Query 024881
Match_columns 261
No_of_seqs 102 out of 108
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 08:08:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0703 AroK Shikimate kinase 99.9 7.2E-27 1.6E-31 201.5 8.3 73 186-258 2-74 (172)
2 cd06492 p23_mNUDC_like p23-lik 99.9 3.7E-25 7.9E-30 170.1 9.1 86 81-177 1-87 (87)
3 cd06495 p23_NUDCD3_like p23-li 99.9 8.4E-25 1.8E-29 174.1 10.4 92 76-180 2-97 (102)
4 cd06494 p23_NUDCD2_like p23-li 99.9 7.7E-24 1.7E-28 165.6 9.4 89 74-176 1-92 (93)
5 KOG2265 Nuclear distribution p 99.9 1.1E-23 2.4E-28 183.2 8.0 97 73-181 13-110 (179)
6 PRK13948 shikimate kinase; Pro 99.9 3.9E-22 8.5E-27 170.5 7.6 74 184-257 8-81 (182)
7 PLN02199 shikimate kinase 99.9 1.1E-21 2.3E-26 181.9 9.2 82 177-258 93-175 (303)
8 PRK14021 bifunctional shikimat 99.8 5.6E-21 1.2E-25 185.8 7.6 71 187-257 7-77 (542)
9 PRK00625 shikimate kinase; Pro 99.8 2.1E-20 4.5E-25 158.3 7.8 68 187-254 1-72 (173)
10 cd06493 p23_NUDCD1_like p23_NU 99.8 8.5E-20 1.8E-24 137.7 8.7 84 81-177 1-85 (85)
11 PRK13949 shikimate kinase; Pro 99.8 6.2E-19 1.3E-23 147.4 7.8 71 187-257 2-72 (169)
12 PRK13947 shikimate kinase; Pro 99.8 6.2E-19 1.3E-23 142.4 7.1 70 188-257 3-72 (171)
13 PF01202 SKI: Shikimate kinase 99.8 3.2E-19 6.9E-24 145.9 4.9 63 195-257 1-63 (158)
14 PRK13946 shikimate kinase; Pro 99.7 3E-18 6.5E-23 143.3 8.1 75 183-257 7-81 (184)
15 cd06467 p23_NUDC_like p23_like 99.7 4E-17 8.7E-22 120.5 9.1 79 81-166 1-80 (85)
16 PRK00131 aroK shikimate kinase 99.7 2.8E-17 6E-22 130.8 8.2 75 183-257 1-75 (175)
17 PRK05057 aroK shikimate kinase 99.7 2.5E-17 5.5E-22 137.5 7.1 73 184-256 2-74 (172)
18 PRK03731 aroL shikimate kinase 99.7 9.7E-17 2.1E-21 130.4 7.5 68 187-254 3-70 (171)
19 PRK13951 bifunctional shikimat 99.7 7.7E-17 1.7E-21 156.0 7.3 71 187-257 1-71 (488)
20 cd06468 p23_CacyBP p23_like do 99.6 1.3E-15 2.8E-20 114.7 10.0 90 79-176 2-91 (92)
21 PRK08154 anaerobic benzoate ca 99.6 4.6E-16 1E-20 141.2 8.8 86 169-254 116-201 (309)
22 cd00464 SK Shikimate kinase (S 99.6 8.1E-16 1.7E-20 121.1 7.5 70 188-257 1-70 (154)
23 PF04969 CS: CS domain; Inter 99.6 6.6E-15 1.4E-19 104.8 10.6 79 79-159 1-79 (79)
24 cd06463 p23_like Proteins cont 99.5 4.9E-14 1.1E-18 100.5 8.8 83 83-176 1-83 (84)
25 cd06465 p23_hB-ind1_like p23_l 99.5 7.2E-14 1.6E-18 109.1 9.2 87 80-179 2-89 (108)
26 PRK09169 hypothetical protein; 99.5 1.8E-14 4E-19 158.0 7.8 76 179-256 2103-2178(2316)
27 PRK03839 putative kinase; Prov 99.5 1.6E-14 3.5E-19 118.8 3.7 62 188-252 2-63 (180)
28 cd06466 p23_CS_SGT1_like p23_l 99.4 4.1E-12 9E-17 93.1 9.0 81 82-167 1-81 (84)
29 cd06469 p23_DYX1C1_like p23_li 99.3 1.6E-11 3.4E-16 89.4 8.0 71 83-162 1-71 (78)
30 PRK14532 adenylate kinase; Pro 99.2 1.2E-11 2.6E-16 102.2 5.2 66 187-253 1-72 (188)
31 cd06489 p23_CS_hSgt1_like p23_ 99.2 7.4E-11 1.6E-15 88.2 8.9 83 82-169 1-83 (84)
32 PRK04182 cytidylate kinase; Pr 99.2 6E-11 1.3E-15 95.4 7.4 61 188-249 2-68 (180)
33 PRK14530 adenylate kinase; Pro 99.1 8E-11 1.7E-15 100.4 5.5 70 184-253 1-79 (215)
34 PRK10078 ribose 1,5-bisphospho 99.0 8.3E-11 1.8E-15 98.3 -0.3 67 185-251 1-67 (186)
35 PRK06217 hypothetical protein; 98.9 6.1E-10 1.3E-14 92.8 3.6 62 187-254 2-63 (183)
36 PRK13975 thymidylate kinase; P 98.9 7.9E-10 1.7E-14 91.3 4.2 65 186-250 2-78 (196)
37 PRK01184 hypothetical protein; 98.8 4.7E-09 1E-13 86.6 4.4 58 188-246 3-61 (184)
38 PLN02674 adenylate kinase 98.8 1.8E-08 3.8E-13 91.0 7.6 71 184-255 29-105 (244)
39 cd06488 p23_melusin_like p23_l 98.8 7.7E-08 1.7E-12 73.3 9.5 84 80-168 2-85 (87)
40 TIGR02173 cyt_kin_arch cytidyl 98.7 4.8E-08 1E-12 78.2 8.1 45 188-232 2-49 (171)
41 TIGR01313 therm_gnt_kin carboh 98.7 7.9E-09 1.7E-13 83.5 3.4 64 189-255 1-70 (163)
42 TIGR01359 UMP_CMP_kin_fam UMP- 98.7 1.7E-08 3.6E-13 82.6 5.2 65 189-254 2-72 (183)
43 cd01428 ADK Adenylate kinase ( 98.7 1.5E-08 3.2E-13 82.9 4.6 63 188-251 1-69 (194)
44 PTZ00088 adenylate kinase 1; P 98.7 2.6E-08 5.7E-13 88.4 6.1 69 182-251 2-80 (229)
45 PF13207 AAA_17: AAA domain; P 98.7 1.3E-08 2.7E-13 77.8 3.5 33 189-221 2-34 (121)
46 PLN02165 adenylate isopentenyl 98.7 2.6E-08 5.7E-13 94.1 6.2 76 182-257 39-134 (334)
47 cd00298 ACD_sHsps_p23-like Thi 98.7 1.1E-07 2.3E-12 65.5 7.5 71 83-159 1-80 (80)
48 cd02021 GntK Gluconate kinase 98.7 1.8E-08 3.8E-13 80.2 4.0 62 189-253 2-69 (150)
49 TIGR03575 selen_PSTK_euk L-ser 98.6 2.7E-08 5.8E-13 93.8 4.8 57 189-250 2-69 (340)
50 PTZ00322 6-phosphofructo-2-kin 98.6 1E-08 2.2E-13 102.4 1.4 69 186-254 215-284 (664)
51 PRK03333 coaE dephospho-CoA ki 98.6 6.7E-08 1.5E-12 91.6 6.6 51 188-239 3-56 (395)
52 PRK00081 coaE dephospho-CoA ki 98.6 4.3E-08 9.2E-13 83.4 4.2 54 188-242 4-60 (194)
53 PRK14733 coaE dephospho-CoA ki 98.6 7.5E-08 1.6E-12 84.7 5.5 55 187-241 7-63 (204)
54 PRK05541 adenylylsulfate kinas 98.6 7.2E-08 1.6E-12 79.2 4.8 54 185-247 6-64 (176)
55 PRK00279 adk adenylate kinase; 98.5 9E-08 1.9E-12 81.8 5.0 65 187-252 1-71 (215)
56 PRK02496 adk adenylate kinase; 98.5 1.3E-07 2.9E-12 78.2 5.6 66 187-253 2-73 (184)
57 cd02020 CMPK Cytidine monophos 98.5 9.1E-08 2E-12 74.4 4.1 65 189-256 2-66 (147)
58 PHA02530 pseT polynucleotide k 98.5 1.2E-07 2.6E-12 83.6 5.0 67 187-253 3-72 (300)
59 cd00237 p23 p23 binds heat sho 98.5 1E-06 2.2E-11 70.6 9.7 87 79-179 2-89 (106)
60 PRK05537 bifunctional sulfate 98.5 9.1E-08 2E-12 95.0 4.4 69 172-251 377-452 (568)
61 PF13671 AAA_33: AAA domain; P 98.5 1E-07 2.2E-12 74.3 3.6 38 189-226 2-39 (143)
62 TIGR01360 aden_kin_iso1 adenyl 98.5 2E-07 4.3E-12 75.7 5.3 48 187-234 4-57 (188)
63 TIGR03574 selen_PSTK L-seryl-t 98.5 2.2E-07 4.7E-12 81.1 5.5 62 189-256 2-68 (249)
64 cd02022 DPCK Dephospho-coenzym 98.5 1.7E-07 3.6E-12 78.4 4.3 51 189-240 2-55 (179)
65 PRK06547 hypothetical protein; 98.4 1.6E-07 3.5E-12 79.8 4.1 55 189-243 18-77 (172)
66 PRK08118 topology modulation p 98.4 2.5E-07 5.5E-12 77.5 5.0 36 188-223 3-38 (167)
67 TIGR00152 dephospho-CoA kinase 98.4 2.7E-07 5.8E-12 77.2 4.7 39 189-227 2-40 (188)
68 TIGR00390 hslU ATP-dependent p 98.4 1.7E-07 3.7E-12 91.6 4.1 62 185-246 46-110 (441)
69 PRK14730 coaE dephospho-CoA ki 98.3 6.4E-07 1.4E-11 76.9 5.3 39 188-226 3-41 (195)
70 PRK14531 adenylate kinase; Pro 98.3 7E-07 1.5E-11 74.7 5.0 37 188-224 4-40 (183)
71 PRK14526 adenylate kinase; Pro 98.3 1.4E-06 3.1E-11 76.3 5.8 62 187-249 1-68 (211)
72 PLN03088 SGT1, suppressor of 98.2 6.7E-06 1.5E-10 76.4 9.8 83 79-166 157-239 (356)
73 TIGR01351 adk adenylate kinase 98.2 2.4E-06 5.2E-11 72.8 5.5 37 188-224 1-37 (210)
74 cd00227 CPT Chloramphenicol (C 98.2 2E-06 4.3E-11 71.2 4.3 41 185-225 1-43 (175)
75 PRK00023 cmk cytidylate kinase 98.1 2.8E-06 6.1E-11 74.6 4.6 38 185-222 3-40 (225)
76 PRK14527 adenylate kinase; Pro 98.1 5E-06 1.1E-10 69.7 5.8 40 185-224 5-44 (191)
77 PRK00889 adenylylsulfate kinas 98.1 2.1E-06 4.5E-11 70.6 3.3 41 185-225 3-48 (175)
78 PRK11860 bifunctional 3-phosph 98.1 2.1E-06 4.6E-11 86.0 3.6 58 165-224 423-480 (661)
79 PRK07261 topology modulation p 98.1 1.9E-06 4E-11 72.3 2.3 35 187-221 1-35 (171)
80 PRK14529 adenylate kinase; Pro 98.1 5.8E-06 1.3E-10 73.8 5.2 65 187-252 1-71 (223)
81 PLN02200 adenylate kinase fami 98.0 4.5E-06 9.8E-11 74.0 4.4 39 185-223 42-80 (234)
82 PRK13808 adenylate kinase; Pro 98.0 7.4E-06 1.6E-10 77.5 6.1 49 187-235 1-55 (333)
83 KOG3354 Gluconate kinase [Carb 98.0 2.6E-06 5.5E-11 75.5 2.8 40 185-225 12-56 (191)
84 PF00406 ADK: Adenylate kinase 98.0 3.8E-06 8.3E-11 67.7 3.5 35 191-225 1-35 (151)
85 PRK14528 adenylate kinase; Pro 98.0 1.2E-05 2.5E-10 68.2 6.4 39 187-225 2-40 (186)
86 PRK04040 adenylate kinase; Pro 98.0 8.2E-06 1.8E-10 70.0 5.5 40 186-225 2-43 (188)
87 COG0563 Adk Adenylate kinase a 98.0 4.5E-06 9.8E-11 71.7 3.9 41 187-227 1-41 (178)
88 PRK06762 hypothetical protein; 98.0 6.1E-06 1.3E-10 66.9 4.1 40 186-225 2-43 (166)
89 PRK14734 coaE dephospho-CoA ki 98.0 1.1E-05 2.4E-10 69.5 6.0 53 188-241 3-58 (200)
