
Q 024874 75 RTKARLLEEVPKLQRLAIKKVKGLSTE-ELVARNDLVLALPDRIQAI 120 (261)
Q Consensus 75 ~~l~~L~~~l~~L~~~l~~k~~~lt~~-El~~R~~~v~~l~~~l~~l 120 (261)
+.+..|.++|...+..+..+...+|.+ =+.+-++.+..|+.++.+|
T Consensus 301 ~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qM 347 (359)
T PF10498_consen 301 RELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQM 347 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444433332233322 2445555555566555554
No 113
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=45.56 E-value=1.6e+02 Score=30.51 Aligned_cols=8 Identities=38% Similarity=0.571 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 024874 209 DEIDTKVD 216 (261)
Q Consensus 209 d~l~~~vd 216 (261)
+.++.-++
T Consensus 302 ~~i~~l~~ 309 (914)
T PRK11466 302 SEVSQLVD 309 (914)
T ss_pred HHHHHHHH
Confidence 33333333
No 114
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.48 E-value=2e+02 Score=25.83 Aligned_cols=46 Identities=11% Similarity=0.311 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHH
Q 024874 182 MISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNV 227 (261)
Q Consensus 182 ~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~ 227 (261)
.+..-|..|-.....+..+++....-+|.+...+......|.....
T Consensus 49 ~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 49 NIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333
No 115
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=45.38 E-value=25 Score=21.59 Aligned_cols=10 Identities=0% Similarity=0.218 Sum_probs=4.9
Q ss_pred HHHHHHHHcC
Q 024874 228 RLKHTVTQLR 237 (261)
Q Consensus 228 rl~~~~~~~~ 237 (261)
+..+.+..+.
T Consensus 4 k~hkai~aYE 13 (38)
T PF09125_consen 4 KAHKAIEAYE 13 (38)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3445555544
No 116
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=44.92 E-value=17 Score=22.84 Aligned_cols=13 Identities=23% Similarity=0.720 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHhc
Q 024874 248 LLCIILGIAAYLY 260 (261)
Q Consensus 248 llv~il~i~~~i~ 260 (261)
.+++++++++|+|
T Consensus 23 vI~~vl~~~l~~~ 35 (40)
T PF08693_consen 23 VIIIVLGAFLFFW 35 (40)
T ss_pred HHHHHHHHHhheE
Confidence 3333444444443
No 117
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=44.32 E-value=1.9e+02 Score=24.22 Aligned_cols=69 Identities=14% Similarity=0.222 Sum_probs=54.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Q 024874 168 EYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQL 236 (261)
Q Consensus 168 ~q~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~ 236 (261)
..+..+.+....|..+...+..|..-......+|...+..+..+.+.....+-.+.....++.++=..+
T Consensus 106 ~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En 174 (194)
T PF08614_consen 106 ELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEEN 174 (194)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566678888999999999999999999999999999999999999999999998888888865543
No 118
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=44.11 E-value=21 Score=24.39 Aligned_cols=23 Identities=13% Similarity=0.330 Sum_probs=12.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHhc
Q 024874 238 SSRNFCIDIVLLCIILGIAAYLY 260 (261)
Q Consensus 238 ~~~~~ci~i~llv~il~i~~~i~ 260 (261)
+...+.-||+|+.+|++|.-++|
T Consensus 5 ~~~~mtriVLLISfiIlfgRl~Y 27 (59)
T PF11119_consen 5 KNSRMTRIVLLISFIILFGRLIY 27 (59)
T ss_pred ccchHHHHHHHHHHHHHHHHHHH
Confidence 33455555666655555543544
No 119
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=43.36 E-value=3.4e+02 Score=26.88 Aligned_cols=61 Identities=13% Similarity=0.282 Sum_probs=31.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHH---HHHHHH
Q 024874 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRL---KHTVTQ 235 (261)
Q Consensus 175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl---~~~~~~ 235 (261)
.+...-..+...+..+...-..|.++...=.+-|..|..+=-.|...+.+..+++ ++.+++
T Consensus 372 ~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek 435 (570)
T COG4477 372 AQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEK 435 (570)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555555566666655555555555555445554444444444 444444
No 120
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=42.93 E-value=1.1e+02 Score=24.34 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHcch
Q 024874 72 EIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAIP 121 (261)
Q Consensus 72 eir~~l~~L~~~l~~L~~~l~~k~~~lt~~El~~R~~~v~~l~~~l~~l~ 121 (261)
|.+..+...+..+.+|+.. +..+..-|..|+.+++.+.
T Consensus 84 e~qsli~~yE~~~~kLe~e------------~~~Kdsei~~Lr~~L~~~~ 121 (131)
T PF04859_consen 84 EQQSLIKTYEIVVKKLEAE------------LRAKDSEIDRLREKLDELN 121 (131)
T ss_pred HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666555 4555566667776666554
No 121
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=42.53 E-value=99 Score=20.44 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=36.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHH
Q 024874 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVR 228 (261)
Q Consensus 173 ~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~r 228 (261)
+.+....+..|......++..-..=|.-|+.=..-+|.....+.++..+|..+.+.
T Consensus 6 l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~ 61 (63)
T PF05739_consen 6 LDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKY 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455556666666666666666666666666666677777777777777776654
No 122
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=42.27 E-value=80 Score=23.20 Aligned_cols=12 Identities=8% Similarity=0.166 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 024874 222 LKNTNVRLKHTV 233 (261)
Q Consensus 222 l~~~~~rl~~~~ 233 (261)
+.+...=++.++
T Consensus 26 VsrN~sfirdFv 37 (84)
T PF06143_consen 26 VSRNRSFIRDFV 37 (84)
T ss_pred HHhChHHHHHHH
Confidence 333333344443
No 123
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=42.22 E-value=24 Score=22.70 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 024874 243 CIDIVLLCIILGIAAYLYK 261 (261)
Q Consensus 243 ci~i~llv~il~i~~~i~~ 261 (261)
.+-+.+++.++++++|+|+
T Consensus 6 lip~sl~l~~~~l~~f~Wa 24 (45)
T PF03597_consen 6 LIPVSLILGLIALAAFLWA 24 (45)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555666667777773
No 124
>PHA02692 hypothetical protein; Provisional
Probab=42.21 E-value=25 Score=24.79 Aligned_cols=8 Identities=13% Similarity=0.227 Sum_probs=3.0
Q ss_pred HHHHHHhc
Q 024874 253 LGIAAYLY 260 (261)
Q Consensus 253 l~i~~~i~ 260 (261)
++++.++|
T Consensus 59 ~vll~flY 66 (70)
T PHA02692 59 GVLLCFHY 66 (70)
T ss_pred HHHHHHHH
Confidence 33334433
No 125
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=41.61 E-value=1.8e+02 Score=23.28 Aligned_cols=66 Identities=15% Similarity=0.298 Sum_probs=44.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 024874 170 EMRKMKQDQGLDMISEGLDTLKNMAHDMNE---EVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (261)
Q Consensus 170 ~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~---El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~ 235 (261)
+..+...+..||.+...+...+..+..-.. ..+.=++-|.-|+..++.+..+|..++.+|...-.+
T Consensus 41 ~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ 109 (143)
T PF12718_consen 41 QKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVK 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777776665543 344556677778888888888888888877764433
No 126
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=41.47 E-value=3.2e+02 Score=28.31 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 024874 207 LMDEIDTKVDRATADLKNTNVRLKHTVT 234 (261)
Q Consensus 207 lLd~l~~~vd~~~~~l~~~~~rl~~~~~ 234 (261)
+.+.++.-++................+.
T Consensus 300 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 327 (968)
T TIGR02956 300 LNTTVSQLVNAQNQRTEAAVSDLLMTLS 327 (968)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444333
No 127
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=41.42 E-value=4.8e+02 Score=28.05 Aligned_cols=54 Identities=17% Similarity=0.398 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 024874 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231 (261)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~ 231 (261)
..+......+..+...-..+-.|+..+..-++.+..+++.+...|...-.++..
T Consensus 829 ~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~ 882 (1174)
T KOG0933|consen 829 KEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRD 882 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHh
Confidence 333334444444444444444455555555555555555555555444444433
No 128
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=41.30 E-value=25 Score=23.32 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 024874 243 CIDIVLLCIILGIAAYLYK 261 (261)
Q Consensus 243 ci~i~llv~il~i~~~i~~ 261 (261)
.+-+-+++.++++++|+|+
T Consensus 7 LIpiSl~l~~~~l~~f~Wa 25 (51)
T TIGR00847 7 LIPISLLLGGVGLVAFLWS 25 (51)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555566666777773
No 129
>PF12423 KIF1B: Kinesin protein 1B; InterPro: IPR022140 This domain family is found in eukaryotes, and is approximately 50 amino acids in length. The family is found in association with PF00225 from PFAM, PF00498 from PFAM. KIF1B is an anterograde motor for transport of mitochondria in axons of neuronal cells.
