Query 024878
Match_columns 261
No_of_seqs 173 out of 1107
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 08:07:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024878.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024878hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01975 SurE: Survival protei 100.0 4.2E-65 9.1E-70 447.6 17.8 188 67-261 1-193 (196)
2 PRK13932 stationary phase surv 100.0 2.4E-63 5.3E-68 452.4 21.9 184 64-259 3-188 (257)
3 PRK13931 stationary phase surv 100.0 1E-62 2.2E-67 449.3 21.5 189 67-259 1-193 (261)
4 PRK13933 stationary phase surv 100.0 1.1E-62 2.5E-67 447.2 21.7 183 67-259 1-186 (253)
5 TIGR00087 surE 5'/3'-nucleotid 100.0 1.1E-62 2.5E-67 445.0 21.6 185 67-259 1-189 (244)
6 PRK13935 stationary phase surv 100.0 1.7E-62 3.7E-67 446.0 21.2 181 67-259 1-183 (253)
7 COG0496 SurE Predicted acid ph 100.0 1.1E-62 2.4E-67 446.1 19.9 183 67-259 1-185 (252)
8 PRK00346 surE 5'(3')-nucleotid 100.0 2.8E-62 6E-67 444.0 21.5 183 67-260 1-184 (250)
9 PRK13934 stationary phase surv 100.0 3.1E-61 6.6E-66 440.3 21.0 182 67-259 1-189 (266)
10 cd03784 GT1_Gtf_like This fami 91.9 0.94 2E-05 42.4 8.7 38 67-105 1-39 (401)
11 PLN02846 digalactosyldiacylgly 90.1 1.9 4.1E-05 43.1 9.4 41 64-105 2-48 (462)
12 PF04007 DUF354: Protein of un 89.0 1 2.2E-05 43.2 6.3 102 67-197 1-111 (335)
13 cd03814 GT1_like_2 This family 85.1 15 0.00032 32.2 11.0 29 78-107 16-44 (364)
14 TIGR00661 MJ1255 conserved hyp 84.9 3.2 6.9E-05 38.3 7.0 31 154-198 92-122 (321)
15 PRK00726 murG undecaprenyldiph 84.4 7.5 0.00016 35.7 9.2 37 67-104 2-39 (357)
16 TIGR01133 murG undecaprenyldip 84.2 7.6 0.00016 35.2 9.0 36 68-104 2-38 (348)
17 PF14336 DUF4392: Domain of un 84.1 1.7 3.6E-05 40.8 4.8 108 80-197 63-183 (291)
18 cd03785 GT1_MurG MurG is an N- 82.8 11 0.00023 34.2 9.4 36 68-104 1-37 (350)
19 TIGR01426 MGT glycosyltransfer 81.8 2.7 5.9E-05 39.5 5.3 24 82-106 12-35 (392)
20 PF13439 Glyco_transf_4: Glyco 81.2 3.1 6.8E-05 32.8 4.8 42 69-111 1-46 (177)
21 PRK10307 putative glycosyl tra 75.5 4.9 0.00011 37.8 5.0 36 67-103 1-41 (412)
22 PRK00654 glgA glycogen synthas 74.4 33 0.00072 33.4 10.5 24 82-106 23-46 (466)
23 PLN02871 UDP-sulfoquinovose:DA 74.1 12 0.00026 36.3 7.3 41 64-105 56-102 (465)
24 cd03802 GT1_AviGT4_like This f 72.5 8.1 0.00017 34.2 5.3 39 67-106 1-48 (335)
25 PF07075 DUF1343: Protein of u 71.0 11 0.00023 36.8 6.2 111 69-197 2-119 (365)
26 cd03820 GT1_amsD_like This fam 69.8 33 0.00071 29.4 8.4 38 68-106 1-42 (348)
27 PRK09864 putative peptidase; P 69.4 12 0.00026 36.3 6.1 143 73-222 165-340 (356)
28 cd03816 GT1_ALG1_like This fam 67.6 14 0.00031 35.3 6.2 38 64-103 3-40 (415)
29 TIGR03107 glu_aminopep glutamy 66.6 15 0.00033 35.3 6.2 133 81-222 182-340 (350)
30 PLN02316 synthase/transferase 65.1 57 0.0012 36.2 10.7 120 65-195 586-744 (1036)
31 PF13579 Glyco_trans_4_4: Glyc 64.5 7.9 0.00017 29.9 3.2 98 82-198 7-105 (160)
32 PRK06849 hypothetical protein; 63.2 12 0.00025 35.6 4.7 37 64-104 2-38 (389)
33 PF03033 Glyco_transf_28: Glyc 61.9 7.6 0.00017 30.6 2.7 24 82-106 15-38 (139)
34 cd03805 GT1_ALG2_like This fam 59.4 12 0.00027 34.2 4.0 37 67-104 1-40 (392)
35 COG0726 CDA1 Predicted xylanas 58.5 18 0.0004 31.0 4.7 36 66-101 64-100 (267)
36 cd03825 GT1_wcfI_like This fam 58.4 12 0.00026 33.4 3.6 38 67-105 1-41 (365)
37 TIGR01918 various_sel_PB selen 58.2 16 0.00035 36.5 4.8 41 153-196 74-114 (431)
38 PRK12446 undecaprenyldiphospho 57.1 86 0.0019 29.7 9.4 35 153-198 89-123 (352)
39 PRK15405 ethanolamine utilizat 56.6 68 0.0015 29.4 8.1 102 80-187 46-201 (217)
40 TIGR00045 glycerate kinase. Th 56.2 60 0.0013 31.9 8.3 80 143-227 274-368 (375)
41 TIGR01917 gly_red_sel_B glycin 56.0 18 0.00038 36.2 4.6 41 153-196 74-114 (431)
42 cd03141 GATase1_Hsp31_like Typ 55.9 13 0.00029 32.9 3.5 32 74-106 17-48 (221)
43 cd03800 GT1_Sucrose_synthase T 55.7 1.1E+02 0.0023 27.8 9.4 25 80-105 25-49 (398)
44 cd03791 GT1_Glycogen_synthase_ 54.9 31 0.00067 33.1 6.1 24 82-106 22-45 (476)
45 PRK11780 isoprenoid biosynthes 52.1 19 0.00042 32.3 3.9 39 66-105 3-44 (217)
46 PRK10342 glycerate kinase I; P 49.1 93 0.002 30.7 8.3 43 154-198 283-325 (381)
47 PF13477 Glyco_trans_4_2: Glyc 47.2 32 0.00068 26.9 4.1 102 69-197 3-107 (139)
48 cd06167 LabA_like LabA_like pr 46.5 35 0.00075 27.6 4.3 30 68-103 103-132 (149)
49 PLN00016 RNA-binding protein; 46.5 29 0.00062 32.7 4.3 40 64-104 50-90 (378)
50 PLN02939 transferase, transfer 45.8 87 0.0019 34.6 8.2 41 64-105 479-526 (977)
51 PRK08220 2,3-dihydroxybenzoate 44.8 1.1E+02 0.0025 26.1 7.5 79 64-163 6-84 (252)
52 COG1817 Uncharacterized protei 44.1 16 0.00034 35.5 2.1 22 175-198 259-280 (346)
53 PRK09932 glycerate kinase II; 43.2 1.3E+02 0.0028 29.7 8.3 43 154-198 283-325 (381)
54 cd03817 GT1_UGDG_like This fam 43.1 38 0.00082 29.5 4.3 28 78-106 16-43 (374)
55 TIGR03449 mycothiol_MshA UDP-N 43.0 66 0.0014 29.8 6.1 25 80-105 24-48 (405)
56 cd03132 GATase1_catalase Type 41.6 80 0.0017 25.3 5.7 36 68-106 5-40 (142)
57 PRK07856 short chain dehydroge 41.3 1.3E+02 0.0027 26.1 7.3 37 64-105 4-41 (252)
58 cd01482 vWA_collagen_alphaI-XI 41.2 47 0.001 27.4 4.4 34 65-101 104-137 (164)
59 PF00381 PTS-HPr: PTS HPr comp 39.3 47 0.001 24.9 3.7 33 67-100 4-36 (84)
60 COG2065 PyrR Pyrimidine operon 39.1 21 0.00045 31.7 2.0 22 171-192 103-126 (179)
61 PF01936 NYN: NYN domain; Int 37.8 31 0.00067 27.4 2.7 29 68-102 99-127 (146)
62 PF04007 DUF354: Protein of un 37.3 25 0.00055 33.7 2.4 19 176-196 256-274 (335)
63 cd04962 GT1_like_5 This family 36.9 65 0.0014 29.0 4.9 35 69-104 5-39 (371)
64 cd01475 vWA_Matrilin VWA_Matri 36.7 52 0.0011 28.8 4.2 34 65-101 109-142 (224)
65 smart00775 LNS2 LNS2 domain. T 36.5 41 0.00089 28.4 3.3 18 76-93 26-43 (157)
66 PF08323 Glyco_transf_5: Starc 36.2 37 0.00081 30.5 3.2 22 82-104 22-43 (245)
67 smart00368 LRR_RI Leucine rich 35.9 38 0.00082 20.5 2.3 26 65-90 2-27 (28)
68 cd03794 GT1_wbuB_like This fam 35.7 67 0.0015 27.9 4.7 28 79-107 17-44 (394)
69 PRK15415 propanediol utilizati 35.6 49 0.0011 31.1 3.9 56 133-189 185-243 (266)
70 PRK11249 katE hydroperoxidase 34.9 1.3E+02 0.0027 32.4 7.2 39 65-104 596-634 (752)
71 cd03808 GT1_cap1E_like This fa 34.7 42 0.00092 28.8 3.2 37 70-107 4-40 (359)
72 PF02595 Gly_kinase: Glycerate 34.0 64 0.0014 31.7 4.6 61 133-198 265-325 (377)
73 PRK12767 carbamoyl phosphate s 34.0 61 0.0013 29.6 4.3 34 67-105 2-36 (326)
74 PRK14099 glycogen synthase; Pr 33.8 1E+02 0.0022 30.6 6.2 22 82-104 26-47 (485)
75 PRK06843 inosine 5-monophospha 33.0 98 0.0021 30.7 5.8 103 81-196 153-263 (404)
76 PF13528 Glyco_trans_1_3: Glyc 33.0 48 0.001 29.8 3.4 33 153-199 92-124 (318)
77 cd03796 GT1_PIG-A_like This fa 32.9 64 0.0014 30.2 4.3 26 78-104 16-41 (398)
78 cd01476 VWA_integrin_invertebr 32.4 73 0.0016 25.8 4.1 34 66-102 105-139 (163)
79 PLN00414 glycosyltransferase f 32.4 1.4E+02 0.0029 29.7 6.7 26 82-108 21-46 (446)
80 PF07355 GRDB: Glycine/sarcosi 32.4 44 0.00095 32.6 3.2 55 136-195 63-117 (349)
81 PF01205 UPF0029: Uncharacteri 32.2 58 0.0013 26.5 3.4 32 69-101 50-83 (110)
82 KOG2749 mRNA cleavage and poly 31.9 1E+02 0.0022 30.7 5.5 59 9-102 188-247 (415)
83 TIGR01133 murG undecaprenyldip 30.2 59 0.0013 29.3 3.5 22 175-197 257-278 (348)
84 PRK06171 sorbitol-6-phosphate 29.7 3.6E+02 0.0079 23.3 8.4 75 65-161 8-83 (266)
85 TIGR02095 glgA glycogen/starch 29.6 56 0.0012 31.7 3.5 24 82-106 23-46 (473)
86 PRK12342 hypothetical protein; 29.3 1.3E+02 0.0028 27.9 5.6 54 136-197 91-144 (254)
87 PHA03392 egt ecdysteroid UDP-g 29.1 50 0.0011 33.2 3.1 37 68-105 22-60 (507)
88 PRK06714 S-adenosylhomocystein 29.0 2.3E+02 0.005 25.5 7.1 50 179-228 175-229 (236)
89 PRK05784 phosphoribosylamine-- 28.7 5.2E+02 0.011 26.0 10.2 32 67-105 1-35 (486)
90 PRK03359 putative electron tra 28.7 1.3E+02 0.0029 27.8 5.6 55 136-198 94-148 (256)
91 PRK00025 lpxB lipid-A-disaccha 28.2 65 0.0014 29.7 3.5 18 176-195 269-286 (380)
92 PRK11568 hypothetical protein; 28.1 74 0.0016 28.6 3.7 28 72-100 69-98 (204)
93 TIGR03590 PseG pseudaminic aci 28.0 77 0.0017 28.9 3.9 29 155-198 241-269 (279)
94 PF10841 DUF2644: Protein of u 27.3 24 0.00051 26.2 0.3 24 70-93 3-27 (60)
95 COG0300 DltE Short-chain dehyd 26.9 81 0.0018 29.5 3.8 37 64-105 4-41 (265)
96 cd03148 GATase1_EcHsp31_like T 26.8 1E+02 0.0022 27.8 4.4 30 75-105 21-50 (232)
97 PRK06398 aldose dehydrogenase; 26.1 4.4E+02 0.0096 23.0 8.4 73 65-161 5-78 (258)
98 COG1929 Glycerate kinase [Carb 25.9 3.4E+02 0.0074 26.9 7.9 43 154-198 283-325 (378)
99 TIGR01382 PfpI intracellular p 25.8 97 0.0021 25.3 3.8 31 74-105 7-37 (166)
100 TIGR00257 IMPACT_YIGZ uncharac 25.2 90 0.002 28.0 3.7 28 72-100 69-98 (204)
101 TIGR01303 IMP_DH_rel_1 IMP deh 24.8 1.8E+02 0.0038 29.4 6.0 102 81-195 225-334 (475)
102 TIGR00182 plsX fatty acid/phos 24.6 6.2E+02 0.014 24.2 10.3 73 82-162 10-90 (322)
103 COG1926 Predicted phosphoribos 24.6 1.2E+02 0.0025 28.0 4.3 67 68-148 126-193 (220)
104 cd03801 GT1_YqgM_like This fam 24.4 1.1E+02 0.0025 26.0 4.1 28 80-108 18-45 (374)
105 cd03134 GATase1_PfpI_like A ty 24.4 1.2E+02 0.0026 24.8 4.1 29 74-103 7-35 (165)
106 PF00201 UDPGT: UDP-glucoronos 24.3 29 0.00063 33.7 0.4 35 69-104 3-37 (500)
107 cd03823 GT1_ExpE7_like This fa 24.1 93 0.002 27.0 3.6 27 81-108 20-46 (359)
108 PF04230 PS_pyruv_trans: Polys 24.0 68 0.0015 27.0 2.6 22 177-198 264-285 (286)
109 PTZ00075 Adenosylhomocysteinas 24.0 1.9E+02 0.0041 29.4 6.0 67 80-160 56-129 (476)
110 PRK00726 murG undecaprenyldiph 23.7 92 0.002 28.5 3.6 22 175-197 259-280 (357)
111 PRK15005 universal stress prot 23.5 1.7E+02 0.0036 22.9 4.6 34 130-169 87-120 (144)
112 PF11977 RNase_Zc3h12a: Zc3h12 22.5 57 0.0012 27.4 1.8 32 73-105 18-49 (155)
113 PF06722 DUF1205: Protein of u 22.4 1.4E+02 0.003 23.6 3.8 47 64-111 38-91 (97)
114 PF00156 Pribosyltran: Phospho 22.3 99 0.0022 23.8 3.0 34 65-99 87-121 (125)
115 PRK08334 translation initiatio 22.2 1.2E+02 0.0026 29.7 4.1 43 154-196 237-279 (356)
116 PRK08525 amidophosphoribosyltr 22.1 1.3E+02 0.0028 29.9 4.5 36 66-102 340-376 (445)
117 TIGR02764 spore_ybaN_pdaB poly 22.1 1.2E+02 0.0026 25.6 3.8 30 65-94 4-33 (191)
118 PRK05584 5'-methylthioadenosin 22.0 3.5E+02 0.0077 23.5 6.8 48 178-225 175-227 (230)
119 COG1091 RfbD dTDP-4-dehydrorha 21.9 2.9E+02 0.0063 26.1 6.5 61 134-199 34-102 (281)
120 COG2204 AtoC Response regulato 21.8 4.2E+02 0.009 26.9 8.0 28 65-97 3-31 (464)
121 PRK07322 adenine phosphoribosy 21.6 1.7E+02 0.0037 25.1 4.6 31 65-97 119-150 (178)
122 PRK05653 fabG 3-ketoacyl-(acyl 21.2 1.6E+02 0.0034 24.8 4.3 36 64-103 3-38 (246)
123 PRK11574 oxidative-stress-resi 21.1 1.9E+02 0.0041 24.5 4.8 37 67-104 3-39 (196)
124 cd03135 GATase1_DJ-1 Type 1 gl 21.1 1.5E+02 0.0034 23.8 4.1 32 74-106 6-37 (163)
125 PTZ00441 sporozoite surface pr 20.6 1.3E+02 0.0028 31.4 4.2 34 66-102 151-186 (576)
126 PRK06182 short chain dehydroge 20.6 1.8E+02 0.0039 25.5 4.7 77 66-161 3-80 (273)
127 PRK06372 translation initiatio 20.5 1.4E+02 0.003 27.8 4.0 47 155-201 151-197 (253)
128 cd03818 GT1_ExpC_like This fam 20.4 1.1E+02 0.0024 28.5 3.5 25 81-106 12-36 (396)
129 PRK06179 short chain dehydroge 20.3 5.7E+02 0.012 22.1 8.1 74 67-161 5-79 (270)
130 PRK01911 ppnK inorganic polyph 20.3 2.8E+02 0.0061 26.0 6.1 33 155-198 64-97 (292)
131 PRK07178 pyruvate carboxylase 20.2 8.4E+02 0.018 24.0 9.8 37 68-109 4-40 (472)
132 PRK09922 UDP-D-galactose:(gluc 20.1 1.7E+02 0.0037 27.0 4.6 38 67-105 1-44 (359)
133 cd03811 GT1_WabH_like This fam 20.1 1.9E+02 0.0041 24.6 4.6 27 80-107 16-42 (353)
No 1
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=100.00 E-value=4.2e-65 Score=447.57 Aligned_cols=188 Identities=41% Similarity=0.635 Sum_probs=154.2
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCeEEEEeeCCCCcccccccCCCCceEEEEee----eCCceeEEecCChHHHH
Q 024878 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAE----INGATAYEVSGTPVDCV 142 (261)
Q Consensus 67 ~~ILlTNDDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~~qSg~g~siT~~~pl~v~~v~----~~g~~~y~V~GTPaDCV 142 (261)
|||||||||||+||||++|+++|++.| |+|+||||++||||+||++|+++|++++++. ..+.++|+|+|||+|||
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~L~~~g-~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~~~v~GTPaDcv 79 (196)
T PF01975_consen 1 MRILLTNDDGIDAPGIRALAKALSALG-HDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPGHDPGGVEAYAVSGTPADCV 79 (196)
T ss_dssp SEEEEE-SS-TTSHHHHHHHHHHTTTS-SEEEEEEESSSTTTSTTS--SSSEEEEEEEE-TTCCSTTEEEEESS-HHHHH
T ss_pred CeEEEEcCCCCCCHHHHHHHHHHHhcC-CeEEEEeCCCCCcCcceeecCCCCeEEEEEEecccCCCCCEEEEcCcHHHHH
Confidence 899999999999999999999998887 8999999999999999999999999998875 35678999999999999
Q ss_pred HHHHhcccCCCCCCcEEEecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEEeecccCCCCCCccHHHHHHHHHHHHHH
Q 024878 143 SLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINA 222 (261)
Q Consensus 143 ~laL~~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAvS~~~~~~~~~~~d~~~aa~~~~~li~~ 222 (261)
++||+++++ +.+|||||||||+|.|+|.+++||||||||+||+++||||||||++.... ....+|+.+++++.+++++
T Consensus 80 ~~al~~~~~-~~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~~~~-~~~~~~~~aa~~~~~~i~~ 157 (196)
T PF01975_consen 80 KLALDGLLP-DKKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDSDSE-SKDPDFETAARFAVKLIEK 157 (196)
T ss_dssp HHHHHCTST-TSS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEESSST--SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhc-cCCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEeccccCC-CcHHHHHHHHHHHHHHHHH
Confidence 999998764 45699999999999999999999999999999999999999999987532 2334799999998888887
Q ss_pred HHHHhhcCCCCCCcEEEecCCCCCC-CCCCeeEeeeeecC
Q 024878 223 ATRDIGKGIFPRSCLLNVEIPTSPL-TNKVCPSKVVCEEY 261 (261)
Q Consensus 223 l~~~~~~~~lp~~~~LNVN~P~~~~-~~kg~k~t~~~~~~ 261 (261)
+. +..+|++++||||||..+. +.+|+|+|+++|.+
T Consensus 158 ~~----~~~~~~~~~lNVN~P~~~~~~~~g~~~t~~g~~~ 193 (196)
T PF01975_consen 158 LL----KNPLPPGVVLNVNFPSVPCEEIKGIKVTRLGRRR 193 (196)
T ss_dssp HH----HSGSSTTSEEEEEEESS-GGG-SEEEE-B--CCS
T ss_pred Hh----hcCCCCCcEEEEEcCCCCcccCCCEEEEECCcce
Confidence 65 4567999999999999874 68999999999864
No 2
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=2.4e-63 Score=452.44 Aligned_cols=184 Identities=36% Similarity=0.509 Sum_probs=165.2
Q ss_pred CCCCeEEEecCCCCCCccHHHHHHHHHhcCCCeEEEEeeCCCCcccccccCCCCceEEEEeeeC-CceeEEecCChHHHH
Q 024878 64 SSKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEIN-GATAYEVSGTPVDCV 142 (261)
Q Consensus 64 ~~~~~ILlTNDDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~~qSg~g~siT~~~pl~v~~v~~~-g~~~y~V~GTPaDCV 142 (261)
.+||||||||||||+||||++|+++|++.| +|+||||++||||+||+||+++||++++++.. +..+|+|+|||+|||
T Consensus 3 ~~~M~ILltNDDGi~a~Gi~aL~~~l~~~g--~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDCV 80 (257)
T PRK13932 3 DKKPHILVCNDDGIEGEGIHVLAASMKKIG--RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFFGYTVSGTPVDCI 80 (257)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHhCC--CEEEEcCCCCCCCCcccccCCCCeEEEEEccCCCceEEEEcCcHHHHH
Confidence 457999999999999999999999999887 89999999999999999999999999998744 556799999999999
Q ss_pred HHHHhcccCCCCCCcEEEecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEEeecccCCCCCCccHHHHHHHHHHHHHH
Q 024878 143 SLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINA 222 (261)
Q Consensus 143 ~laL~~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAvS~~~~~~~~~~~d~~~aa~~~~~li~~ 222 (261)
++||++++. .+|||||||||+|.|+|.+++||||||||+||+++||||||||+.+.. ..+|+.+++++.+|+++
T Consensus 81 ~lal~~~~~--~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~~~~~----~~~~~~aa~~~~~l~~~ 154 (257)
T PRK13932 81 KVALSHILP--EKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSLTTYE----NADFTYAGKFARKLARK 154 (257)
T ss_pred HHHHHhhcC--CCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEcccCC----cCCHHHHHHHHHHHHHH
Confidence 999998653 579999999999999999999999999999999999999999996421 23799999998888876
Q ss_pred HHHHhhcCCCCCCcEEEecCCCCCC-CCCCeeEeeeee
Q 024878 223 ATRDIGKGIFPRSCLLNVEIPTSPL-TNKVCPSKVVCE 259 (261)
Q Consensus 223 l~~~~~~~~lp~~~~LNVN~P~~~~-~~kg~k~t~~~~ 259 (261)
++ +..+|++++||||||.++. ++||+|+|+..+
T Consensus 155 l~----~~~~p~~~~LNVN~P~~~~~~~~gik~t~~g~ 188 (257)
T PRK13932 155 VL----REGLPPDTILSVNIPNVPESDIQGVLITRQGR 188 (257)
T ss_pred HH----hcCCCCCcEEEEEeCCCCccccCCEEEeeCCC
Confidence 64 4568999999999999874 689999999875
No 3
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=1e-62 Score=449.29 Aligned_cols=189 Identities=26% Similarity=0.390 Sum_probs=161.0
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcC--CCeEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHHH
Q 024878 67 PVLLVTNGDGIESPGLVYLVEALVREG--LYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSL 144 (261)
Q Consensus 67 ~~ILlTNDDGi~SpGi~aL~~aL~~~G--~~~V~VvAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~y~V~GTPaDCV~l 144 (261)
|||||||||||+||||++|+++|++.. .++|+||||++||||+||+||+++||++++++ ...|+|+|||||||++
T Consensus 1 M~ILlTNDDGI~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~pl~~~~~~---~~~yav~GTPaDCV~l 77 (261)
T PRK13931 1 MRILITNDDGINAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAELG---PRRFAAEGSPADCVLA 77 (261)
T ss_pred CeEEEEcCCCCCCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCCCeEEEEeC---CCeEEEcCchHHHHHH
Confidence 789999999999999999999998851 14999999999999999999999999999875 2469999999999999
Q ss_pred HHhcccCCCCCCcEEEecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEEeecccC-CCCCCccHHHHHHHHHHHHHHH
Q 024878 145 ALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKK-DESQESDFKDAVSVCLPLINAA 223 (261)
Q Consensus 145 aL~~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAvS~~~~~-~~~~~~d~~~aa~~~~~li~~l 223 (261)
||.+++ ++.+|||||||||+|.|+|.+++||||||||+||+++||||||||+.+.. ......+|+.+++++.+|++++
T Consensus 78 al~~~~-~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~~~~~~~~~~~~~~~~a~~~~~~l~~~~ 156 (261)
T PRK13931 78 ALYDVM-KDAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQYYGPRNEGLDDPFEAARTHGARVVRKL 156 (261)
T ss_pred HHHHhc-CCCCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEeeccCCCccccccHHHHHHHHHHHHHHH
Confidence 999865 33689999999999999999999999999999999999999999996532 1111236999999999999887
Q ss_pred HHHhhcCCCCCCcEEEecCCCCCC-CCCCeeEeeeee
Q 024878 224 TRDIGKGIFPRSCLLNVEIPTSPL-TNKVCPSKVVCE 259 (261)
Q Consensus 224 ~~~~~~~~lp~~~~LNVN~P~~~~-~~kg~k~t~~~~ 259 (261)
++.......|++++||||||.++. ++||+|+|+..+
T Consensus 157 l~~~~~~~~~~~~~lNVN~P~~~~~~~~gik~t~~g~ 193 (261)
T PRK13931 157 LEAGPWDDEDYRLFYNVNFPPVPAADVKGIRVAAQGF 193 (261)
T ss_pred HhccCCCCCCCCeEEEEEeCcCCcccCCceEEeECCc
Confidence 654222223445899999999874 589999999765
No 4
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=1.1e-62 Score=447.22 Aligned_cols=183 Identities=34% Similarity=0.516 Sum_probs=163.6
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCeEEEEeeCCCCcccccccCCCCceEEEEeeeC--CceeEEecCChHHHHHH
Q 024878 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEIN--GATAYEVSGTPVDCVSL 144 (261)
Q Consensus 67 ~~ILlTNDDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~~qSg~g~siT~~~pl~v~~v~~~--g~~~y~V~GTPaDCV~l 144 (261)
|||||||||||+||||++|+++|++. |+|+||||++||||+||++|+++||++++++.. +.++|+|+|||||||++
T Consensus 1 M~ILvtNDDGi~apGl~aL~~~l~~~--~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~v~GTPaDcV~l 78 (253)
T PRK13933 1 MNILLTNDDGINAEGINTLAELLSKY--HEVIIVAPENQRSASSHSITIYEPIIIKEVKLEGINSKAYSISGTPADCVRV 78 (253)
T ss_pred CeEEEEcCCCCCChhHHHHHHHHHhC--CcEEEEccCCCCccccccccCCCCeEEEeeccCCCCccEEEECCcHHHHHHH
Confidence 78999999999999999999999874 599999999999999999999999999998744 34689999999999999
Q ss_pred HHhcccCCCCCCcEEEecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEEeecccCCCCCCccHHHHHHHHHHHHHHHH
Q 024878 145 ALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAAT 224 (261)
Q Consensus 145 aL~~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAvS~~~~~~~~~~~d~~~aa~~~~~li~~l~ 224 (261)
||++++ +.+|||||||||+|.|+|.+++||||||||+||+++||||||||+..... .+.+|+.+++++.++++++.