90 PRK05201 hslU ATP-dependent pr 98.0 6.8E-06 1.5E-10 80.7 5.1 68 186-253 50-136 (443)
91 PLN02459 probable adenylate ki 98.0 6.8E-06 1.5E-10 75.5 4.2 51 187-238 30-86 (261)
92 TIGR00017 cmk cytidylate kinas 98.0 4.3E-06 9.3E-11 73.5 2.6 38 187-224 3-40 (217)
93 PF01121 CoaE: Dephospho-CoA k 98.0 1E-05 2.2E-10 69.7 4.8 53 188-241 2-57 (180)
94 PF00004 AAA: ATPase family as 97.9 3E-06 6.6E-11 64.2 1.3 33 189-221 1-35 (132)
95 PF13238 AAA_18: AAA domain; P 97.9 3.5E-06 7.5E-11 63.6 1.5 22 189-210 1-22 (129)
96 PTZ00451 dephospho-CoA kinase; 97.9 1.3E-05 2.9E-10 72.4 5.3 39 188-226 3-41 (244)
97 PF13189 Cytidylate_kin2: Cyti 97.9 8.8E-06 1.9E-10 68.7 3.5 38 189-227 2-39 (179)
98 PRK09825 idnK D-gluconate kina 97.9 9.5E-06 2.1E-10 68.7 2.9 37 184-220 1-37 (176)
99 COG0237 CoaE Dephospho-CoA kin 97.9 1.4E-05 3.1E-10 70.3 4.0 37 188-225 4-40 (201)
100 COG3265 GntK Gluconate kinase 97.8 7.9E-06 1.7E-10 71.2 1.6 33 193-225 2-39 (161)
101 PLN02422 dephospho-CoA kinase 97.8 2.9E-05 6.3E-10 69.9 5.1 53 188-241 3-58 (232)
102 COG0283 Cmk Cytidylate kinase 97.7 2.8E-05 6.2E-10 70.6 4.3 39 187-225 5-43 (222)
103 PRK11545 gntK gluconate kinase 97.7 1.2E-05 2.6E-10 66.9 1.6 29 192-220 1-29 (163)
104 PRK09518 bifunctional cytidyla 97.7 1.7E-05 3.7E-10 80.2 2.8 39 187-225 2-40 (712)
105 TIGR02322 phosphon_PhnN phosph 97.7 1.9E-05 4.1E-10 64.8 2.6 27 186-212 1-27 (179)
106 TIGR00150 HI0065_YjeE ATPase, 97.7 6.1E-05 1.3E-09 62.9 5.0 53 172-224 7-63 (133)
107 PRK03846 adenylylsulfate kinas 97.7 2.7E-05 6E-10 65.9 2.9 41 185-225 23-68 (198)
108 smart00382 AAA ATPases associa 97.7 4.7E-05 1E-09 55.3 3.4 29 185-213 1-29 (148)
109 COG1102 Cmk Cytidylate kinase 97.6 4.7E-05 1E-09 67.3 4.0 45 188-232 2-49 (179)
110 PRK14731 coaE dephospho-CoA ki 97.6 7.8E-05 1.7E-09 64.3 5.2 38 188-226 7-44 (208)
111 PRK13477 bifunctional pantoate 97.6 2.3E-05 5E-10 77.8 1.9 41 185-225 283-323 (512)
112 TIGR02640 gas_vesic_GvpN gas v 97.6 8.2E-05 1.8E-09 66.3 5.1 44 183-226 18-69 (262)
113 PRK12339 2-phosphoglycerate ki 97.6 7.7E-05 1.7E-09 65.0 4.5 42 185-226 2-44 (197)
114 TIGR00041 DTMP_kinase thymidyl 97.6 9.1E-05 2E-09 61.2 4.4 31 185-215 2-35 (195)
115 PRK14732 coaE dephospho-CoA ki 97.5 9.5E-05 2.1E-09 64.0 4.5 52 189-241 2-56 (196)
116 cd01672 TMPK Thymidine monopho 97.5 2.2E-05 4.8E-10 63.5 0.1 30 189-218 3-35 (200)
117 PRK12338 hypothetical protein; 97.5 0.00011 2.5E-09 69.3 4.5 42 185-226 3-45 (319)
118 PRK10646 ADP-binding protein; 97.5 0.00016 3.5E-09 61.9 5.0 42 171-212 12-54 (153)
119 PRK00300 gmk guanylate kinase; 97.5 0.00016 3.4E-09 60.5 4.7 27 185-211 4-30 (205)
120 PF07728 AAA_5: AAA domain (dy 97.5 0.0001 2.2E-09 58.0 3.2 27 188-214 1-27 (139)
121 PRK12269 bifunctional cytidyla 97.4 0.00013 2.7E-09 76.6 4.5 42 184-225 32-73 (863)
122 PF02367 UPF0079: Uncharacteri 97.4 0.00023 5E-09 58.8 5.2 38 176-213 4-42 (123)
123 PRK08356 hypothetical protein; 97.4 0.0001 2.3E-09 62.3 2.8 33 187-220 6-38 (195)
124 PF01583 APS_kinase: Adenylyls 97.4 0.0001 2.2E-09 63.1 2.6 40 185-224 1-45 (156)
125 cd06490 p23_NCB5OR p23_like do 97.3 0.0019 4.1E-08 49.6 8.9 83 81-168 1-85 (87)
126 cd02019 NK Nucleoside/nucleoti 97.3 0.00017 3.6E-09 52.5 2.6 29 189-217 2-33 (69)
127 COG0645 Predicted kinase [Gene 97.3 0.0003 6.4E-09 61.8 4.4 63 189-253 4-66 (170)
128 cd00009 AAA The AAA+ (ATPases 97.2 0.00042 9.2E-09 51.3 4.2 32 186-217 19-53 (151)
129 TIGR01650 PD_CobS cobaltochela 97.2 0.00038 8.3E-09 66.0 4.8 40 173-215 54-93 (327)
130 TIGR01663 PNK-3'Pase polynucle 97.2 0.00046 1E-08 68.9 5.5 34 187-220 370-403 (526)
131 KOG4379 Uncharacterized conser 97.2 0.0005 1.1E-08 68.8 5.6 84 79-169 290-374 (596)
132 PRK08233 hypothetical protein; 97.2 0.00032 6.9E-09 56.8 3.4 28 185-212 2-29 (182)
133 TIGR03263 guanyl_kin guanylate 97.2 0.00034 7.4E-09 57.2 3.5 26 186-211 1-26 (180)
134 KOG1309 Suppressor of G2 allel 97.2 0.0012 2.7E-08 59.1 7.2 83 79-166 4-86 (196)
135 PHA00729 NTP-binding motif con 97.1 0.00034 7.4E-09 63.3 3.3 39 187-225 18-74 (226)
136 cd02027 APSK Adenosine 5'-phos 97.1 0.00041 8.9E-09 56.9 3.5 37 189-225 2-43 (149)
137 TIGR03689 pup_AAA proteasome A 97.1 0.0025 5.4E-08 63.7 8.8 99 111-213 116-243 (512)
138 TIGR02880 cbbX_cfxQ probable R 97.1 0.00054 1.2E-08 62.2 3.8 44 185-228 57-109 (284)
139 cd00071 GMPK Guanosine monopho 97.0 0.00063 1.4E-08 55.3 3.7 22 189-210 2-23 (137)
140 KOG3347 Predicted nucleotide k 97.0 0.0006 1.3E-08 60.2 3.6 39 185-223 6-44 (176)
141 PRK05480 uridine/cytidine kina 97.0 0.00032 7E-09 59.4 1.9 39 185-223 5-46 (209)
142 TIGR00455 apsK adenylylsulfate 97.0 0.00073 1.6E-08 56.1 3.7 41 184-224 16-61 (184)
143 PRK08903 DnaA regulatory inact 97.0 0.00091 2E-08 57.2 4.3 71 152-223 4-84 (227)
144 PRK04220 2-phosphoglycerate ki 97.0 0.0012 2.5E-08 62.1 5.3 41 185-225 91-132 (301)
145 CHL00181 cbbX CbbX; Provisiona 97.0 0.00071 1.5E-08 61.9 3.7 44 185-228 58-110 (287)
146 PRK06761 hypothetical protein; 97.0 0.00039 8.5E-09 64.4 2.0 37 186-222 3-39 (282)
147 COG1936 Predicted nucleotide k 97.0 0.00082 1.8E-08 59.7 3.9 37 187-224 1-37 (180)
148 PTZ00361 26 proteosome regulat 96.9 0.0062 1.3E-07 59.6 10.1 44 185-228 216-261 (438)
149 PLN02842 nucleotide kinase 96.9 0.001 2.2E-08 66.5 4.7 48 191-239 2-55 (505)
150 COG0802 Predicted ATPase or ki 96.9 0.0012 2.6E-08 56.9 4.6 36 176-211 14-50 (149)
151 PRK00698 tmk thymidylate kinas 96.9 0.00087 1.9E-08 55.4 3.2 26 185-210 2-27 (205)
152 TIGR02881 spore_V_K stage V sp 96.9 0.0012 2.6E-08 58.3 4.3 26 185-210 41-66 (261)
153 PRK05506 bifunctional sulfate 96.9 0.00046 9.9E-09 68.9 1.7 40 186-225 460-504 (632)
154 cd01673 dNK Deoxyribonucleosid 96.8 0.00097 2.1E-08 55.4 3.3 30 189-218 2-31 (193)
155 COG0466 Lon ATP-dependent Lon 96.8 0.0011 2.3E-08 69.2 3.8 37 179-215 343-379 (782)
156 TIGR01526 nadR_NMN_Atrans nico 96.8 0.0012 2.7E-08 61.3 3.8 45 171-216 148-192 (325)
157 PRK12402 replication factor C 96.7 0.0015 3.3E-08 57.9 3.8 62 158-221 7-78 (337)
158 TIGR00235 udk uridine kinase. 96.7 0.0011 2.4E-08 56.4 2.8 37 185-221 5-44 (207)
159 PF06414 Zeta_toxin: Zeta toxi 96.7 0.00094 2E-08 56.7 2.3 38 185-222 14-54 (199)
160 cd02024 NRK1 Nicotinamide ribo 96.6 0.0012 2.6E-08 57.5 2.5 35 189-223 2-37 (187)
161 KOG3260 Calcyclin-binding prot 96.6 0.0054 1.2E-07 55.6 6.6 83 78-166 74-158 (224)
162 PRK00091 miaA tRNA delta(2)-is 96.6 0.0015 3.2E-08 61.0 3.1 35 186-220 4-38 (307)
163 PRK05342 clpX ATP-dependent pr 96.6 0.0018 4E-08 62.6 3.6 35 185-219 107-141 (412)
164 PRK12337 2-phosphoglycerate ki 96.6 0.0025 5.5E-08 63.4 4.5 43 185-227 254-297 (475)
165 TIGR01241 FtsH_fam ATP-depende 96.6 0.0036 7.8E-08 60.6 5.4 41 187-227 89-131 (495)
166 COG0714 MoxR-like ATPases [Gen 96.6 0.0029 6.3E-08 57.9 4.5 40 176-215 33-72 (329)
167 KOG0733 Nuclear AAA ATPase (VC 96.5 0.0038 8.2E-08 64.8 5.7 68 188-255 225-316 (802)
168 PRK03992 proteasome-activating 96.5 0.0026 5.6E-08 60.3 4.1 40 187-226 166-207 (389)
169 TIGR03015 pepcterm_ATPase puta 96.5 0.0044 9.6E-08 53.4 5.2 24 188-211 45-68 (269)
170 TIGR01243 CDC48 AAA family ATP 96.5 0.0029 6.4E-08 64.2 4.7 49 186-234 487-540 (733)
171 PRK06696 uridine kinase; Valid 96.5 0.0076 1.6E-07 52.2 6.4 34 188-221 24-62 (223)
172 TIGR03420 DnaA_homol_Hda DnaA 96.5 0.0022 4.8E-08 53.9 3.0 38 185-222 37-79 (226)
173 KOG1970 Checkpoint RAD17-RFC c 96.5 0.0023 5E-08 65.3 3.6 70 133-215 70-139 (634)
174 PHA02244 ATPase-like protein 96.5 0.0019 4.2E-08 62.8 2.8 70 153-222 75-155 (383)
175 PF01695 IstB_IS21: IstB-like 96.5 0.0035 7.5E-08 53.5 4.1 42 185-226 46-92 (178)
176 COG1124 DppF ABC-type dipeptid 96.5 0.0024 5.1E-08 59.3 3.3 49 152-210 8-57 (252)
177 PF00625 Guanylate_kin: Guanyl 96.4 0.0032 7E-08 52.5 3.8 27 185-211 1-27 (183)
178 PF13521 AAA_28: AAA domain; P 96.4 0.0021 4.4E-08 52.4 2.6 27 188-215 1-27 (163)
179 PRK09183 transposase/IS protei 96.4 0.003 6.6E-08 56.8 3.9 41 184-224 100-145 (259)
