BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024877
(261 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54YW1|ELMOA_DICDI ELMO domain-containing protein A OS=Dictyostelium discoideum
GN=elmoA PE=1 SV=1
Length = 977
Score = 116 bits (290), Expect = 2e-25, Method: Composition-based stats.
Identities = 67/214 (31%), Positives = 102/214 (47%), Gaps = 27/214 (12%)
Query: 60 QEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPST 119
Q Q + R +V ++ EH L LW+ +P +L +SEQWK+MG+QG DP T
Sbjct: 362 QRHRFQVITNRKNVTFNKESSEHDALLMKLWSLTYPGVKLESRVSEQWKQMGFQGTDPCT 421
Query: 120 DFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFML---IQML 176
DFR G L+NL+Y A+N+ + F+ ++ Q DR EYP A AG+ +TF L I +
Sbjct: 422 DFRAMGIWGLDNLIYFAQNYNEKFRKIVNSQI-DRKEREYPTATAGIVLTFELYNSIFKM 480
Query: 177 DLEAVKPRTMVGAT---------------FLKFLSENESAFDLLYCITFKLMDHQWLAMR 221
+ P + F + AF+ +YC TF+++D W M
Sbjct: 481 GTPNLNPYNSTTSNTTSNTTSTTNIDDLPFFPLFFSHPHAFEEVYCTTFQILDSTWDDMN 540
Query: 222 ASYMDFNTVMKSTRRQLERELLLEDVTRLEDLPS 255
+YM F +M S + + +T LE P+
Sbjct: 541 GTYMHFQKIMSSVKNLI--------ITALESKPT 566
>sp|Q54RS7|ELMOC_DICDI ELMO domain-containing protein C OS=Dictyostelium discoideum
GN=elmoC PE=4 SV=1
Length = 618
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 105/192 (54%), Gaps = 16/192 (8%)
Query: 56 LTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGK 115
+T Q + ++ L + Y+S+ P+H E L+ LW+ +P++E + S WK+ G+Q
Sbjct: 357 VTAKQSQTIKILFQKKSTIYESTNPDHEEYLKHLWSLLYPEQEFQKK-SPLWKKFGFQSD 415
Query: 116 DPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNIT---FML 172
DP+ DFRG G + L NL++L ++ Q++L + DR +YPFAVAG+NI+ F +
Sbjct: 416 DPTRDFRGMGIMGLLNLIHLVQHHNDWVQEILAQ---DR---DYPFAVAGINISNLIFEV 469
Query: 173 IQMLDLEAVKPRTMVG------ATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMD 226
Q+ + +P A N+ AF+ LY + F L+DH W+ M A+YM
Sbjct: 470 FQISEDSLQQPWYSSFWSSSYMAMLCSMSRHNDHAFEELYFLIFNLLDHLWIQMNATYMM 529
Query: 227 FNTVMKSTRRQL 238
F V+K + QL
Sbjct: 530 FPLVIKKLKSQL 541
>sp|Q54UP9|ELMOD_DICDI Ankyrin repeat and ELMO domain-containing protein D
OS=Dictyostelium discoideum GN=elmoD PE=4 SV=1
Length = 1267
Score = 94.7 bits (234), Expect = 5e-19, Method: Composition-based stats.
Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 16/176 (9%)
Query: 64 LQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRG 123
+Q L + Y+ P H+ L LW+ FP++ + E W+ +G+Q KDPS+DFRG
Sbjct: 290 IQGLIMDSKTPYNKDEPSHQRLLETLWSTLFPNQVFQR-SHENWQIIGFQNKDPSSDFRG 348
Query: 124 GGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKP 183
G L++L+YLA+N F + L ++ + + YP+A +G+ +T L+ E VKP
Sbjct: 349 MGLAGLKHLIYLAQNHKDMFMNPLINRQPEANY--YPYATSGIQVTSFLV-----ECVKP 401
Query: 184 -------RTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMK 232
++G + L E+E+A + +YC+ ++ W A+YM F V +
Sbjct: 402 INISANHSDVIGQIY-PILFESENALNEIYCVLMEIFGIVWKDWNATYMIFQKVFQ 456
>sp|Q54VR8|ELMOB_DICDI ELMO domain-containing protein B OS=Dictyostelium discoideum
GN=elmoB PE=4 SV=1
Length = 284
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 11/161 (6%)
Query: 73 VAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENL 132
+ YD++ EH +L LW A PD +S++W +G+QG DP+TDFRG G + L+NL
Sbjct: 116 IPYDNNNLEHEASLERLWEALLPDVRRSARLSKEWGTLGFQGMDPATDFRGMGILGLDNL 175
Query: 133 LYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFL 192
+Y + + +++L+ S YPFA+ G+NIT +++ ++D K + L
Sbjct: 176 IYFSTQHSEDAREILK---NSNSKCCYPFAITGINITALVLNLIDKPHFKIYFFKNGSTL 232
Query: 193 KFLSENESAFDLLYCITFKLMDHQWLAMR-ASYMDFNTVMK 232
+ F+ LY + F D + + + S M+FNT+ K
Sbjct: 233 -------TQFNELYSLVFISFDRFYQSKKPKSIMEFNTIKK 266
>sp|Q08DZ3|ELMD2_BOVIN ELMO domain-containing protein 2 OS=Bos taurus GN=ELMOD2 PE=1 SV=1
Length = 293
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 100/217 (46%), Gaps = 19/217 (8%)
Query: 40 CVCAQRRESDPRPSFD--LTPAQEECLQRL----QLRIDV------AYDSSIPEHREALR 87
CV +E + P D + CL ++ QL +DV YDS +H + L
Sbjct: 73 CVEDIMKEKNINPEKDASFKICMKACLLQISGYKQLYLDVESVRKKPYDSDNLQHEKLLI 132
Query: 88 ALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLL 147
LWN P ++L+ IS+QW ++G+QG DP TDFRG G + L NL+Y + N+ +L
Sbjct: 133 KLWNLLMPTKKLKARISKQWADIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQIL 192
Query: 148 RKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYC 207
+ + Y +A+ G+N+T M +L EA+K F+ + E F YC
Sbjct: 193 SRSNHPKL--GYSYAIVGINLTEMAYSLLKSEALKFHLY---NFVPGIPTMEH-FHQFYC 246
Query: 208 ITFKLMDHQWLAMRA-SYMDFNTVMKSTRRQLERELL 243
D W + S M FN + +++ LL
Sbjct: 247 YLVYEFDKFWFEEKPESIMYFNVYREKFHEKIKGLLL 283
>sp|Q8IZ81|ELMD2_HUMAN ELMO domain-containing protein 2 OS=Homo sapiens GN=ELMOD2 PE=1
SV=1
Length = 293
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 76/149 (51%), Gaps = 12/149 (8%)
Query: 44 QRRESDPRPSFDLTPAQEECLQRL----QLRIDV------AYDSSIPEHREALRALWNAA 93
+ + +P + CL ++ QL +DV YDS +H E L LWN
Sbjct: 79 KEKNINPEKDASFKICMKMCLLQITGYKQLYLDVESVRKRPYDSDNLQHEELLMKLWNLL 138
Query: 94 FPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRKQEGD 153
P ++L IS+QW E+G+QG DP TDFRG G + L NL+Y + N+ +L +
Sbjct: 139 MPTKKLNARISKQWAEIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSNHP 198
Query: 154 RSVWEYPFAVAGVNITFMLIQMLDLEAVK 182
+ Y +A+ G+N+T M +L EA+K
Sbjct: 199 KL--GYSYAIVGINLTEMAYSLLKSEALK 225
>sp|Q499U2|ELMO3_RAT Engulfment and cell motility protein 3 OS=Rattus norvegicus
GN=Elmo3 PE=2 SV=1
Length = 720
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 95/195 (48%), Gaps = 15/195 (7%)
