BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024880
(261 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 124/177 (70%), Gaps = 1/177 (0%)
Query: 84 PPVESKLPCSLEELYSGSTRKMKISRTVVDANGRQT-PESEILTIDVKPGWKKGTKITFP 142
PPV L SLEE+YSG T+KMKIS ++ +G+ E +ILTI+VK GWK+GTKITFP
Sbjct: 12 PPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFP 71
Query: 143 DKGNEQPNQLPADLVFVIDEKPHDVYKRDSNDLIVNHKVSLAEALGGTSVSLITLDGRDL 202
+G++ N +PAD+VFV+ +KPH+++KRD +D+I ++SL EAL G +V++ TLDGR +
Sbjct: 72 KEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTI 131
Query: 203 NIAVTDIISPGFELGIPGEGMPIAREPGNRGDLRIKFEVKFPTKLTPEQRAGLKRAL 259
+ D+I PG +PGEG+P+ + P RGDL I+FEV FP ++ R L++ L
Sbjct: 132 PVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 188
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/180 (47%), Positives = 126/180 (70%), Gaps = 1/180 (0%)
Query: 81 RKPPPVESKLPCSLEELYSGSTRKMKISRTVVDANGRQT-PESEILTIDVKPGWKKGTKI 139
++ PPV L SLEE+YSG T+KMKIS ++ +G+ E +ILTI+VK GWK+GTKI
Sbjct: 2 KQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKI 61
Query: 140 TFPDKGNEQPNQLPADLVFVIDEKPHDVYKRDSNDLIVNHKVSLAEALGGTSVSLITLDG 199
TFP +G++ N +PAD+VFV+ +KPH+++KRD +D+I ++SL EAL G +V++ TLDG
Sbjct: 62 TFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDG 121
Query: 200 RDLNIAVTDIISPGFELGIPGEGMPIAREPGNRGDLRIKFEVKFPTKLTPEQRAGLKRAL 259
R + + D+I PG +PGEG+P+ + P RGDL I+FEV FP ++ R L++ L
Sbjct: 122 RTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 181
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 124/177 (70%), Gaps = 1/177 (0%)
Query: 84 PPVESKLPCSLEELYSGSTRKMKISRTVVDANGRQT-PESEILTIDVKPGWKKGTKITFP 142
PPV L SLEE+YSG T+KMKIS ++ +G+ E +ILTI+VK GWK+GTKITFP
Sbjct: 3 PPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFP 62
Query: 143 DKGNEQPNQLPADLVFVIDEKPHDVYKRDSNDLIVNHKVSLAEALGGTSVSLITLDGRDL 202
+G++ N +PAD+VFV+ +KPH+++KRD +D+I ++SL EAL G +V++ TLDGR +
Sbjct: 63 KEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTI 122
Query: 203 NIAVTDIISPGFELGIPGEGMPIAREPGNRGDLRIKFEVKFPTKLTPEQRAGLKRAL 259
+ D+I PG +PGEG+P+ + P RGDL I+FEV FP ++ R L++ L
Sbjct: 123 PVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 179
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
pdb|2Q2G|B Chain B, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
Length = 180
Score = 130 bits (326), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 104/175 (59%), Gaps = 4/175 (2%)
Query: 87 ESKLPCSLEELYSGSTRKMKISRT-VVDANGRQTPESEILTIDVKPGWKKGTKITFPDKG 145
E L +LEELY G +K+K++R ++ R E I+ +++KPGWK GTK+T+ +G
Sbjct: 7 EVPLLVTLEELYLGKRKKIKVTRKRFIEHKVRN--EENIVEVEIKPGWKDGTKLTYSGEG 64
Query: 146 N-EQPNQLPADLVFVIDEKPHDVYKRDSNDLIVNHKVSLAEALGGTSVSLITLDGRDLNI 204
+ E P P DLV +I K H + RD LI + L AL G + + TLD R+L I
Sbjct: 65 DQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIXKVTIPLVRALTGFTCPVTTLDNRNLQI 124
Query: 205 AVTDIISPGFELGIPGEGMPIAREPGNRGDLRIKFEVKFPTKLTPEQRAGLKRAL 259
+ +I++P +P EG PI +PG +GDL ++F++ FP LTPEQ+ +K AL
Sbjct: 125 PIKEIVNPKTRKIVPNEGXPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEAL 179
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|B Chain B, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|C Chain C, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
Length = 173
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 93/171 (54%), Gaps = 5/171 (2%)
Query: 86 VESKLPCSLEELYSGSTRKMKISRTVVDANGRQTPESEILTIDVKPGWKKGTKITFPDKG 145
V+ LP SLE+L+ G + KI R +T + I +KPGWK GTKIT+ ++G
Sbjct: 3 VQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQ----IDIQLKPGWKAGTKITYKNQG 58
Query: 146 NEQPNQ-LPADLVFVIDEKPHDVYKRDSNDLIVNHKVSLAEALGGTSVSLITLDGRDLNI 204
+ P L FVI EK H +KRD +DLI +S E+L G S ++ T+DGR L +
Sbjct: 59 DYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPL 118
Query: 205 AVTDIISPGFELGIPGEGMPIAREPGNRGDLRIKFEVKFPTKLTPEQRAGL 255
+ + P PG+GMP + P RG+L +K++V +P L Q+ +
Sbjct: 119 SRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAI 169
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 96/175 (54%), Gaps = 13/175 (7%)
Query: 86 VESKLPCSLEELYSGSTRKMKISRTVVDANGRQTPE--SEILTIDV--KPGWKKGTKITF 141
V+ LP SLE+L+ G + KI GR+ P SE ID+ KPGWK GTKIT+
Sbjct: 3 VQVNLPVSLEDLFVGKKKSFKI--------GRKGPHGASEKTQIDIQLKPGWKAGTKITY 54
Query: 142 PDKGNEQPNQ-LPADLVFVIDEKPHDVYKRDSNDLIVNHKVSLAEALGGTSVSLITLDGR 200
++G+ P L FVI EK H +KRD +DLI +S E+L G S ++ T+DGR
Sbjct: 55 KNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGR 114
Query: 201 DLNIAVTDIISPGFELGIPGEGMPIAREPGNRGDLRIKFEVKFPTKLTPEQRAGL 255
L ++ + P PG+GMP + P RG+L +K++V +P L Q+ +
Sbjct: 115 TLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAI 169
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 80/134 (59%), Gaps = 4/134 (2%)