180 PRK05416 glmZ(sRNA)-inactivati 96.4 0.0021 4.5E-08 59.5 2.9 31 187-218 7-37 (288)
181 PRK13973 thymidylate kinase; P 96.4 0.00099 2.1E-08 57.5 0.7 34 184-217 1-37 (213)
182 PF13191 AAA_16: AAA ATPase do 96.4 0.0022 4.9E-08 51.4 2.7 40 173-212 9-50 (185)
183 PF00485 PRK: Phosphoribulokin 96.4 0.0026 5.6E-08 53.7 3.2 23 189-211 2-24 (194)
184 TIGR01242 26Sp45 26S proteasom 96.4 0.0045 9.7E-08 57.4 4.7 42 186-227 156-199 (364)
185 PRK08181 transposase; Validate 96.4 0.0046 9.9E-08 56.7 4.7 41 185-225 105-150 (269)
186 cd02023 UMPK Uridine monophosp 96.4 0.0019 4.2E-08 54.1 2.1 38 189-226 2-42 (198)
187 PTZ00454 26S protease regulato 96.4 0.0027 5.8E-08 61.0 3.3 43 185-227 178-222 (398)
188 COG1484 DnaC DNA replication p 96.4 0.0077 1.7E-07 54.4 6.0 55 171-225 90-149 (254)
189 TIGR00635 ruvB Holliday juncti 96.4 0.0045 9.7E-08 54.9 4.4 28 187-214 31-58 (305)
190 PLN02772 guanylate kinase 96.3 0.0079 1.7E-07 58.8 6.2 121 61-210 19-159 (398)
191 PRK04195 replication factor C 96.3 0.0034 7.3E-08 60.8 3.7 32 186-217 39-70 (482)
192 PF00011 HSP20: Hsp20/alpha cr 96.3 0.041 8.9E-07 41.8 8.9 74 83-162 2-90 (102)
193 KOG2004 Mitochondrial ATP-depe 96.3 0.0027 5.9E-08 66.6 3.2 36 180-215 432-467 (906)
194 PLN02748 tRNA dimethylallyltra 96.3 0.0029 6.3E-08 62.6 3.2 35 185-219 21-55 (468)
195 TIGR00174 miaA tRNA isopenteny 96.3 0.0029 6.2E-08 58.9 2.9 31 189-219 2-32 (287)
196 PRK05800 cobU adenosylcobinami 96.3 0.004 8.6E-08 53.0 3.5 32 186-217 1-34 (170)
197 PF13173 AAA_14: AAA domain 96.3 0.006 1.3E-07 48.3 4.2 38 186-223 2-43 (128)
198 PRK08099 bifunctional DNA-bind 96.3 0.004 8.6E-08 59.9 3.8 54 170-224 204-259 (399)
199 cd03115 SRP The signal recogni 96.3 0.0044 9.6E-08 50.7 3.5 30 189-218 3-37 (173)
200 TIGR00382 clpX endopeptidase C 96.2 0.0036 7.8E-08 60.9 3.4 32 185-216 115-146 (413)
201 cd02030 NDUO42 NADH:Ubiquinone 96.2 0.0037 8.1E-08 54.2 3.2 27 189-215 2-28 (219)
202 cd04177 RSR1 RSR1 subgroup. R 96.2 0.0013 2.8E-08 52.8 0.1 62 188-251 3-72 (168)
203 PLN02840 tRNA dimethylallyltra 96.2 0.0034 7.3E-08 61.6 3.0 41 179-219 14-54 (421)
204 PRK14738 gmk guanylate kinase; 96.2 0.0046 1E-07 53.3 3.4 27 183-209 10-36 (206)
205 PRK06526 transposase; Provisio 96.2 0.007 1.5E-07 54.7 4.8 41 185-225 97-142 (254)
206 PRK14737 gmk guanylate kinase; 96.2 0.0069 1.5E-07 52.1 4.4 69 185-254 3-111 (186)
207 smart00072 GuKc Guanylate kina 96.1 0.0044 9.5E-08 52.0 3.1 26 185-210 1-26 (184)
208 TIGR01243 CDC48 AAA family ATP 96.1 0.0044 9.6E-08 62.9 3.6 38 186-223 212-251 (733)
209 PRK10733 hflB ATP-dependent me 96.1 0.0041 8.9E-08 62.9 3.3 40 187-226 186-227 (644)
210 PF05496 RuvB_N: Holliday junc 96.1 0.0045 9.8E-08 56.8 3.2 30 188-217 52-81 (233)
211 PF07931 CPT: Chloramphenicol 96.1 0.0069 1.5E-07 52.5 4.2 70 186-255 1-79 (174)
212 COG0529 CysC Adenylylsulfate k 96.1 0.0046 1E-07 55.7 3.1 50 175-224 9-66 (197)
213 cd06472 ACD_ScHsp26_like Alpha 96.1 0.045 9.8E-07 41.7 7.9 73 81-159 2-92 (92)
214 PRK09087 hypothetical protein; 96.0 0.0032 7E-08 55.6 1.8 35 188-222 46-80 (226)
215 COG0071 IbpA Molecular chapero 96.0 0.07 1.5E-06 44.2 9.6 81 76-162 38-135 (146)
216 PRK00440 rfc replication facto 96.0 0.007 1.5E-07 53.2 3.9 51 158-210 9-62 (319)
217 PRK13695 putative NTPase; Prov 96.0 0.0055 1.2E-07 50.6 2.9 28 187-214 1-31 (174)
218 PRK07667 uridine kinase; Provi 96.0 0.0062 1.3E-07 51.9 3.1 35 188-222 19-58 (193)
219 CHL00176 ftsH cell division pr 95.9 0.0072 1.6E-07 61.6 4.0 38 187-224 217-256 (638)
220 PRK11331 5-methylcytosine-spec 95.9 0.0064 1.4E-07 60.3 3.6 32 180-211 188-219 (459)
221 PLN03025 replication factor C 95.9 0.0077 1.7E-07 54.9 3.8 51 158-210 5-58 (319)
222 PF00005 ABC_tran: ABC transpo 95.9 0.0068 1.5E-07 47.2 2.9 28 183-210 8-35 (137)
223 cd02028 UMPK_like Uridine mono 95.9 0.0053 1.2E-07 52.0 2.5 34 189-222 2-40 (179)
224 COG4608 AppF ABC-type oligopep 95.9 0.0062 1.3E-07 56.8 3.1 30 182-211 35-64 (268)
225 KOG3158 HSP90 co-chaperone p23 95.9 0.026 5.7E-07 50.3 6.8 88 80-179 9-96 (180)
226 PRK13342 recombination factor 95.8 0.011 2.3E-07 56.2 4.4 33 185-217 35-67 (413)
227 PF13401 AAA_22: AAA domain; P 95.8 0.0081 1.8E-07 46.0 3.0 25 186-210 4-28 (131)
228 TIGR02639 ClpA ATP-dependent C 95.8 0.0092 2E-07 60.9 4.2 36 186-221 203-250 (731)
229 TIGR00763 lon ATP-dependent pr 95.8 0.0076 1.6E-07 62.0 3.4 32 184-215 345-376 (775)
230 COG1428 Deoxynucleoside kinase 95.8 0.0064 1.4E-07 55.3 2.6 47 187-238 5-51 (216)
231 TIGR00960 3a0501s02 Type II (G 95.7 0.0084 1.8E-07 50.8 3.0 29 182-210 25-53 (216)
232 PF05729 NACHT: NACHT domain 95.7 0.0083 1.8E-07 46.8 2.7 25 188-212 2-26 (166)
233 PRK00080 ruvB Holliday junctio 95.7 0.0085 1.8E-07 54.7 3.1 29 187-215 52-80 (328)
234 PRK12377 putative replication 95.7 0.013 2.9E-07 53.1 4.3 40 186-225 101-145 (248)
235 cd03261 ABC_Org_Solvent_Resist 95.7 0.0088 1.9E-07 51.4 3.0 29 182-210 22-50 (235)
236 cd06464 ACD_sHsps-like Alpha-c 95.7 0.081 1.8E-06 38.1 7.6 70 84-159 3-88 (88)
237 TIGR02673 FtsE cell division A 95.7 0.0094 2E-07 50.3 3.0 29 182-210 24-52 (214)
238 cd03258 ABC_MetN_methionine_tr 95.6 0.0088 1.9E-07 51.2 2.8 29 182-210 27-55 (233)
239 TIGR03499 FlhF flagellar biosy 95.6 0.016 3.5E-07 52.7 4.6 48 172-219 169-234 (282)
240 cd03259 ABC_Carb_Solutes_like 95.6 0.01 2.2E-07 50.2 3.0 29 182-210 22-50 (213)
241 PF03266 NTPase_1: NTPase; In 95.6 0.0093 2E-07 50.8 2.8 23 188-210 1-23 (168)
242 cd03112 CobW_like The function 95.6 0.018 3.8E-07 47.8 4.4 22 189-210 3-24 (158)
243 smart00763 AAA_PrkA PrkA AAA d 95.6 0.014 3E-07 56.4 4.3 26 187-212 79-104 (361)
244 cd03292 ABC_FtsE_transporter F 95.6 0.011 2.3E-07 49.8 3.0 29 182-210 23-51 (214)
245 cd03225 ABC_cobalt_CbiO_domain 95.6 0.011 2.3E-07 49.9 3.0 29 182-210 23-51 (211)
246 PF03215 Rad17: Rad17 cell cyc 95.6 0.0026 5.7E-08 63.4 -0.7 57 151-216 19-75 (519)
247 cd01130 VirB11-like_ATPase Typ 95.6 0.012 2.5E-07 49.7 3.2 26 185-210 24-49 (186)
248 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.6 0.011 2.4E-07 50.0 3.1 29 182-210 26-54 (218)
249 PRK08939 primosomal protein Dn 95.5 0.016 3.4E-07 53.8 4.3 41 185-225 155-200 (306)
250 CHL00195 ycf46 Ycf46; Provisio 95.5 0.0091 2E-07 59.1 2.9 33 186-218 259-291 (489)
251 cd03293 ABC_NrtD_SsuB_transpor 95.5 0.011 2.4E-07 50.3 3.0 29 182-210 26-54 (220)
252 cd03269 ABC_putative_ATPase Th 95.5 0.011 2.5E-07 49.8 3.0 29 182-210 22-50 (210)
253 PF00910 RNA_helicase: RNA hel 95.5 0.009 2E-07 46.5 2.2 66 189-255 1-80 (107)
254 TIGR03608 L_ocin_972_ABC putat 95.5 0.012 2.5E-07 49.3 3.0 29 182-210 20-48 (206)
255 cd03260 ABC_PstB_phosphate_tra 95.5 0.013 2.7E-07 50.1 3.2 29 182-210 22-50 (227)
256 PF00931 NB-ARC: NB-ARC domain 95.5 0.023 5.1E-07 49.2 4.9 22 188-209 21-42 (287)
257 TIGR01978 sufC FeS assembly AT 95.5 0.012 2.5E-07 50.5 3.0 29 182-210 22-50 (243)
258 TIGR01166 cbiO cobalt transpor 95.5 0.012 2.6E-07 49.0 3.0 29 182-210 14-42 (190)
259 cd03256 ABC_PhnC_transporter A 95.5 0.012 2.6E-07 50.4 3.0 29 182-210 23-51 (241)
260 cd03219 ABC_Mj1267_LivG_branch 95.5 0.011 2.4E-07 50.6 2.8 29 182-210 22-50 (236)
261 cd01983 Fer4_NifH The Fer4_Nif 95.5 0.013 2.9E-07 41.2 2.8 30 189-218 2-34 (99)
262 cd03230 ABC_DR_subfamily_A Thi 95.5 0.011 2.4E-07 48.9 2.7 29 182-210 22-50 (173)
263 cd03262 ABC_HisP_GlnQ_permease 95.5 0.012 2.7E-07 49.4 3.0 29 182-210 22-50 (213)
264 PRK06921 hypothetical protein; 95.4 0.018 3.8E-07 52.3 4.2 40 185-224 116-161 (266)
265 cd03265 ABC_DrrA DrrA is the A 95.4 0.013 2.7E-07 50.0 3.1 29 182-210 22-50 (220)
266 cd03263 ABC_subfamily_A The AB 95.4 0.013 2.7E-07 49.7 3.0 29 182-210 24-52 (220)
267 PRK10787 DNA-binding ATP-depen 95.4 0.012 2.6E-07 61.2 3.5 33 183-215 346-378 (784)
268 PRK07429 phosphoribulokinase; 95.4 0.0079 1.7E-07 56.6 1.9 35 187-221 9-46 (327)
269 cd02026 PRK Phosphoribulokinas 95.4 0.0077 1.7E-07 54.9 1.8 32 189-220 2-36 (273)