Query: 67 LQLRIDVAYDSSIPEHREALRALWNAAF-PDEEL----------RDLISEQWKEMGWQGK 115
L+ R+ D E RE L+AL AAF PD E R L +++++G+
Sbjct: 293 LEPRMRTPLDPYSQEQREQLQALRQAAFEPDGESLGTGLSADRRRSLCVREFRKLGFSNS 352
Query: 116 DPSTDFR--GGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLI 173
P+ D G ++L+N+LY +R+ P ++ + + E PFA + + +T +L
Sbjct: 353 SPAQDLERVPPGLLALDNMLYFSRHAPSAYSRFVLENSSREDKHECPFARSSIQLTVLLC 412
Query: 174 QMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKS 233
++L + +P + F + +F L+C+ +L++ W MRA+ DF+ VM+
Sbjct: 413 ELLHVG--EPCSETAQDFSPMFFSQDHSFHELFCVAIQLLNKTWKEMRATQEDFDKVMQV 470
Query: 234 TRRQLERELLLEDVT 248
R QL R L L+ +
Sbjct: 471 VREQLARTLALKPTS 485
>sp|A6QR40|ELMO3_BOVIN Engulfment and cell motility protein 3 OS=Bos taurus GN=ELMO3 PE=2
SV=1
Length = 652
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 93/192 (48%), Gaps = 15/192 (7%)
Query: 67 LQLRIDVAYDSSIPEHREALRALWNAAFPDE-----------ELRDLISEQWKEMGWQGK 115
L+ R+ D E RE L+AL AAF E R L + +++++G+
Sbjct: 293 LEPRMRTPLDPYSQEQREQLQALRQAAFEPEGESVGAGLSADRRRSLCAREFRKLGFSNS 352
Query: 116 DPSTDFR--GGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLI 173
+P+ D G ++L+N+LY +R P ++ + + E PFA + + +T +L
Sbjct: 353 NPAQDLERVPPGLLALDNMLYFSRQAPSAYSRFVLENSSREDKHECPFARSSIQLTVLLC 412
Query: 174 QMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKS 233
+L + +P + F + +F L+C++ +L++ W MRA+ DF+ VM+
Sbjct: 413 DLLHVG--EPCSETAQDFSPMFFGQDQSFHELFCVSIQLLNKTWKEMRATQEDFDKVMQV 470
Query: 234 TRRQLERELLLE 245
R QL R L L+
Sbjct: 471 VREQLARTLALK 482
>sp|Q8BGF6|ELMD2_MOUSE ELMO domain-containing protein 2 OS=Mus musculus GN=Elmod2 PE=2
SV=1
Length = 293
Score = 84.3 bits (207), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 7/155 (4%)
Query: 75 YDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLY 134
YDS+ +H + L LW+ P ++L IS+QW ++G+QG DP TDFRG G + L NL+Y
Sbjct: 120 YDSANAQHEKMLLKLWSLLMPTKKLTARISKQWADIGFQGDDPKTDFRGMGILGLINLVY 179
Query: 135 LARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKF 194
+ N+ +L + + Y +A+ G+N+T M +L EA+K F+
Sbjct: 180 FSENYTSEAHQILSRSNHPK--LGYSYAIVGINLTEMAYSLLKSEALKLHLY---NFVPG 234
Query: 195 LSENESAFDLLYCITFKLMDHQWLAMRA-SYMDFN 228
+ E F YC D WL S M FN
Sbjct: 235 VPTMEH-FHQFYCYLVYEFDKFWLEEEPESIMYFN 268
>sp|Q96BJ8|ELMO3_HUMAN Engulfment and cell motility protein 3 OS=Homo sapiens GN=ELMO3
PE=2 SV=3
Length = 720
Score = 84.3 bits (207), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 15/195 (7%)
Query: 67 LQLRIDVAYDSSIPEHREALRALWNAAFPDE-----------ELRDLISEQWKEMGWQGK 115
L+ R+ D E RE L+ L AAF E R L + +++++G+
Sbjct: 293 LEPRMRTPLDPYSQEQREQLQVLRQAAFEVEGESSGAGLSADRRRSLCAREFRKLGFSNS 352
Query: 116 DPSTDFR--GGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLI 173
+P+ D G ++L+N+LY +RN P ++ + + E PFA + +T +L
Sbjct: 353 NPAQDLERVPPGLLALDNMLYFSRNAPSAYSRFVLENSSREDKHECPFARGSIQLTVLLC 412
Query: 174 QMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKS 233
++L + +P + F + +F L+C+ +L++ W MRA+ DF+ VM+
Sbjct: 413 ELLRVG--EPCSETAQDFSPMFFGQDQSFHELFCVGIQLLNKTWKEMRATQEDFDKVMQV 470
Query: 234 TRRQLERELLLEDVT 248
R QL R L L+ +
Sbjct: 471 VREQLARTLALKPTS 485
>sp|Q0IIE6|ELMD1_BOVIN ELMO domain-containing protein 1 OS=Bos taurus GN=ELMOD1 PE=2 SV=1
