Query 024874
Match_columns 261
No_of_seqs 209 out of 988
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 15:55:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024874.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024874hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nps_D Syntaxin-6; vesicle fus 99.7 7.5E-18 2.6E-22 123.0 9.4 77 164-240 5-81 (82)
2 1gl2_D Syntaxin 8, vesicle tra 99.6 5E-16 1.7E-20 108.4 7.8 64 171-234 2-65 (65)
3 1n7s_D SNAP-25A; neuronal snar 99.6 7.6E-15 2.6E-19 102.7 8.1 61 173-233 5-65 (66)
4 1sfc_D Protein (SNAP-25B), pro 99.6 1E-14 3.4E-19 107.5 8.5 64 172-235 23-86 (87)
5 1l4a_D S-SNAP25 fusion protein 99.5 1.8E-14 6.2E-19 106.0 6.7 63 173-235 25-87 (87)
6 3b5n_D Protein transport prote 99.5 1.5E-13 5.1E-18 95.2 8.2 58 174-231 6-63 (64)
7 3hd7_B Syntaxin-1A; membrane p 99.3 1.4E-11 4.8E-16 94.4 11.2 73 172-244 15-87 (109)
8 4dnd_A Syntaxin-10, SYN10; str 99.3 1.2E-11 4E-16 97.5 10.2 94 32-125 25-129 (130)
9 2c5k_T Syntaxin TLG1, T-snare 99.2 4E-11 1.4E-15 89.3 6.7 89 32-125 4-92 (95)
10 1jth_B Syntaxin 1A; coiled-coi 98.6 2.3E-07 7.8E-12 66.3 10.0 72 173-244 5-76 (77)
11 2nps_B Syntaxin 13, vesicle-as 98.5 7.4E-07 2.5E-11 62.6 9.6 68 176-243 4-71 (71)
12 3b5n_B Protein SSO1; snare com 98.2 2.4E-05 8.2E-10 54.5 10.5 64 173-236 5-68 (69)
13 1sfc_B Protein (syntaxin 1A), 98.2 2.1E-05 7E-10 56.9 10.3 67 173-239 16-82 (83)
14 1dn1_B Syntaxin 1A, syntaxin b 98.1 1.5E-06 5.3E-11 76.2 4.7 206 32-244 29-266 (267)
15 1gl2_B Syntaxin 7; membrane pr 98.0 3.8E-05 1.3E-09 52.9 8.2 58 175-232 6-63 (65)
16 1n7s_B Syntaxin 1A; neuronal s 98.0 9.2E-05 3.2E-09 51.3 10.0 60 173-232 7-66 (68)
17 2xhe_B Syntaxin1; exocytosis, 97.7 7.6E-05 2.6E-09 65.7 7.4 67 173-239 212-278 (279)
18 3hd7_A Vesicle-associated memb 96.8 0.018 6.1E-07 42.0 10.4 39 182-220 9-47 (91)
19 3hd7_B Syntaxin-1A; membrane p 96.7 0.055 1.9E-06 40.7 13.3 79 167-249 17-95 (109)
20 1n7s_C SNAP-25A; neuronal snar 95.1 0.5 1.7E-05 33.3 11.3 60 173-232 15-77 (79)
21 3c98_B Syntaxin-1A; protein co 94.7 0.0052 1.8E-07 52.6 -0.2 73 172-244 206-278 (279)
22 1nhl_A Synaptosomal-associated 92.9 0.55 1.9E-05 30.5 7.2 47 185-231 7-53 (54)
23 3b5n_C Protein transport prote 91.0 2.7 9.2E-05 28.8 9.4 55 178-232 9-66 (70)
24 2kog_A Vesicle-associated memb 90.6 0.021 7.2E-07 43.7 -2.0 19 200-218 55-73 (119)
25 1l4a_C S-SNAP25 fusion protein 88.3 1.2 4.2E-05 31.6 6.0 58 174-231 20-80 (83)
26 3hd7_A Vesicle-associated memb 88.2 5.6 0.00019 28.5 10.1 13 219-231 49-61 (91)
27 1gl2_C VTI1B, vesicle transpor 88.1 2.7 9.3E-05 28.2 7.4 55 178-232 9-63 (65)
28 2nps_C Vesicle transport throu 85.6 7.3 0.00025 27.2 10.5 64 173-236 14-77 (81)
29 1fjk_A Cardiac phospholamban; 73.6 6.3 0.00022 24.4 4.4 16 241-256 34-49 (52)
30 3ghg_A Fibrinogen alpha chain; 72.4 23 0.00078 33.4 9.9 17 4-20 60-76 (562)
31 1ez3_A Syntaxin-1A; three heli 71.5 28 0.00095 25.7 10.4 92 34-125 8-112 (127)
32 1g6u_A Domain swapped dimer; d 62.5 21 0.00071 21.5 4.9 39 78-122 3-41 (48)
33 1s94_A S-syntaxin; three helix 60.1 58 0.002 25.7 9.1 90 35-125 40-143 (180)
34 3efg_A Protein SLYX homolog; x 55.8 36 0.0012 23.5 6.1 47 178-224 14-60 (78)
35 1ssz_A Pulmonary surfactant-as 54.4 4.9 0.00017 22.6 1.1 20 4-23 5-24 (34)
36 1ic2_A Tropomyosin alpha chain 53.1 52 0.0018 22.6 10.7 55 178-232 20-74 (81)
37 2d9d_A BAG family molecular ch 50.3 40 0.0014 23.7 5.5 70 7-91 9-79 (89)
38 1fio_A SSO1 protein; four heli 45.2 65 0.0022 25.5 7.2 34 172-205 163-196 (196)
39 2dnx_A Syntaxin-12; snare, HAB 45.1 95 0.0033 23.3 8.4 57 34-90 10-66 (130)
40 1jcd_A Major outer membrane li 38.7 74 0.0025 20.2 7.6 18 213-230 32-49 (52)
41 1rh5_B Preprotein translocase 38.2 29 0.001 23.8 3.3 45 215-259 5-54 (74)
42 1gl2_B Syntaxin 7; membrane pr 36.7 87 0.003 20.4 7.9 56 171-226 9-64 (65)
43 3oja_A Leucine-rich immune mol 36.6 2.4E+02 0.0082 25.4 11.9 65 169-233 419-483 (487)
44 1yod_A Water-solublized phosph 36.5 30 0.001 19.1 2.5 15 241-255 13-27 (30)
45 2lk9_A Bone marrow stromal ant 36.0 27 0.00093 20.2 2.3 15 246-260 13-27 (35)
46 3j1r_A Archaeal adhesion filam 32.0 38 0.0013 18.3 2.3 9 252-260 16-24 (26)
47 1n7s_B Syntaxin 1A; neuronal s 31.1 1.1E+02 0.0038 20.0 9.0 60 167-226 8-67 (68)
48 2ww9_B Protein transport prote 30.7 92 0.0032 21.6 4.9 42 218-259 21-67 (80)
49 3a7p_A Autophagy protein 16; c 30.0 2E+02 0.0067 22.5 9.6 60 177-236 67-126 (152)
50 1l4a_D S-SNAP25 fusion protein 30.0 1.4E+02 0.0048 20.8 6.6 58 167-224 26-83 (87)
51 3u1c_A Tropomyosin alpha-1 cha 29.8 1.5E+02 0.0052 21.1 10.5 54 179-232 24-77 (101)
52 2kpa_A ARNO(375-400); hydrolas 29.2 20 0.00069 19.5 1.0 13 32-44 2-14 (26)
53 1jth_B Syntaxin 1A; coiled-coi 29.0 1.3E+02 0.0045 20.1 10.3 64 167-230 6-69 (77)
54 3nmd_A CGMP dependent protein 29.0 1.4E+02 0.0047 20.3 6.7 25 201-225 35-59 (72)
55 2k48_A Nucleoprotein; viral pr 28.9 69 0.0024 23.4 4.1 28 98-125 72-99 (107)
56 3oja_B Anopheles plasmodium-re 28.0 3.6E+02 0.012 24.8 16.7 66 171-236 516-581 (597)
57 2nps_B Syntaxin 13, vesicle-as 27.9 1.3E+02 0.0045 19.8 9.3 59 172-230 7-65 (71)
58 1s94_A S-syntaxin; three helix 27.3 2.2E+02 0.0075 22.1 8.0 25 171-195 43-67 (180)
59 3mp7_B Preprotein translocase 26.5 63 0.0021 21.2 3.3 36 224-259 10-50 (61)
60 2rdd_B UPF0092 membrane protei 26.2 44 0.0015 19.5 2.2 7 250-256 10-16 (37)
61 3ghg_A Fibrinogen alpha chain; 26.1 4.2E+02 0.014 25.0 14.7 24 67-90 56-79 (562)
62 1urq_A M-tomosyn isoform; tran 25.9 1.4E+02 0.0049 19.5 8.6 36 182-217 8-43 (63)
63 1ez3_A Syntaxin-1A; three heli 25.5 1.9E+02 0.0065 20.8 8.1 23 173-195 14-36 (127)
64 3arc_H Photosystem II reaction 25.4 54 0.0018 21.8 2.7 18 244-261 32-49 (65)
65 3mtu_E Head morphogenesis prot 25.3 1.7E+02 0.0058 20.1 7.0 45 158-203 25-69 (77)
66 3b5n_B Protein SSO1; snare com 25.3 1.5E+02 0.0051 19.5 10.3 60 168-227 7-66 (69)
67 3u59_A Tropomyosin beta chain; 24.2 1.9E+02 0.0066 20.5 10.7 51 181-231 26-76 (101)
68 2l5g_B Putative uncharacterize 24.2 1.3E+02 0.0043 18.3 4.6 28 207-234 10-37 (42)
69 3zrx_A AF1503 protein, osmolar 23.6 1.7E+02 0.0057 19.5 8.0 15 219-233 93-107 (115)
70 3efg_A Protein SLYX homolog; x 23.4 1.8E+02 0.0062 19.8 6.4 23 170-192 20-42 (78)
71 3p8c_F ABL interactor 2; actin 23.2 2.7E+02 0.0093 21.8 8.5 47 180-226 56-102 (159)
72 2kog_A Vesicle-associated memb 23.0 61 0.0021 24.2 3.1 8 223-230 81-88 (119)
73 4b6x_A AVRRPS4, avirulence pro 21.7 2.1E+02 0.0071 19.9 6.5 52 71-122 25-76 (90)
74 3lay_A Zinc resistance-associa 21.6 2.8E+02 0.0096 21.9 6.9 45 72-121 89-133 (175)
75 2l6w_A Beta-type platelet-deri 27.0 20 0.00067 21.5 0.0 16 246-261 18-33 (39)
76 3p8c_D Wiskott-aldrich syndrom 21.3 3.9E+02 0.013 22.9 8.3 33 203-235 47-79 (279)
77 4ev6_A Magnesium transport pro 20.8 4E+02 0.014 22.8 10.8 14 77-90 173-186 (339)
78 3din_D Preprotein translocase 20.8 1.6E+02 0.0055 19.2 4.5 37 221-257 7-44 (65)