Probab=41.01 E-value=5.8 Score=25.40 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhccC---chhhhhccCCCCCcHHHHH
Q 024874 7 LTRVDSICKKYDKY---DVEKQRETNVSGDDAFARL 39 (261)
Q Consensus 7 ~~r~~~~~~~~~~~---~~~~~~~~~~~~~DpF~~v 39 (261)
.+|+...++.|..| +.+.... .....|||++-
T Consensus 2 ~nRl~~MRemYq~~~~~~~~~~~~-~~~~~DPF~e~ 36 (45)
T PF12423_consen 2 ENRLFDMREMYQQYKENDFPEYDQ-HFKEDDPFYEP 36 (45)
T ss_pred ccHHHHHHHHHHHHHhcCCccccc-cCCCCCCCCCC
Confidence 46777788888777 3222211 33577999865
No 130
>PF08650 DASH_Dad4: DASH complex subunit Dad4; InterPro: IPR013959 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=39.73 E-value=1e+02 Score=21.90 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=18.2
Q ss_pred HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 024874 203 RQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (261)
Q Consensus 203 ~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~ 235 (261)
.|..+|..|-..|++-+..+...++.|..+..+
T Consensus 8 ~Q~~LLsRIi~NvekLNEsv~~lN~~l~eIn~~ 40 (72)
T PF08650_consen 8 QQSNLLSRIIGNVEKLNESVAELNQELEEINRA 40 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455555555555555555555555555554443
No 131
>PRK04654 sec-independent translocase; Provisional
Probab=39.10 E-value=2.6e+02 Score=24.23 Aligned_cols=19 Identities=5% Similarity=-0.011 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024874 183 ISEGLDTLKNMAHDMNEEV 201 (261)
Q Consensus 183 l~~~v~~lk~~a~~i~~El 201 (261)
++..+.+++.++..+.+|+
T Consensus 32 lGk~irk~R~~~~~vk~El 50 (214)
T PRK04654 32 AGLWVRRARMQWDSVKQEL 50 (214)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344443333333333
No 132
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=38.39 E-value=2.6e+02 Score=24.16 Aligned_cols=64 Identities=13% Similarity=0.268 Sum_probs=46.1
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 024874 170 EMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTV 233 (261)
Q Consensus 170 ~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~ 233 (261)
.......|..++.|...+...+..+.......++-..-|.-++...+++..++..+-.++..+=
T Consensus 84 E~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE 147 (237)
T PF00261_consen 84 ENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELE 147 (237)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Confidence 3444466777777888888888887777777777777777777777777777777777766643
No 133
>PF12495 Vip3A_N: Vegetative insecticide protein 3A N terminal ; InterPro: IPR022180 This family of proteins is found in bacteria. Proteins in this family are typically between 170 and 789 amino acids in length. The family is found in association with PF02018 from PFAM. Vip3A represents a novel class of proteins insecticidal to lepidopteran insect larvae.
Probab=37.36 E-value=1.7e+02 Score=23.16 Aligned_cols=65 Identities=11% Similarity=0.224 Sum_probs=43.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 024874 171 MRKMKQDQGLDMISEGLDTLKN-------MAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (261)
Q Consensus 171 ~~~~eqD~~Ld~l~~~v~~lk~-------~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~ 235 (261)
+.+.+.-..||.+.+.++.|-. ++..+-.=..+||.+|.+++.+.+..+..|+.---++..++..
T Consensus 45 ~lln~is~kldging~l~dliaqgnln~el~ke~lkianeqn~~ln~vn~~l~~in~~l~~ylpkitsmls~ 116 (177)
T PF12495_consen 45 QLLNQISDKLDGINGSLNDLIAQGNLNSELSKEILKIANEQNQMLNNVNNQLNSINSMLNTYLPKITSMLSD 116 (177)
T ss_pred HHHHHhcccccccCCcHHHHHHcCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3445667778877777776643 3333333446899999999999998888777655555444443
No 134
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.16 E-value=3.1e+02 Score=24.65 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 024874 186 GLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (261)
Q Consensus 186 ~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~ 232 (261)
.+..-+..|..--.+|..|.+.|+.++..+|.....+..+-+.+..+
T Consensus 87 ~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l 133 (273)
T KOG3065|consen 87 LAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTEL 133 (273)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHH
Confidence 34555667777888999999999999999999999999999988774
No 135
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=37.11 E-value=3.1e+02 Score=24.52 Aligned_cols=46 Identities=15% Similarity=0.144 Sum_probs=22.5
Q ss_pred HHHHHHHHHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHc
Q 024874 74 RRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQA 119 (261)
Q Consensus 74 r~~l~~L~~~l~~L~~~l~~k~~~lt~~El~~R~~~v~~l~~~l~~ 119 (261)
-..++.++.+++++++.+......-.-.++-..++.+..++..+..
T Consensus 148 ~~~l~~l~~~~~~le~~l~~~~~~~~l~~l~~l~~~l~~l~~~l~~ 193 (318)
T TIGR00383 148 FPLLENIEDELEELEDEIISGPTSTLMDEILSLRTELLALRRSLWP 193 (318)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777778888877643321111123344444444444444433
No 136
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=36.78 E-value=1.5e+02 Score=20.69 Aligned_cols=40 Identities=10% Similarity=0.098 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Q 024874 209 DEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIILGIA 256 (261)
Q Consensus 209 d~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i~llv~il~i~ 256 (261)
...+.+.......|..-....+++.. +++-.++.++++++
T Consensus 30 ~~~e~~i~~~~~~l~~I~~n~kW~~r--------~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 30 AANEKDIKNLNKQLEKIKSNTKWIWR--------TIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 34444466677777777777888764 34455555555544
No 137
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=36.47 E-value=1.7e+02 Score=21.36 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 024874 179 GLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTV 233 (261)
Q Consensus 179 ~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~ 233 (261)
.|-.|...|..|..+...+|.. .+-.++-+.|..-+..+...+......|+.+.
T Consensus 4 ~l~~in~~v~~l~k~~~~lGt~-~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~ 57 (102)
T PF14523_consen 4 NLFKINQNVSQLEKLVNQLGTP-RDSQELREKIHQLIQKTNQLIKEISELLKKLN 57 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHH-SS-S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666643 33444555555556666655555555555543
No 138
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=34.68 E-value=35 Score=25.72 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=11.6
Q ss_pred CCCCchHHHH--HHHHHHHHHHHH
Q 024874 237 RSSRNFCIDI--VLLCIILGIAAY 258 (261)
Q Consensus 237 ~~~~~~ci~i--~llv~il~i~~~ 258 (261)
+.+.+|.+++ +++.+++++|++
T Consensus 19 r~~~~w~vi~~gilillLllifav 42 (98)
T COG5416 19 RMKGQWTVIIVGILILLLLLIFAV 42 (98)
T ss_pred hccceeeHHHHHHHHHHHHHHHHH
Confidence 3445776656 344444555544
No 139
>PRK15396 murein lipoprotein; Provisional
Probab=34.38 E-value=1.8e+02 Score=21.02 Aligned_cols=36 Identities=11% Similarity=0.293 Sum_probs=19.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 024874 176 QDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEI 211 (261)
Q Consensus 176 qD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l 211 (261)
.....+.+...+..++.-+..-.+|-..=|.-||.+
T Consensus 37 L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 37 LNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555543
No 140
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.01 E-value=65 Score=27.63 Aligned_cols=18 Identities=0% Similarity=0.128 Sum_probs=8.8
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 024874 176 QDQGLDMISEGLDTLKNM 193 (261)
Q Consensus 176 qD~~Ld~l~~~v~~lk~~ 193 (261)
.+-.+|.|+..=+..-++
T Consensus 120 ~~p~id~lskvkaqv~ev 137 (217)
T KOG0859|consen 120 EHPEISKLAKVKAQVTEV 137 (217)
T ss_pred cCcchhHHHHHHHHHHHH
Confidence 344466665544444333
No 141
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=33.82 E-value=3.7e+02 Score=24.56 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=6.9
Q ss_pred HHHHHHhHHHHHHH
Q 024874 77 KARLLEEVPKLQRL 90 (261)
Q Consensus 77 l~~L~~~l~~L~~~ 90 (261)
++.+..+++.|.+.
T Consensus 148 lE~~~~~ld~ls~~ 161 (316)
T PRK11085 148 IENIYSDLEKLSRV 161 (316)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444455555444
No 142
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=33.42 E-value=1.7e+02 Score=20.42 Aligned_cols=27 Identities=7% Similarity=0.101 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHcchhc
Q 024874 97 GLSTEELVARNDLVLALPDRIQAIPDG 123 (261)
Q Consensus 97 ~lt~~El~~R~~~v~~l~~~l~~l~~~ 123 (261)
.+++.+-..=..-|..+++++..++..
