Query 024877
Match_columns 261
No_of_seqs 162 out of 390
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 15:58:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024877.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024877hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uz3a1 a.283.1.1 (A:13-102) E 27.1 25 0.0018 24.2 3.3 31 55-89 30-60 (90)
2 d2c1wa1 d.294.1.1 (A:6-289) En 18.1 67 0.0049 26.4 4.8 57 76-137 124-180 (284)
3 d1ya0a1 a.118.8.1 (A:1-497) SM 17.8 97 0.007 26.3 6.2 71 159-245 217-287 (497)
4 d1w36b1 c.37.1.19 (B:1-485) Ex 13.1 24 0.0018 29.4 0.7 40 77-118 388-428 (485)
5 d2a61a1 a.4.5.28 (A:5-143) Tra 12.6 1.8E+02 0.013 19.8 5.5 76 166-241 59-138 (139)
6 d2ifta1 c.66.1.46 (A:11-193) P 9.5 48 0.0035 24.7 1.2 28 121-149 51-84 (183)
7 d1myta_ a.1.1.2 (A:) Myoglobin 8.5 3E+02 0.022 18.8 5.6 48 56-114 99-146 (146)
8 d1dxea_ c.1.12.5 (A:) 2-dehydr 7.4 2.1E+02 0.015 22.3 4.5 52 69-120 179-236 (253)
9 d1olma1 a.5.3.1 (A:1-75) Super 6.4 2E+02 0.014 17.8 3.1 20 54-73 6-25 (75)
10 d1knza_ e.34.1.1 (A:) NSP3 hom 6.3 4.6E+02 0.033 18.9 6.0 42 201-243 8-49 (157)
No 1
>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.12 E-value=25 Score=24.20 Aligned_cols=31 Identities=29% Similarity=0.363 Sum_probs=25.6
Q ss_pred CCcHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHH
Q 024877 55 DLTPAQEECLQRLQLRIDVAYDSSIPEHREALRAL 89 (261)
Q Consensus 55 ~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~L 89 (261)
+|+..|+..|..|+.. +..+|.+|...|.++
T Consensus 30 ~lsweke~lLt~LR~~----L~IS~eeHr~elrr~ 60 (90)
T d1uz3a1 30 DLTKEKKDLLGELSKV----LSISTERHRAEVRRA 60 (90)
T ss_dssp SCCHHHHHHHHHHHHH----TTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH----hCCCcHHHHHHHHHh
Confidence 4999999999999765 556799999888776
No 2
>d2c1wa1 d.294.1.1 (A:6-289) EndoU {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=18.07 E-value=67 Score=26.35 Aligned_cols=57 Identities=14% Similarity=0.246 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccchhhhhhHhHhcCCCCCCCCCCCcchhhhHhhHHHHHh
Q 024877 76 DSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLAR 137 (261)
Q Consensus 76 d~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~lGFQg~dP~TDFRg~GiLgL~~LlyF~~ 137 (261)
..+..+..+.|+.||=..+....-....+.-++.+ |=|+- -+|.++.|+.|-++|..
T Consensus 124 ~~s~~~Fk~~L~~lWF~~Y~R~~g~~~dSSgFEHV-FvGE~----k~g~~V~G~HNWi~fy~ 180 (284)
T d2c1wa1 124 KPTRNDFKVQLYNIWFQLYSRAPGSRPDSCGFEHV-FVGES----KRGQEMMGLHNWVQFYL 180 (284)
T ss_dssp CSSHHHHHHHHHHHHHSCBCC--CCCCCBCHHHHH-TTSCS----SSSCSCCCCCCHHHHHH
T ss_pred CCCHHHHHHHHHHhcccCcccCCCCCCCCCCcceE-eeccc----cCCCcccceehHHHHHH
Confidence 34557889999999999876432222234566666 66751 25778999999999875
No 3
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.85 E-value=97 Score=26.26 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=40.3
Q ss_pred ccHHHHHHHHHHHHHHHhhhccCCCccccccceeeccccchhhHHHHHHHHHHHHHHHHHhCCCChhcHHHHHHHHHHHH
Q 024877 159 YPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQL 238 (261)
Q Consensus 159 yPFAva~INiT~~L~~~L~~~~~~~~~~~~~~f~~ll~~~~~~F~eLy~~~f~~f~~~W~~~~at~mdF~~Vl~~~r~ql 238 (261)
=||+.|--|+..++-...+..+..+.......+ ...|-.+++..|. +.+..+|..+.+.+.+++
T Consensus 217 ~~~~~a~~nL~~~~~~~~~~~~~~~~~~~~~~~-------~~~f~~~~~~l~~---------~~~~~~~~~~~~~~~~~l 280 (497)
T d1ya0a1 217 FPFPAASTNLQKALSKALESRDEVKTKWGVSDF-------IKAFIKFHGHVYL---------SKSLEKLSPLREKLEEQF 280 (497)
T ss_dssp BCCHHHHHHHHHHHHHHTTSCCCCCSSCCHHHH-------HHHHHHHHHHHHH---------TCCGGGHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhhhhhhccccccchH-------HHHHHHHHHHHHh---------CCchhhHHHHHHHHHHHH
Confidence 377888888777666555432211111000111 1234444443332 577888999999998888
Q ss_pred HHhhccc
Q 024877 239 ERELLLE 245 (261)
Q Consensus 239 ~r~L~~~ 245 (261)
...+...