79 1sfc_B Protein (syntaxin 1A), 20.4 2.1E+02 0.0072 19.4 10.3 62 166-227 16-77 (83)
80 2fyz_B Fusion protein, fusion 20.4 47 0.0016 20.8 1.6 33 195-227 10-42 (48)
81 3arc_I Photosystem II reaction 20.1 1.1E+02 0.0038 18.0 3.0 14 246-259 11-24 (38)
No 1
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=99.74 E-value=7.5e-18 Score=123.01 Aligned_cols=77 Identities=18% Similarity=0.301 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCC
Q 024874 164 QFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSR 240 (261)
Q Consensus 164 ~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~ 240 (261)
+.+|.|+..+++||+.||.|+.+|++||++|.+||+||+.||+|||+|+++||++..+|..+++|+++++++.++++
T Consensus 5 a~~q~Q~~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~~ 81 (82)
T 2nps_D 5 ASMTGGNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRR 81 (82)
T ss_dssp -------------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence 45688888999999999999999999999999999999999999999999999999999999999999999876543
No 2
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.64 E-value=5e-16 Score=108.39 Aligned_cols=64 Identities=23% Similarity=0.399 Sum_probs=53.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 024874 171 MRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVT 234 (261)
Q Consensus 171 ~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~ 234 (261)
+.|++||+.||.|+.+|++||++|.+||+||+.||.+||+++++||++..+|..+++|++++++
T Consensus 2 ~~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~k 65 (65)
T 1gl2_D 2 SHMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDR 65 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3578999999999999999999999999999999999999999999999999999999998763
No 3
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=99.57 E-value=7.6e-15 Score=102.65 Aligned_cols=61 Identities=28% Similarity=0.418 Sum_probs=58.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 024874 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTV 233 (261)
Q Consensus 173 ~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~ 233 (261)
..+||+.|+.|+.+|++||++|.+||+||+.||++||+|+.+||++..+|..+++|+++++
T Consensus 5 e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ll 65 (66)
T 1n7s_D 5 ENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHc
Confidence 3589999999999999999999999999999999999999999999999999999999875
No 4
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.56 E-value=1e-14 Score=107.51 Aligned_cols=64 Identities=28% Similarity=0.418 Sum_probs=60.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 024874 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (261)
Q Consensus 172 ~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~ 235 (261)
...+||+.|+.|+.+|++||++|.+||+||+.||++||+|+.+||++..+|..+++|+++++++
T Consensus 23 ~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~k 86 (87)
T 1sfc_D 23 RENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGS 86 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 4559999999999999999999999999999999999999999999999999999999998764
No 5
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.52 E-value=1.8e-14 Score=105.98 Aligned_cols=63 Identities=21% Similarity=0.352 Sum_probs=59.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 024874 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (261)
Q Consensus 173 ~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~ 235 (261)
..+||+.|+.|+.+|++||++|.+||.||+.||++||+|+.+||++..+|..+++|+++++++
T Consensus 25 e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~k 87 (87)
T 1l4a_D 25 EDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLKN 87 (87)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC--
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 448999999999999999999999999999999999999999999999999999999998753
No 6
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.5e-13 Score=95.17 Aligned_cols=58 Identities=28% Similarity=0.382 Sum_probs=56.4
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 024874 174 MKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231 (261)
Q Consensus 174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~ 231 (261)
.+||+.|+.|+..+++||++|.+||+||+.||++||.|+.++|++..+|..+++||++
T Consensus 6 ~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 6 LEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4899999999999999999999999999999999999999999999999999999986
No 7
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.32 E-value=1.4e-11 Score=94.37 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=65.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCchHH
Q 024874 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCI 244 (261)
Q Consensus 172 ~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci 244 (261)
.+++.++.+..|..++..|++++.+|+..+.+|+++||.++.+++.+...+..+++.+++..+..+++++|++
T Consensus 15 ~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~ 87 (109)
T 3hd7_B 15 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 87 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcce
Confidence 4557788999999999999999999999999999999999999999999999999999998877665554433
No 8
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=99.31 E-value=1.2e-11 Score=97.49 Aligned_cols=94 Identities=15% Similarity=0.138 Sum_probs=72.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh------hhhhcHHHHHHHHHHHHhHHHHHHHHH--hh---cCCCCH
Q 024874 32 GDDAFARLYGAVEADIEAALQKAESASNEKNRAS------VVALNAEIRRTKARLLEEVPKLQRLAI--KK---VKGLST 100 (261)
Q Consensus 32 ~~DpF~~v~~d~~~~l~~l~~~~~~~~~ernr~~------~~~~~~eir~~l~~L~~~l~~L~~~l~--~k---~~~lt~ 100 (261)
..|||+.|++||..+|..+..+...+...+..+. ......||++.|..++++|.||++++. .+ .|+|++
T Consensus 25 ~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~ 104 (130)
T 4dnd_A 25 LEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPA 104 (130)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCH
Confidence 3599999999999999999888655443332211 122235899999999999999999953 22 369999
Q ss_pred HHHHHHHHHHHHHHHHHHcchhccc
Q 024874 101 EELVARNDLVLALPDRIQAIPDGTA 125 (261)
Q Consensus 101 ~El~~R~~~v~~l~~~l~~l~~~~~ 125 (261)
.|+.+|++||..++.+|..|+..++
T Consensus 105 ~Ei~~Rr~fV~~~r~~I~~mk~~l~ 129 (130)
T 4dnd_A 105 GDLQERKVFVERMREAVQEMKDHMV 129 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999988764
No 9
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=99.17 E-value=4e-11 Score=89.34 Aligned_cols=89 Identities=16% Similarity=0.195 Sum_probs=70.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcHHHHHHHHHHHHhHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 024874 32 GDDAFARLYGAVEADIEAALQKAESASNEKNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVL 111 (261)
Q Consensus 32 ~~DpF~~v~~d~~~~l~~l~~~~~~~~~ernr~~~~~~~~eir~~l~~L~~~l~~L~~~l~~k~~~lt~~El~~R~~~v~ 111 (261)
+.|||++|++|+.++|..+.++... ++.++......|+.+.++.|.++|.||.+++.-.... ++.|+.+|+++|.
