Query 024876
Match_columns 261
No_of_seqs 267 out of 2155
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 08:05:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024876.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024876hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543 FKBP-type peptidyl-pro 100.0 2.2E-42 4.7E-47 302.2 23.2 204 47-261 79-285 (397)
2 KOG0544 FKBP-type peptidyl-pro 100.0 1E-30 2.2E-35 182.4 11.1 106 53-162 2-108 (108)
3 KOG0545 Aryl-hydrocarbon recep 100.0 2.1E-31 4.5E-36 218.8 6.8 211 50-261 8-258 (329)
4 COG0545 FkpA FKBP-type peptidy 100.0 4.4E-29 9.6E-34 200.3 12.4 112 45-162 94-205 (205)
5 KOG0549 FKBP-type peptidyl-pro 99.9 4.8E-25 1E-29 173.4 12.6 112 51-166 67-180 (188)
6 PRK11570 peptidyl-prolyl cis-t 99.9 8.9E-25 1.9E-29 180.5 14.0 112 45-162 95-206 (206)
7 KOG0552 FKBP-type peptidyl-pro 99.9 1.5E-23 3.2E-28 172.4 13.8 110 48-162 116-226 (226)
8 TIGR03516 ppisom_GldI peptidyl 99.9 4.3E-23 9.4E-28 166.6 14.3 113 45-162 62-176 (177)
9 PRK10902 FKBP-type peptidyl-pr 99.9 1.7E-22 3.7E-27 172.8 14.8 114 46-166 140-253 (269)
10 PF00254 FKBP_C: FKBP-type pep 99.8 2.3E-20 4.9E-25 136.2 11.7 91 66-159 4-94 (94)
11 PRK15095 FKBP-type peptidyl-pr 99.6 6.2E-16 1.3E-20 122.7 9.0 71 66-138 4-74 (156)
12 COG1047 SlpA FKBP-type peptidy 99.5 7.4E-14 1.6E-18 110.7 9.5 71 66-138 2-72 (174)
13 PRK10737 FKBP-type peptidyl-pr 99.5 8.7E-14 1.9E-18 113.5 8.9 70 66-138 2-71 (196)
14 KOG4234 TPR repeat-containing 99.4 2.3E-13 5.1E-18 109.7 5.9 73 177-261 90-162 (271)
15 KOG0543 FKBP-type peptidyl-pro 99.3 4.3E-12 9.3E-17 112.1 6.5 81 60-159 1-82 (397)
16 KOG0547 Translocase of outer m 99.2 1.4E-11 3E-16 110.8 6.0 75 170-261 103-177 (606)
17 KOG0551 Hsp90 co-chaperone CNS 99.1 4.9E-11 1.1E-15 102.8 5.7 69 180-261 79-147 (390)
18 KOG0553 TPR repeat-containing 99.1 1.7E-10 3.7E-15 98.4 6.6 72 173-261 72-143 (304)
19 KOG4648 Uncharacterized conser 99.0 2.5E-10 5.4E-15 99.1 4.7 70 174-260 89-158 (536)
20 TIGR00115 tig trigger factor. 99.0 1.5E-08 3.2E-13 92.9 16.2 88 66-165 146-233 (408)
21 TIGR00990 3a0801s09 mitochondr 99.0 9.5E-10 2.1E-14 105.8 7.2 96 144-261 93-188 (615)
22 PRK01490 tig trigger factor; P 98.9 5.9E-08 1.3E-12 89.7 14.7 88 66-165 157-244 (435)
23 KOG0548 Molecular co-chaperone 98.9 2.9E-09 6.3E-14 96.9 5.5 64 181-261 357-420 (539)
24 COG0544 Tig FKBP-type peptidyl 98.8 2.1E-07 4.5E-12 85.5 16.0 87 67-165 158-244 (441)
25 KOG4642 Chaperone-dependent E3 98.7 7.6E-09 1.7E-13 85.8 2.7 65 180-261 8-72 (284)
26 PF13414 TPR_11: TPR repeat; P 98.7 3.4E-08 7.4E-13 67.0 4.6 63 182-261 3-66 (69)
27 KOG0550 Molecular chaperone (D 98.6 3.1E-08 6.7E-13 87.9 3.7 71 178-261 245-315 (486)
28 PF13424 TPR_12: Tetratricopep 98.2 1.9E-06 4.2E-11 59.8 4.9 71 181-261 4-74 (78)
29 KOG0546 HSP90 co-chaperone CPR 98.2 3.1E-07 6.8E-12 80.2 0.6 87 174-261 214-303 (372)
30 KOG0548 Molecular co-chaperone 97.9 8.4E-06 1.8E-10 74.7 4.3 62 182-260 2-63 (539)
31 PLN03088 SGT1, suppressor of 97.9 1.5E-05 3.2E-10 71.9 5.6 61 183-260 3-63 (356)
32 PF14559 TPR_19: Tetratricopep 97.9 4.3E-05 9.4E-10 51.3 5.6 52 192-260 1-52 (68)
33 PF13432 TPR_16: Tetratricopep 97.8 4.6E-05 1E-09 50.8 5.0 57 187-260 2-58 (65)
34 KOG0376 Serine-threonine phosp 97.6 3.8E-05 8.3E-10 69.9 3.0 64 181-261 3-66 (476)
35 KOG0550 Molecular chaperone (D 97.6 5.7E-05 1.2E-09 67.6 3.8 70 174-260 41-110 (486)
36 PF13371 TPR_9: Tetratricopept 97.6 0.00022 4.7E-09 48.5 5.6 56 189-261 2-57 (73)
37 PLN03098 LPA1 LOW PSII ACCUMUL 97.6 0.00012 2.6E-09 66.8 5.4 68 180-261 73-140 (453)
38 PRK15359 type III secretion sy 97.5 0.0003 6.5E-09 55.0 6.1 59 186-261 62-120 (144)
39 PF00515 TPR_1: Tetratricopept 97.2 0.00044 9.4E-09 39.7 2.8 28 234-261 2-29 (34)
40 PF12895 Apc3: Anaphase-promot 97.0 0.0018 4E-08 45.4 5.6 55 187-259 30-84 (84)
41 CHL00033 ycf3 photosystem I as 97.0 0.0018 4E-08 51.7 5.7 69 179-261 32-100 (168)
42 KOG1308 Hsp70-interacting prot 96.9 0.00015 3.1E-09 63.6 -0.9 71 174-261 106-176 (377)
43 KOG0549 FKBP-type peptidyl-pro 96.9 0.00076 1.7E-08 54.0 3.2 58 100-164 1-58 (188)
44 PRK15359 type III secretion sy 96.9 0.0024 5.3E-08 49.8 6.0 60 185-261 27-86 (144)
45 PRK02603 photosystem I assembl 96.9 0.002 4.4E-08 51.7 5.6 70 178-261 31-100 (172)
46 KOG1840 Kinesin light chain [C 96.9 0.0015 3.2E-08 61.3 5.1 73 180-261 239-311 (508)
47 KOG4555 TPR repeat-containing 96.8 0.0038 8.3E-08 47.8 5.6 69 176-261 37-105 (175)
48 TIGR02552 LcrH_SycD type III s 96.7 0.0037 8.1E-08 47.5 5.6 27 234-260 86-112 (135)
49 cd00189 TPR Tetratricopeptide 96.7 0.0051 1.1E-07 41.9 5.7 27 234-260 69-95 (100)
50 KOG2003 TPR repeat-containing 96.7 0.00052 1.1E-08 62.4 0.5 63 185-259 240-302 (840)
51 PRK15363 pathogenicity island 96.6 0.0044 9.6E-08 49.0 5.4 60 183-259 36-95 (157)
52 PLN03088 SGT1, suppressor of 96.6 0.0045 9.7E-08 55.8 6.1 61 184-261 38-98 (356)
53 PF12895 Apc3: Anaphase-promot 96.6 0.0048 1E-07 43.2 4.9 49 195-258 2-50 (84)
54 PRK15363 pathogenicity island 96.6 0.0048 1.1E-07 48.7 5.3 55 189-260 76-130 (157)
55 TIGR02795 tol_pal_ybgF tol-pal 96.6 0.0056 1.2E-07 45.0 5.5 75 186-260 6-103 (119)
56 TIGR02552 LcrH_SycD type III s 96.5 0.008 1.7E-07 45.7 6.2 61 183-260 18-78 (135)
57 PF14938 SNAP: Soluble NSF att 96.3 0.0086 1.9E-07 52.1 6.0 70 180-260 112-182 (282)
58 KOG1310 WD40 repeat protein [G 96.3 0.0051 1.1E-07 57.0 4.6 70 175-261 367-439 (758)
59 TIGR02795 tol_pal_ybgF tol-pal 96.3 0.0089 1.9E-07 43.9 5.3 29 185-213 42-70 (119)
60 KOG4814 Uncharacterized conser 96.3 0.01 2.2E-07 56.2 6.3 69 180-259 352-420 (872)
61 PF13176 TPR_7: Tetratricopept 96.1 0.0079 1.7E-07 35.1 3.2 26 235-260 1-26 (36)
62 PRK11189 lipoprotein NlpI; Pro 96.1 0.014 3.1E-07 51.1 6.0 28 233-260 132-159 (296)
63 KOG4626 O-linked N-acetylgluco 96.0 0.011 2.3E-07 56.1 5.0 30 232-261 387-416 (966)
64 cd00189 TPR Tetratricopeptide 96.0 0.028 6E-07 38.0 6.2 59 185-260 3-61 (100)
65 TIGR03302 OM_YfiO outer membra 96.0 0.013 2.9E-07 49.1 5.3 67 180-260 31-97 (235)
66 PF07719 TPR_2: Tetratricopept 95.9 0.012 2.5E-07 33.4 3.4 28 234-261 2-29 (34)
67 KOG4340 Uncharacterized conser 95.9 0.012 2.6E-07 51.2 4.6 64 181-261 143-206 (459)
68 PRK10866 outer membrane biogen 95.9 0.021 4.6E-07 48.7 6.1 62 185-260 35-96 (243)
69 PF09976 TPR_21: Tetratricopep 95.7 0.037 8.1E-07 43.0 6.4 59 186-258 52-110 (145)
70 PF13525 YfiO: Outer membrane 95.6 0.032 6.9E-07 46.1 6.0 64 183-260 6-69 (203)
71 PF12968 DUF3856: Domain of Un 95.6 0.087 1.9E-06 39.7 7.5 69 187-260 14-82 (144)
72 PF13374 TPR_10: Tetratricopep 95.6 0.018 3.8E-07 34.1 3.3 28 233-260 2-29 (42)
73 KOG4151 Myosin assembly protei 95.5 0.0081 1.8E-07 58.0 2.3 75 173-260 44-120 (748)
74 TIGR00990 3a0801s09 mitochondr 95.5 0.026 5.7E-07 54.5 5.9 25 187-211 370-394 (615)
75 PF15015 NYD-SP12_N: Spermatog 95.5 0.032 7E-07 50.6 5.8 81 176-259 173-254 (569)
76 PRK11189 lipoprotein NlpI; Pro 95.5 0.035 7.6E-07 48.7 6.0 61 184-261 66-126 (296)
77 PF13431 TPR_17: Tetratricopep 95.4 0.018 3.9E-07 33.2 2.8 33 204-253 1-33 (34)
78 TIGR02521 type_IV_pilW type IV 95.2 0.055 1.2E-06 43.9 6.1 75 186-260 69-162 (234)
79 PRK10803 tol-pal system protei 95.1 0.041 9E-07 47.5 5.3 62 185-260 183-244 (263)
80 smart00028 TPR Tetratricopepti 95.0 0.037 8E-07 29.6 3.2 28 234-261 2-29 (34)
81 TIGR02521 type_IV_pilW type IV 94.9 0.067 1.4E-06 43.4 5.8 79 182-260 31-126 (234)
82 PF07719 TPR_2: Tetratricopept 94.8 0.035 7.5E-07 31.3 2.8 28 185-212 4-31 (34)
83 PRK10370 formate-dependent nit 94.6 0.079 1.7E-06 43.6 5.6 78 184-261 75-172 (198)
84 PRK12370 invasion protein regu 94.6 0.072 1.6E-06 50.9 6.1 56 189-261 345-400 (553)
85 PF13424 TPR_12: Tetratricopep 94.6 0.049 1.1E-06 37.2 3.7 30 232-261 4-33 (78)
86 KOG1840 Kinesin light chain [C 94.6 0.078 1.7E-06 49.9 6.0 71 181-260 324-394 (508)
87 KOG1125 TPR repeat-containing 94.5 0.032 7E-07 52.2 3.2 73 188-260 436-525 (579)
88 PF14853 Fis1_TPR_C: Fis1 C-te 94.5 0.04 8.7E-07 35.3 2.7 27 235-261 3-29 (53)
89 PF13176 TPR_7: Tetratricopept 94.4 0.045 9.7E-07 31.8 2.6 26 186-211 3-28 (36)
90 PF13174 TPR_6: Tetratricopept 94.3 0.034 7.4E-07 31.1 2.0 26 235-260 2-27 (33)
91 PF12862 Apc5: Anaphase-promot 94.3 0.15 3.3E-06 36.6 5.8 62 192-261 8-69 (94)
92 PF10602 RPN7: 26S proteasome 94.3 0.17 3.7E-06 41.0 6.8 63 183-259 37-99 (177)
93 PF00515 TPR_1: Tetratricopept 94.3 0.047 1E-06 31.0 2.6 28 185-212 4-31 (34)
94 CHL00033 ycf3 photosystem I as 94.2 0.15 3.3E-06 40.4 6.3 67 184-260 74-140 (168)
95 PRK09782 bacteriophage N4 rece 94.2 0.1 2.2E-06 53.2 6.3 78 184-261 611-705 (987)
96 TIGR03302 OM_YfiO outer membra 94.1 0.12 2.7E-06 43.1 5.7 58 187-258 171-228 (235)
97 KOG1173 Anaphase-promoting com 94.1 0.066 1.4E-06 50.1 4.3 67 184-260 416-482 (611)
98 COG3063 PilF Tfp pilus assembl 94.0 0.092 2E-06 44.1 4.7 65 182-261 103-167 (250)
99 COG5010 TadD Flp pilus assembl 94.0 0.11 2.3E-06 44.2 5.0 59 185-260 103-161 (257)
100 PF13181 TPR_8: Tetratricopept 93.7 0.084 1.8E-06 29.8 2.8 28 234-261 2-29 (34)
101 PRK02603 photosystem I assembl 93.6 0.21 4.6E-06 39.8 6.0 49 183-248 73-121 (172)
102 PF10579 Rapsyn_N: Rapsyn N-te 93.6 0.32 7E-06 33.7 5.9 64 181-258 5-68 (80)
103 KOG0624 dsRNA-activated protei 93.5 0.073 1.6E-06 47.3 3.4 82 180-261 36-134 (504)
104 PF09295 ChAPs: ChAPs (Chs5p-A 93.4 0.16 3.4E-06 46.5 5.5 57 185-258 237-293 (395)
105 KOG4626 O-linked N-acetylgluco 93.4 0.08 1.7E-06 50.4 3.5 65 180-261 114-178 (966)
106 PF12688 TPR_5: Tetratrico pep 93.3 0.3 6.6E-06 36.9 6.1 60 187-260 6-65 (120)
107 PF03704 BTAD: Bacterial trans 93.3 0.63 1.4E-05 35.8 8.1 73 188-260 12-89 (146)
108 PRK15331 chaperone protein Sic 93.2 0.21 4.6E-06 39.8 5.2 60 182-258 37-96 (165)
109 PF08631 SPO22: Meiosis protei 93.1 0.15 3.3E-06 44.2 4.9 85 172-260 25-110 (278)
110 KOG1173 Anaphase-promoting com 92.9 0.22 4.8E-06 46.7 5.7 60 184-260 457-516 (611)
111 TIGR02917 PEP_TPR_lipo putativ 92.7 0.19 4.2E-06 49.4 5.5 61 183-260 23-83 (899)
112 PRK11447 cellulose synthase su 92.7 0.22 4.8E-06 51.8 6.1 58 187-261 356-413 (1157)
113 PRK10370 formate-dependent nit 92.6 0.29 6.2E-06 40.3 5.5 64 187-260 71-137 (198)
114 PRK15179 Vi polysaccharide bio 92.3 0.3 6.6E-06 47.9 6.1 59 185-260 123-181 (694)
115 cd02677 MIT_SNX15 MIT: domain 92.1 0.39 8.4E-06 33.1 4.8 59 181-240 5-63 (75)
116 KOG1130 Predicted G-alpha GTPa 92.0 0.15 3.3E-06 46.3 3.3 74 176-260 189-262 (639)
117 TIGR02917 PEP_TPR_lipo putativ 92.0 0.35 7.6E-06 47.6 6.3 58 187-261 842-899 (899)
118 PF13429 TPR_15: Tetratricopep 91.9 0.65 1.4E-05 40.0 7.2 76 185-260 149-241 (280)
119 KOG2002 TPR-containing nuclear 91.9 0.26 5.5E-06 49.1 5.0 67 194-260 624-707 (1018)
120 PF10952 DUF2753: Protein of u 91.8 0.83 1.8E-05 34.6 6.5 71 186-258 5-75 (140)
121 PRK15174 Vi polysaccharide exp 91.8 0.36 7.8E-06 47.2 6.0 25 187-211 289-313 (656)
122 PRK11788 tetratricopeptide rep 91.6 0.5 1.1E-05 42.4 6.4 25 186-210 73-97 (389)
123 cd02683 MIT_1 MIT: domain cont 91.6 0.37 8E-06 33.4 4.2 59 183-242 7-65 (77)
124 PRK11447 cellulose synthase su 91.5 0.36 7.8E-06 50.3 6.0 58 187-261 274-331 (1157)
125 PF13512 TPR_18: Tetratricopep 91.5 0.63 1.4E-05 36.2 5.9 62 184-259 12-73 (142)
126 cd02684 MIT_2 MIT: domain cont 91.4 0.39 8.5E-06 33.1 4.2 61 179-240 3-63 (75)
127 PF11817 Foie-gras_1: Foie gra 91.4 0.49 1.1E-05 40.4 5.8 63 187-260 183-245 (247)
128 cd05804 StaR_like StaR_like; a 91.4 0.5 1.1E-05 41.9 6.1 73 188-260 120-213 (355)
129 PRK10803 tol-pal system protei 91.3 0.54 1.2E-05 40.6 6.0 59 188-260 148-207 (263)
130 KOG1129 TPR repeat-containing 91.1 0.31 6.6E-06 43.2 4.2 59 185-260 327-385 (478)
131 PF13414 TPR_11: TPR repeat; P 91.1 0.17 3.6E-06 33.5 2.1 29 233-261 3-31 (69)
132 cd02681 MIT_calpain7_1 MIT: do 91.0 0.42 9.2E-06 33.0 4.1 60 182-242 6-66 (76)
133 PRK09782 bacteriophage N4 rece 91.0 0.47 1E-05 48.5 6.0 22 191-212 585-606 (987)
134 PF04212 MIT: MIT (microtubule 90.8 0.49 1.1E-05 31.8 4.2 34 182-215 5-38 (69)
135 KOG2003 TPR repeat-containing 90.3 0.26 5.7E-06 45.3 3.2 28 184-211 492-519 (840)
136 COG1729 Uncharacterized protei 90.1 0.72 1.6E-05 39.6 5.5 58 189-260 185-242 (262)
137 PRK11788 tetratricopeptide rep 90.1 0.78 1.7E-05 41.1 6.2 84 178-261 31-135 (389)
138 cd05804 StaR_like StaR_like; a 89.7 0.77 1.7E-05 40.7 5.7 29 185-213 151-179 (355)
139 PF14938 SNAP: Soluble NSF att 89.5 0.69 1.5E-05 40.2 5.1 70 179-260 32-101 (282)
140 KOG4648 Uncharacterized conser 89.4 1 2.2E-05 40.2 6.0 59 186-261 135-193 (536)
141 KOG2002 TPR-containing nuclear 89.3 0.94 2E-05 45.3 6.2 62 186-261 274-335 (1018)
142 PRK15179 Vi polysaccharide bio 89.2 0.68 1.5E-05 45.5 5.3 62 183-261 155-216 (694)
143 PF13428 TPR_14: Tetratricopep 88.5 0.59 1.3E-05 28.2 2.9 27 235-261 3-29 (44)
144 PRK15174 Vi polysaccharide exp 88.4 0.84 1.8E-05 44.7 5.4 26 235-260 286-311 (656)
145 PRK12370 invasion protein regu 88.4 1.1 2.4E-05 42.9 6.1 76 185-260 375-468 (553)
146 cd02682 MIT_AAA_Arch MIT: doma 88.3 1.5 3.2E-05 30.2 5.0 63 181-244 5-67 (75)
147 PRK15331 chaperone protein Sic 88.0 1.4 3E-05 35.1 5.4 55 189-260 78-132 (165)
148 KOG4234 TPR repeat-containing 88.0 1.3 2.8E-05 36.7 5.3 62 183-261 135-196 (271)
149 PF13374 TPR_10: Tetratricopep 87.9 0.53 1.2E-05 27.4 2.4 32 183-214 3-34 (42)
150 KOG0624 dsRNA-activated protei 87.8 0.42 9.1E-06 42.6 2.6 37 176-212 263-299 (504)
151 cd02678 MIT_VPS4 MIT: domain c 87.8 1.1 2.5E-05 30.6 4.3 61 180-241 4-64 (75)
152 KOG0553 TPR repeat-containing 87.6 1.3 2.8E-05 38.6 5.4 58 187-261 120-177 (304)
153 PF13181 TPR_8: Tetratricopept 87.4 0.67 1.4E-05 25.9 2.5 28 185-212 4-31 (34)
154 KOG2076 RNA polymerase III tra 87.3 1.1 2.4E-05 44.3 5.4 64 182-261 414-477 (895)
155 PF10300 DUF3808: Protein of u 87.2 1.6 3.5E-05 40.9 6.3 60 187-259 272-331 (468)
156 COG4105 ComL DNA uptake lipopr 86.5 1.7 3.8E-05 37.1 5.5 65 181-259 33-97 (254)
157 PF07721 TPR_4: Tetratricopept 86.0 1.2 2.6E-05 23.6 2.9 23 235-257 3-25 (26)
158 cd02656 MIT MIT: domain contai 85.6 1.9 4.1E-05 29.4 4.5 58 182-240 6-63 (75)
159 COG4783 Putative Zn-dependent 85.6 2.1 4.5E-05 39.7 5.9 55 189-260 347-401 (484)
160 PRK10049 pgaA outer membrane p 85.2 1.9 4.1E-05 43.0 6.0 28 185-212 52-79 (765)
161 KOG3785 Uncharacterized conser 85.1 1.6 3.5E-05 39.2 4.8 54 189-259 64-117 (557)
162 cd02679 MIT_spastin MIT: domai 84.5 3.6 7.7E-05 28.6 5.4 53 194-246 20-76 (79)
163 KOG0686 COP9 signalosome, subu 84.4 1.8 3.9E-05 39.4 4.8 60 186-259 154-213 (466)
164 smart00745 MIT Microtubule Int 84.1 3.7 8E-05 28.0 5.4 34 181-214 7-40 (77)
165 KOG0551 Hsp90 co-chaperone CNS 83.9 2.2 4.7E-05 38.0 5.0 53 191-260 128-180 (390)
166 smart00028 TPR Tetratricopepti 83.9 1.5 3.2E-05 22.7 2.8 26 186-211 5-30 (34)
167 COG3063 PilF Tfp pilus assembl 83.6 3.1 6.8E-05 35.1 5.6 82 179-260 32-130 (250)
168 KOG1125 TPR repeat-containing 83.4 1.9 4E-05 40.8 4.7 49 203-261 444-492 (579)
169 PRK10049 pgaA outer membrane p 83.3 2.7 5.9E-05 41.9 6.2 27 187-213 364-390 (765)
170 PF13429 TPR_15: Tetratricopep 82.4 1.9 4E-05 37.1 4.1 58 186-260 218-275 (280)
171 TIGR03504 FimV_Cterm FimV C-te 81.5 2.2 4.7E-05 26.1 3.0 25 236-260 2-26 (44)
172 PF00244 14-3-3: 14-3-3 protei 81.3 2.7 5.8E-05 35.6 4.6 55 197-260 141-196 (236)
173 PF04733 Coatomer_E: Coatomer 81.2 1.9 4.1E-05 37.7 3.8 28 234-261 202-229 (290)
174 PF12968 DUF3856: Domain of Un 80.8 7.6 0.00016 29.5 6.2 64 190-259 63-126 (144)
175 PF13174 TPR_6: Tetratricopept 80.2 3.1 6.6E-05 22.7 3.2 26 187-212 5-30 (33)
176 COG5010 TadD Flp pilus assembl 79.9 5.5 0.00012 34.1 5.9 55 185-256 137-191 (257)
177 KOG1130 Predicted G-alpha GTPa 79.9 2.9 6.4E-05 38.3 4.5 62 182-256 17-78 (639)
178 KOG2796 Uncharacterized conser 79.4 2.8 6.1E-05 36.2 4.0 59 185-260 255-313 (366)
179 KOG2376 Signal recognition par 79.2 5.4 0.00012 38.1 6.1 70 185-259 113-201 (652)
180 PRK10153 DNA-binding transcrip 79.2 4.5 9.8E-05 38.5 5.8 56 188-261 426-481 (517)
181 PF13428 TPR_14: Tetratricopep 79.1 2.7 5.8E-05 25.2 2.9 27 187-213 6-32 (44)
182 PLN02789 farnesyltranstransfer 78.9 3 6.5E-05 37.1 4.3 21 193-213 48-68 (320)
183 cd02680 MIT_calpain7_2 MIT: do 78.5 2.5 5.3E-05 29.1 2.8 33 182-214 6-38 (75)
184 PF09976 TPR_21: Tetratricopep 78.2 4.6 0.0001 31.0 4.8 55 188-260 91-145 (145)
185 PF12688 TPR_5: Tetratrico pep 78.1 8.2 0.00018 29.1 5.9 60 187-260 43-102 (120)
186 PLN03098 LPA1 LOW PSII ACCUMUL 78.0 2.1 4.5E-05 39.6 3.0 32 230-261 72-103 (453)
187 KOG1155 Anaphase-promoting com 77.9 4.8 0.00011 37.4 5.3 73 188-260 370-459 (559)
188 KOG1126 DNA-binding cell divis 77.8 2 4.2E-05 41.2 2.9 78 184-261 423-517 (638)
189 KOG3785 Uncharacterized conser 76.1 5.4 0.00012 35.9 5.0 51 185-252 154-204 (557)
190 KOG1586 Protein required for f 75.2 13 0.00029 31.6 6.8 68 181-259 111-180 (288)
191 KOG1941 Acetylcholine receptor 74.9 6.6 0.00014 35.5 5.2 80 181-260 5-110 (518)
192 KOG0739 AAA+-type ATPase [Post 74.9 4.2 9.1E-05 35.9 3.9 35 179-213 7-41 (439)
193 PF13432 TPR_16: Tetratricopep 74.6 3.4 7.4E-05 26.7 2.7 25 237-261 1-25 (65)
194 KOG1128 Uncharacterized conser 74.2 3.8 8.3E-05 39.9 3.8 75 186-261 489-581 (777)
195 PF13525 YfiO: Outer membrane 73.7 9.9 0.00022 31.1 5.8 66 196-261 104-169 (203)
196 PLN02789 farnesyltranstransfer 73.6 6.7 0.00014 34.9 5.0 29 233-261 142-170 (320)
197 KOG2376 Signal recognition par 72.6 12 0.00026 35.8 6.5 74 185-260 178-251 (652)
198 PF03704 BTAD: Bacterial trans 72.5 11 0.00025 28.6 5.6 61 181-258 61-121 (146)
199 KOG1128 Uncharacterized conser 72.4 6.4 0.00014 38.5 4.8 73 188-260 525-614 (777)
200 PRK14574 hmsH outer membrane p 72.2 7.9 0.00017 39.0 5.6 79 183-261 35-130 (822)
201 COG2976 Uncharacterized protei 71.4 14 0.00029 30.5 5.8 58 187-258 94-151 (207)
202 PRK14574 hmsH outer membrane p 70.7 10 0.00022 38.3 6.0 57 187-260 107-163 (822)
203 PRK04841 transcriptional regul 70.3 11 0.00024 38.0 6.4 28 233-260 531-558 (903)
204 KOG1126 DNA-binding cell divis 69.9 4.9 0.00011 38.6 3.4 23 189-211 496-518 (638)
205 KOG1174 Anaphase-promoting com 69.5 9.4 0.0002 35.1 5.0 78 183-260 301-395 (564)
206 PF04781 DUF627: Protein of un 68.7 13 0.00028 27.6 4.8 24 188-211 2-25 (111)
207 KOG3364 Membrane protein invol 68.0 6.2 0.00013 30.5 3.0 29 233-261 71-99 (149)
208 PRK10747 putative protoheme IX 65.2 15 0.00033 33.5 5.6 58 185-260 331-388 (398)
209 PF10516 SHNi-TPR: SHNi-TPR; 65.1 9.2 0.0002 22.5 2.8 26 188-213 7-32 (38)
210 smart00101 14_3_3 14-3-3 homol 65.1 17 0.00038 31.0 5.6 54 198-260 144-198 (244)
211 KOG1155 Anaphase-promoting com 63.2 15 0.00033 34.2 5.1 55 187-258 437-491 (559)
212 COG1729 Uncharacterized protei 61.7 19 0.00042 31.0 5.2 61 185-259 144-204 (262)
213 TIGR00540 hemY_coli hemY prote 61.5 19 0.00041 32.9 5.6 56 187-260 340-397 (409)
214 PF10516 SHNi-TPR: SHNi-TPR; 60.5 12 0.00026 22.0 2.7 27 235-261 3-29 (38)
215 KOG1156 N-terminal acetyltrans 60.4 12 0.00026 36.1 4.1 19 194-212 87-105 (700)
216 COG3947 Response regulator con 59.6 33 0.00072 30.2 6.2 41 220-260 266-306 (361)
217 KOG1585 Protein required for f 59.4 27 0.00059 30.0 5.6 26 189-214 117-142 (308)
218 KOG2114 Vacuolar assembly/sort 59.3 11 0.00023 37.6 3.6 34 182-215 368-401 (933)
219 PF06957 COPI_C: Coatomer (COP 59.1 23 0.0005 32.8 5.6 63 183-247 205-267 (422)
220 PF13371 TPR_9: Tetratricopept 58.9 12 0.00027 24.4 3.0 31 183-213 30-60 (73)
221 COG4700 Uncharacterized protei 57.5 32 0.0007 28.4 5.5 57 187-259 94-150 (251)
222 KOG0276 Vesicle coat complex C 56.1 21 0.00045 34.5 4.8 74 183-256 667-744 (794)
223 PRK14720 transcript cleavage f 55.6 22 0.00047 36.2 5.2 58 185-260 119-176 (906)
224 PF13512 TPR_18: Tetratricopep 53.8 54 0.0012 25.5 6.1 48 187-248 52-99 (142)
225 PF04184 ST7: ST7 protein; In 53.3 25 0.00054 33.2 4.8 65 196-260 214-286 (539)
226 KOG0547 Translocase of outer m 52.6 31 0.00067 32.5 5.2 78 183-260 395-489 (606)
227 PF08631 SPO22: Meiosis protei 51.2 37 0.0008 29.3 5.5 59 193-260 4-63 (278)
228 PRK04841 transcriptional regul 50.9 39 0.00085 34.1 6.3 60 189-260 459-518 (903)
229 COG4235 Cytochrome c biogenesi 50.9 69 0.0015 28.1 6.9 74 187-260 161-254 (287)
230 COG0457 NrfG FOG: TPR repeat [ 49.8 46 0.00099 25.4 5.4 27 234-260 203-229 (291)
231 PF11207 DUF2989: Protein of u 49.5 28 0.0006 28.8 4.1 49 192-253 150-198 (203)
232 PRK10866 outer membrane biogen 49.5 59 0.0013 27.5 6.3 63 199-261 141-203 (243)
233 COG2956 Predicted N-acetylgluc 49.4 52 0.0011 29.5 5.9 56 187-258 219-274 (389)
234 KOG1941 Acetylcholine receptor 47.3 39 0.00084 30.8 4.9 60 194-260 174-233 (518)
235 PF12569 NARP1: NMDA receptor- 47.3 39 0.00084 32.2 5.3 28 233-260 38-65 (517)
236 PF01272 GreA_GreB: Transcript 47.2 31 0.00067 23.5 3.5 24 108-131 42-65 (77)
237 PF14853 Fis1_TPR_C: Fis1 C-te 46.1 61 0.0013 20.5 4.5 24 188-211 7-30 (53)
238 PF04184 ST7: ST7 protein; In 46.0 51 0.0011 31.2 5.6 54 186-254 263-316 (539)
239 PF06552 TOM20_plant: Plant sp 45.5 53 0.0011 26.7 5.0 36 196-248 49-84 (186)
240 PF08969 USP8_dimer: USP8 dime 45.0 36 0.00079 25.1 3.9 45 170-214 26-70 (115)
241 PF10255 Paf67: RNA polymerase 44.3 26 0.00055 32.3 3.4 54 205-260 138-191 (404)
242 KOG3081 Vesicle coat complex C 44.3 40 0.00086 29.3 4.3 28 234-261 208-235 (299)
243 KOG0292 Vesicle coat complex C 43.8 73 0.0016 32.4 6.5 34 179-212 988-1021(1202)
244 KOG2076 RNA polymerase III tra 43.0 49 0.0011 33.3 5.3 32 182-213 139-170 (895)
245 PF07720 TPR_3: Tetratricopept 42.6 40 0.00086 19.5 2.9 25 186-210 5-31 (36)
246 PRK14720 transcript cleavage f 42.6 58 0.0013 33.3 5.9 27 235-261 118-144 (906)
247 COG2956 Predicted N-acetylgluc 42.1 67 0.0015 28.8 5.5 38 170-210 98-135 (389)
248 PF12063 DUF3543: Domain of un 42.0 46 0.001 28.2 4.5 56 190-246 175-237 (238)
249 PF13812 PPR_3: Pentatricopept 41.9 44 0.00096 17.9 3.1 25 234-258 2-26 (34)
250 PF01535 PPR: PPR repeat; Int 41.7 34 0.00074 17.8 2.5 24 235-258 2-25 (31)
251 PF15469 Sec5: Exocyst complex 41.6 24 0.00052 28.3 2.6 26 190-215 94-119 (182)
252 PF04010 DUF357: Protein of un 41.5 39 0.00085 23.1 3.3 40 174-213 27-66 (75)
253 PRK00226 greA transcription el 40.7 60 0.0013 25.5 4.7 24 108-131 122-145 (157)
254 PF06069 PerC: PerC transcript 39.4 73 0.0016 22.7 4.4 25 189-213 7-31 (90)
255 KOG0376 Serine-threonine phosp 39.3 25 0.00055 32.8 2.6 56 187-259 43-98 (476)
256 KOG0985 Vesicle coat protein c 38.6 51 0.0011 34.1 4.7 51 184-259 1196-1246(1666)
257 KOG2300 Uncharacterized conser 37.7 1.1E+02 0.0024 29.0 6.4 63 194-259 287-349 (629)
258 PRK10747 putative protoheme IX 37.5 91 0.002 28.4 6.0 35 177-211 79-113 (398)
259 PF13041 PPR_2: PPR repeat fam 36.4 41 0.0009 20.3 2.6 22 190-211 11-32 (50)
260 PF05053 Menin: Menin; InterP 35.9 1.1E+02 0.0024 29.4 6.2 26 188-213 324-349 (618)
261 PF09986 DUF2225: Uncharacteri 35.3 65 0.0014 26.8 4.3 60 191-260 86-145 (214)
262 PRK05892 nucleoside diphosphat 34.2 1.7E+02 0.0037 23.1 6.3 24 108-131 121-144 (158)