Length = 326
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 85/185 (45%), Gaps = 20/185 (10%)
Query: 74 AYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLL 133
+YDS P+H E L LW P+ L IS+QW E+G+QG DP TDFRG G + L NL
Sbjct: 126 SYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQ 185
Query: 134 YLARNFPKSFQDLL------RKQEGDRSVWE---------YPFAVAGVNITFMLIQMLDL 178
Y A + Q +L + + ++ WE Y FA+ G+NIT + +L
Sbjct: 186 YFAERDAAAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVS 245
Query: 179 EAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRA-SYMDFNTVMKSTRRQ 237
A+K A LS + F C W+ M+FN V + R++
Sbjct: 246 GALKTHFYNIAPEAPTLSHFQQTF----CYLMHEFHKFWIEEDPMDIMEFNRVREKFRKR 301
Query: 238 LEREL 242
+ ++L
Sbjct: 302 IIKQL 306
>sp|Q8BYZ7|ELMO3_MOUSE Engulfment and cell motility protein 3 OS=Mus musculus GN=Elmo3
PE=1 SV=2
Length = 720
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 15/195 (7%)
Query: 67 LQLRIDVAYDSSIPEHREALRALWNAAFPDE-----------ELRDLISEQWKEMGWQGK 115
L+ R+ D E R+ L+AL AAF E R L +++++G+
Sbjct: 293 LEPRMRTPLDPYSQEQRDQLQALRQAAFEPEGESLGTGLSADRRRSLCVREFRKLGFSNS 352
Query: 116 DPSTDFR--GGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLI 173
+P+ D G ++L+N+LY +R+ P ++ + + E PFA + + +T +L
Sbjct: 353 NPAQDLERVPPGLLALDNMLYFSRHAPSAYSRFVLENSSREDKHECPFARSSIQLTALLC 412
Query: 174 QMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKS 233
++L + +P + F + +F L+C+ +L++ W MRA+ DF+ VM+
Sbjct: 413 ELLRVG--EPCSETAQDFSPMFFSQDHSFHELFCVAIQLLNKTWKEMRATQEDFDKVMQV 470
Query: 234 TRRQLERELLLEDVT 248
R QL R L L+ +
Sbjct: 471 VREQLARTLALKPTS 485
>sp|Q5NVD7|ELMD1_PONAB ELMO domain-containing protein 1 OS=Pongo abelii GN=ELMOD1 PE=2
SV=1
Length = 326
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 75 YDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLY 134
YDS P+H E L LW P+ L IS+QW E+G+QG DP TDFRG G + L NL Y
Sbjct: 127 YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQY 186
Query: 135 LARNFPKSFQDLL------RKQEGDRSVWE---------YPFAVAGVNITFMLIQMLDLE 179
A + Q +L + + ++ WE Y FA+ G+NIT + +L
Sbjct: 187 FAERDATAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVSG 246
Query: 180 AVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRA-SYMDFNTVMKSTRRQL 238
A+K A LS + F C W+ M+FN V + R+++
Sbjct: 247 ALKTHFYNIAPEAPTLSHFQQTF----CYLMHEFHKFWIEEDPMDIMEFNRVREKFRKRI 302
Query: 239 EREL 242
++L
Sbjct: 303 IKQL 306
>sp|Q8N336|ELMD1_HUMAN ELMO domain-containing protein 1 OS=Homo sapiens GN=ELMOD1 PE=2
SV=3
Length = 334
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 86/193 (44%), Gaps = 28/193 (14%)
Query: 74 AYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLL 133
AYDS P+H E L LW P+ L IS+QW E+G+QG DP TDFRG G + L NL
Sbjct: 126 AYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQ 185
Query: 134 YLARNFPKSFQDLLR-----------KQE---GDRSVWE---------YPFAVAGVNITF 170
Y A + Q +L K+E ++ WE Y FA+ G+NIT
Sbjct: 186 YFAERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVGINITD 245
Query: 171 MLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRA-SYMDFNT 229
+ +L A+K A LS F +C W+ M+FN
Sbjct: 246 LAYNLLVSGALKTHFYNIAPEAPTLSH----FQQTFCYLMHEFHKFWIEEDPMDIMEFNR 301
Query: 230 VMKSTRRQLEREL 242
V + R+++ ++L