T Consensus 50 ~~p~s~r~~~~~kl~~yr~~l~~lk~~ 76 (79)
T PF05008_consen 50 SLPPSERNQYKSKLRSYRSELKKLKKE 76 (79)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566555566666666666666543
No 143
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.18 E-value=2.2e+02 Score=24.85 Aligned_cols=25 Identities=8% Similarity=0.232 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 024874 207 LMDEIDTKVDRATADLKNTNVRLKH 231 (261)
Q Consensus 207 lLd~l~~~vd~~~~~l~~~~~rl~~ 231 (261)
-+..+...+--.+.-|++.+.|=++
T Consensus 185 k~~~~a~r~P~IN~Ll~kIk~kkrr 209 (231)
T KOG3208|consen 185 KVNNIANRFPAINQLLQKIKIKKRR 209 (231)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhhh
Confidence 3445666677777777776655444
No 144
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=32.88 E-value=3.3e+02 Score=23.68 Aligned_cols=46 Identities=7% Similarity=0.207 Sum_probs=25.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhH
Q 024874 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATA 220 (261)
Q Consensus 175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~ 220 (261)
+.-..+..+..-+..|...-..+...++.|+.-+++++..++....
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555556666666666666665555443
No 145
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=32.66 E-value=39 Score=24.46 Aligned_cols=14 Identities=29% Similarity=0.316 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHHHH
Q 024874 242 FCIDIVLLCIILGI 255 (261)
Q Consensus 242 ~ci~i~llv~il~i 255 (261)
|-++|+++|++|+|
T Consensus 7 ~ellIIlvIvlllF 20 (78)
T PRK00720 7 WHWLIVLAVVLLLF 20 (78)
T ss_pred HHHHHHHHHHHHHh
Confidence 44444444444444
No 146
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=32.64 E-value=2.1e+02 Score=21.23 Aligned_cols=51 Identities=12% Similarity=0.292 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHH-hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCchH
Q 024874 193 MAHDMNEEVDRQ-VPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFC 243 (261)
Q Consensus 193 ~a~~i~~El~~Q-~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~c 243 (261)
-+..+..-|+.. ..||++|+..-......|.....++..-+....+...||
T Consensus 47 ~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~ 98 (127)
T smart00502 47 AFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFT 98 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433 468888888888888888888888777777655444443
No 147
>COG1775 HgdB Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism]
Probab=32.46 E-value=1e+02 Score=28.91 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHhhccCch-hhhhccCCCCCcHHHHHHHH
Q 024874 2 SVIDILTRVDSICKKYDKYDV-EKQRETNVSGDDAFARLYGA 42 (261)
Q Consensus 2 ~~~~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~DpF~~v~~d 42 (261)
+++|++.|.++.++.+-+..- ..+.-++.++.|-|..+...
T Consensus 164 ~L~da~~r~N~~rea~~k~~kL~~~~P~plsg~D~~~~~~~~ 205 (379)
T COG1775 164 KLRDAIARYNRLREALAKLYKLAKHKPSPLSGSDAFNVMAFA 205 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHHHHhhHH
Confidence 689999999999988755443 45666677888887777655
No 148
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=32.33 E-value=25 Score=26.00 Aligned_cols=6 Identities=0% Similarity=0.124 Sum_probs=2.5
Q ss_pred HHHHHc
Q 024874 231 HTVTQL 236 (261)
Q Consensus 231 ~~~~~~ 236 (261)
+++++.
T Consensus 3 ~i~kK~ 8 (96)
T PF13800_consen 3 KILKKA 8 (96)
T ss_pred hHHHHH
Confidence 344443
No 149
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=32.16 E-value=72 Score=24.27 Aligned_cols=11 Identities=9% Similarity=0.277 Sum_probs=6.8
Q ss_pred HHHHHHHHHcC
Q 024874 227 VRLKHTVTQLR 237 (261)
Q Consensus 227 ~rl~~~~~~~~ 237 (261)
+++++.+++.+
T Consensus 2 ~~~~k~~~~~k 12 (107)
T COG4537 2 KKMKKFLKHKK 12 (107)
T ss_pred hhHHHHHHhcc
Confidence 45667777643
No 150
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=31.93 E-value=78 Score=20.54 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHHHHH
Q 024874 242 FCIDIVLLCIILGIA 256 (261)
Q Consensus 242 ~ci~i~llv~il~i~ 256 (261)
++++++++++++.++
T Consensus 20 ~gl~il~~~vl~ai~ 34 (56)
T PF12911_consen 20 IGLIILLILVLLAIF 34 (56)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 151
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=31.74 E-value=2.9e+02 Score=22.66 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 024874 179 GLDMISEGLDTLKNMAHDMNE 199 (261)
Q Consensus 179 ~Ld~l~~~v~~lk~~a~~i~~ 199 (261)
..+.|..-.++|+.+|..+..
T Consensus 53 ~~~~lr~Rydrlr~va~rvQ~ 73 (156)
T PF08372_consen 53 PPDSLRMRYDRLRSVAGRVQN 73 (156)
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 444555566667766665543
No 152
>PHA03164 hypothetical protein; Provisional
Probab=31.66 E-value=48 Score=23.86 Aligned_cols=7 Identities=14% Similarity=0.487 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 024874 243 CIDIVLL 249 (261)
Q Consensus 243 ci~i~ll 249 (261)
|++|..|
T Consensus 65 gLaIamI 71 (88)
T PHA03164 65 GLAIAMI 71 (88)
T ss_pred HHHHHHH
Confidence 4433333
No 153
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=31.55 E-value=2.2e+02 Score=21.12 Aligned_cols=61 Identities=10% Similarity=0.244 Sum_probs=33.9
Q ss_pred hhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 024874 175 KQDQGLDMISEGLDTLK-NMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (261)
Q Consensus 175 eqD~~Ld~l~~~v~~lk-~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~ 235 (261)
+.+...+.|...+..-+ .+-..+..+-......|+..-..+...-..+..+...+..++..
T Consensus 43 ~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~ 104 (127)
T smart00502 43 QIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEALNS 104 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444444444333 23334444444555666666666666666666666667676654
No 154
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=31.24 E-value=2e+02 Score=20.68 Aligned_cols=47 Identities=13% Similarity=0.383 Sum_probs=24.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHH
Q 024874 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATAD 221 (261)
Q Consensus 172 ~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~ 221 (261)
.+.+....++.+...+.. +..++.+=+...|.++++++.+++.++.-
T Consensus 27 ~l~~~~~ti~~l~~~~~~---i~~e~~~ll~~~n~l~~dv~~k~~~v~~~ 73 (90)
T PF06103_consen 27 TLDEVNKTIDTLQEQVDP---ITKEINDLLHNTNELLEDVNEKLEKVDPV 73 (90)
T ss_pred HHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344444444444444333 23444445566677777776666655543
No 155
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=31.20 E-value=48 Score=22.69 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=16.2
Q ss_pred HHHHhhccCchhhhhccCCCCCcHHHHHHHH
Q 024874 12 SICKKYDKYDVEKQRETNVSGDDAFARLYGA 42 (261)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~DpF~~v~~d 42 (261)
+.++.| -.||++-++--. .+|||..|+..
T Consensus 26 a~L~ec-nMDpnea~qrLL-~qD~FheVk~k 54 (60)
T PF06972_consen 26 AMLKEC-NMDPNEAVQRLL-SQDPFHEVKSK 54 (60)
T ss_pred HHHHHh-CCCHHHHHHHHH-hcCcHHHHHHh
Confidence 455566 355554443111 46999988743
No 156
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=31.15 E-value=43 Score=23.92 Aligned_cols=13 Identities=31% Similarity=0.399 Sum_probs=5.4
Q ss_pred hHHHHHHHHHHHH
Q 024874 242 FCIDIVLLCIILG 254 (261)
Q Consensus 242 ~ci~i~llv~il~ 254 (261)
|-++|+++|++|+
T Consensus 7 ~elliIl~Ivlll 19 (73)
T PRK02958 7 WHWLIVLVIVVLV 19 (73)
T ss_pred HHHHHHHHHHHHH
Confidence 4443444443333
No 157
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=30.97 E-value=2.1e+02 Score=22.32 Aligned_cols=48 Identities=8% Similarity=0.314 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC
Q 024874 183 ISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLR 237 (261)
Q Consensus 183 l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~ 237 (261)
|.+.+..++++...|..+++ .++.+.--++.+.+.++..|.++++..|
T Consensus 2 lKdt~~kmkeL~e~~~~D~~-------K~EKGNKAAGtRaRK~sleLeKLaKefR 49 (123)
T PF07432_consen 2 LKDTFKKMKELLESFEADAE-------KAEKGNKAAGTRARKASLELEKLAKEFR 49 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHH-------HHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666655553 4688888889999999999999887654
No 158
>PF00737 PsbH: Photosystem II 10 kDa phosphoprotein; InterPro: IPR001056 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight phosphoprotein PsbH found in PSII. The phosphorylation site of PsbH is located in the N terminus, where reversible phosphorylation is light-dependent and redox-controlled. PsbH is necessary for the photoprotection of PSII, being required for: (1) the rapid degradation of photodamaged D1 core protein to prevent further oxidative damage to the PSII core, and (2) the insertion of newly synthesised D1 protein into the thylakoid membrane []. PsbH may also regulate the transfer of electrons from D2 (Qa) to D1 (Qb) in the reaction core.; GO: 0042301 phosphate ion binding, 0015979 photosynthesis, 0050821 protein stabilization, 0009523 photosystem II, 0016020 membrane; PDB: 3PRR_H 2AXT_h 3BZ2_H 3BZ1_H 4FBY_W 3PRQ_H 3KZI_H 1S5L_h 3A0H_H 3ARC_H ....
