Query 024879
Match_columns 261
No_of_seqs 114 out of 333
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 16:00:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024879.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024879hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_B RP10A, 40S ribosomal pr 100.0 9E-110 3E-114 752.9 14.8 248 1-251 1-249 (255)
2 2xzm_4 40S ribosomal protein S 100.0 2E-105 7E-110 725.8 25.1 236 1-236 1-242 (265)
3 3j20_A 30S ribosomal protein S 100.0 2E-84 6.8E-89 569.9 21.8 193 16-224 5-197 (198)
4 3bk6_A PH stomatin; archaea, t 86.7 7.6 0.00026 32.0 11.0 88 124-217 20-109 (188)
5 2rpb_A Hypothetical membrane p 80.1 10 0.00036 28.3 8.5 89 125-217 17-105 (113)
6 4fvg_A Stomatin; mixed alpha-b 64.7 48 0.0016 25.8 11.3 88 124-217 25-114 (133)
7 1win_A Flotillin 2; BAND 7 dom 60.3 60 0.0021 25.5 10.0 91 124-217 21-119 (143)
8 3mhs_B Protein SUS1; multi-pro 26.7 83 0.0028 23.9 4.5 41 162-203 40-87 (96)
9 4dhx_B Enhancer of yellow 2 tr 20.0 1.2E+02 0.004 23.3 4.2 41 162-202 44-92 (101)
10 1xdx_A Tctex1 light chain prot 16.6 2.1E+02 0.0073 21.6 5.0 60 160-220 14-73 (114)
No 1
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B
Probab=100.00 E-value=8.9e-110 Score=752.91 Aligned_cols=248 Identities=59% Similarity=0.942 Sum_probs=213.7
Q ss_pred CCcCCCcccccCcCCCcccccCCCCCcceEEEeCCCCCCcceeeeeeeecccCcccCccCCCCcEEEEeccCCCCchhhc
Q 024879 1 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHA 80 (261)
Q Consensus 1 Ma~gknk~~~kgkKg~kkk~~D~f~kK~WY~V~AP~~F~~~~iG~T~v~kt~g~k~~~d~l~GRv~EvsLaDL~~d~~~~ 80 (261)
|||||||+|+|||||+|||++|||++|+||+|+||++|+.++||+|||+||||++|+||+|+|||||+|||||+||++++
T Consensus 1 ma~gknk~l~kgkkg~kkk~~D~f~~K~WY~VkAP~~F~~r~iGkT~v~~t~gtkia~d~L~GRv~EvsLaDL~~D~~~~ 80 (255)
T 3u5c_B 1 MAVGKNKRLSKGKKGQKKRVVDPFTRKEWFDIKAPSTFENRNVGKTLVNKSTGLKSASDALKGRVVEVCLADLQGSEDHS 80 (255)
T ss_dssp -------------------CCCTTTTCCEEEEECCSSSSCSEEEEEECCCCCSSSCHHHHSCCCEEEEESHHHHSCSTTS
T ss_pred CCccCCCcccccccCCcccccCCcccceeEEEeCccccCCcceeEEEcccccCcccCchhccCcEEEEEhhhccCChhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEeeecCCeeeEeeecccccchhhhhhhccceeeEEEEEEEEeCCCcEEEEEEEEEeeccCCcCccchhhhhhh
Q 024879 81 YRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQ 160 (261)
Q Consensus 81 ~rK~kf~i~~V~G~~a~T~F~GmelT~DklrSlVrK~~t~Iea~vdVkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~~SQ 160 (261)
|+||+|+|++|+|++|+|+|||||||+||||||||||||+|||++||+|+|||+|||||||||++++||.+|||||++||
T Consensus 81 ~rK~kl~i~~V~G~~~lT~F~GmdlT~DklrSlVrKw~s~Iea~vdVkT~DGy~lRvf~i~fT~kr~~q~~kt~YA~~sQ 160 (255)
T 3u5c_B 81 FRKIKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSH 160 (255)
T ss_dssp SCEEEEECCCEETTEECCEEEEECCCHHHHHHHCCTTSCEEECCEEEECSSSCEEEECCEEECCCCTTCCSSCCCCCSHH