270 TIGR02315 ABC_phnC phosphonate 95.4 0.013 2.8E-07 50.4 3.0 29 182-210 24-52 (243)
271 cd01394 radB RadB. The archaea 95.4 0.023 4.9E-07 48.2 4.5 42 178-219 6-57 (218)
272 cd03301 ABC_MalK_N The N-termi 95.4 0.013 2.9E-07 49.3 3.1 29 182-210 22-50 (213)
273 PRK10584 putative ABC transpor 95.4 0.013 2.9E-07 50.0 3.1 29 182-210 32-60 (228)
274 cd03224 ABC_TM1139_LivF_branch 95.4 0.013 2.7E-07 49.6 2.9 29 182-210 22-50 (222)
275 PRK11124 artP arginine transpo 95.4 0.013 2.9E-07 50.5 3.0 29 182-210 24-52 (242)
276 cd03218 ABC_YhbG The ABC trans 95.4 0.013 2.9E-07 50.0 3.0 29 182-210 22-50 (232)
277 cd03235 ABC_Metallic_Cations A 95.4 0.012 2.7E-07 49.7 2.7 29 182-210 21-49 (213)
278 PRK15455 PrkA family serine pr 95.4 0.012 2.6E-07 60.7 3.1 27 185-211 102-128 (644)
279 PRK04296 thymidine kinase; Pro 95.3 0.014 3E-07 49.8 3.1 25 186-210 2-26 (190)
280 TIGR03864 PQQ_ABC_ATP ABC tran 95.3 0.014 3E-07 50.3 3.1 29 182-210 23-51 (236)
281 TIGR03410 urea_trans_UrtE urea 95.3 0.013 2.9E-07 50.0 2.9 29 182-210 22-50 (230)
282 PRK09270 nucleoside triphospha 95.3 0.021 4.6E-07 49.6 4.2 40 173-212 16-59 (229)
283 cd03229 ABC_Class3 This class 95.3 0.015 3.2E-07 48.4 3.1 29 182-210 22-50 (178)
284 PRK14961 DNA polymerase III su 95.3 0.015 3.4E-07 54.3 3.5 53 158-212 8-64 (363)
285 PF07726 AAA_3: ATPase family 95.3 0.01 2.2E-07 50.3 2.1 40 188-227 1-44 (131)
286 PRK00411 cdc6 cell division co 95.3 0.016 3.4E-07 53.2 3.5 41 170-210 36-79 (394)
287 cd03266 ABC_NatA_sodium_export 95.3 0.014 3.1E-07 49.3 3.0 29 182-210 27-55 (218)
288 cd01858 NGP_1 NGP-1. Autoanti 95.3 0.036 7.9E-07 44.9 5.2 36 173-208 83-124 (157)
289 cd03226 ABC_cobalt_CbiO_domain 95.3 0.015 3.2E-07 49.1 3.0 29 182-210 22-50 (205)
290 TIGR02397 dnaX_nterm DNA polym 95.3 0.016 3.5E-07 52.1 3.4 52 158-211 6-61 (355)
291 PRK11629 lolD lipoprotein tran 95.3 0.015 3.3E-07 50.1 3.1 28 183-210 32-59 (233)
292 cd03257 ABC_NikE_OppD_transpor 95.3 0.015 3.2E-07 49.3 3.0 29 182-210 27-55 (228)
293 cd00820 PEPCK_HprK Phosphoenol 95.3 0.013 2.7E-07 47.7 2.4 35 185-221 14-48 (107)
294 PHA02575 1 deoxynucleoside mon 95.3 0.019 4.1E-07 52.5 3.8 33 188-221 2-35 (227)
295 COG2256 MGS1 ATPase related to 95.3 0.013 2.9E-07 57.9 3.0 33 188-220 50-82 (436)
296 cd03264 ABC_drug_resistance_li 95.3 0.014 3E-07 49.3 2.8 28 182-210 22-49 (211)
297 cd02034 CooC The accessory pro 95.3 0.017 3.8E-07 46.4 3.2 31 189-219 2-37 (116)
298 TIGR02211 LolD_lipo_ex lipopro 95.3 0.016 3.4E-07 49.2 3.1 29 182-210 27-55 (221)
299 PRK09493 glnQ glutamine ABC tr 95.2 0.015 3.4E-07 50.1 3.0 29 182-210 23-51 (240)
300 TIGR00064 ftsY signal recognit 95.2 0.014 3.1E-07 53.2 2.9 33 186-218 72-109 (272)
301 PRK06620 hypothetical protein; 95.2 0.017 3.8E-07 50.6 3.4 35 187-221 45-79 (214)
302 PRK14250 phosphate ABC transpo 95.2 0.016 3.4E-07 50.4 3.0 29 182-210 25-53 (241)
303 KOG3220 Similar to bacterial d 95.2 0.026 5.6E-07 51.8 4.5 37 189-226 4-40 (225)
304 cd03296 ABC_CysA_sulfate_impor 95.2 0.016 3.4E-07 50.1 3.0 29 182-210 24-52 (239)
305 TIGR03005 ectoine_ehuA ectoine 95.2 0.016 3.4E-07 50.5 3.0 29 182-210 22-50 (252)
306 PRK11264 putative amino-acid A 95.2 0.016 3.5E-07 50.1 3.1 29 182-210 25-53 (250)
307 PRK10895 lipopolysaccharide AB 95.2 0.016 3.6E-07 50.0 3.0 29 182-210 25-53 (241)
308 cd06471 ACD_LpsHSP_like Group 95.2 0.15 3.3E-06 38.6 8.0 72 81-159 3-93 (93)
309 PRK14242 phosphate transporter 95.2 0.017 3.6E-07 50.2 3.1 30 182-211 28-57 (253)
310 PRK08084 DNA replication initi 95.2 0.02 4.3E-07 50.4 3.6 27 185-211 44-70 (235)
311 PRK13541 cytochrome c biogenes 95.2 0.017 3.8E-07 48.5 3.0 28 183-210 23-50 (195)
312 PF07724 AAA_2: AAA domain (Cd 95.2 0.018 3.9E-07 49.1 3.1 25 188-212 5-29 (171)
313 cd02025 PanK Pantothenate kina 95.1 0.015 3.3E-07 51.1 2.7 23 189-211 2-24 (220)
314 TIGR01189 ccmA heme ABC export 95.1 0.018 3.9E-07 48.4 3.0 29 182-210 22-50 (198)
315 PRK15453 phosphoribulokinase; 95.1 0.017 3.7E-07 54.5 3.2 37 185-221 4-45 (290)
316 PRK10744 pstB phosphate transp 95.1 0.017 3.7E-07 50.7 3.0 29 182-210 35-63 (260)
317 cd03268 ABC_BcrA_bacitracin_re 95.1 0.018 3.9E-07 48.5 3.0 29 182-210 22-50 (208)
318 COG1123 ATPase components of v 95.1 0.014 3E-07 59.1 2.7 29 182-210 313-341 (539)
319 PRK11300 livG leucine/isoleuci 95.1 0.017 3.6E-07 50.2 2.9 29 182-210 27-55 (255)
320 PRK06645 DNA polymerase III su 95.1 0.024 5.1E-07 56.6 4.3 54 158-213 13-70 (507)
321 PF06068 TIP49: TIP49 C-termin 95.1 0.02 4.4E-07 56.2 3.7 35 182-216 46-82 (398)
322 PRK10619 histidine/lysine/argi 95.1 0.019 4E-07 50.3 3.0 29 182-210 27-55 (257)
323 PRK15177 Vi polysaccharide exp 95.1 0.019 4.1E-07 49.5 3.0 29 182-210 9-37 (213)
324 cd03214 ABC_Iron-Siderophores_ 95.1 0.02 4.3E-07 47.7 3.0 29 182-210 21-49 (180)
325 cd03248 ABCC_TAP TAP, the Tran 95.1 0.019 4.1E-07 49.0 2.9 29 182-210 36-64 (226)
326 PRK14247 phosphate ABC transpo 95.0 0.019 4.1E-07 49.8 3.0 29 182-210 25-53 (250)
327 PRK14260 phosphate ABC transpo 95.0 0.02 4.4E-07 50.2 3.2 29 182-210 29-57 (259)
328 COG0572 Udk Uridine kinase [Nu 95.0 0.019 4E-07 52.2 3.0 42 187-228 9-53 (218)
329 TIGR02928 orc1/cdc6 family rep 95.0 0.028 6.1E-07 50.9 4.2 41 170-210 21-64 (365)
330 PRK14274 phosphate ABC transpo 95.0 0.021 4.6E-07 50.0 3.3 29 182-210 34-62 (259)
331 PRK14245 phosphate ABC transpo 95.0 0.022 4.8E-07 49.6 3.4 30 182-211 25-54 (250)
332 cd01918 HprK_C HprK/P, the bif 95.0 0.019 4.1E-07 49.1 2.8 34 184-218 12-45 (149)
333 PRK08116 hypothetical protein; 95.0 0.029 6.2E-07 50.9 4.2 39 186-224 114-157 (268)
334 PRK13540 cytochrome c biogenes 95.0 0.021 4.5E-07 48.2 3.1 28 183-210 24-51 (200)
335 PRK11248 tauB taurine transpor 95.0 0.02 4.3E-07 50.7 3.0 29 182-210 23-51 (255)
336 PRK14251 phosphate ABC transpo 95.0 0.02 4.4E-07 49.7 3.1 29 182-210 26-54 (251)
337 PRK11034 clpA ATP-dependent Cl 95.0 0.027 5.8E-07 58.7 4.4 35 188-222 490-526 (758)
338 PRK10771 thiQ thiamine transpo 95.0 0.02 4.3E-07 49.3 2.9 29 182-210 21-49 (232)
339 PRK05703 flhF flagellar biosyn 95.0 0.031 6.8E-07 54.2 4.6 48 172-219 198-261 (424)
340 TIGR00764 lon_rel lon-related 95.0 0.042 9.2E-07 55.6 5.7 29 185-213 36-64 (608)
341 cd03216 ABC_Carb_Monos_I This 95.0 0.022 4.8E-07 47.0 3.0 29 182-210 22-50 (163)
342 cd03251 ABCC_MsbA MsbA is an e 95.0 0.02 4.4E-07 48.9 2.9 29 182-210 24-52 (234)
343 cd03254 ABCC_Glucan_exporter_l 95.0 0.02 4.3E-07 48.9 2.8 29 182-210 25-53 (229)
344 TIGR00972 3a0107s01c2 phosphat 94.9 0.021 4.6E-07 49.5 3.0 29 182-210 23-51 (247)
345 PTZ00301 uridine kinase; Provi 94.9 0.019 4.1E-07 50.7 2.7 22 189-210 6-27 (210)
346 TIGR03771 anch_rpt_ABC anchore 94.9 0.021 4.6E-07 49.2 3.0 27 184-210 4-30 (223)
347 PRK14241 phosphate transporter 94.9 0.021 4.6E-07 50.0 3.0 29 182-210 26-54 (258)
348 PRK14262 phosphate ABC transpo 94.9 0.021 4.7E-07 49.5 3.0 29 182-210 25-53 (250)
349 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.9 0.023 5.1E-07 48.8 3.2 29 182-210 25-53 (238)
350 cd03295 ABC_OpuCA_Osmoprotecti 94.9 0.022 4.8E-07 49.3 3.1 29 182-210 23-51 (242)
351 PRK15093 antimicrobial peptide 94.9 0.02 4.3E-07 52.9 2.9 29 182-210 29-57 (330)
352 PRK11701 phnK phosphonate C-P 94.9 0.022 4.8E-07 49.9 3.0 29 182-210 28-56 (258)
353 COG1219 ClpX ATP-dependent pro 94.9 0.019 4E-07 56.2 2.8 33 187-219 98-130 (408)
354 cd03233 ABC_PDR_domain1 The pl 94.9 0.02 4.3E-07 48.8 2.6 30 182-211 29-58 (202)
355 cd03298 ABC_ThiQ_thiamine_tran 94.9 0.023 4.9E-07 48.0 3.0 29 182-210 20-48 (211)
356 PRK14239 phosphate transporter 94.9 0.022 4.8E-07 49.3 3.0 28 182-209 27-54 (252)
357 TIGR02323 CP_lyasePhnK phospho 94.9 0.022 4.8E-07 49.5 3.0 29 182-210 25-53 (253)
358 cd03223 ABCD_peroxisomal_ALDP 94.9 0.019 4.2E-07 47.5 2.5 29 182-210 23-51 (166)
359 PF08477 Miro: Miro-like prote 94.9 0.025 5.5E-07 42.6 2.9 23 188-210 1-23 (119)
360 PRK10908 cell division protein 94.9 0.023 5E-07 48.4 3.0 29 182-210 24-52 (222)