T Consensus 281 ~~~l~~~ 287 (497)
T d1ya0a1 281 KELLFQK 287 (497)
T ss_dssp HHHHHTT
T ss_pred HHHHhcC
Confidence 8877643
No 4
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=13.12 E-value=24 Score=29.37 Aligned_cols=40 Identities=23% Similarity=0.522 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccchhhhhhHhHh-cCCCCCCC
Q 024877 77 SSIPEHREALRALWNAAFPDEELRDLISEQWKEM-GWQGKDPS 118 (261)
Q Consensus 77 ~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~l-GFQg~dP~ 118 (261)
.+|+.+.++|+.||... ++..+ -.+|+.|..| ||+|.||.
T Consensus 388 Dts~~Q~~ll~~L~~~~-~~~~l-~~VGD~kQSIY~FRgad~~ 428 (485)
T d1w36b1 388 DTDPQQYRIFRRIWHHQ-PETAL-LLIGDPKQAIYAFRGADIF 428 (485)
T ss_dssp GCCHHHHHHHHHHHTTC-TTCEE-EEEECGGGCCCGGGTCCHH
T ss_pred cCCHHHHHHHHHHHhCC-CCCeE-EEEecCcchhccccCCCHH
Confidence 46788889999998642 22112 1478899977 99998874
No 5
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=12.57 E-value=1.8e+02 Score=19.82 Aligned_cols=76 Identities=11% Similarity=0.076 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhhccCCC---ccccccceeeccccchhhHHHHHHHHHHHHHHHHHhC-CCChhcHHHHHHHHHHHHHHh
Q 024877 166 VNITFMLIQMLDLEAVKP---RTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAM-RASYMDFNTVMKSTRRQLERE 241 (261)
Q Consensus 166 INiT~~L~~~L~~~~~~~---~~~~~~~f~~ll~~~~~~F~eLy~~~f~~f~~~W~~~-~at~mdF~~Vl~~~r~ql~r~ 241 (261)
=+||.++-.+.+.+-... ....+...+.+-......+.++....-......+... ......|..++..+...+++-
T Consensus 59 ~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~le~~ 138 (139)
T d2a61a1 59 STVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVIERRENFIEKITSDLGKEKSSKILDYLKELKGVMERN 138 (139)
T ss_dssp HHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 467888877777663211 1112233444433334456666666666666666663 356778889999998888764
No 6
>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}
Probab=9.46 E-value=48 Score=24.66 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=21.0
Q ss_pred CCcchhhhHhhHH------HHHhhChHHHHHHHHh
Q 024877 121 FRGGGFISLENLL------YLARNFPKSFQDLLRK 149 (261)
Q Consensus 121 FRg~GiLgL~~Ll------yF~~~~~~~~~~il~~ 149 (261)
|-|+|.+||++|- +|++..++.+. ++.+
T Consensus 51 FaGsG~~glEalSRGA~~v~fVE~~~~a~~-~ik~ 84 (183)
T d2ifta1 51 FAGSGSLGFEALSRQAKKVTFLELDKTVAN-QLKK 84 (183)
T ss_dssp TCTTCHHHHHHHHTTCSEEEEECSCHHHHH-HHHH
T ss_pred ccCccceeeeeeeecceeeEEeecccchhh-hHhh
Confidence 7799999999994 47788877653 4443
No 7
>d1myta_ a.1.1.2 (A:) Myoglobin {Yellowfin tuna (Thunnus albacares) [TaxId: 8236]}
Probab=8.46 E-value=3e+02 Score=18.81 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=25.0
Q ss_pred CcHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHhCCCcccchhhhhhHhHhcCCC