263 TIGR00540 hemY_coli hemY prote 34.1 1.2E+02 0.0025 27.7 6.2 84 177-260 79-180 (409)
264 PF09986 DUF2225: Uncharacteri 34.0 1.4E+02 0.003 24.9 6.0 66 184-260 127-192 (214)
265 TIGR01462 greA transcription e 33.8 1.1E+02 0.0024 23.8 5.1 25 107-131 116-140 (151)
266 PF09122 DUF1930: Domain of un 33.7 65 0.0014 21.3 3.1 23 110-132 35-57 (68)
267 KOG1174 Anaphase-promoting com 33.5 89 0.0019 29.1 5.0 51 193-261 449-499 (564)
268 TIGR01461 greB transcription e 33.2 1E+02 0.0022 24.3 4.9 24 108-131 119-142 (156)
269 COG4783 Putative Zn-dependent 33.0 1.3E+02 0.0027 28.4 6.0 73 187-260 379-452 (484)
270 PF10938 YfdX: YfdX protein; 32.7 52 0.0011 25.9 3.1 71 180-260 73-144 (155)
271 TIGR00756 PPR pentatricopeptid 32.2 78 0.0017 16.6 3.1 25 235-259 2-26 (35)
272 PF13838 Clathrin_H_link: Clat 30.8 39 0.00085 22.6 1.8 23 186-208 10-32 (66)
273 KOG4642 Chaperone-dependent E3 29.2 1E+02 0.0023 26.4 4.4 59 185-260 47-105 (284)
274 PF02064 MAS20: MAS20 protein 28.8 73 0.0016 24.1 3.2 40 175-214 56-95 (121)
275 COG3071 HemY Uncharacterized e 28.1 1.7E+02 0.0038 26.7 5.9 58 185-260 331-388 (400)
276 PF09295 ChAPs: ChAPs (Chs5p-A 27.9 1.7E+02 0.0036 27.0 6.0 28 233-260 234-261 (395)
277 KOG4563 Cell cycle-regulated h 27.8 1.6E+02 0.0034 26.8 5.5 40 177-216 36-75 (400)
278 PRK10941 hypothetical protein; 27.0 1.6E+02 0.0034 25.5 5.4 55 187-258 186-240 (269)
279 KOG2300 Uncharacterized conser 26.7 1.1E+02 0.0024 29.0 4.5 39 196-248 381-419 (629)
280 PRK10941 hypothetical protein; 25.6 92 0.002 27.0 3.7 32 229-260 177-208 (269)
281 PRK05753 nucleoside diphosphat 25.5 1.6E+02 0.0035 22.6 4.7 24 108-131 91-114 (137)
282 PF04733 Coatomer_E: Coatomer 24.8 75 0.0016 27.7 3.1 52 186-254 205-256 (290)
283 PF12569 NARP1: NMDA receptor- 24.3 2.2E+02 0.0047 27.3 6.2 53 190-259 202-254 (517)
284 KOG1129 TPR repeat-containing 24.2 1.4E+02 0.0031 26.9 4.5 74 188-261 229-318 (478)
285 KOG3807 Predicted membrane pro 24.0 1.3E+02 0.0028 27.2 4.3 63 196-258 230-300 (556)
286 KOG2471 TPR repeat-containing 24.0 69 0.0015 30.4 2.7 73 187-259 288-361 (696)
287 PF08424 NRDE-2: NRDE-2, neces 23.7 1.9E+02 0.0041 25.5 5.5 68 193-260 113-181 (321)
288 PF05843 Suf: Suppressor of fo 23.6 2.6E+02 0.0056 24.1 6.2 49 195-260 49-97 (280)
289 smart00386 HAT HAT (Half-A-TPR 23.6 84 0.0018 16.2 2.1 18 196-213 1-18 (33)
290 COG5159 RPN6 26S proteasome re 23.3 1.6E+02 0.0035 26.1 4.6 56 187-251 8-63 (421)
291 KOG1586 Protein required for f 23.0 2.1E+02 0.0046 24.6 5.2 33 179-211 30-63 (288)
292 COG0457 NrfG FOG: TPR repeat [ 22.8 2.7E+02 0.0059 20.8 5.8 25 186-210 63-87 (291)
293 COG3118 Thioredoxin domain-con 22.6 1.7E+02 0.0037 25.8 4.7 54 185-255 137-190 (304)
294 COG0024 Map Methionine aminope 22.4 3E+02 0.0065 23.7 6.2 52 66-125 86-146 (255)
295 PRK01885 greB transcription el 22.3 1.8E+02 0.0039 22.9 4.5 23 109-131 122-144 (157)
296 PF09311 Rab5-bind: Rabaptin-l 22.2 91 0.002 25.2 2.9 30 232-261 139-168 (181)
297 PF08437 Glyco_transf_8C: Glyc 21.7 69 0.0015 20.6 1.7 28 180-207 25-52 (57)
298 PF01346 FKBP_N: Domain amino 21.3 82 0.0018 23.3 2.3 14 45-58 111-124 (124)
299 KOG2610 Uncharacterized conser 21.3 2.8E+02 0.006 25.3 5.8 79 183-261 104-203 (491)
300 PF07163 Pex26: Pex26 protein; 21.2 2E+02 0.0043 25.3 4.8 68 186-256 39-106 (309)
301 PF02071 NSF: Aromatic-di-Alan 20.8 55 0.0012 14.1 0.7 8 202-209 2-9 (12)
302 TIGR00985 3a0801s04tom mitocho 20.6 1.6E+02 0.0035 23.1 3.8 41 174-214 82-123 (148)
303 PRK13184 pknD serine/threonine 20.5 2.6E+02 0.0056 28.9 6.2 77 185-261 478-580 (932)
304 PLN03218 maturation of RBCL 1; 20.5 2.1E+02 0.0046 30.0 5.7 55 190-261 692-747 (1060)
305 KOG4509 Uncharacterized conser 20.3 89 0.0019 25.4 2.3 36 179-214 12-47 (247)
306 PF11817 Foie-gras_1: Foie gra 20.2 2.5E+02 0.0054 23.7 5.3 50 199-259 155-204 (247)
307 KOG2460 Signal recognition par 20.2 1.7E+02 0.0038 27.9 4.5 84 172-258 90-177 (593)
308 COG0782 Uncharacterized conser 20.0 1.9E+02 0.0041 22.6 4.2 23 108-130 115-137 (151)
No 1
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-42 Score=302.20 Aligned_cols=204 Identities=40% Similarity=0.605 Sum_probs=183.4
Q ss_pred eeEeCCcEEEEEEecCCC-C-CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcE
Q 024876 47 VEVLHEKVTKQIIKEGHG-Q-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEH 124 (261)
Q Consensus 47 ~~~~~~gi~k~vl~~G~G-~-~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~ 124 (261)
+.+++++|.|+||++|.| . +|..|..|+|||.|++.+ + +|+++. ..|.|.+|++..+|.||+.+|..|++||+
T Consensus 79 ~el~Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~-~-~f~~~~---~~fe~~~Ge~~~vi~Gle~al~~M~~GE~ 153 (397)
T KOG0543|consen 79 VELLDGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELED-G-VFDQRE---LRFEFGEGEDIDVIEGLEIALRMMKVGEV 153 (397)
T ss_pred ecccCCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECC-c-ceeccc---cceEEecCCccchhHHHHHHHHhcCccce
Confidence 445599999999999999 3 999999999999999986 4 777653 34888888833799999999999999999
Q ss_pred EEEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecc-cCccccccCCCchhhHhhhhcccchhhHHhhhhhhHHHHHH
Q 024876 125 ALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD-ETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQ 203 (261)
Q Consensus 125 ~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~-~~~~~~e~~~l~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~ 203 (261)
+.|+|+|.|+||..+.. ++.|||+++|.|+|+|++|. +... .|.+..++++..|.+.|+.||.+||+|+|..|..
T Consensus 154 a~v~i~~~YayG~~~~~-~p~IPPnA~l~yEVeL~~f~~~~~~---s~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~ 229 (397)
T KOG0543|consen 154 ALVTIDPKYAYGEEGGE-PPLIPPNATLLYEVELLDFELKEDE---SWKMFAEERLEAADRKKERGNVLFKEGKFKLAKK 229 (397)
T ss_pred EEEEeCcccccCCCCCC-CCCCCCCceEEEEEEEEeeecCccc---ccccchHHHHHHHHHHHHhhhHHHhhchHHHHHH
Confidence 99999999999954432 68999999999999999999 5554 9999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 204 QYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 204 ~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
.|.||+.+|+++.+++ +++.+.+..+++.||+|+|+||+|+++|..|+..|++||+
T Consensus 230 ~Yerav~~l~~~~~~~--~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 230 RYERAVSFLEYRRSFD--EEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhccccCC--HHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 9999999999876554 4778889999999999999999999999999999999985
No 2
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1e-30 Score=182.39 Aligned_cols=106 Identities=32% Similarity=0.537 Sum_probs=101.8
Q ss_pred cEEEEEEecCCCC-CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeC
Q 024876 53 KVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGW 131 (261)
Q Consensus 53 gi~k~vl~~G~G~-~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~ 131 (261)
|+.+++|..|+|. .|+.|++|++||++.+.| |+.|||+.+++.||.|.+|.+ ++|.||++++..|.+||+++++|+|
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~d-G~kfDSs~dr~kPfkf~IGkg-eVIkGwdegv~qmsvGekakLti~p 79 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQD-GKKFDSSRDRGKPFKFKIGKG-EVIKGWDEGVAQMSVGEKAKLTISP 79 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecC-CcEeecccccCCCeeEEecCc-ceeechhhcchhccccccceeeecc
Confidence 7899999999997 999999999999999988 899999999999999999999 9999999999999999999999999
Q ss_pred CCCcCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024876 132 ELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 162 (261)
Q Consensus 132 ~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~ 162 (261)
+|+||..|. +..||||++|+|+|||+++.
T Consensus 80 d~aYG~~G~--p~~IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 80 DYAYGPRGH--PGGIPPNATLVFDVELLKVN 108 (108)
T ss_pred ccccCCCCC--CCccCCCcEEEEEEEEEecC
Confidence 999999996 67899999999999999873
No 3
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.1e-31 Score=218.82 Aligned_cols=211 Identities=22% Similarity=0.304 Sum_probs=177.6
Q ss_pred eCCcEEEEEEecCCCC--CCCCCCEEEEEEEEEEeCC-CeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEE
Q 024876 50 LHEKVTKQIIKEGHGQ--KPSKYSTCFLHYRAWAEST-RHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHAL 126 (261)
Q Consensus 50 ~~~gi~k~vl~~G~G~--~p~~g~~V~v~y~~~~~~~-g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~ 126 (261)
.-.||.|+||..|+|. .-.+|.+|++||.....++ ++++|+|+..++|+.+++|.-| -.+.|+.+|.+|+++|.+.
T Consensus 8 ~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkF-kL~VwE~il~tM~v~Evaq 86 (329)
T KOG0545|consen 8 NVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKF-KLEVWEIILTTMRVHEVAQ 86 (329)
T ss_pred cchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeecccc-ccHHHHHHHHHHhhhhHHH
Confidence 3579999999999999 4568999999999987654 6799999999999999999984 5899999999999999999
Q ss_pred EEEeCCC--------------CcCCCCCC-----------------CCC----CCCCCCceEEEEEEeecccCccc-ccc
Q 024876 127 LHVGWEL--------------GYGKEGSF-----------------SFP----NVSPMADLVYEVVLIGFDETKEG-KAR 170 (261)
Q Consensus 127 ~~i~~~~--------------~yg~~g~~-----------------~~~----~ip~~~~l~~~iel~~v~~~~~~-~e~ 170 (261)
|+|.-.. +-|..... +.. -....++|+|.|+|+.|..+..+ ++.
T Consensus 87 F~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e~ 166 (329)
T KOG0545|consen 87 FWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRET 166 (329)
T ss_pred hhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhcccc
Confidence 9887421 11221000 000 01245789999999999999885 679
Q ss_pred CCCchhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhcccccccc-chhHHHHHHHhhhhhhhHHHHHHHHhhCH
Q 024876 171 SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-FGKYRDMALAVKNPCHLNMAACLLKLKRY 249 (261)
Q Consensus 171 ~~l~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~-~~~~~~~~~~l~~~~~~N~A~c~lKl~~~ 249 (261)
|.|+.++|+..+..++++||.+|+.|+|++|..+|+.|+.++.+....+. .+.+|.++..+...+++|+|.|+++.++|
T Consensus 167 WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~ 246 (329)
T KOG0545|consen 167 WQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY 246 (329)
T ss_pred ccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999987643332 24689999999999999999999999999
Q ss_pred HHHHHHHHhhcC
Q 024876 250 EEAIGQCSLVSK 261 (261)
Q Consensus 250 ~~ai~~c~~aL~ 261 (261)
.+++.+|+++|+
T Consensus 247 yevleh~seiL~ 258 (329)
T KOG0545|consen 247 YEVLEHCSEILR 258 (329)
T ss_pred HHHHHHHHHHHh
Confidence 999999999984
No 4
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.4e-29 Score=200.33 Aligned_cols=112 Identities=30% Similarity=0.475 Sum_probs=105.7
Q ss_pred cceeEeCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcE
Q 024876 45 SEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEH 124 (261)
Q Consensus 45 ~~~~~~~~gi~k~vl~~G~G~~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~ 124 (261)
..+.++++|++|++++.|+|..|..|++|+|||+|++.+ |++|||++.+++|+.|.|| .+|+||.++|.+|++|++
T Consensus 94 ~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~-G~vFDsS~~rg~p~~f~l~---~vI~Gw~egl~~M~vG~k 169 (205)
T COG0545 94 KGVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLID-GTVFDSSYDRGQPAEFPLG---GVIPGWDEGLQGMKVGGK 169 (205)
T ss_pred CCceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCC-CCccccccccCCCceeecC---CeeehHHHHHhhCCCCce
Confidence 356789999999999999999999999999999999998 9999999999999999999 699999999999999999
Q ss_pred EEEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024876 125 ALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 162 (261)
Q Consensus 125 ~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~ 162 (261)
++++|||.++||..|. ++.||||++|+|+|+|++|.
T Consensus 170 ~~l~IP~~laYG~~g~--~g~Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 170 RKLTIPPELAYGERGV--PGVIPPNSTLVFEVELLDVK 205 (205)
T ss_pred EEEEeCchhccCcCCC--CCCCCCCCeEEEEEEEEecC
Confidence 9999999999999997 35599999999999999873
No 5
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.8e-25 Score=173.38 Aligned_cols=112 Identities=26% Similarity=0.455 Sum_probs=99.9
Q ss_pred CCcEEEEEEecCC-C-CCCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEE
Q 024876 51 HEKVTKQIIKEGH-G-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLH 128 (261)
Q Consensus 51 ~~gi~k~vl~~G~-G-~~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~ 128 (261)
.+.+...+++.-. - .+.+.||.+.+||++.+.| |++||||+..++|++|+||.+ ++|+|||.+|.+|++||++.++
T Consensus 67 ~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leD-Gt~fdSS~~rg~P~~f~LG~g-qVIkG~Dqgl~gMCvGEkRkl~ 144 (188)
T KOG0549|consen 67 DEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLED-GTKFDSSYSRGAPFTFTLGTG-QVIKGWDQGLLGMCVGEKRKLI 144 (188)
T ss_pred CCceeEEEEECCccccccccCCCEEEEEEEEEecC-CCEEeeeccCCCCEEEEeCCC-ceeccHhHHhhhhCcccceEEe
Confidence 3556666666632 2 2788999999999998887 999999999999999999999 9999999999999999999999
Q ss_pred EeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecccCcc
Q 024876 129 VGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE 166 (261)
Q Consensus 129 i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~~~~~ 166 (261)
|||+++||++|. ++.||++++|+|+|+|+++.....
T Consensus 145 IPp~LgYG~~G~--~~~IP~~A~LiFdiELv~i~~~~~ 180 (188)
T KOG0549|consen 145 IPPHLGYGERGA--PPKIPGDAVLIFDIELVKIERGPP 180 (188)
T ss_pred cCccccCccCCC--CCCCCCCeeEEEEEEEEEeecCCC
Confidence 999999999998 567999999999999999988753
No 6
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.92 E-value=8.9e-25 Score=180.55 Aligned_cols=112 Identities=22% Similarity=0.390 Sum_probs=105.1
Q ss_pred cceeEeCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcE
Q 024876 45 SEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEH 124 (261)
Q Consensus 45 ~~~~~~~~gi~k~vl~~G~G~~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~ 124 (261)
..+..+++|++|+|+++|+|..|..||.|+|||++++.+ |++|++++..+.|+.|.+| .+++||+++|.+|++|++
T Consensus 95 ~gv~~t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~d-G~vfdss~~~g~P~~f~l~---~vipG~~eaL~~M~~G~k 170 (206)
T PRK11570 95 EGVNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKLID-GTVFDSSVARGEPAEFPVN---GVIPGWIEALTLMPVGSK 170 (206)
T ss_pred CCcEECCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEECC-CCEEEeccCCCCCeEEEee---chhhHHHHHHcCCCCCCE
Confidence 357889999999999999999999999999999999986 8999999988899999997 689999999999999999
Q ss_pred EEEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024876 125 ALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 162 (261)
Q Consensus 125 ~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~ 162 (261)
+.|+||++++||..|. .+.|||+++|+|+|+|++|.
T Consensus 171 ~~~~IP~~lAYG~~g~--~~~Ipp~s~Lif~veLl~i~ 206 (206)
T PRK11570 171 WELTIPHELAYGERGA--GASIPPFSTLVFEVELLEIL 206 (206)
T ss_pred EEEEECHHHcCCCCCC--CCCcCCCCeEEEEEEEEEEC
Confidence 9999999999999987 47899999999999999873
No 7
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.5e-23 Score=172.43 Aligned_cols=110 Identities=26% Similarity=0.492 Sum_probs=103.4
Q ss_pred eEeCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcE-EecCCccchhHHHHHHhhcCCCCcEEE
Q 024876 48 EVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLE-MVLGKEKKEMTGLAIGVSSMKAGEHAL 126 (261)
Q Consensus 48 ~~~~~gi~k~vl~~G~G~~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~-~~lG~~~~~i~gle~~l~~Mk~Ge~~~ 126 (261)
.++++||+|+-++-|+|..+..|++|.+||.+++...|++|++++ .+.|+. |.+|.+ .+|+||+.+|.+|++|.+++
T Consensus 116 ~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~-~~kp~~~f~lg~g-~VIkG~d~gv~GMkvGGkRr 193 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNF-GGKPFKLFRLGSG-EVIKGWDVGVEGMKVGGKRR 193 (226)
T ss_pred eecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeeccc-CCCCccccccCCC-CCCchHHHhhhhhccCCeeE
Confidence 478999999999999999999999999999999996699999986 456888 999999 99999999999999999999
Q ss_pred EEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024876 127 LHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 162 (261)
Q Consensus 127 ~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~ 162 (261)
|+|||.++||..+. +.||||++|+|+|+|+.|.
T Consensus 194 viIPp~lgYg~~g~---~~IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 194 VIIPPELGYGKKGV---PEIPPNSTLVFDVELLSVK 226 (226)
T ss_pred EEeCccccccccCc---CcCCCCCcEEEEEEEEecC
Confidence 99999999999996 7999999999999999873
No 8
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.90 E-value=4.3e-23 Score=166.61 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=102.3
Q ss_pred cceeEeCCcEEEEEEec--CCCCCCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCC
Q 024876 45 SEVEVLHEKVTKQIIKE--GHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAG 122 (261)
Q Consensus 45 ~~~~~~~~gi~k~vl~~--G~G~~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~G 122 (261)
.....+++|++|.+++. |+|..|..||.|++||++++.+ |++|++++. ..|+.|.+|.+ .+++||+++|.+|++|
T Consensus 62 ~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~d-G~v~~ss~~-~~P~~f~vg~~-~vi~Gl~e~L~~Mk~G 138 (177)
T TIGR03516 62 VKYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALD-GDVIYSEEE-LGPQTYKVDQQ-DLFSGLRDGLKLMKEG 138 (177)
T ss_pred CCceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCC-CCEEEeCCC-CCCEEEEeCCc-chhHHHHHHHcCCCCC
Confidence 34578899999999977 5566999999999999999987 899999876 45999999998 8999999999999999
Q ss_pred cEEEEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024876 123 EHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 162 (261)
Q Consensus 123 e~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~ 162 (261)
|++.|++|++++||..|. .+.||||++|+|+|+|++|.
T Consensus 139 e~~~~~iP~~~AYG~~g~--~~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 139 ETATFLFPSHKAYGYYGD--QNKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred CEEEEEECHHHcCCCCCC--CCCcCcCCcEEEEEEEEEec
Confidence 999999999999999986 46799999999999999985
No 9
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.89 E-value=1.7e-22 Score=172.83 Aligned_cols=114 Identities=25% Similarity=0.473 Sum_probs=105.7
Q ss_pred ceeEeCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEE
Q 024876 46 EVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHA 125 (261)
Q Consensus 46 ~~~~~~~gi~k~vl~~G~G~~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~ 125 (261)
.+..+++|++|+|+++|+|..|..||.|+|||++++.+ |++|++++..+.|+.|.++ .+++||+++|.+|++|+++
T Consensus 140 gv~~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~d-G~vfdss~~~g~p~~f~l~---~vipG~~EaL~~Mk~Gek~ 215 (269)
T PRK10902 140 GVKTTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLID-GKEFDNSYTRGEPLSFRLD---GVIPGWTEGLKNIKKGGKI 215 (269)
T ss_pred CcEECCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeCC-CCEeeccccCCCceEEecC---CcchHHHHHHhcCCCCcEE
Confidence 46688999999999999999999999999999999876 8999999988899999997 6899999999999999999
Q ss_pred EEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecccCcc
Q 024876 126 LLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE 166 (261)
Q Consensus 126 ~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~~~~~ 166 (261)
.|+||+.++||..+. +.|||+++|+|+|+|++|.....
T Consensus 216 ~l~IP~~laYG~~g~---~gIppns~LvfeVeLl~V~~~~~ 253 (269)
T PRK10902 216 KLVIPPELAYGKAGV---PGIPANSTLVFDVELLDVKPAPK 253 (269)
T ss_pred EEEECchhhCCCCCC---CCCCCCCcEEEEEEEEEeccCcc
Confidence 999999999999985 68999999999999999986553
No 10
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.84 E-value=2.3e-20 Score=136.16 Aligned_cols=91 Identities=33% Similarity=0.557 Sum_probs=84.6
Q ss_pred CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCCCCCCCCC
Q 024876 66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN 145 (261)
Q Consensus 66 ~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~g~~~~~~ 145 (261)
.|+.||.|+|||++++.+ |++|++++..+.|++|.+|.+ .+++||+.+|.+|++||++.|.||+.++||..+.. .+.
T Consensus 4 ~~~~gd~V~i~y~~~~~~-g~~~~~~~~~~~~~~~~~g~~-~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~-~~~ 80 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLED-GKVFDSSYQEGEPFEFRLGSG-QVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLE-PPK 80 (94)
T ss_dssp SBSTTSEEEEEEEEEETT-SEEEEETTTTTSEEEEETTSS-SSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBC-TTT
T ss_pred cCCCCCEEEEEEEEEECC-CcEEEEeeecCcceeeeeccC-ccccchhhhcccccCCCEeeeEeCChhhcCccccC-CCC
Confidence 689999999999999985 999999988889999999999 89999999999999999999999999999998863 245
Q ss_pred CCCCCceEEEEEEe
Q 024876 146 VSPMADLVYEVVLI 159 (261)
Q Consensus 146 ip~~~~l~~~iel~ 159 (261)
||++++|+|+|+|+
T Consensus 81 ip~~~~l~f~Iell 94 (94)
T PF00254_consen 81 IPPNSTLVFEIELL 94 (94)
T ss_dssp BTTTSEEEEEEEEE
T ss_pred cCCCCeEEEEEEEC
Confidence 99999999999996
No 11
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.65 E-value=6.2e-16 Score=122.66 Aligned_cols=71 Identities=17% Similarity=0.249 Sum_probs=66.7
Q ss_pred CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCC
Q 024876 66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKE 138 (261)
Q Consensus 66 ~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~ 138 (261)
.++.|+.|++||++++.+ |++|+||+..+.|+.|.+|.+ .+++||+.+|.+|++|+++.|.|||+.+||..
T Consensus 4 ~i~~~~~V~v~Y~~~~~d-G~v~dst~~~~~P~~f~~G~g-~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~ 74 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDD-GSTAESTRNNGKPALFRLGDG-SLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVP 74 (156)
T ss_pred ccCCCCEEEEEEEEEeCC-CCEEEECCCCCCCEEEEeCCC-CccHHHHHHHcCCCCCCEEEEEEChHHhcCCC
Confidence 478899999999999976 899999987788999999999 89999999999999999999999999999985
No 12
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=7.4e-14 Score=110.70 Aligned_cols=71 Identities=24% Similarity=0.279 Sum_probs=66.8
Q ss_pred CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCC
Q 024876 66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKE 138 (261)
Q Consensus 66 ~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~ 138 (261)
++..|+.|++||++++.+ |++||+|.....|+.|.+|.+ ++++||+.||.+|.+|++..|.|||+.|||..
T Consensus 2 ~i~k~~~V~i~Y~~~~~d-g~v~Dtt~e~~~P~~~i~G~g-~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~ 72 (174)
T COG1047 2 KIEKGDVVSLHYTLKVED-GEVVDTTDENYGPLTFIVGAG-QLIPGLEEALLGKEVGEEFTVEIPPEDAFGEY 72 (174)
T ss_pred cccCCCEEEEEEEEEecC-CcEEEcccccCCCeEEEecCC-CcchhHHHHHhCCCCCceeEEEeCchHhcCCC
Confidence 467899999999999998 999999977578999999999 99999999999999999999999999999986
No 13
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.50 E-value=8.7e-14 Score=113.48 Aligned_cols=70 Identities=23% Similarity=0.338 Sum_probs=64.8
Q ss_pred CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCC
Q 024876 66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKE 138 (261)
Q Consensus 66 ~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~ 138 (261)
++..++.|+|+|++++.+ |++|++|.. ..|++|++|.+ .++|+|+.+|.+|.+|++..|+|+|+.+||..