T Consensus 4 s~DPF~~V~~D~~~ql~~l~~~~~~----~~~~~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~-~~~EI~~Rk~~v~ 78 (95)
T 2c5k_T 4 SEDPFQQVVKDTKEQLNRINNYITR----HNTAGDDDQEEEIQDILKDVEETIVDLDRSIIVMKRD-ENEDVSGREAQVK 78 (95)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHH----TCCC--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS-TTCCCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHH----ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 4699999999999999999877432 2222222344799999999999999999994321122 9999999999999
Q ss_pred HHHHHHHcchhccc
Q 024874 112 ALPDRIQAIPDGTA 125 (261)
Q Consensus 112 ~l~~~l~~l~~~~~ 125 (261)
.++.+++.|+..++
T Consensus 79 ~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 79 NIKQQLDALKLRFD 92 (95)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998775
No 10
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=98.65 E-value=2.3e-07 Score=66.34 Aligned_cols=72 Identities=19% Similarity=0.221 Sum_probs=59.3
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCchHH
Q 024874 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCI 244 (261)
Q Consensus 173 ~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci 244 (261)
+++-.+.+..|..++..|+++..+|+.-+.+|+++||.|+.+|+.|...+..++..|.+..+..+++++|++
T Consensus 5 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~~ 76 (77)
T 1jth_B 5 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 445667889999999999999999999999999999999999999999999999999998887776665544
No 11
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=98.53 E-value=7.4e-07 Score=62.64 Aligned_cols=68 Identities=13% Similarity=0.280 Sum_probs=61.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCchH
Q 024874 176 QDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFC 243 (261)
Q Consensus 176 qD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~c 243 (261)
-.+.+..|..++..|++++.+|+.-+.+|+++||.|+..|+.|...+..++..|.+..+..+++++|+
T Consensus 4 R~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~~ 71 (71)
T 2nps_B 4 RETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKKM 71 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 35678899999999999999999999999999999999999999999999999999998887777764
No 12
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=98.18 E-value=2.4e-05 Score=54.53 Aligned_cols=64 Identities=23% Similarity=0.249 Sum_probs=58.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Q 024874 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQL 236 (261)
Q Consensus 173 ~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~ 236 (261)
+++-.+.+..|..++..|+++..+|+.-+.+|+.+||.|+.+|+.|...+..++..|++..+..
T Consensus 5 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q 68 (69)
T 3b5n_B 5 VQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSA 68 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456678999999999999999999999999999999999999999999999999999977653
No 13
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=98.16 E-value=2.1e-05 Score=56.88 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=60.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC
Q 024874 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSS 239 (261)
Q Consensus 173 ~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~ 239 (261)
+++-.+.+..|..++..|++++.+|+.-+.+|+.+||.|+.+|+.+...+..++..|.+..+..+++
T Consensus 16 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~ 82 (83)
T 1sfc_B 16 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKA 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcc
Confidence 4466678999999999999999999999999999999999999999999999999999988765543
No 14
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=98.14 E-value=1.5e-06 Score=76.24 Aligned_cols=206 Identities=15% Similarity=0.173 Sum_probs=109.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhcHHHHHHHHHHHHhH-----------HHHHHHHHhh-cCCC
Q 024874 32 GDDAFARLYGAVEADIEAALQKAESASNEKNRASV-VALNAEIRRTKARLLEEV-----------PKLQRLAIKK-VKGL 98 (261)
Q Consensus 32 ~~DpF~~v~~d~~~~l~~l~~~~~~~~~ernr~~~-~~~~~eir~~l~~L~~~l-----------~~L~~~l~~k-~~~l 98 (261)
..+.|+....++...|..+............+... .....+++..+..+..++ ..|....... ...-
T Consensus 29 ~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~~~ 108 (267)
T 1dn1_B 29 FMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNR 108 (267)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 34789999999998888887664432222222111 111124455554444443 3333331110 1133
Q ss_pred CHHHHHHHHHHHHHHHHHHHcchhcccCCC------------CCCCCCCCCCCCcccc--cCCCCCCCchhhh-----cC
Q 024874 99 STEELVARNDLVLALPDRIQAIPDGTAAAP------------KQSGGWGASASRTEIK--FDSDGRFDDEYFQ-----QT 159 (261)
Q Consensus 99 t~~El~~R~~~v~~l~~~l~~l~~~~~~~~------------~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~-----~t 159 (261)
++.+..-|+..+..|..++..+...+.... ++-...|.......+. .. .|. ...|. .+
T Consensus 109 ~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~~~~tdeeie~~ie-~g~--~~~f~q~~l~~~ 185 (267)
T 1dn1_B 109 SSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLE-SGN--PAIFASGIIMDS 185 (267)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH-TCS--SCTTTTTCCCCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCCCCHHHHHHHHh-CCc--HHHHHHHHHHhh
Confidence 456778889999999988887766554210 0000001000000000 00 010 01111 11
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC
Q 024874 160 EESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSS 239 (261)
Q Consensus 160 e~~~~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~ 239 (261)
...+ +.-..+++-.+.+..|..+|..|+++..+|+.-|.+|+++||.|+.+|+.|...+..++..|.+..+..+++
T Consensus 186 ~~~~----~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~ 261 (267)
T 1dn1_B 186 SISK----QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKA 261 (267)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-------------
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111 112345567788999999999999999999999999999999999999999999999999999988887777
Q ss_pred CchHH
Q 024874 240 RNFCI 244 (261)
Q Consensus 240 ~~~ci 244 (261)
++|.|
T Consensus 262 rkk~~ 266 (267)
T 1dn1_B 262 RRKKI 266 (267)
T ss_dssp -----
T ss_pred cCccc
Confidence 76544
No 15
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=97.97 E-value=3.8e-05 Score=52.86 Aligned_cols=58 Identities=14% Similarity=0.357 Sum_probs=54.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 024874 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (261)
Q Consensus 175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~ 232 (261)
+-.+.+..|..++..|+++..+|+.-+.+|+.+||.|+..|+.|...+..++..|++.