Sbjct: 302 VREKFRKRIIKQL 314
>sp|Q3V1U8|ELMD1_MOUSE ELMO domain-containing protein 1 OS=Mus musculus GN=Elmod1 PE=2
SV=2
Length = 326
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 84/185 (45%), Gaps = 22/185 (11%)
Query: 75 YDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLY 134
YDS P+H E L LW P+ L +S+QW E+G+QG DP TDFRG G + L NL Y
Sbjct: 127 YDSDNPQHEEMLLKLWELLKPNTPLESRVSKQWCEIGFQGDDPKTDFRGMGLLGLYNLQY 186
Query: 135 LARNFPKSFQDLL----------------RKQEGDRSVWEYPFAVAGVNITFMLIQMLDL 178
A Q +L K++ D+++ Y FA+ G+NIT + +L
Sbjct: 187 FAERDATVAQQVLSDSVHPKCSKFSKIEWEKKKMDKAI-GYSFAIVGINITDLAYNLLVS 245
Query: 179 EAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRA-SYMDFNTVMKSTRRQ 237
A+K A LS + F C W+ M+FN V + R++
Sbjct: 246 GALKTHFYNIAPEAPTLSHFQQTF----CYLMHEFHKFWIEEDPMDIMEFNRVREKFRKR 301
Query: 238 LEREL 242
+ ++L
Sbjct: 302 IIKQL 306
>sp|Q8BPU7|ELMO1_MOUSE Engulfment and cell motility protein 1 OS=Mus musculus GN=Elmo1
PE=1 SV=2
Length = 727
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 80/155 (51%), Gaps = 5/155 (3%)
Query: 91 NAAFPDEELRDLISEQWKEMGWQGK-DPSTDFRGG--GFISLENLLYLARNFPKSFQDLL 147
N++ E+ + + + +K++G+ +P+ DF G ++L+N+LY A++ ++ ++
Sbjct: 340 NSSGSMEKRKSMYTRDYKKLGFINHVNPAMDFTQTPPGMLALDNMLYFAKHHQDAYIRIV 399
Query: 148 RKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYC 207
+ E PF + + +T ML ++L + + T F ++ +F+ +C
Sbjct: 400 LENSSREDKHECPFGRSSIELTKMLCEILKVGELPSET--CNDFHPMFFTHDRSFEEFFC 457
Query: 208 ITFKLMDHQWLAMRASYMDFNTVMKSTRRQLEREL 242
I +L++ W MRA+ DFN VM+ + Q+ R L
Sbjct: 458 ICIQLLNKTWKEMRATSEDFNKVMQVVKEQVMRAL 492
>sp|Q92556|ELMO1_HUMAN Engulfment and cell motility protein 1 OS=Homo sapiens GN=ELMO1
PE=1 SV=2
Length = 727
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 80/155 (51%), Gaps = 5/155 (3%)
Query: 91 NAAFPDEELRDLISEQWKEMGWQGK-DPSTDFRGG--GFISLENLLYLARNFPKSFQDLL 147
N++ E+ + + + +K++G+ +P+ DF G ++L+N+LY A++ ++ ++
Sbjct: 340 NSSGSMEKRKSMYTRDYKKLGFINHVNPAMDFTQTPPGMLALDNMLYFAKHHQDAYIRIV 399
Query: 148 RKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYC 207
+ E PF + + +T ML ++L + + T F ++ +F+ +C
Sbjct: 400 LENSSREDKHECPFGRSSIELTKMLCEILKVGELPSET--CNDFHPMFFTHDRSFEEFFC 457
Query: 208 ITFKLMDHQWLAMRASYMDFNTVMKSTRRQLEREL 242
I +L++ W MRA+ DFN VM+ + Q+ R L
Sbjct: 458 ICIQLLNKTWKEMRATSEDFNKVMQVVKEQVMRAL 492
>sp|A4FUD6|ELMO2_BOVIN Engulfment and cell motility protein 2 OS=Bos taurus GN=ELMO2 PE=2
SV=1
Length = 720
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 78/149 (52%), Gaps = 5/149 (3%)
Query: 97 EELRDLISEQWKEMGWQGK-DPSTDFRGG--GFISLENLLYLARNFPKSFQDLLRKQEGD 153
E+ + + ++ +K +G+ +P+ DF G ++L+N+LYLA+ ++ ++ +
Sbjct: 339 EKRKAMYTKDYKMLGFTNHINPAMDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSR 398
Query: 154 RSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLM 213
E PF + + +T ML ++L + + P F + ++ AF+ L+ I +L+
Sbjct: 399 EDKHECPFGRSAIELTKMLCEILQVGEL-PNEGRNDYHPMFFT-HDRAFEELFGICIQLL 456
Query: 214 DHQWLAMRASYMDFNTVMKSTRRQLEREL 242
+ W MRA+ DFN VM+ R Q+ R L
Sbjct: 457 NKTWKEMRATAEDFNKVMQVVREQITRAL 485
>sp|Q8BHL5|ELMO2_MOUSE Engulfment and cell motility protein 2 OS=Mus musculus GN=Elmo2
PE=1 SV=1
Length = 732
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 78/149 (52%), Gaps = 5/149 (3%)