T Consensus 2 kI~~~~vV~l~Y~l~~~d-G~v~dst~~-~~Pl~~~~G~g-~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~ 71 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTED-GVLVDESPV-SAPLDYLHGHG-SLISGLETALEGHEVGDKFDVAVGANDAYGQY 71 (196)
T ss_pred ccCCCCEEEEEEEEEeCC-CCEEEecCC-CCCeEEEeCCC-cchHHHHHHHcCCCCCCEEEEEEChHHhcCCC
Confidence 367899999999999976 899999964 67999999999 99999999999999999999999999999886
No 14
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=2.3e-13 Score=109.68 Aligned_cols=73 Identities=34% Similarity=0.445 Sum_probs=66.0
Q ss_pred hHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHH
Q 024876 177 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC 256 (261)
Q Consensus 177 e~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c 256 (261)
..+..+.++|..||.+|+.|.|..|..+|+.||..+.... .+++..||+|+|+|.+||+.|..||.+|
T Consensus 90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~------------~e~rsIly~Nraaa~iKl~k~e~aI~dc 157 (271)
T KOG4234|consen 90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS------------TEERSILYSNRAAALIKLRKWESAIEDC 157 (271)
T ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc------------HHHHHHHHhhhHHHHHHhhhHHHHHHHH
Confidence 3488999999999999999999999999999999987542 3567899999999999999999999999
Q ss_pred HhhcC
Q 024876 257 SLVSK 261 (261)
Q Consensus 257 ~~aL~ 261 (261)
++||+
T Consensus 158 sKaie 162 (271)
T KOG4234|consen 158 SKAIE 162 (271)
T ss_pred HhhHh
Confidence 99974
No 15
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=4.3e-12 Score=112.15 Aligned_cols=81 Identities=35% Similarity=0.565 Sum_probs=74.7
Q ss_pred ecCCCC-CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCC
Q 024876 60 KEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKE 138 (261)
Q Consensus 60 ~~G~G~-~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~ 138 (261)
++|.|. .|..|+.|.+||++++.+ |+.||||.+ +.|+.|.+|.| .+|.||+.++.+|+. |..
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~d-gt~fdss~d-~~~~~~~lg~g-~vi~~~~~gv~tm~~--------------g~~ 63 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLD-GTKFDSSRD-GDPFKFDLGKG-SVIKGWDLGVATMKK--------------GEA 63 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecC-CeecccccC-CCceeeecCCC-ccccccccccccccc--------------ccc
Confidence 479999 999999999999999998 999999988 88999999999 999999999999998 555
Q ss_pred CCCCCCCCCCCCceEEEEEEe
Q 024876 139 GSFSFPNVSPMADLVYEVVLI 159 (261)
Q Consensus 139 g~~~~~~ip~~~~l~~~iel~ 159 (261)
+. ||.||++++|.|+|+|+
T Consensus 64 ~~--pp~ip~~a~l~fe~el~ 82 (397)
T KOG0543|consen 64 GS--PPKIPSNATLLFEVELL 82 (397)
T ss_pred CC--CCCCCCCcceeeeeccc
Confidence 55 78899999999999984
No 16
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=1.4e-11 Score=110.82 Aligned_cols=75 Identities=32% Similarity=0.474 Sum_probs=68.4
Q ss_pred cCCCchhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCH
Q 024876 170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRY 249 (261)
Q Consensus 170 ~~~l~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~ 249 (261)
...++.+++++.+..+|.+||.+|+.|+|..||++|..||.++... ...|+|+|+||..+|+|
T Consensus 103 ~~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e-----------------piFYsNraAcY~~lgd~ 165 (606)
T KOG0547|consen 103 KKAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE-----------------PIFYSNRAACYESLGDW 165 (606)
T ss_pred hhccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC-----------------chhhhhHHHHHHHHhhH
Confidence 3456788999999999999999999999999999999999987531 47999999999999999
Q ss_pred HHHHHHHHhhcC
Q 024876 250 EEAIGQCSLVSK 261 (261)
Q Consensus 250 ~~ai~~c~~aL~ 261 (261)
.+++.+|++||+
T Consensus 166 ~~Vied~TkALE 177 (606)
T KOG0547|consen 166 EKVIEDCTKALE 177 (606)
T ss_pred HHHHHHHHHHhh
Confidence 999999999985
No 17
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=4.9e-11 Score=102.82 Aligned_cols=69 Identities=29% Similarity=0.408 Sum_probs=61.8
Q ss_pred hhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (261)
Q Consensus 180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a 259 (261)
+.|...|+.||.+||.++|+.|...|.++|+--..+ ..+.+.||+|+|+|++-+|+|..||.+|+.|
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D-------------~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~a 145 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCAD-------------PDLNAVLYTNRAAAQLYLGNYRSALNDCSAA 145 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCC-------------ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999999999999999999764322 4577899999999999999999999999999
Q ss_pred cC
Q 024876 260 SK 261 (261)
Q Consensus 260 L~ 261 (261)
|.
T Consensus 146 l~ 147 (390)
T KOG0551|consen 146 LK 147 (390)
T ss_pred Hh
Confidence 74
No 18
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=1.7e-10 Score=98.44 Aligned_cols=72 Identities=32% Similarity=0.415 Sum_probs=64.2
Q ss_pred CchhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHH
Q 024876 173 MTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEA 252 (261)
Q Consensus 173 l~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~a 252 (261)
.+..+-...|+++|.+||.+.+.++|..|+.+|.+||.+...+ ...|+|+|++|++||+|..|
T Consensus 72 ~~~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n-----------------AVyycNRAAAy~~Lg~~~~A 134 (304)
T KOG0553|consen 72 LTPEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN-----------------AVYYCNRAAAYSKLGEYEDA 134 (304)
T ss_pred cChHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-----------------chHHHHHHHHHHHhcchHHH
Confidence 3344778999999999999999999999999999999986432 47999999999999999999
Q ss_pred HHHHHhhcC
Q 024876 253 IGQCSLVSK 261 (261)
Q Consensus 253 i~~c~~aL~ 261 (261)
+++|..||.
T Consensus 135 VkDce~Al~ 143 (304)
T KOG0553|consen 135 VKDCESALS 143 (304)
T ss_pred HHHHHHHHh
Confidence 999999873
No 19
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.02 E-value=2.5e-10 Score=99.11 Aligned_cols=70 Identities=31% Similarity=0.418 Sum_probs=62.1
Q ss_pred chhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHH
Q 024876 174 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI 253 (261)
Q Consensus 174 ~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai 253 (261)
-.++.+..+..+|++||.+||+|+|.+|+.+|.+++....+ ....|.|+|++|+|++.|..|.
T Consensus 89 I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~-----------------NpV~~~NRA~AYlk~K~FA~AE 151 (536)
T KOG4648|consen 89 IAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPH-----------------NPVYHINRALAYLKQKSFAQAE 151 (536)
T ss_pred HHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCC-----------------CccchhhHHHHHHHHHHHHHHH
Confidence 35677888999999999999999999999999999987543 2478999999999999999999
Q ss_pred HHHHhhc
Q 024876 254 GQCSLVS 260 (261)
Q Consensus 254 ~~c~~aL 260 (261)
.+|+.||
T Consensus 152 ~DC~~Ai 158 (536)
T KOG4648|consen 152 EDCEAAI 158 (536)
T ss_pred HhHHHHH
Confidence 9999986
No 20
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=99.01 E-value=1.5e-08 Score=92.87 Aligned_cols=88 Identities=17% Similarity=0.288 Sum_probs=76.9
Q ss_pred CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCCCCCCCCC
Q 024876 66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN 145 (261)
Q Consensus 66 ~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~g~~~~~~ 145 (261)
.+..||.|+++|+++. +|..|+++. ..++.|.+|.+ .+++||+.+|.+|++|++..|.++....|+....
T Consensus 146 ~~~~gD~V~v~~~~~~--dg~~~~~~~--~~~~~~~lg~~-~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~----- 215 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFI--DGEAFEGGK--AENFSLELGSG-QFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL----- 215 (408)
T ss_pred ccCCCCEEEEEEEEEE--CCEECcCCC--CCCeEEEECCC-CcchhHHHHhCCCCCCCeeEEEecCccccCcccC-----
Confidence 5788999999999976 488888763 46899999999 8999999999999999999999998888876543
Q ss_pred CCCCCceEEEEEEeecccCc
Q 024876 146 VSPMADLVYEVVLIGFDETK 165 (261)
Q Consensus 146 ip~~~~l~~~iel~~v~~~~ 165 (261)
+|.++.|.|+|.+|....
T Consensus 216 --~gk~~~f~v~i~~I~~~~ 233 (408)
T TIGR00115 216 --AGKEATFKVTVKEVKEKE 233 (408)
T ss_pred --CCCeEEEEEEEEEeccCC
Confidence 588999999999998775
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.97 E-value=9.5e-10 Score=105.78 Aligned_cols=96 Identities=23% Similarity=0.279 Sum_probs=81.9
Q ss_pred CCCCCCCceEEEEEEeecccCccccccCCCchhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchh
Q 024876 144 PNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGK 223 (261)
Q Consensus 144 ~~ip~~~~l~~~iel~~v~~~~~~~e~~~l~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~ 223 (261)
+.+|++.++...+++.++.... .|.++.+++...+..+|+.||.+|+.|+|..|+..|++||.+...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~--------- 159 (615)
T TIGR00990 93 STAPKNAPVEPADELPEIDESS----VANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD--------- 159 (615)
T ss_pred CCCCCCCCCCccccccccchhh----cccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---------
Confidence 4566777777777777666543 799999999999999999999999999999999999999986431
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 224 YRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 224 ~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
...|+|+|.||+++++|++|+.+|++||+
T Consensus 160 ---------~~~~~n~a~~~~~l~~~~~Ai~~~~~al~ 188 (615)
T TIGR00990 160 ---------PVYYSNRAACHNALGDWEKVVEDTTAALE 188 (615)
T ss_pred ---------hHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 14699999999999999999999999974
No 22
>PRK01490 tig trigger factor; Provisional
Probab=98.87 E-value=5.9e-08 Score=89.68 Aligned_cols=88 Identities=16% Similarity=0.280 Sum_probs=76.1
Q ss_pred CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCCCCCCCCC
Q 024876 66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN 145 (261)
Q Consensus 66 ~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~g~~~~~~ 145 (261)
.+..||.|+|+|+++. +|+.|+++ ...++.|.+|.+ .+++||+.+|.||++|++..|.++....|+....
T Consensus 157 ~~~~gD~V~vd~~~~~--~g~~~~~~--~~~~~~~~lg~~-~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l----- 226 (435)
T PRK01490 157 PAENGDRVTIDFVGSI--DGEEFEGG--KAEDFSLELGSG-RFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL----- 226 (435)
T ss_pred cCCCCCEEEEEEEEEE--CCEECcCC--CCCceEEEEcCC-CcchhHHHHhCCCCCCCeeEEEecCccccccccC-----
Confidence 4789999999999997 47888876 346899999999 8999999999999999999999988777765443
Q ss_pred CCCCCceEEEEEEeecccCc
Q 024876 146 VSPMADLVYEVVLIGFDETK 165 (261)
Q Consensus 146 ip~~~~l~~~iel~~v~~~~ 165 (261)
+|.++.|.|+|.+|....
T Consensus 227 --agk~~~f~v~v~~V~~~~ 244 (435)
T PRK01490 227 --AGKEATFKVTVKEVKEKE 244 (435)
T ss_pred --CCCeEEEEEEEEEeccCC
Confidence 578899999999998765
No 23
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.9e-09 Score=96.93 Aligned_cols=64 Identities=33% Similarity=0.445 Sum_probs=56.5
Q ss_pred hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
.+...|++||.+|+.|+|..|++.|.+||..-..+ ..+|+|+|+||+||+.+..|+.+|..++
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D-----------------a~lYsNRAac~~kL~~~~~aL~Da~~~i 419 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED-----------------ARLYSNRAACYLKLGEYPEALKDAKKCI 419 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch-----------------hHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 46778899999999999999999999999764221 3799999999999999999999999987
Q ss_pred C
Q 024876 261 K 261 (261)
Q Consensus 261 ~ 261 (261)
+
T Consensus 420 e 420 (539)
T KOG0548|consen 420 E 420 (539)
T ss_pred h
Confidence 4
No 24
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.1e-07 Score=85.49 Aligned_cols=87 Identities=15% Similarity=0.264 Sum_probs=73.7
Q ss_pred CCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCCCCCCCCCC
Q 024876 67 PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNV 146 (261)
Q Consensus 67 p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~g~~~~~~i 146 (261)
+..||+|+|.|.|+. +|..|... ....+.|.||.| ++||||+.+|.||+.|+...|.+.....|.....
T Consensus 158 a~~gD~v~IDf~g~i--Dg~~fegg--~ae~~~l~lGs~-~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L------ 226 (441)
T COG0544 158 AENGDRVTIDFEGSV--DGEEFEGG--KAENFSLELGSG-RFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL------ 226 (441)
T ss_pred cccCCEEEEEEEEEE--cCeeccCc--cccCeEEEEcCC-CchhhHHhhhccCcCCCeeEEEEEcccccchhHh------
Confidence 889999999999966 47888775 345799999999 9999999999999999999987776666665443
Q ss_pred CCCCceEEEEEEeecccCc
Q 024876 147 SPMADLVYEVVLIGFDETK 165 (261)
Q Consensus 147 p~~~~l~~~iel~~v~~~~ 165 (261)
.|.+..|.|+|..|....
T Consensus 227 -aGK~a~F~V~vkeVk~~e 244 (441)
T COG0544 227 -AGKEATFKVKVKEVKKRE 244 (441)
T ss_pred -CCCceEEEEEEEEEeecC
Confidence 578899999999998876
No 25
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=7.6e-09 Score=85.79 Aligned_cols=65 Identities=28% Similarity=0.395 Sum_probs=57.8
Q ss_pred hhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (261)
Q Consensus 180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a 259 (261)
..+.++|+.||.+|..++|..|+.+|.+||..-. .-++-+.|+|+||+|+++|+.+..+|..|
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP-----------------~~~~Y~tnralchlk~~~~~~v~~dcrra 70 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINP-----------------TVASYYTNRALCHLKLKHWEPVEEDCRRA 70 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCC-----------------CcchhhhhHHHHHHHhhhhhhhhhhHHHH
Confidence 5678899999999999999999999999996532 23578999999999999999999999999
Q ss_pred cC
Q 024876 260 SK 261 (261)
Q Consensus 260 L~ 261 (261)
|+
T Consensus 71 lq 72 (284)
T KOG4642|consen 71 LQ 72 (284)
T ss_pred Hh
Confidence 74
No 26
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.66 E-value=3.4e-08 Score=67.04 Aligned_cols=63 Identities=29% Similarity=0.360 Sum_probs=54.8
Q ss_pred hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhh-CHHHHHHHHHhhc
Q 024876 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-RYEEAIGQCSLVS 260 (261)
Q Consensus 182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~-~~~~ai~~c~~aL 260 (261)
+......|+.+|..|+|..|+..|++|+.+... ...++.|+|.|+++++ +|.+|+.++.+||
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-----------------~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-----------------NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-----------------HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------------CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 455678999999999999999999999997432 1359999999999999 7999999999997
Q ss_pred C
Q 024876 261 K 261 (261)
Q Consensus 261 ~ 261 (261)
+
T Consensus 66 ~ 66 (69)
T PF13414_consen 66 K 66 (69)
T ss_dssp H
T ss_pred H
Confidence 3
No 27
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=3.1e-08 Score=87.93 Aligned_cols=71 Identities=24% Similarity=0.253 Sum_probs=60.6
Q ss_pred HhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHH
Q 024876 178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 257 (261)
Q Consensus 178 ~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~ 257 (261)
..+.....|+.||..||+|+|..|..+|..||.+-... ....+.||.|+|++.+++++..+||.+|+
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n-------------~~~naklY~nra~v~~rLgrl~eaisdc~ 311 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN-------------KKTNAKLYGNRALVNIRLGRLREAISDCN 311 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc-------------cchhHHHHHHhHhhhcccCCchhhhhhhh
Confidence 35677889999999999999999999999999863321 34457899999999999999999999999
Q ss_pred hhcC
Q 024876 258 LVSK 261 (261)
Q Consensus 258 ~aL~ 261 (261)
.||+
T Consensus 312 ~Al~ 315 (486)
T KOG0550|consen 312 EALK 315 (486)
T ss_pred hhhh
Confidence 9874
No 28
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.24 E-value=1.9e-06 Score=59.82 Aligned_cols=71 Identities=18% Similarity=0.156 Sum_probs=56.5
Q ss_pred hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
.+..+...|..++..|+|.+|+..|++|+.+.... .. -....+.++.|+|.|+..+|++++|+....+||
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~---------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQL-GD---------DHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-TT---------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-CC---------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34556778999999999999999999999984321 10 023347899999999999999999999999987
Q ss_pred C
Q 024876 261 K 261 (261)
Q Consensus 261 ~ 261 (261)
+
T Consensus 74 ~ 74 (78)
T PF13424_consen 74 D 74 (78)
T ss_dssp H
T ss_pred h
Confidence 3
No 29
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=3.1e-07 Score=80.23 Aligned_cols=87 Identities=20% Similarity=0.211 Sum_probs=72.7
Q ss_pred chhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchh--H-HHHHHHhhhhhhhHHHHHHHHhhCHH
Q 024876 174 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGK--Y-RDMALAVKNPCHLNMAACLLKLKRYE 250 (261)
Q Consensus 174 ~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~--~-~~~~~~l~~~~~~N~A~c~lKl~~~~ 250 (261)
+....+..+..+|+.||..|++++|..|..+|.++++++.. ++.+...+ + ...+..++..++.|+|+|-+|++.|.
T Consensus 214 ~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~-~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~ 292 (372)
T KOG0546|consen 214 DFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSE-QSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRG 292 (372)
T ss_pred ccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcc-cccccccccccccccccccccccccchHHhcccccCCC
Confidence 45667889999999999999999999999999999999985 22222122 1 34578899999999999999999999
Q ss_pred HHHHHHHhhcC
Q 024876 251 EAIGQCSLVSK 261 (261)
Q Consensus 251 ~ai~~c~~aL~ 261 (261)
.|+..|..+|+
T Consensus 293 ~a~~~~~~~~~ 303 (372)
T KOG0546|consen 293 GARFRTNEALR 303 (372)
T ss_pred cceeccccccc
Confidence 99999988764
No 30
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=8.4e-06 Score=74.75 Aligned_cols=62 Identities=26% Similarity=0.289 Sum_probs=54.4
Q ss_pred hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
+...|++||..|..|+|..|++.|..||.+-.. ...+|+|+++||.++++|.+|+.++++..
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~-----------------nhvlySnrsaa~a~~~~~~~al~da~k~~ 63 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPT-----------------NHVLYSNRSAAYASLGSYEKALKDATKTR 63 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCC-----------------ccchhcchHHHHHHHhhHHHHHHHHHHHH
Confidence 457899999999999999999999999986332 25799999999999999999999988764
No 31
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.93 E-value=1.5e-05 Score=71.90 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=43.8
Q ss_pred cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
..++..|+.+|..|+|..|+..|.+||.+-... ..+|+|+|.||+++++|.+|+.++.+||
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-----------------~~a~~~~a~~~~~~g~~~eAl~~~~~Al 63 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-----------------AELYADRAQANIKLGNFTEAVADANKAI 63 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 457788999999999999999999999864321 2355566666666666666666665554
No 32
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.85 E-value=4.3e-05 Score=51.31 Aligned_cols=52 Identities=29% Similarity=0.393 Sum_probs=43.7
Q ss_pred hhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 192 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 192 ~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
+++.|+|..|+..|++++.....+ ..++.++|.|++++|++++|...+.+++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~-----------------~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN-----------------PEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS-----------------HHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 478999999999999999875432 3577899999999999999999998775
No 33
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.80 E-value=4.6e-05 Score=50.82 Aligned_cols=57 Identities=21% Similarity=0.300 Sum_probs=48.7
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
..|..+++.|+|..|+..|+++++.... ...++.+++.|++.+|+|++|+....++|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~-----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD-----------------NPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT-----------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4688999999999999999999986422 24689999999999999999999998876
No 34
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.61 E-value=3.8e-05 Score=69.88 Aligned_cols=64 Identities=20% Similarity=0.227 Sum_probs=55.8
Q ss_pred hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
.+...|.++|.+|+.+.|..|+..|.|||++=.++ +..+.|+|+.++|.++|..|+.+|++|+
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnc-----------------a~~~anRa~a~lK~e~~~~Al~Da~kai 65 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNC-----------------AIYFANRALAHLKVESFGGALHDALKAI 65 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcc-----------------eeeechhhhhheeechhhhHHHHHHhhh
Confidence 46788999999999999999999999999864332 4678899999999999999999999987
Q ss_pred C
Q 024876 261 K 261 (261)
Q Consensus 261 ~ 261 (261)
+
T Consensus 66 e 66 (476)
T KOG0376|consen 66 E 66 (476)
T ss_pred h
Confidence 5
No 35
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=5.7e-05 Score=67.56 Aligned_cols=70 Identities=31% Similarity=0.467 Sum_probs=61.5
Q ss_pred chhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHH
Q 024876 174 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI 253 (261)
Q Consensus 174 ~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai 253 (261)
..++--..++..|++||.++++++|..|+..|..||+.+..+ +.-|.|+|+|++.+++|++|+
T Consensus 41 ~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~-----------------a~yy~nRAa~~m~~~~~~~a~ 103 (486)
T KOG0550|consen 41 FSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN-----------------ASYYSNRAATLMMLGRFEEAL 103 (486)
T ss_pred ccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc-----------------hhhhchhHHHHHHHHhHhhcc
Confidence 345667889999999999999999999999999999987532 578999999999999999999
Q ss_pred HHHHhhc
Q 024876 254 GQCSLVS 260 (261)
Q Consensus 254 ~~c~~aL 260 (261)
-++.+.+
T Consensus 104 ~dar~~~ 110 (486)
T KOG0550|consen 104 GDARQSV 110 (486)
T ss_pred cchhhhe
Confidence 9887654
No 36
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.56 E-value=0.00022 Score=48.52 Aligned_cols=56 Identities=30% Similarity=0.430 Sum_probs=48.4
Q ss_pred hHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 189 Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
.+-++++++|..|+..+.+++.+... ...++.++|.|+.++|+|.+|+..++.+|+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~-----------------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD-----------------DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc-----------------cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35678999999999999999987432 246899999999999999999999998873
No 37
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.56 E-value=0.00012 Score=66.81 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=55.7
Q ss_pred hhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (261)
Q Consensus 180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a 259 (261)
..+....+.|+.+|+.|+|..|+..|++||.+-... .....+|+|+|.||.++|++++|+.+..+|
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~--------------aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNP--------------DEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445666778999999999999999999999874321 001146899999999999999999999998
Q ss_pred cC
Q 024876 260 SK 261 (261)
Q Consensus 260 L~ 261 (261)
|+
T Consensus 139 Le 140 (453)
T PLN03098 139 LR 140 (453)
T ss_pred HH
Confidence 74
No 38
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.48 E-value=0.0003 Score=55.03 Aligned_cols=59 Identities=12% Similarity=0.026 Sum_probs=37.9
Q ss_pred chhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
...|..+.+.|+|..|+..|.+++.+-. -....++|++.|+.++|++++|+..+..||+
T Consensus 62 ~~lg~~~~~~g~~~~A~~~y~~Al~l~p-----------------~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 62 IALAGTWMMLKEYTTAINFYGHALMLDA-----------------SHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCC-----------------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444555555555555555554321 1235788999999999999999999888863
No 39
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.15 E-value=0.00044 Score=39.75 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=25.0
Q ss_pred hhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 234 PCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 234 ~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
.+++|++.||+.+++|.+|+.+|.+||+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4789999999999999999999999974
No 40
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.02 E-value=0.0018 Score=45.40 Aligned_cols=55 Identities=31% Similarity=0.414 Sum_probs=40.2
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a 259 (261)
..|.-+|+.|+|.+|+..+++ +..-. -...++.-+|.|++++++|++|+..-.+|
T Consensus 30 ~la~~~~~~~~y~~A~~~~~~-~~~~~-----------------~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 30 NLAQCYFQQGKYEEAIELLQK-LKLDP-----------------SNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHTTHHHHHHHHHHC-HTHHH-----------------CHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH-hCCCC-----------------CCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 368889999999999999988 43211 11245555699999999999999887654
No 41
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.96 E-value=0.0018 Score=51.67 Aligned_cols=69 Identities=17% Similarity=0.012 Sum_probs=55.9
Q ss_pred hhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 258 (261)
Q Consensus 179 ~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~ 258 (261)
...+...-..|..++..++|..|+..|++|+.+.... .....++.|+|.++.+++++++|+..+.+
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--------------~~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 97 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP--------------YDRSYILYNIGLIHTSNGEHTKALEYYFQ 97 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc--------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3456666777999999999999999999999874321 01234899999999999999999999999
Q ss_pred hcC
Q 024876 259 VSK 261 (261)
Q Consensus 259 aL~ 261 (261)
||.
T Consensus 98 Al~ 100 (168)
T CHL00033 98 ALE 100 (168)
T ss_pred HHH
Confidence 873
No 42
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.94 E-value=0.00015 Score=63.62 Aligned_cols=71 Identities=21% Similarity=0.333 Sum_probs=63.3
Q ss_pred chhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHH
Q 024876 174 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI 253 (261)
Q Consensus 174 ~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai 253 (261)
..++.+..++.+|-.+-+.|..|.+..|+..|.+||.+-.. ...+|.+++.+++||+.+..||
T Consensus 106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~-----------------~a~l~~kr~sv~lkl~kp~~ai 168 (377)
T KOG1308|consen 106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPP-----------------LAILYAKRASVFLKLKKPNAAI 168 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCc-----------------hhhhcccccceeeeccCCchhh
Confidence 36788999999999999999999999999999999976322 2468999999999999999999
Q ss_pred HHHHhhcC
Q 024876 254 GQCSLVSK 261 (261)
Q Consensus 254 ~~c~~aL~ 261 (261)
++|+.||+
T Consensus 169 rD~d~A~e 176 (377)
T KOG1308|consen 169 RDCDFAIE 176 (377)
T ss_pred hhhhhhhc
Confidence 99999874
No 43
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00076 Score=53.97 Aligned_cols=58 Identities=22% Similarity=0.352 Sum_probs=44.9
Q ss_pred EecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecccC
Q 024876 100 MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDET 164 (261)
Q Consensus 100 ~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~~~ 164 (261)
|++|.+ .+|+|.+.++.+|+.||++++.+||+++||..+.. .-..++|.+.++.+...
T Consensus 1 ~~~g~~-~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~------~~~~~~~~~~l~~~~~~ 58 (188)
T KOG0549|consen 1 FTLGQG-FVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG------DLNILVITILLVLLFRA 58 (188)
T ss_pred Ccccce-EEecCHHHHhhhhhccccceeccCCcccccccccc------cccceEEEeeeeehhhh
Confidence 467888 79999999999999999999999999999955431 12335666666655443
No 44
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.92 E-value=0.0024 Score=49.84 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=50.9
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
....|..++..|+|..|+..|++++.+-.. ....+.|+|.|+.++|+|.+|+..+.+||+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-----------------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-----------------SWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 335689999999999999999999975322 136889999999999999999999999873
No 45
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.91 E-value=0.002 Score=51.69 Aligned_cols=70 Identities=17% Similarity=0.105 Sum_probs=55.5
Q ss_pred HhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHH
Q 024876 178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 257 (261)
Q Consensus 178 ~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~ 257 (261)
+...+......|..++..|+|..|+..|++++....... ....++.|+|.|+.++|+|++|+....
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--------------~~~~~~~~la~~~~~~g~~~~A~~~~~ 96 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN--------------DRSYILYNMGIIYASNGEHDKALEYYH 96 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc--------------hHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344555677888999999999999999999998632210 023588999999999999999999998
Q ss_pred hhcC
Q 024876 258 LVSK 261 (261)
Q Consensus 258 ~aL~ 261 (261)
++|+
T Consensus 97 ~al~ 100 (172)
T PRK02603 97 QALE 100 (172)
T ss_pred HHHH
Confidence 8863
No 46
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.88 E-value=0.0015 Score=61.29 Aligned_cols=73 Identities=19% Similarity=0.129 Sum_probs=60.3
Q ss_pred hhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (261)
Q Consensus 180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a 259 (261)
..+..++..|+-+-..++|.+|+..|++|+.+....+... ..-....+.|||..|.+.|+|.+|..+|..|
T Consensus 239 ~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~---------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A 309 (508)
T KOG1840|consen 239 VVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED---------HPAVAATLNNLAVLYYKQGKFAEAEEYCERA 309 (508)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 3444556789999999999999999999999987654322 2345678999999999999999999999999
Q ss_pred cC
Q 024876 260 SK 261 (261)
Q Consensus 260 L~ 261 (261)
++
T Consensus 310 l~ 311 (508)
T KOG1840|consen 310 LE 311 (508)
T ss_pred HH
Confidence 74
No 47
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.76 E-value=0.0038 Score=47.77 Aligned_cols=69 Identities=19% Similarity=0.194 Sum_probs=59.8
Q ss_pred hhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHH
Q 024876 176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ 255 (261)
Q Consensus 176 ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~ 255 (261)
...++....+.-+|-.+-..|+...|+.+|.++|.++.. +.+.|+|+|.++--.++..+|+.+
T Consensus 37 ~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~-----------------raSayNNRAQa~RLq~~~e~ALdD 99 (175)
T KOG4555|consen 37 TQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPE-----------------RASAYNNRAQALRLQGDDEEALDD 99 (175)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccc-----------------chHhhccHHHHHHHcCChHHHHHH
Confidence 345677777888888899999999999999999988643 358999999999999999999999
Q ss_pred HHhhcC
Q 024876 256 CSLVSK 261 (261)
Q Consensus 256 c~~aL~ 261 (261)
.++||+
T Consensus 100 Ln~Ale 105 (175)
T KOG4555|consen 100 LNKALE 105 (175)
T ss_pred HHHHHH
Confidence 999874
No 48
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.72 E-value=0.0037 Score=47.54 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=18.5
Q ss_pred hhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 234 PCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 234 ~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
..+.|+|.|++.+|+++.|+.....++
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 86 RPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456677777777777777777666654
No 49
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.70 E-value=0.0051 Score=41.86 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=16.8
Q ss_pred hhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 234 PCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 234 ~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
.++.+++.+++.++++..|...+..++
T Consensus 69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 69 KAYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 355566666666666666666665554
No 50
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.68 E-value=0.00052 Score=62.37 Aligned_cols=63 Identities=19% Similarity=0.307 Sum_probs=53.7
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a 259 (261)
.-..||-+|++.+|..|++.|+-||..+... -+.+++++++|+...+++.|+|+.||...+..