T ss_pred ceEEEEEEEeecCCEEEEEEcceeechhhhhhhccccceEEEEEEEEEecCCCEEEEEEEEEEcccccccccceechHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhCCHHHHHHHHhhhhHHHHHHHhccccccccceeEEEEEeeeCCccccchhhhhcCCc-cccC
Q 024879 161 IRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDV 239 (261)
Q Consensus 161 i~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~keI~k~~k~IyPl~~V~IrKvKvlk~Pk~~~~kl~e~~~~~-~~~~ 239 (261)
+++||++|+|+|++++++++|+|||++||+|+|++||+++|++|||||+|||||||||+.|+||+++||||||++ ++++
T Consensus 161 i~~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~~eI~k~~k~IyPL~~V~IrKvKvLk~Pk~d~~kl~e~hg~~~~~~~ 240 (255)
T 3u5c_B 161 IRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEK 240 (255)
T ss_dssp HHHHHHHHHHHHHHHSSSSHHHHHHHHHTTTHHHHHHHHHHHTTCCCEEEECCCEEEEECCCCCHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHHHHhhhCCHHHHHHHHcCchHHHHHHHHhccccccceEEEEEEEEeecCcccHhHHHhhhcCCCCCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 6789
Q ss_pred ceeecCCCCCCC
Q 024879 240 GVKMERPADEPI 251 (261)
Q Consensus 240 g~~~~~~~~~~~ 251 (261)
|++|+ +||+
T Consensus 241 g~~v~---~~~~ 249 (255)
T 3u5c_B 241 GKKVT---GFKD 249 (255)
T ss_dssp ------------
T ss_pred ccccc---ccCC
Confidence 99998 6754
No 2
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4
Probab=100.00 E-value=2.1e-105 Score=725.84 Aligned_cols=236 Identities=45% Similarity=0.790 Sum_probs=210.4
Q ss_pred CCcCCCcccc-c-CcCCCcccccCCCCCcceEEEeCCCCCCcceeeeeeeecccCcccCccCCCCcEEEEeccCCCCch-
Q 024879 1 MAVGKNKRIS-K-GKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEE- 77 (261)
Q Consensus 1 Ma~gknk~~~-k-gkKg~kkk~~D~f~kK~WY~V~AP~~F~~~~iG~T~v~kt~g~k~~~d~l~GRv~EvsLaDL~~d~- 77 (261)
|||||||+++ | ||||+|||++|||++|+||+|+||++|+.++||+||||||||++++||+|+||||||||+||+||+
T Consensus 1 mavgknk~l~~k~gkkg~kkk~~Dpf~~K~WY~VkAP~~F~~r~iGkTlv~rt~gtkia~d~L~GRv~EvsLaDL~~d~~ 80 (265)
T 2xzm_4 1 MTQGKNPGLKAGGGKKGAKKRTIDPLSRKEWYDFRAPIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLKDNSN 80 (265)
T ss_dssp --------------CCCSCCCCSCTTSSEEEEEEECCTTSCSSCCSEEEEECCCSSSCSTTSGGGCEEEEESCSSSSTTT
T ss_pred CCccCCCccccccCcccccccccCCCcccceEEEECCcccCCceeEEEecccccCcccCchhcCCcEEEEEHHHhcCChh
Confidence 9999999996 4 799999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhceeEEEEEEeeecCCeeeEeeecccccchhhhhhhccceeeEEEEEEEEeCCCcEEEEEEEEEeeccC---CcCccch
Q 024879 78 EHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLP---NQVKRTC 154 (261)
Q Consensus 78 ~~~~rK~kf~i~~V~G~~a~T~F~GmelT~DklrSlVrK~~t~Iea~vdVkT~DGy~lRvf~i~fT~kr~---~q~kkt~ 154 (261)
+++|+||+|+|++|+|++|+|+|||||||+||||||||||||+|||++||+|+|||+|||||||||++++ ||++|||
T Consensus 81 ~~~~rK~kf~i~~V~G~nalT~F~GmdlTrDklrSlVrKw~s~Iea~vdVkT~DGY~lRvf~i~fT~kr~~~~~q~kkt~ 160 (265)
T 2xzm_4 81 DKAWRKVKLVIDEVDGRNAKTSFYGLDITRDRLCSMIRKWQTLIEARVDCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTC 160 (265)