Query: 97 EELRDLISEQWKEMGWQGK-DPSTDFRGG--GFISLENLLYLARNFPKSFQDLLRKQEGD 153
E+ + + ++ +K +G+ +P+ DF G ++L+N+LYLA+ ++ ++ +
Sbjct: 351 EKRKAMYTKDYKMLGFTNHINPALDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSR 410
Query: 154 RSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLM 213
E PF + + +T ML ++L + + P F + ++ AF+ L+ I +L+
Sbjct: 411 EDKHECPFGRSAIELTKMLCEILQVGEL-PNEGRNDYHPMFFT-HDRAFEELFGICIQLL 468
Query: 214 DHQWLAMRASYMDFNTVMKSTRRQLEREL 242
+ W MRA+ DFN VM+ R Q+ R L
Sbjct: 469 NKTWKEMRATAEDFNKVMQVVREQITRAL 497
>sp|Q5RCC1|ELMO2_PONAB Engulfment and cell motility protein 2 OS=Pongo abelii GN=ELMO2
PE=2 SV=1
Length = 720
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 78/149 (52%), Gaps = 5/149 (3%)
Query: 97 EELRDLISEQWKEMGWQGK-DPSTDFRGG--GFISLENLLYLARNFPKSFQDLLRKQEGD 153
E+ + + ++ +K +G+ +P+ DF G ++L+N+LYLA+ ++ ++ +
Sbjct: 339 EKRKAMYTKDYKMLGFTNHINPAMDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSR 398
Query: 154 RSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLM 213
E PF + + +T ML ++L + + P F + ++ AF+ L+ I +L+
Sbjct: 399 EDKHECPFGRSAIELTKMLCEILQVGEL-PNEGRNDYHPMFFT-HDRAFEELFGICIQLL 456
Query: 214 DHQWLAMRASYMDFNTVMKSTRRQLEREL 242
+ W MRA+ DFN VM+ R Q+ R L
Sbjct: 457 NKTWKEMRATAEDFNKVMQVVREQITRAL 485
>sp|Q96JJ3|ELMO2_HUMAN Engulfment and cell motility protein 2 OS=Homo sapiens GN=ELMO2
PE=1 SV=2
Length = 720
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 78/149 (52%), Gaps = 5/149 (3%)
Query: 97 EELRDLISEQWKEMGWQGK-DPSTDFRGG--GFISLENLLYLARNFPKSFQDLLRKQEGD 153
E+ + + ++ +K +G+ +P+ DF G ++L+N+LYLA+ ++ ++ +
Sbjct: 339 EKRKAMYTKDYKMLGFTNHINPAMDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSR 398
Query: 154 RSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLM 213
E PF + + +T ML ++L + + P F + ++ AF+ L+ I +L+
Sbjct: 399 EDKHECPFGRSAIELTKMLCEILQVGEL-PNEGRNDYHPMFFT-HDRAFEELFGICIQLL 456
Query: 214 DHQWLAMRASYMDFNTVMKSTRRQLEREL 242
+ W MRA+ DFN VM+ R Q+ R L
Sbjct: 457 NKTWKEMRATAEDFNKVMQVVREQITRAL 485
>sp|Q96FG2|ELMD3_HUMAN ELMO domain-containing protein 3 OS=Homo sapiens GN=ELMOD3 PE=2
SV=2
Length = 381
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 13/160 (8%)
Query: 76 DSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYL 135
DS P H L+ ++ + L W+++G+QG +P+TD RG GF++L +LLYL
Sbjct: 165 DSQDPVHGRVLQTIYKKLTGSKFDCALHGNHWEDLGFQGANPATDLRGAGFLALLHLLYL 224
Query: 136 ---ARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFL 192
++ P + Q++ R + ++PF + VNIT + IQ L E + +
Sbjct: 225 VMDSKTLPMA-QEIFRLSR--HHIQQFPFCLMSVNITHIAIQALREECLSRECNRQQKVI 281
Query: 193 KFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMK 232
++ Y TF + H W R + D V+K
Sbjct: 282 PVVNS-------FYAATFLHLAHVWRTQRKTISDSGFVLK 314
>sp|Q91YP6|ELMD3_MOUSE ELMO domain-containing protein 3 OS=Mus musculus GN=Elmod3 PE=2
SV=1
Length = 381
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 13/160 (8%)
Query: 76 DSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYL 135
DS P H L+ ++ + L + W+++G+QG +P+TD RG GF++L +LLYL
Sbjct: 165 DSQNPTHGRVLQTIYKKLTGSKFDCALHGDHWEDLGFQGANPATDLRGAGFLALLHLLYL 224
Query: 136 ARNFPKSF---QDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFL 192