Probab=30.58 E-value=64 Score=21.43 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 024874 244 IDIVLLCIILGIAAYLYK 261 (261)
Q Consensus 244 i~i~llv~il~i~~~i~~ 261 (261)
+.+++|++.+++++-|||
T Consensus 30 ~~m~lf~vfl~iiL~IyN 47 (52)
T PF00737_consen 30 VFMALFAVFLLIILEIYN 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 334455555555666665
No 159
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=30.50 E-value=22 Score=35.35 Aligned_cols=9 Identities=11% Similarity=0.287 Sum_probs=4.7
Q ss_pred HHHHHHHHH
Q 024874 193 MAHDMNEEV 201 (261)
Q Consensus 193 ~a~~i~~El 201 (261)
--.++..|+
T Consensus 509 T~LNLt~EI 517 (610)
T PF01601_consen 509 TYLNLTSEI 517 (610)
T ss_dssp HHHHHHHHH
T ss_pred ceeccHHHH
Confidence 335555555
No 160
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=30.44 E-value=2.4e+02 Score=21.31 Aligned_cols=61 Identities=21% Similarity=0.363 Sum_probs=37.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 024874 168 EYEMRKMKQDQGLDMISEGLDTL--KNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (261)
Q Consensus 168 ~q~~~~~eqD~~Ld~l~~~v~~l--k~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~ 235 (261)
.....+..+|..|+.|...+..| +.-...+.-++ .++..++.....+|+..+..+.-++++
T Consensus 39 ~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l-------~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 39 KLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLEL-------AELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888777776 55555555544 445555555566666666666666654
No 161
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=30.33 E-value=2.3e+02 Score=24.85 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=12.8
Q ss_pred HHHHHHhHHHHHHHHHhhcCCCCHHHH
Q 024874 77 KARLLEEVPKLQRLAIKKVKGLSTEEL 103 (261)
Q Consensus 77 l~~L~~~l~~L~~~l~~k~~~lt~~El 103 (261)
+..|...+.+..+++.. -.++++|.
T Consensus 50 iralT~t~~~a~~al~~--~~~~~~e~ 74 (232)
T PF09577_consen 50 IRALTETIEEAKKALTS--VSMSEEEK 74 (232)
T ss_pred HHHHHHHHHHHHHHHHc--cCCCHHHH
Confidence 44555555555555332 24566653
No 162
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=29.89 E-value=17 Score=28.92 Aligned_cols=55 Identities=13% Similarity=0.259 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHhHHHHHHHHHH
Q 024874 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDE---IDTKVDRATADLKNTNVRL 229 (261)
Q Consensus 175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~---l~~~vd~~~~~l~~~~~rl 229 (261)
.-...|+.....|..|...+-.+-+.+..-....+. |...+.+....+..+....
T Consensus 49 ~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~~~~ls~nI~~IrelI~qAR~~A 106 (138)
T PF06009_consen 49 DANKALDDANNSVKNLEQLAPDLLDKLKPLENLSENNSNLSRNISRIRELIAQARDAA 106 (138)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666555555555444444444 3344433333333333333
No 163
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=29.87 E-value=45 Score=21.63 Aligned_cols=8 Identities=13% Similarity=0.409 Sum_probs=3.3
Q ss_pred HHHHHHhc
Q 024874 253 LGIAAYLY 260 (261)
Q Consensus 253 l~i~~~i~ 260 (261)
+.+++|+|
T Consensus 25 ~~F~~F~~ 32 (54)
T PF06716_consen 25 VVFIWFVY 32 (54)
T ss_pred HHHHHHHH
Confidence 33344443
No 164
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=29.60 E-value=51 Score=25.93 Aligned_cols=7 Identities=43% Similarity=0.287 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 024874 252 ILGIAAY 258 (261)
Q Consensus 252 il~i~~~ 258 (261)
|++|+|+
T Consensus 81 Illi~y~ 87 (122)
T PF01102_consen 81 ILLISYC 87 (122)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 165
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=29.10 E-value=63 Score=21.74 Aligned_cols=13 Identities=31% Similarity=0.738 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHHH
Q 024874 242 FCIDIVLLCIILG 254 (261)
Q Consensus 242 ~ci~i~llv~il~ 254 (261)
|.|++++|.+|++
T Consensus 6 wlIIviVlgvIig 18 (55)
T PF11446_consen 6 WLIIVIVLGVIIG 18 (55)
T ss_pred hHHHHHHHHHHHh
Confidence 4444444444444
No 166
>PRK09738 small toxic polypeptide; Provisional
Probab=29.00 E-value=60 Score=21.61 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=8.7
Q ss_pred CchHHHHHHHHHHHHH
Q 024874 240 RNFCIDIVLLCIILGI 255 (261)
Q Consensus 240 ~~~ci~i~llv~il~i 255 (261)
.-||++++++.++++.
T Consensus 8 ~~~~livvCiTvL~f~ 23 (52)
T PRK09738 8 LVWCVLIVCLTLLIFT 23 (52)
T ss_pred ehhhHHHHHHHHHHHH
Confidence 3567755555444443
No 167
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=28.95 E-value=53 Score=24.80 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=10.3
Q ss_pred CCCchHHHHHHHHHHHHH
Q 024874 238 SSRNFCIDIVLLCIILGI 255 (261)
Q Consensus 238 ~~~~~ci~i~llv~il~i 255 (261)
.+|+|.|++.++++.+++
T Consensus 48 ~WRN~GIli~f~i~f~~~ 65 (103)
T PF06422_consen 48 RWRNFGILIAFWIFFIVL 65 (103)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 467787755555444444
No 168
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=28.74 E-value=96 Score=18.92 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHh
Q 024874 246 IVLLCIILGIAAYL 259 (261)
Q Consensus 246 i~llv~il~i~~~i 259 (261)
++++++-+++++++
T Consensus 11 vV~ffv~LFifGfl 24 (36)
T PF02532_consen 11 VVIFFVSLFIFGFL 24 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcccc
Confidence 34444445555554
No 169
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=28.60 E-value=48 Score=28.07 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=16.1
Q ss_pred chHHHHHHHHHHHHHHHHhcC
Q 024874 241 NFCIDIVLLCIILGIAAYLYK 261 (261)
Q Consensus 241 ~~ci~i~llv~il~i~~~i~~ 261 (261)
.|.-.|+|.+-++.|++|+|+
T Consensus 162 SFiGGIVL~LGv~aI~ff~~K 182 (186)
T PF05283_consen 162 SFIGGIVLTLGVLAIIFFLYK 182 (186)
T ss_pred hhhhHHHHHHHHHHHHHHHhh
Confidence 577777887777888888875
No 170
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=28.37 E-value=2.4e+02 Score=25.89 Aligned_cols=63 Identities=10% Similarity=0.159 Sum_probs=40.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 024874 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (261)
Q Consensus 173 ~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~ 235 (261)
+.+....|......+..+...-..+..+.+....-...+...++.+..+|.++.+=+..+-..
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E 292 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGE 292 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcch
Confidence 334445555555555555555555566666666667778888888888888888766655444
No 171
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=28.25 E-value=4.5e+02 Score=23.74 Aligned_cols=67 Identities=10% Similarity=0.169 Sum_probs=32.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCch
Q 024874 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNF 242 (261)
Q Consensus 172 ~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ 242 (261)
..+-.+++|+.+...|..+......=...|..+-.-|.+....+ ..|......|..+++..+..+.|
T Consensus 7 l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~----~~l~~~~~~L~~aL~~~k~rG~w 73 (304)
T PF02646_consen 7 LLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEI----QQLSQEASNLTSALKNSKTRGNW 73 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHhCCCchhhH
Confidence 33344455555555555444443332333444433344433333 45566666677777743334455
No 172
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=28.24 E-value=1.7e+02 Score=25.41 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 024874 194 AHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLK 230 (261)
Q Consensus 194 a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~ 230 (261)
+...-.|+..-+.-|..++...+++..+|..+..+|.
