BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024878
         (261 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WQK|A Chain A, Crystal Structure Of Sure Protein From Aquifex Aeolicus
 pdb|2WQK|B Chain B, Crystal Structure Of Sure Protein From Aquifex Aeolicus
          Length = 251

 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 92/177 (51%), Gaps = 13/177 (7%)

Query: 67  PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEI 126
           P  L+ N DG  SPG+  L EAL  + L  V V AP  + S  GHS+T  E + +   + 
Sbjct: 2   PTFLLVNDDGYFSPGINALREAL--KSLGRVVVVAPDRNLSGVGHSLTFTEPLKMRKIDT 59

Query: 127 NGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREAL 186
           +  T   + GTP DCV L     +    KP LV+SGIN G + G  + YSG V+GA E  
Sbjct: 60  DFYTV--IDGTPADCVHLGYR-VILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGR 116

Query: 187 ICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLNVEIP 243
           I G+PS++ S   +++      F++   VC+ ++      + +GI P    LNV IP
Sbjct: 117 ILGIPSIAFSAFGRENIM----FEEIAKVCVDIVKKV---LNEGI-PEDTYLNVNIP 165


>pdb|1J9J|A Chain A, Crystal Structure Analysis Of Sure Protein From T.Maritima
 pdb|1J9J|B Chain B, Crystal Structure Analysis Of Sure Protein From T.Maritima
 pdb|1J9K|A Chain A, Crystal Structure Of Sure Protein From T.Maritima In
           Complex With Tungstate
 pdb|1J9K|B Chain B, Crystal Structure Of Sure Protein From T.Maritima In
           Complex With Tungstate
 pdb|1J9L|A Chain A, Crystal Structure Of Sure Protein From T.Maritima In
           Complex With Vanadate
 pdb|1J9L|B Chain B, Crystal Structure Of Sure Protein From T.Maritima In
           Complex With Vanadate
          Length = 247

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 13/176 (7%)

Query: 69  LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEIN- 127
           +LVTN DGI+S G++ L E L  E  + V V AP  ++S +GHS+T+   + +    I+ 
Sbjct: 3   ILVTNDDGIQSKGIIVLAELLSEE--HEVFVVAPDKERSATGHSITIHVPLWMKKVFISE 60

Query: 128 GATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALI 187
              AY  +GTP DCV LA +  +    +  L++SG+NRG + G  + +SG V+GA E  +
Sbjct: 61  RVVAYSTTGTPADCVKLAYNVVMDK--RVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAM 118

Query: 188 CGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLNVEIP 243
             +PS++IS        +  DF+ A    +  +    ++    +     +LN+ +P
Sbjct: 119 MNIPSIAIS----SANYESPDFEGAARFLIDFL----KEFDFSLLDPFTMLNINVP 166


>pdb|3TY2|A Chain A, Structure Of A 5'-Nucleotidase (Sure) From Coxiella
           Burnetii
 pdb|3TY2|B Chain B, Structure Of A 5'-Nucleotidase (Sure) From Coxiella
           Burnetii
          Length = 261

 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 95/178 (53%), Gaps = 15/178 (8%)

Query: 69  LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEING 128
           LL++N DG+ + GL  L + L   G   V V AP  ++S + +S+TL   + + + E NG
Sbjct: 14  LLLSNDDGVYAKGLAILAKTLADLG--EVDVVAPDRNRSGASNSLTLNAPLHIKNLE-NG 70

Query: 129 ATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALIC 188
             +  V GTP DCV LA++G L     P  V++GIN G + G  ++YSG VA A E    
Sbjct: 71  XIS--VEGTPTDCVHLAITGVLPE--XPDXVVAGINAGPNLGDDVWYSGTVAAAXEGRFL 126

Query: 189 GVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLNVEIPTSP 246
           G+P+L++SL  +     E+    A  V   LI    + I K   P S +LN+ +P  P
Sbjct: 127 GLPALAVSLGGELFRYYET----AAKVVYQLI----QRIEKDPLPPSTILNINVPDLP 176


