Query 024877
Match_columns 261
No_of_seqs 162 out of 390
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:05:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2998 Uncharacterized conser 100.0 6.3E-66 1.4E-70 462.9 17.0 254 1-261 37-302 (302)
2 PF04727 ELMO_CED12: ELMO/CED- 100.0 6.8E-50 1.5E-54 339.2 14.1 168 63-232 2-170 (170)
3 KOG2999 Regulator of Rac1, req 100.0 2.3E-32 5E-37 261.9 12.4 199 53-254 275-487 (713)
4 PF08262 Lem_TRP: Leucophaea m 38.2 13 0.00028 17.1 0.3 6 109-114 3-8 (10)
5 PHA02819 hypothetical protein; 36.5 59 0.0013 23.9 3.6 32 203-240 2-33 (71)
6 KOG4404 Tandem pore domain K+ 34.6 48 0.001 31.5 3.7 86 58-149 36-143 (350)
7 PHA02650 hypothetical protein; 32.0 71 0.0015 24.0 3.5 33 203-241 2-34 (81)
8 PHA02844 putative transmembran 31.6 73 0.0016 23.7 3.5 33 203-241 2-34 (75)
9 PHA02975 hypothetical protein; 31.5 78 0.0017 23.2 3.5 32 203-240 2-33 (69)
10 PF03735 ENT: ENT domain; Int 28.6 95 0.0021 22.9 3.7 32 56-91 26-57 (73)
11 PHA02692 hypothetical protein; 25.4 1.1E+02 0.0025 22.4 3.6 33 203-241 2-34 (70)
12 KOG2412 Nuclear-export-signal 24.0 4.6E+02 0.0099 26.8 8.5 46 126-175 377-423 (591)
13 PF11588 DUF3243: Protein of u 23.7 29 0.00064 26.2 0.3 27 70-97 41-67 (81)
No 1
>KOG2998 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.3e-66 Score=462.94 Aligned_cols=254 Identities=51% Similarity=0.822 Sum_probs=229.6
Q ss_pred CCCCCCceEEEe-ecccCCCCCCccCCC-----CCchhhhcc-----cccccccccccCCCCCCCCCcHHHHHHHHHHHH
Q 024877 1 MDERGGSFVAVR-RISQGLDRGNTCHST-----SGSAAWLGR-----GLSCVCAQRRESDPRPSFDLTPAQEECLQRLQL 69 (261)
Q Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~-----~~~c~~~~~~~~~~~~~~~L~~~Q~~~L~~L~~ 69 (261)
|++.+|..+||+ +.|.+...-..-..+ .|..+|+|+ ++.|.+...+..+...+..+.+.|+++++.+++
T Consensus 37 ~~~~~g~~ra~~~e~sl~~~~~~~~~~ass~~~~~~~~~~~~v~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~l~~~~e~ 116 (302)
T KOG2998|consen 37 TDAYEGASRAVRTETSLGQEKPLLGSTASSEAPPGLISFLGRVMVDKGIKNIVDPNRRIDLAACRHLIPGYRELLQRLEE 116 (302)
T ss_pred hcCCCCCcceeecchhhhhhhhhhhcccccccChhhhhhhHHHHHHhccccCCCcccchhhhhccccccCcHHHHHHHHH
Confidence 567889999988 555554332222111 889999999 999999999999998999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHhCCCcccchhhhhhHhHhcCCCCCCCCCCCcchhhhHhhHHHHHhhChHHHHHHHHh
Q 024877 70 RIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRK 149 (261)
Q Consensus 70 ~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~lGFQg~dP~TDFRg~GiLgL~~LlyF~~~~~~~~~~il~~ 149 (261)
+.++|||.+|++|+++|++||+.++|+++++++++++|++|||||+||+|||||+|+|||+||+|||++||+.+++++.+
T Consensus 117 ~~~~~yDs~n~~H~e~L~~lwk~~~p~~~l~~lvs~qW~emGfQG~dPsTDFRG~GfL~LeNLlyFa~~~~~~aq~lL~~ 196 (302)
T KOG2998|consen 117 LRQEPYDSDNPDHEELLLDLWKLLYPDKELPGLVSKQWKEMGFQGADPSTDFRGMGFLGLENLLYFARTYPTSAQRLLLK 196 (302)
T ss_pred HHhccCCCCChhHHHHHHHHHHHhCCCCccchhHHHHHHHhccCCCCCCcccccchHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccHHHHHHHHHHHHHHHhhhccCC-CccccccceeeccccchhhHHHHHHHHHHHHHHHHHhCCCChhcHH