+ K+F Q++ R + ++PF + VNIT + IQ L E + +
Sbjct: 225 VMD-SKTFLMAQEIFRLSH--HHIQQFPFCLMSVNITRIAIQALREECLSRECNRRQKVI 281
Query: 193 KFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMK 232
++ Y TF + W + + +D V+K
Sbjct: 282 PVVNS-------FYAATFLHLARVWRTQQKTILDSGFVLK 314
>sp|Q58DT5|ELMD3_BOVIN ELMO domain-containing protein 3 OS=Bos taurus GN=ELMOD3 PE=2 SV=1
Length = 381
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 25/166 (15%)
Query: 76 DSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGF--------- 126
DS P H L+ ++ + L + W+++G+QG +P+TD RG GF
Sbjct: 165 DSQDPMHGRVLQTIYKKLTGSKFDCALHGDHWEDLGFQGTNPATDLRGAGFLALLHLLYL 224
Query: 127 ISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTM 186
+ L +AR ++LR + ++PF + VNIT + IQ L E +
Sbjct: 225 VMDSKTLLMAR-------EILRLSR--HHIQQFPFCLMSVNITRIAIQALREECLSRECN 275
Query: 187 VGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMK 232
+ ++ Y TF + H W + D V+K
Sbjct: 276 RQQKVIPVVNS-------FYAATFLRLAHIWRTQHKTISDSGFVLK 314
>sp|Q5XIQ2|ELMD3_RAT ELMO domain-containing protein 3 OS=Rattus norvegicus GN=Elmod3
PE=2 SV=1
Length = 356
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 15/161 (9%)
Query: 76 DSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYL 135
DS P H L+ ++ + L + W+++G+QG +P+TD RG GF++L +LLYL
Sbjct: 165 DSQNPTHGRVLQTIYKKLTGSKFDCALHGDHWEDLGFQGANPATDLRGTGFLALLHLLYL 224
Query: 136 ARNFPKSFQDLLRKQE----GDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATF 191
+ + LL QE + ++PF + VNIT + IQ L E +
Sbjct: 225 VMD----SKTLLMAQEILRLSHHHIQQFPFCLMSVNITRIAIQALREECLSRECNRRRKV 280
Query: 192 LKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMK 232
+ ++ Y TF + W + +D V+K
Sbjct: 281 IPVVNS-------FYAATFLHLARMWRTQHNTILDSGFVLK 314
>sp|Q54WH5|ELMOE_DICDI ELMO domain-containing protein E OS=Dictyostelium discoideum
GN=elmoE PE=4 SV=1
Length = 1677
Score = 48.1 bits (113), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 60 QEECLQRLQ-LRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPS 118
+E +QRL + +D + H+ L LW +A + SE W +G++ +P
Sbjct: 475 KELHMQRLHPINVD-----KVLSHQILLSDLWGSALSSYPFGGINSEHWLLLGFRSSNPM 529
Query: 119 TDFRGGGFISLENLLYLARNFPKSFQDLLRKQ 150
DF+ G ++L NL Y ++ + FQ LL Q
Sbjct: 530 EDFKNTGVLALRNLSYFSKQHLQPFQSLLLTQ 561
Score = 37.7 bits (86), Expect = 0.094, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 159 YPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWL 218
YP A +++T+ L + + + + + ++ + FD ++ TF L + W
Sbjct: 628 YPLATVAISLTYTLSNIFRIGRIND-SPIDSSIWDIAFSGSNWFDEIFVTTFNLFESLWH 686
Query: 219 AMRASYMDFNTVMKSTRRQLER 240
+ SY DF V+ TR +E+
Sbjct: 687 SEAHSYSDFPQVISHTREIIEK 708
>sp|Q09292|ELMD3_CAEEL ELMO domain-containing protein C56G7.3 OS=Caenorhabditis elegans
GN=C56G7.3 PE=4 SV=2
Length = 322
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 14/144 (9%)
Query: 103 ISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQD---LLRKQEGDRSVWEY 159
+ W +G+Q P TDFRG G + L + + P + LL E + ++
Sbjct: 172 VGAHWVTVGFQSATPHTDFRGCGVLGLLQMHTFTQRVPANLLRAIVLLATTEPN----DF 227
Query: 160 PFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLA 219
P AV +NIT +L+ L A+ F S ++ +C +K +
Sbjct: 228 PLAVVSINITSILLTQLKKGALDNFGNEIEGLYPFFSALHASAMCRFCSIYK-------S 280