>pdb|1ILV|A Chain A, Crystal Structure Analysis Of The Tm107
 pdb|1ILV|B Chain B, Crystal Structure Analysis Of The Tm107
          Length = 247

 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 76/129 (58%), Gaps = 5/129 (3%)

Query: 69  LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEIN- 127
           +LVTN DGI+S G++ L E L  E  + V V AP  ++S +GHS+T+   +      I+ 
Sbjct: 3   ILVTNDDGIQSKGIIVLAELLSEE--HEVFVVAPDKERSATGHSITIHVPLWXKKVFISE 60

Query: 128 GATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALI 187
              AY  +GTP DCV LA +  +    +  L++SG+NRG + G  + +SG V+GA E   
Sbjct: 61  RVVAYSTTGTPADCVKLAYN--VVXDKRVDLIVSGVNRGPNXGXDILHSGTVSGAXEGAX 118

Query: 188 CGVPSLSIS 196
             +PS++IS
Sbjct: 119 XNIPSIAIS 127


>pdb|2E69|A Chain A, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Sulfate
 pdb|2E69|B Chain B, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Sulfate
 pdb|2E69|C Chain C, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Sulfate
 pdb|2E69|D Chain D, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Sulfate
 pdb|2E6B|A Chain A, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Magnesium And Tungstate
 pdb|2E6B|B Chain B, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Magnesium And Tungstate
 pdb|2E6B|C Chain C, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Magnesium And Tungstate
 pdb|2E6B|D Chain D, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Magnesium And Tungstate
 pdb|2E6C|A Chain A, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 Cocrystallized With
           Manganese And Amp
 pdb|2E6C|B Chain B, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 Cocrystallized With
           Manganese And Amp
 pdb|2E6C|C Chain C, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 Cocrystallized With
           Manganese And Amp
 pdb|2E6C|D Chain D, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 Cocrystallized With
           Manganese And Amp
 pdb|2E6E|A Chain A, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8
 pdb|2E6E|B Chain B, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8
 pdb|2E6E|C Chain C, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8
 pdb|2E6E|D Chain D, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8
 pdb|2E6G|A Chain A, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Phosphate
 pdb|2E6G|B Chain B, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Phosphate
 pdb|2E6G|C Chain C, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Phosphate
 pdb|2E6G|D Chain D, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Phosphate
 pdb|2E6G|E Chain E, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Phosphate
 pdb|2E6G|F Chain F, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Phosphate
 pdb|2E6G|G Chain G, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Phosphate
 pdb|2E6G|H Chain H, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Phosphate
 pdb|2E6G|I Chain I, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Phosphate
 pdb|2E6G|J Chain J, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Phosphate
 pdb|2E6G|K Chain K, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Phosphate
 pdb|2E6G|L Chain L, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Phosphate
          Length = 244

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/137 (40%), Positives = 80/137 (58%), Gaps = 14/137 (10%)

Query: 69  LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAV----SSA 124
           +LVTN DGI SPGL  L EA  + G   V V AP +++S +GH++T+   +      S  
Sbjct: 3   ILVTNDDGIYSPGLWALAEAASQFG--EVFVAAPDTEQSAAGHAITIAHPVRAYPHPSPL 60

Query: 125 EINGATAYEVSGTPVDCVSLALSGALFSWSKPL-LVISGINRGSSCGHHMFYSGVVAGAR 183
                 AY V GTP DCV+L L   LF    P+ LV+SG+N GS+ GH +++SG VA A+
Sbjct: 61  HAPHFPAYRVRGTPADCVALGLH--LFG---PVDLVLSGVNLGSNLGHEIWHSGTVAAAK 115