Q 024877 150 QEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVK-PRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFN 228 (261)
Q Consensus 150 q~s~~~~~~yPFAva~INiT~~L~~~L~~~~~~-~~~~~~~~f~~ll~~~~~~F~eLy~~~f~~f~~~W~~~~at~mdF~ 228 (261)
|. ++.|+|||||||||||+|++++|+.++.+ +.++....| +++.+|+.|||++|..||++|+++++||||||
T Consensus 197 s~--~~r~eYpfAVvgINIT~m~~qmL~~eal~~~~~~~~~~~-----~~~~~F~~lYc~af~~~d~~Wl~~~~simefn 269 (302)
T KOG2998|consen 197 SR--HPRWEYPFAVVGINITFMAIQMLDLEALKKHFNNIVKVF-----ETEPAFDLLYCYAFLEFDKQWLEQRATIMEFN 269 (302)
T ss_pred cC--CCccCCceEEEeecHHHHHHHHHHhhhcccccccccccc-----ccHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 75 55699999999999999999999999884 434333333 77899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCccccccC
Q 024877 229 TVMKSTRRQLERELLLEDVTRLEDLPSYSLLSR 261 (261)
Q Consensus 229 ~Vl~~~r~ql~r~L~~~~~~~i~~~p~~~~~~~ 261 (261)
.|++++|.|++++|++.|+..+.|+|+|++|.+
T Consensus 270 ~Vlk~~~~qler~L~~~d~~~~~~lp~~~~L~~ 302 (302)
T KOG2998|consen 270 TVLKSFRRQLERELSLDDVLLITDLPAFNLLLQ 302 (302)
T ss_pred HHHHHHHHHHHHhhhhhhhcccccchhhhhhcC
Confidence 999999999999999999999999999999964
No 2
>PF04727 ELMO_CED12: ELMO/CED-12 family; InterPro: IPR006816 This entry represents the ELMO (EnguLfment and Cell MOtility) domain, which is found in a number of eukaryotic proteins involved in the cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility, including CED-12, ELMO-1 and ELMO-2. ELMO-1 and ELMO-2 are components of signalling pathways that regulate phagocytosis and cell migration and are mammalian orthologues of the Caenorhabditis elegans gene, ced-12 that is required for the engulfment of dying cells and cell migration. ELMO-1/2 act in association with DOCK1 and CRK. ELMO-1/2 interact with the SH3-domain of DOCK1 via an SH3-binding site to enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. ELMO-1/2 could be part of a complex with DOCK1 and Rac1 that could be required to activate Rac Rho small GTPases. Regulatory GTPases in the Ras superfamily employ a cycle of alternating GTP binding and hydrolysis, controlled by guanine nucleotide exchange factors and GTPase-activating proteins (GAPs), as essential features of their actions in cells. Within the Ras superfamily, the Arf family is composed of 30 members, including 22 Arf-like (Arl) proteins. The ELMO domain has been proposed to be a GAP domain for ARL2 and other members of the Arf family [].; GO: 0006909 phagocytosis, 0005856 cytoskeleton
Probab=100.00 E-value=6.8e-50 Score=339.24 Aligned_cols=168 Identities=43% Similarity=0.767 Sum_probs=151.9
Q ss_pred HHHHHHHhhcccCCCCCHHHHHHHHHHHHHhCCCcccchhhhhhHhHhcCCCCCCCCCCCcchhhhHhhHHHHHhhChHH
Q 024877 63 CLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPKS 142 (261)
Q Consensus 63 ~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~lGFQg~dP~TDFRg~GiLgL~~LlyF~~~~~~~ 142 (261)
.|+.|+.++++|||++|++|+++|++||++++++.+.+++.+++|++|||||+||+|||||+|+|||+||+||+++||+.