T Consensus 31 ~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~ 67 (237)
T PF00261_consen 31 AEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLE 67 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444443333
No 173
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=28.19 E-value=2e+02 Score=19.68 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCC-----chHHHHHHHHHHHHHHHHh
Q 024874 220 ADLKNTNVRLKHTVTQLRSSR-----NFCIDIVLLCIILGIAAYL 259 (261)
Q Consensus 220 ~~l~~~~~rl~~~~~~~~~~~-----~~ci~i~llv~il~i~~~i 259 (261)
..+..--+.-.++++..+++. ..+....+-++++|+++|+
T Consensus 8 e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~~~iG~~i~G~iGf~ 52 (61)
T PRK09400 8 ENVKNFLEDYKRVLKVARKPTREEFLLVAKVTGLGILLIGLIGFI 52 (61)
T ss_pred HhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455556666655443 2233333444555555554
No 174
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=28.18 E-value=1.2e+02 Score=29.86 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=13.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q 024874 34 DAFARLYGAVEADIEAALQKA 54 (261)
Q Consensus 34 DpF~~v~~d~~~~l~~l~~~~ 54 (261)
-.|..+-=.+.-+...|..+.
T Consensus 195 ~~F~~lsL~f~~D~~TLe~R~ 215 (538)
T PF05781_consen 195 AEFLRLSLGFKCDRFTLEKRL 215 (538)
T ss_pred HHHHHHHHHhhhhhhhHHHHH
Confidence 457776666666666665443
No 175
>PRK02793 phi X174 lysis protein; Provisional
Probab=27.64 E-value=2.2e+02 Score=20.00 Aligned_cols=22 Identities=9% Similarity=0.053 Sum_probs=11.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH
Q 024874 171 MRKMKQDQGLDMISEGLDTLKN 192 (261)
Q Consensus 171 ~~~~eqD~~Ld~l~~~v~~lk~ 192 (261)
..+.-|+..++.|+..|.++..
T Consensus 15 ~~lafQe~tIe~Ln~~v~~Qq~ 36 (72)
T PRK02793 15 SRLAFQEITIEELNVTVTAHEM 36 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554443
No 176
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=27.40 E-value=3.1e+02 Score=21.64 Aligned_cols=34 Identities=15% Similarity=0.448 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 024874 183 ISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVD 216 (261)
Q Consensus 183 l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd 216 (261)
+...|..++.=...|+.+++.=+.+.-.|+.+++
T Consensus 87 i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 87 IKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444443
No 177
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=27.37 E-value=2e+02 Score=19.43 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=27.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 024874 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEID 212 (261)
Q Consensus 175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~ 212 (261)
.....++.|+.-|..++.=+....+|...-|.-||.+-
T Consensus 14 ~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 14 TLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 44456777777777777777777777777777777654
No 178
>PRK09759 small toxic polypeptide; Provisional
Probab=27.23 E-value=73 Score=21.02 Aligned_cols=15 Identities=0% Similarity=0.137 Sum_probs=8.1
Q ss_pred chHHHHHHHHHHHHH
Q 024874 241 NFCIDIVLLCIILGI 255 (261)
Q Consensus 241 ~~ci~i~llv~il~i 255 (261)
-||++++++.++++.
T Consensus 7 l~~liivCiTvL~f~ 21 (50)
T PRK09759 7 LLSLIVICFTLLFFT 21 (50)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467755555444443
No 179
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=27.22 E-value=6.2e+02 Score=25.04 Aligned_cols=48 Identities=8% Similarity=0.099 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhhccCchh--hhh---------ccCCCCCcHHHHHHHHHHHHHHHH
Q 024874 3 VIDILTRVDSICKKYDKYDVE--KQR---------ETNVSGDDAFARLYGAVEADIEAA 50 (261)
Q Consensus 3 ~~~~~~r~~~~~~~~~~~~~~--~~~---------~~~~~~~DpF~~v~~d~~~~l~~l 50 (261)
+.+.|.++=.++++|...-|+ +.. .++.=..+.+......+..++..+
T Consensus 210 l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~ 268 (569)
T PRK04778 210 LEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDEN 268 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHH
Confidence 456667777777777664443 111 122224455666666666666663
No 180
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=27.17 E-value=50 Score=30.10 Aligned_cols=10 Identities=10% Similarity=0.096 Sum_probs=6.2
Q ss_pred HHHHhhccCc
Q 024874 12 SICKKYDKYD 21 (261)
Q Consensus 12 ~~~~~~~~~~ 21 (261)
++|-+|+-|.
T Consensus 19 R~LcECely~ 28 (299)
T PF02009_consen 19 RSLCECELYT 28 (299)
T ss_pred cchhhhcccc
Confidence 5566776665
No 181
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=26.71 E-value=73 Score=20.47 Aligned_cols=15 Identities=20% Similarity=0.762 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHhc
Q 024874 246 IVLLCIILGIAAYLY 260 (261)
Q Consensus 246 i~llv~il~i~~~i~ 260 (261)
++++++.++++++.|
T Consensus 16 v~~~~~F~gi~~w~~ 30 (49)
T PF05545_consen 16 VLFFVFFIGIVIWAY 30 (49)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 182
>PF06643 DUF1158: Protein of unknown function (DUF1158); InterPro: IPR010590 This family consists of several enterobacterial YbdJ proteins. The function of this family is unknown
Probab=26.30 E-value=70 Score=22.82 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=14.0
Q ss_pred chHHHHHHHHHH-HHHHHHhc
Q 024874 241 NFCIDIVLLCII-LGIAAYLY 260 (261)
Q Consensus 241 ~~ci~i~llv~i-l~i~~~i~ 260 (261)
-||+|.+++.++ .+++=|+|
T Consensus 54 ~FClWFLlLGaiEy~viRfiw 74 (82)
T PF06643_consen 54 VFCLWFLLLGAIEYFVIRFIW 74 (82)
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 478888888766 55556666
No 183
>PHA02675 ORF104 fusion protein; Provisional
Probab=26.18 E-value=2.7e+02 Score=20.46 Aligned_cols=40 Identities=10% Similarity=0.217 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHH
Q 024874 190 LKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRL 229 (261)
Q Consensus 190 lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl 229 (261)
|-.....+-+.-..-+..|+.|+.+.|.....|-..++++
T Consensus 42 L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml~L~KKI 81 (90)
T PHA02675 42 LLDSYKTITDCCRETGARLDRLERHLETLREALLKLNTKI 81 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344445555555556666666666666555555555444
No 184
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=26.18 E-value=4.9e+02 Score=23.53 Aligned_cols=20 Identities=5% Similarity=0.102 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q 024874 73 IRRTKARLLEEVPKLQRLAI 92 (261)
Q Consensus 73 ir~~l~~L~~~l~~L~~~l~ 92 (261)
.-..++.+..+++.+++.+.
T Consensus 152 ~~~~le~i~~~~~~ie~~l~ 171 (322)
T COG0598 152 YFPVLEQIEDELEAIEDQLL 171 (322)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 34456777777888877743
No 185
>PLN00055 photosystem II reaction center protein H; Provisional
Probab=25.71 E-value=85 Score=22.37 Aligned_cols=18 Identities=22% Similarity=0.576 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 024874 244 IDIVLLCIILGIAAYLYK 261 (261)
Q Consensus 244 i~i~llv~il~i~~~i~~ 261 (261)
+.+.||.+++++++=|||
T Consensus 45 ~~m~lf~vfl~iileiyN 62 (73)
T PLN00055 45 VAMALFAVFLSIILEIYN 62 (73)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 445555555666666665
No 186
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=25.67 E-value=69 Score=21.80 Aligned_cols=19 Identities=26% Similarity=0.541 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 024874 243 CIDIVLLCIILGIAAYLYK 261 (261)
Q Consensus 243 ci~i~llv~il~i~~~i~~ 261 (261)
.+-+.++.+.+++.+|+|.