T Consensus 79 al~~l~--~~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~~~~~~--~~~~~~~a~~~~~~lv~~l~ 154 (253)
T PRK13933 79 ALDKLV--PDNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSADVKKG--KDENYKIAAKYALEVLNILK 154 (253)
T ss_pred HHHHhc--CCCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEeccCCC--CcccHHHHHHHHHHHHHHHH
Confidence 999865 35899999999999999999999999999999999999999999964321 12379999999998888764
Q ss_pred HHhhcCCCCCCcEEEecCCCCCC-CCCCeeEeeeee
Q 024878 225 RDIGKGIFPRSCLLNVEIPTSPL-TNKVCPSKVVCE 259 (261)
Q Consensus 225 ~~~~~~~lp~~~~LNVN~P~~~~-~~kg~k~t~~~~ 259 (261)
++.+|++++||||||.++. +++|+|+|+.++
T Consensus 155 ----~~~~p~~~~lNvNiP~~~~~~~~g~k~t~~g~ 186 (253)
T PRK13933 155 ----KEDLKNDVVLNLNVPFCSEEEIKGIKVCKVGN 186 (253)
T ss_pred ----hcCCCCCcEEEEecCCCchhhcCCeEEEeCCc
Confidence 4578999999999999874 689999999986
No 5
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=100.00 E-value=1.1e-62 Score=445.02 Aligned_cols=185 Identities=41% Similarity=0.570 Sum_probs=164.6
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCeEEEEeeCCCCcccccccCCCCceEEEEeee-CCceeEEecCChHHHHHHH
Q 024878 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEI-NGATAYEVSGTPVDCVSLA 145 (261)
Q Consensus 67 ~~ILlTNDDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~~qSg~g~siT~~~pl~v~~v~~-~g~~~y~V~GTPaDCV~la 145 (261)
|||||||||||+||||++|+++|++.| +|+||||++||||+||++|+++||++++++. ++.++|+|+|||||||++|
T Consensus 1 M~ILltNDDGi~a~Gi~aL~~~l~~~g--~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~~~v~GTPaDcv~~g 78 (244)
T TIGR00087 1 MKILLTNDDGIHSPGIRALYQALKELG--EVTVVAPARQRSGTGHSLTLFEPLRVGQVKVKNGAHIYAVDGTPTDCVILG 78 (244)
T ss_pred CeEEEECCCCCCCHhHHHHHHHHHhCC--CEEEEeCCCCccccccCcCCCCCeEEEEeccCCCccEEEEcCcHHHHHHHH
Confidence 799999999999999999999999987 8999999999999999999999999999874 3557899999999999999
Q ss_pred HhcccCCCCCCcEEEecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEEeecccCCC--CCCccHHHHHHHHHHHHHHH
Q 024878 146 LSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDE--SQESDFKDAVSVCLPLINAA 223 (261)
Q Consensus 146 L~~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAvS~~~~~~~--~~~~d~~~aa~~~~~li~~l 223 (261)
|++++. ++|||||||||+|.|+|.+++||||||||+||+++||||||||+.+.... ....+|+.+++++.+|++++
T Consensus 79 l~~l~~--~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~~~~~~~~~~~~~~~~~aa~~~~~li~~l 156 (244)
T TIGR00087 79 INELMP--EVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISLQIFNGYKNSSPLDFDIAAKVTNAIVKNL 156 (244)
T ss_pred HHHhcc--CCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEecccCcccccccccHHHHHHHHHHHHHHH
Confidence 998653 57999999999999999999999999999999999999999999643211 11346999999998888876
Q ss_pred HHHhhcCCCCCCcEEEecCCCCCC-CCCCeeEeeeee
Q 024878 224 TRDIGKGIFPRSCLLNVEIPTSPL-TNKVCPSKVVCE 259 (261)
Q Consensus 224 ~~~~~~~~lp~~~~LNVN~P~~~~-~~kg~k~t~~~~ 259 (261)
+ +..+|++++||||||.++. +++|+|+|+.++
T Consensus 157 ~----~~~~p~~~~lNVN~P~~~~~~~~g~~~t~~~~ 189 (244)
T TIGR00087 157 L----KNGLPGGDLLNVNVPLVPSIQNTGIRITRLGR 189 (244)
T ss_pred H----hcCCCCCcEEEEEeCCCCcccCCCEEEEECCc
Confidence 5 4568999999999999875 689999999875
No 6
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=1.7e-62 Score=446.00 Aligned_cols=181 Identities=36% Similarity=0.550 Sum_probs=162.3
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCeEEEEeeCCCCcccccccCCCCceEEEEeee-CCceeEEecCChHHHHHHH
Q 024878 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEI-NGATAYEVSGTPVDCVSLA 145 (261)
Q Consensus 67 ~~ILlTNDDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~~qSg~g~siT~~~pl~v~~v~~-~g~~~y~V~GTPaDCV~la 145 (261)
|||||||||||+||||++|+++|++. |+|+||||++||||+||+||+++|+++++++. .+..+|+|+|||+|||++|
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~l~~~--~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDcV~la 78 (253)
T PRK13935 1 MNILVTNDDGITSPGIIILAEYLSEK--HEVFVVAPDKERSATGHAITIRVPLWAKKVFISERFVAYATTGTPADCVKLG 78 (253)
T ss_pred CeEEEECCCCCCCHHHHHHHHHHHhC--CcEEEEccCCCCccccccccCCCCceEEEeecCCCccEEEECCcHHHHHHHH
Confidence 78999999999999999999999864 59999999999999999999999999999874 3567899999999999999
Q ss_pred HhcccCCCCCCcEEEecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEEeecccCCCCCCccHHHHHHHHHHHHHHHHH
Q 024878 146 LSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATR 225 (261)
Q Consensus 146 L~~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAvS~~~~~~~~~~~d~~~aa~~~~~li~~l~~ 225 (261)
|++++ +.+|||||||||+|.|+|.+++||||||||+||+++||||||||+... ...+|+.+++++.+|++++.
T Consensus 79 l~~~~--~~~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~~~----~~~~~~~aa~~~~~l~~~l~- 151 (253)
T PRK13935 79 YDVIM--DKKVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISSADF----ENPDYETAARFLLNFLEEFD- 151 (253)
T ss_pred HHhhc--cCCCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEcccC----CccCHHHHHHHHHHHHHHHH-
Confidence 99865 358999999999999999999999999999999999999999998421 12379999999888887664
Q ss_pred HhhcCCCCCCcEEEecCCCCCC-CCCCeeEeeeee
Q 024878 226 DIGKGIFPRSCLLNVEIPTSPL-TNKVCPSKVVCE 259 (261)
Q Consensus 226 ~~~~~~lp~~~~LNVN~P~~~~-~~kg~k~t~~~~ 259 (261)
+..+|++++||||||.++. +++|+|+|+..+
T Consensus 152 ---~~~~p~~~~LNVN~P~~~~~~~~gik~tr~g~ 183 (253)
T PRK13935 152 ---FSLLPPFTALNINVPSVPYGEIKGWKLTRQSR 183 (253)
T ss_pred ---hcCCCCCcEEEEEeCcCChhhcCCeEEeeCCC
Confidence 5678999999999999874 689999999875
No 7
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=100.00 E-value=1.1e-62 Score=446.14 Aligned_cols=183 Identities=41% Similarity=0.634 Sum_probs=164.2
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCeEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHHHHH
Q 024878 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLAL 146 (261)
Q Consensus 67 ~~ILlTNDDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~y~V~GTPaDCV~laL 146 (261)
|||||||||||+||||++|+++|+ .+ +||+||||+.||||+||++|+++||++++++. ..|+|+|||+|||.+||
T Consensus 1 mrILlTNDDGi~a~Gi~aL~~al~-~~-~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~~---~~~av~GTPaDCV~lal 75 (252)
T COG0496 1 MRILLTNDDGIHAPGIRALARALR-EG-ADVTVVAPDREQSGASHSLTLHEPLRVRQVDN---GAYAVNGTPADCVILGL 75 (252)
T ss_pred CeEEEecCCccCCHHHHHHHHHHh-hC-CCEEEEccCCCCcccccccccccCceeeEecc---ceEEecCChHHHHHHHH
Confidence 799999999999999999999999 44 69999999999999999999999999999863 68999999999999999
Q ss_pred hcccCCCCCCcEEEecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEEeecccCC-CCCCccHHHHHHHHHHHHHHHHH
Q 024878 147 SGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKD-ESQESDFKDAVSVCLPLINAATR 225 (261)
Q Consensus 147 ~~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAvS~~~~~~-~~~~~d~~~aa~~~~~li~~l~~ 225 (261)
+.++ +..+|||||||||.|.|+|.+++|||||||||||+++||||||+|+..... .....+|+.|++++..|+++++
T Consensus 76 ~~l~-~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~~~~~~~~~~~~~e~A~~~~~~lv~~l~- 153 (252)
T COG0496 76 NELL-KEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLAYREAFGKQDVDFETAAKVARALVEALL- 153 (252)
T ss_pred HHhc-cCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeehhccccccccccHHHHHHHHHHHHHHHH-
Confidence 9865 334699999999999999999999999999999999999999999986532 1223589999999888888776
Q ss_pred HhhcCCCCCCcEEEecCCCCCC-CCCCeeEeeeee
Q 024878 226 DIGKGIFPRSCLLNVEIPTSPL-TNKVCPSKVVCE 259 (261)
Q Consensus 226 ~~~~~~lp~~~~LNVN~P~~~~-~~kg~k~t~~~~ 259 (261)
+..+|...+||||||.++. +++|+|+|+.||
T Consensus 154 ---~~p~~~~~llNVNiP~~~~~~~~gi~vtr~g~ 185 (252)
T COG0496 154 ---ANPLPPDTLLNVNIPNLPLEEIKGIRVTRLGR 185 (252)
T ss_pred ---hCCCCCCcEEEEeCCCCCccccCcEEEEechh
Confidence 4578999999999999875 699999999994
No 8
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=100.00 E-value=2.8e-62 Score=444.03 Aligned_cols=183 Identities=38% Similarity=0.573 Sum_probs=162.3
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCeEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHHHHH
Q 024878 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLAL 146 (261)
Q Consensus 67 ~~ILlTNDDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~y~V~GTPaDCV~laL 146 (261)
|||||||||||+||||++|+++|++. |+|+||||++||||+||+||+++|+++++++ ..+|+|+|||+|||++||
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~l~~~--~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~---~~~~~v~GTPaDcV~~gl 75 (250)
T PRK00346 1 MRILLTNDDGIHAPGIRALAEALREL--ADVTVVAPDRERSGASHSLTLTRPLRVEKVD---NGFYAVDGTPTDCVHLAL 75 (250)
T ss_pred CeEEEECCCCCCChhHHHHHHHHHhC--CCEEEEeCCCCCcCCcccccCCCCeEEEEec---CCeEEECCcHHHHHHHHH
Confidence 78999999999999999999999987 4999999999999999999999999999975 247999999999999999
Q ss_pred hcccCCCCCCcEEEecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEEeecccCCCCCCccHHHHHHHHHHHHHHHHHH
Q 024878 147 SGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRD 226 (261)
Q Consensus 147 ~~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAvS~~~~~~~~~~~d~~~aa~~~~~li~~l~~~ 226 (261)
++++. ++|||||||||+|.|+|.+++||||||||+||+++||||||||+.+........+|+.+++++.+|++++++
T Consensus 76 ~~l~~--~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~~~~~~~~~~~~~~a~~~~~~li~~l~~- 152 (250)
T PRK00346 76 NGLLD--PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSLAVSEGSRGWRDFETAAKVARELVRKLLE- 152 (250)
T ss_pred Hhhcc--CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEecccccccCchhhHHHHHHHHHHHHHHHHh-
Confidence 98653 589999999999999999999999999999999999999999996521111223799999999998887763
Q ss_pred hhcCCCCCCcEEEecCCCCCC-CCCCeeEeeeeec
Q 024878 227 IGKGIFPRSCLLNVEIPTSPL-TNKVCPSKVVCEE 260 (261)
Q Consensus 227 ~~~~~lp~~~~LNVN~P~~~~-~~kg~k~t~~~~~ 260 (261)
..+|++++||||||.++. +++|+|+|+.++.
T Consensus 153 ---~~~p~~~~lNvN~P~~~~~~~~g~~~t~~g~~ 184 (250)
T PRK00346 153 ---KPLPPGTLLNVNVPDLPPEEIKGIRVTRLGKR 184 (250)
T ss_pred ---cCCCCCcEEEEEeCCCCcccCCCEEEEeCCCc
Confidence 458999999999999874 6899999998763
No 9
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=3.1e-61 Score=440.27 Aligned_cols=182 Identities=29% Similarity=0.398 Sum_probs=159.0
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCeEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHHHHH
Q 024878 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLAL 146 (261)
Q Consensus 67 ~~ILlTNDDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~y~V~GTPaDCV~laL 146 (261)
|||||||||||+||||++|+++|++.| +|+||||++||||+||++|+++||++++++..+.++|+|+|||+|||++||
T Consensus 1 M~ILlTNDDGi~apGi~aL~~al~~~g--~V~VvAP~~eqSg~g~aiT~~~pl~~~~~~~~~~~~y~v~GTPaDCV~lal 78 (266)
T PRK13934 1 MKILVTNDDGVHSPGLRLLYEFVSPLG--EVDVVAPETPKSATGLGITLHKPLRMYEVDLCGFKVYATSGTPSDTIYLAT 78 (266)
T ss_pred CeEEEEcCCCCCCHHHHHHHHHHHhCC--cEEEEccCCCCccccccccCCCCcEEEEeccCCcceEEeCCCHHHHHHHHH
Confidence 789999999999999999999999876 899999999999999999999999999987556788999999999999999
Q ss_pred hcccCCCCCCcEEEecCCCCCCCCCc-ccccchHHHHHHHHHcCCCeeEEeecccCCCC---CCccHHHHHHHHHHHHHH
Q 024878 147 SGALFSWSKPLLVISGINRGSSCGHH-MFYSGVVAGAREALICGVPSLSISLNWKKDES---QESDFKDAVSVCLPLINA 222 (261)
Q Consensus 147 ~~~l~~~~~PDLVISGIN~G~N~G~~-v~ySGTVgAA~EA~~~GIPAIAvS~~~~~~~~---~~~d~~~aa~~~~~li~~ 222 (261)
.++ +.+|||||||||+|.|+|.+ ++||||||||+||+++||||||||+.+..... ...+|+.+++++.+++++
T Consensus 79 ~~l---~~~pDLViSGIN~G~NlG~d~v~ySGTVgAA~Ea~~~GIPsIAvS~~~~~~~~~~~~~~~~~~a~~~~~~lv~~ 155 (266)
T PRK13934 79 YGL---GRKYDLVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPAVAYSAYVDDWEELLEDGEALEIMKAVVRATAEY 155 (266)
T ss_pred Hhc---cCCCCeEEecCccCCCCCcCcccccHhHHHHHHHHhcCCCEEEEecccCCcccccccchhHHHHHHHHHHHHHH
Confidence 874 36899999999999999999 89999999999999999999999996432110 112488888877766665
Q ss_pred HHHHhhcCCCCCCc-EEEecCCCCCCCCCCe--eEeeeee
Q 024878 223 ATRDIGKGIFPRSC-LLNVEIPTSPLTNKVC--PSKVVCE 259 (261)
Q Consensus 223 l~~~~~~~~lp~~~-~LNVN~P~~~~~~kg~--k~t~~~~ 259 (261)
+ .+..+|+++ +||||||.++. +|+ |+|+.++
T Consensus 156 l----~~~~~p~~~~~LNVN~P~~~~--~gi~~~~tr~g~ 189 (266)
T PRK13934 156 V----LKRGMPKGVDVISVNFPRRLR--RGVKAKLVKAAK 189 (266)
T ss_pred H----HhcCCCCCCcEEEEecCCCCC--CCCceEEecCCc
Confidence 5 456789996 99999999875 888 9999875
No 10
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=91.89 E-value=0.94 Score=42.38 Aligned_cols=38 Identities=29% Similarity=0.236 Sum_probs=27.9
Q ss_pred CeEEEecCCCC-CCccHHHHHHHHHhcCCCeEEEEeeCCC
Q 024878 67 PVLLVTNGDGI-ESPGLVYLVEALVREGLYNVHVCAPQSD 105 (261)
Q Consensus 67 ~~ILlTNDDGi-~SpGi~aL~~aL~~~G~~~V~VvAP~~~ 105 (261)
||||++.=-+. +---+.+|+++|++.| |+|+++++..-
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rG-h~V~~~t~~~~ 39 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAG-HEVRVATPPEF 39 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCC-CeEEEeeCHhH
Confidence 67777643222 2233679999999999 99999999863
No 11
>PLN02846 digalactosyldiacylglycerol synthase
Probab=90.15 E-value=1.9 Score=43.07 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=31.0
Q ss_pred CCCCeEEEecCC------CCCCccHHHHHHHHHhcCCCeEEEEeeCCC
Q 024878 64 SSKPVLLVTNGD------GIESPGLVYLVEALVREGLYNVHVCAPQSD 105 (261)
Q Consensus 64 ~~~~~ILlTNDD------Gi~SpGi~aL~~aL~~~G~~~V~VvAP~~~ 105 (261)
.++|||+|.-|= |. +-.+..+++.|.+.|.|+|+||||...