T ss_dssp TSCCCEEEEEEEEECSSCEEEEEEEEECCHHHHHHSCCTTBCEEEEEEEEEETTTEEEEEEEEEEECCCSSCCSCSSCCB
T ss_pred hhcceEEEEEEEeecCCEEEEEEeeeeccHHHhhhhhcccceeEEEEEEEEeCCCcEEEEEEEEEEecccccccccceee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhhCCHHHHHHHHhhhhHHHHHHHhccccccccceeEEEEEeeeCCccccchhhhhcCC
Q 024879 155 YAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 234 (261)
Q Consensus 155 Ya~~SQi~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~keI~k~~k~IyPl~~V~IrKvKvlk~Pk~~~~kl~e~~~~ 234 (261)
||++||+++||++|+|+|++++++++|+|||++||+|+|++||+++|++|||||+|+|||||||+.|+||+++|||+||+
T Consensus 161 Ya~~SQir~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~keI~k~~k~IyPL~~V~IrKvKvLk~Pk~~~~~l~e~hg~ 240 (265)
T 2xzm_4 161 YAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKETKNIFPLQNITIRKVKVLKRPKLDATKIAELYSH 240 (265)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTHHHHHHHHHHTTTCCEEEEEEEEEEEEECCCC-----------
T ss_pred eccccchHHHHHHHHHHHHHHhhhCCHHHHHHHHccchHHHHHHHHhhhccccceEEEEEEEEEecCchHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 024879 235 YS 236 (261)
Q Consensus 235 ~~ 236 (261)
++
T Consensus 241 ~~ 242 (265)
T 2xzm_4 241 EK 242 (265)
T ss_dssp --
T ss_pred cc
Confidence 63
No 3
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2e-84 Score=569.86 Aligned_cols=193 Identities=34% Similarity=0.514 Sum_probs=186.6
Q ss_pred CcccccCCCCCcceEEEeCCCCCCcceeeeeeeecccCcccCccCCCCcEEEEeccCCCCchhhceeEEEEEEeeecCCe
Q 024879 16 GKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKN 95 (261)
Q Consensus 16 ~kkk~~D~f~kK~WY~V~AP~~F~~~~iG~T~v~kt~g~k~~~d~l~GRv~EvsLaDL~~d~~~~~rK~kf~i~~V~G~~ 95 (261)
..+|++|||++|+||+|+||++|+.++||+|||| .||+|+|||||+|||||+||++++|+||+|+|++|+|++
T Consensus 5 ~~~k~~D~~~~K~WY~V~AP~~F~~~~iG~T~~~-------~~~~l~GRv~EvsL~DL~~d~~~~~~K~kf~i~~V~G~~ 77 (198)
T 3j20_A 5 RATTTRDKWKLKQWYIIYAPDFFGGVEVGLTPAD-------DPEKVLNRVVEVTLKDVTGDFTKSHVKLYFQVYDVKGQN 77 (198)
T ss_dssp ----CCCCSSSEEEEEEECCSSSSCCCCCEEEEE-------SSSCCSSCEEEECCCSSTTHHHHHCCCEEEEEEEESSSE
T ss_pred ccccccCCCccceeEEEECchhcCCceeEEEEcc-------CcccccCeEEEEEHHHhcCChhhheEEEEEEEEeccCCE
Confidence 3457899999999999999999999999999999 589999999999999999999999999999999999999
Q ss_pred eeEeeecccccchhhhhhhccceeeEEEEEEEEeCCCcEEEEEEEEEeeccCCcCccchhhhhhhhHHHHHHHHHHHHHH
Q 024879 96 VLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQ 175 (261)
Q Consensus 96 a~T~F~GmelT~DklrSlVrK~~t~Iea~vdVkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~~SQi~~IRk~m~eii~~~ 175 (261)
|+|+|||||||+||||||||||||+|||++||+|+|||+|||||||||+++ |++||+++||++|+|+|+++
T Consensus 78 a~T~F~G~~lT~DklrSlVrk~~s~Iea~vdVkT~DGy~lRvf~i~fT~kr---------a~~sQ~~~IRk~m~eii~~~ 148 (198)
T 3j20_A 78 AYTKFKGMKLARSYIRSLVRRKTTRIDGIFNITTKDGYKLRVMAMAIAMRR---------IQTSQERAIRKIMQEIIYKK 148 (198)