Query: 220 MRASYMDFNTVMKSTRRQLERELL 243
+ + + T+ RQLE+ L
Sbjct: 281 QKCTLANTQTIFSEITRQLEKSPL 304
>sp|P06839|RAD3_YEAST DNA repair helicase RAD3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD3 PE=1 SV=1
Length = 778
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 69 LRIDVAYDSSIPEHREAL---RALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGG 125
L + +AY PEHR+ + R + EL +L+ + KE+G+Q DFRG G
Sbjct: 53 LSLTIAYQMHYPEHRKIIYCSRTMSEIEKALVELENLMDYRTKELGYQ-----EDFRGLG 107
Query: 126 FISLENL 132
S +NL
Sbjct: 108 LTSRKNL 114
>sp|Q9UF56|FXL17_HUMAN F-box/LRR-repeat protein 17 OS=Homo sapiens GN=FBXL17 PE=2 SV=3
Length = 701
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%)
Query: 161 FAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAM 220
+A+ + M I+ +D+ K T GAT + S++ L+ C + + L
Sbjct: 607 YALIAIGRYSMTIETVDVGWCKEITDQGATLIAQSSKSLRYLGLMRCDKVNEVTVEQLVQ 666
Query: 221 RASYMDFNTVMKSTRRQLER 240
+ ++ F+TV++ +R LER
Sbjct: 667 QYPHITFSTVLQDCKRTLER 686
>sp|Q6NZP1|ZRAB3_MOUSE DNA annealing helicase and endonuclease ZRANB3 OS=Mus musculus
GN=Zranb3 PE=1 SV=1
Length = 1069
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 65 QRLQLRIDVAYDSSIPEHREAL-RALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRG 123
Q L LR+ A S HR++L A W A P E+L +++ + WQ + G
Sbjct: 963 QELFLRMRDAPKS----HRKSLLNAAWTAKLPLEQLNEMLRNPGEGHFWQVDHIRPVYEG 1018
Query: 124 GGFISLENLLYL 135
GG SL+NL L
Sbjct: 1019 GGQCSLDNLQTL 1030
>sp|Q5FWF4|ZRAB3_HUMAN DNA annealing helicase and endonuclease ZRANB3 OS=Homo sapiens
GN=ZRANB3 PE=1 SV=2
Length = 1079
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 76 DSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYL 135
D+ + + L A W + P E+L ++I + WQ + GGG SL+NL L
Sbjct: 981 DAPKSQRKNLLYATWTSKLPLEQLNEMIRNPGEGHFWQVDHIKPVYGGGGQCSLDNLQTL 1040
Query: 136 A 136
Sbjct: 1041 C 1041
>sp|Q99N95|RM03_MOUSE 39S ribosomal protein L3, mitochondrial OS=Mus musculus GN=Mrpl3
PE=2 SV=1
Length = 348
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 57 TPAQEECLQRLQLRIDVAYDSSIPEHREALRAL-WNAAFPDEELRDLISEQWKEMGWQGK 115
P + CL +++ DS++P ++++ + L + FPD + +L + + E WQ
Sbjct: 289 VPGHKNCLVKIK-------DSTLPAYKDSCKNLPFPTYFPDGDEEELPEDLFDESVWQPS 341
Query: 116 DPSTDF 121
+PS F
Sbjct: 342 EPSITF 347
>sp|Q92503|S14L1_HUMAN SEC14-like protein 1 OS=Homo sapiens GN=SEC14L1 PE=1 SV=2
Length = 715
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 55 DLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQ--WKEMG- 111
DLTP QE CL RL+ + + IP+ LR L F ++ R+++ + W++
Sbjct: 250 DLTPLQESCLIRLRQWLQETHKGKIPKDEHILRFLRARDFNIDKAREIMCQSLTWRKQHQ 309
Query: 112 -------WQGKDPSTDFRGGGF 126
W D+ GG+
Sbjct: 310 VDYILETWTPPQVLQDYYAGGW 331
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,903,438
Number of Sequences: 539616
Number of extensions: 3948722
Number of successful extensions: 7925
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 7865
Number of HSP's gapped (non-prelim): 45
length of query: 261
length of database: 191,569,459
effective HSP length: 115
effective length of query: 146
effective length of database: 129,513,619
effective search space: 18908988374
effective search space used: 18908988374
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)