T Consensus 6 eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA 63 (65)
T 1gl2_B 6 ERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRA 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557789999999999999999999999999999999999999999999999999874
No 16
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=97.96 E-value=9.2e-05 Score=51.32 Aligned_cols=60 Identities=18% Similarity=0.242 Sum_probs=55.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 024874 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (261)
Q Consensus 173 ~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~ 232 (261)
+++-.+.+..|..++..|+++..+|+.-+.+|+.+||.|+..|+.|...+..++..|++.
T Consensus 7 i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 66 (68)
T 1n7s_B 7 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667899999999999999999999999999999999999999999999999999874
No 17
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=97.69 E-value=7.6e-05 Score=65.65 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=47.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC
Q 024874 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSS 239 (261)
Q Consensus 173 ~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~ 239 (261)
+++-.+.+..|..+|..|+++..+|+.-|.+|+.+||.|+.+|+.|...+..++..|.+..+..++.
T Consensus 212 i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~qk~~ 278 (279)
T 2xhe_B 212 IRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQESA 278 (279)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcc
Confidence 4466788999999999999999999999999999999999999999999999999999987765543
No 18
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=96.76 E-value=0.018 Score=42.00 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhH
Q 024874 182 MISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATA 220 (261)
Q Consensus 182 ~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~ 220 (261)
.+...|...+.+-..=-+.+=+-++-||.|.++.+.-..
T Consensus 9 ~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~ 47 (91)
T 3hd7_A 9 QTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA 47 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 333333333333333333444455556666655554443
No 19
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=96.74 E-value=0.055 Score=40.66 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=63.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCchHHHH
Q 024874 167 QEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDI 246 (261)
Q Consensus 167 q~q~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i 246 (261)
++....+.+....+-+|++....+..+-..=|+-++.=..-++.....++.+...|..+.+.=++ ++++.+||+++
T Consensus 17 ~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~----~rkk~~i~l~~ 92 (109)
T 3hd7_B 17 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSK----ARRKKIMIIIC 92 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCcceehHHH
Confidence 45556677888999999999999999999999999999999999999999999999998766544 34456787754
Q ss_pred HHH
Q 024874 247 VLL 249 (261)
Q Consensus 247 ~ll 249 (261)
+++
T Consensus 93 ~~i 95 (109)
T 3hd7_B 93 CVI 95 (109)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 20
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=95.14 E-value=0.5 Score=33.27 Aligned_cols=60 Identities=18% Similarity=0.245 Sum_probs=49.6
Q ss_pred HHhhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 024874 173 KMKQDQGLDMISEGL---DTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (261)
Q Consensus 173 ~~eqD~~Ld~l~~~v---~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~ 232 (261)
....++.++.+..++ ..-..+|..+-.+|..|.+.|+.++..++.++..|..+.+.|+.+
T Consensus 15 ~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m 77 (79)
T 1n7s_C 15 DQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhh
Confidence 335666666665554 466678999999999999999999999999999999999998875
No 21
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=94.66 E-value=0.0052 Score=52.64 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=51.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCchHH
Q 024874 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCI 244 (261)
Q Consensus 172 ~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci 244 (261)
...+-...|..|...+..+.++...|..-+++|+.+++.|+..|+.+...+..++..+.+..+..++.++|.|
T Consensus 206 ~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~Rkkk~ 278 (279)
T 3c98_B 206 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 278 (279)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc
Confidence 3446668899999999999999999999999999999999999999999999999999998888777777755
No 22
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=92.92 E-value=0.55 Score=30.51 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 024874 185 EGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231 (261)
Q Consensus 185 ~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~ 231 (261)
..+....++|..+-.+|..|.+.|+.++..+|..+..|..+.+.|..
T Consensus 7 ~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~ 53 (54)
T 1nhl_A 7 GLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTE 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhc
Confidence 34555677888888999999999999999999999999999887753
No 23
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=90.97 E-value=2.7 Score=28.78 Aligned_cols=55 Identities=7% Similarity=0.118 Sum_probs=42.3
Q ss_pred hhHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 024874 178 QGLDMISEGLD---TLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (261)
Q Consensus 178 ~~Ld~l~~~v~---~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~ 232 (261)
+.++.-...+. .-...|..--.+|..|++.|+.++..+|..+..++.+.++++.+
T Consensus 9 esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~L 66 (70)
T 3b5n_C 9 SSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444333 33446666667899999999999999999999999999999874
No 24
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=90.64 E-value=0.021 Score=43.75 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=11.8
Q ss_pred HHHHHhhHHHHHHHHHHHH
Q 024874 200 EVDRQVPLMDEIDTKVDRA 218 (261)
Q Consensus 200 El~~Q~~lLd~l~~~vd~~ 218 (261)
.+-+-++-||.|.++.+.-
T Consensus 55 kvLeRGEkLd~L~~KTe~L 73 (119)
T 2kog_A 55 KVLERDQKLSELDDRADAL 73 (119)
T ss_dssp HHHCCCCSSCCCCSCCSCC
T ss_pred HHHHcccHHHHHHHHHHHH
Confidence 4445566777777666653
No 25
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=88.32 E-value=1.2 Score=31.61 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=45.4
Q ss_pred HhhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 024874 174 MKQDQGLDMISEGLDT---LKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231 (261)
Q Consensus 174 ~eqD~~Ld~l~~~v~~---lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~ 231 (261)
.-+++.++.....+.- -...|..--.+|..|++.|+.++..+|..+..|..+.+.|..
T Consensus 20 ~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~ 80 (83)
T 1l4a_C 20 QVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEG 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466667766655544 445777788899999999999999999999999888777654
No 26
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=88.18 E-value=5.6 Score=28.47 Aligned_cols=13 Identities=15% Similarity=0.465 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHHH
Q 024874 219 TADLKNTNVRLKH 231 (261)
Q Consensus 219 ~~~l~~~~~rl~~ 231 (261)
.....+..+++++
T Consensus 49 s~~F~~~A~~l~r 61 (91)
T 3hd7_A 49 ASQFETSAAKLKR 61 (91)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 27
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=88.07 E-value=2.7 Score=28.19 Aligned_cols=55 Identities=11% Similarity=0.204 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 024874 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (261)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~ 232 (261)
+.|..-...+....++|..+-.+|..|.+-|......++.++..|..+.+-|+.+
T Consensus 9 ~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m 63 (65)
T 1gl2_C 9 QSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSM 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhh
Confidence 4455555667777889999999999999999999999999999999999887764
No 28
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=85.62 E-value=7.3 Score=27.23 Aligned_cols=64 Identities=9% Similarity=0.142 Sum_probs=56.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Q 024874 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQL 236 (261)
Q Consensus 173 ~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~ 236 (261)
++.--+.|..-...+..--++|..|-.+|..|-+-|......++.+++.|..+.+-|+.+....