361 cd03247 ABCC_cytochrome_bd The 94.9 0.024 5.2E-07 47.0 3.0 29 182-210 24-52 (178)
362 PRK14248 phosphate ABC transpo 94.9 0.023 5E-07 50.2 3.1 29 182-210 43-71 (268)
363 TIGR00073 hypB hydrogenase acc 94.9 0.023 4.9E-07 48.6 2.9 25 187-211 23-47 (207)
364 CHL00131 ycf16 sulfate ABC tra 94.9 0.021 4.5E-07 49.5 2.7 28 182-209 29-56 (252)
365 PRK13638 cbiO cobalt transport 94.8 0.022 4.7E-07 50.5 2.8 29 182-210 23-51 (271)
366 TIGR02868 CydC thiol reductant 94.8 0.021 4.6E-07 54.9 3.0 29 182-210 357-385 (529)
367 PRK14273 phosphate ABC transpo 94.8 0.023 4.9E-07 49.6 2.9 29 182-210 29-57 (254)
368 cd03252 ABCC_Hemolysin The ABC 94.8 0.024 5.2E-07 48.7 3.0 29 182-210 24-52 (237)
369 PRK10247 putative ABC transpor 94.8 0.024 5.3E-07 48.8 3.1 29 182-210 29-57 (225)
370 cd01131 PilT Pilus retraction 94.8 0.024 5.2E-07 48.6 3.0 23 189-211 4-26 (198)
371 PRK13341 recombination factor 94.8 0.029 6.4E-07 58.1 4.2 34 187-220 53-86 (725)
372 TIGR02770 nickel_nikD nickel i 94.8 0.023 5.1E-07 48.9 2.9 28 183-210 9-36 (230)
373 cd03234 ABCG_White The White s 94.8 0.022 4.8E-07 48.8 2.8 36 176-211 22-58 (226)
374 PRK14261 phosphate ABC transpo 94.8 0.024 5.2E-07 49.4 3.0 29 183-211 29-57 (253)
375 PRK14267 phosphate ABC transpo 94.8 0.024 5.2E-07 49.3 3.0 29 182-210 26-54 (253)
376 cd03228 ABCC_MRP_Like The MRP 94.8 0.025 5.3E-07 46.8 2.9 29 182-210 24-52 (171)
377 PRK11831 putative ABC transpor 94.8 0.023 5E-07 50.4 3.0 29 182-210 29-57 (269)
378 PRK13538 cytochrome c biogenes 94.8 0.022 4.8E-07 48.2 2.7 29 182-210 23-51 (204)
379 PF00448 SRP54: SRP54-type pro 94.8 0.025 5.4E-07 49.2 3.1 24 188-211 3-26 (196)
380 TIGR02324 CP_lyasePhnL phospho 94.8 0.025 5.4E-07 48.2 3.0 29 182-210 30-58 (224)
381 cd03215 ABC_Carb_Monos_II This 94.8 0.025 5.4E-07 47.2 2.9 29 182-210 22-50 (182)
382 PRK12727 flagellar biosynthesi 94.8 0.029 6.4E-07 57.1 4.0 50 170-219 325-390 (559)
383 PRK14255 phosphate ABC transpo 94.8 0.025 5.4E-07 49.2 3.0 30 182-211 27-56 (252)
384 cd03244 ABCC_MRP_domain2 Domai 94.8 0.026 5.7E-07 47.8 3.1 29 182-210 26-54 (221)
385 COG4088 Predicted nucleotide k 94.8 0.02 4.4E-07 53.2 2.6 24 189-212 4-27 (261)
386 COG1618 Predicted nucleotide k 94.8 0.024 5.2E-07 50.5 2.9 24 187-210 6-29 (179)
387 PRK13543 cytochrome c biogenes 94.8 0.026 5.7E-07 48.2 3.1 29 182-210 33-61 (214)
388 TIGR01277 thiQ thiamine ABC tr 94.7 0.026 5.6E-07 48.0 3.0 29 182-210 20-48 (213)
389 cd03246 ABCC_Protease_Secretio 94.7 0.028 6E-07 46.5 3.1 29 182-210 24-52 (173)
390 PRK14237 phosphate transporter 94.7 0.026 5.6E-07 50.0 3.1 27 184-210 44-70 (267)
391 cd03245 ABCC_bacteriocin_expor 94.7 0.027 5.8E-07 47.8 3.1 35 176-210 19-54 (220)
392 PRK14256 phosphate ABC transpo 94.7 0.026 5.7E-07 49.1 3.1 29 182-210 26-54 (252)
393 PRK12723 flagellar biosynthesi 94.7 0.04 8.7E-07 53.3 4.6 39 172-210 150-198 (388)
394 PRK10416 signal recognition pa 94.7 0.042 9E-07 51.4 4.6 47 173-219 89-152 (318)
395 PRK13645 cbiO cobalt transport 94.7 0.023 5E-07 50.9 2.8 29 182-210 33-61 (289)
396 PRK14269 phosphate ABC transpo 94.7 0.027 5.8E-07 49.0 3.1 29 182-210 24-52 (246)
397 cd04164 trmE TrmE (MnmE, ThdF, 94.7 0.027 5.9E-07 43.1 2.8 23 186-208 1-23 (157)
398 PRK11022 dppD dipeptide transp 94.7 0.023 5.1E-07 52.5 2.9 30 182-211 29-58 (326)
399 TIGR03411 urea_trans_UrtD urea 94.7 0.026 5.7E-07 48.6 3.0 29 182-210 24-52 (242)
400 cd03222 ABC_RNaseL_inhibitor T 94.7 0.026 5.7E-07 48.4 3.0 29 182-210 21-49 (177)
401 PRK14270 phosphate ABC transpo 94.7 0.027 5.9E-07 49.0 3.1 29 182-210 26-54 (251)
402 PRK15056 manganese/iron transp 94.7 0.026 5.6E-07 50.2 3.0 29 182-210 29-57 (272)
403 COG2019 AdkA Archaeal adenylat 94.7 0.035 7.6E-07 49.8 3.8 42 184-225 1-44 (189)
404 PRK13652 cbiO cobalt transport 94.7 0.026 5.7E-07 50.4 3.0 29 182-210 26-54 (277)
405 PRK13539 cytochrome c biogenes 94.7 0.028 6.1E-07 47.8 3.1 29 182-210 24-52 (207)
406 PRK11308 dppF dipeptide transp 94.7 0.024 5.2E-07 52.6 2.8 29 182-210 37-65 (327)
407 PRK14272 phosphate ABC transpo 94.7 0.026 5.6E-07 48.9 2.9 29 182-210 26-54 (252)
408 PRK10575 iron-hydroxamate tran 94.7 0.024 5.3E-07 50.0 2.8 28 183-210 34-61 (265)
409 cd03217 ABC_FeS_Assembly ABC-t 94.7 0.024 5.2E-07 48.1 2.6 29 182-210 22-50 (200)
410 PRK10418 nikD nickel transport 94.7 0.027 5.8E-07 49.4 3.0 29 182-210 25-53 (254)
411 PRK14244 phosphate ABC transpo 94.7 0.028 6E-07 48.9 3.1 30 182-211 27-56 (251)
412 cd06470 ACD_IbpA-B_like Alpha- 94.7 0.34 7.4E-06 37.1 8.7 65 87-159 10-90 (90)
413 PF03668 ATP_bind_2: P-loop AT 94.7 0.022 4.8E-07 53.5 2.6 36 189-225 4-45 (284)
414 cd03232 ABC_PDR_domain2 The pl 94.7 0.028 6.1E-07 47.4 3.0 28 182-209 29-56 (192)
415 TIGR01184 ntrCD nitrate transp 94.7 0.028 6.1E-07 48.7 3.0 28 183-210 8-35 (230)
416 PHA02544 44 clamp loader, smal 94.7 0.042 9.2E-07 49.0 4.3 28 188-215 44-72 (316)
417 PRK14243 phosphate transporter 94.6 0.03 6.5E-07 49.5 3.2 30 182-211 32-61 (264)
418 PRK09544 znuC high-affinity zi 94.6 0.028 6.1E-07 49.8 3.0 29 182-210 26-54 (251)
419 PRK14253 phosphate ABC transpo 94.6 0.031 6.7E-07 48.5 3.2 29 182-210 25-53 (249)
420 PRK09473 oppD oligopeptide tra 94.6 0.025 5.3E-07 52.6 2.8 29 182-210 38-66 (330)
421 cd03290 ABCC_SUR1_N The SUR do 94.6 0.029 6.4E-07 47.7 3.0 35 176-210 16-51 (218)
422 PRK09984 phosphonate/organopho 94.6 0.025 5.4E-07 49.7 2.7 29 182-210 26-54 (262)
423 PRK09361 radB DNA repair and r 94.6 0.072 1.6E-06 45.5 5.4 53 178-230 10-76 (225)
424 TIGR01193 bacteriocin_ABC ABC- 94.6 0.025 5.5E-07 56.6 3.0 29 182-210 496-524 (708)
425 PRK13649 cbiO cobalt transport 94.6 0.028 6E-07 50.0 2.9 29 182-210 29-57 (280)
426 PRK14259 phosphate ABC transpo 94.6 0.028 6.2E-07 49.9 3.0 29 182-210 35-63 (269)
427 PRK09580 sufC cysteine desulfu 94.6 0.027 5.9E-07 48.5 2.7 29 182-210 23-51 (248)
428 cd00267 ABC_ATPase ABC (ATP-bi 94.5 0.029 6.3E-07 45.4 2.7 29 182-210 21-49 (157)
429 PRK11247 ssuB aliphatic sulfon 94.5 0.027 6E-07 50.3 2.8 29 182-210 34-62 (257)
430 PRK11614 livF leucine/isoleuci 94.5 0.028 6.1E-07 48.4 2.7 29 182-210 27-55 (237)
431 PRK14268 phosphate ABC transpo 94.5 0.031 6.6E-07 49.1 3.0 29 182-210 34-62 (258)
432 cd03253 ABCC_ATM1_transporter 94.5 0.032 6.9E-07 47.8 3.1 29 182-210 23-51 (236)
433 cd03231 ABC_CcmA_heme_exporter 94.5 0.032 6.9E-07 47.2 3.0 29 182-210 22-50 (201)
434 PRK13639 cbiO cobalt transport 94.5 0.03 6.4E-07 50.0 3.0 29 182-210 24-52 (275)
435 cd03237 ABC_RNaseL_inhibitor_d 94.5 0.03 6.6E-07 49.7 3.0 27 184-210 23-49 (246)
436 cd03273 ABC_SMC2_euk Eukaryoti 94.5 0.035 7.7E-07 48.7 3.4 25 188-212 27-51 (251)
437 PRK14240 phosphate transporter 94.5 0.031 6.8E-07 48.5 3.0 29 182-210 25-53 (250)
438 PRK14238 phosphate transporter 94.5 0.033 7.1E-07 49.6 3.2 29 182-210 46-74 (271)
439 cd03250 ABCC_MRP_domain1 Domai 94.5 0.033 7.1E-07 46.9 3.0 29 182-210 27-55 (204)
440 COG0396 sufC Cysteine desulfur 94.5 0.025 5.4E-07 52.7 2.5 38 181-218 17-62 (251)
441 cd03369 ABCC_NFT1 Domain 2 of 94.5 0.034 7.4E-07 46.9 3.1 29 182-210 30-58 (207)
442 cd03267 ABC_NatA_like Similar 94.5 0.033 7.1E-07 48.4 3.0 29 182-210 43-71 (236)
443 PRK13632 cbiO cobalt transport 94.5 0.032 6.9E-07 49.6 3.0 29 182-210 31-59 (271)
444 PRK14235 phosphate transporter 94.5 0.035 7.7E-07 49.2 3.3 28 183-210 42-69 (267)
445 PRK14266 phosphate ABC transpo 94.4 0.037 8E-07 48.0 3.3 30 182-211 25-54 (250)
446 TIGR03740 galliderm_ABC gallid 94.4 0.035 7.7E-07 47.4 3.0 29 182-210 22-50 (223)
447 PRK11231 fecE iron-dicitrate t 94.4 0.034 7.3E-07 48.7 3.0 29 182-210 24-52 (255)
448 PRK13640 cbiO cobalt transport 94.4 0.029 6.2E-07 50.4 2.6 29 182-210 29-57 (282)
449 TIGR00968 3a0106s01 sulfate AB 94.4 0.031 6.8E-07 48.5 2.7 29 182-210 22-50 (237)
450 TIGR02769 nickel_nikE nickel i 94.4 0.034 7.4E-07 49.1 3.0 29 182-210 33-61 (265)
451 cd03294 ABC_Pro_Gly_Bertaine T 94.4 0.034 7.5E-07 49.4 3.0 28 183-210 47-74 (269)