T Consensus 7 Lipvsi~l~~v~l~~flWa 25 (58)
T COG3197 7 LIPVSILLGAVGLGAFLWA 25 (58)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3434555556667777774
No 187
>CHL00066 psbH photosystem II protein H
Probab=25.63 E-value=86 Score=22.32 Aligned_cols=18 Identities=22% Similarity=0.576 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 024874 244 IDIVLLCIILGIAAYLYK 261 (261)
Q Consensus 244 i~i~llv~il~i~~~i~~ 261 (261)
+.+.||.+++++++=|||
T Consensus 45 v~m~lf~vfl~iiLeiyN 62 (73)
T CHL00066 45 VAMALFAVFLSIILEIYN 62 (73)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 444555555666666665
No 188
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=25.59 E-value=23 Score=24.61 Aligned_cols=14 Identities=43% Similarity=0.425 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhc
Q 024874 247 VLLCIILGIAAYLY 260 (261)
Q Consensus 247 ~llv~il~i~~~i~ 260 (261)
.+++++++|++++|
T Consensus 21 gll~ailLIlf~iy 34 (64)
T PF01034_consen 21 GLLFAILLILFLIY 34 (64)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444445544
No 189
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=25.01 E-value=63 Score=23.21 Aligned_cols=8 Identities=25% Similarity=0.368 Sum_probs=2.9
Q ss_pred hHHHHHHH
Q 024874 242 FCIDIVLL 249 (261)
Q Consensus 242 ~ci~i~ll 249 (261)
|-++|+++
T Consensus 7 ~ellIIlv 14 (75)
T PRK04561 7 WHWLVVLV 14 (75)
T ss_pred HHHHHHHH
Confidence 33333333
No 190
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=24.96 E-value=1.8e+02 Score=19.48 Aligned_cols=19 Identities=26% Similarity=0.630 Sum_probs=11.7
Q ss_pred CchHHHHHHHHHHHHHHHH
Q 024874 240 RNFCIDIVLLCIILGIAAY 258 (261)
Q Consensus 240 ~~~ci~i~llv~il~i~~~ 258 (261)
+.|.+.++++++++++.++
T Consensus 29 rP~~Ll~~li~Vv~gl~ll 47 (55)
T PF11293_consen 29 RPWRLLIVLIVVVIGLGLL 47 (55)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4677666666666665443
No 191
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=24.85 E-value=6.9e+02 Score=24.73 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhhccCch
Q 024874 3 VIDILTRVDSICKKYDKYDV 22 (261)
Q Consensus 3 ~~~~~~r~~~~~~~~~~~~~ 22 (261)
+.+.|.++=.++++|...-|
T Consensus 206 l~~~~e~IP~l~~~l~~~~P 225 (560)
T PF06160_consen 206 LEEIMEDIPKLYKELQKEFP 225 (560)
T ss_pred HHHHHHHhHHHHHHHHHHhH
Confidence 45667777777777755444
No 192
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=24.27 E-value=4.4e+02 Score=22.34 Aligned_cols=70 Identities=13% Similarity=0.213 Sum_probs=49.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHcC
Q 024874 167 QEYEMRKMKQDQGLDMISEGLDTLK----NMAHDMNEEVDRQVPLMDEID--TKVDRATADLKNTNVRLKHTVTQLR 237 (261)
Q Consensus 167 q~q~~~~~eqD~~Ld~l~~~v~~lk----~~a~~i~~El~~Q~~lLd~l~--~~vd~~~~~l~~~~~rl~~~~~~~~ 237 (261)
......+.+.+.+|..++..+..+- ++|..++ ++...-.+|..++ ..+..+-.++..+..++..+.....
T Consensus 7 ~~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~-efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~~a 82 (216)
T cd07627 7 IEKKQYLDSLESQLKQLYKSLELVSSQRKELASATE-EFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLERQA 82 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677788888777777665 4555544 3677777787777 6677777888888888888777643
No 193
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=24.17 E-value=2.3e+02 Score=19.05 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=10.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 024874 176 QDQGLDMISEGLDTLKNMAHDMNE 199 (261)
Q Consensus 176 qD~~Ld~l~~~v~~lk~~a~~i~~ 199 (261)
.+..+..++..++.++.--..|++
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~ 28 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISE 28 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333333
No 194
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=24.09 E-value=4.2e+02 Score=22.02 Aligned_cols=61 Identities=11% Similarity=0.258 Sum_probs=50.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Q 024874 176 QDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQL 236 (261)
Q Consensus 176 qD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~ 236 (261)
..+..+.+..++..|...+..+..+++..-..|.++..++..-...+......+..++...
T Consensus 101 d~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~ 161 (184)
T PF05791_consen 101 DQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGE 161 (184)
T ss_dssp HHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence 4466778888888888888999999999999999988888888888888888888877653
No 195
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=23.89 E-value=2.5e+02 Score=19.39 Aligned_cols=20 Identities=5% Similarity=0.129 Sum_probs=8.8
Q ss_pred HHhhhhhHHHHHHHHHHHHH
Q 024874 173 KMKQDQGLDMISEGLDTLKN 192 (261)
Q Consensus 173 ~~eqD~~Ld~l~~~v~~lk~ 192 (261)
+.-||..++.|...|.++..
T Consensus 13 la~qe~~ie~Ln~~v~~Qq~ 32 (69)
T PF04102_consen 13 LAFQEDTIEELNDVVTEQQR 32 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 196
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=23.87 E-value=69 Score=22.93 Aligned_cols=10 Identities=20% Similarity=0.355 Sum_probs=3.8
Q ss_pred hHHHHHHHHH
Q 024874 242 FCIDIVLLCI 251 (261)
Q Consensus 242 ~ci~i~llv~ 251 (261)
|-++|+++|+
T Consensus 7 ~elliIl~i~ 16 (74)
T PRK01833 7 WQLLIIVAII 16 (74)
T ss_pred HHHHHHHHHH
Confidence 4343333333
No 197
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=23.71 E-value=2.4e+02 Score=21.55 Aligned_cols=12 Identities=25% Similarity=0.141 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHH
Q 024874 224 NTNVRLKHTVTQ 235 (261)
Q Consensus 224 ~~~~rl~~~~~~ 235 (261)
.+++||-.+|++
T Consensus 16 ~AMrRLl~~LRq 27 (103)
T PF11027_consen 16 MAMRRLLNLLRQ 27 (103)
T ss_pred HHHHHHHHHHHH
Confidence 467777777775
No 198
>PHA03240 envelope glycoprotein M; Provisional
Probab=23.70 E-value=60 Score=28.20 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=11.4
Q ss_pred chHHHHHHHHHHHHHHHHh
Q 024874 241 NFCIDIVLLCIILGIAAYL 259 (261)
Q Consensus 241 ~~ci~i~llv~il~i~~~i 259 (261)
--..||+++|+|++|+..+
T Consensus 211 aH~~WIiilIIiIiIIIL~ 229 (258)
T PHA03240 211 AHIAWIFIAIIIIIVIILF 229 (258)
T ss_pred chHhHHHHHHHHHHHHHHH
Confidence 3577777776665554433
No 199
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.54 E-value=2.8e+02 Score=19.75 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=10.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhH
Q 024874 198 NEEVDRQVPLMDEIDTKVDRATA 220 (261)
Q Consensus 198 ~~El~~Q~~lLd~l~~~vd~~~~ 220 (261)
++-|.+|...++.+..+++....
T Consensus 28 n~~laEq~~~i~k~q~qlr~L~~ 50 (72)
T COG2900 28 NDALAEQQLVIDKLQAQLRLLTE 50 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555444444443333
No 200
>PLN03160 uncharacterized protein; Provisional
Probab=23.46 E-value=57 Score=28.16 Aligned_cols=10 Identities=20% Similarity=0.032 Sum_probs=4.5
Q ss_pred HcCCCCchHH
Q 024874 235 QLRSSRNFCI 244 (261)
Q Consensus 235 ~~~~~~~~ci 244 (261)
+....|+.|+
T Consensus 34 ~~~~~c~~~~ 43 (219)
T PLN03160 34 RNCIKCCGCI 43 (219)
T ss_pred ccceEEHHHH
Confidence 3444554444
No 201
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=23.31 E-value=52 Score=22.23 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHhc
Q 024874 247 VLLCIILGIAAYLY 260 (261)
Q Consensus 247 ~llv~il~i~~~i~ 260 (261)
+|.+++++|++|+|
T Consensus 37 ~l~~~~~~Ivv~vy 50 (56)
T PF15012_consen 37 TLAAVFLFIVVFVY 50 (56)
T ss_pred HHHHHHHHHhheeE
Confidence 33334444444444
No 202
>PRK02624 psbH photosystem II reaction center protein H; Provisional
Probab=22.92 E-value=1.1e+02 Score=21.16 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 024874 244 IDIVLLCIILGIAAYLYK 261 (261)
Q Consensus 244 i~i~llv~il~i~~~i~~ 261 (261)
+.+.||.+++++++=|||
T Consensus 33 v~m~Lf~vFl~iiLeIYN 50 (64)
T PRK02624 33 VFMVLFLVFLLIILQIYN 50 (64)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 445555555666666665
No 203
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=22.92 E-value=3.1e+02 Score=20.10 Aligned_cols=57 Identities=11% Similarity=0.208 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 024874 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVT 234 (261)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~ 234 (261)
+.-+.+..-|..|..-=..+.+||+....-...++..-..+..+|..++..+..++.