T Consensus 2 ~~~mrIaivTdt~lP~vnGv-a~s~~~~a~~L~~~G~heV~vvaP~~~ 48 (462)
T PLN02846 2 QKKQHIAIFTTASLPWMTGT-AVNPLFRAAYLAKDGDREVTLVIPWLS 48 (462)
T ss_pred CCCCEEEEEEcCCCCCCCCe-eccHHHHHHHHHhcCCcEEEEEecCCc
Confidence 356999988773 44 235666777999999669999999764
No 12
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=88.99 E-value=1 Score=43.15 Aligned_cols=102 Identities=17% Similarity=0.139 Sum_probs=61.9
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCeEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEe---cCChHHHHH
Q 024878 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEV---SGTPVDCVS 143 (261)
Q Consensus 67 ~~ILlTNDDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~y~V---~GTPaDCV~ 143 (261)
|+|++.=..=-+..-.+.+.+.|.+.| |+|+|.|-+.++ ...+-+ . .|.+...+ .+|+.+=+.
T Consensus 1 MkIwiDi~~p~hvhfFk~~I~eL~~~G-heV~it~R~~~~-----~~~LL~---~-----yg~~y~~iG~~g~~~~~Kl~ 66 (335)
T PF04007_consen 1 MKIWIDITHPAHVHFFKNIIRELEKRG-HEVLITARDKDE-----TEELLD---L-----YGIDYIVIGKHGDSLYGKLL 66 (335)
T ss_pred CeEEEECCCchHHHHHHHHHHHHHhCC-CEEEEEEeccch-----HHHHHH---H-----cCCCeEEEcCCCCCHHHHHH
Confidence 567766444445566788999999999 899999987532 111111 1 11111111 144444332
Q ss_pred HHHh------cccCCCCCCcEEEecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEEee
Q 024878 144 LALS------GALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISL 197 (261)
Q Consensus 144 laL~------~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAvS~ 197 (261)
..+. .+. +..+||++||+- -+.|++-|...|+|+|+|.=
T Consensus 67 ~~~~R~~~l~~~~-~~~~pDv~is~~--------------s~~a~~va~~lgiP~I~f~D 111 (335)
T PF04007_consen 67 ESIERQYKLLKLI-KKFKPDVAISFG--------------SPEAARVAFGLGIPSIVFND 111 (335)
T ss_pred HHHHHHHHHHHHH-HhhCCCEEEecC--------------cHHHHHHHHHhCCCeEEEec
Confidence 2222 112 235899999863 35889999999999999963
No 13
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=85.07 E-value=15 Score=32.24 Aligned_cols=29 Identities=34% Similarity=0.285 Sum_probs=24.0
Q ss_pred CCccHHHHHHHHHhcCCCeEEEEeeCCCCc
Q 024878 78 ESPGLVYLVEALVREGLYNVHVCAPQSDKS 107 (261)
Q Consensus 78 ~SpGi~aL~~aL~~~G~~~V~VvAP~~~qS 107 (261)
....+..|+++|.+.| |+|.++.+.....
T Consensus 16 ~~~~~~~l~~~L~~~g-~~v~~~~~~~~~~ 44 (364)
T cd03814 16 VVRTLQRLVEHLRARG-HEVLVIAPGPFRE 44 (364)
T ss_pred eehHHHHHHHHHHHCC-CEEEEEeCCchhh
Confidence 3357899999999999 8999999986543
No 14
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=84.92 E-value=3.2 Score=38.25 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=23.1
Q ss_pred CCCcEEEecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEEeec
Q 024878 154 SKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLN 198 (261)
Q Consensus 154 ~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAvS~~ 198 (261)
.+||||||-... .+.+.|...|||+|.+.-.
T Consensus 92 ~~pDlVi~d~~~--------------~~~~aA~~~~iP~i~i~~q 122 (321)
T TIGR00661 92 YNPDLIISDFEY--------------STVVAAKLLKIPVICISNQ 122 (321)
T ss_pred cCCCEEEECCch--------------HHHHHHHhcCCCEEEEecc
Confidence 589999987433 2256777899999999743
No 15
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=84.36 E-value=7.5 Score=35.70 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=29.4
Q ss_pred CeEEEe-cCCCCCCccHHHHHHHHHhcCCCeEEEEeeCC
Q 024878 67 PVLLVT-NGDGIESPGLVYLVEALVREGLYNVHVCAPQS 104 (261)
Q Consensus 67 ~~ILlT-NDDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~ 104 (261)
||||++ +--|-+--....|+++|++.| |+|+++....
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g-~ev~vv~~~~ 39 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRG-WEVLYLGTAR 39 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCC-CEEEEEECCC
Confidence 778877 656755556668999999999 8999998854
No 16
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=84.22 E-value=7.6 Score=35.15 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=25.0
Q ss_pred eEEEe-cCCCCCCccHHHHHHHHHhcCCCeEEEEeeCC
Q 024878 68 VLLVT-NGDGIESPGLVYLVEALVREGLYNVHVCAPQS 104 (261)
Q Consensus 68 ~ILlT-NDDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~ 104 (261)
+|+++ =..|-+......|+++|++.| |+|+|+++..
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g-~eV~vv~~~~ 38 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRG-VEVLWLGTKR 38 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCC-CEEEEEeCCC
Confidence 44444 444444444468999999999 8999998643
No 17
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=84.07 E-value=1.7 Score=40.81 Aligned_cols=108 Identities=25% Similarity=0.306 Sum_probs=58.6
Q ss_pred ccHHHHHHHHHhcCCCeEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHHHHHhcccCCCCCCcEE
Q 024878 80 PGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLV 159 (261)
Q Consensus 80 pGi~aL~~aL~~~G~~~V~VvAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~y~V~GTPaDCV~laL~~~l~~~~~PDLV 159 (261)
+|--+|+++|+..| .+|++|..+...+.....+...........+. . .+.+.|-+-...-....+ ...+||++
T Consensus 63 ~GA~aLa~aL~~lG-~~~~ivtd~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~-~~~~~d~l 135 (291)
T PF14336_consen 63 PGAAALARALQALG-KEVVIVTDERCAPVVKAAVRAAGLQGVDKVEI--P---PFFPDDFAQAFLEADGLL-KEPRPDLL 135 (291)
T ss_pred HHHHHHHHHHHHcC-CeEEEEECHHHHHHHHHHHHHHhhCccccccc--c---cccccchhhhHHHHhhcc-ccCCCCEE
Confidence 69999999999999 69999998887777766543211100000000 0 022333333333333322 33579999
Q ss_pred Ee----cCC--------CCCCCCCcc-cccchHHHHHHHHHcCCCeeEEee
Q 024878 160 IS----GIN--------RGSSCGHHM-FYSGVVAGAREALICGVPSLSISL 197 (261)
Q Consensus 160 IS----GIN--------~G~N~G~~v-~ySGTVgAA~EA~~~GIPAIAvS~ 197 (261)
|| |.| +|.|+...+ -...-+-.|++ .|||.|+|.=
T Consensus 136 IaIERpGra~dG~Y~nmrG~~I~~~~a~~D~lf~~a~~---~gi~tigIGD 183 (291)
T PF14336_consen 136 IAIERPGRAADGNYYNMRGEDISHLVAPLDDLFLAAKE---PGIPTIGIGD 183 (291)
T ss_pred EEeCCcccCCCCCEecCcCCcCccccccHHHHHHHhhc---CCCCEEEECC
Confidence 87 555 333333211 12222333333 7999998863
No 18
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=82.80 E-value=11 Score=34.20 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=24.9
Q ss_pred eEEEecCC-CCCCccHHHHHHHHHhcCCCeEEEEeeCC
Q 024878 68 VLLVTNGD-GIESPGLVYLVEALVREGLYNVHVCAPQS 104 (261)
Q Consensus 68 ~ILlTNDD-Gi~SpGi~aL~~aL~~~G~~~V~VvAP~~ 104 (261)
|||++.-. |=+--.+..|+++|.+.| |+|+|+++..
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G-~ev~v~~~~~ 37 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERG-AEVLFLGTKR 37 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCC-CEEEEEECCC
Confidence 46665322 222235568999999999 8999998854
No 19
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=81.85 E-value=2.7 Score=39.48 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCCCeEEEEeeCCCC
Q 024878 82 LVYLVEALVREGLYNVHVCAPQSDK 106 (261)
Q Consensus 82 i~aL~~aL~~~G~~~V~VvAP~~~q 106 (261)
+..|+++|++.| |+|+++.+....
T Consensus 12 ~l~lA~~L~~~G-h~V~~~~~~~~~ 35 (392)
T TIGR01426 12 TLGVVEELVARG-HRVTYATTEEFA 35 (392)
T ss_pred cHHHHHHHHhCC-CeEEEEeCHHHH
Confidence 467899999999 899999997754
No 20
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=81.25 E-value=3.1 Score=32.82 Aligned_cols=42 Identities=26% Similarity=0.346 Sum_probs=29.2
Q ss_pred EEEecCCCCCCcc----HHHHHHHHHhcCCCeEEEEeeCCCCccccc
Q 024878 69 LLVTNGDGIESPG----LVYLVEALVREGLYNVHVCAPQSDKSVSGH 111 (261)
Q Consensus 69 ILlTNDDGi~SpG----i~aL~~aL~~~G~~~V~VvAP~~~qSg~g~ 111 (261)
|||+|.-....-| +..|.++|.+.| |+|+|++|.....-...
T Consensus 1 ili~~~~~~~~GG~e~~~~~l~~~l~~~G-~~v~v~~~~~~~~~~~~ 46 (177)
T PF13439_consen 1 ILITNIFLPNIGGAERVVLNLARALAKRG-HEVTVVSPGVKDPIEEE 46 (177)
T ss_dssp -EEECC-TTSSSHHHHHHHHHHHHHHHTT--EEEEEESS-TTS-SST
T ss_pred CEEEEecCCCCChHHHHHHHHHHHHHHCC-CEEEEEEcCCCccchhh
Confidence 6888887777666 467889999999 89999998876554444
No 21
>PRK10307 putative glycosyl transferase; Provisional
Probab=75.46 E-value=4.9 Score=37.78 Aligned_cols=36 Identities=19% Similarity=0.043 Sum_probs=28.1
Q ss_pred CeEEEecCCCCCC-----ccHHHHHHHHHhcCCCeEEEEeeC
Q 024878 67 PVLLVTNGDGIES-----PGLVYLVEALVREGLYNVHVCAPQ 103 (261)
Q Consensus 67 ~~ILlTNDDGi~S-----pGi~aL~~aL~~~G~~~V~VvAP~ 103 (261)
||||+.++.-.-- .-+..|++.|.+.| |+|+|++|.
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G-~~V~vit~~ 41 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARG-HEVRVITAP 41 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCC-CeEEEEecC
Confidence 6788888753311 23789999999999 899999976
No 22
>PRK00654 glgA glycogen synthase; Provisional
Probab=74.36 E-value=33 Score=33.42 Aligned_cols=24 Identities=29% Similarity=0.247 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCCCeEEEEeeCCCC
Q 024878 82 LVYLVEALVREGLYNVHVCAPQSDK 106 (261)
Q Consensus 82 i~aL~~aL~~~G~~~V~VvAP~~~q 106 (261)
+..|.++|.+.| |+|.|+.|...+
T Consensus 23 v~~L~~~L~~~G-~~V~v~~p~y~~ 46 (466)
T PRK00654 23 VGALPKALAALG-HDVRVLLPGYPA 46 (466)
T ss_pred HHHHHHHHHHCC-CcEEEEecCCcc
Confidence 589999999999 899999998643
No 23
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=74.11 E-value=12 Score=36.29 Aligned_cols=41 Identities=12% Similarity=0.078 Sum_probs=30.2
Q ss_pred CCCCeEEEecC-CCCC-----CccHHHHHHHHHhcCCCeEEEEeeCCC
Q 024878 64 SSKPVLLVTNG-DGIE-----SPGLVYLVEALVREGLYNVHVCAPQSD 105 (261)
Q Consensus 64 ~~~~~ILlTND-DGi~-----SpGi~aL~~aL~~~G~~~V~VvAP~~~ 105 (261)
.++|||++.-+ ..+. ..-+..|.+.|++.| |+|+|+++...
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G-~eV~vlt~~~~ 102 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMG-DEVLVVTTDEG 102 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCC-CeEEEEecCCC
Confidence 67789987765 2221 124678889999999 89999998754
No 24
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=72.55 E-value=8.1 Score=34.15 Aligned_cols=39 Identities=23% Similarity=0.234 Sum_probs=29.8
Q ss_pred CeEEEecCCCCC----Cc-c----HHHHHHHHHhcCCCeEEEEeeCCCC
Q 024878 67 PVLLVTNGDGIE----SP-G----LVYLVEALVREGLYNVHVCAPQSDK 106 (261)
Q Consensus 67 ~~ILlTNDDGi~----Sp-G----i~aL~~aL~~~G~~~V~VvAP~~~q 106 (261)
|+||+..+.-+- .- | +..|.++|.+.| |+|+|+.|....
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g-~~V~v~~~~~~~ 48 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARG-HEVTLFASGDSK 48 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcC-ceEEEEecCCCC
Confidence 688888775321 11 2 789999999999 899999987754
No 25
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=70.99 E-value=11 Score=36.83 Aligned_cols=111 Identities=21% Similarity=0.286 Sum_probs=75.9
Q ss_pred EEEecCCCCCCccHHHHHHHHHhc-CCCeEEEEeeCCCCccccccc-CCCCceEEEEeeeCCceeEEecCC---hHHHHH
Q 024878 69 LLVTNGDGIESPGLVYLVEALVRE-GLYNVHVCAPQSDKSVSGHSV-TLRETIAVSSAEINGATAYEVSGT---PVDCVS 143 (261)
Q Consensus 69 ILlTNDDGi~SpGi~aL~~aL~~~-G~~~V~VvAP~~~qSg~g~si-T~~~pl~v~~v~~~g~~~y~V~GT---PaDCV~ 143 (261)
-||||-=|+.+.+ +..++.|.+. |..=+.+.+|+..--|...+- .+..-+ . ...|.++|..-|. |..-..
T Consensus 2 gLvtN~tgv~~~~-~~~~d~L~~~~~v~l~alF~PEHG~~G~~~ag~~v~~~~--D--~~tglpVySLYG~~~~Pt~~mL 76 (365)
T PF07075_consen 2 GLVTNQTGVDSDG-RHTIDVLAAAPGVNLVALFGPEHGFRGDAQAGEKVEDYI--D--PRTGLPVYSLYGKTRKPTPEML 76 (365)
T ss_pred EEEecccccCCCC-cCHHHHHhhCCCCCEEEEecCCCCCccchhcCCcCCCCc--C--CCCCCeEEECCCCCCCCCHHHH
Confidence 4899999999766 5566888887 555567889998777776542 211110 0 0135667777665 887766
Q ss_pred HHHhcccCCCCCCcEEEecCCCCCCCCC-cccccchHHHHHHHHH-cCCCeeEEee
Q 024878 144 LALSGALFSWSKPLLVISGINRGSSCGH-HMFYSGVVAGAREALI-CGVPSLSISL 197 (261)
Q Consensus 144 laL~~~l~~~~~PDLVISGIN~G~N~G~-~v~ySGTVgAA~EA~~-~GIPAIAvS~ 197 (261)
-+++.+++ || ..+|. ..+|--|++=+|||+. .|+|-|-+--
T Consensus 77 ~~vDvlvf-----Di--------QDvG~R~YTYi~Tl~~~MeAaa~~g~~vvVLDR 119 (365)
T PF07075_consen 77 KGVDVLVF-----DI--------QDVGVRFYTYISTLYYVMEAAAENGKPVVVLDR 119 (365)
T ss_pred hCCCEEEE-----eC--------ccCCchHHHHHHHHHHHHHHHHHhCCeEEEEeC
Confidence 66665543 33 34565 5679999999999976 8999998743
No 26
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=69.85 E-value=33 Score=29.39 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=25.8
Q ss_pred eEEEecCCCCCCcc----HHHHHHHHHhcCCCeEEEEeeCCCC
Q 024878 68 VLLVTNGDGIESPG----LVYLVEALVREGLYNVHVCAPQSDK 106 (261)
Q Consensus 68 ~ILlTNDDGi~SpG----i~aL~~aL~~~G~~~V~VvAP~~~q 106 (261)
|||+....-...-| +..|+++|.+.| |+|.++.+....
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g-~~v~v~~~~~~~ 42 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKG-HEVTIISLDKGE 42 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCC-CeEEEEecCCCC
Confidence 35555544332333 456888898888 899999998765
No 27
>PRK09864 putative peptidase; Provisional
Probab=69.41 E-value=12 Score=36.28 Aligned_cols=143 Identities=11% Similarity=0.049 Sum_probs=80.8
Q ss_pred cCCCCCCc------cHHHHHHHHHhcC--CCeEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHHH
Q 024878 73 NGDGIESP------GLVYLVEALVREG--LYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSL 144 (261)
Q Consensus 73 NDDGi~Sp------Gi~aL~~aL~~~G--~~~V~VvAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~y~V~GTPaDCV~l 144 (261)
|.+-+.++ |..+|.++|+... ..+|+.++--+|-=|...+.+....+ +..-+.+|+.||++.+--
T Consensus 165 ~~~~i~~kalDnR~g~~~lle~l~~l~~~~~~vy~v~TvQEEvGlrGA~~aa~~i-------~PDiaIavDvt~~~d~p~ 237 (356)
T PRK09864 165 GEDKVVGKALDNRIGCAMMAELLQTVNNPEITLYGVGSVEEEVGLRGAQTSAEHI-------KPDVVIVLDTAVAGDVPG 237 (356)
T ss_pred cCCEEEEEeCccHHHHHHHHHHHHHhhcCCCeEEEEEEcchhcchHHHHHHHhcC-------CCCEEEEEecccCCCCCC
Confidence 44446444 6777888777652 25888888887777776665532222 123367888888654321
Q ss_pred HHhcc--cCCCCCCcEEEe--cCCCCC-------------CCCCc--ccc-cchHHHHHHHHHcCCCeeEEeecccCCCC
Q 024878 145 ALSGA--LFSWSKPLLVIS--GINRGS-------------SCGHH--MFY-SGVVAGAREALICGVPSLSISLNWKKDES 204 (261)
Q Consensus 145 aL~~~--l~~~~~PDLVIS--GIN~G~-------------N~G~~--v~y-SGTVgAA~EA~~~GIPAIAvS~~~~~~~~ 204 (261)
.-... ..-++.|-|.+- |.+.-+ |+-.. +.. -||=|+|++-...|||++.+|...+.-.+
T Consensus 238 ~~~~~~~~~lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~~ggTDa~~i~~~~~Gvpt~~isiP~RY~Hs 317 (356)
T PRK09864 238 IDNIKYPLKLGQGPGLMLFDKRYFPNQKLVAALKSCAAHNDLPLQFSTMKTGATDGGRYNVMGGGRPVVALCLPTRYLHA 317 (356)
T ss_pred CcccccccccCCCCeEEEccCCccCCHHHHHHHHHHHHHcCCCceEEEcCCCCchHHHHHHhCCCCcEEEEeeccCcCCC
Confidence 11100 000234666332 332211 23322 122 38999999988899999999997553222
Q ss_pred -----CCccHHHHHHHHHHHHHH
Q 024878 205 -----QESDFKDAVSVCLPLINA 222 (261)
Q Consensus 205 -----~~~d~~~aa~~~~~li~~ 222 (261)
...|++.+.++...+++.
T Consensus 318 ~~e~~~~~D~e~~~~Ll~~~~~~ 340 (356)
T PRK09864 318 NSGMISKADYDALLTLIRDFLTT 340 (356)
T ss_pred cceEeEHHHHHHHHHHHHHHHHh
Confidence 224676666655554443
No 28
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=67.57 E-value=14 Score=35.32 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=30.2
Q ss_pred CCCCeEEEecCCCCCCccHHHHHHHHHhcCCCeEEEEeeC
Q 024878 64 SSKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQ 103 (261)
Q Consensus 64 ~~~~~ILlTNDDGi~SpGi~aL~~aL~~~G~~~V~VvAP~ 103 (261)
..+..||.++|=|.+ +=+..+++.|.+.| |+|+|+++.