452 PRK06893 DNA replication initi 94.4 0.04 8.7E-07 48.2 3.4 33 186-218 39-76 (229)
453 PF00437 T2SE: Type II/IV secr 94.4 0.051 1.1E-06 47.8 4.0 27 186-212 127-153 (270)
454 PRK13647 cbiO cobalt transport 94.4 0.034 7.4E-07 49.7 3.0 29 182-210 27-55 (274)
455 PRK13531 regulatory ATPase Rav 94.4 0.05 1.1E-06 54.7 4.4 34 178-211 31-64 (498)
456 PRK11174 cysteine/glutathione 94.4 0.029 6.2E-07 54.7 2.7 28 183-210 373-400 (588)
457 PRK14722 flhF flagellar biosyn 94.4 0.035 7.5E-07 53.6 3.2 36 185-220 136-178 (374)
458 TIGR03873 F420-0_ABC_ATP propo 94.4 0.033 7.2E-07 48.7 2.8 29 182-210 23-51 (256)
459 PRK14265 phosphate ABC transpo 94.4 0.035 7.6E-07 49.6 3.0 29 182-210 42-70 (274)
460 cd04155 Arl3 Arl3 subfamily. 94.4 0.047 1E-06 43.4 3.5 30 180-209 8-37 (173)
461 PRK11176 lipid transporter ATP 94.3 0.033 7.2E-07 54.1 3.1 28 183-210 366-393 (582)
462 PRK12724 flagellar biosynthesi 94.3 0.04 8.6E-07 54.5 3.6 35 185-219 222-262 (432)
463 cd03279 ABC_sbcCD SbcCD and ot 94.3 0.026 5.6E-07 48.4 2.1 25 186-210 28-52 (213)
464 PRK13651 cobalt transporter AT 94.3 0.035 7.6E-07 51.0 3.0 29 182-210 29-57 (305)
465 TIGR03797 NHPM_micro_ABC2 NHPM 94.3 0.033 7.1E-07 55.7 3.0 29 182-210 475-503 (686)
466 PRK15079 oligopeptide ABC tran 94.3 0.032 7E-07 51.9 2.8 29 182-210 43-71 (331)
467 PRK10419 nikE nickel transport 94.3 0.036 7.8E-07 49.3 3.0 29 182-210 34-62 (268)
468 cd03300 ABC_PotA_N PotA is an 94.3 0.038 8.3E-07 47.7 3.1 29 182-210 22-50 (232)
469 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.3 0.037 8.1E-07 47.8 3.0 29 182-210 44-72 (224)
470 PRK13648 cbiO cobalt transport 94.3 0.038 8.2E-07 49.0 3.0 29 182-210 31-59 (269)
471 TIGR00176 mobB molybdopterin-g 94.3 0.036 7.8E-07 46.5 2.8 26 189-214 2-30 (155)
472 PRK13547 hmuV hemin importer A 94.3 0.033 7.1E-07 50.1 2.7 29 182-210 23-51 (272)
473 PRK15112 antimicrobial peptide 94.2 0.039 8.4E-07 48.9 3.1 29 182-210 35-63 (267)
474 TIGR00368 Mg chelatase-related 94.2 0.019 4.2E-07 57.0 1.2 60 173-234 197-257 (499)
475 KOG0692 Pentafunctional AROM p 94.2 0.011 2.4E-07 59.9 -0.5 32 187-218 564-595 (595)
476 TIGR01288 nodI ATP-binding ABC 94.2 0.039 8.4E-07 50.0 3.0 29 182-210 26-54 (303)
477 PRK14252 phosphate ABC transpo 94.2 0.04 8.7E-07 48.6 3.1 28 183-210 39-66 (265)
478 PRK13548 hmuV hemin importer A 94.2 0.039 8.5E-07 48.7 3.0 29 182-210 24-52 (258)
479 cd02029 PRK_like Phosphoribulo 94.2 0.022 4.9E-07 53.4 1.5 33 189-221 2-39 (277)
480 PRK06835 DNA replication prote 94.2 0.043 9.2E-07 51.7 3.4 41 185-225 182-227 (329)
481 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.2 0.041 8.8E-07 44.8 2.8 29 182-210 22-50 (144)
482 PRK13646 cbiO cobalt transport 94.2 0.04 8.7E-07 49.5 3.0 29 182-210 29-57 (286)
483 PRK14249 phosphate ABC transpo 94.2 0.039 8.5E-07 48.0 2.9 29 182-210 26-54 (251)
484 TIGR01188 drrA daunorubicin re 94.1 0.036 7.9E-07 50.2 2.7 29 182-210 15-43 (302)
485 PRK14236 phosphate transporter 94.1 0.043 9.3E-07 48.8 3.1 28 183-210 48-75 (272)
486 PRK11153 metN DL-methionine tr 94.1 0.041 8.9E-07 51.2 3.0 29 182-210 27-55 (343)
487 TIGR02204 MsbA_rel ABC transpo 94.1 0.04 8.7E-07 53.3 3.1 29 182-210 362-390 (576)
488 PRK13974 thymidylate kinase; P 94.1 0.047 1E-06 47.1 3.2 27 185-211 2-28 (212)
489 PRK03695 vitamin B12-transport 94.1 0.038 8.2E-07 48.5 2.7 29 182-210 18-46 (248)
490 PF03193 DUF258: Protein of un 94.1 0.062 1.4E-06 46.4 3.9 34 177-210 26-59 (161)
491 PRK13409 putative ATPase RIL; 94.1 0.074 1.6E-06 53.5 5.0 56 178-233 91-152 (590)
492 PRK14721 flhF flagellar biosyn 94.1 0.066 1.4E-06 52.5 4.5 25 185-209 190-214 (420)
493 PRK14950 DNA polymerase III su 94.1 0.049 1.1E-06 54.5 3.7 53 158-212 8-64 (585)
494 PRK13546 teichoic acids export 94.0 0.043 9.3E-07 49.3 3.0 29 182-210 46-74 (264)
495 COG1132 MdlB ABC-type multidru 94.0 0.042 9.1E-07 53.6 3.1 30 183-212 352-381 (567)
496 PRK13650 cbiO cobalt transport 94.0 0.045 9.7E-07 49.1 3.0 29 182-210 29-57 (279)
497 cd01890 LepA LepA subfamily. 94.0 0.055 1.2E-06 43.3 3.3 25 187-211 1-25 (179)
498 PRK13641 cbiO cobalt transport 94.0 0.045 9.7E-07 49.2 3.0 29 182-210 29-57 (287)
499 PF05783 DLIC: Dynein light in 94.0 0.051 1.1E-06 54.0 3.7 46 173-218 7-65 (472)
500 TIGR00231 small_GTP small GTP- 94.0 0.049 1.1E-06 40.5 2.8 24 187-210 2-25 (161)
No 1
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.94 E-value=7.2e-27 Score=201.50 Aligned_cols=73 Identities=21% Similarity=0.228 Sum_probs=69.9
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcccCC
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEPL 258 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~~l 258 (261)
.+||+||||||+|||||||.||++|||+|+|+|++||+.+|+||++||+++||++||++|.+||.+++..++.
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ 74 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEEDNA 74 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCe
Confidence 4689999999999999999999999999999999999999999999999999999999999999999987643
No 2
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=99.92 E-value=3.7e-25 Score=170.08 Aligned_cols=86 Identities=26% Similarity=0.586 Sum_probs=81.5
Q ss_pred eEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEec-CeEEEEEEe
Q 024881 81 YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDE-DQLVINLKK 159 (261)
Q Consensus 81 Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD-~~lvv~L~K 159 (261)
|.|+||+.||+|+||||...++++||+.|+++.++|+|++++++++ |+ |+||++|++|||+|+||| +.|+|+|+|
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~~~---i~-G~L~~~V~~des~Wtled~~~l~i~L~K 76 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPPI---ID-GELYNEVKVEESSWLIEDGKVVTVNLEK 76 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCCceE---Ee-CcccCcccccccEEEEeCCCEEEEEEEE
Confidence 8999999999999999986568999999999999999999998777 99 999999999999999999 789999999
Q ss_pred cCCCCCCcccccchhHHH
Q 024881 160 QDPELKWPDIVESWESLT 177 (261)
Q Consensus 160 ~d~~m~Wp~~~e~We~l~ 177 (261)
.++ |+| |+||+
T Consensus 77 ~~~-~~w------W~~l~ 87 (87)
T cd06492 77 INK-MEW------WSRLV 87 (87)
T ss_pred CCC-Ccc------ccccC
Confidence 998 999 99985
No 3
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.92 E-value=8.4e-25 Score=174.11 Aligned_cols=92 Identities=20% Similarity=0.492 Sum_probs=82.1
Q ss_pred CCCCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEcc---CCcceeeeecccccCCCCCCceeeEEec-C
Q 024881 76 ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNR---SGSFITLIETNQLFDKIKPTETIWYIDE-D 151 (261)
Q Consensus 76 ~~t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~---~~~~~tlId~g~L~~kIk~~Et~W~IdD-~ 151 (261)
+.+++|.|+||+.||+|++|+|+. .+++||+.|+++.++|+|++++ +.++ |+ |+||++|++|||+|+||| +
T Consensus 2 ~~~e~Y~WtQTl~eV~V~i~lp~~-~~~~kdv~v~i~~~~l~v~~~~~~~~~~~---i~-G~L~~~V~~des~Wtled~~ 76 (102)
T cd06495 2 AVRENYTWSQDYTDVEVRVPVPKD-VVKGRQVSVDLQSSSIRVSVRDGGGEKVL---ME-GEFTHKINTENSLWSLEPGK 76 (102)
T ss_pred CcCCceEEEeECCeEEEEEECCCC-CccceEEEEEEEcCEEEEEEecCCCCceE---Ee-CcccCcccCccceEEEeCCC
Confidence 457899999999999999999993 3689999999999999999985 2244 99 999999999999999999 7
Q ss_pred eEEEEEEecCCCCCCcccccchhHHHHHH
Q 024881 152 QLVINLKKQDPELKWPDIVESWESLTAGS 180 (261)
Q Consensus 152 ~lvv~L~K~d~~m~Wp~~~e~We~l~~g~ 180 (261)
.|+|+|+|.+ +.| |+||++|=
T Consensus 77 ~l~I~L~K~~--~~w------W~~v~~g~ 97 (102)
T cd06495 77 CVLLSLSKCS--EVW------WNAVLKGE 97 (102)
T ss_pred EEEEEEEECC--Ccc------cchhhCCC
Confidence 7999999995 679 99997763
No 4
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.90 E-value=7.7e-24 Score=165.61 Aligned_cols=89 Identities=19% Similarity=0.373 Sum_probs=81.8
Q ss_pred CCCCCCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCe-
Q 024881 74 IPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQ- 152 (261)
Q Consensus 74 ~~~~t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~- 152 (261)
+|..|++|.|+||+.||+|++|+|. ++++|||.|+++.++|+|+++++. + |+ |+||++|++|||+|+|+|+.