T Consensus 14 L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~ 77 (81)
T 2nps_C 14 LERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRI 77 (81)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Confidence 3455567777777888889999999999999999999999999999999999999999987754
No 29
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=73.65 E-value=6.3 Score=24.43 Aligned_cols=16 Identities=38% Similarity=0.762 Sum_probs=9.7
Q ss_pred chHHHHHHHHHHHHHH
Q 024874 241 NFCIDIVLLCIILGIA 256 (261)
Q Consensus 241 ~~ci~i~llv~il~i~ 256 (261)
+||++++++++|.+++
T Consensus 34 nfclilicllli~iiv 49 (52)
T 1fjk_A 34 NFCLILIFLLLICIIV 49 (52)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4888666665554443
No 30
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=72.38 E-value=23 Score=33.36 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhhccC
Q 024874 4 IDILTRVDSICKKYDKY 20 (261)
Q Consensus 4 ~~~~~r~~~~~~~~~~~ 20 (261)
+|+-+||+.|..+|+.|
T Consensus 60 rDltkrINELKnqLEdl 76 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHTHH
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 68899999999999444
No 31
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=71.52 E-value=28 Score=25.68 Aligned_cols=92 Identities=10% Similarity=0.130 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhcHHHHHHHHHHHHh-----------HHHHHHHHHhh-cCCCCH
Q 024874 34 DAFARLYGAVEADIEAALQKAESASNEKNRASV-VALNAEIRRTKARLLEE-----------VPKLQRLAIKK-VKGLST 100 (261)
Q Consensus 34 DpF~~v~~d~~~~l~~l~~~~~~~~~ernr~~~-~~~~~eir~~l~~L~~~-----------l~~L~~~l~~k-~~~lt~ 100 (261)
+.|+.-..++...|..+..........-.+... ......++..++.+..+ |..|+...... ..+-+.
T Consensus 8 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s 87 (127)
T 1ez3_A 8 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSS 87 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Confidence 568888888888888887654432221111111 11123344444444433 44443331111 123355
Q ss_pred HHHHHHHHHHHHHHHHHHcchhccc
Q 024874 101 EELVARNDLVLALPDRIQAIPDGTA 125 (261)
Q Consensus 101 ~El~~R~~~v~~l~~~l~~l~~~~~ 125 (261)
.+..-|+..+..|...+.++...++
T Consensus 88 ~~~Rir~~q~~~L~~kf~e~m~~y~ 112 (127)
T 1ez3_A 88 ADLRIRKTQHSTLSRKFVEVMSEYN 112 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999988876654
No 32
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=62.48 E-value=21 Score=21.48 Aligned_cols=39 Identities=33% Similarity=0.446 Sum_probs=23.2
Q ss_pred HHHHHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHcchh
Q 024874 78 ARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAIPD 122 (261)
Q Consensus 78 ~~L~~~l~~L~~~l~~k~~~lt~~El~~R~~~v~~l~~~l~~l~~ 122 (261)
..|..+++.|++. +++++|+..=...+..+...+..++.
T Consensus 3 aalkselqalkke------gfspeelaaleselqalekklaalks 41 (48)
T 1g6u_A 3 AALKSELQALKKE------GFSPEELAALESELQALEKKLAALKS 41 (48)
T ss_dssp HHHHHHHHHHHHT------TCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555444 77888876666666666655555443
No 33
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=60.07 E-value=58 Score=25.66 Aligned_cols=90 Identities=8% Similarity=0.137 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhcHHHHHHHH-----------HHHHhHHHHHHHHHhhc--CCCCH
Q 024874 35 AFARLYGAVEADIEAALQKAESASNEKNRASV-VALNAEIRRTKA-----------RLLEEVPKLQRLAIKKV--KGLST 100 (261)
Q Consensus 35 pF~~v~~d~~~~l~~l~~~~~~~~~ernr~~~-~~~~~eir~~l~-----------~L~~~l~~L~~~l~~k~--~~lt~ 100 (261)
.|+....++...|..+............+... ......++..+. .+...|..|+.. .... .+-++
T Consensus 40 ~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~-~~~~~~~~~~s 118 (180)
T 1s94_A 40 EFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELN-IEQEEHSNKSS 118 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTC-----C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhccCCCc
Confidence 47777788888888776554332222111110 111123344443 334444444443 1111 12345
Q ss_pred HHHHHHHHHHHHHHHHHHcchhccc
Q 024874 101 EELVARNDLVLALPDRIQAIPDGTA 125 (261)
Q Consensus 101 ~El~~R~~~v~~l~~~l~~l~~~~~ 125 (261)
.+..-|+..+..|..++..+...++
T Consensus 119 ~~~Rir~~q~~~L~~kf~~~m~~yq 143 (180)
T 1s94_A 119 ADLRIRKTQYSTISRKFVEVMSDYN 143 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999998877765
No 34
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=55.84 E-value=36 Score=23.52 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHH
Q 024874 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKN 224 (261)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (261)
+.|+.|...+.-+-..-..+++.|-.|...||.+...+.....++..
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555444445555556666666666666666555555443
No 35
>1ssz_A Pulmonary surfactant-associated protein B; LUNG surfactant protein, saposin, surface active protein; NMR {Synthetic}
Probab=54.40 E-value=4.9 Score=22.63 Aligned_cols=20 Identities=10% Similarity=0.190 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhhccCchh
Q 024874 4 IDILTRVDSICKKYDKYDVE 23 (261)
Q Consensus 4 ~~~~~r~~~~~~~~~~~~~~ 23 (261)
|-+|+|+++++-|||+..|.
T Consensus 5 r~likriqa~ipk~grmlpq 24 (34)
T 1ssz_A 5 RALIKRIQAMIPKGGRMLPQ 24 (34)
T ss_dssp HHHHHHHHHHCSSSCCCCHH
T ss_pred HHHHHHHHHHccccchhhHH
Confidence 67899999999999887663
No 36
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=53.07 E-value=52 Score=22.58 Aligned_cols=55 Identities=9% Similarity=0.204 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 024874 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (261)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~ 232 (261)
+.++.....+.....-+.....|+..-+.-+..+++++|++..+|..++.+|...
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555667778889999999999999999999999999999999774
No 37
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.33 E-value=40 Score=23.68 Aligned_cols=70 Identities=16% Similarity=0.195 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhccCchh-hhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcHHHHHHHHHHHHhHH
Q 024874 7 LTRVDSICKKYDKYDVE-KQRETNVSGDDAFARLYGAVEADIEAALQKAESASNEKNRASVVALNAEIRRTKARLLEEVP 85 (261)
Q Consensus 7 ~~r~~~~~~~~~~~~~~-~~~~~~~~~~DpF~~v~~d~~~~l~~l~~~~~~~~~ernr~~~~~~~~eir~~l~~L~~~l~ 85 (261)
|.+++.|++|.....++ -..++ ..|+|.....+++..|-.+-+. ...-|++||......--+++
T Consensus 9 i~~Ie~v~~r~r~l~~ell~~~~---~s~~yl~~k~eLq~Li~~LDev------------~~~~NpcIReaRRrAV~EvQ 73 (89)
T 2d9d_A 9 ILKIEKVLKRMREIKNELLQAQN---PSELYLSSKTELQGLIGQLDEV------------SLEKNPCIREARRRAVIEVQ 73 (89)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCSC---TTTHHHHHHHHHHHHHHHHGGG------------CSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC---chHHHhhhHHHHHHHHHHHhhc------------ccCCChHHHHHHHHHHHHHH
Confidence 34455555555333333 23332 2599999887776444433211 12345788887776666666
Q ss_pred HHHHHH
Q 024874 86 KLQRLA 91 (261)
Q Consensus 86 ~L~~~l 91 (261)
.|-..+
T Consensus 74 ~lit~l 79 (89)
T 2d9d_A 74 TLITYI 79 (89)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 38
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=45.19 E-value=65 Score=25.48 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=28.6
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024874 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQV 205 (261)
Q Consensus 172 ~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~ 205 (261)
.+++-.+.+-.|..+|..|+++..+|+.-|.+|+
T Consensus 163 ~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 163 EVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567788999999999999999999987766653
No 39
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.06 E-value=95 Score=23.25 Aligned_cols=57 Identities=11% Similarity=0.158 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcHHHHHHHHHHHHhHHHHHHH
Q 024874 34 DAFARLYGAVEADIEAALQKAESASNEKNRASVVALNAEIRRTKARLLEEVPKLQRL 90 (261)
Q Consensus 34 DpF~~v~~d~~~~l~~l~~~~~~~~~ernr~~~~~~~~eir~~l~~L~~~l~~L~~~ 90 (261)
..|..+...+...|..+...........+.-.+..-+.++|+.+..+.....+|-+.