T ss_dssp EEEEEEEECCCHHHHHHHCCSSSCEEEEEEEEECTTSCEEEEEEEEEECSS---------CCCTHHHHHHHHHHHHHHHH
T ss_pred EEEEEcceeechhhhhhheecceeEEEEEEEEEecCCCEEEEEEEEEEecc---------ccchhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999997 99999999999999999999
Q ss_pred HhhCCHHHHHHHHhhhhHHHHHHHhccccccccceeEEEEEeeeCCccc
Q 024879 176 AASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFD 224 (261)
Q Consensus 176 ~~~~~l~e~V~~li~~~i~keI~k~~k~IyPl~~V~IrKvKvlk~Pk~~ 224 (261)
+++++|+|||++|++|+|++||+++|++|||||+|||||||||+.|+|-
T Consensus 149 ~~~~~l~e~V~~li~~~i~~eI~k~~k~IyPl~~V~IrKvKvlk~Pk~~ 197 (198)
T 3j20_A 149 AEELNFKDFVLESVNGKIAAEIAKEAKKIYPLRKAEIRKIKVLEEPQVI 197 (198)
T ss_dssp HHHSCHHHHHHHHHSHHHHHHHHHHHHHHSCEEEEEEEEEEEEECSCSC
T ss_pred hccCCHHHHHHHHcCChHHHHHHHhhCcccccceEEEEEEEEeeccCcc
Confidence 9999999999999999999999999999999999999999999999984
No 4
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=86.73 E-value=7.6 Score=32.02 Aligned_cols=88 Identities=15% Similarity=0.171 Sum_probs=56.4
Q ss_pred EEEEEeCCCcEEEEEEEEEeeccCCcCccchhhhhhhhHHHHHHHHHHHHHHHhhCCHHHHHHH--HhhhhHHHHHHHhc
Q 024879 124 YVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEK--FIAEIIGREIEKAT 201 (261)
Q Consensus 124 ~vdVkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~~SQi~~IRk~m~eii~~~~~~~~l~e~V~~--li~~~i~keI~k~~ 201 (261)
..++.|+||..|+|-++++-+=. + ..+-.|.-..-..+++......+...+...++++++.. -+...|...+...+
T Consensus 20 ~~~v~TkD~~~V~v~~~v~yrI~-d-p~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~ell~~R~~i~~~i~~~l~~~~ 97 (188)
T 3bk6_A 20 VQETITKDNVPVRVNAVVYFRVV-D-PVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELLSERDKLNMQLQRIIDEAT 97 (188)
T ss_dssp EEEEECTTSCEEEEEEEEEEEES-C-HHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHHHHHCHHHHHHHHHHHHHHHT
T ss_pred CceeEcCCCCEEEEEEEEEEEEC-C-HHHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45899999999999888655442 1 22223322233456788888999999999999999853 34444444444444
Q ss_pred cccccccceeEEEEEe
Q 024879 202 LSIYPLQNVFIRKVKI 217 (261)
Q Consensus 202 k~IyPl~~V~IrKvKv 217 (261)
.. .-+.|..|.+
T Consensus 98 ~~----~GI~v~~v~I 109 (188)
T 3bk6_A 98 DP----WGIKVTAVEI 109 (188)
T ss_dssp GG----GTEEEEEEEE
T ss_pred Hh----cCeEEEEEEE
Confidence 43 3455555544
No 5
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=80.10 E-value=10 Score=28.31 Aligned_cols=89 Identities=16% Similarity=0.189 Sum_probs=54.5
Q ss_pred EEEEeCCCcEEEEEEEEEeeccCCcCccchhhhhhhhHHHHHHHHHHHHHHHhhCCHHHHHHHHhhhhHHHHHHHhcccc
Q 024879 125 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSI 204 (261)
Q Consensus 125 vdVkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~~SQi~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~keI~k~~k~I 204 (261)
..+.|+||-.|+|.+.+.-+=. + ..+-.|.-..-..+|+..+...+.+.+...++++++.. -+.|+.+|....+..