T Consensus 240 kmnigni~~kkr~fskaikfyrmaldqvpsi------------nk~~rikil~nigvtfiq~gqy~dainsfdh~ 302 (840)
T KOG2003|consen 240 KMNIGNIHFKKREFSKAIKFYRMALDQVPSI------------NKDMRIKILNNIGVTFIQAGQYDDAINSFDHC 302 (840)
T ss_pred eeeecceeeehhhHHHHHHHHHHHHhhcccc------------chhhHHHHHhhcCeeEEecccchhhHhhHHHH
Confidence 4467999999999999999999999876542 15788999999999999999999999865543
No 51
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.63 E-value=0.0044 Score=48.95 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=35.8
Q ss_pred cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (261)
Q Consensus 183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a 259 (261)
..+-..|..+|..|+|..|.+.|+-.+.+-... ..-+.|+++|+..+|+|.+||.....|
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~-----------------~~y~~gLG~~~Q~~g~~~~AI~aY~~A 95 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS-----------------FDYWFRLGECCQAQKHWGEAIYAYGRA 95 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----------------HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 445667788888888888888887776552221 234455555555555555555444443
No 52
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.60 E-value=0.0045 Score=55.83 Aligned_cols=61 Identities=18% Similarity=0.103 Sum_probs=51.9
Q ss_pred ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
.+-.+|..+++.|+|..|+..|.+|+.+-.. ...+|++++.+++++|+|.+|+..+.++|+
T Consensus 38 a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-----------------~~~a~~~lg~~~~~lg~~~eA~~~~~~al~ 98 (356)
T PLN03088 38 LYADRAQANIKLGNFTEAVADANKAIELDPS-----------------LAKAYLRKGTACMKLEEYQTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-----------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3456788899999999999999999986432 135799999999999999999999998873
No 53
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.59 E-value=0.0048 Score=43.22 Aligned_cols=49 Identities=24% Similarity=0.405 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876 195 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 258 (261)
Q Consensus 195 ~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~ 258 (261)
+++|..|+..|.+++..-... . ....++++|.|++++++|.+|+..+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~--------------~-~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTN--------------P-NSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGT--------------H-HHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHCCCC--------------h-hHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 589999999999999864321 0 235788899999999999999998865
No 54
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.58 E-value=0.0048 Score=48.73 Aligned_cols=55 Identities=22% Similarity=0.172 Sum_probs=42.2
Q ss_pred hHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 189 Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
|--+=..|+|..|+..|.+|+.+-.++ ...+.|++.|++++|+...|+.....||
T Consensus 76 G~~~Q~~g~~~~AI~aY~~A~~L~~dd-----------------p~~~~~ag~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 76 GECCQAQKHWGEAIYAYGRAAQIKIDA-----------------PQAPWAAAECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCC-----------------chHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333335789999999999999764322 2589999999999999888777666654
No 55
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.58 E-value=0.0056 Score=45.05 Aligned_cols=75 Identities=15% Similarity=0.096 Sum_probs=40.2
Q ss_pred chhhHHhhhhhhHHHHHHHHHHHHHhhcccccc--------------ccchhHHHHHHH---------hhhhhhhHHHHH
Q 024876 186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF--------------QLFGKYRDMALA---------VKNPCHLNMAAC 242 (261)
Q Consensus 186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~--------------~~~~~~~~~~~~---------l~~~~~~N~A~c 242 (261)
-..|..+++.|+|..|+..|.+++......... +..+.-...++. ....++.+++.|
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 355677777777777877777777643221000 000000001111 112346677777
Q ss_pred HHHhhCHHHHHHHHHhhc
Q 024876 243 LLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 243 ~lKl~~~~~ai~~c~~aL 260 (261)
+.+++++.+|+...++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHhCChHHHHHHHHHHH
Confidence 777777777777766654
No 56
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.51 E-value=0.008 Score=45.69 Aligned_cols=61 Identities=28% Similarity=0.455 Sum_probs=51.5
Q ss_pred cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
..+...|..+++.|+|..|+..|++++..... ....+.|+|.|++++++|.+|+..+.+++
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-----------------NSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667889999999999999999999876322 13688899999999999999999988875
No 57
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.34 E-value=0.0086 Score=52.15 Aligned_cols=70 Identities=26% Similarity=0.252 Sum_probs=53.3
Q ss_pred hhhcccchhhHHhhhh-hhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876 180 GAADRRKMDGNALFKE-EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 258 (261)
Q Consensus 180 ~~a~~~K~~Gn~~fk~-~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~ 258 (261)
..+..++..|.-+.+. +++..|+..|++|+.++.... .......|+.++|.++.++++|.+|+....+
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-----------~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-----------SPHSAAECLLKAADLYARLGRYEEAIEIYEE 180 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-----------ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4556677778877788 899999999999999986421 1234567999999999999999999998877
Q ss_pred hc
Q 024876 259 VS 260 (261)
Q Consensus 259 aL 260 (261)
+.
T Consensus 181 ~~ 182 (282)
T PF14938_consen 181 VA 182 (282)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 58
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.33 E-value=0.0051 Score=57.03 Aligned_cols=70 Identities=26% Similarity=0.245 Sum_probs=59.2
Q ss_pred hhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhh---CHHH
Q 024876 175 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK---RYEE 251 (261)
Q Consensus 175 ~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~---~~~~ 251 (261)
.-+..+.++..|+.||..|-.+....|+..|.+++.+.. ..+.||.|+|++++|.+ +...
T Consensus 367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~-----------------~~~~~l~nraa~lmkRkW~~d~~~ 429 (758)
T KOG1310|consen 367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVP-----------------DAIYLLENRAAALMKRKWRGDSYL 429 (758)
T ss_pred hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhcc-----------------chhHHHHhHHHHHHhhhccccHHH
Confidence 356678889999999999999999999999999998753 34578999999999965 6778
Q ss_pred HHHHHHhhcC
Q 024876 252 AIGQCSLVSK 261 (261)
Q Consensus 252 ai~~c~~aL~ 261 (261)
|+.+|..||+
T Consensus 430 AlrDch~Alr 439 (758)
T KOG1310|consen 430 ALRDCHVALR 439 (758)
T ss_pred HHHhHHhhcc
Confidence 8899988874
No 59
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.33 E-value=0.0089 Score=43.94 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=24.6
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhhc
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMG 213 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~ 213 (261)
....|..+++.++|..|+..|++++....
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 70 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKYP 70 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence 34478899999999999999999997643
No 60
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.01 Score=56.21 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=55.3
Q ss_pred hhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (261)
Q Consensus 180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a 259 (261)
-.-.-+...+..+|+.++|..|++.|...++++..+ .+ ...-.++.-|++.||+++.+.+.|+....+|
T Consensus 352 ~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D-------~~----~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EA 420 (872)
T KOG4814|consen 352 CIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD-------NY----SDRFAKIQRALQVCYLKLEQLDNAVEVYQEA 420 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccch-------hh----hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344456778899999999999999999999987643 11 1222688999999999999999999887765
No 61
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.10 E-value=0.0079 Score=35.11 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 235 CHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 235 ~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
+++|+|.+|.++|+|++|+..+.++|
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47899999999999999999999976
No 62
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.06 E-value=0.014 Score=51.11 Aligned_cols=28 Identities=29% Similarity=0.120 Sum_probs=23.9
Q ss_pred hhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 233 NPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 233 ~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
...++|++.++..+|+|++|+..+.++|
T Consensus 132 ~~a~~~lg~~l~~~g~~~eA~~~~~~al 159 (296)
T PRK11189 132 NYAYLNRGIALYYGGRYELAQDDLLAFY 159 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3578899999999999999999988876
No 63
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.00 E-value=0.011 Score=56.07 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=26.1
Q ss_pred hhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 232 KNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 232 ~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
....++|+|..|-.+|++++|+.+..+||.
T Consensus 387 ~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 387 FAAAHNNLASIYKQQGNLDDAIMCYKEALR 416 (966)
T ss_pred hhhhhhhHHHHHHhcccHHHHHHHHHHHHh
Confidence 356789999999999999999999998874
No 64
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.00 E-value=0.028 Score=38.05 Aligned_cols=59 Identities=31% Similarity=0.379 Sum_probs=49.4
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
+...|..++..|+|..|+..|.+++...... ..++.+++.|+..+++++.|+..+..++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDN-----------------ADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888999999999999999999864321 1578899999999999999999998875
No 65
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.98 E-value=0.013 Score=49.06 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=54.2
Q ss_pred hhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (261)
Q Consensus 180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a 259 (261)
..+..+...|..+++.|+|..|+..|++++...... ......++++|.|++++++|.+|+..+.++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~--------------~~~~~a~~~la~~~~~~~~~~~A~~~~~~~ 96 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS--------------PYAEQAQLDLAYAYYKSGDYAEAIAAADRF 96 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--------------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 334466788899999999999999999999865421 112346889999999999999999999987
Q ss_pred c
Q 024876 260 S 260 (261)
Q Consensus 260 L 260 (261)
+
T Consensus 97 l 97 (235)
T TIGR03302 97 I 97 (235)
T ss_pred H
Confidence 6
No 66
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.95 E-value=0.012 Score=33.39 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=24.4
Q ss_pred hhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 234 PCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 234 ~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
..+.++|.|++++++|++|+..+.++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999873
No 67
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=0.012 Score=51.20 Aligned_cols=64 Identities=25% Similarity=0.323 Sum_probs=53.9
Q ss_pred hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
.+..+.+.|--+||.|+|..|.++|+.|+..-.+. ..+-.|+|+|+...++|..|+++.++.+
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-----------------pllAYniALaHy~~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-----------------PLLAYNLALAHYSSRQYASALKHISEII 205 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCC-----------------chhHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34456778889999999999999999999875442 3577899999999999999999998875
Q ss_pred C
Q 024876 261 K 261 (261)
Q Consensus 261 ~ 261 (261)
+
T Consensus 206 e 206 (459)
T KOG4340|consen 206 E 206 (459)
T ss_pred H
Confidence 3
No 68
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.89 E-value=0.021 Score=48.68 Aligned_cols=62 Identities=10% Similarity=-0.001 Sum_probs=51.2
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
.-..|..+|++|+|..|+..|++.+...... .+.....+++|.+|+++++|.+|+....+.+
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s--------------~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi 96 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFG--------------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFI 96 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5567788999999999999999999865432 2233567899999999999999999998876
No 69
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=95.68 E-value=0.037 Score=42.98 Aligned_cols=59 Identities=25% Similarity=0.309 Sum_probs=46.4
Q ss_pred chhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876 186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 258 (261)
Q Consensus 186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~ 258 (261)
-..|+.+|..|+|..|...|+.++..-.. ..++..+.+++|.|++.+++|++|+.....
T Consensus 52 l~lA~~~~~~g~~~~A~~~l~~~~~~~~d--------------~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 52 LQLAKAAYEQGDYDEAKAALEKALANAPD--------------PELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCC--------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34678889999999999999999974311 244556788899999999999999887654
No 70
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.62 E-value=0.032 Score=46.11 Aligned_cols=64 Identities=20% Similarity=0.219 Sum_probs=49.7
Q ss_pred cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
..+-..|..+|..|+|..|+..|++.+...... .+.....+.+|.++.+.++|..|+..+...|
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s--------------~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi 69 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNS--------------PYAPQAQLMLAYAYYKQGDYEEAIAAYERFI 69 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS--------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445677899999999999999999999876542 2223577899999999999999999887654
No 71
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.59 E-value=0.087 Score=39.67 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=51.3
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
..|...+..|-|..|...|++|+..-....+.+-.+. ..+-.-||--|+.++.+|++|++|+..+..+|
T Consensus 14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh-----~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL 82 (144)
T PF12968_consen 14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDH-----DGFDAFCHAGLSGALAGLGRYDECLQSADRAL 82 (144)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---H-----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhccc-----ccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4567778899999999999999987654332221121 34556799999999999999999999999887
No 72
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.57 E-value=0.018 Score=34.15 Aligned_cols=28 Identities=25% Similarity=0.192 Sum_probs=24.7
Q ss_pred hhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 233 NPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 233 ~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
+.+++|+|.+|..+|+|.+|+..+.+++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3689999999999999999999999886
No 73
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.51 E-value=0.0081 Score=57.96 Aligned_cols=75 Identities=32% Similarity=0.479 Sum_probs=63.1
Q ss_pred CchhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhh--CHH
Q 024876 173 MTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK--RYE 250 (261)
Q Consensus 173 l~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~--~~~ 250 (261)
.+...-+..+...+++||.+|.++.|..|.-.|..++.++..+ .-....+++|++.|++.++ +|.
T Consensus 44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~-------------~~~~a~~~~~~~s~~m~~~l~~~~ 110 (748)
T KOG4151|consen 44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKD-------------HHVVATLRSNQASCYMQLGLGEYP 110 (748)
T ss_pred cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheecccc-------------chhhhhHHHHHHHHHhhcCccchh
Confidence 3456678889999999999999999999999999999987643 2334689999999998755 899
Q ss_pred HHHHHHHhhc
Q 024876 251 EAIGQCSLVS 260 (261)
Q Consensus 251 ~ai~~c~~aL 260 (261)
.++..|+-|+
T Consensus 111 ~~~~E~~la~ 120 (748)
T KOG4151|consen 111 KAIPECELAL 120 (748)
T ss_pred hhcCchhhhh
Confidence 9999998876
No 74
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=95.50 E-value=0.026 Score=54.50 Aligned_cols=25 Identities=8% Similarity=0.161 Sum_probs=13.9
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHh
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAY 211 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~ 211 (261)
..|..++..|+|..|+..|.+++..
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~ 394 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKL 394 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4455555555555555555555544
No 75
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=95.46 E-value=0.032 Score=50.57 Aligned_cols=81 Identities=12% Similarity=0.250 Sum_probs=56.8
Q ss_pred hhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhcccccccc-chhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHH
Q 024876 176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-FGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIG 254 (261)
Q Consensus 176 ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~-~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~ 254 (261)
++.++.| -..+-.+|++++|..|+-+|+-||.++......+. .......+..+..-+..-++.|||++++.+.|+.
T Consensus 173 Dkwl~vA---L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALn 249 (569)
T PF15015_consen 173 DKWLQVA---LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALN 249 (569)
T ss_pred HHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHH
Confidence 3444444 34677889999999999999999999865422111 1222334555556677788999999999998888
Q ss_pred HHHhh
Q 024876 255 QCSLV 259 (261)
Q Consensus 255 ~c~~a 259 (261)
+.-+.
T Consensus 250 h~hrs 254 (569)
T PF15015_consen 250 HSHRS 254 (569)
T ss_pred HHhhh
Confidence 76554
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.45 E-value=0.035 Score=48.66 Aligned_cols=61 Identities=13% Similarity=0.005 Sum_probs=52.0
Q ss_pred ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
-.-..|..+...|++..|+..|++++.+-... ...++|++.++..+++|++|+...++||+
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~-----------------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 126 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDM-----------------ADAYNYLGIYLTQAGNFDAAYEAFDSVLE 126 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35577888999999999999999999863321 36899999999999999999999999874
No 77
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.41 E-value=0.018 Score=33.20 Aligned_cols=33 Identities=33% Similarity=0.362 Sum_probs=26.7
Q ss_pred HHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHH
Q 024876 204 QYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI 253 (261)
Q Consensus 204 ~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai 253 (261)
+|+|||++-.. ....|+|+|.++...|++++|+
T Consensus 1 ~y~kAie~~P~-----------------n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPN-----------------NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCC-----------------CHHHHHHHHHHHHHCcCHHhhc
Confidence 37888876432 2469999999999999999986
No 78
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=95.19 E-value=0.055 Score=43.91 Aligned_cols=75 Identities=12% Similarity=0.001 Sum_probs=42.0
Q ss_pred chhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchhHHHHHH--------HhhhhhhhHHHHHHHHh
Q 024876 186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGKYRDMAL--------AVKNPCHLNMAACLLKL 246 (261)
Q Consensus 186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~~~~~~~--------~l~~~~~~N~A~c~lKl 246 (261)
...|.-++..|++..|+..|++++........ ....++-...+. ......+.|++.|+.++
T Consensus 69 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (234)
T TIGR02521 69 LALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA 148 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc
Confidence 34566667777777777777777765432100 000000000000 11223567788888888
Q ss_pred hCHHHHHHHHHhhc
Q 024876 247 KRYEEAIGQCSLVS 260 (261)
Q Consensus 247 ~~~~~ai~~c~~aL 260 (261)
+++.+|+..+.+++
T Consensus 149 g~~~~A~~~~~~~~ 162 (234)
T TIGR02521 149 GDFDKAEKYLTRAL 162 (234)
T ss_pred CCHHHHHHHHHHHH
Confidence 88888888877765
No 79
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.11 E-value=0.041 Score=47.47 Aligned_cols=62 Identities=8% Similarity=0.048 Sum_probs=46.4
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
.--.|.-+|..|+|..|+..|++++...... ......+.+++.|+.++|+++.|+..+.+++
T Consensus 183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s--------------~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPKS--------------PKAADAMFKVGVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--------------cchhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455777788888888888888888765432 1123467788999999999999999888775
No 80
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.97 E-value=0.037 Score=29.62 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=25.0
Q ss_pred hhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 234 PCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 234 ~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
.++.++|.|++.++++..|+....++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4688999999999999999999988863
No 81
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=94.87 E-value=0.067 Score=43.42 Aligned_cols=79 Identities=22% Similarity=0.204 Sum_probs=50.1
Q ss_pred hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchhHHH---HH---HHhhhhhhhHHHHHHH
Q 024876 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGKYRD---MA---LAVKNPCHLNMAACLL 244 (261)
Q Consensus 182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~~~~---~~---~~l~~~~~~N~A~c~l 244 (261)
+......|..++..|+|..|+..|.+++........ .+..++-.+ +. ..-....+.|++.+++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 445556789999999999999999999876432100 000000000 01 1112245678888888
Q ss_pred HhhCHHHHHHHHHhhc
Q 024876 245 KLKRYEEAIGQCSLVS 260 (261)
Q Consensus 245 Kl~~~~~ai~~c~~aL 260 (261)
.+|+|++|+..+.+++
T Consensus 111 ~~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAI 126 (234)
T ss_pred HcccHHHHHHHHHHHH
Confidence 8888888888887765
No 82
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.78 E-value=0.035 Score=31.31 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=23.8
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhh
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYM 212 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l 212 (261)
....|..+|+.|+|..|+..|++++.+.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 3467899999999999999999999874
No 83
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=94.65 E-value=0.079 Score=43.65 Aligned_cols=78 Identities=15% Similarity=0.167 Sum_probs=55.5
Q ss_pred ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc----------c--cc--chhHHH------HHHHhhhhhhhHHHHHH
Q 024876 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM----------F--QL--FGKYRD------MALAVKNPCHLNMAACL 243 (261)
Q Consensus 184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~----------~--~~--~~~~~~------~~~~l~~~~~~N~A~c~ 243 (261)
.....|.-+...|+|..|+..|.+|+++-..+.. . +. .++-.. +...-....++|+|.++
T Consensus 75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~ 154 (198)
T PRK10370 75 QWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDA 154 (198)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 3556688888999999999999999987643210 0 00 011111 12233456899999999
Q ss_pred HHhhCHHHHHHHHHhhcC
Q 024876 244 LKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 244 lKl~~~~~ai~~c~~aL~ 261 (261)
+++|+|++|+..+.++|+
T Consensus 155 ~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 155 FMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHcCCHHHHHHHHHHHHh
Confidence 999999999999999874
No 84
>PRK12370 invasion protein regulator; Provisional
Probab=94.62 E-value=0.072 Score=50.89 Aligned_cols=56 Identities=13% Similarity=-0.051 Sum_probs=36.4
Q ss_pred hHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 189 Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
|.-++..|+|..|+..|++|+.+-.. ....+++++.+++.+|++++|+..+.++|+
T Consensus 345 g~~~~~~g~~~~A~~~~~~Al~l~P~-----------------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~ 400 (553)
T PRK12370 345 GLINTIHSEYIVGSLLFKQANLLSPI-----------------SADIKYYYGWNLFMAGQLEEALQTINECLK 400 (553)
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44445555555566666655554221 124678888888888888888888887763
No 85
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.60 E-value=0.049 Score=37.23 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=26.2
Q ss_pred hhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 232 KNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 232 ~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
...+++|+|.||..+++|++|+..+.+||+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~ 33 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALD 33 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999873
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=94.58 E-value=0.078 Score=49.91 Aligned_cols=71 Identities=20% Similarity=0.053 Sum_probs=56.3
Q ss_pred hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
.+..+.+.+..+-..++|..|...|+++++++.+.+... +......+.|+|.+|+++|+|.+|.....+||
T Consensus 324 v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~---------~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 324 VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED---------NVNLAKIYANLAELYLKMGKYKEAEELYKKAI 394 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc---------chHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 444566667777889999999999999999987332211 23456789999999999999999999888876
No 87
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.49 E-value=0.032 Score=52.20 Aligned_cols=73 Identities=15% Similarity=0.193 Sum_probs=52.0
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHHhhccccc-c-----cc--chhHHH---------HHHHhhhhhhhHHHHHHHHhhCHH
Q 024876 188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFM-F-----QL--FGKYRD---------MALAVKNPCHLNMAACLLKLKRYE 250 (261)
Q Consensus 188 ~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-~-----~~--~~~~~~---------~~~~l~~~~~~N~A~c~lKl~~~~ 250 (261)
.|--++-.++|.+|+.+|+.||..-..+.. . .+ .+...+ ++..-.+-..+||+.|++.+|.|+
T Consensus 436 LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~yk 515 (579)
T KOG1125|consen 436 LGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYK 515 (579)
T ss_pred hHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHH
Confidence 588889999999999999999976443210 0 00 001111 122333456889999999999999
Q ss_pred HHHHHHHhhc
Q 024876 251 EAIGQCSLVS 260 (261)
Q Consensus 251 ~ai~~c~~aL 260 (261)
+|+.+.-.||
T Consensus 516 EA~~hlL~AL 525 (579)
T KOG1125|consen 516 EAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHH
Confidence 9999998887
No 88
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.46 E-value=0.04 Score=35.30 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 235 CHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 235 ~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
|+..+|..+.|+++|..|...|+.+|+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 677899999999999999999999874
No 89
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.38 E-value=0.045 Score=31.84 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.2
Q ss_pred chhhHHhhhhhhHHHHHHHHHHHHHh
Q 024876 186 KMDGNALFKEEKLEEAMQQYEMAIAY 211 (261)
Q Consensus 186 K~~Gn~~fk~~~~~~A~~~Y~kal~~ 211 (261)
...|+-+++.|+|.+|+..|+++|.+
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45789999999999999999998855
No 90
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.33 E-value=0.034 Score=31.07 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 235 CHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 235 ~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
+++++|.|+.++|++++|+....+++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 57899999999999999999988775
No 91
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.32 E-value=0.15 Score=36.61 Aligned_cols=62 Identities=16% Similarity=0.138 Sum_probs=46.2
Q ss_pred hhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 192 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 192 ~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
..+.++|..|+....+..++........ . .......++|+|.++..+|++++|+..+.+|++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~---~-----~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSS---S-----NSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccch---h-----hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3578999999999999888764321100 0 122344689999999999999999999999863
No 92
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.32 E-value=0.17 Score=40.96 Aligned_cols=63 Identities=17% Similarity=0.091 Sum_probs=51.5
Q ss_pred cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (261)
Q Consensus 183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a 259 (261)
..+.+.|+.+++.|++..|++.|.++..++.. ...++.+++|+..+.+-+++|..+..+.++|
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~--------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTS--------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC--------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44667899999999999999999999987643 2445678888888888888998888877765
No 93
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.31 E-value=0.047 Score=30.96 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=23.9
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhh
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYM 212 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l 212 (261)
.-..|..++..++|..|+..|++|+++-
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 4467999999999999999999999863
No 94
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.22 E-value=0.15 Score=40.43 Aligned_cols=67 Identities=12% Similarity=-0.142 Sum_probs=48.1
Q ss_pred ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
.....|.-++..|++..|+..|.+|+..-... .........++.|++..++++|++..|+..+.+++
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~----------~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALERNPFL----------PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----------HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 45667888899999999999999999763211 01122334556666666669999999988888764
No 95
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=94.19 E-value=0.1 Score=53.21 Aligned_cols=78 Identities=10% Similarity=0.024 Sum_probs=51.8
Q ss_pred ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchhHHH------HHHHhhhhhhhHHHHHHHHh
Q 024876 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGKYRD------MALAVKNPCHLNMAACLLKL 246 (261)
Q Consensus 184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~~~~------~~~~l~~~~~~N~A~c~lKl 246 (261)
.....|..+.+.|++..|+..|++++..-..... ....++-.. ++..-...++.|+|.|+.++
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~l 690 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRL 690 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3556788888888888888888888876533210 000011000 11122345689999999999
Q ss_pred hCHHHHHHHHHhhcC
Q 024876 247 KRYEEAIGQCSLVSK 261 (261)
Q Consensus 247 ~~~~~ai~~c~~aL~ 261 (261)
|++++|+..+.+||+
T Consensus 691 Gd~~eA~~~l~~Al~ 705 (987)
T PRK09782 691 DDMAATQHYARLVID 705 (987)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998864
No 96
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=94.08 E-value=0.12 Score=43.14 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=47.5
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 258 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~ 258 (261)
..|..+|++|+|..|+..|++++...... ......+.+++.++.++|++.+|+.....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~--------------~~~~~a~~~l~~~~~~lg~~~~A~~~~~~ 228 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDT--------------PATEEALARLVEAYLKLGLKDLAQDAAAV 228 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCC--------------cchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56788899999999999999999876532 12246888999999999999999986544
No 97
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.08 E-value=0.066 Score=50.14 Aligned_cols=67 Identities=21% Similarity=0.235 Sum_probs=51.1
Q ss_pred ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
.+++.|...|+.+.|..|...+++++..+..... + . ....+..+|++..+-|++.|.+||...++||
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~-----e---~--~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN-----E---K--IFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc-----c---c--cchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 4678888889999999999999999854432110 0 0 0345788999999999999999999988887
No 98
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.05 E-value=0.092 Score=44.06 Aligned_cols=65 Identities=26% Similarity=0.252 Sum_probs=51.7
Q ss_pred hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
+..+.+-|.-+..+|+|..|...|.+|+.-=.+. .....+-|+..|.+|.|+++.|..+..++|+
T Consensus 103 GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~---------------~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 103 GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYG---------------EPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCC---------------CcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 3446677888889999999999999999642221 1135788999999999999999999998874
No 99
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=93.97 E-value=0.11 Score=44.24 Aligned_cols=59 Identities=19% Similarity=0.203 Sum_probs=41.0
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
++..|..+|..|+|..|+..++++...-..++ ..++=+++||.++|+++.|.....++|
T Consensus 103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~-----------------~~~~~lgaaldq~Gr~~~Ar~ay~qAl 161 (257)
T COG5010 103 LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW-----------------EAWNLLGAALDQLGRFDEARRAYRQAL 161 (257)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhccCCCCh-----------------hhhhHHHHHHHHccChhHHHHHHHHHH
Confidence 34489999999999999999999998654332 244555555666666555555555554
No 100
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.70 E-value=0.084 Score=29.77 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=25.0
Q ss_pred hhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 234 PCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 234 ~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
.++.+++.|+.+++++++|+....++++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999988863
No 101
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=93.58 E-value=0.21 Score=39.83 Aligned_cols=49 Identities=14% Similarity=0.042 Sum_probs=38.1
Q ss_pred cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhC
Q 024876 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248 (261)
Q Consensus 183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~ 248 (261)
......|..+++.|+|..|+..|.+++...... ...+.+++.|+..+++
T Consensus 73 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 73 YILYNMGIIYASNGEHDKALEYYHQALELNPKQ-----------------PSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-----------------HHHHHHHHHHHHHcCC
Confidence 345677899999999999999999999864321 2456788888888776
No 102
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.56 E-value=0.32 Score=33.75 Aligned_cols=64 Identities=14% Similarity=0.233 Sum_probs=50.0
Q ss_pred hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 258 (261)
Q Consensus 181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~ 258 (261)
.+...-++|-.+|.+.+...|++++++++.-.... ..+-.++.=++.+|.-.|+|.+++..+..
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~--------------~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDR--------------EDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCCh--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556688999999999999999999999865431 12345666678889999999999987654
No 103
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=93.53 E-value=0.073 Score=47.25 Aligned_cols=82 Identities=16% Similarity=0.200 Sum_probs=55.1
Q ss_pred hhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccch---hHHHHHHHh---hhhhhhHHHHH
Q 024876 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFG---KYRDMALAV---KNPCHLNMAAC 242 (261)
Q Consensus 180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~---~~~~~~~~l---~~~~~~N~A~c 242 (261)
..+.+.-+.|+.+|.++.|..|+..|-.|+..-...+. ...+. .+...+.++ -.....-++.+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 34566778999999999999999999888865322110 00000 011222222 23456778889
Q ss_pred HHHhhCHHHHHHHHHhhcC
Q 024876 243 LLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 243 ~lKl~~~~~ai~~c~~aL~ 261 (261)
+||+|++++|..+.+.||+
T Consensus 116 llK~Gele~A~~DF~~vl~ 134 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQ 134 (504)
T ss_pred hhhcccHHHHHHHHHHHHh
Confidence 9999999999999988874
No 104
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=93.44 E-value=0.16 Score=46.47 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=46.2
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 258 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~ 258 (261)
+-.++.-+.++++|+.|+...++|+.+.... ..++..||.||+++|+|+.|+...+.
T Consensus 237 L~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~-----------------f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 237 LNLQAEFLLSKKKYELALEIAKKAVELSPSE-----------------FETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCchh-----------------HHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 4446777788899999999999998875432 35888999999999999999987764
No 105
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.38 E-value=0.08 Score=50.40 Aligned_cols=65 Identities=22% Similarity=0.149 Sum_probs=53.3
Q ss_pred hhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (261)
Q Consensus 180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a 259 (261)
+-++..-..||.+=.+|++.+|+..|+.++++-. -.+-.|.|+|+|+...++...|...|.+|
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p-----------------~fida~inla~al~~~~~~~~a~~~~~~a 176 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELKP-----------------KFIDAYINLAAALVTQGDLELAVQCFFEA 176 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCc-----------------hhhHHHhhHHHHHHhcCCCcccHHHHHHH
Confidence 3445566678888889999999999999997622 23468999999999999999999999988
Q ss_pred cC
Q 024876 260 SK 261 (261)
Q Consensus 260 L~ 261 (261)
|.
T Consensus 177 lq 178 (966)
T KOG4626|consen 177 LQ 178 (966)
T ss_pred Hh
Confidence 73
No 106
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=93.29 E-value=0.3 Score=36.88 Aligned_cols=60 Identities=27% Similarity=0.205 Sum_probs=42.0
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
+.+..+-..|+..+|+..|++++..--. + ..+..++.+++.++..+|++++|+..-++++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~-------~-------~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLS-------G-------ADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC-------c-------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556667789999999999999974211 1 1223467778888888888888877666543
No 107
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.25 E-value=0.63 Score=35.83 Aligned_cols=73 Identities=23% Similarity=0.227 Sum_probs=55.0
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHHhhcccccc-----ccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMF-----QLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 188 ~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~-----~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
.|...-..++...++..|.+++.+..-.+.. ......+..++...+.++..++..++..++|..|+..|..+|
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3445556678889999999999887544322 223456778999999999999999999999999999999876
No 108
>PRK15331 chaperone protein SicA; Provisional
Probab=93.15 E-value=0.21 Score=39.77 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=40.6
Q ss_pred hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 258 (261)
Q Consensus 182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~ 258 (261)
...+-..|-.+|.+|+|..|...|+-...+ +.. ...-++.||+|+.-+++|++|+.....
