BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024881
         (261 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O82290|SKL2_ARATH Probable inactive shikimate kinase like 2, chloroplastic
           OS=Arabidopsis thaliana GN=SKL2 PE=2 SV=2
          Length = 387

 Score =  261 bits (667), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 142/245 (57%), Positives = 177/245 (72%), Gaps = 10/245 (4%)

Query: 3   AAAATYHHLSLSSISQNPISKSET-----QHFSSPRHSVSIFKPIFISSSLHKSTNVVPI 57
           AA A+   +  +S S NP++   T     +  SSPR   S F  +        S NV+P 
Sbjct: 2   AAFASGLAIIFNSPSLNPVTTQATFLSSNRIRSSPR-VFSGFHSLRRRGFRRFSQNVIPD 60

Query: 58  KTHDRRRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLT 117
           + +    F+C N LS++  +T  YEF+DG  E+ELRL+L + EI S KDI VDADGT L 
Sbjct: 61  RFNS---FSC-NCLSAVSTSTIDYEFTDGGKEVELRLRLKTGEILSPKDISVDADGTSLA 116

Query: 118 VRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLT 177
           V+  R+G  ITL+ETN LF+KI P+ETIWYIDEDQLV+N+KK D ELKWPDIVESWESLT
Sbjct: 117 VKEKRNGLLITLLETNHLFEKIMPSETIWYIDEDQLVVNMKKVDGELKWPDIVESWESLT 176

Query: 178 AGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEG 237
           AG MQLLKG SI++VGDSTE+N+KV+ ELAVGLGY+PL +KELLE+F+KQTIDSW+LAEG
Sbjct: 177 AGMMQLLKGASIYIVGDSTEINQKVSRELAVGLGYSPLDSKELLESFSKQTIDSWILAEG 236

Query: 238 SDSVV 242
            DSV 
Sbjct: 237 PDSVA 241


>sp|Q9NA80|SIN1_CAEEL Stress-activated map kinase-interacting protein 1 homolog
           OS=Caenorhabditis elegans GN=sinh-1 PE=3 SV=3
          Length = 642

 Score = 32.3 bits (72), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 16/97 (16%)

Query: 72  SSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTV--RVNRSGSFITL 129
           S +P     Y+F     + E+  +L  L+   S  +      TCL +  R+ ++G+    
Sbjct: 208 SYLPGEVDDYQFYLAEEDGEIEHELPPLD---SSKLVGQVGFTCLGLVSRIKKNGN---- 260

Query: 130 IETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKW 166
                   + K    +W++D+DQ VI +   +  L+W
Sbjct: 261 -------SRQKRAVAVWFVDKDQYVIEVDNMEKPLRW 290


>sp|Q3MFQ9|AROK_ANAVT Shikimate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC
           7937) GN=aroK PE=3 SV=1
          Length = 181

 Score = 31.6 bits (70), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 34/76 (44%)

Query: 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV 242
           LL+G +++L+G        V   LA  LGY  L T  ++   AK++I+      G     
Sbjct: 4   LLQGVNLYLIGMMGAGKTTVGHLLAQELGYGFLDTDNVIAQAAKKSINEIFAEAGEAGFR 63

Query: 243 NGECDVLESLIMFEPL 258
             E DVL  +  +  L
Sbjct: 64  QIESDVLAQVCSYTKL 79


>sp|Q5THJ4|VP13D_HUMAN Vacuolar protein sorting-associated protein 13D OS=Homo sapiens
           GN=VPS13D PE=1 SV=1
          Length = 4387

 Score = 31.2 bits (69), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 12/46 (26%), Positives = 25/46 (54%)

Query: 38  IFKPIFISSSLHKSTNVVPIKTHDRRRFTCSNSLSSIPANTSQYEF 83
           + +P+F S+ L ++ +  P+++    R  C   L +IP   SQ ++
Sbjct: 238 VLEPVFASALLKRNCSKKPLRSRHSPRIDCDIQLETIPLKLSQLQY 283


>sp|Q5N4D3|AROK_SYNP6 Shikimate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301
           / SAUG 1402/1) GN=aroK PE=3 SV=1
          Length = 190

 Score = 31.2 bits (69), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 33/76 (43%)

Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
           L G  +FLVG        +   LA  LGYT + T  L+E    ++I     ++G      
Sbjct: 7   LNGLDLFLVGLMGSGKTTIGKLLAESLGYTYVDTDSLIENVTGRSIPEIFASDGEAGFRQ 66

Query: 244 GECDVLESLIMFEPLL 259
            E  VLE +  +  L+
Sbjct: 67  IETQVLEEVASYRRLV 82


>sp|Q31PU5|AROK_SYNE7 Shikimate kinase OS=Synechococcus elongatus (strain PCC 7942)
           GN=aroK PE=3 SV=1
          Length = 190

 Score = 31.2 bits (69), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 33/76 (43%)

Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
           L G  +FLVG        +   LA  LGYT + T  L+E    ++I     ++G      
Sbjct: 7   LNGLDLFLVGLMGSGKTTIGKLLAESLGYTYVDTDSLIENVTGRSIPEIFASDGEAGFRQ 66

Query: 244 GECDVLESLIMFEPLL 259
            E  VLE +  +  L+
Sbjct: 67  IETQVLEEVASYRRLV 82


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.129    0.364 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,634,001
Number of Sequences: 539616
Number of extensions: 3404797
Number of successful extensions: 7215
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 7210
Number of HSP's gapped (non-prelim): 14
length of query: 261
length of database: 191,569,459
effective HSP length: 115
effective length of query: 146
effective length of database: 129,513,619
effective search space: 18908988374
effective search space used: 18908988374
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)