T Consensus 3 ~~~~~~~~~~~~~~~-~R~~~~a~~L~~~G-~~V~ii~~~ 40 (415)
T cd03816 3 RKRVCVLVLGDIGRS-PRMQYHALSLAKHG-WKVDLVGYL 40 (415)
T ss_pred ccEEEEEEecccCCC-HHHHHHHHHHHhcC-ceEEEEEec
Confidence 356779999886665 45677899999999 899999874
No 29
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=66.63 E-value=15 Score=35.32 Aligned_cols=133 Identities=19% Similarity=0.143 Sum_probs=74.5
Q ss_pred cHHHHHHHHHhcC----CCeEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHHHHHhcccCCCCCC
Q 024878 81 GLVYLVEALVREG----LYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLALSGALFSWSKP 156 (261)
Q Consensus 81 Gi~aL~~aL~~~G----~~~V~VvAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~y~V~GTPaDCV~laL~~~l~~~~~P 156 (261)
|..+|.++|+... .++|+.++--+|.=|...|.+...- + +.+.+.+++.||+....---..-| ++.|
T Consensus 182 g~a~l~e~l~~l~~~~~~~~l~~~~tvqEEvG~rGA~~aa~~-----i--~pD~aI~vDv~~~~d~~~~~~~~l--g~Gp 252 (350)
T TIGR03107 182 GVLMILELLESLKDQELPNTLIAGANVQEEVGLRGAHVSTTK-----F--NPDIFFAVDCSPAGDIYGDQGGKL--GEGT 252 (350)
T ss_pred HHHHHHHHHHHhhhcCCCceEEEEEEChhhcCchhhhhHHhh-----C--CCCEEEEEecCCcCCCCCCCcccc--CCCc
Confidence 6677777776552 2578888887777776666553221 2 123467888888542110000011 2356
Q ss_pred cEEEe--cCCCCC-------------CCCCccccc--chHHHHHHHHHcCCCeeEEeecccCCCC-----CCccHHHHHH
Q 024878 157 LLVIS--GINRGS-------------SCGHHMFYS--GVVAGAREALICGVPSLSISLNWKKDES-----QESDFKDAVS 214 (261)
Q Consensus 157 DLVIS--GIN~G~-------------N~G~~v~yS--GTVgAA~EA~~~GIPAIAvS~~~~~~~~-----~~~d~~~aa~ 214 (261)
-|.+. |...-+ |+-.....+ ||=|+|+.=...|+|++.+|...+.-.+ ...|++.+++
T Consensus 253 ~i~~~D~~~i~~~~l~~~l~~~A~~~~I~~Q~~~~~gGtDa~~~~~~~~Gvpt~~i~ip~Ry~Hs~~e~i~~~D~~~~~~ 332 (350)
T TIGR03107 253 LLRFFDPGHIMLPRMKDFLLTTAEEAGIKYQYYVAKGGTDAGAAHLKNSGVPSTTIGVCARYIHSHQTLYSIDDFLAAQA 332 (350)
T ss_pred eEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEecCCCCchHHHHHHhCCCCcEEEEccCcccccChhheeeHHHHHHHHH
Confidence 66332 332211 222222233 7888888777899999999997653222 2246777766
Q ss_pred HHHHHHHH
Q 024878 215 VCLPLINA 222 (261)
Q Consensus 215 ~~~~li~~ 222 (261)
+...+++.
T Consensus 333 Ll~~~i~~ 340 (350)
T TIGR03107 333 FLQAIVKK 340 (350)
T ss_pred HHHHHHHh
Confidence 65555443
No 30
>PLN02316 synthase/transferase
Probab=65.06 E-value=57 Score=36.19 Aligned_cols=120 Identities=18% Similarity=0.102 Sum_probs=64.1
Q ss_pred CCCeEEEecCCC-CC--Ccc----HHHHHHHHHhcCCCeEEEEeeCCCC---ccccc-----ccCCC-CceEEEEeeeCC
Q 024878 65 SKPVLLVTNGDG-IE--SPG----LVYLVEALVREGLYNVHVCAPQSDK---SVSGH-----SVTLR-ETIAVSSAEING 128 (261)
Q Consensus 65 ~~~~ILlTNDDG-i~--SpG----i~aL~~aL~~~G~~~V~VvAP~~~q---Sg~g~-----siT~~-~pl~v~~v~~~g 128 (261)
..|+||..-=.- .. .-| +.+|.++|.+.| |+|.|+-|.... +.... .+... ..+++.....+|
T Consensus 586 ~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~G-h~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G 664 (1036)
T PLN02316 586 PPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLN-HNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWFGKVEG 664 (1036)
T ss_pred CCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcC-CEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEEEEECC
Confidence 448887654332 11 223 489999999999 899999998753 11111 01111 122333333345
Q ss_pred ceeEEec------------CChHHHHHHHH------hcccCCCCCCcEEEecCCCCCCCCCcccccchHHHHHHHH----
Q 024878 129 ATAYEVS------------GTPVDCVSLAL------SGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREAL---- 186 (261)
Q Consensus 129 ~~~y~V~------------GTPaDCV~laL------~~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~---- 186 (261)
...|.++ |.|-|...+++ ..+.....+||+|-+ +-+++|.+++.+...
T Consensus 665 V~vyfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHa----------HDW~talva~llk~~~~~~ 734 (1036)
T PLN02316 665 LSVYFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHC----------HDWSSAPVAWLFKDHYAHY 734 (1036)
T ss_pred cEEEEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEE----------CCChHHHHHHHHHHhhhhh
Confidence 4444443 33566665533 221111247888764 235788887765442
Q ss_pred -HcCCCeeEE
Q 024878 187 -ICGVPSLSI 195 (261)
Q Consensus 187 -~~GIPAIAv 195 (261)
+.++|.|-.
T Consensus 735 ~~~~~p~V~T 744 (1036)
T PLN02316 735 GLSKARVVFT 744 (1036)
T ss_pred ccCCCCEEEE
Confidence 245776643
No 31
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=64.46 E-value=7.9 Score=29.92 Aligned_cols=98 Identities=19% Similarity=0.182 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCCeEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHHHHHhccc-CCCCCCcEEE
Q 024878 82 LVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLALSGAL-FSWSKPLLVI 160 (261)
Q Consensus 82 i~aL~~aL~~~G~~~V~VvAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~y~V~GTPaDCV~laL~~~l-~~~~~PDLVI 160 (261)
+..|+++|.+.| |+|.|++|........ .....+++..+...... + .-+ ... ....+..++ ....+||+|.
T Consensus 7 ~~~l~~~L~~~G-~~V~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~-~~~-~~~-~~~~~~~~l~~~~~~~Dvv~ 78 (160)
T PF13579_consen 7 VRELARALAARG-HEVTVVTPQPDPEDDE---EEEDGVRVHRLPLPRRP-W-PLR-LLR-FLRRLRRLLAARRERPDVVH 78 (160)
T ss_dssp HHHHHHHHHHTT--EEEEEEE---GGG-S---EEETTEEEEEE--S-SS-S-GGG-HCC-HHHHHHHHCHHCT---SEEE
T ss_pred HHHHHHHHHHCC-CEEEEEecCCCCcccc---cccCCceEEeccCCccc-h-hhh-hHH-HHHHHHHHHhhhccCCeEEE
Confidence 578999999999 8999999987666211 11223444443322111 0 000 011 223444433 0246899997
Q ss_pred ecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEEeec
Q 024878 161 SGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLN 198 (261)
Q Consensus 161 SGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAvS~~ 198 (261)
.- + .+++.++. ......|+|-|.--.+
T Consensus 79 ~~---------~-~~~~~~~~-~~~~~~~~p~v~~~h~ 105 (160)
T PF13579_consen 79 AH---------S-PTAGLVAA-LARRRRGIPLVVTVHG 105 (160)
T ss_dssp EE---------H-HHHHHHHH-HHHHHHT--EEEE-SS
T ss_pred ec---------c-cchhHHHH-HHHHccCCcEEEEECC
Confidence 42 1 22343332 2223679999876654
No 32
>PRK06849 hypothetical protein; Provisional
Probab=63.24 E-value=12 Score=35.65 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=28.9
Q ss_pred CCCCeEEEecCCCCCCccHHHHHHHHHhcCCCeEEEEeeCC
Q 024878 64 SSKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQS 104 (261)
Q Consensus 64 ~~~~~ILlTNDDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~ 104 (261)
+.+++|||| |-..+.-..++++|.++| ++|+++....
T Consensus 2 ~~~~~VLI~---G~~~~~~l~iar~l~~~G-~~Vi~~d~~~ 38 (389)
T PRK06849 2 NTKKTVLIT---GARAPAALELARLFHNAG-HTVILADSLK 38 (389)
T ss_pred CCCCEEEEe---CCCcHHHHHHHHHHHHCC-CEEEEEeCCc
Confidence 457899999 555655677889999999 8999996653
No 33
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=61.93 E-value=7.6 Score=30.64 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCCeEEEEeeCCCC
Q 024878 82 LVYLVEALVREGLYNVHVCAPQSDK 106 (261)
Q Consensus 82 i~aL~~aL~~~G~~~V~VvAP~~~q 106 (261)
..+|.++|++.| |+|.++++..-+
T Consensus 15 ~lala~~L~~rG-h~V~~~~~~~~~ 38 (139)
T PF03033_consen 15 FLALARALRRRG-HEVRLATPPDFR 38 (139)
T ss_dssp HHHHHHHHHHTT--EEEEEETGGGH
T ss_pred HHHHHHHHhccC-CeEEEeecccce
Confidence 458999999999 999999887643
No 34
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=59.37 E-value=12 Score=34.20 Aligned_cols=37 Identities=19% Similarity=0.132 Sum_probs=26.7
Q ss_pred CeEEEec-CCCCC--CccHHHHHHHHHhcCCCeEEEEeeCC
Q 024878 67 PVLLVTN-GDGIE--SPGLVYLVEALVREGLYNVHVCAPQS 104 (261)
Q Consensus 67 ~~ILlTN-DDGi~--SpGi~aL~~aL~~~G~~~V~VvAP~~ 104 (261)
|+||+.. +.++. ..-+..|+++|.+.| |+|+|+++..
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G-~~V~v~~~~~ 40 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRG-HEVTIYTSHH 40 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCC-CeEEEEcCCC
Confidence 5666554 44432 234688999999999 8999999854
No 35
>COG0726 CDA1 Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]
Probab=58.50 E-value=18 Score=30.95 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=29.5
Q ss_pred CCeEEEecCCCCCCccHHHHHHHHHhcCCC-eEEEEe
Q 024878 66 KPVLLVTNGDGIESPGLVYLVEALVREGLY-NVHVCA 101 (261)
Q Consensus 66 ~~~ILlTNDDGi~SpGi~aL~~aL~~~G~~-~V~VvA 101 (261)
+..|.||-|||+...+...+.+.|++.+.. ..+|+.
T Consensus 64 ~k~v~lTFDDg~~~~~~~~il~iL~k~~i~ATfFv~g 100 (267)
T COG0726 64 GKAVALTFDDGPLDGNTPRILPLLKKYGIKATFFVVG 100 (267)
T ss_pred CCeEEEEeecCCCCCCcHHHHHHHHHcCCceEEEEeh
Confidence 466999999999998999999999999864 344444
No 36
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=58.41 E-value=12 Score=33.36 Aligned_cols=38 Identities=18% Similarity=0.150 Sum_probs=27.9
Q ss_pred CeEEEecCCCC-C--CccHHHHHHHHHhcCCCeEEEEeeCCC
Q 024878 67 PVLLVTNGDGI-E--SPGLVYLVEALVREGLYNVHVCAPQSD 105 (261)
Q Consensus 67 ~~ILlTNDDGi-~--SpGi~aL~~aL~~~G~~~V~VvAP~~~ 105 (261)
|+||+-|+... . ..-...|.++|.+.| |+|+|+++...
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G-~~v~v~~~~~~ 41 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAG-VDSTMLVQEKK 41 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcC-CceeEEEeecc
Confidence 67777766522 2 234678889999999 89999998764
No 37
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=58.19 E-value=16 Score=36.49 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=33.3
Q ss_pred CCCCcEEEecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEEe
Q 024878 153 WSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSIS 196 (261)
Q Consensus 153 ~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAvS 196 (261)
..+||+||.|+- .|.|..=.-.|||+.|.+. -.|||+|+-=
T Consensus 74 k~~pDv~iaGPa--FNagrYG~acg~va~aV~e-~~~IP~vt~M 114 (431)
T TIGR01918 74 DKEPDIFIAGPA--FNAGRYGVACGEICKVVQD-KLNVPAVTSM 114 (431)
T ss_pred hcCCCEEEEcCc--cCCccHHHHHHHHHHHHHH-hhCCCeEEEe
Confidence 468999999984 4888877778999888776 6799999754
No 38
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=57.13 E-value=86 Score=29.67 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=23.4
Q ss_pred CCCCcEEEecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEEeec
Q 024878 153 WSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLN 198 (261)
Q Consensus 153 ~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAvS~~ 198 (261)
..+||+||+ +|. ++| +-+++.|.++|+|.+-..++
T Consensus 89 ~~kPdvvi~---~Gg------y~s--~p~~~aa~~~~~p~~i~e~n 123 (352)
T PRK12446 89 KLKPDVIFS---KGG------FVS--VPVVIGGWLNRVPVLLHESD 123 (352)
T ss_pred hcCCCEEEe---cCc------hhh--HHHHHHHHHcCCCEEEECCC
Confidence 468999998 222 122 23567889999999865443
No 39
>PRK15405 ethanolamine utilization protein EutL; Provisional
Probab=56.64 E-value=68 Score=29.38 Aligned_cols=102 Identities=21% Similarity=0.187 Sum_probs=68.1
Q ss_pred ccHHHHHHHHHhcCCCeEEEEeeCCCCcccccccCCCC-ce---------------------------EEEEe------e
Q 024878 80 PGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRE-TI---------------------------AVSSA------E 125 (261)
Q Consensus 80 pGi~aL~~aL~~~G~~~V~VvAP~~~qSg~g~siT~~~-pl---------------------------~v~~v------~ 125 (261)
++|.++=+++++. +|-|+-+.+-+-|.||+-|--. .+ ..... +
T Consensus 46 ~~i~AaDeA~KAA---nVevv~a~~~~gGaghg~~~~~G~viiIi~G~dvsdVrsAveaa~~~i~~~~~f~~~n~~g~~~ 122 (217)
T PRK15405 46 VTYTALDEATKQA---MVEVVYARSFYAGAAHASTPLAGEVIGILAGPNPAEVRAGLDAMVAFIENGAAFQSANDDDSTA 122 (217)
T ss_pred hHHhHHHHHHhhc---ceEEEEEEeeccccccCCCCCCccEEEEEeCCCHHHHHHHHHHHHHHHHhhhceEeeCCCCCEE
Confidence 8999998888874 7999999999999999763210 00 00000 0
Q ss_pred e-------------------CCceeEEecCChHHHHHHHHhcccCCCCCCcEE-EecCCCCCCCCCcccccchHHHHHHH
Q 024878 126 I-------------------NGATAYEVSGTPVDCVSLALSGALFSWSKPLLV-ISGINRGSSCGHHMFYSGVVAGAREA 185 (261)
Q Consensus 126 ~-------------------~g~~~y~V~GTPaDCV~laL~~~l~~~~~PDLV-ISGIN~G~N~G~~v~ySGTVgAA~EA 185 (261)
+ .|...=++=|-|+- -.++++..+. --..++| ..||..|.|.|. .+.||+-+|.++|
T Consensus 123 ~~a~~~aRag~~l~k~~g~~~G~a~~~li~~P~~-~~~~~D~AlK-aA~V~~~~~~~P~~~t~f~~-~~ltG~~~A~r~A 199 (217)
T PRK15405 123 FFAHVVSRTGSYLSKTAGIAEGEPLAYLIAPPLE-AMYGIDAALK-AADVQLVTFVGPPSETNFGG-ALLTGSQSACKAA 199 (217)
T ss_pred EEEEEcccHHHHHHHHcCCCCCceeEEEecCcHH-HHHHHHHHHh-hcCceEEEEeCCCCCceecC-eeEEeCHHHHHHH
Confidence 0 12111234578844 5566676663 2456775 899999999887 7889999998888
Q ss_pred HH
Q 024878 186 LI 187 (261)
Q Consensus 186 ~~ 187 (261)
+.
T Consensus 200 ~~ 201 (217)
T PRK15405 200 CN 201 (217)
T ss_pred HH
Confidence 64
No 40
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=56.23 E-value=60 Score=31.87 Aligned_cols=80 Identities=21% Similarity=0.245 Sum_probs=47.9
Q ss_pred HHHHhcccCCCCCCcEEEecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEEeecccCCC---------------CCCc
Q 024878 143 SLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDE---------------SQES 207 (261)
Q Consensus 143 ~laL~~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAvS~~~~~~~---------------~~~~ 207 (261)
.++|+..+ ..-||||.|= |.=-.....=...++-|+.|..+|+|.|+|+-....+. ....
T Consensus 274 ~~~l~~~l---~~ADlVITGE--G~~D~Qtl~GK~p~~Va~~A~~~~vPviai~G~v~~~~~~~~~~g~~a~~~i~~~~~ 348 (375)
T TIGR00045 274 LLDLEQKI---KDADLVITGE--GRLDRQSLMGKAPVGVAKRAKKYGVPVIAIAGSLGDGVDVLPQHGIDAAFSILPSPM 348 (375)
T ss_pred hhCHHHHh---cCCCEEEECC--CcccccccCCchHHHHHHHHHHhCCeEEEEecccCCChHHHHhcCccEEEEcCCCCC
Confidence 44444433 4689999983 32222222334567999999999999999976532110 1233
Q ss_pred cHHHHHHHHHHHHHHHHHHh
Q 024878 208 DFKDAVSVCLPLINAATRDI 227 (261)
Q Consensus 208 d~~~aa~~~~~li~~l~~~~ 227 (261)
+++++-+.+.+++++..+++
T Consensus 349 ~l~~a~~~~~~~l~~~~~~~ 368 (375)
T TIGR00045 349 PLEDALQNASTNLERTAENI 368 (375)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 56666555556666655544
No 41
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=56.01 E-value=18 Score=36.24 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=33.3
Q ss_pred CCCCcEEEecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEEe
Q 024878 153 WSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSIS 196 (261)
Q Consensus 153 ~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAvS 196 (261)
..+||+||.|+- .|.|..=.-.|||+.|.+. -.|||+|+-=
T Consensus 74 k~~pDv~iaGPa--FNagrYG~acg~va~aV~e-~~~IP~vtaM 114 (431)
T TIGR01917 74 GANPDIFIAGPA--FNAGRYGMAAGAITKAVQD-ELGIKAFTAM 114 (431)
T ss_pred hcCCCEEEEcCc--cCCccHHHHHHHHHHHHHH-hhCCCeEEEe
Confidence 468999999984 4888877778999888776 6799999754
No 42
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=55.87 E-value=13 Score=32.93 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=25.0
Q ss_pred CCCCCCccHHHHHHHHHhcCCCeEEEEeeCCCC
Q 024878 74 GDGIESPGLVYLVEALVREGLYNVHVCAPQSDK 106 (261)
Q Consensus 74 DDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~~q 106 (261)
++|+.-.=+..-++.|.+.| ++|.++.|....
T Consensus 17 ~~G~~~~E~~~p~~~l~~aG-~~V~~as~~g~~ 48 (221)
T cd03141 17 PTGLWLEELAHPYDVFTEAG-YEVDFASPKGGK 48 (221)
T ss_pred cCccCHHHHHHHHHHHHHCC-CeEEEECCCCCC
Confidence 45665555677789999999 799999997654
No 43
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=55.66 E-value=1.1e+02 Score=27.78 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.4
Q ss_pred ccHHHHHHHHHhcCCCeEEEEeeCCC
Q 024878 80 PGLVYLVEALVREGLYNVHVCAPQSD 105 (261)
Q Consensus 80 pGi~aL~~aL~~~G~~~V~VvAP~~~ 105 (261)
--+..|+++|++.| |+|.|+++...
T Consensus 25 ~~~~~l~~~L~~~g-~~V~v~~~~~~ 49 (398)
T cd03800 25 VYVLELARALARLG-HEVDIFTRRID 49 (398)
T ss_pred ehHHHHHHHHhccC-ceEEEEEecCC
Confidence 46899999999999 89999997654
No 44
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=54.86 E-value=31 Score=33.09 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCCCeEEEEeeCCCC
Q 024878 82 LVYLVEALVREGLYNVHVCAPQSDK 106 (261)
Q Consensus 82 i~aL~~aL~~~G~~~V~VvAP~~~q 106 (261)
+..|.++|.+.| |+|.|+.|.-.+
T Consensus 22 ~~~L~~aL~~~G-~~V~Vi~p~y~~ 45 (476)
T cd03791 22 VGALPKALAKLG-HDVRVIMPKYGR 45 (476)
T ss_pred HHHHHHHHHHCC-CeEEEEecCCcc
Confidence 478999999999 899999997664
No 45
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=52.10 E-value=19 Score=32.26 Aligned_cols=39 Identities=28% Similarity=0.288 Sum_probs=30.2
Q ss_pred CCeEEEec---CCCCCCccHHHHHHHHHhcCCCeEEEEeeCCC
Q 024878 66 KPVLLVTN---GDGIESPGLVYLVEALVREGLYNVHVCAPQSD 105 (261)
Q Consensus 66 ~~~ILlTN---DDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~~ 105 (261)
+.-||+|+ =||++-.-+..-+++|+++| ++|.+++|...
T Consensus 3 kVlills~~~~~dG~e~~E~~~P~~~L~~aG-~~V~~aSp~~~ 44 (217)
T PRK11780 3 KIAVILSGCGVYDGSEIHEAVLTLLALDRAG-AEAVCFAPDIP 44 (217)
T ss_pred EEEEEEccCCCCCCEehhHHHHHHHHHHHCC-CEEEEEeCCCC
Confidence 34466663 14887777888899999999 79999999764
No 46
>PRK10342 glycerate kinase I; Provisional
Probab=49.13 E-value=93 Score=30.69 Aligned_cols=43 Identities=21% Similarity=0.126 Sum_probs=30.3
Q ss_pred CCCcEEEecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEEeec
Q 024878 154 SKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLN 198 (261)
Q Consensus 154 ~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAvS~~ 198 (261)
..-||||.|= |.=-.....=-..+|-|+.|.-+|+|.|||.-.