T Consensus 17 ~~v~T~D~~~v~v~~~v~~rI~-d-p~~~~~~v~~~~~~l~~~~~~~lR~vig~~~l~ei~~~--R~~i~~~i~~~l~~~ 92 (113)
T 2rpb_A 17 QEVICKDNVVVTVDAVVYYQVI-D-PVKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETLSG--RDIINARLREELDKI 92 (113)
T ss_dssp EEEECTTSCEEEECEEEEEEES-C-TTTCTTTTTHHHHHHHHHHHHHHHHHHTSCCTTHHHHC--HHHHHHHHHHHHHHH
T ss_pred ceeEeCCCCEEEEEEEEEEEEC-C-HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCcHHHHHhC--HHHHHHHHHHHHHHH
Confidence 5889999999999887554432 1 12222222233457999999999999999999999862 244444444444433
Q ss_pred ccccceeEEEEEe
Q 024879 205 YPLQNVFIRKVKI 217 (261)
Q Consensus 205 yPl~~V~IrKvKv 217 (261)
.--.-++|..+.+
T Consensus 93 ~~~~Gi~v~~v~I 105 (113)
T 2rpb_A 93 TDRWGVKITRVEI 105 (113)
T ss_dssp HGGGTEECCCEEE
T ss_pred HHhcCeEEEEEEE
Confidence 2222344444433
No 6
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=64.71 E-value=48 Score=25.80 Aligned_cols=88 Identities=14% Similarity=0.122 Sum_probs=60.1
Q ss_pred EEEEEeCCCcEEEEEEEEEeeccCCcCccchhhhhhhhHHHHHHHHHHHHHHHhhCCHHHHHHH--HhhhhHHHHHHHhc
Q 024879 124 YVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEK--FIAEIIGREIEKAT 201 (261)
Q Consensus 124 ~vdVkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~~SQi~~IRk~m~eii~~~~~~~~l~e~V~~--li~~~i~keI~k~~ 201 (261)
...+.|+|+..|.|-.+++-+=. ...+-.|.=..-..+++......|.+.+...+|++++.. -|...+...+.+.+
T Consensus 25 ~q~vlT~D~~~v~Vd~~v~yrI~--Dp~~~~~~v~~~~~~l~~~~~~~lR~vig~~~ldeil~~r~~i~~~i~~~l~~~~ 102 (133)
T 4fvg_A 25 PQEVLTKDSVTISVDGVVYYRVQ--NATLAVANITNADSATRLLAQTTLRNALGTKNLSQILSDREEIAHHMQSTLDDAT 102 (133)
T ss_dssp EEEEECTTCCEEEEEEEEEEEES--CHHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CeEEEeCCCCEEEEEEEEEEEEe--ehHHhHhhhhhHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45799999999998887766542 123434444556678888999999999999999999852 34444555555544
Q ss_pred cccccccceeEEEEEe
Q 024879 202 LSIYPLQNVFIRKVKI 217 (261)
Q Consensus 202 k~IyPl~~V~IrKvKv 217 (261)
... =|+|..|.+
T Consensus 103 ~~~----GI~V~~V~i 114 (133)
T 4fvg_A 103 DDW----GIKVERVEI 114 (133)
T ss_dssp GGG----TEEEEEEEE
T ss_pred hcC----CEEEEEEEE
Confidence 432 456666555
No 7
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=60.35 E-value=60 Score=25.52 Aligned_cols=91 Identities=10% Similarity=0.107 Sum_probs=53.6
Q ss_pred EEEEEeCCCcEEEEEEEEEeeccCCcCccchhhh-------hhhh-HHHHHHHHHHHHHHHhhCCHHHHHHHHhhhhHHH
Q 024879 124 YVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQ-------ASQI-RQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGR 195 (261)
Q Consensus 124 ~vdVkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~-------~SQi-~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~k 195 (261)
...|.|+|+-.|.|-++++-+=..+ ..+-.|+- ..++ ..+...+...+...+..++|+|++.. -+.|..