T Consensus 32 ~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL~ 88 (89)
T PF13747_consen 32 RKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVLD 88 (89)
T ss_pred hhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334666666777776666777888888888888888888888888888887777653
No 204
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=22.88 E-value=4.9e+02 Score=22.38 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=9.4
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 024874 74 RRTKARLLEEVPKLQRLA 91 (261)
Q Consensus 74 r~~l~~L~~~l~~L~~~l 91 (261)
...+..+..+++.++..+
T Consensus 124 ~~~l~~l~~~l~~le~~~ 141 (292)
T PF01544_consen 124 FEVLEELEDELDELEDEL 141 (292)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 344455555555555553
No 205
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=22.84 E-value=3.8e+02 Score=20.99 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=19.1
Q ss_pred hhcHHHHHHHHHHHHhHHHHHHHHHh
Q 024874 68 ALNAEIRRTKARLLEEVPKLQRLAIK 93 (261)
Q Consensus 68 ~~~~eir~~l~~L~~~l~~L~~~l~~ 93 (261)
....+|...+.....++.+|+..+..
T Consensus 81 ~~~~~i~~~i~~~k~~ie~lk~~L~~ 106 (139)
T PF05615_consen 81 QLNEEIEQEIEQAKKEIEELKEELEE 106 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44467888888888888888877543
No 206
>PF06193 Orthopox_A5L: Orthopoxvirus A5L protein-like; InterPro: IPR010396 This family consists of several Orthopoxvirus A5L proteins. The vaccinia virus WR A5L open reading frame (corresponding to open reading frame A4L in vaccinia virus Copenhagen) encodes an immunodominant late protein found in the core of the vaccinia virion. The A5 protein appears to be required for the immature virion to form the brick-shaped intracellular mature virion [].
Probab=22.79 E-value=4.5e+02 Score=21.84 Aligned_cols=49 Identities=8% Similarity=0.170 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 024874 186 GLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVT 234 (261)
Q Consensus 186 ~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~ 234 (261)
.+..++.++..+.+--.+.+.++.+|...=+.|.+.+...++.|.+=+.
T Consensus 112 IikEl~dik~~t~~LQ~es~~Lv~DIs~AKe~T~~AIn~IM~~L~k~fq 160 (166)
T PF06193_consen 112 IIKELNDIKDETSSLQAESNSLVTDISDAKESTQDAINDIMKDLSKKFQ 160 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444446666666666778889999999999999999998888877554
No 207
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=22.78 E-value=2.6e+02 Score=22.15 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHc
Q 024874 72 EIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQA 119 (261)
Q Consensus 72 eir~~l~~L~~~l~~L~~~l~~k~~~lt~~El~~R~~~v~~l~~~l~~ 119 (261)
.++..++....++..+.+.+......+++.+...|...+.....++..
T Consensus 47 ~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~ 94 (158)
T PF03938_consen 47 ALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQ 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH
Confidence 334444455555555544433333356666666666666655555554
No 208
>PHA02909 hypothetical protein; Provisional
Probab=22.70 E-value=85 Score=21.24 Aligned_cols=8 Identities=38% Similarity=0.932 Sum_probs=4.3
Q ss_pred CchHHHHH
Q 024874 240 RNFCIDIV 247 (261)
Q Consensus 240 ~~~ci~i~ 247 (261)
+.||+.+-
T Consensus 30 ntfcimvs 37 (72)
T PHA02909 30 NTFCIMVS 37 (72)
T ss_pred cchhHHHH
Confidence 35777443
No 209
>PRK00736 hypothetical protein; Provisional
Probab=22.68 E-value=2.7e+02 Score=19.30 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=12.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHH
Q 024874 169 YEMRKMKQDQGLDMISEGLDTLKN 192 (261)
Q Consensus 169 q~~~~~eqD~~Ld~l~~~v~~lk~ 192 (261)
.+..+.-|+..++.|...|.++..
T Consensus 10 LE~klafqe~tie~Ln~~v~~Qq~ 33 (68)
T PRK00736 10 LEIRVAEQEKTIEELSDQLAEQWK 33 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666665555443
No 210
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=22.52 E-value=2.2e+02 Score=18.10 Aligned_cols=44 Identities=25% Similarity=0.285 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHH
Q 024874 180 LDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLK 223 (261)
Q Consensus 180 Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~ 223 (261)
+..|+.....+..+...-+.-|+.=..-+|.....+..+..+|.
T Consensus 15 i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ 58 (60)
T cd00193 15 IGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLK 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333344444444444444444444443
No 211
>PF13060 DUF3921: Protein of unknown function (DUF3921)
Probab=22.33 E-value=2.4e+02 Score=18.52 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHH
Q 024874 189 TLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTN 226 (261)
Q Consensus 189 ~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~ 226 (261)
.+|..--.+|.|++.|+...|++...-+.--+.|.-.+
T Consensus 12 aih~tydelgkei~~~g~~~d~i~kaqeeylsals~et 49 (58)
T PF13060_consen 12 AIHRTYDELGKEIDLQGVIADEIQKAQEEYLSALSHET 49 (58)
T ss_pred HHHHhHHHHhHHhhhcchHHHHHHHHHHHHHHHhhHHH
Confidence 34555667899999999999988776666555554433
No 212
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=21.56 E-value=2.4e+02 Score=21.40 Aligned_cols=24 Identities=17% Similarity=0.544 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Q 024874 193 MAHDMNEEVDRQVPLMDEIDTKVD 216 (261)
Q Consensus 193 ~a~~i~~El~~Q~~lLd~l~~~vd 216 (261)
+-..+..|+..|.+-||+++..++
T Consensus 77 Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 77 LKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344556678888888888888764
No 213
>PRK04406 hypothetical protein; Provisional
Probab=21.42 E-value=3.1e+02 Score=19.48 Aligned_cols=30 Identities=10% Similarity=0.200 Sum_probs=12.2
Q ss_pred HHHHhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 024874 201 VDRQVPLMDEIDTKVDRATADLKNTNVRLK 230 (261)
Q Consensus 201 l~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~ 230 (261)
+-.|...+++|+..|-.-+..|....++++
T Consensus 20 lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~ 49 (75)
T PRK04406 20 LAFQEQTIEELNDALSQQQLLITKMQDQMK 49 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433333333333
No 214
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=21.38 E-value=52 Score=30.25 Aligned_cols=8 Identities=25% Similarity=0.459 Sum_probs=2.9
Q ss_pred hHHHHHHH
Q 024874 242 FCIDIVLL 249 (261)
Q Consensus 242 ~ci~i~ll 249 (261)
|.++|+++
T Consensus 158 ~lf~ii~l 165 (318)
T PF06682_consen 158 WLFWIIFL 165 (318)
T ss_pred hhhhHHHH
Confidence 33333333
No 215
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=21.36 E-value=5.3e+02 Score=25.18 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHH
Q 024874 166 RQEYEMRKMKQDQGLDMISEGLD 188 (261)
Q Consensus 166 ~q~q~~~~~eqD~~Ld~l~~~v~ 188 (261)
+.++|....+.+++|+.+...+.
T Consensus 71 LteqQ~kasELEKqLaaLrqElq 93 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELD 93 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666677776644443
No 216
>PF14018 DUF4234: Domain of unknown function (DUF4234)
Probab=21.33 E-value=2.2e+02 Score=19.73 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhc
Q 024874 226 NVRLKHTVTQLRSSRNFCIDIVLLCIILGIAAYLY 260 (261)
Q Consensus 226 ~~rl~~~~~~~~~~~~~ci~i~llv~il~i~~~i~ 260 (261)
.+.++.+..+.......-+.++++++.++|+.+.|
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~lll~ilt~gi~~i~w 60 (75)
T PF14018_consen 26 WKELNQLTGRIISPRSMTLWLLLSILTCGIYSIYW 60 (75)
T ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 34455543332222223332444444455554444
No 217
>PF08135 EPV_E5: Major transforming protein E5 family; InterPro: IPR012555 This family consists of the major transforming proteins (E5) of the bovine papilloma virus (BPV). The equine sarcoid is one of the most common dermatological lesion in equids. It is a benign, locally invasive dermal fibroblastic lesion and studies have shown an association of the lesions with BPV. E5 is a short hydrophobic membrane protein localising to the Golgi apparatus and other intracellular membranes. It binds to and constitutively activates the platelet-derived growth factor-beta in transformed cells. This stimulation activates a receptor signalling cascade which results in an intracellular growth stimulatory signal [].
Probab=21.30 E-value=1.2e+02 Score=19.19 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhc
Q 024874 246 IVLLCIILGIAAYLY 260 (261)
Q Consensus 246 i~llv~il~i~~~i~ 260 (261)
.+++++++++++|-|
T Consensus 18 L~LL~FlL~fFLV~W 32 (44)
T PF08135_consen 18 LLLLVFLLFFFLVYW 32 (44)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555555544
No 218
>PRK00295 hypothetical protein; Provisional
Probab=21.28 E-value=2.9e+02 Score=19.14 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=11.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH
Q 024874 171 MRKMKQDQGLDMISEGLDTLKN 192 (261)
Q Consensus 171 ~~~~eqD~~Ld~l~~~v~~lk~ 192 (261)
..+.-|++.++.|+..|.++..