T Consensus 283 ~~ADLVITGE--G~~D~QTl~GK~p~gVa~~A~~~~vPviai~G~ 325 (381)
T PRK10342 283 HDCTLVITGE--GRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGS 325 (381)
T ss_pred ccCCEEEECC--CcCcccccCCccHHHHHHHHHHhCCCEEEEecc
Confidence 3579999983 332222233344669999999999999999764
No 47
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=47.24 E-value=32 Score=26.90 Aligned_cols=102 Identities=20% Similarity=0.263 Sum_probs=56.3
Q ss_pred EEEecCCCCCCccHHHHHHHHHhcCCCeEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHH-HHHh
Q 024878 69 LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVS-LALS 147 (261)
Q Consensus 69 ILlTNDDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~y~V~GTPaDCV~-laL~ 147 (261)
++|+|.+. +-+.-+++.|++.| ++|+|+++..+. .......-+.+.++... ..+ |..-.. ..+.
T Consensus 3 l~i~~~~~---~~~~~~~~~L~~~g-~~V~ii~~~~~~----~~~~~~~~i~~~~~~~~------~k~-~~~~~~~~~l~ 67 (139)
T PF13477_consen 3 LLIGNTPS---TFIYNLAKELKKRG-YDVHIITPRNDY----EKYEIIEGIKVIRLPSP------RKS-PLNYIKYFRLR 67 (139)
T ss_pred EEEecCcH---HHHHHHHHHHHHCC-CEEEEEEcCCCc----hhhhHhCCeEEEEecCC------CCc-cHHHHHHHHHH
Confidence 56778774 45788999999999 899999995443 22222233333333211 112 333222 2444
Q ss_pred cccCCCCCCcEEEecCCCCCCCCCccccc-chHHHHHHHHHcC-CCeeEEee
Q 024878 148 GALFSWSKPLLVISGINRGSSCGHHMFYS-GVVAGAREALICG-VPSLSISL 197 (261)
Q Consensus 148 ~~l~~~~~PDLVISGIN~G~N~G~~v~yS-GTVgAA~EA~~~G-IPAIAvS~ 197 (261)
.++ +..+||+|.+-- ..+ |.+| .+.+.+.| +|-|.-..
T Consensus 68 k~i-k~~~~DvIh~h~----------~~~~~~~~-~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 68 KII-KKEKPDVIHCHT----------PSPYGLFA-MLAKKLLKNKKVIYTVH 107 (139)
T ss_pred HHh-ccCCCCEEEEec----------CChHHHHH-HHHHHHcCCCCEEEEec
Confidence 434 346899996421 122 3333 34456788 88884433
No 48
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=46.52 E-value=35 Score=27.56 Aligned_cols=30 Identities=33% Similarity=0.390 Sum_probs=24.0
Q ss_pred eEEEecCCCCCCccHHHHHHHHHhcCCCeEEEEeeC
Q 024878 68 VLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQ 103 (261)
Q Consensus 68 ~ILlTNDDGi~SpGi~aL~~aL~~~G~~~V~VvAP~ 103 (261)
-||+|.|- .+..+.+.|++.| .+|+++++.
T Consensus 103 ivLvSgD~-----Df~~~i~~lr~~G-~~V~v~~~~ 132 (149)
T cd06167 103 IVLVSGDS-----DFVPLVERLRELG-KRVIVVGFE 132 (149)
T ss_pred EEEEECCc-----cHHHHHHHHHHcC-CEEEEEccC
Confidence 48888765 5666778888889 699999998
No 49
>PLN00016 RNA-binding protein; Provisional
Probab=46.52 E-value=29 Score=32.73 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=29.4
Q ss_pred CCCCeEEEecCCCCCCccH-HHHHHHHHhcCCCeEEEEeeCC
Q 024878 64 SSKPVLLVTNGDGIESPGL-VYLVEALVREGLYNVHVCAPQS 104 (261)
Q Consensus 64 ~~~~~ILlTNDDGi~SpGi-~aL~~aL~~~G~~~V~VvAP~~ 104 (261)
.+.++|||||-+|=.+-.| ..|++.|.+.| |+|+++.-..
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R~~ 90 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTRGK 90 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEecCC
Confidence 4457899998877655433 56778888888 8999888543
No 50
>PLN02939 transferase, transferring glycosyl groups
Probab=45.75 E-value=87 Score=34.59 Aligned_cols=41 Identities=24% Similarity=0.256 Sum_probs=29.1
Q ss_pred CCCCeEEEecCCC---CCCcc----HHHHHHHHHhcCCCeEEEEeeCCC
Q 024878 64 SSKPVLLVTNGDG---IESPG----LVYLVEALVREGLYNVHVCAPQSD 105 (261)
Q Consensus 64 ~~~~~ILlTNDDG---i~SpG----i~aL~~aL~~~G~~~V~VvAP~~~ 105 (261)
.++|+||..-=-= ...-| +.+|-++|++.| |+|.|+.|.-.
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~G-hdV~VIlP~Y~ 526 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKG-HLVEIVLPKYD 526 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcC-CeEEEEeCCCc
Confidence 4678888763211 12224 578999999999 89999999664
No 51
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=44.79 E-value=1.1e+02 Score=26.11 Aligned_cols=79 Identities=15% Similarity=0.048 Sum_probs=46.6
Q ss_pred CCCCeEEEecCCCCCCccHHHHHHHHHhcCCCeEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHH
Q 024878 64 SSKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVS 143 (261)
Q Consensus 64 ~~~~~ILlTNDDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~y~V~GTPaDCV~ 143 (261)
.+..+||||--.|.- | +.+++.|.+.| ++|+++.... +.. .. .....|.+|=+-.+.+.
T Consensus 6 ~~~k~vlItGas~~i--G-~~la~~l~~~G-~~v~~~~~~~--------~~~-~~--------~~~~~~~~D~~~~~~~~ 64 (252)
T PRK08220 6 FSGKTVWVTGAAQGI--G-YAVALAFVEAG-AKVIGFDQAF--------LTQ-ED--------YPFATFVLDVSDAAAVA 64 (252)
T ss_pred CCCCEEEEeCCCchH--H-HHHHHHHHHCC-CEEEEEecch--------hhh-cC--------CceEEEEecCCCHHHHH
Confidence 445679999544311 2 56677888888 7888886543 000 00 11234666766666777
Q ss_pred HHHhcccCCCCCCcEEEecC
Q 024878 144 LALSGALFSWSKPLLVISGI 163 (261)
Q Consensus 144 laL~~~l~~~~~PDLVISGI 163 (261)
-.+..+.....++|+||.-.
T Consensus 65 ~~~~~~~~~~~~id~vi~~a 84 (252)
T PRK08220 65 QVCQRLLAETGPLDVLVNAA 84 (252)
T ss_pred HHHHHHHHHcCCCCEEEECC
Confidence 66665433335689998743
No 52
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=44.05 E-value=16 Score=35.47 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=18.3
Q ss_pred ccchHHHHHHHHHcCCCeeEEeec
Q 024878 175 YSGVVAGAREALICGVPSLSISLN 198 (261)
Q Consensus 175 ySGTVgAA~EA~~~GIPAIAvS~~ 198 (261)
-+||+ |+||++.|+|||.+.-+
T Consensus 259 ~ggTM--arEaAlLGtpaIs~~pG 280 (346)
T COG1817 259 AGGTM--AREAALLGTPAISCYPG 280 (346)
T ss_pred CCchH--HHHHHHhCCceEEecCC
Confidence 37887 68999999999988744
No 53
>PRK09932 glycerate kinase II; Provisional
Probab=43.24 E-value=1.3e+02 Score=29.66 Aligned_cols=43 Identities=23% Similarity=0.147 Sum_probs=29.8
Q ss_pred CCCcEEEecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEEeec
Q 024878 154 SKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLN 198 (261)
Q Consensus 154 ~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAvS~~ 198 (261)
..-||||.| .|.=-.....=-..+|-|+.|.-+|+|.|+|+-.
T Consensus 283 ~~ADlVITG--EG~~D~Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~ 325 (381)
T PRK09932 283 QGAALVITG--EGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGV 325 (381)
T ss_pred ccCCEEEEC--CCcccccccCCccHHHHHHHHHHcCCCEEEEecc
Confidence 468999998 3322222222233669999999999999999865
No 54
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=43.14 E-value=38 Score=29.51 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=23.2
Q ss_pred CCccHHHHHHHHHhcCCCeEEEEeeCCCC
Q 024878 78 ESPGLVYLVEALVREGLYNVHVCAPQSDK 106 (261)
Q Consensus 78 ~SpGi~aL~~aL~~~G~~~V~VvAP~~~q 106 (261)
.+--++.|+++|.+.| |+|+++.+....
T Consensus 16 ~~~~~~~l~~~L~~~g-~~v~v~~~~~~~ 43 (374)
T cd03817 16 VATSIRRLAEELEKRG-HEVYVVAPSYPG 43 (374)
T ss_pred eehHHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 4556889999999999 899999987643
No 55
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=42.95 E-value=66 Score=29.84 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=21.4
Q ss_pred ccHHHHHHHHHhcCCCeEEEEeeCCC
Q 024878 80 PGLVYLVEALVREGLYNVHVCAPQSD 105 (261)
Q Consensus 80 pGi~aL~~aL~~~G~~~V~VvAP~~~ 105 (261)
--+..|+++|.+.| |+|+|+++...
T Consensus 24 ~~v~~la~~L~~~G-~~V~v~~~~~~ 48 (405)
T TIGR03449 24 VYILETATELARRG-IEVDIFTRATR 48 (405)
T ss_pred ehHHHHHHHHhhCC-CEEEEEecccC
Confidence 35789999999999 89999998753
No 56
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=41.61 E-value=80 Score=25.29 Aligned_cols=36 Identities=39% Similarity=0.509 Sum_probs=30.0
Q ss_pred eEEEecCCCCCCccHHHHHHHHHhcCCCeEEEEeeCCCC
Q 024878 68 VLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDK 106 (261)
Q Consensus 68 ~ILlTNDDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~~q 106 (261)
-||+. ||+....+..+++.|+..| .+|.++.|..+.
T Consensus 5 ~ill~--~g~~~~e~~~~~~~~~~a~-~~v~vvs~~~~~ 40 (142)
T cd03132 5 GILVA--DGVDAAELSALKAALKAAG-ANVKVVAPTLGG 40 (142)
T ss_pred EEEEc--CCcCHHHHHHHHHHHHHCC-CEEEEEecCcCc
Confidence 35555 5788889999999999998 799999998754
No 57
>PRK07856 short chain dehydrogenase; Provisional
Probab=41.28 E-value=1.3e+02 Score=26.09 Aligned_cols=37 Identities=30% Similarity=0.516 Sum_probs=26.3
Q ss_pred CCCCeEEEecCCCCCCccH-HHHHHHHHhcCCCeEEEEeeCCC
Q 024878 64 SSKPVLLVTNGDGIESPGL-VYLVEALVREGLYNVHVCAPQSD 105 (261)
Q Consensus 64 ~~~~~ILlTNDDGi~SpGi-~aL~~aL~~~G~~~V~VvAP~~~ 105 (261)
.+..+||||=- +-|| +++++.|.+.| ++|+++.-..+
T Consensus 4 ~~~k~~lItGa----s~gIG~~la~~l~~~g-~~v~~~~r~~~ 41 (252)
T PRK07856 4 LTGRVVLVTGG----TRGIGAGIARAFLAAG-ATVVVCGRRAP 41 (252)
T ss_pred CCCCEEEEeCC----CchHHHHHHHHHHHCC-CEEEEEeCChh
Confidence 44567899843 3455 67888998888 79988876543
No 58
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=41.22 E-value=47 Score=27.39 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=25.3
Q ss_pred CCCeEEEecCCCCCCccHHHHHHHHHhcCCCeEEEEe
Q 024878 65 SKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCA 101 (261)
Q Consensus 65 ~~~~ILlTNDDGi~SpGi~aL~~aL~~~G~~~V~VvA 101 (261)
.+.-||+| ||.....+...++.|++.| -++++|+
T Consensus 104 ~k~iillT--DG~~~~~~~~~a~~lk~~g-i~i~~ig 137 (164)
T cd01482 104 PKVVILIT--DGKSQDDVELPARVLRNLG-VNVFAVG 137 (164)
T ss_pred CEEEEEEc--CCCCCchHHHHHHHHHHCC-CEEEEEe
Confidence 44567777 7877777888889999988 4666664
No 59
>PF00381 PTS-HPr: PTS HPr component phosphorylation site; InterPro: IPR005698 The histidine-containing phosphocarrier protein (HPr) is a central component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), which transfers metabolic carbohydrates across the cell membrane in many bacterial species [, ]. PTS catalyses the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is as follows: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to Enzyme I (EI) of the PTS, which in turn transfers it to the phosphoryl carrier protein (HPr) [, ]. Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease complex (enzymes EII/EIII). HPr [, ] is a small cytoplasmic protein of 70 to 90 amino acid residues. In some bacteria, HPr is a domain in a larger protein that includes a EIII(Fru) (IIA) domain and in some cases also the EI domain. A conserved histidine in the N-terminal section of HPr serves as an acceptor for the phosphoryl group of EI. In the central part of HPr, there is a conserved serine which (in Gram-positive bacteria only) is phosphorylated by an ATP-dependent protein kinase; a process which probably play a regulatory role in sugar transport. The overall architecture of the HPr domain has been described as an open faced beta-sandwich in which a beta-sheet is packed against three alpha-helices. Regulatory phosphorylation at the conserved Ser residue does not appear to induce large structural changes to the HPr domain, in particular in the region of the active site [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TXE_A 1QR5_A 1RZR_S 2NZU_L 2OEN_L 2NZV_L 1Y51_B 1Y4Y_A 1Y50_A 2HPR_A ....
Probab=39.27 E-value=47 Score=24.90 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=28.5
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCeEEEE
Q 024878 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVC 100 (261)
Q Consensus 67 ~~ILlTNDDGi~SpGi~aL~~aL~~~G~~~V~Vv 100 (261)
-.+.|+|+.|+++---..|++..++.. .+|+|.
T Consensus 4 ~~~~i~~~~GlHaRpa~~lv~~a~~~~-~~i~i~ 36 (84)
T PF00381_consen 4 REVTIKNPNGLHARPAAELVQIASKFD-SDITIR 36 (84)
T ss_dssp EEEEEESTTSSSHHHHHHHHHHHHTSS-SEEEEE
T ss_pred EEEEEcCCCcccHHHHHHHHHHHhhCC-CEEEEE
Confidence 358899999999999999999999886 677776
No 60
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=39.09 E-value=21 Score=31.67 Aligned_cols=22 Identities=32% Similarity=0.735 Sum_probs=19.4
Q ss_pred Ccccccc-hHHHHHHHHH-cCCCe
Q 024878 171 HHMFYSG-VVAGAREALI-CGVPS 192 (261)
Q Consensus 171 ~~v~ySG-TVgAA~EA~~-~GIPA 192 (261)
.||+|+| ||=||+.|.+ +|-|+
T Consensus 103 DDVLytGRTIRAAldal~d~GRPa 126 (179)
T COG2065 103 DDVLYTGRTIRAALDALVDYGRPA 126 (179)
T ss_pred eeecccCccHHHHHHHHHhcCCcc
Confidence 3799999 9999999977 88887
No 61
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=37.81 E-value=31 Score=27.35 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=18.0
Q ss_pred eEEEecCCCCCCccHHHHHHHHHhcCCCeEEEEee
Q 024878 68 VLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAP 102 (261)
Q Consensus 68 ~ILlTNDDGi~SpGi~aL~~aL~~~G~~~V~VvAP 102 (261)
-||+|.|. .+..+++.|++.| .+|+|++.
T Consensus 99 ivLvSgD~-----Df~~~v~~l~~~g-~~V~v~~~ 127 (146)
T PF01936_consen 99 IVLVSGDS-----DFAPLVRKLRERG-KRVIVVGA 127 (146)
T ss_dssp EEEE---G-----GGHHHHHHHHHH---EEEEEE-
T ss_pred EEEEECcH-----HHHHHHHHHHHcC-CEEEEEEe
Confidence 48888883 4667778888889 69999984
No 62
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=37.28 E-value=25 Score=33.69 Aligned_cols=19 Identities=42% Similarity=0.670 Sum_probs=15.9
Q ss_pred cchHHHHHHHHHcCCCeeEEe
Q 024878 176 SGVVAGAREALICGVPSLSIS 196 (261)
Q Consensus 176 SGTVgAA~EA~~~GIPAIAvS 196 (261)
+||+ |+||++.|+|+|.+.
T Consensus 256 ggTM--a~EAA~LGtPaIs~~ 274 (335)
T PF04007_consen 256 GGTM--AREAALLGTPAISCF 274 (335)
T ss_pred CcHH--HHHHHHhCCCEEEec
Confidence 6887 569999999999753
No 63
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=36.89 E-value=65 Score=28.98 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=26.9
Q ss_pred EEEecCCCCCCccHHHHHHHHHhcCCCeEEEEeeCC
Q 024878 69 LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQS 104 (261)
Q Consensus 69 ILlTNDDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~ 104 (261)
|+.+++-|=...-+..|++.|.+.| |+|+|+....
T Consensus 5 ~~~~p~~gG~~~~~~~la~~L~~~G-~~v~v~~~~~ 39 (371)
T cd04962 5 IVCYPTYGGSGVVATELGKALARRG-HEVHFITSSR 39 (371)
T ss_pred EEEEeCCCCccchHHHHHHHHHhcC-CceEEEecCC
Confidence 4444555555667899999999999 8999998754
No 64
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=36.73 E-value=52 Score=28.79 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=26.1
Q ss_pred CCCeEEEecCCCCCCccHHHHHHHHHhcCCCeEEEEe
Q 024878 65 SKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCA 101 (261)
Q Consensus 65 ~~~~ILlTNDDGi~SpGi~aL~~aL~~~G~~~V~VvA 101 (261)
.+.-|||| ||.....+...++.|++.| -.|++|+
T Consensus 109 ~kvvillT--DG~s~~~~~~~a~~lk~~g-v~i~~Vg 142 (224)
T cd01475 109 PRVGIVVT--DGRPQDDVSEVAAKARALG-IEMFAVG 142 (224)
T ss_pred CeEEEEEc--CCCCcccHHHHHHHHHHCC-cEEEEEe
Confidence 44557887 7776677889999999988 4777775
No 65
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=36.52 E-value=41 Score=28.37 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=15.6
Q ss_pred CCCCccHHHHHHHHHhcC
Q 024878 76 GIESPGLVYLVEALVREG 93 (261)
Q Consensus 76 Gi~SpGi~aL~~aL~~~G 93 (261)
.+.+||...+++.|++.|
T Consensus 26 ~~~~~~~~~a~~~l~~~G 43 (157)
T smart00775 26 DWTHPGVAKLYRDIQNNG 43 (157)
T ss_pred CcCCHHHHHHHHHHHHcC
Confidence 378999999999998866
No 66
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=36.16 E-value=37 Score=30.48 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCCCeEEEEeeCC
Q 024878 82 LVYLVEALVREGLYNVHVCAPQS 104 (261)
Q Consensus 82 i~aL~~aL~~~G~~~V~VvAP~~ 104 (261)
...|.++|.+.| |+|.|+.|.-
T Consensus 22 ~~~L~kaL~~~G-~~V~Vi~P~y 43 (245)
T PF08323_consen 22 VGSLPKALAKQG-HDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHTT--EEEEEEE-T
T ss_pred HHHHHHHHHhcC-CeEEEEEccc
Confidence 478999999999 8999999976
No 67
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=35.88 E-value=38 Score=20.53 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=22.1
Q ss_pred CCCeEEEecCCCCCCccHHHHHHHHH
Q 024878 65 SKPVLLVTNGDGIESPGLVYLVEALV 90 (261)
Q Consensus 65 ~~~~ILlTNDDGi~SpGi~aL~~aL~ 90 (261)
..++.|==+|-.+.-.|..+|.++|+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEALK 27 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHhc
Confidence 35667777899999999999999986
No 68
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=35.72 E-value=67 Score=27.93 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=22.5
Q ss_pred CccHHHHHHHHHhcCCCeEEEEeeCCCCc
Q 024878 79 SPGLVYLVEALVREGLYNVHVCAPQSDKS 107 (261)
Q Consensus 79 SpGi~aL~~aL~~~G~~~V~VvAP~~~qS 107 (261)
..-++.|+++|.+.| |+|.++.+.....
T Consensus 17 ~~~~~~l~~~L~~~g-~~v~~~~~~~~~~ 44 (394)
T cd03794 17 AFRTTELAEELVKRG-HEVTVITGSPNYP 44 (394)
T ss_pred ceeHHHHHHHHHhCC-ceEEEEecCCCcc
Confidence 345788999999999 8999999875433
No 69
>PRK15415 propanediol utilization protein PduB; Provisional
Probab=35.57 E-value=49 Score=31.14 Aligned_cols=56 Identities=23% Similarity=0.252 Sum_probs=44.9
Q ss_pred EecCChHHHHHHHHhcccCCCCCCcEE-EecCCCCCCCCCc--ccccchHHHHHHHHHcC
Q 024878 133 EVSGTPVDCVSLALSGALFSWSKPLLV-ISGINRGSSCGHH--MFYSGVVAGAREALICG 189 (261)
Q Consensus 133 ~V~GTPaDCV~laL~~~l~~~~~PDLV-ISGIN~G~N~G~~--v~ySGTVgAA~EA~~~G 189 (261)
.+-+.|+-.-..+.+..+. --..+|+ +..|..|.++|.- ++.+|.+||-++|+..+
T Consensus 185 iie~~p~a~gi~aaD~AlK-aA~Velv~~~~p~~gt~~~Gk~~~~itGDvsAV~~Av~Aa 243 (266)
T PRK15415 185 IIVGAPAGIGVVMADTALK-SANVDVVAYSSPAHGTSFSNEVILTISGDSGAVRQAVIAA 243 (266)
T ss_pred EEEcCcHHHHHHHHHHHHh-hcCeeEEEEEcCccccccCCeEEEEEEecHHHHHHHHHHH
Confidence 5689999988888887764 3467888 7889999999874 56899999999987543
No 70
>PRK11249 katE hydroperoxidase II; Provisional
Probab=34.86 E-value=1.3e+02 Score=32.43 Aligned_cols=39 Identities=18% Similarity=0.366 Sum_probs=32.3
Q ss_pred CCCeEEEecCCCCCCccHHHHHHHHHhcCCCeEEEEeeCC
Q 024878 65 SKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQS 104 (261)
Q Consensus 65 ~~~~ILlTNDDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~ 104 (261)
+.++|.|-=.||.+...+..++++|.+.| .+|.||+|..