T Consensus 2 ~l~~l~~~~~~~~d~~~~~h~~~L~~Lw~~~~~~~~~~~~~~~~W~~lGFQ~~dP~tDFR~~G~LgL~~L~yf~~~~~~~ 81 (170)
T PF04727_consen 2 TLNLLRALAKTPFDPENPEHEELLQELWNALFPDEPPFSRISEHWKELGFQGEDPATDFRGMGLLGLDCLLYFAENYPDE 81 (170)
T ss_pred hHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCCccCCcCccHHHHhCCCCCCcHHHHhhhhHHHHHHHHHHHHHChHH
Confidence 57889999999999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHhhhccCCCccccccceeec-cccchhhHHHHHHHHHHHHHHHHHhCC
Q 024877 143 FQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKF-LSENESAFDLLYCITFKLMDHQWLAMR 221 (261)
Q Consensus 143 ~~~il~~q~s~~~~~~yPFAva~INiT~~L~~~L~~~~~~~~~~~~~~f~~l-l~~~~~~F~eLy~~~f~~f~~~W~~~~ 221 (261)
+++|+.++.++.+..+||||+||||||.+|+++|+++...+.... .+... +++.+.+|++|||++|.+|+++|++++
T Consensus 82 ~~~~l~~~~~~~~~~~~Pfa~~~invt~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~~~f~elf~~~f~~f~~~W~~~~ 159 (170)
T PF04727_consen 82 FRRILREQSSRSDENWYPFAVASINVTSLLCELLKLGALDSEFYK--RINFLSFFSSLEAFEELFCACFQLFDRTWKEMN 159 (170)
T ss_pred HHHHHHHccCcccccccHHHHHHHHHHHHHHHHHhhcccCHHHhh--cccccccCccHHHHHHHHHHHHHHHHHHHccCC
Confidence 999999988776678999999999999999999999765433322 22222 557788999999999999999999999
Q ss_pred CChhcHHHHHH
Q 024877 222 ASYMDFNTVMK 232 (261)
Q Consensus 222 at~mdF~~Vl~ 232 (261)
+++|||++|++
T Consensus 160 at~~dF~~V~~ 170 (170)
T PF04727_consen 160 ATIMDFNKVLK 170 (170)
T ss_pred CCHHHHHhhcC
Confidence 99999999975
No 3
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=99.98 E-value=2.3e-32 Score=261.91 Aligned_cols=199 Identities=27% Similarity=0.500 Sum_probs=182.1
Q ss_pred CCCCcHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHhCCCccc-----------chhhhhhHhHhcCCC-CCCCCC
Q 024877 53 SFDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEEL-----------RDLISEQWKEMGWQG-KDPSTD 120 (261)
Q Consensus 53 ~~~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~-----------~~~~~~~Wk~lGFQg-~dP~TD 120 (261)
.++|+.+|...+..+..|+.++.|+.+.+..+.++.+-..+|.++.- .....+..|++||-. .||+.|
T Consensus 275 ~~~lyvlq~L~~glle~Rm~~~md~~~q~qr~~i~~lr~iaf~~~~~~~~~g~~~e~rk~l~~~~ykklgf~n~~npa~d 354 (713)
T KOG2999|consen 275 PIQLYVLQVLTLGLLEVRMRTKMDPQDQVQRELISELRRIAFDDESEPSRRGGGAEVRKILDIESYKKLGFENRINPAQD 354 (713)
T ss_pred hHHHHHHHHHHHhhhHHhhhcccchhhHHHHHHHHHHHhcCcccccccccCCcchhhhhhhhHHHHHhhcccccCChHHh
Confidence 46899999999999999999999999999999999999999976432 235678999999998 899999
Q ss_pred CC--cchhhhHhhHHHHHhhChHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHhhhccCCCccccccceeeccccc
Q 024877 121 FR--GGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSEN 198 (261)
Q Consensus 121 FR--g~GiLgL~~LlyF~~~~~~~~~~il~~q~s~~~~~~yPFAva~INiT~~L~~~L~~~~~~~~~~~~~~f~~ll~~~ 198 (261)
|- .+|+|+|+||+|||++||+.+.+|+.++++|.++++|||+..+|.+|.|||++|+.+.+ .+.....|.++||.+
T Consensus 355 f~etppG~LAldnMvyFA~~~~~~y~riVlENSsRedkhecpfgr~sieltk~lcEilrVge~--p~E~~~df~pmfFth 432 (713)
T KOG2999|consen 355 FGETPPGRLALDNMVYFARNSPQDYRRIVLENSSREDKHECPFGRMSIELTKILCELLRVGEP--PDELDRDFIPMFFTH 432 (713)
T ss_pred cccCCchHHHHHHHHHHHHhCHHHHHHHHHhcccccccCcCCcCccHHHHHHHHHHHHhcCCC--chhhcCccceeeecC
Confidence 98 89999999999999999999999999999999999999999999999999999999864 344456799999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCCChhcHHHHHHHHHHHHHHhhccccccccccCC
Q 024877 199 ESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLP 254 (261)
Q Consensus 199 ~~~F~eLy~~~f~~f~~~W~~~~at~mdF~~Vl~~~r~ql~r~L~~~~~~~i~~~p 254 (261)
+..|+++||+|.++|+++|++|+||-.||++|+.+||+||.|+|... .++++++-
T Consensus 433 d~~Fee~FciciqLlnkTWKEMrAt~edf~KVmqVVrEQl~r~L~~k-p~sld~fk 487 (713)
T KOG2999|consen 433 DTPFEELFCICVQLLNRTWKEMRATAEDFEKVMQVVREQLRRALKRK-PQSLDQFK 487 (713)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHHhccC-CccHHHHH
Confidence 99999999999999999999999999999999999999999999966 77776543
No 4
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=38.20 E-value=13 Score=17.11 Aligned_cols=6 Identities=50% Similarity=1.248 Sum_probs=4.6
Q ss_pred HhcCCC
Q 024877 109 EMGWQG 114 (261)
Q Consensus 109 ~lGFQg 114 (261)
.|||||
T Consensus 3 smgf~g 8 (10)
T PF08262_consen 3 SMGFHG 8 (10)
T ss_pred cccccc
Confidence 478987
No 5
>PHA02819 hypothetical protein; Provisional
Probab=36.47 E-value=59 Score=23.91 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhcHHHHHHHHHHHHHH
Q 024877 203 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLER 240 (261)
Q Consensus 203 ~eLy~~~f~~f~~~W~~~~at~mdF~~Vl~~~r~ql~r 240 (261)
++||+++|=.| |..+-.||+..++.+|+-|..