T Consensus 21 ~q~viTkD~v~v~Vdavv~~rI~dd-~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~~tldeils~--R~~i~~ 97 (143)
T 1win_A 21 CEDVETAEGVALTVTGVAQVKIMTE-KELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQIYQD--RDQFAK 97 (143)
T ss_dssp EEEEECSSSCEEEECCEEEEEECCC-SSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHT--HHHHHH
T ss_pred cceeEcCCCCEEEEEEEEEEEECCC-HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH--HHHHHH
Confidence 3468999999999888776665321 22322321 1222 33566677899999999999999973 344444
Q ss_pred HHHHhccccccccceeEEEEEe
Q 024879 196 EIEKATLSIYPLQNVFIRKVKI 217 (261)
Q Consensus 196 eI~k~~k~IyPl~~V~IrKvKv 217 (261)
+|...+..----.=++|.-+.+
T Consensus 98 ~v~~~~~~~~~~~Gi~V~~v~I 119 (143)
T 1win_A 98 LVREVAAPDVGRMGIEILSFTI 119 (143)
T ss_dssp HHHHHHHHHHTTTTEEEEEEEC
T ss_pred HHHHHHHHHHHhCCCEEEEEEE
Confidence 4444433322222344544444
No 8
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=26.68 E-value=83 Score=23.93 Aligned_cols=41 Identities=7% Similarity=0.165 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHH-------hhhhHHHHHHHhccc
Q 024879 162 RQIRRKMREIMIAQAASCDLKGLVEKF-------IAEIIGREIEKATLS 203 (261)
Q Consensus 162 ~~IRk~m~eii~~~~~~~~l~e~V~~l-------i~~~i~keI~k~~k~ 203 (261)
..||....++|.+. .+.++++++..+ +|+++-+|+....+.
T Consensus 40 Devr~~~r~~i~~~-~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~ 87 (96)
T 3mhs_B 40 DKVKDLTKSEMNIN-ESTNFTQILSTVEPKALEMVSDSTRETVLKQIRE 87 (96)
T ss_dssp HHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHHHH
Confidence 34666667777766 788999998765 677887777665443
No 9
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=20.02 E-value=1.2e+02 Score=23.29 Aligned_cols=41 Identities=12% Similarity=0.337 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHH-hhCCHHHHHHHH-------hhhhHHHHHHHhcc
Q 024879 162 RQIRRKMREIMIAQA-ASCDLKGLVEKF-------IAEIIGREIEKATL 202 (261)
Q Consensus 162 ~~IRk~m~eii~~~~-~~~~l~e~V~~l-------i~~~i~keI~k~~k 202 (261)
..||....++|.+.. .+.++++++..+ +|+++-.|+....+
T Consensus 44 Devr~~~r~~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~rIr 92 (101)
T 4dhx_B 44 DQLKAHCKEVIKEKGLEHVTVDDLVAEITPKGRALVPDSVKKELLQRIR 92 (101)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHHH
Confidence 356666777777664 588999998665 67888777766544
No 10
>1xdx_A Tctex1 light chain protein; chlamydomonas flagella, tctex1 dimer, solution structure, contractIle protein; NMR {Chlamydomonas reinhardtii}
Probab=16.61 E-value=2.1e+02 Score=21.64 Aligned_cols=60 Identities=7% Similarity=-0.027 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHHHhhCCHHHHHHHHhhhhHHHHHHHhccccccccceeEEEEEeeeC
Q 024879 160 QIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKA 220 (261)
Q Consensus 160 Qi~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~keI~k~~k~IyPl~~V~IrKvKvlk~ 220 (261)
....++.++.++|.+.+.+..++.---.-....|..+|.++.+..-|-.+ +|--+-+...
T Consensus 14 ~~~~v~~ii~~~l~~~L~~~~Y~~~~~~~~~~~i~~~i~~~lk~l~~~YK-~iV~v~I~q~ 73 (114)
T 1xdx_A 14 VADDVSNIIKESIDAVLQNQQYSEAKVSQWTSSCLEHCIKRLTALNKPFK-YVVTCIIMQK 73 (114)
T ss_dssp CCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHTCSSE-EEEEEEEECT
T ss_pred CHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHHHHHHhhCCCce-EEEEEEEEEc
Confidence 45788999999999999999887654334445566666666665544233 4444444444
Done!