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~-d~~----------------n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~ 96 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIY-DFY----------------NPDYTMGLAAVCQLKKQFQKACDLYAV 96 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcC----------------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788899999999999999766543 221 012456777777777777777765443
No 109
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.15 E-value=0.15 Score=44.21 Aligned_cols=85 Identities=15% Similarity=0.084 Sum_probs=65.9
Q ss_pred CCchhhHhhhhcccchhhHHhhhhh-hHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHH
Q 024876 172 DMTVEERIGAADRRKMDGNALFKEE-KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYE 250 (261)
Q Consensus 172 ~l~~ee~~~~a~~~K~~Gn~~fk~~-~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~ 250 (261)
.++++.....+..+-+.|..+++++ +|..|....++|+++++.. ...+.......+++..++.-+|.||+..+.++
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~---~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~ 101 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKP---GKMDKLSPDGSELRLSILRLLANAYLEWDTYE 101 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhh---hhccccCCcHHHHHHHHHHHHHHHHHcCCChH
Confidence 4567777888999999999999999 9999999999999998642 00112223457889999999999999999876
Q ss_pred HHHHHHHhhc
Q 024876 251 EAIGQCSLVS 260 (261)
Q Consensus 251 ~ai~~c~~aL 260 (261)
.... |..+|
T Consensus 102 ~~~k-a~~~l 110 (278)
T PF08631_consen 102 SVEK-ALNAL 110 (278)
T ss_pred HHHH-HHHHH
Confidence 5544 55543
No 110
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.94 E-value=0.22 Score=46.74 Aligned_cols=60 Identities=23% Similarity=0.224 Sum_probs=51.3
Q ss_pred ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
-.-..|-.+=|.++|..|+..|++||.....+ ...|.-+|.||..+|+++.|+.+..+||
T Consensus 457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~-----------------~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 457 TLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD-----------------ASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc-----------------hhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 34566777789999999999999999875432 3688899999999999999999999987
No 111
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=92.71 E-value=0.19 Score=49.40 Aligned_cols=61 Identities=15% Similarity=0.154 Sum_probs=43.8
Q ss_pred cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
......|+.++++|+|..|+..|++++..-... ..++..++.+++++|+|++|+....+++
T Consensus 23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 83 (899)
T TIGR02917 23 ESLIEAAKSYLQKNKYKAAIIQLKNALQKDPND-----------------AEARFLLGKIYLALGDYAAAEKELRKAL 83 (899)
T ss_pred HHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345677889999999999999999998753321 1356667777777777777777666654
No 112
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=92.70 E-value=0.22 Score=51.84 Aligned_cols=58 Identities=21% Similarity=0.239 Sum_probs=49.0
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
..|..+++.|++..|+..|++++..-... ...+.+++.+++++|+|++|+..+.+||+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~-----------------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~ 413 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTD-----------------SYAVLGLGDVAMARKDYAAAERYYQQALR 413 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45778889999999999999999863321 24788999999999999999999999873
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=92.62 E-value=0.29 Score=40.32 Aligned_cols=64 Identities=6% Similarity=-0.062 Sum_probs=36.3
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHH-HHhhC--HHHHHHHHHhhc
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACL-LKLKR--YEEAIGQCSLVS 260 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~-lKl~~--~~~ai~~c~~aL 260 (261)
.....++..|.+-.+...|..|+..+.... .+..-...+++|+|.|+ ...|+ +.+|+...+++|
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al----------~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al 137 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQAL----------QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKAL 137 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 445556666666666666666666654321 11222345667777764 55565 367777666665
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=92.30 E-value=0.3 Score=47.93 Aligned_cols=59 Identities=12% Similarity=-0.021 Sum_probs=36.2
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
.-..++.+++.+++.+|+..+++++..-.+ ....++++|.|+.++|+|++|+...+++|
T Consensus 123 ~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-----------------~~~~~~~~a~~l~~~g~~~~A~~~y~~~~ 181 (694)
T PRK15179 123 FILMLRGVKRQQGIEAGRAEIELYFSGGSS-----------------SAREILLEAKSWDEIGQSEQADACFERLS 181 (694)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcCCC-----------------CHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 344456666666666666666666654322 23456667777777777777777666665
No 115
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=92.11 E-value=0.39 Score=33.12 Aligned_cols=59 Identities=17% Similarity=-0.030 Sum_probs=38.8
Q ss_pred hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHH
Q 024876 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMA 240 (261)
Q Consensus 181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A 240 (261)
.+..+-.++.+.=+.|+|..|+.+|..|++++-..... ..+..+...-..++.=|+++|
T Consensus 5 ~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~-e~~~~~k~~ir~K~~eYl~RA 63 (75)
T cd02677 5 QAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQG-DSSPERREAVKRKIAEYLKRA 63 (75)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHH
Confidence 34444455666667899999999999999998643211 233445555555666676666
No 116
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=92.00 E-value=0.15 Score=46.32 Aligned_cols=74 Identities=19% Similarity=0.298 Sum_probs=57.4
Q ss_pred hhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHH
Q 024876 176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ 255 (261)
Q Consensus 176 ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~ 255 (261)
..++.+....-..||.+|--|+|..|+...+.-|.+... +.. +.-.-..|+|++.||+=+++|..|+.+
T Consensus 189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~e---fGD--------rAaeRRA~sNlgN~hiflg~fe~A~eh 257 (639)
T KOG1130|consen 189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQE---FGD--------RAAERRAHSNLGNCHIFLGNFELAIEH 257 (639)
T ss_pred hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHH---hhh--------HHHHHHhhcccchhhhhhcccHhHHHH
Confidence 345666777888899999999999999999888876432 111 112235899999999999999999999
Q ss_pred HHhhc
Q 024876 256 CSLVS 260 (261)
Q Consensus 256 c~~aL 260 (261)
....|
T Consensus 258 YK~tl 262 (639)
T KOG1130|consen 258 YKLTL 262 (639)
T ss_pred HHHHH
Confidence 87765
No 117
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=91.98 E-value=0.35 Score=47.59 Aligned_cols=58 Identities=17% Similarity=0.160 Sum_probs=44.9
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
..|.-++..|++..|+..|++++..-.. ...++.|++.++.+.|++++|+....++|+
T Consensus 842 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 842 TLGWLLVEKGEADRALPLLRKAVNIAPE-----------------AAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-----------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 3466667777788888888877765321 136888999999999999999999998875
No 118
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=91.93 E-value=0.65 Score=39.96 Aligned_cols=76 Identities=20% Similarity=0.162 Sum_probs=51.1
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhhccccc---------c--ccchhHHHHHHHh------hhhhhhHHHHHHHHhh
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM---------F--QLFGKYRDMALAV------KNPCHLNMAACLLKLK 247 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~---------~--~~~~~~~~~~~~l------~~~~~~N~A~c~lKl~ 247 (261)
+...|+-+.+.|++..|++.|++|++....+.. . +..++-++.+..+ ...++..+|.+++.+|
T Consensus 149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg 228 (280)
T PF13429_consen 149 WLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLG 228 (280)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccc
Confidence 445677778899999999999999998754311 0 1111111122222 2356789999999999
Q ss_pred CHHHHHHHHHhhc
Q 024876 248 RYEEAIGQCSLVS 260 (261)
Q Consensus 248 ~~~~ai~~c~~aL 260 (261)
++++|+....+++
T Consensus 229 ~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 229 RYEEALEYLEKAL 241 (280)
T ss_dssp -HHHHHHHHHHHH
T ss_pred ccccccccccccc
Confidence 9999999988875
No 119
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=91.90 E-value=0.26 Score=49.06 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=45.4
Q ss_pred hhhhHHHHHHHHHHHHHhhccc-c-------------ccccchhHHHHHHHhhh---hhhhHHHHHHHHhhCHHHHHHHH
Q 024876 194 KEEKLEEAMQQYEMAIAYMGDD-F-------------MFQLFGKYRDMALAVKN---PCHLNMAACLLKLKRYEEAIGQC 256 (261)
Q Consensus 194 k~~~~~~A~~~Y~kal~~l~~~-~-------------~~~~~~~~~~~~~~l~~---~~~~N~A~c~lKl~~~~~ai~~c 256 (261)
.++.+.+|+.+|.++|+.-... + .+...-+....+++-.. ..++|+|.||+-+++|..||...
T Consensus 624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 3677889999999998865321 1 01111122333333333 67899999999999999999988
Q ss_pred Hhhc
Q 024876 257 SLVS 260 (261)
Q Consensus 257 ~~aL 260 (261)
..+|
T Consensus 704 e~~l 707 (1018)
T KOG2002|consen 704 ENCL 707 (1018)
T ss_pred HHHH
Confidence 7765
No 120
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=91.80 E-value=0.83 Score=34.59 Aligned_cols=71 Identities=13% Similarity=0.032 Sum_probs=54.2
Q ss_pred chhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876 186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 258 (261)
Q Consensus 186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~ 258 (261)
--.|+..|+.+++-+|+-.|+.|+.+.+.... ..+.+.+++..+++...-|||.-+-.+|+-+-.+++-.-
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~--~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLql 75 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDE--SNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQL 75 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc--cccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHH
Confidence 34688999999999999999999998765421 123344566777778888999999999998777776543
No 121
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=91.76 E-value=0.36 Score=47.19 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=15.1
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHh
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAY 211 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~ 211 (261)
..|..+++.|+|..|+..|++++..
T Consensus 289 ~lg~~l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 289 LYADALIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3455566666666666666666654
No 122
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=91.61 E-value=0.5 Score=42.39 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=17.4
Q ss_pred chhhHHhhhhhhHHHHHHHHHHHHH
Q 024876 186 KMDGNALFKEEKLEEAMQQYEMAIA 210 (261)
Q Consensus 186 K~~Gn~~fk~~~~~~A~~~Y~kal~ 210 (261)
...|+-++..|+|..|+..|++++.
T Consensus 73 ~~la~~~~~~g~~~~A~~~~~~~l~ 97 (389)
T PRK11788 73 LALGNLFRRRGEVDRAIRIHQNLLS 97 (389)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHhc
Confidence 4456677777777777777777665
No 123
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=91.56 E-value=0.37 Score=33.40 Aligned_cols=59 Identities=15% Similarity=0.081 Sum_probs=37.8
Q ss_pred cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHH
Q 024876 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAAC 242 (261)
Q Consensus 183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c 242 (261)
..+-.++..+=+.|+|..|+.+|..||.+|....... .+.....+-.-++.-|.++|--
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e-~d~~~k~~~r~ki~eY~~RAE~ 65 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGT-KDEAKKKNLRQKISEYMDRAEA 65 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 3444556777789999999999999999986432111 2233344444555566666643
No 124
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=91.52 E-value=0.36 Score=50.33 Aligned_cols=58 Identities=12% Similarity=0.061 Sum_probs=49.5
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
..|..++..|+|..|+..|++++..-..+ ..++.+++.++++++++++|+....++|+
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~-----------------~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~ 331 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKD-----------------SEALGALGQAYSQQGDRARAVAQFEKALA 331 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45888899999999999999999863321 25788999999999999999999998873
No 125
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.51 E-value=0.63 Score=36.21 Aligned_cols=62 Identities=21% Similarity=0.209 Sum_probs=47.9
Q ss_pred ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (261)
Q Consensus 184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a 259 (261)
.+-..|-..+++|+|..|+..++....-... + ...-...++++-+|++.++|.+|+.....=
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~----g----------~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPF----G----------EYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC----C----------cccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4456678889999999999888877765432 2 222357889999999999999999987654
No 126
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=91.44 E-value=0.39 Score=33.06 Aligned_cols=61 Identities=16% Similarity=0.087 Sum_probs=37.8
Q ss_pred hhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHH
Q 024876 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMA 240 (261)
Q Consensus 179 ~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A 240 (261)
+..+..+-.+|...=+.|+|..|+.+|..||.+|....-.+ .+......-.-++.-|+++|
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e-~~~~~k~~lr~k~~eyl~RA 63 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYE-TDAQRKEALRQKVLQYVSRA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHH
Confidence 34455555666777789999999999999999985432112 22233333334444555553
No 127
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=91.42 E-value=0.49 Score=40.37 Aligned_cols=63 Identities=11% Similarity=0.111 Sum_probs=51.6
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
+.|.++|+.|+|..|++.|+.+...+... .=..+...++.++..|+.++++.+..+..|-+.|
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~e-----------gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRRE-----------GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhC-----------CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 67999999999999999999996554321 1135556789999999999999999999997765
No 128
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=91.39 E-value=0.5 Score=41.88 Aligned_cols=73 Identities=15% Similarity=0.067 Sum_probs=40.5
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchhHHHHH----------HHhhhhhhhHHHHHHHHh
Q 024876 188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGKYRDMA----------LAVKNPCHLNMAACLLKL 246 (261)
Q Consensus 188 ~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~~~~~~----------~~l~~~~~~N~A~c~lKl 246 (261)
.|..+...|+|.+|...|++++..-..+.. .+..++-...+ ..+...++.++|.|++.+
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 445666777888888888887765432100 00000000000 011223455788888888
Q ss_pred hCHHHHHHHHHhhc
Q 024876 247 KRYEEAIGQCSLVS 260 (261)
Q Consensus 247 ~~~~~ai~~c~~aL 260 (261)
|++++|+....+++
T Consensus 200 G~~~~A~~~~~~~~ 213 (355)
T cd05804 200 GDYEAALAIYDTHI 213 (355)
T ss_pred CCHHHHHHHHHHHh
Confidence 88888887776653
No 129
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=91.34 E-value=0.54 Score=40.58 Aligned_cols=59 Identities=10% Similarity=0.088 Sum_probs=46.3
Q ss_pred hhHHh-hhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 188 DGNAL-FKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 188 ~Gn~~-fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
.+-.+ ++.|+|..|+..|++.+...... .+....+.-++.+|+..++|++|+.....++
T Consensus 148 ~A~~l~~~~~~y~~Ai~af~~fl~~yP~s--------------~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv 207 (263)
T PRK10803 148 AAIALVQDKSRQDDAIVAFQNFVKKYPDS--------------TYQPNANYWLGQLNYNKGKKDDAAYYFASVV 207 (263)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCcCC--------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444 66799999999999999876432 1222467889999999999999999998876
No 130
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.14 E-value=0.31 Score=43.19 Aligned_cols=59 Identities=12% Similarity=0.127 Sum_probs=43.7
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
+--.|..+|-.++-..|++.|+|.|..-..+ -.+++|+++|++--++|+-++.....||
T Consensus 327 iAcia~~yfY~~~PE~AlryYRRiLqmG~~s-----------------peLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129|consen 327 IACIAVGYFYDNNPEMALRYYRRILQMGAQS-----------------PELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred eeeeeeccccCCChHHHHHHHHHHHHhcCCC-----------------hHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence 3344666777777777888887777653221 2589999999999999998888777765
No 131
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=91.13 E-value=0.17 Score=33.55 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=26.1
Q ss_pred hhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 233 NPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 233 ~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
...+.++|.|++.+++|.+|+..++++|+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~ 31 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIE 31 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35789999999999999999999999873
No 132
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=91.05 E-value=0.42 Score=33.01 Aligned_cols=60 Identities=18% Similarity=-0.035 Sum_probs=36.3
Q ss_pred hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccc-cchhHHHHHHHhhhhhhhHHHHH
Q 024876 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ-LFGKYRDMALAVKNPCHLNMAAC 242 (261)
Q Consensus 182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~-~~~~~~~~~~~l~~~~~~N~A~c 242 (261)
+..+-.++.++=+.|+|.+|+..|..|+.+|-.-...+ .++...+.+ ..++.=|+++|-.
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~i-r~K~~eYl~RAE~ 66 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTI-QEKSNEYLDRAQA 66 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH-HHHHHHHHHHHHH
Confidence 34444556666689999999999999999985421111 112222222 4455556666654
No 133
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=90.96 E-value=0.47 Score=48.52 Aligned_cols=22 Identities=9% Similarity=0.101 Sum_probs=17.9
Q ss_pred HhhhhhhHHHHHHHHHHHHHhh
Q 024876 191 ALFKEEKLEEAMQQYEMAIAYM 212 (261)
Q Consensus 191 ~~fk~~~~~~A~~~Y~kal~~l 212 (261)
.++..|+|..|+..|++|+..-
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~l~ 606 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLNIA 606 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC
Confidence 3345599999999999999764
No 134
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=90.77 E-value=0.49 Score=31.79 Aligned_cols=34 Identities=24% Similarity=0.210 Sum_probs=25.7
Q ss_pred hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccc
Q 024876 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDD 215 (261)
Q Consensus 182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~ 215 (261)
+..+-..|..+=+.|+|..|+..|..|+.+|...
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 38 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEYLMQA 38 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3344455555567899999999999999998643
No 135
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.30 E-value=0.26 Score=45.32 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=25.1
Q ss_pred ccchhhHHhhhhhhHHHHHHHHHHHHHh
Q 024876 184 RRKMDGNALFKEEKLEEAMQQYEMAIAY 211 (261)
Q Consensus 184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~ 211 (261)
.+-.+||..|..|+|..|+..|+.||+-
T Consensus 492 a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 492 ALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 4667899999999999999999999864
No 136
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.09 E-value=0.72 Score=39.62 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=44.1
Q ss_pred hHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 189 Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
|..+|.+|+|..|...|.++++-.....- ..-.++-++.|+..+++.++|+....+++
T Consensus 185 Ge~~y~qg~y~~Aa~~f~~~~k~~P~s~K--------------ApdallKlg~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 185 GESLYAQGDYEDAAYIFARVVKDYPKSPK--------------APDALLKLGVSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHhcccchHHHHHHHHHHHhCCCCCC--------------ChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 77778888888888888888875443210 01367789999999999999999888875
No 137
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=90.07 E-value=0.78 Score=41.14 Aligned_cols=84 Identities=8% Similarity=0.005 Sum_probs=52.9
Q ss_pred HhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchhHHHHHHH----------hhhhhh
Q 024876 178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGKYRDMALA----------VKNPCH 236 (261)
Q Consensus 178 ~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~~~~~~~~----------l~~~~~ 236 (261)
....+...-..|..+...|++..|+..|++++..-..... .+..++-...++. .....+
T Consensus 31 ~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 110 (389)
T PRK11788 31 ESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLAL 110 (389)
T ss_pred hhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 3445555556788888999999999999999986432110 0000000001111 122467
Q ss_pred hHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 237 LNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 237 ~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
.+++.++.+.|+|+.|+....++++
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~~~l~ 135 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFLQLVD 135 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 7888888888999998888877753
No 138
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=89.65 E-value=0.77 Score=40.66 Aligned_cols=29 Identities=10% Similarity=-0.009 Sum_probs=24.1
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhhc
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMG 213 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~ 213 (261)
....|.-++..|++.+|+..|.+++....
T Consensus 151 ~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 151 VHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 34567888999999999999999998653
No 139
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=89.50 E-value=0.69 Score=40.16 Aligned_cols=70 Identities=21% Similarity=0.069 Sum_probs=47.4
Q ss_pred hhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 258 (261)
Q Consensus 179 ~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~ 258 (261)
-..+......||.+-..++|.+|...|.+|..+..... . ......+|.+.+.|+.+. ++.+|+....+
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~------~-----~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~ 99 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG------D-----KFEAAKAYEEAANCYKKG-DPDEAIECYEK 99 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHHHT-THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC------C-----HHHHHHHHHHHHHHHHhh-CHHHHHHHHHH
Confidence 34455666667766678888899999999887754310 0 122346777888887776 88888888777
Q ss_pred hc
Q 024876 259 VS 260 (261)
Q Consensus 259 aL 260 (261)
|+
T Consensus 100 A~ 101 (282)
T PF14938_consen 100 AI 101 (282)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 140
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.44 E-value=1 Score=40.24 Aligned_cols=59 Identities=20% Similarity=0.105 Sum_probs=50.4
Q ss_pred chhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
-+++-.||+.++|..|..-...|+.+ ....++.|+.++++...|+...+|..+|..||+
T Consensus 135 ~NRA~AYlk~K~FA~AE~DC~~AiaL-----------------d~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 135 INRALAYLKQKSFAQAEEDCEAAIAL-----------------DKLYVKAYSRRMQARESLGNNMEAKKDCETVLA 193 (536)
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHh-----------------hHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHh
Confidence 34567789999999888888888865 456688999999999999999999999999974
No 141
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=89.28 E-value=0.94 Score=45.25 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=51.1
Q ss_pred chhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
--.+|.+|-+|+|..+...+.-|+..... ..++.-.+.++|.||..+|+|++|..+.-++++
T Consensus 274 ~~LAn~fyfK~dy~~v~~la~~ai~~t~~--------------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k 335 (1018)
T KOG2002|consen 274 NHLANHFYFKKDYERVWHLAEHAIKNTEN--------------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK 335 (1018)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhhh--------------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc
Confidence 33479999999999999999999976422 345567899999999999999999999888763
No 142
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=89.16 E-value=0.68 Score=45.53 Aligned_cols=62 Identities=10% Similarity=-0.079 Sum_probs=50.3
Q ss_pred cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
..+...|-.+-+.|+|.+|+..|++++... .+ ....+.|+|.++.++|+.++|...+.+||+
T Consensus 155 ~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~----------------~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 155 REILLEAKSWDEIGQSEQADACFERLSRQH-PE----------------FENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CC----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566777788999999999999999732 11 125899999999999999999999999873
No 143
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.53 E-value=0.59 Score=28.22 Aligned_cols=27 Identities=19% Similarity=0.094 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 235 CHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 235 ~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
.+.++|.+|..+|++++|+....++|+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 578899999999999999999998874
No 144
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=88.42 E-value=0.84 Score=44.66 Aligned_cols=26 Identities=19% Similarity=0.056 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 235 CHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 235 ~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
++.|++.+++++++|++|+..+.++|
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44555555555555555555555543
No 145
>PRK12370 invasion protein regulator; Provisional
Probab=88.42 E-value=1.1 Score=42.89 Aligned_cols=76 Identities=16% Similarity=-0.004 Sum_probs=52.1
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhhcccccc-----------ccchhHHHHHHHh-------hhhhhhHHHHHHHHh
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF-----------QLFGKYRDMALAV-------KNPCHLNMAACLLKL 246 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~-----------~~~~~~~~~~~~l-------~~~~~~N~A~c~lKl 246 (261)
.-..|.-++..|++.+|+..|.+++++-...... ...++-...++.. ....+.|++.|+..+
T Consensus 375 ~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~ 454 (553)
T PRK12370 375 KYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLK 454 (553)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhC
Confidence 4567899999999999999999999875432100 0001111112221 233588999999999
Q ss_pred hCHHHHHHHHHhhc
Q 024876 247 KRYEEAIGQCSLVS 260 (261)
Q Consensus 247 ~~~~~ai~~c~~aL 260 (261)
|++++|+..+.+++
T Consensus 455 G~~~eA~~~~~~~~ 468 (553)
T PRK12370 455 GKHELARKLTKEIS 468 (553)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999887654
No 146
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=88.30 E-value=1.5 Score=30.21 Aligned_cols=63 Identities=14% Similarity=0.052 Sum_probs=40.2
Q ss_pred hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHH
Q 024876 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLL 244 (261)
Q Consensus 181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~l 244 (261)
.|..+-.++.++=+.|+|.+|+.+|+.|+..|-.... ..++.....+-..++.=|.|+|-..-
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~-~~pD~~~k~~yr~ki~eY~~Rae~Lk 67 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVK-NYPDSPTRLIYEQMINEYKRRIEVLE 67 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666777899999999999999998854211 11123333444556666777776543
No 147
>PRK15331 chaperone protein SicA; Provisional
Probab=87.99 E-value=1.4 Score=35.15 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=39.8
Q ss_pred hHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 189 Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
|--+=..++|..|+..|..|..+-..+. .-+...+.||+.+++...|+.....|+
T Consensus 78 aa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp-----------------~p~f~agqC~l~l~~~~~A~~~f~~a~ 132 (165)
T PRK15331 78 AAVCQLKKQFQKACDLYAVAFTLLKNDY-----------------RPVFFTGQCQLLMRKAAKARQCFELVN 132 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCC-----------------CccchHHHHHHHhCCHHHHHHHHHHHH
Confidence 3333457888899999988886533221 236678999999999999998766654
No 148
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.96 E-value=1.3 Score=36.74 Aligned_cols=62 Identities=23% Similarity=0.193 Sum_probs=49.8
Q ss_pred cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
..+-.+|-.+.|.+++..|+.-..+||.+-.. ....+..+|-.|-|+..|++|+.+..++|+
T Consensus 135 Ily~Nraaa~iKl~k~e~aI~dcsKaiel~pt-----------------y~kAl~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 135 ILYSNRAAALIKLRKWESAIEDCSKAIELNPT-----------------YEKALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-----------------hHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34556788889999999999999999986332 124556789999999999999999988864
No 149
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.93 E-value=0.53 Score=27.44 Aligned_cols=32 Identities=22% Similarity=0.156 Sum_probs=25.4
Q ss_pred cccchhhHHhhhhhhHHHHHHHHHHHHHhhcc
Q 024876 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD 214 (261)
Q Consensus 183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~ 214 (261)
..+...|+.++..|+|.+|...|++++.+...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 34567789999999999999999999987654
No 150
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=87.82 E-value=0.42 Score=42.62 Aligned_cols=37 Identities=8% Similarity=0.102 Sum_probs=28.6
Q ss_pred hhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhh
Q 024876 176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM 212 (261)
Q Consensus 176 ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l 212 (261)
-.+++.+.+.-+........++|..++..|++.++.-
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~e 299 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE 299 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 3446666677777788888899999999999988753
No 151
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=87.79 E-value=1.1 Score=30.64 Aligned_cols=61 Identities=16% Similarity=0.131 Sum_probs=37.1
Q ss_pred hhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHH
Q 024876 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 241 (261)
Q Consensus 180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~ 241 (261)
..+..+-.+|...=+.|+|..|+..|..|+.+|-....... +......-..++.-|+++|-
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~-~~~~k~~~~~k~~eyl~RaE 64 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEK-NPKSKESIRAKCTEYLDRAE 64 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHHHH
Confidence 44455556667777899999999999999998854211111 22233333444445555543
No 152
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.56 E-value=1.3 Score=38.62 Aligned_cols=58 Identities=22% Similarity=0.201 Sum_probs=45.3
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
.++-.+-+-|.|..|++-.++||.+- .-....|.-|.++|+-+|+|.+|+....+||+
T Consensus 120 NRAAAy~~Lg~~~~AVkDce~Al~iD-----------------p~yskay~RLG~A~~~~gk~~~A~~aykKaLe 177 (304)
T KOG0553|consen 120 NRAAAYSKLGEYEDAVKDCESALSID-----------------PHYSKAYGRLGLAYLALGKYEEAIEAYKKALE 177 (304)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-----------------hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhc
Confidence 44555666777777777777777652 22347899999999999999999999999985
No 153
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.36 E-value=0.67 Score=25.88 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=24.0
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhh
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYM 212 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l 212 (261)
.-..|..+.+.|++..|+..|++++++-
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3456888899999999999999999863
No 154
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=87.28 E-value=1.1 Score=44.29 Aligned_cols=64 Identities=25% Similarity=0.215 Sum_probs=50.3
Q ss_pred hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
+.-+.+.+..+-..|+|+.|++.|..++..-.+. ..-++.++|.||+.+++|++|+....+||.
T Consensus 414 ~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~----------------~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~ 477 (895)
T KOG2076|consen 414 VDLYLDLADALTNIGKYKEALRLLSPITNREGYQ----------------NAFVWYKLARCYMELGEYEEAIEFYEKVLI 477 (895)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc----------------chhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3445566777778899999999998887542211 146899999999999999999999999874
No 155
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=87.15 E-value=1.6 Score=40.93 Aligned_cols=60 Identities=23% Similarity=0.316 Sum_probs=46.1
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a 259 (261)
..|.-+..+|+...|+..|++|+.. ..+.+++...|+..++.|++-+.+|.+|..+...-
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~-------------q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIES-------------QSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccc-------------hhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 3455556678888888888887732 12356778899999999999999999999876654
No 156
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=86.46 E-value=1.7 Score=37.05 Aligned_cols=65 Identities=17% Similarity=0.172 Sum_probs=50.5
Q ss_pred hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (261)
Q Consensus 181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a 259 (261)
-+..+-+.|....+.|+|..|++.|.+...-.... .+.-...+.++-+++|-++|.+|+...++=
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s--------------~~~~qa~l~l~yA~Yk~~~y~~A~~~~drF 97 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFS--------------PYSEQAQLDLAYAYYKNGEYDLALAYIDRF 97 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--------------cccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34667788899999999999999999887543322 111256778999999999999999987653
No 157
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.98 E-value=1.2 Score=23.63 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHhhCHHHHHHHHH
Q 024876 235 CHLNMAACLLKLKRYEEAIGQCS 257 (261)
Q Consensus 235 ~~~N~A~c~lKl~~~~~ai~~c~ 257 (261)
+++|+|..+..+|++++|...+.