T Consensus 2 DKLYaaiFGvF------msS~DdDFnnFI~VVksVLtd 33 (71)
T PHA02819 2 DKLYSAIFGVF------MSSSDDDFNNFINVVKSVLNN 33 (71)
T ss_pred hhHHHHHHHhh------hCCchhHHHHHHHHHHHHHcC
Confidence 67999999888 677888999999999887654
No 6
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=34.60 E-value=48 Score=31.46 Aligned_cols=86 Identities=23% Similarity=0.358 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHhCCCcccchhhhhhHh-------------HhcCCCCCCCCCCC--
Q 024877 58 PAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWK-------------EMGWQGKDPSTDFR-- 122 (261)
Q Consensus 58 ~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk-------------~lGFQg~dP~TDFR-- 122 (261)
..+++++++-+...+..|+-++++-+.+..-+-+ +.|. ..+.+|| .|||-.+.|+||--
T Consensus 36 ~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~-s~ph-----~ag~qWkF~GaFYFa~TVItTIGyGhstP~T~~GK~ 109 (350)
T KOG4404|consen 36 ARERERLERRLANLKRKYNLSEEDYRELERVILK-SEPH-----KAGPQWKFAGAFYFATTVITTIGYGHSTPSTDGGKA 109 (350)
T ss_pred HHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHh-cCcc-----ccccccccCcceEEEEEEEeeeccCCCCCCCcCcee
Confidence 4677788888888899999888877665554433 3333 4567887 57899999999933
Q ss_pred ---cchhhhHh-hHHH---HHhhChHHHHHHHHh
Q 024877 123 ---GGGFISLE-NLLY---LARNFPKSFQDLLRK 149 (261)
Q Consensus 123 ---g~GiLgL~-~Lly---F~~~~~~~~~~il~~ 149 (261)
.-|++|.. .|++ |.++-......|++.
T Consensus 110 Fcm~Yal~Gipl~lvmFqs~gERlnt~~ayil~~ 143 (350)
T KOG4404|consen 110 FCMFYALVGIPLTLVMFQSIGERLNTFVAYILRR 143 (350)
T ss_pred hhhhHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443 3343 345555555555543
No 7
>PHA02650 hypothetical protein; Provisional
Probab=32.00 E-value=71 Score=24.01 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhcHHHHHHHHHHHHHHh
Q 024877 203 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERE 241 (261)
Q Consensus 203 ~eLy~~~f~~f~~~W~~~~at~mdF~~Vl~~~r~ql~r~ 241 (261)
++||+++|=.| |..+-.||+..++.+|+-|...
T Consensus 2 DKLYaaiFGVF------msS~DdDFnnFI~VVkSVLtD~ 34 (81)
T PHA02650 2 DKLYAAIFGVF------MSSTDDDFNNFIDVVKSVLSDE 34 (81)
T ss_pred hhHHHHHHhhh------cCCcHHHHHHHHHHHHHHHcCC
Confidence 67999999888 6778889999999988766543
No 8
>PHA02844 putative transmembrane protein; Provisional
Probab=31.64 E-value=73 Score=23.66 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhcHHHHHHHHHHHHHHh
Q 024877 203 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERE 241 (261)
Q Consensus 203 ~eLy~~~f~~f~~~W~~~~at~mdF~~Vl~~~r~ql~r~ 241 (261)
++||+++|=.| |..+-.||+..++.+|+-|...