T Consensus 1 ~~~~~~~y~W~QT~~eV~v~i~lp~--~~~~kdv~V~i~~~~l~V~~~g~~-~---l~-G~L~~~I~~destWtled~k~ 73 (93)
T cd06494 1 VPCKTPWGCWYQTMDEVFIEVNVPP--GTRAKDVKCKLGSRDISLAVKGQE-V---LK-GKLFDSVVADECTWTLEDRKL 73 (93)
T ss_pred CCccCCCcEEEeEcCEEEEEEECCC--CCceeeEEEEEEcCEEEEEECCEE-E---Ec-CcccCccCcccCEEEEECCcE
Confidence 4778999999999999999999999 799999999999999999998874 5 99 99999999999999999966
Q ss_pred EEEEEEecCCCC--CCcccccchhHH
Q 024881 153 LVINLKKQDPEL--KWPDIVESWESL 176 (261)
Q Consensus 153 lvv~L~K~d~~m--~Wp~~~e~We~l 176 (261)
|+|+|+|.++ + +| |++|
T Consensus 74 l~I~L~K~~~-~~~~~------W~sl 92 (93)
T cd06494 74 IRIVLTKSNR-DAGNC------WKSL 92 (93)
T ss_pred EEEEEEeCCC-CCCcc------cccc
Confidence 7999999998 7 47 7765
No 5
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=99.89 E-value=1.1e-23 Score=183.24 Aligned_cols=97 Identities=24% Similarity=0.509 Sum_probs=89.7
Q ss_pred cCCCCCCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEec-C
Q 024881 73 SIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDE-D 151 (261)
Q Consensus 73 ~~~~~t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD-~ 151 (261)
-..+..++|+|+|||.||+|+||||+.+ .+||+|.|.|.++|++|++|+++++ ++ |+||++||++||.|+||| +
T Consensus 13 ~ng~~~~~y~W~QtL~EV~i~i~vp~~~-~ksk~v~~~Iq~~hI~V~~kg~~~i---ld-G~L~~~vk~des~WtiEd~k 87 (179)
T KOG2265|consen 13 GNGADEEKYTWDQTLEEVEIQIPVPPGT-AKSKDVHCSIQSKHIKVGLKGQPPI---LD-GELSHSVKVDESTWTIEDGK 87 (179)
T ss_pred cCCccccceeeeeehhheEEEeecCCCC-cccceEEEEeeeeEEEEecCCCCce---ec-CccccccccccceEEecCCE
Confidence 3456778999999999999999999964 6999999999999999999999977 99 999999999999999999 8
Q ss_pred eEEEEEEecCCCCCCcccccchhHHHHHHH
Q 024881 152 QLVINLKKQDPELKWPDIVESWESLTAGSM 181 (261)
Q Consensus 152 ~lvv~L~K~d~~m~Wp~~~e~We~l~~g~~ 181 (261)
.+++.|+|.+. |+| |.|++.|=.
T Consensus 88 ~i~i~l~K~~~-~eW------W~~ll~gep 110 (179)
T KOG2265|consen 88 MIVILLKKSNK-MEW------WDSLLEGEP 110 (179)
T ss_pred EEEEEeeccch-HHH------HHHHHcCCC
Confidence 88999999998 999 999998754
No 6
>PRK13948 shikimate kinase; Provisional
Probab=99.86 E-value=3.9e-22 Score=170.53 Aligned_cols=74 Identities=18% Similarity=0.155 Sum_probs=70.2
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcccC
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEP 257 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~~ 257 (261)
..+.+|+|+||||+||||||+.||++||+.|+|+|.+||+.+|++|++||++.||++||++|.++|++++...+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~ 81 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGKSIPEIFRHLGEAYFRRCEAEVVRRLTRLDY 81 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHhCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999986544
No 7
>PLN02199 shikimate kinase
Probab=99.86 E-value=1.1e-21 Score=181.94 Aligned_cols=82 Identities=22% Similarity=0.276 Sum_probs=76.9
Q ss_pred HHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH-hCCCHHHHHHhhCchhHHhhHHHHHHHHhcc
Q 024881 177 TAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF-AKQTIDSWMLAEGSDSVVNGECDVLESLIMF 255 (261)
Q Consensus 177 ~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~-agkSI~eIFaeeGE~~FRelEs~VLeels~~ 255 (261)
.+-+...|+|.+|+||||||+||||||+.||+.|||+|+|+|.+||+. .|++|++||+..||+.||++|+++|++++..
T Consensus 93 a~~i~~~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~ 172 (303)
T PLN02199 93 AEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSR 172 (303)
T ss_pred HHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCCHHHHHHHhCHHHHHHHHHHHHHHHHhc
Confidence 467788999999999999999999999999999999999999999997 7999999999999999999999999999865
Q ss_pred cCC
Q 024881 256 EPL 258 (261)
Q Consensus 256 ~~l 258 (261)
.+.
T Consensus 173 ~~~ 175 (303)
T PLN02199 173 YQV 175 (303)
T ss_pred CCE
Confidence 553
No 8
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.83 E-value=5.6e-21 Score=185.82 Aligned_cols=71 Identities=15% Similarity=0.113 Sum_probs=67.6
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcccC
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEP 257 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~~ 257 (261)
..||||||||+|||||||.||++|||+|+|+|++||+.+|+||+|||+++||++||++|+++|++++...+
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~~ 77 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIGMSIPSYFEEYGEPAFREVEADVVADMLEDFD 77 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999885444
No 9
>PRK00625 shikimate kinase; Provisional
Probab=99.82 E-value=2.1e-20 Score=158.33 Aligned_cols=68 Identities=24% Similarity=0.181 Sum_probs=65.7
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCC----CHHHHHHhhCchhHHhhHHHHHHHHhc
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ----TIDSWMLAEGSDSVVNGECDVLESLIM 254 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agk----SI~eIFaeeGE~~FRelEs~VLeels~ 254 (261)
+||+||||||+||||+|+.||++|||+|+|+|++||+.+|. ++++||++.||++||++|.++|+++..
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~ 72 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLPV 72 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence 48999999999999999999999999999999999999998 999999999999999999999999865
No 10
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=99.81 E-value=8.5e-20 Score=137.68 Aligned_cols=84 Identities=20% Similarity=0.426 Sum_probs=76.6
Q ss_pred eEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEec-CeEEEEEEe
Q 024881 81 YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDE-DQLVINLKK 159 (261)
Q Consensus 81 Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD-~~lvv~L~K 159 (261)
|.|+|+..+|+|.|++|. +++++|+.|+++.++|.|.+++.+.+ ++ |+||++|++++|+|+++| +.|.|+|+|
T Consensus 1 Y~W~Qt~~~V~v~i~~p~--~~~~~dv~v~~~~~~l~v~~~~~~~~---~~-g~L~~~I~~d~Stw~i~~~~~l~i~L~K 74 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPE--DTTKEDIRIKFLPDHISIALKDQAPL---LE-GKLYSSIDHESSTWIIKENKSLEVSLIK 74 (85)
T ss_pred CccEEeCCEEEEEEECCC--CCChhhEEEEEecCEEEEEeCCCCeE---Ee-CcccCcccccCcEEEEeCCCEEEEEEEE
Confidence 899999999999999997 78999999999999999999865555 88 999999999999999987 579999999
Q ss_pred cCCCCCCcccccchhHHH
Q 024881 160 QDPELKWPDIVESWESLT 177 (261)
Q Consensus 160 ~d~~m~Wp~~~e~We~l~ 177 (261)
.+. ++| |+||+
T Consensus 75 ~~~-~~~------W~~L~ 85 (85)
T cd06493 75 KDE-GPT------WPELV 85 (85)
T ss_pred CCC-Ccc------ccccC
Confidence 998 788 88874
No 11
>PRK13949 shikimate kinase; Provisional
Probab=99.77 E-value=6.2e-19 Score=147.37 Aligned_cols=71 Identities=23% Similarity=0.273 Sum_probs=67.4
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcccC
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEP 257 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~~ 257 (261)
.+|+|||+||+||||+|+.||+.|||+|+|+|.+||+..|++|.+||.+.||+.||++|.++|+++....+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~ 72 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKTVGDIFAERGEAVFRELERNMLHEVAEFED 72 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCccHHHHHHHhCHHHHHHHHHHHHHHHHhCCC
Confidence 37999999999999999999999999999999999999999999999999999999999999999875544
No 12
>PRK13947 shikimate kinase; Provisional
Probab=99.77 E-value=6.2e-19 Score=142.44 Aligned_cols=70 Identities=17% Similarity=0.204 Sum_probs=66.9
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcccC
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEP 257 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~~ 257 (261)
||+|+|+|||||||+|+.||++|||+|+|+|.++++.+|.++.++|.+.||+.||+.|.++++++....+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~ 72 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTGMTVAEIFEKDGEVRFRSEEKLLVKKLARLKN 72 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcCCcHHHHHHHhChHHHHHHHHHHHHHHhhcCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999875443
No 13
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.77 E-value=3.2e-19 Score=145.91 Aligned_cols=63 Identities=19% Similarity=0.179 Sum_probs=61.1
Q ss_pred CCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcccC
Q 024881 195 STEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEP 257 (261)
Q Consensus 195 mGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~~ 257 (261)
||+||||||+.||++|||+|+|+|.+||+.+|+||++||++.||+.||++|.++|.+++...+
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~ 63 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTGMSISEIFAEEGEEAFRELESEALRELLKENN 63 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHhCCcHHHHHHcCChHHHHHHHHHHHHHHhccCc
Confidence 899999999999999999999999999999999999999999999999999999999997654
No 14
>PRK13946 shikimate kinase; Provisional
Probab=99.75 E-value=3e-18 Score=143.26 Aligned_cols=75 Identities=27% Similarity=0.242 Sum_probs=70.4
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcccC
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEP 257 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~~ 257 (261)
-|+..+|+|+|+|||||||+|+.||++|||+|+|+|.++++..|.++.+||...|++.||++|.+++.++....+
T Consensus 7 ~~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~ 81 (184)
T PRK13946 7 ALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAARMTIAEIFAAYGEPEFRDLERRVIARLLKGGP 81 (184)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCC
Confidence 356789999999999999999999999999999999999999999999999999999999999999999986544
No 15
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=99.71 E-value=4e-17 Score=120.47 Aligned_cols=79 Identities=25% Similarity=0.511 Sum_probs=72.9
Q ss_pred eEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEec-CeEEEEEEe
Q 024881 81 YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDE-DQLVINLKK 159 (261)
Q Consensus 81 Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD-~~lvv~L~K 159 (261)
|.|+|+..+|.|++++|. +.+.+|+.|+++.++|.|.+++...+ ++ |+||++|.+++|+|.+++ +.|+|+|+|
T Consensus 1 y~W~Qt~~~V~i~i~~~~--~~~~~dv~v~~~~~~l~v~~~~~~~~---l~-~~L~~~I~~~~s~w~~~~~~~v~i~L~K 74 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPE--GTKSKDVKVEITPKHLKVGVKGGEPL---LD-GELYAKVKVDESTWTLEDGKLLEITLEK 74 (85)
T ss_pred CEEEeeCCEEEEEEECCC--CCcceeEEEEEEcCEEEEEECCCCce---Ec-CcccCceeEcCCEEEEeCCCEEEEEEEE
Confidence 899999999999999998 57899999999999999999965444 88 999999999999999999 999999999
Q ss_pred cCCCCCC
Q 024881 160 QDPELKW 166 (261)
Q Consensus 160 ~d~~m~W 166 (261)
.++ ..|
T Consensus 75 ~~~-~~~ 80 (85)
T cd06467 75 RNE-GEW 80 (85)
T ss_pred CCC-Ccc
Confidence 998 555
No 16
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.71 E-value=2.8e-17 Score=130.75 Aligned_cols=75 Identities=29% Similarity=0.364 Sum_probs=71.1
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcccC
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEP 257 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~~ 257 (261)
+++|++|+|+|++||||||+|+.||++||+.|+|.|+++++..|.++.+++.++|+..||+.|.+++.++....+
T Consensus 1 ~~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~ 75 (175)
T PRK00131 1 MLKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGKSIPEIFEEEGEAAFRELEEEVLAELLARHN 75 (175)
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCC
Confidence 367899999999999999999999999999999999999999999999999999999999999999999987544
No 17
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.70 E-value=2.5e-17 Score=137.51 Aligned_cols=73 Identities=21% Similarity=0.218 Sum_probs=68.7
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhccc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFE 256 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~ 256 (261)
.+..+|+|+|+||+||||+|+.||+.|||+|+|+|..||+..|.++.++|...|++.||+.|.++|++++...