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 67899999999999999998765
No 158
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=85.62 E-value=1.9 Score=29.37 Aligned_cols=58 Identities=19% Similarity=0.095 Sum_probs=34.4
Q ss_pred hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHH
Q 024876 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMA 240 (261)
Q Consensus 182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A 240 (261)
+..+-..|...=+.|+|..|+..|..|+..|-...... .+......-.-++.-|+++|
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~-~~~~~k~~l~~k~~~yl~Ra 63 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAE-KEPKLRKLLRKKVKEYLDRA 63 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHH
Confidence 33444455666677999999999999999886432112 12222233334444555554
No 159
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=85.59 E-value=2.1 Score=39.72 Aligned_cols=55 Identities=29% Similarity=0.331 Sum_probs=42.2
Q ss_pred hHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 189 Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
|--+++.+++++|+..+++++...... ..+..|+|.+++++|++.+|+...+..+
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l~P~~-----------------~~l~~~~a~all~~g~~~eai~~L~~~~ 401 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALALDPNS-----------------PLLQLNLAQALLKGGKPQEAIRILNRYL 401 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCc-----------------cHHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence 344456788888888888888765431 3688999999999999999998766543
No 160
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=85.23 E-value=1.9 Score=43.01 Aligned_cols=28 Identities=7% Similarity=0.065 Sum_probs=23.9
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhh
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYM 212 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l 212 (261)
+...|..+.+.|++..|+..|++++..-
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~ 79 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLE 79 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4556778899999999999999999864
No 161
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.09 E-value=1.6 Score=39.15 Aligned_cols=54 Identities=26% Similarity=0.375 Sum_probs=41.8
Q ss_pred hHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (261)
Q Consensus 189 Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a 259 (261)
|--+|.-|+|++|+..|+-+..- .+. -..+..|+|-|++=+|.|.+|.....+|
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~--~~~---------------~~el~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNK--DDA---------------PAELGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhcc--CCC---------------CcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 34568999999999999887752 111 1358899999999999999998866554
No 162
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=84.54 E-value=3.6 Score=28.64 Aligned_cols=53 Identities=13% Similarity=0.151 Sum_probs=38.9
Q ss_pred hhhhHHHHHHHHHHHHHhhcccc--c--cccchhHHHHHHHhhhhhhhHHHHHHHHh
Q 024876 194 KEEKLEEAMQQYEMAIAYMGDDF--M--FQLFGKYRDMALAVKNPCHLNMAACLLKL 246 (261)
Q Consensus 194 k~~~~~~A~~~Y~kal~~l~~~~--~--~~~~~~~~~~~~~l~~~~~~N~A~c~lKl 246 (261)
..|....|+..|++|++.+..-. + .....++++.++.++-++..|+..+.-.|
T Consensus 20 E~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL 76 (79)
T cd02679 20 EWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL 76 (79)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34788899999999999986532 1 13345778888888888888877765544
No 163
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.35 E-value=1.8 Score=39.37 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=48.5
Q ss_pred chhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876 186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (261)
Q Consensus 186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a 259 (261)
.+.|-.+...|++..|++.|.|+..|+-.. +--+..++|+-.+-+-+++|-....+.++|
T Consensus 154 ~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~--------------khvInm~ln~i~VSI~~~nw~hv~sy~~~A 213 (466)
T KOG0686|consen 154 EDLGDHYLDCGQLDNALRCYSRARDYCTSA--------------KHVINMCLNLILVSIYMGNWGHVLSYISKA 213 (466)
T ss_pred HHHHHHHHHhccHHHHHhhhhhhhhhhcch--------------HHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Confidence 345777788999999999999999987542 233567888888889999999998887776
No 164
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=84.14 E-value=3.7 Score=28.00 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=25.7
Q ss_pred hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhcc
Q 024876 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD 214 (261)
Q Consensus 181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~ 214 (261)
.+..+-.+|...=+.|+|..|+..|..|+..|..
T Consensus 7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 7 KAKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3344445556665689999999999999998865
No 165
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=83.87 E-value=2.2 Score=37.98 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=42.8
Q ss_pred HhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 191 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 191 ~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
..|--|||..|+.-.++|+.+- .-.++++..-|.|++.|++|.+|+..|.+.|
T Consensus 128 a~~~l~NyRs~l~Dcs~al~~~-----------------P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 128 AQLYLGNYRSALNDCSAALKLK-----------------PTHLKAYIRGAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-----------------cchhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 3344588888888888888752 2236899999999999999999999998765
No 166
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.86 E-value=1.5 Score=22.74 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=22.8
Q ss_pred chhhHHhhhhhhHHHHHHHHHHHHHh
Q 024876 186 KMDGNALFKEEKLEEAMQQYEMAIAY 211 (261)
Q Consensus 186 K~~Gn~~fk~~~~~~A~~~Y~kal~~ 211 (261)
...|..++..++|..|...|++++..
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 45688899999999999999999875
No 167
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.57 E-value=3.1 Score=35.08 Aligned_cols=82 Identities=18% Similarity=0.064 Sum_probs=51.6
Q ss_pred hhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc--------------cccchhHHHH---HHHhhhhhhhHHHH
Q 024876 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM--------------FQLFGKYRDM---ALAVKNPCHLNMAA 241 (261)
Q Consensus 179 ~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~--------------~~~~~~~~~~---~~~l~~~~~~N~A~ 241 (261)
-..+...-+.|-.++.+|++..|....++||..-..... .+..++.-.. +..-.-.++||...
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~ 111 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH
Confidence 345556677889999999999999999999986433210 0000111111 11112246777777
Q ss_pred HHHHhhCHHHHHHHHHhhc
Q 024876 242 CLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 242 c~lKl~~~~~ai~~c~~aL 260 (261)
-...+|+|++|.....+||
T Consensus 112 FLC~qg~~~eA~q~F~~Al 130 (250)
T COG3063 112 FLCAQGRPEEAMQQFERAL 130 (250)
T ss_pred HHHhCCChHHHHHHHHHHH
Confidence 7777778877777777765
No 168
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.42 E-value=1.9 Score=40.82 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=34.1
Q ss_pred HHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 203 QQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 203 ~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
+.|.||++++..-.... .--..+++-|.+.+..-.+..+||...++||+
T Consensus 444 ~efdraiDcf~~AL~v~----------Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVK----------PNDYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred hHHHHHHHHHHHHHhcC----------CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 45777777765421111 11136788889999999999999999999974
No 169
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=83.26 E-value=2.7 Score=41.89 Aligned_cols=27 Identities=7% Similarity=-0.128 Sum_probs=20.0
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHhhc
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAYMG 213 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~ 213 (261)
..|..+...|++..|+..+++++....
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~~P 390 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYNAP 390 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 355666778888888888888877643
No 170
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=82.41 E-value=1.9 Score=37.12 Aligned_cols=58 Identities=24% Similarity=0.185 Sum_probs=32.3
Q ss_pred chhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
...|..++..|++..|+..|+++++.-..+ ...+.++|-++.+.|++++|...-.+++
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~~~~p~d-----------------~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKALKLNPDD-----------------PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHSTT------------------HHHHHHHHHHHT----------------
T ss_pred HHHHHHhccccccccccccccccccccccc-----------------cccccccccccccccccccccccccccc
Confidence 445788888999999999999988754322 3678899999999999999998877765
No 171
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.49 E-value=2.2 Score=26.12 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=22.4
Q ss_pred hhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 236 HLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 236 ~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
.+|+|..|+++|+++.|..--.++|
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHH
Confidence 4789999999999999999888776
No 172
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=81.28 E-value=2.7 Score=35.65 Aligned_cols=55 Identities=20% Similarity=0.202 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHH-hhCHHHHHHHHHhhc
Q 024876 197 KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK-LKRYEEAIGQCSLVS 260 (261)
Q Consensus 197 ~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lK-l~~~~~ai~~c~~aL 260 (261)
-...|...|+.|+.+.....+. ...+++.+.+|.|..|.. +++..+|+.-+.+|+
T Consensus 141 ~~~~a~~aY~~A~~~a~~~L~~---------~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~af 196 (236)
T PF00244_consen 141 AAEKALEAYEEALEIAKKELPP---------THPLRLGLALNYSVFYYEILNDPEKAIEIAKQAF 196 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCT---------TSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHhcccCC---------CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3468999999999987653221 146888999999998866 899999999998875
No 173
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=81.21 E-value=1.9 Score=37.74 Aligned_cols=28 Identities=29% Similarity=0.296 Sum_probs=23.9
Q ss_pred hhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 234 PCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 234 ~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
.+++-+|.|++.+++|++|.....+||+
T Consensus 202 ~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 202 KLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4577799999999999999999998874
No 174
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=80.84 E-value=7.6 Score=29.46 Aligned_cols=64 Identities=20% Similarity=0.182 Sum_probs=47.3
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876 190 NALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (261)
Q Consensus 190 n~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a 259 (261)
..+-+-|+|..++..-.+||.|++..-... .++ -++.+..-.|+|..+--+|+.++|+...+.+
T Consensus 63 ~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~--qde----GklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 63 GALAGLGRYDECLQSADRALRYFNRRGELH--QDE----GKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHH--TT--STH----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHHHhhccccc--ccc----chhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 345578999999999999999997531111 111 4667888999999999999999999987665
No 175
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.21 E-value=3.1 Score=22.66 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=22.4
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHhh
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAYM 212 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l 212 (261)
..|.-+++.|++..|+..|++.+...
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 46778889999999999999998754
No 176
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=79.93 E-value=5.5 Score=34.07 Aligned_cols=55 Identities=22% Similarity=0.228 Sum_probs=39.1
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHH
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC 256 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c 256 (261)
.-..|-.+-+.|++..|-+.|.+|+++.... ...++|++.-|+-.|++..|....
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~-----------------p~~~nNlgms~~L~gd~~~A~~ll 191 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELAPNE-----------------PSIANNLGMSLLLRGDLEDAETLL 191 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhccCC-----------------chhhhhHHHHHHHcCCHHHHHHHH
Confidence 4456778889999999999999999987543 145566666666666666555543
No 177
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=79.87 E-value=2.9 Score=38.31 Aligned_cols=62 Identities=18% Similarity=0.248 Sum_probs=46.4
Q ss_pred hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHH
Q 024876 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC 256 (261)
Q Consensus 182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c 256 (261)
..++-.+|-.+||.|+|..-+..|++|+..--.+ ......+|+-+..+|.-+++|.+|+.+-
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeD-------------l~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTED-------------LSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchH-------------HHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 3445678999999999999999999999753221 2345567788888888888888887653
No 178
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.44 E-value=2.8 Score=36.22 Aligned_cols=59 Identities=17% Similarity=0.177 Sum_probs=44.4
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
.+..+--+.-+++|..|.+.|.+++..-+. -+..-+|-|+|++=+++..+|++....++
T Consensus 255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-----------------~~~a~NnKALcllYlg~l~DAiK~~e~~~ 313 (366)
T KOG2796|consen 255 LMNSAFLHLGQNNFAEAHRFFTEILRMDPR-----------------NAVANNNKALCLLYLGKLKDALKQLEAMV 313 (366)
T ss_pred HhhhhhheecccchHHHHHHHhhccccCCC-----------------chhhhchHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455688899999999888864221 14678899999999999999999887765
No 179
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.19 E-value=5.4 Score=38.05 Aligned_cols=70 Identities=20% Similarity=0.257 Sum_probs=47.7
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHH-----H--------H------HHhhhhhhhHHHHHHHH
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRD-----M--------A------LAVKNPCHLNMAACLLK 245 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~-----~--------~------~~l~~~~~~N~A~c~lK 245 (261)
+.-++..+|+.++|..|+..|+..++--..+ .++++. . + ..--..+++|.|-.++-
T Consensus 113 l~L~AQvlYrl~~ydealdiY~~L~kn~~dd-----~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~ 187 (652)
T KOG2376|consen 113 LELRAQVLYRLERYDEALDIYQHLAKNNSDD-----QDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIE 187 (652)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCch-----HHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHh
Confidence 3446888999999999999999886532211 111111 0 0 00122468899999999
Q ss_pred hhCHHHHHHHHHhh
Q 024876 246 LKRYEEAIGQCSLV 259 (261)
Q Consensus 246 l~~~~~ai~~c~~a 259 (261)
.++|.+|+.....|
T Consensus 188 ~gky~qA~elL~kA 201 (652)
T KOG2376|consen 188 NGKYNQAIELLEKA 201 (652)
T ss_pred cccHHHHHHHHHHH
Confidence 99999999877666
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=79.16 E-value=4.5 Score=38.46 Aligned_cols=56 Identities=14% Similarity=-0.080 Sum_probs=45.3
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 188 ~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
.|-.+..+|++..|...|++|+.+-.+ ...|..++.++.-.|++++|+..+.+|+.
T Consensus 426 la~~~~~~g~~~~A~~~l~rAl~L~ps------------------~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 426 LAVQALVKGKTDEAYQAINKAIDLEMS------------------WLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555689999999999999976321 35788999999999999999999999863
No 181
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=79.12 E-value=2.7 Score=25.22 Aligned_cols=27 Identities=19% Similarity=0.026 Sum_probs=23.4
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHhhc
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAYMG 213 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~ 213 (261)
..|..+...|++.+|++.|+++++...
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 457788899999999999999998754
No 182
>PLN02789 farnesyltranstransferase
Probab=78.90 E-value=3 Score=37.06 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=15.8
Q ss_pred hhhhhHHHHHHHHHHHHHhhc
Q 024876 193 FKEEKLEEAMQQYEMAIAYMG 213 (261)
Q Consensus 193 fk~~~~~~A~~~Y~kal~~l~ 213 (261)
.+.+.+.+|+..|.++|.+..
T Consensus 48 ~~~e~serAL~lt~~aI~lnP 68 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNP 68 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCc
Confidence 345678899999998887643
No 183
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=78.49 E-value=2.5 Score=29.14 Aligned_cols=33 Identities=18% Similarity=0.075 Sum_probs=25.7
Q ss_pred hcccchhhHHhhhhhhHHHHHHHHHHHHHhhcc
Q 024876 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD 214 (261)
Q Consensus 182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~ 214 (261)
+..+-.+|+..=..|+|..|++.|..|+.+|-.
T Consensus 6 ai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 6 AHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 344445556666789999999999999999864
No 184
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=78.22 E-value=4.6 Score=31.02 Aligned_cols=55 Identities=18% Similarity=0.159 Sum_probs=38.1
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 188 ~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
.+.-++..|+|..|+..+...- . .......+.-++-+++++|++++|+....+||
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~----~--------------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIP----D--------------EAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhcc----C--------------cchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 3566677777777777764411 0 11122345568999999999999999998886
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=78.09 E-value=8.2 Score=29.08 Aligned_cols=60 Identities=22% Similarity=0.186 Sum_probs=45.4
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
..|..+-.-|++.+|+...+.++.-...+ .+...+...+|+|...+|++++|+..+-.+|
T Consensus 43 ~lastlr~LG~~deA~~~L~~~~~~~p~~--------------~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 43 QLASTLRNLGRYDEALALLEEALEEFPDD--------------ELNAALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCc--------------cccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46777788899999999999998754321 1223556668899999999999998776554
No 186
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=77.98 E-value=2.1 Score=39.65 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=28.3
Q ss_pred HhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 230 AVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 230 ~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
.-....++|++.+|.++++|++|+..|++||+
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe 103 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE 103 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33457899999999999999999999999974
No 187
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=77.85 E-value=4.8 Score=37.38 Aligned_cols=73 Identities=23% Similarity=0.307 Sum_probs=45.5
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHHhhccccc--cccchh------------HHHHHHH---hhhhhhhHHHHHHHHhhCHH
Q 024876 188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFM--FQLFGK------------YRDMALA---VKNPCHLNMAACLLKLKRYE 250 (261)
Q Consensus 188 ~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~--~~~~~~------------~~~~~~~---l~~~~~~N~A~c~lKl~~~~ 250 (261)
.|-++..-+|-..|+..|++|+++...++. .++..- .-++... -=..++.=|+.||.|+++..
T Consensus 370 mGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~ 449 (559)
T KOG1155|consen 370 MGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLE 449 (559)
T ss_pred hhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHH
Confidence 366666677777888888888887654310 011000 0001111 11235567899999999999
Q ss_pred HHHHHHHhhc
Q 024876 251 EAIGQCSLVS 260 (261)
Q Consensus 251 ~ai~~c~~aL 260 (261)
+|+.....|+
T Consensus 450 eAiKCykrai 459 (559)
T KOG1155|consen 450 EAIKCYKRAI 459 (559)
T ss_pred HHHHHHHHHH
Confidence 9999888775
No 188
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=77.80 E-value=2 Score=41.25 Aligned_cols=78 Identities=12% Similarity=0.093 Sum_probs=53.5
Q ss_pred ccchhhHHhhhhhhHHHHHHHHHHHHHhhcc-ccc-------cccchhHHHHHHHhhh---------hhhhHHHHHHHHh
Q 024876 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGD-DFM-------FQLFGKYRDMALAVKN---------PCHLNMAACLLKL 246 (261)
Q Consensus 184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~-~~~-------~~~~~~~~~~~~~l~~---------~~~~N~A~c~lKl 246 (261)
.....||-+=-++++..|+++|+||+.+-.. .+. ....++....+.-.+. .++.-+.++|+|+
T Consensus 423 sWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kq 502 (638)
T KOG1126|consen 423 SWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQ 502 (638)
T ss_pred HHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheecc
Confidence 3556799888899999999999999976431 111 1112222233333332 2455689999999
Q ss_pred hCHHHHHHHHHhhcC
Q 024876 247 KRYEEAIGQCSLVSK 261 (261)
Q Consensus 247 ~~~~~ai~~c~~aL~ 261 (261)
++++.|..+..+|++
T Consensus 503 ek~e~Ae~~fqkA~~ 517 (638)
T KOG1126|consen 503 EKLEFAEFHFQKAVE 517 (638)
T ss_pred chhhHHHHHHHhhhc
Confidence 999999999998874
No 189
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.14 E-value=5.4 Score=35.95 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=37.8
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHH
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEA 252 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~a 252 (261)
.-..+..+|-+-.|.+|+..|++.+.-- .-.+.+..|+|+||.|+.=|+-+
T Consensus 154 qLSLAsvhYmR~HYQeAIdvYkrvL~dn-----------------~ey~alNVy~ALCyyKlDYydvs 204 (557)
T KOG3785|consen 154 QLSLASVHYMRMHYQEAIDVYKRVLQDN-----------------PEYIALNVYMALCYYKLDYYDVS 204 (557)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcC-----------------hhhhhhHHHHHHHHHhcchhhhH
Confidence 3344567788999999999999998421 12346778999999999866543
No 190
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.22 E-value=13 Score=31.61 Aligned_cols=68 Identities=24% Similarity=0.461 Sum_probs=47.5
Q ss_pred hhcccchhhHHhhhh--hhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876 181 AADRRKMDGNALFKE--EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 258 (261)
Q Consensus 181 ~a~~~K~~Gn~~fk~--~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~ 258 (261)
.+.+.+..=-+.|.. .++..|+.+|+.|-.++... +......+|++-.|.-.-.+++|.+||.-..+
T Consensus 111 ~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e-----------es~ssANKC~lKvA~yaa~leqY~~Ai~iyeq 179 (288)
T KOG1586|consen 111 MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE-----------ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQ 179 (288)
T ss_pred HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch-----------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344432 58889999999999887532 33455667888888888899999999987665
Q ss_pred h
Q 024876 259 V 259 (261)
Q Consensus 259 a 259 (261)
+
T Consensus 180 v 180 (288)
T KOG1586|consen 180 V 180 (288)
T ss_pred H
Confidence 4
No 191
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=74.90 E-value=6.6 Score=35.52 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=56.8
Q ss_pred hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc---------cccch--hH---------------HHHHHHhhhh
Q 024876 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM---------FQLFG--KY---------------RDMALAVKNP 234 (261)
Q Consensus 181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~---------~~~~~--~~---------------~~~~~~l~~~ 234 (261)
+..+.-+.|..+|...++.+|+..+.+.|.-+++.+. .-..+ .. .-+-..++..
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667899999999999999999999887754321 00000 00 0012345567
Q ss_pred hhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 235 CHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 235 ~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
.|+|+|..+-++.+|.+++.+|...|
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l 110 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCL 110 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 89999999999999999999998654
No 192
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=74.87 E-value=4.2 Score=35.88 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=27.2
Q ss_pred hhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhc
Q 024876 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMG 213 (261)
Q Consensus 179 ~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~ 213 (261)
++.+..+-.++.+.=+.++|.+|++.|+.|+.|+-
T Consensus 7 l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~ 41 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFL 41 (439)
T ss_pred HHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHH
Confidence 44455555566666688999999999999999974
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=74.57 E-value=3.4 Score=26.71 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.3
Q ss_pred hHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 237 LNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 237 ~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
+++|..+++.|+|++|+..+.++|+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~ 25 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALK 25 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3689999999999999999998874
No 194
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=74.21 E-value=3.8 Score=39.92 Aligned_cols=75 Identities=16% Similarity=0.155 Sum_probs=42.4
Q ss_pred chhhHHhhhhhhHHHHHHHHHHHHHhhccc----ccc-----ccchhHHH---------HHHHhhhhhhhHHHHHHHHhh
Q 024876 186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDD----FMF-----QLFGKYRD---------MALAVKNPCHLNMAACLLKLK 247 (261)
Q Consensus 186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~----~~~-----~~~~~~~~---------~~~~l~~~~~~N~A~c~lKl~ 247 (261)
+..|+-.+.+++|..|.+++++.+++-.-. +.. .. .+... .+..-+...++|++..|++++
T Consensus 489 r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql-ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~ 567 (777)
T KOG1128|consen 489 RSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL-EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLK 567 (777)
T ss_pred HhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH-hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHh
Confidence 344555567789999998888888753210 000 00 00000 112223445677777777777
Q ss_pred CHHHHHHHHHhhcC
Q 024876 248 RYEEAIGQCSLVSK 261 (261)
Q Consensus 248 ~~~~ai~~c~~aL~ 261 (261)
+-.+|-..-.+||+
T Consensus 568 ~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 568 KKKRAFRKLKEALK 581 (777)
T ss_pred hhHHHHHHHHHHhh
Confidence 77777766666653
No 195
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=73.69 E-value=9.9 Score=31.14 Aligned_cols=66 Identities=17% Similarity=0.086 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 196 EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 196 ~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
+....|+..|+..++-...+.-...-......++.....--+.+|.-|++.+.|..|+..++.+|+
T Consensus 104 ~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 104 TSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 445578888888887665432111122334456666667778899999999999999999998873
No 196
>PLN02789 farnesyltranstransferase
Probab=73.57 E-value=6.7 Score=34.88 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=26.1
Q ss_pred hhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 233 NPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 233 ~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
..++++++.+..++++|++++..|+++|+
T Consensus 142 y~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 142 YHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45788999999999999999999999874
No 197
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.64 E-value=12 Score=35.84 Aligned_cols=74 Identities=15% Similarity=0.060 Sum_probs=53.7
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
+-+.+..+...|+|.+|++...+|++++......+... .+++......+..-+|-++..+|+-.+|..-....|
T Consensus 178 ~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~--eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 178 LYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN--EEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc--hhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 34445666779999999999999988875543222222 345566667888899999999999999988555443
No 198
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=72.47 E-value=11 Score=28.64 Aligned_cols=61 Identities=21% Similarity=0.132 Sum_probs=45.6
Q ss_pred hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 258 (261)
Q Consensus 181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~ 258 (261)
........+..+...|+|..|++.+++++..-..+ -.+|.-+-.|+..+|++..|+....+
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~-----------------E~~~~~lm~~~~~~g~~~~A~~~Y~~ 121 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYD-----------------EEAYRLLMRALAAQGRRAEALRVYER 121 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT------------------HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC-----------------HHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 44456667777888999999999999999863321 15777788999999999999986654
No 199
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=72.41 E-value=6.4 Score=38.48 Aligned_cols=73 Identities=15% Similarity=0.107 Sum_probs=45.5
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHHhhccccc-c-ccc-------h--hHHH------HHHHhhhhhhhHHHHHHHHhhCHH
Q 024876 188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFM-F-QLF-------G--KYRD------MALAVKNPCHLNMAACLLKLKRYE 250 (261)
Q Consensus 188 ~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-~-~~~-------~--~~~~------~~~~l~~~~~~N~A~c~lKl~~~~ 250 (261)
.|.-..+.+++..|...|.+++.+-.+... + +.+ . +.+. ..+.-..++.-|...+..+.++|+
T Consensus 525 ~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~e 604 (777)
T KOG1128|consen 525 LGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFE 604 (777)
T ss_pred ccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHH
Confidence 356666778888888888888865432211 0 110 0 0000 111222345679999999999999
Q ss_pred HHHHHHHhhc
Q 024876 251 EAIGQCSLVS 260 (261)
Q Consensus 251 ~ai~~c~~aL 260 (261)
+|+..|.+-+
T Consensus 605 da~~A~~rll 614 (777)
T KOG1128|consen 605 DAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 200
>PRK14574 hmsH outer membrane protein; Provisional
Probab=72.21 E-value=7.9 Score=39.04 Aligned_cols=79 Identities=9% Similarity=-0.107 Sum_probs=50.0
Q ss_pred cccchhhHHhhhhhhHHHHHHHHHHHHHhhcccccc-----------ccchhHHHHHH------HhhhhhhhHHHHHHHH
Q 024876 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF-----------QLFGKYRDMAL------AVKNPCHLNMAACLLK 245 (261)
Q Consensus 183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~-----------~~~~~~~~~~~------~l~~~~~~N~A~c~lK 245 (261)
......+-..|++|+|..|+..|+++++.-....+. +..++-...++ ......+..+|..+..
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN 114 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 356677788899999999999999999765442100 00011111111 1112344455778888
Q ss_pred hhCHHHHHHHHHhhcC
Q 024876 246 LKRYEEAIGQCSLVSK 261 (261)
Q Consensus 246 l~~~~~ai~~c~~aL~ 261 (261)
+++|+.|+..+.++|+
T Consensus 115 ~gdyd~Aiely~kaL~ 130 (822)
T PRK14574 115 EKRWDQALALWQSSLK 130 (822)
T ss_pred cCCHHHHHHHHHHHHh
Confidence 8999999998888764
No 201
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.41 E-value=14 Score=30.54 Aligned_cols=58 Identities=22% Similarity=0.210 Sum_probs=44.5
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 258 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~ 258 (261)
+.+..++-.++|..|...-+.++..-.+ ..++..+-+++|.+++.++.+++|+...+.
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~D--------------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKD--------------ENLKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchh--------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 4456677788888888888877754221 466778889999999999999999986553
No 202
>PRK14574 hmsH outer membrane protein; Provisional
Probab=70.74 E-value=10 Score=38.29 Aligned_cols=57 Identities=11% Similarity=0.075 Sum_probs=42.6
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
..|..+...|+|..|+..|++++..-... ..++.-+++.++.++++.+|+..+.+++
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n-----------------~~~l~gLa~~y~~~~q~~eAl~~l~~l~ 163 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTN-----------------PDLISGMIMTQADAGRGGVVLKQATELA 163 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----------------HHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence 33556667799999999999999864321 1233456888889999999999888764
No 203
>PRK04841 transcriptional regulator MalT; Provisional
Probab=70.29 E-value=11 Score=37.99 Aligned_cols=28 Identities=11% Similarity=-0.126 Sum_probs=23.2
Q ss_pred hhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 233 NPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 233 ~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
..+++|+|.+++..|++..|...+.+++
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al 558 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAF 558 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3467889999999999999999888765
No 204
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=69.91 E-value=4.9 Score=38.64 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=12.1
Q ss_pred hHHhhhhhhHHHHHHHHHHHHHh
Q 024876 189 GNALFKEEKLEEAMQQYEMAIAY 211 (261)
Q Consensus 189 Gn~~fk~~~~~~A~~~Y~kal~~ 211 (261)
|..+.|+++|..|.-.|++|+.+
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~I 518 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEI 518 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcC
Confidence 44445555555555555555543
No 205
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=69.54 E-value=9.4 Score=35.15 Aligned_cols=78 Identities=18% Similarity=0.141 Sum_probs=51.0
Q ss_pred cccchhhHHhhhhhhHHHHHHHHHHHHHhhcccccc---------ccchh--------HHHHHHHhhhhhhhHHHHHHHH
Q 024876 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF---------QLFGK--------YRDMALAVKNPCHLNMAACLLK 245 (261)
Q Consensus 183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~---------~~~~~--------~~~~~~~l~~~~~~N~A~c~lK 245 (261)
...--.|..+|-+++|.+|+..-.|+|+.-....+- ..... +-..+...++-||--+-.||+-
T Consensus 301 ~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA 380 (564)
T KOG1174|consen 301 SHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA 380 (564)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh
Confidence 344456777788888888888888877653321110 00000 0112234557789999999999
Q ss_pred hhCHHHHHHHHHhhc
Q 024876 246 LKRYEEAIGQCSLVS 260 (261)
Q Consensus 246 l~~~~~ai~~c~~aL 260 (261)
.+.+++|...++.++
T Consensus 381 ~~~~kEA~~~An~~~ 395 (564)
T KOG1174|consen 381 QKRFKEANALANWTI 395 (564)
T ss_pred hchHHHHHHHHHHHH
Confidence 999999999998775
No 206
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=68.67 E-value=13 Score=27.64 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=18.0
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHHh
Q 024876 188 DGNALFKEEKLEEAMQQYEMAIAY 211 (261)
Q Consensus 188 ~Gn~~fk~~~~~~A~~~Y~kal~~ 211 (261)
++..+|.+||+.+|++.-+..+..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~ 25 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISR 25 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHH
Confidence 456788888888888877777644
No 207
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=67.96 E-value=6.2 Score=30.54 Aligned_cols=29 Identities=17% Similarity=0.350 Sum_probs=24.9
Q ss_pred hhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 233 NPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 233 ~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
..|..=+|..|.++++|..++.+|+.-|+
T Consensus 71 Re~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 71 RECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 35777799999999999999999987663
No 208
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=65.23 E-value=15 Score=33.50 Aligned_cols=58 Identities=22% Similarity=0.105 Sum_probs=46.0
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
.-..|.-+++.++|..|...|++++..-.. ...+.-+|.++-++|+.++|.....++|
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~~~P~------------------~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALKQRPD------------------AYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334578888999999999999999975221 1345569999999999999999988876
No 209
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=65.06 E-value=9.2 Score=22.52 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=21.7
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHHhhc
Q 024876 188 DGNALFKEEKLEEAMQQYEMAIAYMG 213 (261)
Q Consensus 188 ~Gn~~fk~~~~~~A~~~Y~kal~~l~ 213 (261)
.|-......+|.+|+.-|++||.+..