T Consensus 10 ~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ 66 (130)
T 2dnx_A 10 RDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKE 66 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 459999999998888886553321211111112334578998888887777766444
No 40
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=38.75 E-value=74 Score=20.20 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=9.7
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 024874 213 TKVDRATADLKNTNVRLK 230 (261)
Q Consensus 213 ~~vd~~~~~l~~~~~rl~ 230 (261)
.++..+.+.-.++|.||.
T Consensus 32 ~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 32 SDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 344455555556666554
No 41
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=38.22 E-value=29 Score=23.81 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=19.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHcCCCC-----chHHHHHHHHHHHHHHHHh
Q 024874 215 VDRATADLKNTNVRLKHTVTQLRSSR-----NFCIDIVLLCIILGIAAYL 259 (261)
Q Consensus 215 vd~~~~~l~~~~~rl~~~~~~~~~~~-----~~ci~i~llv~il~i~~~i 259 (261)
++...+.+..--+.-.++++..+++. +.+....+-++++|+++|+
T Consensus 5 ~~~~~e~~~~f~kd~~rvlk~~~KPdr~EF~~iak~~~iG~~imG~IGfi 54 (74)
T 1rh5_B 5 FNQKIEQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYI 54 (74)
T ss_dssp -------CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555667777666543 2233333444555555554
No 42
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=36.65 E-value=87 Score=20.40 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=43.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHH
Q 024874 171 MRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTN 226 (261)
Q Consensus 171 ~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~ 226 (261)
..+.+....+-+|++....|..+...=|+-|+.=..-++.....|..+...|.++.
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34456667777888888888888888888888888888888888888888887764
No 43
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=36.63 E-value=2.4e+02 Score=25.45 Aligned_cols=65 Identities=23% Similarity=0.220 Sum_probs=45.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 024874 169 YEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTV 233 (261)
Q Consensus 169 q~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~ 233 (261)
++.+.++.....+.+..-.....+....+-+|-+.+.+.+++++..+..+...++.+..+-..+.
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (487)
T 3oja_A 419 YEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLA 483 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHH
Confidence 33344444445555555666666666666777778888899999999999998888887765543
No 44
>1yod_A Water-solublized phospholamban; protein design, water-soluble, de novo protein; 1.80A {Synthetic}
Probab=36.45 E-value=30 Score=19.10 Aligned_cols=15 Identities=13% Similarity=0.000 Sum_probs=8.1
Q ss_pred chHHHHHHHHHHHHH
Q 024874 241 NFCIDIVLLCIILGI 255 (261)
Q Consensus 241 ~~ci~i~llv~il~i 255 (261)
+||++.+++.++-++
T Consensus 13 NfcLilICllLi~Ii 27 (30)
T 1yod_A 13 NRCLREICQELKEIR 27 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 478755555444333
No 45
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=35.99 E-value=27 Score=20.16 Aligned_cols=15 Identities=27% Similarity=0.837 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHhc
Q 024874 246 IVLLCIILGIAAYLY 260 (261)
Q Consensus 246 i~llv~il~i~~~i~ 260 (261)
++|+++.+++.+.+|
T Consensus 13 ~LLviV~LgV~LI~f 27 (35)
T 2lk9_A 13 VLLIIVILGVPLIIF 27 (35)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchheEE
Confidence 334444455544443
No 46
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=31.97 E-value=38 Score=18.27 Aligned_cols=9 Identities=11% Similarity=0.364 Sum_probs=4.6
Q ss_pred HHHHHHHhc
Q 024874 252 ILGIAAYLY 260 (261)
Q Consensus 252 il~i~~~i~ 260 (261)
+-.+++|+|
T Consensus 16 ~aaVllylW 24 (26)
T 3j1r_A 16 AAAVLLYTW 24 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344455665
No 47
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=31.09 E-value=1.1e+02 Score=19.99 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=49.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHH
Q 024874 167 QEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTN 226 (261)
Q Consensus 167 q~q~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~ 226 (261)
++-...+.+....+-+|++....|..+...=|+-|+.=..-++.....|+.+...|..+.
T Consensus 8 ~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 8 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455667788888888888888888888888888888888899999999998888764
No 48
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=30.65 E-value=92 Score=21.62 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=20.6
Q ss_pred HhHHHHHHHHHHHHHHHHcCCCC-----chHHHHHHHHHHHHHHHHh
Q 024874 218 ATADLKNTNVRLKHTVTQLRSSR-----NFCIDIVLLCIILGIAAYL 259 (261)
Q Consensus 218 ~~~~l~~~~~rl~~~~~~~~~~~-----~~ci~i~llv~il~i~~~i 259 (261)
..+.+..--+.-.++++..+++. +.+....+-++++|+++|+
T Consensus 21 ~~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfi 67 (80)
T 2ww9_B 21 LVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYA 67 (80)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455566777666543 2233333334455555554
No 49
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=30.05 E-value=2e+02 Score=22.45 Aligned_cols=60 Identities=8% Similarity=0.103 Sum_probs=50.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Q 024874 177 DQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQL 236 (261)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~ 236 (261)
...+..|...+..+..--.+...|+...++.++.+.+.+...+-.+.....++.++=+.+
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347778888888888888888899999999999999999999999888888888865543
No 50
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=30.03 E-value=1.4e+02 Score=20.75 Aligned_cols=58 Identities=14% Similarity=0.151 Sum_probs=24.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHH
Q 024874 167 QEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKN 224 (261)
Q Consensus 167 q~q~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (261)
++|...+.+.-..|..|......+..=-..=+.-|+.=+.-.|.++..+..++.++..
T Consensus 26 ~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~k 83 (87)
T 1l4a_D 26 DDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATK 83 (87)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333333322223333333334445555555555555543
No 51
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=29.79 E-value=1.5e+02 Score=21.12 Aligned_cols=54 Identities=6% Similarity=0.129 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 024874 179 GLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (261)
Q Consensus 179 ~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~ 232 (261)
..+.+...+.....-+.....|+..-++-+..+++.+|.+...|..++.++...
T Consensus 24 rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ 77 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666677777778888888888888888888888888777776653
No 52
>2kpa_A ARNO(375-400); hydrolase; NMR {Synthetic} PDB: 2kpb_A
Probab=29.20 E-value=20 Score=19.53 Aligned_cols=13 Identities=23% Similarity=0.325 Sum_probs=8.9
Q ss_pred CCcHHHHHHHHHH
Q 024874 32 GDDAFARLYGAVE 44 (261)
Q Consensus 32 ~~DpF~~v~~d~~ 44 (261)
+.|||+++...-+
T Consensus 2 s~dPFYdml~~RK 14 (26)
T 2kpa_A 2 SVDPFYEMLAARK 14 (26)
T ss_dssp CSHHHHHHHTCTH
T ss_pred CcchHHHHHHHHH
Confidence 4599999864433
No 53
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=29.00 E-value=1.3e+02 Score=20.14 Aligned_cols=64 Identities=14% Similarity=0.147 Sum_probs=52.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 024874 167 QEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLK 230 (261)
Q Consensus 167 q~q~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~ 230 (261)
++-...+.+....+-+|++....|..+...=|+-|+.=..-++.....|+.+...|..+.+.-+
T Consensus 6 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~ 69 (77)
T 1jth_B 6 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQS 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334556678888999999999999999999999998888999999999999999998876443
No 54
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=28.97 E-value=1.4e+02 Score=20.31 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=9.8
Q ss_pred HHHHhhHHHHHHHHHHHHhHHHHHH
Q 024874 201 VDRQVPLMDEIDTKVDRATADLKNT 225 (261)
Q Consensus 201 l~~Q~~lLd~l~~~vd~~~~~l~~~ 225 (261)
|..+..+|++++...+.-...+...