Query: 184 EALICGV--PSLSISLN 198
           +  + G+   + S+ LN
Sbjct: 116 QGYLFGLSAAAFSVPLN 132


>pdb|2E6H|A Chain A, Crystal Structure Of E37a Mutant Of The Stationary Phase
           Survival Protein Sure From Thermus Thermophilus Hb8
           Cocrystallized With Manganese And Amp
 pdb|2E6H|B Chain B, Crystal Structure Of E37a Mutant Of The Stationary Phase
           Survival Protein Sure From Thermus Thermophilus Hb8
           Cocrystallized With Manganese And Amp
 pdb|2E6H|C Chain C, Crystal Structure Of E37a Mutant Of The Stationary Phase
           Survival Protein Sure From Thermus Thermophilus Hb8
           Cocrystallized With Manganese And Amp
 pdb|2E6H|D Chain D, Crystal Structure Of E37a Mutant Of The Stationary Phase
           Survival Protein Sure From Thermus Thermophilus Hb8
           Cocrystallized With Manganese And Amp
          Length = 244

 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/137 (40%), Positives = 79/137 (57%), Gaps = 14/137 (10%)

Query: 69  LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAV----SSA 124
           +LVTN DGI SPGL  L EA  + G   V V AP + +S +GH++T+   +      S  
Sbjct: 3   ILVTNDDGIYSPGLWALAEAASQFG--EVFVAAPDTAQSAAGHAITIAHPVRAYPHPSPL 60

Query: 125 EINGATAYEVSGTPVDCVSLALSGALFSWSKPL-LVISGINRGSSCGHHMFYSGVVAGAR 183
                 AY V GTP DCV+L L   LF    P+ LV+SG+N GS+ GH +++SG VA A+
Sbjct: 61  HAPHFPAYRVRGTPADCVALGLH--LFG---PVDLVLSGVNLGSNLGHEIWHSGTVAAAK 115

Query: 184 EALICGV--PSLSISLN 198
           +  + G+   + S+ LN
Sbjct: 116 QGYLFGLSAAAFSVPLN 132


>pdb|2V4O|A Chain A, Crystal Structure Of Salmonella Typhimurium Sure At 2.75
           Angstrom Resolution In Monoclinic Form
 pdb|2V4O|B Chain B, Crystal Structure Of Salmonella Typhimurium Sure At 2.75
           Angstrom Resolution In Monoclinic Form
 pdb|2V4O|C Chain C, Crystal Structure Of Salmonella Typhimurium Sure At 2.75
           Angstrom Resolution In Monoclinic Form
 pdb|2V4O|D Chain D, Crystal Structure Of Salmonella Typhimurium Sure At 2.75
           Angstrom Resolution In Monoclinic Form
          Length = 267

 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 97/179 (54%), Gaps = 16/179 (8%)

Query: 69  LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEING 128
           +L++N DG+ +PG+  L +AL RE   +V V AP  ++S + +S+TL  ++   + + NG
Sbjct: 17  ILLSNDDGVHAPGIQTLAKAL-RE-FADVQVVAPDRNRSGASNSLTLESSLRTFTFD-NG 73

Query: 129 ATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALIC 188
             A ++ GTP DCV L ++  +    +P +V+SGIN G + G  + YSG VA A E    
Sbjct: 74  DIAVQM-GTPTDCVYLGVNALMRP--RPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHL 130

Query: 189 GVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLNVEIPTSPL 247
           G P+L++SLN      Q  D   AV+  L       R + +       +LNV +P  PL
Sbjct: 131 GFPALAVSLN----GYQHYDTAAAVTCAL------LRGLSREPLRTGRILNVNVPDLPL 179


>pdb|2V4N|A Chain A, Crystal Structure Of Salmonella Typhimurium Sure At 1.7
           Angstrom Resolution In Orthorhombic Form
          Length = 254

 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 97/179 (54%), Gaps = 16/179 (8%)

Query: 69  LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEING 128
           +L++N DG+ +PG+  L +AL RE   +V V AP  ++S + +S+TL  ++   + + NG
Sbjct: 4   ILLSNDDGVHAPGIQTLAKAL-RE-FADVQVVAPDRNRSGASNSLTLESSLRTFTFD-NG 60

Query: 129 ATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALIC 188
             A ++ GTP DCV L ++  +    +P +V+SGIN G + G  + YSG VA A E    
Sbjct: 61  DIAVQM-GTPTDCVYLGVNALMRP--RPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHL 117

