Query 024877
Match_columns 261
No_of_seqs 162 out of 390
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 15:58:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uz3_A EMSY protein; chromatin 32.0 54 0.0018 24.7 4.1 32 55-90 42-73 (102)
2 3o39_A Periplasmic protein rel 26.2 1.1E+02 0.0036 23.1 5.0 37 53-89 15-51 (108)
3 2fmm_E Protein EMSY; ENT domai 24.7 81 0.0028 24.9 4.1 53 55-111 34-90 (133)
4 3d0w_A YFLH protein; GRAM-posi 22.4 33 0.0011 26.0 1.4 27 70-97 63-89 (104)
5 2k19_A Putative piscicolin 126 16.6 99 0.0034 23.1 2.9 22 54-75 75-96 (98)
6 1g2y_A Hepatocyte nuclear fact 14.6 53 0.0018 19.5 0.7 16 54-69 3-18 (32)
7 2zrr_A Mundticin KS immunity p 14.2 92 0.0032 24.0 2.2 22 54-75 95-116 (118)
8 3itf_A Periplasmic adaptor pro 13.8 1.9E+02 0.0064 22.9 4.1 43 50-92 40-82 (145)
9 2xoa_A Ryanodine receptor 1; m 13.0 3.9E+02 0.013 25.6 6.9 97 126-241 442-554 (559)
10 3oeo_A Spheroplast protein Y; 9.4 2.3E+02 0.0079 21.9 3.3 40 52-91 30-69 (138)
No 1
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=31.99 E-value=54 Score=24.74 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=26.0
Q ss_pred CCcHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHH
Q 024877 55 DLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALW 90 (261)
Q Consensus 55 ~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw 90 (261)
+|+..|+..|..|+.. +..+|.+|...|..+-
T Consensus 42 ~Lsweke~LLt~LR~~----L~IS~eeH~~elrr~~ 73 (102)
T 1uz3_A 42 DLTKEKKDLLGELSKV----LSISTERHRAEVRRAV 73 (102)
T ss_dssp SCCHHHHHHHHHHHHH----TTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH----hCCCcHHHHHHHHHhc
Confidence 3999999999999765 4557999998887763
No 2
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=26.16 E-value=1.1e+02 Score=23.11 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=26.7
Q ss_pred CCCCcHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHH
Q 024877 53 SFDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRAL 89 (261)
Q Consensus 53 ~~~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~L 89 (261)
..+||..|+..++.|.+......+....+-.+.|..|
T Consensus 15 ~L~LTd~Qk~qir~L~~~~r~~~~~~~~~~r~~m~~L 51 (108)
T 3o39_A 15 DLNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDI 51 (108)
T ss_dssp CSCCCHHHHHHHHHHHHTTTTSCCCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3789999999999999877666655554444444444
No 3
>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1
Probab=24.72 E-value=81 Score=24.88 Aligned_cols=53 Identities=25% Similarity=0.314 Sum_probs=34.4
Q ss_pred CCcHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHhCCC---ccc-chhhhhhHhHhc
Q 024877 55 DLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPD---EEL-RDLISEQWKEMG 111 (261)
Q Consensus 55 ~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~---~~~-~~~~~~~Wk~lG 111 (261)
+|+..|+..|..|+... ..++.+|...|.++-+.-.-. +.. .+..+.+|..-|
T Consensus 34 ~LSweke~LLt~LR~~L----~IS~eeH~~elrr~~sDe~l~~I~~~~~g~~s~~~W~~eg 90 (133)
T 2fmm_E 34 DLTKEKKDLLGELSKVL----SISTERHRAEVRRAVNDERLTTIAHNMSGPNSSSEWSIEG 90 (133)
T ss_dssp SCCHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHCHHHHHHHHHHHCSCCSHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHhhhHHHHHHHHHhhcCCcchHHHHHcc
Confidence 38999999999997654 557899998887764321000 000 113456888777
No 4
>3d0w_A YFLH protein; GRAM-positive bacterium, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Bacillus subtilis}
Probab=22.36 E-value=33 Score=25.99 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=21.0
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHhCCCc
Q 024877 70 RIDVAYDSSIPEHREALRALWNAAFPDE 97 (261)
Q Consensus 70 ~~~~~~d~~~~~H~~~L~~Lw~~~~~~~ 97 (261)
...-.+||.|++ +++|++||+.+..++
T Consensus 63 yLA~~vdP~N~E-erlLkELW~Va~eeE 89 (104)
T 3d0w_A 63 YLAKHEEPQNGE-EMLLQELWSVADEDE 89 (104)
T ss_dssp HHHTCCCCCSHH-HHHHHHHHHHCCHHH
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCHHH
Confidence 445678999985 689999999976543
No 5
>2k19_A Putative piscicolin 126 immunity protein; PISI, bacteriocin, immune system, antimicrobial protein; NMR {Carnobacterium maltaromaticum}
Probab=16.57 E-value=99 Score=23.09 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.0
Q ss_pred CCCcHHHHHHHHHHHHhhcccC
Q 024877 54 FDLTPAQEECLQRLQLRIDVAY 75 (261)
Q Consensus 54 ~~L~~~Q~~~L~~L~~~~~~~~ 75 (261)
..|++.|.+.|..|++..++-|
T Consensus 75 i~Ls~~qs~~lK~Lr~Ls~IRY 96 (98)
T 2k19_A 75 VTLSDYQSKKLKELTSISNIRY 96 (98)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCT
T ss_pred cccCHHHHHHHHHHHHHHhhhc
Confidence 5699999999999999887765
No 6
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=14.60 E-value=53 Score=19.50 Aligned_cols=16 Identities=31% Similarity=0.208 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHHHH
Q 024877 54 FDLTPAQEECLQRLQL 69 (261)
Q Consensus 54 ~~L~~~Q~~~L~~L~~ 69 (261)
.+|++.|++.|..|-.