Q 024877 56 LTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQG 114 (261)
Q Consensus 56 L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~lGFQg 114 (261)
...+.+..+..+++..+ + +++..++-.+++.. ......+.+++.||+|
T Consensus 99 f~~~~~~l~~~l~~~~g--~---t~~~~~AW~k~~~~------i~~~l~~~y~e~g~~~ 146 (146)
T d1myta_ 99 FKLISEVLVKVMHEKAG--L---DAGGQTALRNVMGI------IIADLEANYKELGFSG 146 (146)
T ss_dssp HHHHHHHHHHHHHHHSC--C---CHHHHHHHHHHHHH------HHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHCC--C---CHHHHHHHHHHHHH------HHHHHHHHHHHcCCCC
Confidence 34444445555544332 3 34444444444433 2344578899999986
No 8
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}
Probab=7.43 E-value=2.1e+02 Score=22.29 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=35.8
Q ss_pred HhhcccCCCCCHHHHHHHHHHHHHhCCC-ccc-----chhhhhhHhHhcCCCCCCCCC
Q 024877 69 LRIDVAYDSSIPEHREALRALWNAAFPD-EEL-----RDLISEQWKEMGWQGKDPSTD 120 (261)
Q Consensus 69 ~~~~~~~d~~~~~H~~~L~~Lw~~~~~~-~~~-----~~~~~~~Wk~lGFQg~dP~TD 120 (261)
.-++.|-+.++|++++++.++-+++... .+. ....-++|.+.||+=---.+|
T Consensus 179 ~slG~~g~~~~p~v~~ai~~v~~~~~~~gk~~g~~~~~~~~~~~~~~~G~~~i~~g~D 236 (253)
T d1dxea_ 179 AALGHLGNASHPDVQKAIQHIFNRASAHGKPSGILAPVEADARRYLEWGATFVAVGSD 236 (253)
T ss_dssp HHTTCTTCTTSHHHHHHHHHHHHHHHHTTCCEEEECCSHHHHHHHHHTTCCEEEEEEH
T ss_pred hhccCCCCCCChhHHHHHHHHHHHHHHcCCCeEEecCCHHHHHHHHHcCCCEEEehHH
Confidence 4567777899999999999998887532 221 123457999999985333334
No 9
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.36 E-value=2e+02 Score=17.82 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=16.9
Q ss_pred CCCcHHHHHHHHHHHHhhcc
Q 024877 54 FDLTPAQEECLQRLQLRIDV 73 (261)
Q Consensus 54 ~~L~~~Q~~~L~~L~~~~~~ 73 (261)
-+|++.|+..|..+++...-
T Consensus 6 gelt~~q~~~l~elr~~l~~ 25 (75)
T d1olma1 6 GDLSPRQKEALAKFRENVQD 25 (75)
T ss_dssp TBCCHHHHHHHHHHHHHHGG
T ss_pred ccCCHHHHHHHHHHHHHHHh
Confidence 46999999999999987654
No 10
>d1knza_ e.34.1.1 (A:) NSP3 homodimer {Simian 11 rotavirus [TaxId: 10923]}
Probab=6.28 E-value=4.6e+02 Score=18.88 Aligned_cols=42 Identities=7% Similarity=0.154 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCChhcHHHHHHHHHHHHHHhhc
Q 024877 201 AFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELL 243 (261)
Q Consensus 201 ~F~eLy~~~f~~f~~~W~~~~at~mdF~~Vl~~~r~ql~r~L~ 243 (261)
.|+.-|.+++......-..++.+| ||++|...++....-.+.
T Consensus 8 I~n~af~aA~~~~~s~l~~~gi~y-D~~ev~~r~k~k~d~~md 49 (157)
T d1knza_ 8 IINSSFEAAVVAATSALENMGIEY-DYQDIYSRVKNKFDFVMD 49 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHhhcceec
Confidence 466666777777777777777665 788898888876655443
Done!