T Consensus 596 ~gRKIaILVaDG~d~~ev~~~~daL~~AG-a~V~VVSp~~ 634 (752)
T PRK11249 596 KGRKVAILLNDGVDAADLLAILKALKAKG-VHAKLLYPRM 634 (752)
T ss_pred cccEEEEEecCCCCHHHHHHHHHHHHHCC-CEEEEEECCC
Confidence 34455555578999999999999999999 6999999976
No 71
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=34.69 E-value=42 Score=28.84 Aligned_cols=37 Identities=35% Similarity=0.419 Sum_probs=27.9
Q ss_pred EEecCCCCCCccHHHHHHHHHhcCCCeEEEEeeCCCCc
Q 024878 70 LVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKS 107 (261)
Q Consensus 70 LlTNDDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~~qS 107 (261)
+|++-.|-...-++.|++.|.+.| |+|+++.+.....
T Consensus 4 ~i~~~~~g~~~~~~~l~~~L~~~g-~~v~~~~~~~~~~ 40 (359)
T cd03808 4 HIVTVDGGLYSFRLPLIKALRAAG-YEVHVVAPPGDEL 40 (359)
T ss_pred EEEecchhHHHHHHHHHHHHHhcC-CeeEEEecCCCcc
Confidence 344444545567888999999998 8999999887654
No 72
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=33.99 E-value=64 Score=31.67 Aligned_cols=61 Identities=28% Similarity=0.220 Sum_probs=36.7
Q ss_pred EecCChHHHHHHHHhcccCCCCCCcEEEecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEEeec
Q 024878 133 EVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLN 198 (261)
Q Consensus 133 ~V~GTPaDCV~laL~~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAvS~~ 198 (261)
.++|...=.=.++|...+ ..-||||.| .|..-.....=....+-|+.|.-+|+|.|||.-.
T Consensus 265 l~sG~~~v~~~~~l~~~l---~~aDlVITG--EG~~D~Qtl~GK~p~~Va~~A~~~~vPviav~G~ 325 (377)
T PF02595_consen 265 LVSGIDLVLELLGLEERL---EDADLVITG--EGRLDAQTLAGKVPGGVARLAKKHGVPVIAVAGS 325 (377)
T ss_dssp EEEHHHHHHHHTTHHHHC---CC-SEEEE----CECSTTTTTTCHHHHHHCCHCCTT--EEEEECE
T ss_pred ECchHHHHHHhcCHHHHh---cCCCEEEEC--ccccccccCCCcHHHHHHHHHHHcCCcEEEEeCC
Confidence 456666555556666654 368999999 4443333333344557788888999999999865
No 73
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=33.98 E-value=61 Score=29.56 Aligned_cols=34 Identities=24% Similarity=0.058 Sum_probs=24.3
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcC-CCeEEEEeeCCC
Q 024878 67 PVLLVTNGDGIESPGLVYLVEALVREG-LYNVHVCAPQSD 105 (261)
Q Consensus 67 ~~ILlTNDDGi~SpGi~aL~~aL~~~G-~~~V~VvAP~~~ 105 (261)
|+||||+-. .++ .++++|+++| .++|+++-+...
T Consensus 2 ~~vLv~g~~----~~~-~~~~~l~~~~~g~~vi~~d~~~~ 36 (326)
T PRK12767 2 MNILVTSAG----RRV-QLVKALKKSLLKGRVIGADISEL 36 (326)
T ss_pred ceEEEecCC----ccH-HHHHHHHHhccCCEEEEECCCCc
Confidence 789999873 334 7888888885 267887766543
No 74
>PRK14099 glycogen synthase; Provisional
Probab=33.84 E-value=1e+02 Score=30.60 Aligned_cols=22 Identities=27% Similarity=0.209 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCCCeEEEEeeCC
Q 024878 82 LVYLVEALVREGLYNVHVCAPQS 104 (261)
Q Consensus 82 i~aL~~aL~~~G~~~V~VvAP~~ 104 (261)
+.+|-++|++.| |+|.|+.|.-
T Consensus 26 ~~~lp~~l~~~g-~~v~v~~P~y 47 (485)
T PRK14099 26 AGALPAALKAHG-VEVRTLVPGY 47 (485)
T ss_pred HHHHHHHHHHCC-CcEEEEeCCC
Confidence 578999999999 8999999955
No 75
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=33.05 E-value=98 Score=30.73 Aligned_cols=103 Identities=18% Similarity=0.153 Sum_probs=55.1
Q ss_pred cHHHHHHHHHhcCCCeEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEec-CChHHHHHHHHhcccCCCCCCcEE
Q 024878 81 GLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVS-GTPVDCVSLALSGALFSWSKPLLV 159 (261)
Q Consensus 81 Gi~aL~~aL~~~G~~~V~VvAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~y~V~-GTPaDCV~laL~~~l~~~~~PDLV 159 (261)
.-...+++|.++| .||+++ .++-+|+.++.+.++--+-.+++..+..=+ .|+.++ ..++.- ..|.|
T Consensus 153 ~~~~~v~~lv~aG-vDvI~i-----D~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a-~~l~~a------GaD~I 219 (404)
T PRK06843 153 DTIERVEELVKAH-VDILVI-----DSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAA-LDLISV------GADCL 219 (404)
T ss_pred HHHHHHHHHHhcC-CCEEEE-----ECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHH-HHHHHc------CCCEE
Confidence 3457889999999 688887 222255544433331111122233333434 444444 444431 47999
Q ss_pred EecCCCCCCCCCcccc-cc--hHHHHH---HHH-HcCCCeeEEe
Q 024878 160 ISGINRGSSCGHHMFY-SG--VVAGAR---EAL-ICGVPSLSIS 196 (261)
Q Consensus 160 ISGIN~G~N~G~~v~y-SG--TVgAA~---EA~-~~GIPAIAvS 196 (261)
..|+-.|..|+.-... .| ++.+-. +.+ -.++|.||=.
T Consensus 220 ~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdG 263 (404)
T PRK06843 220 KVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADG 263 (404)
T ss_pred EECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeC
Confidence 8899888876664332 23 333322 222 3578988643
No 76
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=32.97 E-value=48 Score=29.76 Aligned_cols=33 Identities=33% Similarity=0.328 Sum_probs=24.0
Q ss_pred CCCCcEEEecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEEeecc
Q 024878 153 WSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNW 199 (261)
Q Consensus 153 ~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAvS~~~ 199 (261)
..+||||||=.-.- +++.|...|||+|.++...
T Consensus 92 ~~~pDlVIsD~~~~--------------~~~aa~~~giP~i~i~~~~ 124 (318)
T PF13528_consen 92 EFRPDLVISDFYPL--------------AALAARRAGIPVIVISNQY 124 (318)
T ss_pred hcCCCEEEEcChHH--------------HHHHHHhcCCCEEEEEehH
Confidence 35899999953221 4466678999999998653
No 77
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=32.88 E-value=64 Score=30.25 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=21.8
Q ss_pred CCccHHHHHHHHHhcCCCeEEEEeeCC
Q 024878 78 ESPGLVYLVEALVREGLYNVHVCAPQS 104 (261)
Q Consensus 78 ~SpGi~aL~~aL~~~G~~~V~VvAP~~ 104 (261)
.+--+..|+++|.+.| |+|+|+.|..
T Consensus 16 ~e~~~~~la~~L~~~G-~~V~v~~~~~ 41 (398)
T cd03796 16 VETHIYQLSQCLIKRG-HKVVVITHAY 41 (398)
T ss_pred HHHHHHHHHHHHHHcC-CeeEEEeccC
Confidence 3445889999999999 8999999864
No 78
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=32.45 E-value=73 Score=25.80 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=23.3
Q ss_pred CCeEEEecCCCCCCccHHHHHHHHHh-cCCCeEEEEee
Q 024878 66 KPVLLVTNGDGIESPGLVYLVEALVR-EGLYNVHVCAP 102 (261)
Q Consensus 66 ~~~ILlTNDDGi~SpGi~aL~~aL~~-~G~~~V~VvAP 102 (261)
+.-||+| ||....+...+++.|++ .| ..|+.|+-
T Consensus 105 ~~villT--DG~~~~~~~~~~~~l~~~~~-v~v~~vg~ 139 (163)
T cd01476 105 KVVVVLT--DGRSHDDPEKQARILRAVPN-IETFAVGT 139 (163)
T ss_pred eEEEEEC--CCCCCCchHHHHHHHhhcCC-CEEEEEEC
Confidence 4457777 57666677888888888 65 45665543
No 79
>PLN00414 glycosyltransferase family protein
Probab=32.43 E-value=1.4e+02 Score=29.71 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcCCCeEEEEeeCCCCcc
Q 024878 82 LVYLVEALVREGLYNVHVCAPQSDKSV 108 (261)
Q Consensus 82 i~aL~~aL~~~G~~~V~VvAP~~~qSg 108 (261)
+..|++.|...| ++|+++.+....+-
T Consensus 21 mL~LAk~Las~G-~~VT~vtt~~~~~~ 46 (446)
T PLN00414 21 YLHLANKLAEKG-HRVTFFLPKKAHKQ 46 (446)
T ss_pred HHHHHHHHHhCC-CEEEEEeCCchhhh
Confidence 567889999999 79999998876543
No 80
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=32.43 E-value=44 Score=32.63 Aligned_cols=55 Identities=24% Similarity=0.273 Sum_probs=36.7
Q ss_pred CChHHHHHHHHhcccCCCCCCcEEEecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEE
Q 024878 136 GTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSI 195 (261)
Q Consensus 136 GTPaDCV~laL~~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAv 195 (261)
--+=.+..-=+. ++ +..+||+||.|+- .|.|..=.-.|+|+.|..- ..|||+|+-
T Consensus 63 en~eea~~~i~~-mv-~~~~pD~viaGPa--FnagrYG~acg~v~~aV~e-~~~IP~vta 117 (349)
T PF07355_consen 63 ENKEEALKKILE-MV-KKLKPDVVIAGPA--FNAGRYGVACGEVAKAVQE-KLGIPVVTA 117 (349)
T ss_pred hCHHHHHHHHHH-HH-HhcCCCEEEEcCC--cCCchHHHHHHHHHHHHHH-hhCCCEEEE
Confidence 334444443333 33 3468999999985 4778776677888877654 469999953
No 81
>PF01205 UPF0029: Uncharacterized protein family UPF0029; InterPro: IPR001498 The Impact protein is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. This entry represents the N-terminal domain of the Impact proteins.; PDB: 1VI7_A 2CVE_A.
Probab=32.23 E-value=58 Score=26.47 Aligned_cols=32 Identities=34% Similarity=0.367 Sum_probs=24.4
Q ss_pred EEEecCCCCCC--ccHHHHHHHHHhcCCCeEEEEe
Q 024878 69 LLVTNGDGIES--PGLVYLVEALVREGLYNVHVCA 101 (261)
Q Consensus 69 ILlTNDDGi~S--pGi~aL~~aL~~~G~~~V~VvA 101 (261)
+-=.+|||--+ .|...| +.|+..+..+|.||.
T Consensus 50 ~~~~~DDGEp~gtAG~piL-~~L~~~~l~nv~VVV 83 (110)
T PF01205_consen 50 IEGFSDDGEPGGTAGKPIL-EVLEHNGLTNVLVVV 83 (110)
T ss_dssp EEEEE-TTSSTTSSCHHHH-HHHHHCTB-SEEEEE
T ss_pred eecccCCCCCCCCccHHHH-HHHHhCCcCCEEEEE
Confidence 44568999988 999888 889998888887663
No 82
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=31.87 E-value=1e+02 Score=30.72 Aligned_cols=59 Identities=24% Similarity=0.252 Sum_probs=42.1
Q ss_pred CChhhhhhHHHHHHhccCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCcccCCCCCCeEEEecCCCC-CCccHHHHHH
Q 024878 9 MPPGLVSNLEQVLLNKKKKSKDNDDDGDDGTSKQSNEEANESTEPSTSDSTENVDSSKPVLLVTNGDGI-ESPGLVYLVE 87 (261)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILlTNDDGi-~SpGi~aL~~ 87 (261)
|=-.++|-|++||..|-..+++ + +.+. .|.|+-|| ...|..+|+.
T Consensus 188 LY~~~~s~La~v~~~~~~~n~~--------a-----------------------r~sG---~iInT~g~i~~egy~~llh 233 (415)
T KOG2749|consen 188 LYKALVSELAEVLKQRLSLNPE--------A-----------------------RVSG---CIINTCGWIEGEGYAALLH 233 (415)
T ss_pred HHHHHHHHHHHHHHHHhccCch--------h-----------------------cccc---eEEeccceeccccHHHHHH
Confidence 4467899999999888754332 0 1222 35688898 6679999999
Q ss_pred HHHhcCCCeEEEEee
Q 024878 88 ALVREGLYNVHVCAP 102 (261)
Q Consensus 88 aL~~~G~~~V~VvAP 102 (261)
+.++.. .+|+||-=
T Consensus 234 ai~~f~-v~vviVLg 247 (415)
T KOG2749|consen 234 AIKAFE-VDVVIVLG 247 (415)
T ss_pred HHHHcC-ccEEEEec
Confidence 999887 56666653
No 83
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=30.16 E-value=59 Score=29.32 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=17.3
Q ss_pred ccchHHHHHHHHHcCCCeeEEee
Q 024878 175 YSGVVAGAREALICGVPSLSISL 197 (261)
Q Consensus 175 ySGTVgAA~EA~~~GIPAIAvS~ 197 (261)
.||+ ...+||+.+|+|.|++..
T Consensus 257 ~~g~-~~l~Ea~~~g~Pvv~~~~ 278 (348)
T TIGR01133 257 RAGA-STVAELAAAGVPAILIPY 278 (348)
T ss_pred CCCh-hHHHHHHHcCCCEEEeeC
Confidence 4663 367799999999999854
No 84
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=29.73 E-value=3.6e+02 Score=23.33 Aligned_cols=75 Identities=13% Similarity=0.219 Sum_probs=45.0
Q ss_pred CCCeEEEecCCCCCCccH-HHHHHHHHhcCCCeEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHH
Q 024878 65 SKPVLLVTNGDGIESPGL-VYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVS 143 (261)
Q Consensus 65 ~~~~ILlTNDDGi~SpGi-~aL~~aL~~~G~~~V~VvAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~y~V~GTPaDCV~ 143 (261)
+...||||--. -|| +++++.|.+.| ++|+++....+.-. . .....+.+|=+-.+++.
T Consensus 8 ~~k~vlItG~s----~gIG~~la~~l~~~G-~~v~~~~~~~~~~~--------~---------~~~~~~~~D~~~~~~~~ 65 (266)
T PRK06171 8 QGKIIIVTGGS----SGIGLAIVKELLANG-ANVVNADIHGGDGQ--------H---------ENYQFVPTDVSSAEEVN 65 (266)
T ss_pred CCCEEEEeCCC----ChHHHHHHHHHHHCC-CEEEEEeCCccccc--------c---------CceEEEEccCCCHHHHH
Confidence 34579999533 366 67889999999 78988764432210 0 01224556655556666
Q ss_pred HHHhcccCCCCCCcEEEe
Q 024878 144 LALSGALFSWSKPLLVIS 161 (261)
Q Consensus 144 laL~~~l~~~~~PDLVIS 161 (261)
-.+..+.....++|.||.
T Consensus 66 ~~~~~~~~~~g~id~li~ 83 (266)
T PRK06171 66 HTVAEIIEKFGRIDGLVN 83 (266)
T ss_pred HHHHHHHHHcCCCCEEEE
Confidence 665544322346898886
No 85
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=29.60 E-value=56 Score=31.65 Aligned_cols=24 Identities=29% Similarity=0.236 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcCCCeEEEEeeCCCC
Q 024878 82 LVYLVEALVREGLYNVHVCAPQSDK 106 (261)
Q Consensus 82 i~aL~~aL~~~G~~~V~VvAP~~~q 106 (261)
...|.++|++.| |+|.|+.|.-.+
T Consensus 23 v~~L~~aL~~~G-~~v~v~~p~y~~ 46 (473)
T TIGR02095 23 VGALPKALAALG-HDVRVLLPAYGC 46 (473)
T ss_pred HHHHHHHHHHcC-CeEEEEecCCcC
Confidence 488999999999 899999997764
No 86
>PRK12342 hypothetical protein; Provisional
Probab=29.30 E-value=1.3e+02 Score=27.91 Aligned_cols=54 Identities=15% Similarity=0.014 Sum_probs=34.4
Q ss_pred CChHHHHHHHHhcccCCCCCCcEEEecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEEee
Q 024878 136 GTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISL 197 (261)
Q Consensus 136 GTPaDCV~laL~~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAvS~ 197 (261)
|.-.-.+..+|...+.+ ..||||+.|-- ..=.++|-||+.. |.+.|+|.|..-.
T Consensus 91 g~D~~ata~~La~~i~~-~~~DLVl~G~~------s~D~~tgqvg~~l-A~~Lg~P~vt~v~ 144 (254)
T PRK12342 91 HALPLDTAKALAAAIEK-IGFDLLLFGEG------SGDLYAQQVGLLL-GELLQLPVINAVS 144 (254)
T ss_pred CCCHHHHHHHHHHHHHH-hCCCEEEEcCC------cccCCCCCHHHHH-HHHhCCCcEeeEE
Confidence 44444455566554432 35999999921 1235678888765 5578999887653
No 87
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=29.14 E-value=50 Score=33.21 Aligned_cols=37 Identities=27% Similarity=0.231 Sum_probs=29.1
Q ss_pred eEEEe-c-CCCCCCccHHHHHHHHHhcCCCeEEEEeeCCC
Q 024878 68 VLLVT-N-GDGIESPGLVYLVEALVREGLYNVHVCAPQSD 105 (261)
Q Consensus 68 ~ILlT-N-DDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~~ 105 (261)
+||+. . -.+=+--.++.++++|.+.| |+|+|+.|...
T Consensus 22 kIl~~~P~~~~SH~~~~~~l~~~La~rG-H~VTvi~p~~~ 60 (507)
T PHA03392 22 RILAVFPTPAYSHHSVFKVYVEALAERG-HNVTVIKPTLR 60 (507)
T ss_pred cEEEEcCCCCCcHHHHHHHHHHHHHHcC-CeEEEEecccc
Confidence 48755 3 34446668999999999999 99999999753
No 88
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=29.01 E-value=2.3e+02 Score=25.54 Aligned_cols=50 Identities=18% Similarity=0.025 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCCeeEEeeccc-CCCCCCccHH----HHHHHHHHHHHHHHHHhh
Q 024878 179 VAGAREALICGVPSLSISLNWK-KDESQESDFK----DAVSVCLPLINAATRDIG 228 (261)
Q Consensus 179 VgAA~EA~~~GIPAIAvS~~~~-~~~~~~~d~~----~aa~~~~~li~~l~~~~~ 228 (261)
-+.|.-+..+|+|.+++=.=.+ -++....+|+ .|++.+.+++.++++.++
T Consensus 175 aAvA~vc~~~~vP~l~IR~ISD~a~~~~~~~~~~f~~~aa~~sa~~~~~~l~~~~ 229 (236)
T PRK06714 175 AAFAYVCQINKKPFLCLKAASDQANDKTKEEQKIFKMLACERACEHLIAFLRVYE 229 (236)
T ss_pred HHHHHHHHHhCCCEEEEEEeccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3555667789999998732111 1122233454 466677777777776543
No 89
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=28.75 E-value=5.2e+02 Score=26.03 Aligned_cols=32 Identities=25% Similarity=0.209 Sum_probs=21.8
Q ss_pred CeEEEecCCCCCCcc-HHHHHHHHHhc--CCCeEEEEeeCCC
Q 024878 67 PVLLVTNGDGIESPG-LVYLVEALVRE--GLYNVHVCAPQSD 105 (261)
Q Consensus 67 ~~ILlTNDDGi~SpG-i~aL~~aL~~~--G~~~V~VvAP~~~ 105 (261)
|+|||. .+-| -++|+.+|++. | ++|+++ |-..
T Consensus 1 mkVLvi-----G~Ggrehal~~~l~~s~~g-~~v~~~-~g~~ 35 (486)
T PRK05784 1 MKVLLV-----GDGAREHALAEALEKSTKG-YKVYAL-SSYL 35 (486)
T ss_pred CEEEEE-----CCchhHHHHHHHHHhCCCC-CEEEEE-ECCC
Confidence 688885 3334 57888889887 6 577666 6533
No 90
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=28.71 E-value=1.3e+02 Score=27.77 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=35.4
Q ss_pred CChHHHHHHHHhcccCCCCCCcEEEecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEEeec
Q 024878 136 GTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLN 198 (261)
Q Consensus 136 GTPaDCV~laL~~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAvS~~ 198 (261)
|.-.-.+...|...+.+ ..||||+.|- ...=.++|-||+.+ |.+.|+|.|..-..