T Consensus 12 ~kla~qE~tie~Ln~~v~~Qq~ 33 (68)
T PRK00295 12 SRQAFQDDTIQALNDVLVEQQR 33 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554443
No 219
>KOG4358 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.11 E-value=2.1e+02 Score=27.84 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHH
Q 024874 32 GDDAFARLYGAVEADIEAALQK 53 (261)
Q Consensus 32 ~~DpF~~v~~d~~~~l~~l~~~ 53 (261)
++|||-.|++|+.+-|+.+..+
T Consensus 496 ~EDrfGVVQ~DLpaiI~~l~KL 517 (584)
T KOG4358|consen 496 TEDRFGVVQTDLPAIINTLLKL 517 (584)
T ss_pred cCCccceecccHHHHHHHHHHH
Confidence 6799999999999988888654
No 220
>PRK02119 hypothetical protein; Provisional
Probab=21.01 E-value=3.1e+02 Score=19.33 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=10.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH
Q 024874 171 MRKMKQDQGLDMISEGLDTLKN 192 (261)
Q Consensus 171 ~~~~eqD~~Ld~l~~~v~~lk~ 192 (261)
..+.-|++.++.|...|.++..
T Consensus 16 ~rla~QE~tie~LN~~v~~Qq~ 37 (73)
T PRK02119 16 MKIAFQENLLEELNQALIEQQF 37 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555544443
No 221
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=20.98 E-value=2.6e+02 Score=19.90 Aligned_cols=23 Identities=9% Similarity=0.154 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHH
Q 024874 206 PLMDEIDTKVDRATADLKNTNVR 228 (261)
Q Consensus 206 ~lLd~l~~~vd~~~~~l~~~~~r 228 (261)
+.|++|+...-..+=++....+.
T Consensus 9 r~L~eiEr~L~~~DP~fa~~l~~ 31 (82)
T PF11239_consen 9 RRLEEIERQLRADDPRFAARLRS 31 (82)
T ss_pred HHHHHHHHHHHhcCcHHHHHhcc
Confidence 48999998888777777665544
No 222
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=20.98 E-value=5.6e+02 Score=22.25 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCchHHHHHHHHHHHHHHHH
Q 024874 220 ADLKNTNVRLKHTVTQLR-SSRNFCIDIVLLCIILGIAAY 258 (261)
Q Consensus 220 ~~l~~~~~rl~~~~~~~~-~~~~~ci~i~llv~il~i~~~ 258 (261)
.++......|+.-+..++ ...+||+.++.-+..++++++
T Consensus 177 ~kId~Ev~~lk~qi~s~K~qt~qw~~g~v~~~~Al~La~~ 216 (220)
T KOG3156|consen 177 TKIDQEVTNLKTQIESVKTQTIQWLIGVVTGTSALVLAYL 216 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666777676665 345899988777777776554
No 223
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=20.94 E-value=2.2e+02 Score=23.51 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCchHH
Q 024874 221 DLKNTNVRLKHTVTQLRSSRNFCI 244 (261)
Q Consensus 221 ~l~~~~~rl~~~~~~~~~~~~~ci 244 (261)
.+..+.++++++.......+.|..
T Consensus 83 ~~~ea~~~L~~I~~~~~~y~~~~~ 106 (193)
T PF06738_consen 83 SLEEAIERLDEIDREPPRYPPWLV 106 (193)
T ss_pred CHHHHHHHHHHHhhCCCCCCHHHH
Confidence 355567777776554324445544
No 224
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=20.90 E-value=5.1e+02 Score=21.83 Aligned_cols=56 Identities=16% Similarity=0.198 Sum_probs=44.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHH
Q 024874 168 EYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLK 223 (261)
Q Consensus 168 ~q~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~ 223 (261)
..+......++.++.+.+.++...+.+-+.+.+|.-=..-|-.++.++|+.-.-|.
T Consensus 83 nlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE 138 (189)
T TIGR02132 83 NLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLE 138 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566788888888888888888888888888888888888888888877776
No 225
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=20.86 E-value=98 Score=17.85 Aligned_cols=14 Identities=36% Similarity=0.850 Sum_probs=8.0
Q ss_pred CCCCcHHHHHHHHH
Q 024874 30 VSGDDAFARLYGAV 43 (261)
Q Consensus 30 ~~~~DpF~~v~~d~ 43 (261)
+++.|||...+..+
T Consensus 3 is~~d~f~eFY~rl 16 (28)
T PF12108_consen 3 ISGGDPFSEFYERL 16 (28)
T ss_dssp --S--HHHHHHHHH
T ss_pred CCCCChHHHHHHHH
Confidence 46789999998555
No 226
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=20.55 E-value=3.8e+02 Score=20.20 Aligned_cols=47 Identities=9% Similarity=0.199 Sum_probs=25.3
Q ss_pred HHHHHHhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 024874 169 YEMRKMKQDQGLDMI--SEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKV 215 (261)
Q Consensus 169 q~~~~~eqD~~Ld~l--~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~v 215 (261)
...++...+..++.| ++.+..|+---..+..++..=+.-|+.++..+
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344555555556655 55555555555555555555555555544433
No 227
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=20.52 E-value=1.1e+02 Score=20.91 Aligned_cols=18 Identities=11% Similarity=0.397 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHHHHhc
Q 024874 242 FCIDIVLLCIILGIAAYLY 260 (261)
Q Consensus 242 ~ci~i~llv~il~i~~~i~ 260 (261)
|.+ +.++++.++++++.|
T Consensus 13 ~~t-~~~~l~fiavi~~ay 30 (60)
T COG4736 13 WGT-IAFTLFFIAVIYFAY 30 (60)
T ss_pred HHH-HHHHHHHHHHHHHHh
Confidence 444 344444444444444
No 228
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.40 E-value=85 Score=29.66 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=13.5
Q ss_pred CchHHHHHHHHHHHHHHHHhc
Q 024874 240 RNFCIDIVLLCIILGIAAYLY 260 (261)
Q Consensus 240 ~~~ci~i~llv~il~i~~~i~ 260 (261)
++|-.+++|++++..|++|+|
T Consensus 368 ~~~~~~~~lL~~l~~I~~~~y 388 (398)
T KOG0771|consen 368 RKIPAWLALLFVLSYIIAYFY 388 (398)
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 456666666666666666654
No 229
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=20.10 E-value=1.3e+02 Score=20.59 Aligned_cols=13 Identities=23% Similarity=0.253 Sum_probs=6.1
Q ss_pred HHHhHHHHHHHHH
Q 024874 216 DRATADLKNTNVR 228 (261)
Q Consensus 216 d~~~~~l~~~~~r 228 (261)
+.++.-|.+.-++
T Consensus 9 ETA~~FL~RvGr~ 21 (60)
T PF06072_consen 9 ETATEFLRRVGRQ 21 (60)
T ss_pred ccHHHHHHHHhHH
Confidence 4455555544333
No 230
>PHA02047 phage lambda Rz1-like protein
Probab=20.07 E-value=3.9e+02 Score=20.16 Aligned_cols=44 Identities=9% Similarity=0.088 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC
Q 024874 196 DMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSS 239 (261)
Q Consensus 196 ~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~ 239 (261)
.....++.-+.-+..+...|+....+=...++.++..+++++++
T Consensus 38 ~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~~W 81 (101)
T PHA02047 38 RQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQNRPW 81 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 33334444445555666666666666666777778888877654
No 231
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=20.06 E-value=9.7e+02 Score=24.69 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=8.1
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 024874 176 QDQGLDMISEGLDTLKNMAH 195 (261)
Q Consensus 176 qD~~Ld~l~~~v~~lk~~a~ 195 (261)
++..=+.|...+..|+.+..
T Consensus 556 ~~~ar~ei~~rv~~Lk~~~e 575 (717)
T PF10168_consen 556 QDLAREEIQRRVKLLKQQKE 575 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444333
No 232
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.06 E-value=7.9e+02 Score=25.87 Aligned_cols=68 Identities=13% Similarity=0.187 Sum_probs=51.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 024874 167 QEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVT 234 (261)
Q Consensus 167 q~q~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~ 234 (261)
+.....+.++|-++..+.+...++...-.....|+..++.....+.+.++-...+|+..+.+...+..
T Consensus 660 ~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q 727 (970)
T KOG0946|consen 660 QKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQ 727 (970)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHh
Confidence 44456778999999999999999988888888888888877777777777777777755554444433
Done!