T Consensus 3 skLs~LQ~eLL~aLL~ 18 (32)
T 1g2y_A 3 SKLSQLQTEMLAALLE 18 (32)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 4688999999988753
No 7
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=14.23 E-value=92 Score=24.04 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=16.2
Q ss_pred CCCcHHHHHHHHHHHHhhcccC
Q 024877 54 FDLTPAQEECLQRLQLRIDVAY 75 (261)
Q Consensus 54 ~~L~~~Q~~~L~~L~~~~~~~~ 75 (261)
..|++.|.+.|+.|++..++-|
T Consensus 95 I~LS~~qs~~LK~Lr~LSnIRY 116 (118)
T 2zrr_A 95 VSLNENQSKKLKELMSISNIRY 116 (118)
T ss_dssp CCCCHHHHHHHHHHHTTC----
T ss_pred cccCHHHHHHHHHHHHHHhhhc
Confidence 5699999999999998877654
No 8
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=13.80 E-value=1.9e+02 Score=22.85 Aligned_cols=43 Identities=16% Similarity=0.073 Sum_probs=28.7
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHH
Q 024877 50 PRPSFDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNA 92 (261)
Q Consensus 50 ~~~~~~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~ 92 (261)
.....+||+.|+..|+.|..........-+.+..+.|..|...
T Consensus 40 m~~~L~LTdeQkqqir~L~~~~r~~~~~~~~~~r~~l~~Li~a 82 (145)
T 3itf_A 40 MFDGISLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLVTA 82 (145)
T ss_dssp TTTTCCCCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTC
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHcc
Confidence 3446889999999999998765544444455555555555443
No 9
>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus}
Probab=13.02 E-value=3.9e+02 Score=25.56 Aligned_cols=97 Identities=19% Similarity=0.283 Sum_probs=42.3
Q ss_pred hhhHhhHHHHHhhChH---------------HHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHhhhccCCCccccccc
Q 024877 126 FISLENLLYLARNFPK---------------SFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGAT 190 (261)
Q Consensus 126 iLgL~~LlyF~~~~~~---------------~~~~il~~q~s~~~~~~yPFAva~INiT~~L~~~L~~~~~~~~~~~~~~ 190 (261)
...|+.|++|+..-.. .-|+++++| +|-.+|+++++.-.. .. ....
T Consensus 442 ~~~L~dLi~F~~~~~~~~~~~~~q~~~~~~r~RQkLlrEq----------------~il~ll~~il~~l~~--~~-~~~~ 502 (559)
T 2xoa_A 442 ILSLQDLIGYFEPPSEELQHEEKQSKLRSLRNRQSLFQEE----------------GMLSLVLNCIDRLNV--YT-TAAH 502 (559)
T ss_dssp HHHHHHHHHHTCCC---------CCHHHHHHHHHHHHHHT----------------THHHHHHHHHHHHTT--SC-C---
T ss_pred HHHHHHHHHHhcCccccccchhccccccccHHHHHHHhhh----------------chHHHHHHHHHHhhc--cC-chhh
Confidence 3467789999864332 235566654 355566666641111 11 1133
Q ss_pred eeeccccch-hhHHHHHHHHHHHHHHHHHhCCCChhcHHHHHHHHHHHHHHh
Q 024877 191 FLKFLSENE-SAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERE 241 (261)
Q Consensus 191 f~~ll~~~~-~~F~eLy~~~f~~f~~~W~~~~at~mdF~~Vl~~~r~ql~r~ 241 (261)
+..+..++. ..+.++...+++++-.+=+..+.+-..|.+-+..+-+||.+.
T Consensus 503 ~~~~~~~~~~~~~~~i~~~~Y~LL~~~i~~N~~N~~y~~~~l~~l~~~l~~~ 554 (559)
T 2xoa_A 503 FAEYAGEEAAESWKEIVNLLYELLASLIRGNRANCALFSTNLDWVVSKLDRL 554 (559)
T ss_dssp ---CCCSTGGGTHHHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccc
Confidence 444443343 568889999999999999988888888888888888888753
No 10
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=9.44 E-value=2.3e+02 Score=21.88 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=27.6
Q ss_pred CCCCCcHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHH
Q 024877 52 PSFDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWN 91 (261)
Q Consensus 52 ~~~~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~ 91 (261)
...+||+.|+..|+.|.+...........+-...|..|..
T Consensus 30 ~~L~LT~eQ~~qir~i~~~~r~~~~~~~~~~r~~l~~Li~ 69 (138)
T 3oeo_A 30 KDLNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDIIT 69 (138)
T ss_dssp CCSCCCTTHHHHHHHHHHHHSSSSCCCCTTHHHHHHHHHT
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3588999999999999877666555333344455666543
Done!