T Consensus 2 DKLYaaiFGVF------msS~DdDFnnFI~vVksVLtd~ 34 (75)
T PHA02844 2 DKLYTAIFGVF------LSSENEDFNNFIDVVKSVLSDD 34 (75)
T ss_pred hhHHHHHHhhh------cCCchHHHHHHHHHHHHHHcCC
Confidence 67899999888 6778889999999998776543
No 9
>PHA02975 hypothetical protein; Provisional
Probab=31.49 E-value=78 Score=23.16 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhcHHHHHHHHHHHHHH
Q 024877 203 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLER 240 (261)
Q Consensus 203 ~eLy~~~f~~f~~~W~~~~at~mdF~~Vl~~~r~ql~r 240 (261)
++||+++|=.| |..+-.||+..++.+|+-|..
T Consensus 2 dKLYaaiFGvF------msS~DdDF~nFI~vVksVLtd 33 (69)
T PHA02975 2 EKLFTGTYGVF------LESNDSDFEDFIDTIMHVLTG 33 (69)
T ss_pred hhHHHHHHHhh------cCCChHHHHHHHHHHHHHHcC
Confidence 57899999888 677888999999998876643
No 10
>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin. Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.
Probab=28.57 E-value=95 Score=22.86 Aligned_cols=32 Identities=34% Similarity=0.394 Sum_probs=23.3
Q ss_pred CcHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHH
Q 024877 56 LTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWN 91 (261)
Q Consensus 56 L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~ 91 (261)
|+..|+..|..|+...+ .+|.+|...|..+-+
T Consensus 26 lsweke~lLt~Lr~~L~----IS~e~H~~~l~~~~~ 57 (73)
T PF03735_consen 26 LSWEKEKLLTELRKELN----ISDEEHREELRRAVS 57 (73)
T ss_dssp --HHHHHHHHHHHHHTT------HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHhc
Confidence 89999999999987655 468899998887743
No 11
>PHA02692 hypothetical protein; Provisional
Probab=25.41 E-value=1.1e+02 Score=22.37 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhcHHHHHHHHHHHHHHh
Q 024877 203 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERE 241 (261)
Q Consensus 203 ~eLy~~~f~~f~~~W~~~~at~mdF~~Vl~~~r~ql~r~ 241 (261)
++||+++|=.| |..+-.||+..++.+|+-+...
T Consensus 2 DKLyaaifGVF------mss~DdDF~~Fi~vVksVLtDk 34 (70)
T PHA02692 2 DKLYAGVFGSF------LSNSDEDFEEFLNIVRTVMTEK 34 (70)
T ss_pred hhHHHHHHHhh------cCCCHHHHHHHHHHHHHHHcCC
Confidence 67899999888 5566669999999998877544
No 12
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=23.99 E-value=4.6e+02 Score=26.77 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=28.1
Q ss_pred hhhHh-hHHHHHhhChHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHH
Q 024877 126 FISLE-NLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQM 175 (261)
Q Consensus 126 iLgL~-~LlyF~~~~~~~~~~il~~q~s~~~~~~yPFAva~INiT~~L~~~ 175 (261)
.|+++ ||.++|+..-.....-+. + +++..||+|.+.+-|-...-++
T Consensus 377 pl~~~~~~~~iaka~V~Q~Etev~---~-~PeaAfPla~V~l~i~~q~Pdv 423 (591)
T KOG2412|consen 377 PLAYDWCLNFIAKAFVKQAETEVA---S-KPEAAFPLAKVILYIWSQFPDV 423 (591)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH---h-CCcccchHHHHHHHHHHhCchH
Confidence 35554 788888765433333332 2 3456799999988776654443
No 13
>PF11588 DUF3243: Protein of unknown function (DUF3243); InterPro: IPR021637 This family of proteins with unknown function includes uncharacterised proteins ymfJ and yflH. The family appears to be restricted to Firmicutes.; PDB: 3D0W_B.
Probab=23.67 E-value=29 Score=26.17 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=14.9
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHhCCCc
Q 024877 70 RIDVAYDSSIPEHREALRALWNAAFPDE 97 (261)
Q Consensus 70 ~~~~~~d~~~~~H~~~L~~Lw~~~~~~~ 97 (261)
-..-.+||.|++ +++|++||+.+..++
T Consensus 41 yLA~~vdP~N~E-erlLkELW~va~e~E 67 (81)
T PF11588_consen 41 YLAKNVDPKNPE-ERLLKELWDVADEEE 67 (81)
T ss_dssp HHHT-----SHH-HHHHHHHHHC--HHH
T ss_pred HHHhcCCCCCHH-HHHHHHHHHhCCHHH
Confidence 445678999985 689999999875543
Done!