T Consensus 7 Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 7 LGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 45566778999999999999998754
No 210
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=65.06 E-value=17 Score=30.96 Aligned_cols=54 Identities=11% Similarity=0.088 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHh-hCHHHHHHHHHhhc
Q 024876 198 LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL-KRYEEAIGQCSLVS 260 (261)
Q Consensus 198 ~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl-~~~~~ai~~c~~aL 260 (261)
-..|...|+.|+.+.....+. ...+++-+.+|.+..|... ++..+|+..+.+|+
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~p---------t~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~af 198 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPP---------THPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 198 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCC---------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 458899999999886542111 1467888999999998875 88999988877764
No 211
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=63.16 E-value=15 Score=34.24 Aligned_cols=55 Identities=25% Similarity=0.244 Sum_probs=42.9
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 258 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~ 258 (261)
..|+-+-|-++..+|+++|++|+.+-+. ....+.-+|..|-+++++.+|.....+
T Consensus 437 aLG~CY~kl~~~~eAiKCykrai~~~dt-----------------e~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 437 ALGECYEKLNRLEEAIKCYKRAILLGDT-----------------EGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcccc-----------------chHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3588888899999999999999976332 135777888888888888888776544
No 212
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.67 E-value=19 Score=30.99 Aligned_cols=61 Identities=18% Similarity=0.128 Sum_probs=48.4
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a 259 (261)
.-+.+-.+|+.|+|..|...|..-++-.... .+-...+.=|.-|++.+++|.+|......+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s--------------~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~ 204 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNS--------------TYTPNAYYWLGESLYAQGDYEDAAYIFARV 204 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--------------cccchhHHHHHHHHHhcccchHHHHHHHHH
Confidence 6777888999999999999999999876543 112246666899999999999998876554
No 213
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=61.47 E-value=19 Score=32.91 Aligned_cols=56 Identities=18% Similarity=0.006 Sum_probs=42.6
Q ss_pred hhhHHhhhhhhHHHHHHHHHH--HHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 187 MDGNALFKEEKLEEAMQQYEM--AIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~k--al~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
..|--+|+.|+|..|...|++ ++..-.. ...+.-++.++.++|+.++|.....++|
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~------------------~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAACKEQLD------------------ANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHHhhcCCC------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 458888999999999999995 4433111 0124467999999999999999888875
No 214
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=60.54 E-value=12 Score=22.00 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 235 CHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 235 ~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
+|.-++-+-+-.++|.+|+.+..++|+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 566777788888899999999998874
No 215
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=60.37 E-value=12 Score=36.14 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=16.6
Q ss_pred hhhhHHHHHHHHHHHHHhh
Q 024876 194 KEEKLEEAMQQYEMAIAYM 212 (261)
Q Consensus 194 k~~~~~~A~~~Y~kal~~l 212 (261)
..++|.+|+++|+.|+.+-
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~ 105 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIE 105 (700)
T ss_pred hhhhHHHHHHHHHHHHhcC
Confidence 4689999999999999864
No 216
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=59.58 E-value=33 Score=30.22 Aligned_cols=41 Identities=15% Similarity=-0.040 Sum_probs=36.9
Q ss_pred cchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 220 LFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 220 ~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
..+.+++.++.+..+++.-.|..|++.+.+.+|+..|..+|
T Consensus 266 Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~l 306 (361)
T COG3947 266 WAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRAL 306 (361)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 34567888999999999999999999999999999999987
No 217
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.38 E-value=27 Score=30.02 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=19.0
Q ss_pred hHHhhhhhhHHHHHHHHHHHHHhhcc
Q 024876 189 GNALFKEEKLEEAMQQYEMAIAYMGD 214 (261)
Q Consensus 189 Gn~~fk~~~~~~A~~~Y~kal~~l~~ 214 (261)
+-...+.-+-+.|+..|++++.++..
T Consensus 117 Aak~lenv~Pd~AlqlYqralavve~ 142 (308)
T KOG1585|consen 117 AAKALENVKPDDALQLYQRALAVVEE 142 (308)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhc
Confidence 34445566777889999999988764
No 218
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.29 E-value=11 Score=37.60 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=29.8
Q ss_pred hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccc
Q 024876 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDD 215 (261)
Q Consensus 182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~ 215 (261)
+.-++.-|+.+|++|+|+.|...|-++|..++..
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s 401 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS 401 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH
Confidence 3456788999999999999999999999998764
No 219
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=59.10 E-value=23 Score=32.76 Aligned_cols=63 Identities=19% Similarity=0.244 Sum_probs=40.5
Q ss_pred cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhh
Q 024876 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK 247 (261)
Q Consensus 183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~ 247 (261)
...-+.|-.+|+.|+|..|+..|+.+|..+.-... .+.++.++++++...|.-=+-.+.+.+.
T Consensus 205 ~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv--~~~~E~~e~~eli~icrEYilgl~iEl~ 267 (422)
T PF06957_consen 205 EERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVV--ESREEEDEAKELIEICREYILGLSIELE 267 (422)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--B--SSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeee--cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444689999999999999999999987643211 2234555666666666555555555443
No 220
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=58.88 E-value=12 Score=24.45 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=26.6
Q ss_pred cccchhhHHhhhhhhHHHHHHHHHHHHHhhc
Q 024876 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMG 213 (261)
Q Consensus 183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~ 213 (261)
.-....|.-+|+.|+|..|+..|.+++....
T Consensus 30 ~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 30 ELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred hhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 3456789999999999999999999997644
No 221
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=57.46 E-value=32 Score=28.40 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=42.3
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a 259 (261)
..||.+-..|+|.+|...|+.++.=+=.. + ..+++-+|.+++-++++..|.....+.
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~---d-------------~a~lLglA~Aqfa~~~~A~a~~tLe~l 150 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAH---D-------------AAMLLGLAQAQFAIQEFAAAQQTLEDL 150 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCC---C-------------HHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 45788889999999999999998543110 0 256777888888888888877665543
No 222
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.06 E-value=21 Score=34.53 Aligned_cols=74 Identities=16% Similarity=0.084 Sum_probs=48.5
Q ss_pred cccchhhHHhhhhhhHHHHHHHHHHHHHhhcccccccc-chh--HHHHHHHhhhhhhhHHH-HHHHHhhCHHHHHHHH
Q 024876 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-FGK--YRDMALAVKNPCHLNMA-ACLLKLKRYEEAIGQC 256 (261)
Q Consensus 183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~-~~~--~~~~~~~l~~~~~~N~A-~c~lKl~~~~~ai~~c 256 (261)
.+.|+.|....+++++..|..++.+|..+-.-...... .+. -......-+..-.+|+| .|++++|++++|+.-.
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELL 744 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHH
Confidence 35678899999999999999999999766432111111 111 11122223344567777 6999999999998743
No 223
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=55.62 E-value=22 Score=36.19 Aligned_cols=58 Identities=14% Similarity=-0.012 Sum_probs=46.4
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
+.-.|.-+=+.|++.+|...|.++|++-.. ...+++|+|-.|... +.++|+....+|+
T Consensus 119 l~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-----------------n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 119 LRTLAEAYAKLNENKKLKGVWERLVKADRD-----------------NPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCcc-----------------cHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 344455555779999999999999987321 247999999999999 9999999998886
No 224
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=53.82 E-value=54 Score=25.53 Aligned_cols=48 Identities=15% Similarity=0.065 Sum_probs=34.0
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhC
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~ 248 (261)
..|-.+|++++|..|+..|.+=|++-..... .-=++.=+++|++++..
T Consensus 52 ~l~yayy~~~~y~~A~a~~~rFirLhP~hp~--------------vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 52 DLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN--------------VDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCCC--------------ccHHHHHHHHHHHHHhh
Confidence 3467789999999999999999987543211 01245557778877765
No 225
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=53.29 E-value=25 Score=33.18 Aligned_cols=65 Identities=22% Similarity=0.187 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHHhhccccccccc----hhHHH--H--HHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 196 EKLEEAMQQYEMAIAYMGDDFMFQLF----GKYRD--M--ALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 196 ~~~~~A~~~Y~kal~~l~~~~~~~~~----~~~~~--~--~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
....+|.+.|++|++.-+........ ....+ . --....-+...+|+|.-|+|+.++||+...+.|
T Consensus 214 ~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLl 286 (539)
T PF04184_consen 214 STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLL 286 (539)
T ss_pred cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 44668888888888776543221110 01111 0 112234456789999999999999999888765
No 226
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.60 E-value=31 Score=32.54 Aligned_cols=78 Identities=18% Similarity=0.181 Sum_probs=48.0
Q ss_pred cccchhhHHhhhhhhHHHHHHHHHHHHHhhccc-ccc-------------ccchhHHHHH---HHhhhhhhhHHHHHHHH
Q 024876 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDD-FMF-------------QLFGKYRDMA---LAVKNPCHLNMAACLLK 245 (261)
Q Consensus 183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~-~~~-------------~~~~~~~~~~---~~l~~~~~~N~A~c~lK 245 (261)
....-+|.-.|-.++|..|+.-|++|+.+-... +++ .......++. -.-..-+|+=.|..+.-
T Consensus 395 dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD 474 (606)
T KOG0547|consen 395 DVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD 474 (606)
T ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh
Confidence 345667889999999999999999999864331 110 0000111111 11223356666777777
Q ss_pred hhCHHHHHHHHHhhc
Q 024876 246 LKRYEEAIGQCSLVS 260 (261)
Q Consensus 246 l~~~~~ai~~c~~aL 260 (261)
+++|+.|+...+.|+
T Consensus 475 qqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 475 QQQFDKAVKQYDKAI 489 (606)
T ss_pred HHhHHHHHHHHHHHH
Confidence 777888877777765
No 227
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=51.20 E-value=37 Score=29.29 Aligned_cols=59 Identities=22% Similarity=0.179 Sum_probs=45.2
Q ss_pred hhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhh-CHHHHHHHHHhhc
Q 024876 193 FKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-RYEEAIGQCSLVS 260 (261)
Q Consensus 193 fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~-~~~~ai~~c~~aL 260 (261)
.++|++..|...|.|+-....... . .........++|.+...++.+ +|..|+..-.+|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~-----~----~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~ 63 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLD-----P----DMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAY 63 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCC-----c----HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 578999999999999988764211 1 112445668889999999999 9999988777664
No 228
>PRK04841 transcriptional regulator MalT; Provisional
Probab=50.91 E-value=39 Score=34.11 Aligned_cols=60 Identities=12% Similarity=-0.000 Sum_probs=45.7
Q ss_pred hHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 189 Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
|.-++..|+|..|...+.+++..+... . .......+++++.++..+|++.+|...+.+++
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~------~------~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al 518 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELPLT------W------YYSRIVATSVLGEVHHCKGELARALAMMQQTE 518 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCc------c------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456678999999999999998753221 0 11233467889999999999999999988875
No 229
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=50.89 E-value=69 Score=28.05 Aligned_cols=74 Identities=19% Similarity=0.199 Sum_probs=49.5
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHhhccccc--------------cccchhHHHHH------HHhhhhhhhHHHHHHHHh
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFM--------------FQLFGKYRDMA------LAVKNPCHLNMAACLLKL 246 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~--------------~~~~~~~~~~~------~~l~~~~~~N~A~c~lKl 246 (261)
-.|-.++..+++..|..-|.+|+++...... ...+.+-..-+ ..-.+..++=+|..++..
T Consensus 161 ~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~ 240 (287)
T COG4235 161 LLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQ 240 (287)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc
Confidence 3477889999999999999999998755311 01111111222 222344555688999999
Q ss_pred hCHHHHHHHHHhhc
Q 024876 247 KRYEEAIGQCSLVS 260 (261)
Q Consensus 247 ~~~~~ai~~c~~aL 260 (261)
++|.+|+..-...|
T Consensus 241 g~~~~A~~~Wq~lL 254 (287)
T COG4235 241 GDYAEAAAAWQMLL 254 (287)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999998765544
No 230
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=49.77 E-value=46 Score=25.39 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 234 PCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 234 ~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
..+.+++.++...+.+..|+.....++
T Consensus 203 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ 229 (291)
T COG0457 203 EALLNLGLLYLKLGKYEEALEYYEKAL 229 (291)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 346677777777777777777766654
No 231
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=49.53 E-value=28 Score=28.83 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=38.6
Q ss_pred hhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHH
Q 024876 192 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI 253 (261)
Q Consensus 192 ~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai 253 (261)
+|-+.+-.+|+..|-+++.+..... .+...++.-||..++++++++.|=
T Consensus 150 yY~krD~~Kt~~ll~~~L~l~~~~~-------------~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 150 YYTKRDPEKTIQLLLRALELSNPDD-------------NFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHccCHHHHHHHHHHHHHhcCCCC-------------CCCHHHHHHHHHHHHHhcchhhhh
Confidence 4567788899999999999876531 333568888999999999999873
No 232
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=49.48 E-value=59 Score=27.53 Aligned_cols=63 Identities=10% Similarity=0.023 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 199 EEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 199 ~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
..|+..+++.++....+.-..+...-...++.....--++.|.-|+|.+.|..|+..+..+|+
T Consensus 141 ~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~ 203 (243)
T PRK10866 141 RAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLR 203 (243)
T ss_pred HHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 467777777777665431111111222345555555667899999999999999999988863
No 233
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=49.36 E-value=52 Score=29.50 Aligned_cols=56 Identities=11% Similarity=0.111 Sum_probs=38.3
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 258 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~ 258 (261)
..|+-...+|+|..|++.|.+++.-- ..+...+..-+..||.++|+..+.+..-..
T Consensus 219 ~lG~v~~~~g~y~~AV~~~e~v~eQn----------------~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 219 ILGRVELAKGDYQKAVEALERVLEQN----------------PEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred hhhHHHHhccchHHHHHHHHHHHHhC----------------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34777778888888888888877542 122234555677899999988877665443
No 234
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=47.30 E-value=39 Score=30.80 Aligned_cols=60 Identities=18% Similarity=0.126 Sum_probs=40.9
Q ss_pred hhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 194 KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 194 k~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
.-++|.+|+-.-.+|..+.......+. -...+...++-||..+-++|+.-+|.+.|.+|.
T Consensus 174 ~l~D~~Kal~f~~kA~~lv~s~~l~d~-------~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~ 233 (518)
T KOG1941|consen 174 QLKDYEKALFFPCKAAELVNSYGLKDW-------SLKYRAMSLYHMAVALRLLGRLGDAMECCEEAM 233 (518)
T ss_pred HHHhhhHHhhhhHhHHHHHHhcCcCch-------hHHHHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 456666666666666665543211111 134456677889999999999999999999874
No 235
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=47.28 E-value=39 Score=32.23 Aligned_cols=28 Identities=32% Similarity=0.118 Sum_probs=23.9
Q ss_pred hhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 233 NPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 233 ~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
...+--+|.|++++|++++|...+..-|
T Consensus 38 ~~~~E~rA~ll~kLg~~~eA~~~y~~Li 65 (517)
T PF12569_consen 38 LAVLEKRAELLLKLGRKEEAEKIYRELI 65 (517)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4677789999999999999999887655
No 236
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=47.23 E-value=31 Score=23.47 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=18.5
Q ss_pred hhHHHHHHhhcCCCCcEEEEEEeC
Q 024876 108 EMTGLAIGVSSMKAGEHALLHVGW 131 (261)
Q Consensus 108 ~i~gle~~l~~Mk~Ge~~~~~i~~ 131 (261)
+...|-.||.+.++|+.+.+.+|.
T Consensus 42 ~~SPLG~ALlG~~~Gd~v~~~~~~ 65 (77)
T PF01272_consen 42 IDSPLGKALLGKKVGDEVEVELPG 65 (77)
T ss_dssp TTSHHHHHHTT-BTT-EEEEEETT
T ss_pred ecCHHHHHhcCCCCCCEEEEEeCC
Confidence 345788999999999999998765
No 237
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=46.09 E-value=61 Score=20.51 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=19.0
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHHh
Q 024876 188 DGNALFKEEKLEEAMQQYEMAIAY 211 (261)
Q Consensus 188 ~Gn~~fk~~~~~~A~~~Y~kal~~ 211 (261)
.+-.+||.|+|..|.+.-..+|+.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh
Confidence 355679999999999998888875
No 238
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=46.04 E-value=51 Score=31.16 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=41.3
Q ss_pred chhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHH
Q 024876 186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIG 254 (261)
Q Consensus 186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~ 254 (261)
+..+.-+.|.|+.++|++.|+..++.+... -...++.|+.-|++-++.|.++-.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~---------------~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNL---------------DNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCcc---------------chhhHHHHHHHHHHhcCCHHHHHH
Confidence 445677778899999999999998765421 123588899999999999887754
No 239
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=45.50 E-value=53 Score=26.74 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhC
Q 024876 196 EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248 (261)
Q Consensus 196 ~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~ 248 (261)
.-|..|+.+|+.||.+-.. +...+.|++.+|..++.
T Consensus 49 ~miedAisK~eeAL~I~P~-----------------~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 49 KMIEDAISKFEEALKINPN-----------------KHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCc-----------------hHHHHHHHHHHHHHHHh
Confidence 4577888888888876332 23456666666666553
No 240
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=44.99 E-value=36 Score=25.12 Aligned_cols=45 Identities=11% Similarity=0.182 Sum_probs=38.1
Q ss_pred cCCCchhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhcc
Q 024876 170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD 214 (261)
Q Consensus 170 ~~~l~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~ 214 (261)
.+..+...-+..+..+...|..++..|+...|.-.|-|.+.+++.
T Consensus 26 ~~~~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~k 70 (115)
T PF08969_consen 26 DKNIPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEK 70 (115)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 456667778899999999999999999999999999999999843
No 241
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=44.27 E-value=26 Score=32.28 Aligned_cols=54 Identities=19% Similarity=0.156 Sum_probs=35.9
Q ss_pred HHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 205 YEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 205 Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
|..||+.++.... +. ...-..+-.-.++++..++-|||.+++|.+|+..-+.+|
T Consensus 138 Y~~Alk~l~~idl-~~-~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 138 YYQALKVLENIDL-NK-KGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhhccCc-cc-chhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666654311 00 001123344557788999999999999999999888775
No 242
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.27 E-value=40 Score=29.32 Aligned_cols=28 Identities=32% Similarity=0.285 Sum_probs=24.1
Q ss_pred hhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 234 PCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 234 ~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
.+++-+|.|++.+++|.+|......||+
T Consensus 208 ~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 208 LLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred HHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4567799999999999999998888773
No 243
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.81 E-value=73 Score=32.40 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=28.7
Q ss_pred hhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhh
Q 024876 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM 212 (261)
Q Consensus 179 ~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l 212 (261)
+....+.-++|=.+++.|+|..|+++|+.+|-.+
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i 1021 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSI 1021 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhhe
Confidence 5667777788999999999999999999887544
No 244
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=43.04 E-value=49 Score=33.29 Aligned_cols=32 Identities=25% Similarity=0.152 Sum_probs=28.1
Q ss_pred hcccchhhHHhhhhhhHHHHHHHHHHHHHhhc
Q 024876 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMG 213 (261)
Q Consensus 182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~ 213 (261)
+..+-..+|.+|-+|++..|.+....+|+...
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp 170 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDP 170 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc
Confidence 56777889999999999999999999998754
No 245
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=42.63 E-value=40 Score=19.46 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=18.0
Q ss_pred chhhHHhhhhhhHHHHHHHHH--HHHH
Q 024876 186 KMDGNALFKEEKLEEAMQQYE--MAIA 210 (261)
Q Consensus 186 K~~Gn~~fk~~~~~~A~~~Y~--kal~ 210 (261)
...|-.++.+|+|..|+..|+ -+..
T Consensus 5 y~~a~~~y~~~ky~~A~~~~~y~~l~~ 31 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHFFQYAFLCA 31 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 345778899999999999944 5443
No 246
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=42.58 E-value=58 Score=33.27 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 235 CHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 235 ~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
++..+|.||-++|++++|.....++|+
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~ 144 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVK 144 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 677899999999999999999988874
No 247
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=42.11 E-value=67 Score=28.80 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=26.2
Q ss_pred cCCCchhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHH
Q 024876 170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIA 210 (261)
Q Consensus 170 ~~~l~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~ 210 (261)
..+++.++|+- .+-+.|..+...|-|++|...|..-..
T Consensus 98 spdlT~~qr~l---Al~qL~~Dym~aGl~DRAE~~f~~L~d 135 (389)
T COG2956 98 SPDLTFEQRLL---ALQQLGRDYMAAGLLDRAEDIFNQLVD 135 (389)
T ss_pred CCCCchHHHHH---HHHHHHHHHHHhhhhhHHHHHHHHHhc
Confidence 34556665543 345678888899999999888865543
No 248
>PF12063 DUF3543: Domain of unknown function (DUF3543); InterPro: IPR022708 This domain belonging to serine/threonine-protein kinases is functionally uncharacterised. This domain is found in eukaryotes. It is typically between 217 to 291 amino acids in length and is found associated with PF00069 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0004674 protein serine/threonine kinase activity
Probab=42.04 E-value=46 Score=28.25 Aligned_cols=56 Identities=25% Similarity=0.233 Sum_probs=39.3
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhhccccccc-------cchhHHHHHHHhhhhhhhHHHHHHHHh
Q 024876 190 NALFKEEKLEEAMQQYEMAIAYMGDDFMFQ-------LFGKYRDMALAVKNPCHLNMAACLLKL 246 (261)
Q Consensus 190 n~~fk~~~~~~A~~~Y~kal~~l~~~~~~~-------~~~~~~~~~~~l~~~~~~N~A~c~lKl 246 (261)
+++|.. ++..+...|..|+.+|....... ..++++..+..+...+..-+..+.-|+
T Consensus 175 ~El~g~-~~~~ce~~Y~tA~~lLe~Ll~~~~~~~~~~~~~~Dr~~i~k~i~sI~~RL~~Lr~k~ 237 (238)
T PF12063_consen 175 DELFGE-NLEGCEQRYETAIWLLEALLDDDDLEEENPLDEEDREIIKKYIDSIENRLSALRKKM 237 (238)
T ss_pred HHHhCc-CHhHHHHHHHHHHHHHHHHHhHhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455532 88999999999999886543333 455677778888777777777666553
No 249
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=41.87 E-value=44 Score=17.86 Aligned_cols=25 Identities=8% Similarity=-0.112 Sum_probs=19.9
Q ss_pred hhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876 234 PCHLNMAACLLKLKRYEEAIGQCSL 258 (261)
Q Consensus 234 ~~~~N~A~c~lKl~~~~~ai~~c~~ 258 (261)
..|+.+..++.+.++++.|....+.
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~ 26 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDE 26 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3577888999999999998876543
No 250
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=41.70 E-value=34 Score=17.80 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHhhCHHHHHHHHHh
Q 024876 235 CHLNMAACLLKLKRYEEAIGQCSL 258 (261)
Q Consensus 235 ~~~N~A~c~lKl~~~~~ai~~c~~ 258 (261)
.|+++-.+|.+.+++++|..-..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~ 25 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDE 25 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHH
Confidence 577888999999999999887654
No 251
>PF15469 Sec5: Exocyst complex component Sec5
Probab=41.57 E-value=24 Score=28.32 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=21.8
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhhccc
Q 024876 190 NALFKEEKLEEAMQQYEMAIAYMGDD 215 (261)
Q Consensus 190 n~~fk~~~~~~A~~~Y~kal~~l~~~ 215 (261)
..+.++|+|..|++-|.+|..++...
T Consensus 94 ~~~i~~~dy~~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 94 RECIKKGDYDQAINDYKKAKSLFEKY 119 (182)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 34467999999999999999988653
No 252
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=41.48 E-value=39 Score=23.13 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=34.3
Q ss_pred chhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhc
Q 024876 174 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMG 213 (261)
Q Consensus 174 ~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~ 213 (261)
..++.+..+....+.|..++++|++..|+.++.=|-.+|+
T Consensus 27 ~a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~GwLD 66 (75)
T PF04010_consen 27 AAEEILEMAESYLEDGKYFLEKGDYVNALACFSYAHGWLD 66 (75)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999888877765
No 253
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=40.67 E-value=60 Score=25.48 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=20.2
Q ss_pred hhHHHHHHhhcCCCCcEEEEEEeC
Q 024876 108 EMTGLAIGVSSMKAGEHALLHVGW 131 (261)
Q Consensus 108 ~i~gle~~l~~Mk~Ge~~~~~i~~ 131 (261)
+...|-.+|.+.++|+.+.|.+|.
T Consensus 122 ~~SPlG~aLlGk~~Gd~v~~~~p~ 145 (157)
T PRK00226 122 IESPIARALIGKKVGDTVEVTTPG 145 (157)
T ss_pred cCChHHHHHhCCCCCCEEEEEcCC
Confidence 445788999999999999988755
No 254
>PF06069 PerC: PerC transcriptional activator; InterPro: IPR024684 This family includes PerC, which is a transcriptional activator of EaeA/BfpA expression in enteropathogenic bacteria []. It also includes a number of uncharacterised proteins, such as Orf40 from bacteriophage SfV.
Probab=39.38 E-value=73 Score=22.73 Aligned_cols=25 Identities=8% Similarity=0.040 Sum_probs=20.1
Q ss_pred hHHhhhhhhHHHHHHHHHHHHHhhc
Q 024876 189 GNALFKEEKLEEAMQQYEMAIAYMG 213 (261)
Q Consensus 189 Gn~~fk~~~~~~A~~~Y~kal~~l~ 213 (261)
+..+=.+|.|.+|...|..++....
T Consensus 7 Ae~LE~kGl~RRAA~rW~evm~~~~ 31 (90)
T PF06069_consen 7 AEELEAKGLWRRAATRWLEVMDLAE 31 (90)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHcC
Confidence 3445578999999999999998765
No 255
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=39.33 E-value=25 Score=32.78 Aligned_cols=56 Identities=16% Similarity=0.115 Sum_probs=44.8
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a 259 (261)
.++-.++|.++|..|++=..+|+++- .-.+++|.-+|.+++++++|.+|+.+...+
T Consensus 43 nRa~a~lK~e~~~~Al~Da~kaie~d-----------------P~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~ 98 (476)
T KOG0376|consen 43 NRALAHLKVESFGGALHDALKAIELD-----------------PTYIKAYVRRGTAVMALGEFKKALLDLEKV 98 (476)
T ss_pred hhhhhheeechhhhHHHHHHhhhhcC-----------------chhhheeeeccHHHHhHHHHHHHHHHHHHh
Confidence 34456688999999999888888752 234689999999999999999999877654
No 256
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.58 E-value=51 Score=34.11 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=37.1
Q ss_pred ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (261)
Q Consensus 184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a 259 (261)
.+..-|..+|..+.|+.|.-.|... +-+.-+|.....+|+|+.|+..+++|
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~v-------------------------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSNV-------------------------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHHh-------------------------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4556688888888887776666433 33455788888899999998888776
No 257
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.74 E-value=1.1e+02 Score=29.00 Aligned_cols=63 Identities=14% Similarity=0.028 Sum_probs=45.3
Q ss_pred hhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876 194 KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (261)
Q Consensus 194 k~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a 259 (261)
-+|-|+.|.+.-.++|...+.....+ -....+..+++.++=|+++|.+-.+++.+|+..-..+
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d---~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm 349 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQAD---LMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDM 349 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhccccc---chhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34666777777778887654332111 1345677888899999999999999999999876554
No 258
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=37.51 E-value=91 Score=28.37 Aligned_cols=35 Identities=6% Similarity=-0.004 Sum_probs=22.4
Q ss_pred hHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHh
Q 024876 177 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAY 211 (261)
Q Consensus 177 e~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~ 211 (261)
.+...+.+.-..|-..+-.|+|..|.+.-.++-+.
T Consensus 79 rr~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~ 113 (398)
T PRK10747 79 RKRRRARKQTEQALLKLAEGDYQQVEKLMTRNADH 113 (398)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 34455555566666667778888777666665543
No 259
>PF13041 PPR_2: PPR repeat family
Probab=36.42 E-value=41 Score=20.31 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=18.9
Q ss_pred HHhhhhhhHHHHHHHHHHHHHh
Q 024876 190 NALFKEEKLEEAMQQYEMAIAY 211 (261)
Q Consensus 190 n~~fk~~~~~~A~~~Y~kal~~ 211 (261)
..+++.|++.+|.+.|++..+.
T Consensus 11 ~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 11 SGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHCcCHHHHHHHHHHHHHc
Confidence 4578999999999999998864
No 260
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=35.93 E-value=1.1e+02 Score=29.43 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=22.1
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHHhhc
Q 024876 188 DGNALFKEEKLEEAMQQYEMAIAYMG 213 (261)
Q Consensus 188 ~Gn~~fk~~~~~~A~~~Y~kal~~l~ 213 (261)
.|.-+|++++|++|++.|..|-..+.
T Consensus 324 ~gg~~yR~~~~~eA~~~Wa~aa~Vi~ 349 (618)
T PF05053_consen 324 LGGYYYRHKRYREALRSWAEAADVIR 349 (618)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48889999999999999999977764
No 261
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=35.27 E-value=65 Score=26.79 Aligned_cols=60 Identities=20% Similarity=0.089 Sum_probs=41.8
Q ss_pred HhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 191 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 191 ~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
.+-....+..|+..|..|+-....... -...+..+++.+|.+|--+++...-.....+||
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~----------~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al 145 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKE----------KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKAL 145 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCC----------CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 555677899999999999976432110 022456789999999999998665555555554
No 262
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=34.16 E-value=1.7e+02 Score=23.06 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=19.8
Q ss_pred hhHHHHHHhhcCCCCcEEEEEEeC
Q 024876 108 EMTGLAIGVSSMKAGEHALLHVGW 131 (261)
Q Consensus 108 ~i~gle~~l~~Mk~Ge~~~~~i~~ 131 (261)
+...|-.+|.+-++|+.+.+..|.
T Consensus 121 ~~SPlG~ALlGk~vGD~v~v~~p~ 144 (158)
T PRK05892 121 ADSPLGQALAGHQAGDTVTYSTPQ 144 (158)
T ss_pred cCCHHHHHHhCCCCCCEEEEEcCC
Confidence 345688999999999999988655
No 263
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=34.15 E-value=1.2e+02 Score=27.72 Aligned_cols=84 Identities=7% Similarity=-0.037 Sum_probs=50.2
Q ss_pred hHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc---------c--ccchhHHHHHHH----hh---hhhhhH
Q 024876 177 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM---------F--QLFGKYRDMALA----VK---NPCHLN 238 (261)
Q Consensus 177 e~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~---------~--~~~~~~~~~~~~----l~---~~~~~N 238 (261)
.+...+.+.-.+|--.+..|+|..|.+...++.+..+.... . +..+.-...+.. .. +.+..-
T Consensus 79 r~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~ 158 (409)
T TIGR00540 79 RKRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIA 158 (409)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHH
Confidence 34556666677788888999999999999888876543100 0 000110111111 00 112333
Q ss_pred HHHHHHHhhCHHHHHHHHHhhc
Q 024876 239 MAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 239 ~A~c~lKl~~~~~ai~~c~~aL 260 (261)
+|..++..++|+.|+......+
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~ 180 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLL 180 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5777888899999988877654
No 264
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=34.02 E-value=1.4e+02 Score=24.85 Aligned_cols=66 Identities=18% Similarity=0.069 Sum_probs=40.6
Q ss_pred ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
-.+..|+..-...=+..|+..|.+|+..-.. +....++ ..++.=+|..+.++|++++|+...++++
T Consensus 127 lyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~--~~~~~~~---------~~l~YLigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 127 LYRDLGDEENEKRFLRKALEFYEEAYENEDF--PIEGMDE---------ATLLYLIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HhhccCCHHHHHHHHHHHHHHHHHHHHhCcC--CCCCchH---------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3445555444455566777777777754322 1110011 1244448889999999999999988876
No 265
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=33.84 E-value=1.1e+02 Score=23.85 Aligned_cols=25 Identities=12% Similarity=0.029 Sum_probs=20.9
Q ss_pred chhHHHHHHhhcCCCCcEEEEEEeC
Q 024876 107 KEMTGLAIGVSSMKAGEHALLHVGW 131 (261)
Q Consensus 107 ~~i~gle~~l~~Mk~Ge~~~~~i~~ 131 (261)
.+...|-.+|.+.++|+.+.+.+|.
T Consensus 116 S~~SPlG~ALlG~~~Gd~v~v~~p~ 140 (151)
T TIGR01462 116 SIDSPLGKALIGKKVGDVVEVQTPK 140 (151)
T ss_pred cCCCHHHHHHcCCCCCCEEEEEeCC
Confidence 3456788999999999999988765
No 266
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=33.66 E-value=65 Score=21.26 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=17.7
Q ss_pred HHHHHHhhcCCCCcEEEEEEeCC
Q 024876 110 TGLAIGVSSMKAGEHALLHVGWE 132 (261)
Q Consensus 110 ~gle~~l~~Mk~Ge~~~~~i~~~ 132 (261)
+-|..|+..|..||++.+++.+.