T Consensus 94 g~D~~~tA~~La~ai~~-~~~DLVl~G~------~s~D~~tgqvg~~l-Ae~Lg~P~vt~v~~ 148 (256)
T PRK03359 94 QALPQQTASALAAAAQK-AGFDLILCGD------GSSDLYAQQVGLLV-GEILNIPAINGVSK 148 (256)
T ss_pred CcCHHHHHHHHHHHHHH-hCCCEEEEcC------ccccCCCCcHHHHH-HHHhCCCceeeEEE
Confidence 44444555556554433 3599999992 22234788888866 55789999876544
No 91
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=28.24 E-value=65 Score=29.71 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=14.9
Q ss_pred cchHHHHHHHHHcCCCeeEE
Q 024878 176 SGVVAGAREALICGVPSLSI 195 (261)
Q Consensus 176 SGTVgAA~EA~~~GIPAIAv 195 (261)
||| +.+||+.+|+|.|.+
T Consensus 269 sG~--~~lEa~a~G~PvI~~ 286 (380)
T PRK00025 269 SGT--VTLELALLKVPMVVG 286 (380)
T ss_pred ccH--HHHHHHHhCCCEEEE
Confidence 576 345999999999987
No 92
>PRK11568 hypothetical protein; Provisional
Probab=28.09 E-value=74 Score=28.59 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=23.7
Q ss_pred ecCCCCC--CccHHHHHHHHHhcCCCeEEEE
Q 024878 72 TNGDGIE--SPGLVYLVEALVREGLYNVHVC 100 (261)
Q Consensus 72 TNDDGi~--SpGi~aL~~aL~~~G~~~V~Vv 100 (261)
.||||-- +.|...| +.|+..++.+|.||
T Consensus 69 ~sDDGEPsGTAG~PiL-~vL~~~~l~nv~vV 98 (204)
T PRK11568 69 FSDDGEPAGTAGKPML-AQLMGSGVGEITAV 98 (204)
T ss_pred CCCCCCCCCCchHHHH-HHHHHCCCccEEEE
Confidence 7899994 4999888 77999998888776
No 93
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=28.03 E-value=77 Score=28.92 Aligned_cols=29 Identities=34% Similarity=0.503 Sum_probs=23.1
Q ss_pred CCcEEEecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEEeec
Q 024878 155 KPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLN 198 (261)
Q Consensus 155 ~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAvS~~ 198 (261)
.-||+||. .| +-.+|++.+|+|+|.+...
T Consensus 241 ~aDl~Is~-------------~G--~T~~E~~a~g~P~i~i~~~ 269 (279)
T TIGR03590 241 EADLAIGA-------------AG--STSWERCCLGLPSLAICLA 269 (279)
T ss_pred HCCEEEEC-------------Cc--hHHHHHHHcCCCEEEEEec
Confidence 46888884 44 3478999999999999874
No 94
>PF10841 DUF2644: Protein of unknown function (DUF2644); InterPro: IPR020300 This entry is represented by Bacteriophage PY100, Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains membrane proteins with no known function.
Probab=27.30 E-value=24 Score=26.17 Aligned_cols=24 Identities=42% Similarity=0.587 Sum_probs=14.4
Q ss_pred EEecCCCCCCc-cHHHHHHHHHhcC
Q 024878 70 LVTNGDGIESP-GLVYLVEALVREG 93 (261)
Q Consensus 70 LlTNDDGi~Sp-Gi~aL~~aL~~~G 93 (261)
||||+||--|- +.--+.-+|.-.|
T Consensus 3 LiTN~dGrLSTT~~iQffg~lv~ag 27 (60)
T PF10841_consen 3 LITNADGRLSTTAFIQFFGALVMAG 27 (60)
T ss_pred cccCCCCcEehHHHHHHHHHHHHHH
Confidence 89999998653 3444444444433
No 95
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=26.88 E-value=81 Score=29.48 Aligned_cols=37 Identities=32% Similarity=0.470 Sum_probs=29.9
Q ss_pred CCCCeEEEecCCCCCCccH-HHHHHHHHhcCCCeEEEEeeCCC
Q 024878 64 SSKPVLLVTNGDGIESPGL-VYLVEALVREGLYNVHVCAPQSD 105 (261)
Q Consensus 64 ~~~~~ILlTNDDGi~SpGi-~aL~~aL~~~G~~~V~VvAP~~~ 105 (261)
+++.++||| =.|.|| +++++.|.+.| ++|++||-..+
T Consensus 4 ~~~~~~lIT----GASsGIG~~~A~~lA~~g-~~liLvaR~~~ 41 (265)
T COG0300 4 MKGKTALIT----GASSGIGAELAKQLARRG-YNLILVARRED 41 (265)
T ss_pred CCCcEEEEE----CCCchHHHHHHHHHHHCC-CEEEEEeCcHH
Confidence 456679999 356677 78999999999 89999998764
No 96
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=26.84 E-value=1e+02 Score=27.81 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=25.2
Q ss_pred CCCCCccHHHHHHHHHhcCCCeEEEEeeCCC
Q 024878 75 DGIESPGLVYLVEALVREGLYNVHVCAPQSD 105 (261)
Q Consensus 75 DGi~SpGi~aL~~aL~~~G~~~V~VvAP~~~ 105 (261)
+|+.-.=+..-++.|+++| ++|.++.|...
T Consensus 21 tG~~~~El~~p~~~l~~aG-~~V~~aS~~g~ 50 (232)
T cd03148 21 TGNHPVEMLLPLYHLHAAG-FDFDVATLSGL 50 (232)
T ss_pred CCCcHHHHHHHHHHHHHCC-CEEEEEeCCCC
Confidence 6666677888899999999 79999999653
No 97
>PRK06398 aldose dehydrogenase; Validated
Probab=26.06 E-value=4.4e+02 Score=22.96 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=41.6
Q ss_pred CCCeEEEecCCCCCCccH-HHHHHHHHhcCCCeEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHH
Q 024878 65 SKPVLLVTNGDGIESPGL-VYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVS 143 (261)
Q Consensus 65 ~~~~ILlTNDDGi~SpGi-~aL~~aL~~~G~~~V~VvAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~y~V~GTPaDCV~ 143 (261)
+..+||||-- +-|| +++++.|.+.| ++|+++.-..... . . ...+.+|=+-.+.+.
T Consensus 5 ~gk~vlItGa----s~gIG~~ia~~l~~~G-~~Vi~~~r~~~~~---------~--~--------~~~~~~D~~~~~~i~ 60 (258)
T PRK06398 5 KDKVAIVTGG----SQGIGKAVVNRLKEEG-SNVINFDIKEPSY---------N--D--------VDYFKVDVSNKEQVI 60 (258)
T ss_pred CCCEEEEECC----CchHHHHHHHHHHHCC-CeEEEEeCCcccc---------C--c--------eEEEEccCCCHHHHH
Confidence 3457999953 3355 67888999999 7888775332110 0 1 123445544444555
Q ss_pred HHHhcccCCCCCCcEEEe
Q 024878 144 LALSGALFSWSKPLLVIS 161 (261)
Q Consensus 144 laL~~~l~~~~~PDLVIS 161 (261)
-++..+.....++|.+|.
T Consensus 61 ~~~~~~~~~~~~id~li~ 78 (258)
T PRK06398 61 KGIDYVISKYGRIDILVN 78 (258)
T ss_pred HHHHHHHHHcCCCCEEEE
Confidence 555543222346899986
No 98
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=25.90 E-value=3.4e+02 Score=26.93 Aligned_cols=43 Identities=26% Similarity=0.295 Sum_probs=33.4
Q ss_pred CCCcEEEecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEEeec
Q 024878 154 SKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLN 198 (261)
Q Consensus 154 ~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAvS~~ 198 (261)
..-||||.| .|.+-...++=-=++|-|..|--+++|.||+--.
T Consensus 283 ~daDLVITG--EGr~D~Qs~~GK~pigVA~~Akk~~vPvIaiaGs 325 (378)
T COG1929 283 KDADLVITG--EGRIDSQSLHGKTPIGVAKLAKKYGVPVIAIAGS 325 (378)
T ss_pred ccCCEEEeC--CCcccccccCCccchHHHHhhhhhCCCEEEEecc
Confidence 467999998 5666655555455679999999999999999543
No 99
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=25.84 E-value=97 Score=25.34 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=26.0
Q ss_pred CCCCCCccHHHHHHHHHhcCCCeEEEEeeCCC
Q 024878 74 GDGIESPGLVYLVEALVREGLYNVHVCAPQSD 105 (261)
Q Consensus 74 DDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~~ 105 (261)
-||+..-.+...++.|++.| ++|.++.|...
T Consensus 7 ~~g~~~~e~~~~~~~l~~ag-~~v~~vs~~~~ 37 (166)
T TIGR01382 7 TDEFEDSELLYPLDRLREAG-HEVDTVSKEAG 37 (166)
T ss_pred cCCchHHHHHHHHHHHHHCC-CEEEEEecCCC
Confidence 57788888999999999998 79999987653
No 100
>TIGR00257 IMPACT_YIGZ uncharacterized protein, YigZ family. This uncharacterized protein family includes YigZ, which has been crystallized, from E. coli. YigZ is homologous to the protein product of the mouse IMPACT gene. Crystallography shows a two-domain stucture, and the C-terminal domain is suggested to bind nucleic acids. The function is unknown. Note that the ortholog from E. coli was shown fused to the pepQ gene in GenBank entry X54687. This caused occasional misidentification of this protein as pepQ; this family is found in a number of species that lack pepQ.
Probab=25.25 E-value=90 Score=28.04 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=23.5
Q ss_pred ecCCCCC--CccHHHHHHHHHhcCCCeEEEE
Q 024878 72 TNGDGIE--SPGLVYLVEALVREGLYNVHVC 100 (261)
Q Consensus 72 TNDDGi~--SpGi~aL~~aL~~~G~~~V~Vv 100 (261)
.||||-- +.|...| ++|+..++.+|.||
T Consensus 69 ~sDDGEPsGTAG~PiL-~vL~~~~l~nv~vV 98 (204)
T TIGR00257 69 FSDDGEPAGTAGKPML-SVLRGSDLGDIGAV 98 (204)
T ss_pred CCCCCCCCCCchHHHH-HHHHHCCCCcEEEE
Confidence 6899995 4898888 77999998888776
No 101
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=24.84 E-value=1.8e+02 Score=29.40 Aligned_cols=102 Identities=18% Similarity=0.163 Sum_probs=58.4
Q ss_pred cHHHHHHHHHhcCCCeEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecC-ChHHHHHHHHhcccCCCCCCcEE
Q 024878 81 GLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSG-TPVDCVSLALSGALFSWSKPLLV 159 (261)
Q Consensus 81 Gi~aL~~aL~~~G~~~V~VvAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~y~V~G-TPaDCV~laL~~~l~~~~~PDLV 159 (261)
-+..++++|.+.| .+++++=... ||+..+.+-++--+-.+.+..+.+=++ |+..+.. .+. -..|.|
T Consensus 225 ~~~~ra~~Lv~aG-Vd~i~~D~a~-----g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~-l~~------~G~d~i 291 (475)
T TIGR01303 225 DVGGKAKALLDAG-VDVLVIDTAH-----GHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRD-LLE------AGANII 291 (475)
T ss_pred cHHHHHHHHHHhC-CCEEEEeCCC-----CCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHH-HHH------hCCCEE
Confidence 4567888888888 5776663322 454333222111010112344444333 4444433 332 147999
Q ss_pred EecCCCCCCCCCccccc---chHHHHHHH----HHcCCCeeEE
Q 024878 160 ISGINRGSSCGHHMFYS---GVVAGAREA----LICGVPSLSI 195 (261)
Q Consensus 160 ISGIN~G~N~G~~v~yS---GTVgAA~EA----~~~GIPAIAv 195 (261)
--|+--|.+|.+-.++- -|+.|-+++ ..+|+|.||=
T Consensus 292 ~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viad 334 (475)
T TIGR01303 292 KVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWAD 334 (475)
T ss_pred EECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEe
Confidence 99999999997764432 367766665 4569999874
No 102
>TIGR00182 plsX fatty acid/phospholipid synthesis protein PlsX. This protein of fatty acid/phospholipid biosynthesis, called PlsX after the member in Streptococcus pneumoniae, is proposed to be a phosphate acyltransferase that partners with PlsY (TIGR00023) in a two-step 1-acylglycerol-3-phosphate biosynthesis pathway alternative to the one-step PlsB (EC 2.3.1.15) pathway.
Probab=24.60 E-value=6.2e+02 Score=24.17 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCCeEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHH--------HHHHHhcccCCC
Q 024878 82 LVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDC--------VSLALSGALFSW 153 (261)
Q Consensus 82 i~aL~~aL~~~G~~~V~VvAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~y~V~GTPaDC--------V~laL~~~l~~~ 153 (261)
+.+..+++++.+..++++|.+..+-.-.-... ...+++... .+...-+-.|..+ +.+|+.. + +.
T Consensus 10 v~aa~~a~~~~~~~~~iLvGd~~~I~~~l~~~--~~~i~Ii~a----~~~i~m~e~p~~alR~kk~ss~~~A~~l-V-k~ 81 (322)
T TIGR00182 10 IDGVLKYASANQDLHIILVGDKDAIEPHLDKL--PKNITIIHA----QSVIEMTDTPVRAIRRKVNSSMQLAMNL-V-KE 81 (322)
T ss_pred HHHHHHHHHhCCCceEEEEcCHHHHHHHHHhC--CCCcEEECC----CCccccCcchHHHHHhcCCCHHHHHHHH-H-HC
Confidence 66777778877766888888765211000000 011222221 1112222366666 5677763 3 34
Q ss_pred CCCcEEEec
Q 024878 154 SKPLLVISG 162 (261)
Q Consensus 154 ~~PDLVISG 162 (261)
.+-|.+|||
T Consensus 82 G~ADa~VSg 90 (322)
T TIGR00182 82 GRADAVISA 90 (322)
T ss_pred CCCCEEEeC
Confidence 689999999
No 103
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=24.60 E-value=1.2e+02 Score=27.97 Aligned_cols=67 Identities=15% Similarity=0.187 Sum_probs=42.5
Q ss_pred eEEEecCCCCCCc-cHHHHHHHHHhcCCCeEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHHHHH
Q 024878 68 VLLVTNGDGIESP-GLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLAL 146 (261)
Q Consensus 68 ~ILlTNDDGi~Sp-Gi~aL~~aL~~~G~~~V~VvAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~y~V~GTPaDCV~laL 146 (261)
.|+|+ |||+..- -+++-.+++++.+-.+|+|..|-..++.+-.- +...++++++ -+|.+-..++.
T Consensus 126 ~VIlV-DDGiATGatm~aAi~~~r~~~~~~IviAVPV~p~~a~~~l------------~s~~D~vvc~-~~P~~F~AVg~ 191 (220)
T COG1926 126 TVILV-DDGIATGATMKAAVRALRAKGPKEIVIAVPVAPEDAAAEL------------ESEADEVVCL-YMPAPFEAVGE 191 (220)
T ss_pred EEEEE-eCCcchhHHHHHHHHHHHhcCCceEEEEcccCCHHHHHHH------------HhhcCeEEEE-cCCccHHHHHH
Confidence 35555 9999753 35677788888887899999998777665431 1122333433 46777555555
Q ss_pred hc
Q 024878 147 SG 148 (261)
Q Consensus 147 ~~ 148 (261)
++
T Consensus 192 ~Y 193 (220)
T COG1926 192 FY 193 (220)
T ss_pred HH
Confidence 43
No 104
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=24.43 E-value=1.1e+02 Score=26.02 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=22.7
Q ss_pred ccHHHHHHHHHhcCCCeEEEEeeCCCCcc
Q 024878 80 PGLVYLVEALVREGLYNVHVCAPQSDKSV 108 (261)
Q Consensus 80 pGi~aL~~aL~~~G~~~V~VvAP~~~qSg 108 (261)
.-+..|+++|.+.| |+|.++.+.....-
T Consensus 18 ~~~~~l~~~L~~~g-~~v~i~~~~~~~~~ 45 (374)
T cd03801 18 RHVLELARALAARG-HEVTVLTPGDGGLP 45 (374)
T ss_pred HHHHHHHHHHHhcC-ceEEEEecCCCCCC
Confidence 44788999999888 89999999876543
No 105
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=24.41 E-value=1.2e+02 Score=24.77 Aligned_cols=29 Identities=34% Similarity=0.519 Sum_probs=26.9
Q ss_pred CCCCCCccHHHHHHHHHhcCCCeEEEEeeC
Q 024878 74 GDGIESPGLVYLVEALVREGLYNVHVCAPQ 103 (261)
Q Consensus 74 DDGi~SpGi~aL~~aL~~~G~~~V~VvAP~ 103 (261)
-||+.-..+..+++.|+..| ++|.+++|.
T Consensus 7 ~~gf~~~e~~~~~~~l~~a~-~~v~~vs~~ 35 (165)
T cd03134 7 ADGFEDVELTYPLYRLREAG-AEVVVAGPE 35 (165)
T ss_pred CCCchHHHHHHHHHHHHHCC-CEEEEEccC
Confidence 78999999999999999998 799999998
No 106
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=24.31 E-value=29 Score=33.70 Aligned_cols=35 Identities=29% Similarity=0.179 Sum_probs=21.8
Q ss_pred EEEecCCCCCCccHHHHHHHHHhcCCCeEEEEeeCC
Q 024878 69 LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQS 104 (261)
Q Consensus 69 ILlTNDDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~ 104 (261)
|||..-.+=+.--++.|.++|.+.| |+|+|+.|..
T Consensus 3 vLv~p~~~SH~~~~~~l~~~L~~rG-H~VTvl~~~~ 37 (500)
T PF00201_consen 3 VLVFPMAYSHFIFMRPLAEELAERG-HNVTVLTPSP 37 (500)
T ss_dssp ---------SHHHHHHHHHHHHHH--TTSEEEHHHH
T ss_pred EEEeCCCcCHHHHHHHHHHHHHhcC-CceEEEEeec
Confidence 4555443445556899999999999 9999999965
No 107
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=24.10 E-value=93 Score=27.02 Aligned_cols=27 Identities=30% Similarity=0.254 Sum_probs=22.3
Q ss_pred cHHHHHHHHHhcCCCeEEEEeeCCCCcc
Q 024878 81 GLVYLVEALVREGLYNVHVCAPQSDKSV 108 (261)
Q Consensus 81 Gi~aL~~aL~~~G~~~V~VvAP~~~qSg 108 (261)
-+..|+++|.+.| |+|+|+++......
T Consensus 20 ~~~~l~~~L~~~g-~~v~v~~~~~~~~~ 46 (359)
T cd03823 20 VAHDLAEALAKRG-HEVAVLTAGEDPPR 46 (359)
T ss_pred HHHHHHHHHHhcC-CceEEEeCCCCCCC
Confidence 3677999999999 89999999876543
No 108
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=24.04 E-value=68 Score=27.02 Aligned_cols=22 Identities=41% Similarity=0.475 Sum_probs=17.1
Q ss_pred chHHHHHHHHHcCCCeeEEeec
Q 024878 177 GVVAGAREALICGVPSLSISLN 198 (261)
Q Consensus 177 GTVgAA~EA~~~GIPAIAvS~~ 198 (261)
+-+=+++-|+.+|+|+|+++.+
T Consensus 264 ~RlH~~I~a~~~g~P~i~i~y~ 285 (286)
T PF04230_consen 264 MRLHGAILALSLGVPVIAISYD 285 (286)
T ss_pred cCCHHHHHHHHcCCCEEEEecC
Confidence 3444677889999999999864
No 109
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=23.96 E-value=1.9e+02 Score=29.45 Aligned_cols=67 Identities=21% Similarity=0.284 Sum_probs=43.3
Q ss_pred ccHHHHHHHHHhcCCCeEEEEee--CCCCcccccccCCCCceEEEEeeeCC-ceeEEecCChH----HHHHHHHhcccCC
Q 024878 80 PGLVYLVEALVREGLYNVHVCAP--QSDKSVSGHSVTLRETIAVSSAEING-ATAYEVSGTPV----DCVSLALSGALFS 152 (261)
Q Consensus 80 pGi~aL~~aL~~~G~~~V~VvAP--~~~qSg~g~siT~~~pl~v~~v~~~g-~~~y~V~GTPa----DCV~laL~~~l~~ 152 (261)
+--..|++.|++.| .+|.++.. -+-|--.-.++-- .| .++|+..|-.- .|+.-+|+. +.
T Consensus 56 ~~Ta~l~~tL~~~G-A~v~~~~~n~~stqD~~aaal~~-----------~g~i~vfa~~g~t~eey~~~~~~~l~~--~~ 121 (476)
T PTZ00075 56 VQTAVLIETLKALG-AEVRWCSCNIFSTQDHAAAAIAK-----------AGSVPVFAWKGETLEEYWWCTEQALKW--PN 121 (476)
T ss_pred HHHHHHHHHHHHcC-CEEEEEcCCCCccccHHHHHHHh-----------cCCeEEEEecCCCHHHHHHHHHHHHhc--cC
Confidence 44568889999999 79998873 3333333333321 24 67788877544 388888874 22
Q ss_pred CCCCcEEE
Q 024878 153 WSKPLLVI 160 (261)
Q Consensus 153 ~~~PDLVI 160 (261)
..+||++|
T Consensus 122 ~~~p~~i~ 129 (476)
T PTZ00075 122 GDGPNLIV 129 (476)
T ss_pred CCCCCEEE
Confidence 34799886
No 110
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=23.66 E-value=92 Score=28.51 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=17.6
Q ss_pred ccchHHHHHHHHHcCCCeeEEee
Q 024878 175 YSGVVAGAREALICGVPSLSISL 197 (261)
Q Consensus 175 ySGTVgAA~EA~~~GIPAIAvS~ 197 (261)
.||+ +..+||+.+|+|.|++..