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~L 59 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQML 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444333333333
No 55
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=28.91 E-value=69 Score=23.41 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHcchhccc
Q 024874 98 LSTEELVARNDLVLALPDRIQAIPDGTA 125 (261)
Q Consensus 98 lt~~El~~R~~~v~~l~~~l~~l~~~~~ 125 (261)
+...-+.+|+..|..++..+.+++..+.
T Consensus 72 vNK~tl~~R~~~Vsalq~KiaeLKrqLA 99 (107)
T 2k48_A 72 VNKSTLQNRRAAVSTLETKLGELKRQLA 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445589999999999999999987764
No 56
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.01 E-value=3.6e+02 Score=24.82 Aligned_cols=66 Identities=11% Similarity=0.045 Sum_probs=49.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Q 024874 171 MRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQL 236 (261)
Q Consensus 171 ~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~ 236 (261)
+..+.....+....+.+...+.....+..|++.-...++.....+......+...+.+++.+..+.
T Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 516 ERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444556666777777777777777788888888888888888888888888888888877764
No 57
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=27.91 E-value=1.3e+02 Score=19.81 Aligned_cols=59 Identities=17% Similarity=0.230 Sum_probs=47.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 024874 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLK 230 (261)
Q Consensus 172 ~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~ 230 (261)
.+.+....+-+|++....|..+...=|+-|+.=..-++.....|+.+...|..+.+.-+
T Consensus 7 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk 65 (71)
T 2nps_B 7 AIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQK 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677778888888888888888888888888888999999999999988876443
No 58
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=27.27 E-value=2.2e+02 Score=22.12 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=13.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHH
Q 024874 171 MRKMKQDQGLDMISEGLDTLKNMAH 195 (261)
Q Consensus 171 ~~~~eqD~~Ld~l~~~v~~lk~~a~ 195 (261)
....+....|+.|...|..|+.+-.
T Consensus 43 ~~v~~I~~~i~~i~~~v~~l~~~~~ 67 (180)
T 1s94_A 43 EQVEEIRAMIDKISDNVDAVKKKHS 67 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666665555555433
No 59
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=26.50 E-value=63 Score=21.21 Aligned_cols=36 Identities=11% Similarity=0.120 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHcCCCC--ch---HHHHHHHHHHHHHHHHh
Q 024874 224 NTNVRLKHTVTQLRSSR--NF---CIDIVLLCIILGIAAYL 259 (261)
Q Consensus 224 ~~~~rl~~~~~~~~~~~--~~---ci~i~llv~il~i~~~i 259 (261)
.--+.-.++++..+++. -| +....+-++++|+++|+
T Consensus 10 ~f~kd~~rvlk~~~KPd~~Ef~~iak~~~iG~~i~G~iGf~ 50 (61)
T 3mp7_B 10 HFWKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLIGML 50 (61)
T ss_dssp THHHHHTHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556677666443 22 33333444555555554
No 60
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=26.16 E-value=44 Score=19.46 Aligned_cols=7 Identities=14% Similarity=-0.140 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 024874 250 CIILGIA 256 (261)
Q Consensus 250 v~il~i~ 256 (261)
+++++++
T Consensus 10 v~~~~if 16 (37)
T 2rdd_B 10 VVFGLIF 16 (37)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333443
No 61
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.14 E-value=4.2e+02 Score=24.96 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=15.2
Q ss_pred hhhcHHHHHHHHHHHHhHHHHHHH
Q 024874 67 VALNAEIRRTKARLLEEVPKLQRL 90 (261)
Q Consensus 67 ~~~~~eir~~l~~L~~~l~~L~~~ 90 (261)
..++..+...|+.|+..|.++.+.
T Consensus 56 dkqErDltkrINELKnqLEdlsKn 79 (562)
T 3ghg_A 56 DEVNQDFTNRINKLKNSLFEYQKN 79 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HhhcCcHHHHHHHHHHHHHHHHhh
Confidence 344456667777777777777544
No 62
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=25.89 E-value=1.4e+02 Score=19.49 Aligned_cols=36 Identities=3% Similarity=0.064 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 024874 182 MISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDR 217 (261)
Q Consensus 182 ~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~ 217 (261)
.+...|+..+.+...--+.|-+-++-|+.|+++.+.
T Consensus 8 ~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~ 43 (63)
T 1urq_A 8 GVKGAASGVVGELARARLALDERGQKLSDLEERTAA 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444555555555555555554
No 63
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=25.54 E-value=1.9e+02 Score=20.85 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=11.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHH
Q 024874 173 KMKQDQGLDMISEGLDTLKNMAH 195 (261)
Q Consensus 173 ~~eqD~~Ld~l~~~v~~lk~~a~ 195 (261)
.++....|+.|...|.+|+.+=.
T Consensus 14 v~~I~~~i~~i~~~v~~l~~~~~ 36 (127)
T 1ez3_A 14 VEEIRGFIDKIAENVEEVKRKHS 36 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555544433
No 64
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=25.44 E-value=54 Score=21.79 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 024874 244 IDIVLLCIILGIAAYLYK 261 (261)
Q Consensus 244 i~i~llv~il~i~~~i~~ 261 (261)
+.+.||.+++++++=|||
T Consensus 32 v~m~Lf~vFl~iiLeIYN 49 (65)
T 3arc_H 32 VFMGLFLVFLLIILEIYN 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 344555555556666665
No 65
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=25.27 E-value=1.7e+02 Score=20.12 Aligned_cols=45 Identities=16% Similarity=0.165 Sum_probs=35.3
Q ss_pred cChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024874 158 QTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDR 203 (261)
Q Consensus 158 ~te~~~~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~ 203 (261)
+++.+ +++|+.+...--....+|.|...+...|.--..|..+++.
T Consensus 25 ~~~~~-~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDq 69 (77)
T 3mtu_E 25 QSERT-EALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQ 69 (77)
T ss_dssp CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33433 4557777777788899999999999999999999998763
No 66
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=25.25 E-value=1.5e+02 Score=19.46 Aligned_cols=60 Identities=8% Similarity=0.188 Sum_probs=49.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHH
Q 024874 168 EYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNV 227 (261)
Q Consensus 168 ~q~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~ 227 (261)
+-...+.+....+-+|++....|..+-..=|+-|+.=..-++.....|+.+...|..+.+
T Consensus 7 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 7 ARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456677788888888888888888888888888888899999999999999988865
No 67
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=24.20 E-value=1.9e+02 Score=20.45 Aligned_cols=51 Identities=10% Similarity=0.227 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 024874 181 DMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231 (261)
Q Consensus 181 d~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~ 231 (261)
+.+...+.....-+.....|+..-++-+..+++.+|.+..++..++.++..