T Consensus 35 ~El~sA~~HlH~GEkA~V~FkS~ 57 (68)
T PF09122_consen 35 AELKSALVHLHIGEKAQVFFKSQ 57 (68)
T ss_dssp HHHHHHHTT-BTT-EEEEEETTS
T ss_pred HHHHHHHHHhhcCceeEEEEecC
Confidence 56888999999999999987653
No 267
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=33.50 E-value=89 Score=29.06 Aligned_cols=51 Identities=10% Similarity=0.062 Sum_probs=36.6
Q ss_pred hhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 193 FKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 193 fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
-..|++..++...+++|..... ..+|.-++....-.+++++|..+...||.
T Consensus 449 ~~Eg~~~D~i~LLe~~L~~~~D------------------~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 449 QVEGPTKDIIKLLEKHLIIFPD------------------VNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HhhCccchHHHHHHHHHhhccc------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3455556666666655554332 26788889999999999999999998874
No 268
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=33.23 E-value=1e+02 Score=24.29 Aligned_cols=24 Identities=13% Similarity=0.110 Sum_probs=20.0
Q ss_pred hhHHHHHHhhcCCCCcEEEEEEeC
Q 024876 108 EMTGLAIGVSSMKAGEHALLHVGW 131 (261)
Q Consensus 108 ~i~gle~~l~~Mk~Ge~~~~~i~~ 131 (261)
+...|-.+|.+-++|+.+.+.+|.
T Consensus 119 ~~SPlG~ALlGk~~GD~v~v~~p~ 142 (156)
T TIGR01461 119 IDSPLARALLKKEVGDEVVVNTPA 142 (156)
T ss_pred CCCHHHHHHcCCCCCCEEEEEcCC
Confidence 345788999999999999987655
No 269
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=33.03 E-value=1.3e+02 Score=28.38 Aligned_cols=73 Identities=22% Similarity=0.089 Sum_probs=46.8
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHhhccccc-cccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-FQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
..|+.+++.|++.+|++.-++.+.-...+.. +..- -+--....-....+.++|-.|.-.|+|++|+.....|.
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~L-Aqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLL-AQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHH-HHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3489999999999888887777754332210 0000 00011223344567888888899999999998877653
No 270
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=32.65 E-value=52 Score=25.89 Aligned_cols=71 Identities=20% Similarity=0.183 Sum_probs=45.3
Q ss_pred hhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccc-cccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDD-FMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 258 (261)
Q Consensus 180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~-~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~ 258 (261)
..........|.+++.|+...|...-+-+-.-+... ....+. ...-..|.|..+++.|+|.+|...-..
T Consensus 73 ~~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~----------~~~~av~~A~~ll~~~k~~eA~~aL~~ 142 (155)
T PF10938_consen 73 PEKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLA----------QTPAAVKQAAALLDEGKYYEANAALKQ 142 (155)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHH----------HHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHH----------hhHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444566778899999999999987655443222211 000100 123567899999999999999888777
Q ss_pred hc
Q 024876 259 VS 260 (261)
Q Consensus 259 aL 260 (261)
|+
T Consensus 143 A~ 144 (155)
T PF10938_consen 143 AL 144 (155)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 271
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=32.18 E-value=78 Score=16.62 Aligned_cols=25 Identities=24% Similarity=0.130 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876 235 CHLNMAACLLKLKRYEEAIGQCSLV 259 (261)
Q Consensus 235 ~~~N~A~c~lKl~~~~~ai~~c~~a 259 (261)
.|+.+-.+|.+.+++++|+....+.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M 26 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEM 26 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4667778899999999998876653
No 272
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=30.78 E-value=39 Score=22.60 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=16.2
Q ss_pred chhhHHhhhhhhHHHHHHHHHHH
Q 024876 186 KMDGNALFKEEKLEEAMQQYEMA 208 (261)
Q Consensus 186 K~~Gn~~fk~~~~~~A~~~Y~ka 208 (261)
..+=|.+|..|+|.+|.+.--.+
T Consensus 10 ~~~F~~l~~~g~y~eAA~~AA~s 32 (66)
T PF13838_consen 10 VQQFNELFSQGQYEEAAKVAANS 32 (66)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHhC
Confidence 34558899999999998765433
No 273
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=29.18 E-value=1e+02 Score=26.44 Aligned_cols=59 Identities=19% Similarity=0.131 Sum_probs=43.8
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
..+++-.+|+.++|..+..--++|+.+..+ .++.+.=+.+|.+..+.|.+||....+|+
T Consensus 47 ~tnralchlk~~~~~~v~~dcrralql~~N-----------------~vk~h~flg~~~l~s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 47 YTNRALCHLKLKHWEPVEEDCRRALQLDPN-----------------LVKAHYFLGQWLLQSKGYDEAIKVLQRAY 105 (284)
T ss_pred hhhHHHHHHHhhhhhhhhhhHHHHHhcChH-----------------HHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 344555667778888888888888876543 24566668899999999999999887773
No 274
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=28.84 E-value=73 Score=24.06 Aligned_cols=40 Identities=20% Similarity=0.136 Sum_probs=32.9
Q ss_pred hhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhcc
Q 024876 175 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD 214 (261)
Q Consensus 175 ~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~ 214 (261)
.+++-......-..|..+..+|++..|+.++-+||..+..
T Consensus 56 ~~~~e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 56 PEEMERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 4556666777788899999999999999999999998754
No 275
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=28.06 E-value=1.7e+02 Score=26.74 Aligned_cols=58 Identities=19% Similarity=0.053 Sum_probs=45.0
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
+...|--+|+++.|.+|...++.|+.+-.. ..-+.=+|-++.++|+..+|-..-.++|
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s------------------~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKLRPS------------------ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCC------------------hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 445688889999999999999999986332 2345568888999999888877766664
No 276
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=27.87 E-value=1.7e+02 Score=26.97 Aligned_cols=28 Identities=25% Similarity=0.147 Sum_probs=23.4
Q ss_pred hhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 233 NPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 233 ~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
..++.-.|..+++.++|+.|+..+.+|.
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av 261 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAV 261 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3456668889999999999999998875
No 277
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=27.82 E-value=1.6e+02 Score=26.82 Aligned_cols=40 Identities=8% Similarity=0.157 Sum_probs=34.3
Q ss_pred hHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhcccc
Q 024876 177 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDF 216 (261)
Q Consensus 177 e~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~ 216 (261)
.+-..+.++-..|+.+++.++|..|...|..|..++...+
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~ 75 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIY 75 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 4556777888899999999999999999999999886543
No 278
>PRK10941 hypothetical protein; Provisional
Probab=27.04 E-value=1.6e+02 Score=25.52 Aligned_cols=55 Identities=18% Similarity=0.131 Sum_probs=39.7
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 258 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~ 258 (261)
..-+.+.+.++|.+|+++-.+.+.+...+. .+ .--++..|.+++.|..|+.+...
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp---------~e--------~RDRGll~~qL~c~~~A~~DL~~ 240 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDP---------YE--------IRDRGLIYAQLDCEHVALSDLSY 240 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCH---------HH--------HHHHHHHHHHcCCcHHHHHHHHH
Confidence 334556789999999999999998754321 11 22378889999999999886553
No 279
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.71 E-value=1.1e+02 Score=29.05 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhC
Q 024876 196 EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248 (261)
Q Consensus 196 ~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~ 248 (261)
+.|..|...|..|.+..+. ..+.+.|-+|+|..|+..++
T Consensus 381 ~~~enAe~hf~~a~k~t~~--------------~dl~a~~nlnlAi~YL~~~~ 419 (629)
T KOG2300|consen 381 NCYENAEFHFIEATKLTES--------------IDLQAFCNLNLAISYLRIGD 419 (629)
T ss_pred chHHHHHHHHHHHHHhhhH--------------HHHHHHHHHhHHHHHHHhcc
Confidence 4445555555555554322 45678899999999999775
No 280
>PRK10941 hypothetical protein; Provisional
Probab=25.58 E-value=92 Score=26.97 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=28.1
Q ss_pred HHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 229 LAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 229 ~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
+.+...++.|+-.+|++.++|..|+..++..|
T Consensus 177 ~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll 208 (269)
T PRK10941 177 IEVIRKLLDTLKAALMEEKQMELALRASEALL 208 (269)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 45667789999999999999999999998775
No 281
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=25.53 E-value=1.6e+02 Score=22.60 Aligned_cols=24 Identities=4% Similarity=0.040 Sum_probs=19.9
Q ss_pred hhHHHHHHhhcCCCCcEEEEEEeC
Q 024876 108 EMTGLAIGVSSMKAGEHALLHVGW 131 (261)
Q Consensus 108 ~i~gle~~l~~Mk~Ge~~~~~i~~ 131 (261)
+...+-.||.+.++|+.+.+..|.
T Consensus 91 i~SPlG~ALlG~~~Gd~v~v~~p~ 114 (137)
T PRK05753 91 VLAPVGAALLGLSVGQSIDWPLPG 114 (137)
T ss_pred ccCHHHHHHcCCCCCCEEEEECCC
Confidence 456788999999999999987543
No 282
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=24.81 E-value=75 Score=27.73 Aligned_cols=52 Identities=21% Similarity=0.148 Sum_probs=34.5
Q ss_pred chhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHH
Q 024876 186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIG 254 (261)
Q Consensus 186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~ 254 (261)
.-.+.-+...|+|.+|......|+..-.. ...++.|++.|...+|+..++..
T Consensus 205 ng~A~~~l~~~~~~eAe~~L~~al~~~~~-----------------~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 205 NGLAVCHLQLGHYEEAEELLEEALEKDPN-----------------DPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHCCC-CC-----------------HHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhccC-----------------CHHHHHHHHHHHHHhCCChhHHH
Confidence 34566677889999998888887642111 12478899999999998844443
No 283
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=24.30 E-value=2.2e+02 Score=27.26 Aligned_cols=53 Identities=15% Similarity=-0.003 Sum_probs=36.8
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876 190 NALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (261)
Q Consensus 190 n~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a 259 (261)
..+-..|+|..|+....+||..-.. .+-+|.-.|.++-+.|++.+|....+.|
T Consensus 202 qhyd~~g~~~~Al~~Id~aI~htPt-----------------~~ely~~KarilKh~G~~~~Aa~~~~~A 254 (517)
T PF12569_consen 202 QHYDYLGDYEKALEYIDKAIEHTPT-----------------LVELYMTKARILKHAGDLKEAAEAMDEA 254 (517)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCC-----------------cHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344678888888888888875322 2357777777778888888777766655
No 284
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=24.16 E-value=1.4e+02 Score=26.95 Aligned_cols=74 Identities=16% Similarity=0.132 Sum_probs=45.2
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHHhhcccccc-------ccchhHHH---------HHHHhhhhhhhHHHHHHHHhhCHHH
Q 024876 188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMF-------QLFGKYRD---------MALAVKNPCHLNMAACLLKLKRYEE 251 (261)
Q Consensus 188 ~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~-------~~~~~~~~---------~~~~l~~~~~~N~A~c~lKl~~~~~ 251 (261)
.|.-+++-|-+.+|.+.++.+|.-..-...+ ...+.... ......++.++-+|..|-.++++++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~ 308 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQED 308 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHH
Confidence 4566666677777777776666544221000 00000000 1123346788899999999999999
Q ss_pred HHHHHHhhcC
Q 024876 252 AIGQCSLVSK 261 (261)
Q Consensus 252 ai~~c~~aL~ 261 (261)
|+.....||+
T Consensus 309 a~~lYk~vlk 318 (478)
T KOG1129|consen 309 ALQLYKLVLK 318 (478)
T ss_pred HHHHHHHHHh
Confidence 9999988874
No 285
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=24.02 E-value=1.3e+02 Score=27.21 Aligned_cols=63 Identities=14% Similarity=0.087 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHhhcccccccc------chhHHHHHHHhhhhh--hhHHHHHHHHhhCHHHHHHHHHh
Q 024876 196 EKLEEAMQQYEMAIAYMGDDFMFQL------FGKYRDMALAVKNPC--HLNMAACLLKLKRYEEAIGQCSL 258 (261)
Q Consensus 196 ~~~~~A~~~Y~kal~~l~~~~~~~~------~~~~~~~~~~l~~~~--~~N~A~c~lKl~~~~~ai~~c~~ 258 (261)
--..+|.+.+++|++..+....... ...+-...+...+.. .-.+|+|.-|+|+..+|++-.+.
T Consensus 230 ~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RD 300 (556)
T KOG3807|consen 230 TTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRD 300 (556)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3455788888888887654322100 011222334444444 45689999999999999986543
No 286
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=23.96 E-value=69 Score=30.40 Aligned_cols=73 Identities=10% Similarity=-0.108 Sum_probs=0.0
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHhhccccccc-cchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ-LFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~-~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a 259 (261)
+.|--+|+-+.|.-++..|.+|++-+......+ .......-...-...+++|....|+..|+...|.....++
T Consensus 288 NlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 288 NLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred CcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
No 287
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=23.72 E-value=1.9e+02 Score=25.54 Aligned_cols=68 Identities=10% Similarity=-0.024 Sum_probs=49.2
Q ss_pred hhhhhHHHHHHHHHHHHHhhccccccc-cchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 193 FKEEKLEEAMQQYEMAIAYMGDDFMFQ-LFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 193 fk~~~~~~A~~~Y~kal~~l~~~~~~~-~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
|..-.|......|.+||+.+....... ........+....+.++++++.-....|-.+.|+......|
T Consensus 113 ~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~l 181 (321)
T PF08424_consen 113 FASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALL 181 (321)
T ss_pred hccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHH
Confidence 445578889999999998886432111 11233456677888899999999999999999988766554
No 288
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=23.58 E-value=2.6e+02 Score=24.10 Aligned_cols=49 Identities=16% Similarity=0.168 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876 195 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260 (261)
Q Consensus 195 ~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL 260 (261)
.++...|.+.|+++++.+..+ ..+.+.....++++++.+.|......++
T Consensus 49 ~~d~~~A~~Ife~glk~f~~~-----------------~~~~~~Y~~~l~~~~d~~~aR~lfer~i 97 (280)
T PF05843_consen 49 NKDPKRARKIFERGLKKFPSD-----------------PDFWLEYLDFLIKLNDINNARALFERAI 97 (280)
T ss_dssp CS-HHHHHHHHHHHHHHHTT------------------HHHHHHHHHHHHHTT-HHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHCCCC-----------------HHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 677777999999999887542 1223333345566666666665555543
No 289
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=23.55 E-value=84 Score=16.23 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHhhc
Q 024876 196 EKLEEAMQQYEMAIAYMG 213 (261)
Q Consensus 196 ~~~~~A~~~Y~kal~~l~ 213 (261)
|++..|...|.+++..+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~ 18 (33)
T smart00386 1 GDIERARKIYERALEKFP 18 (33)
T ss_pred CcHHHHHHHHHHHHHHCC
Confidence 467788999999998764
No 290
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=23.34 E-value=1.6e+02 Score=26.08 Aligned_cols=56 Identities=14% Similarity=0.165 Sum_probs=0.0
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHH
Q 024876 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEE 251 (261)
Q Consensus 187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ 251 (261)
+.+|...+.++|..|+..|.+.+.--..- .+......-...+|+...|...|+|..
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~---------dek~~nEqE~tvlel~~lyv~~g~~~~ 63 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSK---------DEKTLNEQEATVLELFKLYVSKGDYCS 63 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCCh---------hhhhhhHHHHHHHHHHHHHHhcCCcch
No 291
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.99 E-value=2.1e+02 Score=24.59 Aligned_cols=33 Identities=12% Similarity=0.090 Sum_probs=16.3
Q ss_pred hhhhcccchhhHHhhh-hhhHHHHHHHHHHHHHh
Q 024876 179 IGAADRRKMDGNALFK-EEKLEEAMQQYEMAIAY 211 (261)
Q Consensus 179 ~~~a~~~K~~Gn~~fk-~~~~~~A~~~Y~kal~~ 211 (261)
++.+..+-.++-..|| +++|..|-..|.+|..+
T Consensus 30 ~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~ 63 (288)
T KOG1586|consen 30 YEEAAELYERAANMYKLAKNWSAAGDAFLKAADL 63 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444444444433343 55566666666555544
No 292
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=22.83 E-value=2.7e+02 Score=20.80 Aligned_cols=25 Identities=36% Similarity=0.385 Sum_probs=14.1
Q ss_pred chhhHHhhhhhhHHHHHHHHHHHHH
Q 024876 186 KMDGNALFKEEKLEEAMQQYEMAIA 210 (261)
Q Consensus 186 K~~Gn~~fk~~~~~~A~~~Y~kal~ 210 (261)
...+..+...+++..+...+..++.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (291)
T COG0457 63 LLLALALLKLGRLEEALELLEKALE 87 (291)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 3344445556666666666666654
No 293
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.60 E-value=1.7e+02 Score=25.77 Aligned_cols=54 Identities=22% Similarity=0.292 Sum_probs=42.4
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHH
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ 255 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~ 255 (261)
.-..+..+...+++..|...+..++...... ..+.+-+|-|++..|+.+.|..-
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~-----------------~~~~~~la~~~l~~g~~e~A~~i 190 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPEN-----------------SEAKLLLAECLLAAGDVEAAQAI 190 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCccc-----------------chHHHHHHHHHHHcCChHHHHHH
Confidence 4456788899999999999999999875432 24566689999999999776543
No 294
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=22.37 E-value=3e+02 Score=23.66 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=34.7
Q ss_pred CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccc-----h----hHHHHHHhhcCCCCcEE
Q 024876 66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKK-----E----MTGLAIGVSSMKAGEHA 125 (261)
Q Consensus 66 ~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~-----~----i~gle~~l~~Mk~Ge~~ 125 (261)
..++||.|.|.+.... +|-.-|+ .++|.+|.... + -.+|..++..+++|-+.
T Consensus 86 vlk~GDiv~IDvg~~~--dG~~~Ds------a~T~~vg~~~~~~~~~L~~~t~eal~~~I~~vkpG~~l 146 (255)
T COG0024 86 VLKEGDIVKIDVGAHI--DGYIGDT------AITFVVGEVSDEDAKRLLEATKEALYAGIEAVKPGARL 146 (255)
T ss_pred ccCCCCEEEEEEEEEE--CCeeeeE------EEEEECCCCChHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 5778999999888765 3544444 47888884201 2 25677778888888654
No 295
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=22.30 E-value=1.8e+02 Score=22.89 Aligned_cols=23 Identities=9% Similarity=0.092 Sum_probs=19.7
Q ss_pred hHHHHHHhhcCCCCcEEEEEEeC
Q 024876 109 MTGLAIGVSSMKAGEHALLHVGW 131 (261)
Q Consensus 109 i~gle~~l~~Mk~Ge~~~~~i~~ 131 (261)
...|-.+|.+-++|+.+.+.+|.
T Consensus 122 ~SPlG~ALlGk~vGd~v~v~~p~ 144 (157)
T PRK01885 122 DSPMARALLKKEVGDEVTVNTPA 144 (157)
T ss_pred cCHHHHHHhCCCCCCEEEEEcCC
Confidence 45788999999999999988765
No 296
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=22.24 E-value=91 Score=25.15 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=25.6
Q ss_pred hhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 232 KNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 232 ~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
++..+.|+..-|.+.++|.-|+-.|..||+
T Consensus 139 rl~tL~nlv~q~~~q~r~evav~~~KqalE 168 (181)
T PF09311_consen 139 RLRTLHNLVIQYESQGRYEVAVPLCKQALE 168 (181)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 456788999999999999999999999874
No 297
>PF08437 Glyco_transf_8C: Glycosyl transferase family 8 C-terminal; InterPro: IPR013645 This domain is found at the C terminus of bacterial glucosyltransferase and galactosyltransferase proteins. ; GO: 0008918 lipopolysaccharide 3-alpha-galactosyltransferase activity, 0009103 lipopolysaccharide biosynthetic process
Probab=21.69 E-value=69 Score=20.61 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=23.2
Q ss_pred hhhcccchhhHHhhhhhhHHHHHHHHHH
Q 024876 180 GAADRRKMDGNALFKEEKLEEAMQQYEM 207 (261)
Q Consensus 180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~k 207 (261)
....++|..+..+|++|+|-.++..|-+
T Consensus 25 ~~~~e~r~~~Kh~~~q~ky~~~i~~~i~ 52 (57)
T PF08437_consen 25 KNSKELRYKAKHLFKQGKYISGIKWYIK 52 (57)
T ss_pred CChHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 4556788899999999999999887754
No 298
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=21.30 E-value=82 Score=23.32 Aligned_cols=14 Identities=7% Similarity=0.157 Sum_probs=10.1
Q ss_pred cceeEeCCcEEEEE
Q 024876 45 SEVEVLHEKVTKQI 58 (261)
Q Consensus 45 ~~~~~~~~gi~k~v 58 (261)
..|.+|++|++|+|
T Consensus 111 ~GV~~t~SGLqY~V 124 (124)
T PF01346_consen 111 EGVKTTESGLQYKV 124 (124)
T ss_dssp TTEEE-TTS-EEEE
T ss_pred CCCEECCCCCeeeC
Confidence 46789999999987
No 299
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.30 E-value=2.8e+02 Score=25.26 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=51.8
Q ss_pred cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc---ccc-------c-hhHHHHHHHhhh------hh--h--hHHHH
Q 024876 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM---FQL-------F-GKYRDMALAVKN------PC--H--LNMAA 241 (261)
Q Consensus 183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~---~~~-------~-~~~~~~~~~l~~------~~--~--~N~A~ 241 (261)
+++....-.+|.+|++..|...+.+.|+-...+.. +.. . ..-+..++.+.- .| | -=+|-
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF 183 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence 56677778889999999999999998876543210 000 0 001112222221 12 2 34789
Q ss_pred HHHHhhCHHHHHHHHHhhcC
Q 024876 242 CLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 242 c~lKl~~~~~ai~~c~~aL~ 261 (261)
|.+.+|-|++|...++++|+
T Consensus 184 gL~E~g~y~dAEk~A~ralq 203 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQ 203 (491)
T ss_pred hHHHhccchhHHHHHHhhcc
Confidence 99999999999999999874
No 300
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=21.18 E-value=2e+02 Score=25.30 Aligned_cols=68 Identities=15% Similarity=0.199 Sum_probs=44.5
Q ss_pred chhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHH
Q 024876 186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC 256 (261)
Q Consensus 186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c 256 (261)
-+.+..++=..+|..|+...++++..+......+ +......+++..+..==-.|...|++|.+++.-.
T Consensus 39 e~Aad~LvV~rdF~aal~tCerglqsL~~~a~~e---e~~~~~~evK~sLcvvGIQALAEmnrWreVLsWv 106 (309)
T PF07163_consen 39 EEAADLLVVHRDFQAALETCERGLQSLASDADAE---EPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWV 106 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc---ccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHH
Confidence 3345566889999999999999999985432111 1112233455554444456778899999987643
No 301
>PF02071 NSF: Aromatic-di-Alanine (AdAR) repeat ; InterPro: IPR000744 Regulated exocytosis of neurotransmitters and hormones, as well as intracellular traffic, requires fusion of two lipid bilayers. SNARE proteins are thought to form a protein bridge, the SNARE complex, between an incoming vesicle and the acceptor compartment. SNARE proteins contribute to the specificity of membrane fusion, implying that the mechanisms by which SNAREs are targeted to subcellular compartments are important for specific docking and fusion of vesicles. This mechanism involves a family of conserved proteins, members of which appear to function at all sites of constitutive and regulated secretion in eukaryotes []. Among them are 2 types of cytosolic protein, NSF (N-ethyl-maleimide-sensitive protein) and the SNAPs (alpha-, beta- and gamma-soluble NSF attachment proteins). The yeast vesicular fusion protein, sec17, a cytoplasmic peripheral membrane protein involved in vesicular transport between the endoplasmic reticulum and the golgi apparatus, shows a high degree of sequence similarity to the alpha-SNAP family. SNAP-25 and its non-neuronal homologue Syndet/SNAP-23 are synthesized as soluble proteins in the cytosol. Both SNAP-25 and Syndet/SNAP-23 are palmitoylated at cysteine residues clustered in a loop between two N- and C-terminal coils and palmitoylation is essential for membrane binding and plasma membrane targeting. The C-terminal and the N-terminal helices of SNAP-25, are each targeted to the plasma membrane by two distinct cysteine-rich domains and appear to regulate the availability of SNAP to form complexes with SNARE [].; GO: 0006886 intracellular protein transport
Probab=20.80 E-value=55 Score=14.12 Aligned_cols=8 Identities=38% Similarity=0.551 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 024876 202 MQQYEMAI 209 (261)
Q Consensus 202 ~~~Y~kal 209 (261)
+..|++|-
T Consensus 2 ~~~y~~Aa 9 (12)
T PF02071_consen 2 IKCYEKAA 9 (12)
T ss_pred cHHHHHHH
Confidence 34444443
No 302
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=20.65 E-value=1.6e+02 Score=23.07 Aligned_cols=41 Identities=12% Similarity=0.117 Sum_probs=34.7
Q ss_pred chhhHhhhhcccchhhHHhhhhh-hHHHHHHHHHHHHHhhcc
Q 024876 174 TVEERIGAADRRKMDGNALFKEE-KLEEAMQQYEMAIAYMGD 214 (261)
Q Consensus 174 ~~ee~~~~a~~~K~~Gn~~fk~~-~~~~A~~~Y~kal~~l~~ 214 (261)
+.+++-.....--..|-.++..| ++.+|+.++-+||..+..
T Consensus 82 d~~e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~q 123 (148)
T TIGR00985 82 DPSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQ 123 (148)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCC
Confidence 45667777777888999999999 999999999999988754
No 303
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=20.54 E-value=2.6e+02 Score=28.93 Aligned_cols=77 Identities=16% Similarity=0.003 Sum_probs=49.3
Q ss_pred cchhhHHhhhhhhHHHHHHHHHHHHHhhccc------------------cccccchh---HHHHHHHhhhh-----hhhH
Q 024876 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDD------------------FMFQLFGK---YRDMALAVKNP-----CHLN 238 (261)
Q Consensus 185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~------------------~~~~~~~~---~~~~~~~l~~~-----~~~N 238 (261)
.-.-...+...+.|.+|+..|+|...-+.-. ...+.... -..++..+.-. =|+-
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLG 557 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHh
Confidence 3444567788999999999999887655211 00011011 11223333322 2788
Q ss_pred HHHHHHHhhCHHHHHHHHHhhcC
Q 024876 239 MAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 239 ~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
-|++|..+++|.+=++...-||+
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~ 580 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALK 580 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999999999988777763
No 304
>PLN03218 maturation of RBCL 1; Provisional
Probab=20.53 E-value=2.1e+02 Score=29.98 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHhhhhhhHHHHHHHHHHHHHh-hccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876 190 NALFKEEKLEEAMQQYEMAIAY-MGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261 (261)
Q Consensus 190 n~~fk~~~~~~A~~~Y~kal~~-l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~ 261 (261)
+.+.+.|++..|.+.|.+.... +..+ ...|+.+..+|.+.|++++|+....+..+
T Consensus 692 ~ay~k~G~~eeA~~lf~eM~~~g~~Pd-----------------vvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 692 GACSNAKNWKKALELYEDIKSIKLRPT-----------------VSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCC-----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
No 305
>KOG4509 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.32 E-value=89 Score=25.36 Aligned_cols=36 Identities=25% Similarity=0.230 Sum_probs=27.2
Q ss_pred hhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhcc
Q 024876 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD 214 (261)
Q Consensus 179 ~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~ 214 (261)
+..|.-+-..+.+.=+.|+|.+|+-+|+.++.++..
T Consensus 12 ~~aAa~iL~~AVe~d~e~k~pqALl~YkeGIdLi~e 47 (247)
T KOG4509|consen 12 LKAAAPILCDAVEDDKEGKVPQALLCYKEGIDLIAE 47 (247)
T ss_pred hhhhhhHHHHHhcccccccccHHHHHHhhhHHHHHH
Confidence 444444555566667899999999999999998753
No 306
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=20.23 E-value=2.5e+02 Score=23.69 Aligned_cols=50 Identities=16% Similarity=0.117 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876 199 EEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (261)
Q Consensus 199 ~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a 259 (261)
...+....+|+..+... ....+...+...+|.-|+++|+|..|+.....+
T Consensus 155 ~~iI~lL~~A~~~f~~~-----------~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKY-----------GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHHHHHHHHHh-----------ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 35566677777665432 113445567778999999999999999877665
No 307
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.20 E-value=1.7e+02 Score=27.90 Aligned_cols=84 Identities=11% Similarity=0.078 Sum_probs=47.5
Q ss_pred CCchhhHhhhhcc-cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHH---HHHhhhhhhhHHHHHHHHhh
Q 024876 172 DMTVEERIGAADR-RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDM---ALAVKNPCHLNMAACLLKLK 247 (261)
Q Consensus 172 ~l~~ee~~~~a~~-~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~---~~~l~~~~~~N~A~c~lKl~ 247 (261)
.+..+..+..+.. .+.+||-. .+++| .++++-+||..+...........+.++. ++...-..|. ..+|..+.-
T Consensus 90 ~~e~era~Aeam~~~~Qe~n~e-~rkrf-hll~rLrkA~~~A~eL~~~~q~~e~~Da~tkLEA~Ayaa~m-~G~lnfE~r 166 (593)
T KOG2460|consen 90 LAEAERAYAEAMQLAKQEGNTE-SRKRF-HLLNRLRKAVKHADELVNLTQNEERFDARTKLEAQAYAAYM-EGMLNFERR 166 (593)
T ss_pred hhhHHHHHHHHHHHHHHhcCcc-hHHHH-HHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHH-HhhhhhhHH
Confidence 4456777777777 88889887 66665 6778888887665432211111122222 2222222233 456666666
Q ss_pred CHHHHHHHHHh
Q 024876 248 RYEEAIGQCSL 258 (261)
Q Consensus 248 ~~~~ai~~c~~ 258 (261)
+|+.|....+.
T Consensus 167 ~Wk~a~ea~~~ 177 (593)
T KOG2460|consen 167 KWKDAAEAFNN 177 (593)
T ss_pred hHHhHHHHHHH
Confidence 77776665443
No 308
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=20.02 E-value=1.9e+02 Score=22.63 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=19.2
Q ss_pred hhHHHHHHhhcCCCCcEEEEEEe
Q 024876 108 EMTGLAIGVSSMKAGEHALLHVG 130 (261)
Q Consensus 108 ~i~gle~~l~~Mk~Ge~~~~~i~ 130 (261)
+...+-.+|.+-++|+.+.+..|
T Consensus 115 ~~SPig~aLlGk~vGd~v~v~~p 137 (151)
T COG0782 115 VDSPLGRALLGKKVGDTVEVNTP 137 (151)
T ss_pred ccCHHHHHHhCCCCCCEEEEecC
Confidence 34567899999999999998866
Done!