T Consensus 259 ~~g~-~~~~Ea~~~g~Pvv~~~~ 280 (357)
T PRK00726 259 RAGA-STVAELAAAGLPAILVPL 280 (357)
T ss_pred CCCH-HHHHHHHHhCCCEEEecC
Confidence 4564 567899999999999864
No 111
>PRK15005 universal stress protein F; Provisional
Probab=23.54 E-value=1.7e+02 Score=22.94 Aligned_cols=34 Identities=12% Similarity=0.055 Sum_probs=24.0
Q ss_pred eeEEecCChHHHHHHHHhcccCCCCCCcEEEecCCCCCCC
Q 024878 130 TAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSC 169 (261)
Q Consensus 130 ~~y~V~GTPaDCV~laL~~~l~~~~~PDLVISGIN~G~N~ 169 (261)
+.....|.|++++.-.... .++||||-|- ++.++
T Consensus 87 ~~~v~~G~p~~~I~~~a~~-----~~~DLIV~Gs-~~~~~ 120 (144)
T PRK15005 87 HVHVEEGSPKDRILELAKK-----IPADMIIIAS-HRPDI 120 (144)
T ss_pred EEEEeCCCHHHHHHHHHHH-----cCCCEEEEeC-CCCCc
Confidence 4456789999987765442 3699999995 45443
No 112
>PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes []. It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B.
Probab=22.46 E-value=57 Score=27.38 Aligned_cols=32 Identities=25% Similarity=0.231 Sum_probs=23.5
Q ss_pred cCCCCCCccHHHHHHHHHhcCCCeEEEEeeCCC
Q 024878 73 NGDGIESPGLVYLVEALVREGLYNVHVCAPQSD 105 (261)
Q Consensus 73 NDDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~~ 105 (261)
|++.+...||..+++.+++.| |++++|.|..-
T Consensus 18 ~~~~f~~~~i~~~v~~~~~rG-~~~v~v~~~~~ 49 (155)
T PF11977_consen 18 NQKFFSVRGIQIAVEYFKSRG-HEVVVVFPPNY 49 (155)
T ss_dssp TTTSEEHHHHHHHHHHHHHTT----EEEEEEGG
T ss_pred CCCCcCHHHHHHHHHHHHHcC-CCeEEEEcchh
Confidence 344577889999999999999 78888888654
No 113
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=22.40 E-value=1.4e+02 Score=23.63 Aligned_cols=47 Identities=30% Similarity=0.400 Sum_probs=36.2
Q ss_pred CCCCeEEEecCCCC-------CCccHHHHHHHHHhcCCCeEEEEeeCCCCccccc
Q 024878 64 SSKPVLLVTNGDGI-------ESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGH 111 (261)
Q Consensus 64 ~~~~~ILlTNDDGi-------~SpGi~aL~~aL~~~G~~~V~VvAP~~~qSg~g~ 111 (261)
..++||.||=--.. ...-++.|.++|.+.+ .||++.++..+..+.++
T Consensus 38 ~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ld-vEvV~a~~~~~~~~lg~ 91 (97)
T PF06722_consen 38 PGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLD-VEVVVALPAAQRAELGE 91 (97)
T ss_dssp TSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSS-SEEEEEETTCCCGGCCS
T ss_pred CCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCC-cEEEEECCHHHHHhhCC
Confidence 67899999832211 1246889999999998 79999999998887654
No 114
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=22.26 E-value=99 Score=23.80 Aligned_cols=34 Identities=29% Similarity=0.326 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCCcc-HHHHHHHHHhcCCCeEEE
Q 024878 65 SKPVLLVTNGDGIESPG-LVYLVEALVREGLYNVHV 99 (261)
Q Consensus 65 ~~~~ILlTNDDGi~SpG-i~aL~~aL~~~G~~~V~V 99 (261)
..-+|||. ||-+++-+ ++...+.|++.|...|.+
T Consensus 87 ~gk~vliV-DDvi~tG~Tl~~~~~~L~~~g~~~v~~ 121 (125)
T PF00156_consen 87 KGKRVLIV-DDVIDTGGTLKEAIELLKEAGAKVVGV 121 (125)
T ss_dssp TTSEEEEE-EEEESSSHHHHHHHHHHHHTTBSEEEE
T ss_pred cceeEEEE-eeeEcccHHHHHHHHHHHhCCCcEEEE
Confidence 44578888 89888754 788889999999433333
No 115
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=22.16 E-value=1.2e+02 Score=29.68 Aligned_cols=43 Identities=23% Similarity=0.205 Sum_probs=38.5
Q ss_pred CCCcEEEecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEEe
Q 024878 154 SKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSIS 196 (261)
Q Consensus 154 ~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAvS 196 (261)
.+.|+||.|-..=.--|.-+.-.||..-|+-|-.+|||-+.+.
T Consensus 237 ~~Vd~VivGAd~I~~nG~v~NKiGTy~lA~~Ak~~~vPfyV~A 279 (356)
T PRK08334 237 GKVDAIIVGADRIVANGDFANKIGTYTLAVLAKEHGIPFFTVA 279 (356)
T ss_pred cCCCEEEECccEEecCCCEeehhhHHHHHHHHHHhCCCEEEEc
Confidence 4799999999887777777889999999999999999999875
No 116
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=22.15 E-value=1.3e+02 Score=29.91 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=27.6
Q ss_pred CCeEEEecCCCCCCcc-HHHHHHHHHhcCCCeEEEEee
Q 024878 66 KPVLLVTNGDGIESPG-LVYLVEALVREGLYNVHVCAP 102 (261)
Q Consensus 66 ~~~ILlTNDDGi~SpG-i~aL~~aL~~~G~~~V~VvAP 102 (261)
..+|||. ||.+.+-+ +++.++.|++.|-.+|++++-
T Consensus 340 gK~VlLV-DDvitTG~Tl~~a~~~Lr~aGA~~V~v~~~ 376 (445)
T PRK08525 340 GKRIVVI-DDSIVRGTTSKKIVSLLRAAGAKEIHLRIA 376 (445)
T ss_pred CCeEEEE-ecccCcHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 4567777 99997744 789999999999667766653
No 117
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=22.13 E-value=1.2e+02 Score=25.65 Aligned_cols=30 Identities=10% Similarity=-0.031 Sum_probs=25.4
Q ss_pred CCCeEEEecCCCCCCccHHHHHHHHHhcCC
Q 024878 65 SKPVLLVTNGDGIESPGLVYLVEALVREGL 94 (261)
Q Consensus 65 ~~~~ILlTNDDGi~SpGi~aL~~aL~~~G~ 94 (261)
+...|.||=|||+.......+.+.|++.|.
T Consensus 4 ~~k~V~LTFDDgp~~~~t~~~l~~L~~~~i 33 (191)
T TIGR02764 4 SDKKIALTFDISWGNDYTEPILDTLKEYDV 33 (191)
T ss_pred CCCEEEEEEECCCCcccHHHHHHHHHHcCC
Confidence 344699999999997778889999999885
No 118
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=21.98 E-value=3.5e+02 Score=23.52 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=26.9
Q ss_pred hHHHHHHHHHcCCCeeEEeecccC-CCCCCccHHH----HHHHHHHHHHHHHH
Q 024878 178 VVAGAREALICGVPSLSISLNWKK-DESQESDFKD----AVSVCLPLINAATR 225 (261)
Q Consensus 178 TVgAA~EA~~~GIPAIAvS~~~~~-~~~~~~d~~~----aa~~~~~li~~l~~ 225 (261)
+.+-|.-|..+|+|.++|-.-.+. +.....+|++ |++.+.+++.++++
T Consensus 175 ~aa~a~va~~~~vp~~~ir~vSd~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 227 (230)
T PRK05584 175 GAAIAQVCHEFGVPFVVVRAISDTADDEAHVSFDEFLAVAAKYSANILKRMLE 227 (230)
T ss_pred HHHHHHHHHHcCCCEEEEEEeccCCCCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556789999998542211 1122345654 55555666666654
No 119
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=21.89 E-value=2.9e+02 Score=26.13 Aligned_cols=61 Identities=21% Similarity=0.205 Sum_probs=43.5
Q ss_pred ecCChHHHHHHHHhcccCCCCCCcEEEecCCCCC--------CCCCcccccchHHHHHHHHHcCCCeeEEeecc
Q 024878 134 VSGTPVDCVSLALSGALFSWSKPLLVISGINRGS--------SCGHHMFYSGVVAGAREALICGVPSLSISLNW 199 (261)
Q Consensus 134 V~GTPaDCV~laL~~~l~~~~~PDLVISGIN~G~--------N~G~~v~ySGTVgAA~EA~~~GIPAIAvS~~~ 199 (261)
+|-|=.|+|.--+.. .+||+||.=.-+=. .....|.--|+--=|+.|...|.+-|=+|.++
T Consensus 34 ~Ditd~~~v~~~i~~-----~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDy 102 (281)
T COG1091 34 LDITDPDAVLEVIRE-----TRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDY 102 (281)
T ss_pred ccccChHHHHHHHHh-----hCCCEEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecce
Confidence 667778888877764 37999986433211 11122556778888888999999999999875
No 120
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=21.81 E-value=4.2e+02 Score=26.93 Aligned_cols=28 Identities=36% Similarity=0.516 Sum_probs=20.1
Q ss_pred CCCeEEEecCCCCCCccHHH-HHHHHHhcCCCeE
Q 024878 65 SKPVLLVTNGDGIESPGLVY-LVEALVREGLYNV 97 (261)
Q Consensus 65 ~~~~ILlTNDDGi~SpGi~a-L~~aL~~~G~~~V 97 (261)
+..+|||.-|| ++|+. |.+.|...| ++|
T Consensus 3 ~~~~iLvVDDd----~~ir~~l~~~L~~~G-~~v 31 (464)
T COG2204 3 MMARILVVDDD----PDIRELLEQALELAG-YEV 31 (464)
T ss_pred CcCCEEEEeCC----HHHHHHHHHHHHHcC-CeE
Confidence 34569999888 77876 556777777 555
No 121
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=21.58 E-value=1.7e+02 Score=25.12 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=23.9
Q ss_pred CCCeEEEecCCCCCCcc-HHHHHHHHHhcCCCeE
Q 024878 65 SKPVLLVTNGDGIESPG-LVYLVEALVREGLYNV 97 (261)
Q Consensus 65 ~~~~ILlTNDDGi~SpG-i~aL~~aL~~~G~~~V 97 (261)
..-+|||. ||.+.+-+ ++++++.|++.| .++
T Consensus 119 ~gk~VLIV-DDiitTG~Tl~aa~~~L~~~G-A~~ 150 (178)
T PRK07322 119 KGKRVAIV-DDVVSTGGTLTALERLVERAG-GQV 150 (178)
T ss_pred CCCEEEEE-eccccccHHHHHHHHHHHHcC-CEE
Confidence 34578888 99998754 788999999998 453
No 122
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=21.24 E-value=1.6e+02 Score=24.82 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=24.7
Q ss_pred CCCCeEEEecCCCCCCccHHHHHHHHHhcCCCeEEEEeeC
Q 024878 64 SSKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQ 103 (261)
Q Consensus 64 ~~~~~ILlTNDDGi~SpGi~aL~~aL~~~G~~~V~VvAP~ 103 (261)
++..+||||-..|.- | +.|++.|.+.| ++|++++-.
T Consensus 3 ~~~~~ilItGasg~i--G-~~l~~~l~~~g-~~v~~~~r~ 38 (246)
T PRK05653 3 LQGKTALVTGASRGI--G-RAIALRLAADG-AKVVIYDSN 38 (246)
T ss_pred CCCCEEEEECCCcHH--H-HHHHHHHHHCC-CEEEEEeCC
Confidence 344679999765432 1 56778888888 788887754
No 123
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=21.13 E-value=1.9e+02 Score=24.51 Aligned_cols=37 Identities=30% Similarity=0.328 Sum_probs=29.8
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCeEEEEeeCC
Q 024878 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQS 104 (261)
Q Consensus 67 ~~ILlTNDDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~ 104 (261)
+||+|-=-||++---+...++.|+++| .+|.++.+..
T Consensus 3 ~~~~il~~~g~~~~e~~~p~~~l~~ag-~~v~~~s~~~ 39 (196)
T PRK11574 3 ASALVCLAPGSEETEAVTTIDLLVRGG-IKVTTASVAS 39 (196)
T ss_pred ceEEEEeCCCcchhhHhHHHHHHHHCC-CeEEEEEccC
Confidence 345444468999889999999999998 7999998754
No 124
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=21.10 E-value=1.5e+02 Score=23.78 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=27.9
Q ss_pred CCCCCCccHHHHHHHHHhcCCCeEEEEeeCCCC
Q 024878 74 GDGIESPGLVYLVEALVREGLYNVHVCAPQSDK 106 (261)
Q Consensus 74 DDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~~q 106 (261)
-||+.--.+..+++.|+..| ++|.+++|....
T Consensus 6 ~~gf~~~e~~~~~~~~~~a~-~~v~~vs~~~~~ 37 (163)
T cd03135 6 ADGFEEIEAVTPVDVLRRAG-IEVTTASLEKKL 37 (163)
T ss_pred cCCcchHHHHHHHHHHHHCC-CEEEEEEcCCCc
Confidence 46788888999999999999 799999998765
No 125
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=20.62 E-value=1.3e+02 Score=31.35 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=23.1
Q ss_pred CCeEEEecCCCCCCcc--HHHHHHHHHhcCCCeEEEEee
Q 024878 66 KPVLLVTNGDGIESPG--LVYLVEALVREGLYNVHVCAP 102 (261)
Q Consensus 66 ~~~ILlTNDDGi~SpG--i~aL~~aL~~~G~~~V~VvAP 102 (261)
++.|||| ||+.... ....++.|++.| ++|++++=
T Consensus 151 KVVILLT--DG~sns~~dvleaAq~LR~~G-VeI~vIGV 186 (576)
T PTZ00441 151 QLVILMT--DGIPNSKYRALEESRKLKDRN-VKLAVIGI 186 (576)
T ss_pred eEEEEEe--cCCCCCcccHHHHHHHHHHCC-CEEEEEEe
Confidence 5667776 8886443 333467899888 68888754
No 126
>PRK06182 short chain dehydrogenase; Validated
Probab=20.58 E-value=1.8e+02 Score=25.55 Aligned_cols=77 Identities=21% Similarity=0.238 Sum_probs=42.8
Q ss_pred CCeEEEecCCCCCCccH-HHHHHHHHhcCCCeEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHHH
Q 024878 66 KPVLLVTNGDGIESPGL-VYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSL 144 (261)
Q Consensus 66 ~~~ILlTNDDGi~SpGi-~aL~~aL~~~G~~~V~VvAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~y~V~GTPaDCV~l 144 (261)
..+||||=-. -|| +++++.|.+.| ++|++++-..++ .- .+ . ..+.+.+.+|=+=.+.+.-
T Consensus 3 ~k~vlItGas----ggiG~~la~~l~~~G-~~V~~~~r~~~~--l~-~~--~---------~~~~~~~~~Dv~~~~~~~~ 63 (273)
T PRK06182 3 KKVALVTGAS----SGIGKATARRLAAQG-YTVYGAARRVDK--ME-DL--A---------SLGVHPLSLDVTDEASIKA 63 (273)
T ss_pred CCEEEEECCC----ChHHHHHHHHHHHCC-CEEEEEeCCHHH--HH-HH--H---------hCCCeEEEeeCCCHHHHHH
Confidence 3579999532 244 56788888888 788877643221 00 00 0 0123345566555555555
Q ss_pred HHhcccCCCCCCcEEEe
Q 024878 145 ALSGALFSWSKPLLVIS 161 (261)
Q Consensus 145 aL~~~l~~~~~PDLVIS 161 (261)
.+..+.....++|.||.
T Consensus 64 ~~~~~~~~~~~id~li~ 80 (273)
T PRK06182 64 AVDTIIAEEGRIDVLVN 80 (273)
T ss_pred HHHHHHHhcCCCCEEEE
Confidence 55543322347899995
No 127
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=20.48 E-value=1.4e+02 Score=27.79 Aligned_cols=47 Identities=21% Similarity=0.081 Sum_probs=39.3
Q ss_pred CCcEEEecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEEeecccC
Q 024878 155 KPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKK 201 (261)
Q Consensus 155 ~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAvS~~~~~ 201 (261)
+.|.||-|-..=.--|.-+.-.||-..|+-|..++||.+.+.-.++.
T Consensus 151 ~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv~V~~~s~Kf 197 (253)
T PRK06372 151 NVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPFYSLTISMKI 197 (253)
T ss_pred hCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEEeecccc
Confidence 58999999877666666677899999999999999999987766553
No 128
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=20.41 E-value=1.1e+02 Score=28.54 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=21.8
Q ss_pred cHHHHHHHHHhcCCCeEEEEeeCCCC
Q 024878 81 GLVYLVEALVREGLYNVHVCAPQSDK 106 (261)
Q Consensus 81 Gi~aL~~aL~~~G~~~V~VvAP~~~q 106 (261)
-.+.|+++|.+.| |+|+|+.+....
T Consensus 12 ~~~~la~~L~~~G-~~v~~~~~~~~~ 36 (396)
T cd03818 12 QFRHLAPALAAQG-HEVVFLTEPNAA 36 (396)
T ss_pred hHHHHHHHHHHCC-CEEEEEecCCCC
Confidence 3688999999999 899999988764
No 129
>PRK06179 short chain dehydrogenase; Provisional
Probab=20.33 E-value=5.7e+02 Score=22.14 Aligned_cols=74 Identities=22% Similarity=0.269 Sum_probs=42.4
Q ss_pred CeEEEecCCCCCCccH-HHHHHHHHhcCCCeEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHHHH
Q 024878 67 PVLLVTNGDGIESPGL-VYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLA 145 (261)
Q Consensus 67 ~~ILlTNDDGi~SpGi-~aL~~aL~~~G~~~V~VvAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~y~V~GTPaDCV~la 145 (261)
.+||||=-.| || +++++.|.+.| ++|++++...++-.. . .+.+.+.+|=+-.+-+.-+
T Consensus 5 ~~vlVtGasg----~iG~~~a~~l~~~g-~~V~~~~r~~~~~~~------~----------~~~~~~~~D~~d~~~~~~~ 63 (270)
T PRK06179 5 KVALVTGASS----GIGRATAEKLARAG-YRVFGTSRNPARAAP------I----------PGVELLELDVTDDASVQAA 63 (270)
T ss_pred CEEEEecCCC----HHHHHHHHHHHHCC-CEEEEEeCChhhccc------c----------CCCeeEEeecCCHHHHHHH
Confidence 4699996443 33 57788888888 789888754322100 0 1223445554444445555
Q ss_pred HhcccCCCCCCcEEEe
Q 024878 146 LSGALFSWSKPLLVIS 161 (261)
Q Consensus 146 L~~~l~~~~~PDLVIS 161 (261)
+..+.....++|+||.
T Consensus 64 ~~~~~~~~g~~d~li~ 79 (270)
T PRK06179 64 VDEVIARAGRIDVLVN 79 (270)
T ss_pred HHHHHHhCCCCCEEEE
Confidence 5543222346899886
No 130
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.25 E-value=2.8e+02 Score=26.04 Aligned_cols=33 Identities=27% Similarity=0.289 Sum_probs=27.0
Q ss_pred CCcEEEecCCCCCCCCCcccccchH-HHHHHHHHcCCCeeEEeec
Q 024878 155 KPLLVISGINRGSSCGHHMFYSGVV-AGAREALICGVPSLSISLN 198 (261)
Q Consensus 155 ~PDLVISGIN~G~N~G~~v~ySGTV-gAA~EA~~~GIPAIAvS~~ 198 (261)
.+||||+ +|-| ||+ .||+.....++|-+.|.++
T Consensus 64 ~~dlvi~-------lGGD----GT~L~aa~~~~~~~~PilGIN~G 97 (292)
T PRK01911 64 SADMVIS-------IGGD----GTFLRTATYVGNSNIPILGINTG 97 (292)
T ss_pred CCCEEEE-------ECCc----HHHHHHHHHhcCCCCCEEEEecC
Confidence 5799988 5555 886 8888888889999999876
No 131
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=20.22 E-value=8.4e+02 Score=24.04 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=26.2
Q ss_pred eEEEecCCCCCCccHHHHHHHHHhcCCCeEEEEeeCCCCccc
Q 024878 68 VLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVS 109 (261)
Q Consensus 68 ~ILlTNDDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~~qSg~ 109 (261)
+|||-|-.-+ -.-+.++++++| .+++++..+.+..+.
T Consensus 4 kvLi~~~gei----a~~ii~a~~~~G-i~~v~v~~~~d~~a~ 40 (472)
T PRK07178 4 KILIANRGEI----AVRIVRACAEMG-IRSVAIYSEADRHAL 40 (472)
T ss_pred EEEEECCcHH----HHHHHHHHHHcC-CeEEEEeCCCccCCc
Confidence 6888876544 235568888899 688888887665443
No 132
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=20.13 E-value=1.7e+02 Score=26.98 Aligned_cols=38 Identities=0% Similarity=-0.027 Sum_probs=26.7
Q ss_pred CeEEEecCCCC----CCccHHHHHHHHHhc--CCCeEEEEeeCCC
Q 024878 67 PVLLVTNGDGI----ESPGLVYLVEALVRE--GLYNVHVCAPQSD 105 (261)
Q Consensus 67 ~~ILlTNDDGi----~SpGi~aL~~aL~~~--G~~~V~VvAP~~~ 105 (261)
|||++.++--- ...-+..|+++|.+. | ++|++++|...
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g-~~v~v~~~~~~ 44 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKIN-CEMFFFCRNDK 44 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcc-eeEEEEecCCC
Confidence 67887766311 123357789999988 7 89999998653
No 133
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=20.05 E-value=1.9e+02 Score=24.60 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=22.0
Q ss_pred ccHHHHHHHHHhcCCCeEEEEeeCCCCc
Q 024878 80 PGLVYLVEALVREGLYNVHVCAPQSDKS 107 (261)
Q Consensus 80 pGi~aL~~aL~~~G~~~V~VvAP~~~qS 107 (261)
.-+..|+++|.+.| |+|.|+.+.....
T Consensus 16 ~~~~~l~~~l~~~g-~~v~v~~~~~~~~ 42 (353)
T cd03811 16 RVLLNLANGLDKRG-YDVTLVVLRDEGD 42 (353)
T ss_pred hhHHHHHHHHHhcC-ceEEEEEcCCCCc
Confidence 44788999998888 8999999876544
Done!