T Consensus 26 e~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~ 76 (101)
T 3u59_A 26 EQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQ 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555566666666666666666666766666666666665544
No 68
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.19 E-value=1.3e+02 Score=18.26 Aligned_cols=28 Identities=11% Similarity=0.232 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 024874 207 LMDEIDTKVDRATADLKNTNVRLKHTVT 234 (261)
Q Consensus 207 lLd~l~~~vd~~~~~l~~~~~rl~~~~~ 234 (261)
-+|.++..++.+..++....++++.+-+
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777776544
No 69
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=23.63 E-value=1.7e+02 Score=19.50 Aligned_cols=15 Identities=0% Similarity=0.051 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHHHH
Q 024874 219 TADLKNTNVRLKHTV 233 (261)
Q Consensus 219 ~~~l~~~~~rl~~~~ 233 (261)
...+.....++..++
T Consensus 93 ~~~~~~~~~~~~~~~ 107 (115)
T 3zrx_A 93 AESINKDIEECNAII 107 (115)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 70
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=23.42 E-value=1.8e+02 Score=19.83 Aligned_cols=23 Identities=35% Similarity=0.332 Sum_probs=11.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHH
Q 024874 170 EMRKMKQDQGLDMISEGLDTLKN 192 (261)
Q Consensus 170 ~~~~~eqD~~Ld~l~~~v~~lk~ 192 (261)
+..+.-|++.++.|+..|.++..
T Consensus 20 E~klAfqE~tIeeLn~~v~~Qq~ 42 (78)
T 3efg_A 20 ETRLSFQEQALTELSEALADARL 42 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555443
No 71
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=23.22 E-value=2.7e+02 Score=21.80 Aligned_cols=47 Identities=6% Similarity=0.190 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHH
Q 024874 180 LDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTN 226 (261)
Q Consensus 180 Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~ 226 (261)
-..|...+-.+..+|..+-+-|+.|..-+..++..|......+.--.
T Consensus 56 ~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~v~ih~ 102 (159)
T 3p8c_F 56 TQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVDIHK 102 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888899999999999999999999999998777665433
No 72
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=22.97 E-value=61 Score=24.15 Aligned_cols=8 Identities=25% Similarity=0.538 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 024874 223 KNTNVRLK 230 (261)
Q Consensus 223 ~~~~~rl~ 230 (261)
.+..++++
T Consensus 81 ~k~A~kl~ 88 (119)
T 2kog_A 81 ETSAAKLK 88 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 73
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=21.70 E-value=2.1e+02 Score=19.86 Aligned_cols=52 Identities=10% Similarity=0.074 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHcchh
Q 024874 71 AEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAIPD 122 (261)
Q Consensus 71 ~eir~~l~~L~~~l~~L~~~l~~k~~~lt~~El~~R~~~v~~l~~~l~~l~~ 122 (261)
+++|..|.+-...++.|.+.+......-.|.|+..-.+++...+..+..+..
T Consensus 25 ~~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r 76 (90)
T 4b6x_A 25 AALRQEIEDKQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQR 76 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4666665544444444444433322234567777767777776666665543
No 74
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.64 E-value=2.8e+02 Score=21.95 Aligned_cols=45 Identities=13% Similarity=0.067 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHcch
Q 024874 72 EIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAIP 121 (261)
Q Consensus 72 eir~~l~~L~~~l~~L~~~l~~k~~~lt~~El~~R~~~v~~l~~~l~~l~ 121 (261)
++|..+.....+|..|... .+.++..+..=.+.+.+++.++...+
T Consensus 89 ~Lr~ql~akr~EL~aL~~a-----~~~DeakI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 89 ALRQQLISKRYEYNALLTA-----SSPDTAKINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-----CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666665433 45677777777777777776665543
No 75
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=27.03 E-value=20 Score=21.49 Aligned_cols=16 Identities=38% Similarity=0.443 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhcC
Q 024874 246 IVLLCIILGIAAYLYK 261 (261)
Q Consensus 246 i~llv~il~i~~~i~~ 261 (261)
++++++.++++.++|.
T Consensus 18 ~vi~iisLIiLi~~w~ 33 (39)
T 2l6w_A 18 VVLTIISLIILIMLWQ 33 (39)
Confidence 3344445556667773
No 76
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=21.32 E-value=3.9e+02 Score=22.88 Aligned_cols=33 Identities=6% Similarity=0.072 Sum_probs=19.2
Q ss_pred HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 024874 203 RQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (261)
Q Consensus 203 ~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~ 235 (261)
.=+.+..+|...+..+..++.....|+.++-.+
T Consensus 47 ~A~dIF~eL~~e~~~~~~R~~~L~~RI~~L~~~ 79 (279)
T 3p8c_D 47 YAEDIFGELFNEAHSFSFRVNSLQERVDRLSVS 79 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555666666666666666666665443
No 77
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=20.83 E-value=4e+02 Score=22.84 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=7.1
Q ss_pred HHHHHHhHHHHHHH
Q 024874 77 KARLLEEVPKLQRL 90 (261)
Q Consensus 77 l~~L~~~l~~L~~~ 90 (261)
+..+.+++++|++.
T Consensus 173 l~~l~~~i~~lE~~ 186 (339)
T 4ev6_A 173 LMNLEDELEELEDK 186 (339)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 44455555555544
No 78
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=20.81 E-value=1.6e+02 Score=19.20 Aligned_cols=37 Identities=5% Similarity=-0.049 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHH
Q 024874 221 DLKNTNVRLKHTVTQLRSS-RNFCIDIVLLCIILGIAA 257 (261)
Q Consensus 221 ~l~~~~~rl~~~~~~~~~~-~~~ci~i~llv~il~i~~ 257 (261)
-++.....++++.--.++- .+..+.++++++++.+++
T Consensus 7 f~~~v~~ElkKV~WPtr~e~~~~T~vViv~~~i~~~~i 44 (65)
T 3din_D 7 FFREVIAEAKKISWPSRKELLTSFGVVLVILAVTSVYF 44 (65)
T ss_dssp ---CHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCcCHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444555666666555532 234443444444444433
No 79
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=20.42 E-value=2.1e+02 Score=19.45 Aligned_cols=62 Identities=15% Similarity=0.157 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHH
Q 024874 166 RQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNV 227 (261)
Q Consensus 166 ~q~q~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~ 227 (261)
.++-...+.+....+-+|++....|..+...=|+-|+.=..-++.....|+.+...|..+.+
T Consensus 16 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~ 77 (83)
T 1sfc_B 16 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567788899999999999999999999999999999999999999999999988865
No 80
>2fyz_B Fusion protein, fusion glycoprotein F0; mumps virus fusion protein core, protein binding; 2.20A {Mumps virus} SCOP: h.3.2.1
Probab=20.36 E-value=47 Score=20.79 Aligned_cols=33 Identities=12% Similarity=0.211 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHH
Q 024874 195 HDMNEEVDRQVPLMDEIDTKVDRATADLKNTNV 227 (261)
Q Consensus 195 ~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~ 227 (261)
.+|..||..=|.-|++..+.+++++..|..++-
T Consensus 10 LDISseL~~iNnsL~~A~~~I~eSn~~L~~V~~ 42 (48)
T 2fyz_B 10 IDISTELSKVNASLQNTVKYIKESNHQLQSVIV 42 (48)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456666666666666666666655555554443
No 81
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=20.13 E-value=1.1e+02 Score=18.01 Aligned_cols=14 Identities=21% Similarity=0.512 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHh
Q 024874 246 IVLLCIILGIAAYL 259 (261)
Q Consensus 246 i~llv~il~i~~~i 259 (261)
++++.+-+++++++
T Consensus 11 vV~ffvsLFiFGfL 24 (38)
T 3arc_I 11 VVTFFVLLFVFGFL 24 (38)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccc
Confidence 34444445555554
Done!