Query: 189 GVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLNVEIPTSPL 247
           G P+L++SLN      Q  D   AV+  L       R + +       +LNV +P  PL
Sbjct: 118 GFPALAVSLN----GYQHYDTAAAVTCAL------LRGLSREPLRTGRILNVNVPDLPL 166


>pdb|1L5X|A Chain A, The 2.0-Angstrom Resolution Crystal Structure Of A
           Survival Protein E (Sure) Homolog From Pyrobaculum
           Aerophilum
 pdb|1L5X|B Chain B, The 2.0-Angstrom Resolution Crystal Structure Of A
           Survival Protein E (Sure) Homolog From Pyrobaculum
           Aerophilum
          Length = 280

 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 9/137 (6%)

Query: 69  LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEING 128
           +LVTN DG+ SPGL  L +  +  G  +V V AP+S KS +G  +TL + +     ++ G
Sbjct: 3   ILVTNDDGVHSPGLRLLYQFALSLG--DVDVVAPESPKSATGLGITLHKPLRXYEVDLCG 60

Query: 129 ATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHH-MFYSGVVAGAREALI 187
             A   SGTP D V LA  G    +    +V+SGIN G +     +  SG +  A +A +
Sbjct: 61  FRAIATSGTPSDTVYLATFGLGRKYD---IVLSGINLGDNTSLQVILSSGTLGAAFQAAL 117

Query: 188 CGVPSLSISL---NWKK 201
            G+P+L+ S    NW +
Sbjct: 118 LGIPALAYSAYLENWNE 134


>pdb|4EQB|A Chain A, 1.5 Angstrom Crystal Structure Of SpermidinePUTRESCINE ABC
           Transporter Substrate-Binding Protein From Streptococcus
           Pneumoniae Strain Canada Mdr_19a In Complex With Calcium
           And Hepes.
 pdb|4EQB|B Chain B, 1.5 Angstrom Crystal Structure Of SpermidinePUTRESCINE ABC
           Transporter Substrate-Binding Protein From Streptococcus
           Pneumoniae Strain Canada Mdr_19a In Complex With Calcium
           And Hepes
          Length = 330

 Score = 29.3 bits (64), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 178 VVAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKG 230
           +  GARE L  G+ SL  SLN  KD  Q  +  D +    P I A   D  KG
Sbjct: 145 LFDGAREVLGLGLNSLGYSLN-SKDPQQLEETVDKLYKLTPNIKAIVADEMKG 196


>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
 pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
 pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
 pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
           Obtained By Multi- Crystals Composite Data Collection
           Technique (10% Dose)
 pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
           Obtained By Multi- Crystals Composite Data Collection
           Technique (10% Dose)
 pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
           Obtained By Multi- Crystals Composite Data Collection
           Technique (10% Dose)
 pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
           Obtained By Multi- Crystals Composite Data Collection
           Technique (20% Dose)
 pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
           Obtained By Multi- Crystals Composite Data Collection
           Technique (20% Dose)
 pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
           Obtained By Multi- Crystals Composite Data Collection
           Technique (20% Dose)
 pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
           Obtained By Multi- Crystals Composite Data Collection
           Technique (60% Dose)
 pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
           Obtained By Multi- Crystals Composite Data Collection
           Technique (60% Dose)
 pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
           Obtained By Multi- Crystals Composite Data Collection
           Technique (60% Dose)
 pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
           Obtained By Multi- Crystals Composite Data Collection
           Technique (90% Dose)
 pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
           Obtained By Multi- Crystals Composite Data Collection
           Technique (90% Dose)
 pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
           Obtained By Multi- Crystals Composite Data Collection
           Technique (90% Dose)
          Length = 495

 Score = 29.3 bits (64), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 100 CAPQSDKSVSGHSVTLRETIAVSSAEI 126
           C P  D S+ GH +T+ ET  V S E+
Sbjct: 208 CDPNYDFSIDGHDMTIIETDGVDSQEL 234


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.131    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,655,440
Number of Sequences: 62578
Number of extensions: 240637
Number of successful extensions: 397
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 364
Number of HSP's gapped (non-prelim): 16
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)