Query: 114 ANGRQTP-ESEILTIDVKPGWKKGTKITFPDKGNEQPNQLPADLVFVIDEKPHDVYKRDS 172
NG++ E +IL + V+PG K G +I F + ++ P+ +P D+VF++ E+PH +KRD
Sbjct: 102 CNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDG 161
Query: 173 NDLIVNHKVSLAEALGGTSVSLITLDGRDLNIAVT--DIISPGFELGIPGEGMPIAREPG 230
+DL+ ++ L A+ G +L + G L + + ++I+PG I G+GMPI + G
Sbjct: 162 DDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKY-G 220
Query: 231 NRGDLRIKFEVKFP 244
G+L IKF +K P
Sbjct: 221 GYGNLIIKFTIKDP 234
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 80 PRKPPPVESKLPCSLEELYSGSTRKMKISRTVV--DANGR 117
P++ ++ ++ SLEELY G T K+ +++ ++ + GR
Sbjct: 8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGR 47
>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain
pdb|1XAO|B Chain B, Hsp40-Ydj1 Dimerization Domain
Length = 121
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 168 YKRDSNDLIVNHKVSLAEALGGTSVSLITLDGRDLNIAVT--DIISPGFELGIPGEGMPI 225
+KRD +DL+ ++ L A+ G +L + G L + + ++I+PG I G+GMPI
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 226 AREPGNRGDLRIKFEVKFP 244
+ G G+L IKF +KFP
Sbjct: 62 PKY-GGYGNLIIKFTIKFP 79
>pdb|3U6U|A Chain A, Crystal Structure Of The Putative Acetylglutamate Kinase
From Thermus Thermophilus
pdb|3U6U|C Chain C, Crystal Structure Of The Putative Acetylglutamate Kinase
From Thermus Thermophilus
Length = 269
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 14/104 (13%)
Query: 111 VVDANGRQTPESEILTIDVKPGWKKGTKITFPDKGNEQPNQLPADLVF------------ 158
VV G + E + D WK+G K+ G+ + N++ L
Sbjct: 3 VVKVGGAEGINYEAVAKDAASLWKEGVKLLLVHGGSAETNKVAEALGHPPRFLTHPGGQV 62
Query: 159 --VIDEKPHDVYKRDSNDLIVNHKVSLAEALGGTSVSLITLDGR 200
+ D K ++++ L+ V L + G ++ L LDGR
Sbjct: 63 SRLTDRKTLEIFEMVYCGLVNKRLVELLQKEGANAIGLSGLDGR 106
>pdb|1RQW|A Chain A, Thaumatin Structure At 1.05 A Resolution
pdb|2A7I|X Chain X, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Y|A Chain A, Structure Of Thaumatin At 2.0 A Wavelength
pdb|1THU|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|1THW|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|3DZN|A Chain A, Thaumatin By Lb Nanotemplate Method Before High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZP|A Chain A, Thaumatin By Lb Nanotemplate Method After High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZR|A Chain A, Thaumatin By Classical Hanging Drop Method Before High
X-Ray Dose On Esrf Id29 Beamline
pdb|3E0A|A Chain A, Thaumatin By Classical Hanging Drop Method After High
X-Ray Dose On Esrf Id29 Beamline
pdb|4DIY|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DIZ|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DJ0|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4DJ1|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4EK0|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 25 K
pdb|4EKA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 25 K
pdb|4EKB|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 100 K
pdb|4EKH|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 100 K
pdb|4EKO|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 180 K
pdb|4EKT|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 180 K
pdb|4EL2|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 240 K
pdb|4EL3|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 240 K
pdb|4EL7|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 300 K
pdb|4ELA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 300 K
Length = 207
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 111 VVDANGRQTPESEILTIDVKPGWKKG-----TKITFPDKGN 146
+DA GRQ E TI+V+PG K G T F D G+
Sbjct: 23 ALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDDSGS 63
>pdb|3AOK|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin Ii
Length = 207
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 111 VVDANGRQTPESEILTIDVKPGWKKG-----TKITFPDKG 145
+DA GRQ E TI+V+PG K G T F D G
Sbjct: 23 ALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDDSG 62
>pdb|2D8O|A Chain A, Structure Of Vil-Thaumatin
Length = 207
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 111 VVDANGRQTPESEILTIDVKPG------WKKGTKITFPDKGN 146
+DA GRQ E TI+V+PG W + T F D G+
Sbjct: 23 ALDAGGRQLNSGESWTINVEPGTNGGKIWAR-TDCXFDDSGS 63
>pdb|2D8P|A Chain A, Structure Of Hyper-Vil-Thaumatin
Length = 207
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 111 VVDANGRQTPESEILTIDVKPG------WKKGTKITFPDKGN 146
+DA GRQ E TI+V+PG W + T F D G+
Sbjct: 23 ALDAGGRQLNSGESWTINVEPGTNGGKIWAR-TDCXFDDSGS 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,855,663
Number of Sequences: 62578
Number of extensions: 282571
Number of successful extensions: 460
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 437
Number of HSP's gapped (non-prelim): 19
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)