T Consensus 2 ~~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~ 74 (172)
T PRK05057 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADIGWVFDVEGEEGFRDREEKVINELTEKQ 74 (172)
T ss_pred CCCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCcCHhHHHHHhCHHHHHHHHHHHHHHHHhCC
Confidence 3456899999999999999999999999999999999999999999999999999999999999999987543
No 18
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.68 E-value=9.7e-17 Score=130.36 Aligned_cols=68 Identities=26% Similarity=0.365 Sum_probs=65.3
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhc
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIM 254 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~ 254 (261)
.+|+|+|+||+||||+|+.||++|||+|+|+|+++++..|.++.+++.+.|++.||++|.++++++..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g~~~~~~~~~~g~~~~~~~e~~~~~~~~~ 70 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMTVAEIVEREGWAGFRARESAALEAVTA 70 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 57999999999999999999999999999999999999999999999999999999999999987754
No 19
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.67 E-value=7.7e-17 Score=155.96 Aligned_cols=71 Identities=17% Similarity=0.204 Sum_probs=67.5
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcccC
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEP 257 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~~ 257 (261)
++|+|+|+||+||||+|+.||+.|||.|+|+|++||+..|.+|.+||++.||+.||++|.++|+++....+
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~ 71 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREGRSVRRIFEEDGEEYFRLKEKELLRELVERDN 71 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcCCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999975443
No 20
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=99.64 E-value=1.3e-15 Score=114.73 Aligned_cols=90 Identities=22% Similarity=0.416 Sum_probs=76.0
Q ss_pred CceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEEEE
Q 024881 79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK 158 (261)
Q Consensus 79 ~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~ 158 (261)
.+|.|+|+..+|.|+|++|.....+.+|+.|+++.++|.|.+++.++-.-.+..++||++|+|++|.|.+.++.|+|.|.
T Consensus 2 ~~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L~ 81 (92)
T cd06468 2 TKYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITLA 81 (92)
T ss_pred ceeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEEE
Confidence 48999999999999999998544468999999999999999976332221234389999999999999999999999999
Q ss_pred ecCCCCCCcccccchhHH
Q 024881 159 KQDPELKWPDIVESWESL 176 (261)
Q Consensus 159 K~d~~m~Wp~~~e~We~l 176 (261)
|.++ .| |++|
T Consensus 82 K~~~--~~------W~~L 91 (92)
T cd06468 82 KKKE--KK------WESL 91 (92)
T ss_pred eCCC--Cc------cCcc
Confidence 9998 46 7765
No 21
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.64 E-value=4.6e-16 Score=141.21 Aligned_cols=86 Identities=17% Similarity=0.170 Sum_probs=78.3
Q ss_pred cccchhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHH
Q 024881 169 IVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDV 248 (261)
Q Consensus 169 ~~e~We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~V 248 (261)
+.+-.+.+..-...+=++.+|+|+|+|||||||||+.||++|||+|+|+|..|++..|.++.+||...|++.||++|.++
T Consensus 116 ~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G~~i~ei~~~~G~~~fr~~e~~~ 195 (309)
T PRK08154 116 VRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGLSVSEIFALYGQEGYRRLERRA 195 (309)
T ss_pred HHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhCCCHHHHHHHHCHHHHHHHHHHH
Confidence 44556666666667778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 024881 249 LESLIM 254 (261)
Q Consensus 249 Leels~ 254 (261)
|.++..
T Consensus 196 l~~ll~ 201 (309)
T PRK08154 196 LERLIA 201 (309)
T ss_pred HHHHHh
Confidence 999864
No 22
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.63 E-value=8.1e-16 Score=121.10 Aligned_cols=70 Identities=29% Similarity=0.279 Sum_probs=66.7
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcccC
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEP 257 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~~ 257 (261)
||+|+|++|+||||+|+.||+.|||.++|+|+++++..|.++.++|...|++.||+.|.+++.+++...+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 70 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGMSIPEIFAEEGEEGFRELEREVLLLLLTKEN 70 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHhccCC
Confidence 6999999999999999999999999999999999999999999999999999999999999998886544
No 23
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=99.62 E-value=6.6e-15 Score=104.82 Aligned_cols=79 Identities=27% Similarity=0.521 Sum_probs=69.1
Q ss_pred CceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEEEE
Q 024881 79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK 158 (261)
Q Consensus 79 ~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~ 158 (261)
++|.|.|+..+|.|+|++++. ..+.+|+.|+++.++|.|.++..++-..+++ ++||++|.|++|.|.++++.|+|.|+
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~-~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~-~~L~~~I~~~~s~~~~~~~~i~i~L~ 78 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPV-DISKEDVKVDFTDTSLSVSIKSGDGKEYLLE-GELFGEIDPDESTWKVKDNKIEITLK 78 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTT-TSSGGGEEEEEETTEEEEEEEETTSCEEEEE-EEBSS-BECCCEEEEEETTEEEEEEE
T ss_pred CCeEEEECCCEEEEEEEEcCC-CCChHHeEEEEEeeEEEEEEEccCCceEEEE-EEEeeeEcchhcEEEEECCEEEEEEE
Confidence 489999999999999999663 3789999999999999999985543556688 99999999999999999999999999
Q ss_pred e
Q 024881 159 K 159 (261)
Q Consensus 159 K 159 (261)
|
T Consensus 79 K 79 (79)
T PF04969_consen 79 K 79 (79)
T ss_dssp B
T ss_pred C
Confidence 8
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.53 E-value=4.9e-14 Score=100.46 Aligned_cols=83 Identities=31% Similarity=0.628 Sum_probs=72.8
Q ss_pred EcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEEEEecCC
Q 024881 83 FSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDP 162 (261)
Q Consensus 83 wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~K~d~ 162 (261)
|+|+..+|.|+|++|.. ..+|+.|++++++|+|.+++.+.-...++ ++||++|++++|.|.++++.|.|.|.|.++
T Consensus 1 W~Q~~~~v~i~v~~~~~---~~~~~~v~~~~~~l~i~~~~~~~~~~~~~-~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~ 76 (84)
T cd06463 1 WYQTLDEVTITIPLKDV---TKKDVKVEFTPKSLTVSVKGGGGKEYLLE-GELFGPIDPEESKWTVEDRKIEITLKKKEP 76 (84)
T ss_pred CcccccEEEEEEEcCCC---CccceEEEEecCEEEEEeeCCCCCceEEe-eEccCccchhhcEEEEeCCEEEEEEEECCC
Confidence 89999999999999983 39999999999999999987522233478 889999999999999999999999999998
Q ss_pred CCCCcccccchhHH
Q 024881 163 ELKWPDIVESWESL 176 (261)
Q Consensus 163 ~m~Wp~~~e~We~l 176 (261)
..| |++|
T Consensus 77 -~~~------W~~l 83 (84)
T cd06463 77 -GEW------WPRL 83 (84)
T ss_pred -CCC------Cccc
Confidence 666 7765
No 25
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=99.51 E-value=7.2e-14 Score=109.14 Aligned_cols=87 Identities=20% Similarity=0.352 Sum_probs=76.3
Q ss_pred ceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCC-cceeeeecccccCCCCCCceeeEEecCeEEEEEE
Q 024881 80 QYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSG-SFITLIETNQLFDKIKPTETIWYIDEDQLVINLK 158 (261)
Q Consensus 80 ~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~-~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~ 158 (261)
.|.|+|+..+|.|+|+++. . +|+.|+++.++|.|.+++.+ .-.-.++ ++||++|+|++|.|.++++.|.|+|+
T Consensus 2 ~~~W~Qt~~~V~i~i~~~~--~---~~~~V~~~~~~l~v~~~~~~~~~~y~~~-~~L~~~I~pe~s~~~v~~~kveI~L~ 75 (108)
T cd06465 2 PVLWAQRSDVVYLTIELPD--A---KDPKIKLEPTSLSFKAKGGGGGKKYEFD-LEFYKEIDPEESKYKVTGRQIEFVLR 75 (108)
T ss_pred ceeeeECCCEEEEEEEeCC--C---CCcEEEEECCEEEEEEEcCCCCeeEEEE-eEhhhhccccccEEEecCCeEEEEEE
Confidence 6999999999999999998 2 99999999999999997642 2223477 89999999999999999999999999
Q ss_pred ecCCCCCCcccccchhHHHHH
Q 024881 159 KQDPELKWPDIVESWESLTAG 179 (261)
Q Consensus 159 K~d~~m~Wp~~~e~We~l~~g 179 (261)
|.+. ..| |++|.+|
T Consensus 76 K~~~-~~~------W~~L~~~ 89 (108)
T cd06465 76 KKEA-GEY------WPRLTKE 89 (108)
T ss_pred ECCC-CCC------CcccccC
Confidence 9995 468 9999775
No 26
>PRK09169 hypothetical protein; Validated
Probab=99.51 E-value=1.8e-14 Score=158.01 Aligned_cols=76 Identities=11% Similarity=0.053 Sum_probs=72.2
Q ss_pred HHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhccc
Q 024881 179 GSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFE 256 (261)
Q Consensus 179 g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~ 256 (261)
...+.|.+.+|+||||||+||||||+.||..|||.|+|+|..||+.+|++|.+||+.+| +||++|.++++++..|.
T Consensus 2103 ~~v~rL~~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~GrkI~rIFa~eG--~FRe~Eaa~V~Dllr~~ 2178 (2316)
T PRK09169 2103 ELVERLGAQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKIGKKIARIQALRG--LSPEQAAARVRDALRWE 2178 (2316)
T ss_pred HHHHHHhhcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHhCCCHHHHHHhcC--chHHHHHHHHHHHhcCC
Confidence 35578999999999999999999999999999999999999999999999999999999 99999999999998753
No 27
>PRK03839 putative kinase; Provisional
Probab=99.49 E-value=1.6e-14 Score=118.80 Aligned_cols=62 Identities=19% Similarity=0.065 Sum_probs=57.5
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHH
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESL 252 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeel 252 (261)
.|+|+|+|||||||+|+.||+++||.|+|+|+++++ ..+.+++.++|+..||.+|..+++.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~ 63 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALK---KGIGEEKDDEMEIDFDKLAYFIEEEF 63 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhh---cCCcccCChhhhcCHHHHHHHHHHhc
Confidence 699999999999999999999999999999999976 36889999999999999999998754
No 28
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=99.36 E-value=4.1e-12 Score=93.09 Aligned_cols=81 Identities=21% Similarity=0.376 Sum_probs=70.3
Q ss_pred EEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEEEEecC
Q 024881 82 EFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQD 161 (261)
Q Consensus 82 ~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~K~d 161 (261)
+|+|+.++|.|.|++|+ ...+|+.|+++.++|.|+++..+.-...++ .+||++|.|++|.|.++++.|.|.|.|.+
T Consensus 1 dW~Qt~~~v~i~v~~~~---~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~-~~L~~~I~~~~s~~~~~~~~vei~L~K~~ 76 (84)
T cd06466 1 DWYQTDTSVTVTIYAKN---VDKEDVKVEFNEQSLSVSIILPGGSEYQLE-LDLFGPIDPEQSKVSVLPTKVEITLKKAE 76 (84)
T ss_pred CccccCCEEEEEEEECC---CCHHHCEEEEecCEEEEEEECCCCCeEEEe-cccccccCchhcEEEEeCeEEEEEEEcCC
Confidence 59999999999999996 668999999999999999886422223477 78999999999999999999999999999
Q ss_pred CCCCCc
Q 024881 162 PELKWP 167 (261)
Q Consensus 162 ~~m~Wp 167 (261)
+ +.||
T Consensus 77 ~-~~W~ 81 (84)
T cd06466 77 P-GSWP 81 (84)
T ss_pred C-CCCc
Confidence 8 5554
No 29
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.28 E-value=1.6e-11 Score=89.38 Aligned_cols=71 Identities=20% Similarity=0.309 Sum_probs=63.8
Q ss_pred EcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEEEEecCC
Q 024881 83 FSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDP 162 (261)
Q Consensus 83 wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~K~d~ 162 (261)
|+|+..+|.|++.+|+ .+.+|+.|++++++|+|.. .+ . .++ ++||++|+|++|.|.+++..|+|+|.|.++
T Consensus 1 W~Qt~~~v~i~i~~p~---v~~~~v~v~~~~~~l~i~~--~~-~--~~~-~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~ 71 (78)
T cd06469 1 WSQTDEDVKISVPLKG---VKTSKVDIFCSDLYLKVNF--PP-Y--LFE-LDLAAPIDDEKSSAKIGNGVLVFTLVKKEP 71 (78)
T ss_pred CcccCCEEEEEEEeCC---CccccceEEEecCEEEEcC--CC-E--EEE-EeCcccccccccEEEEeCCEEEEEEEeCCC
Confidence 8999999999999997 5789999999999998866 22 3 256 799999999999999999999999999988
No 30
>PRK14532 adenylate kinase; Provisional
Probab=99.22 E-value=1.2e-11 Score=102.21 Aligned_cols=66 Identities=20% Similarity=0.181 Sum_probs=58.7
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLI 253 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VLeels 253 (261)
++|+|+|+|||||||+|+.||+.+|+.++|+|++|.+. .|+.+.++++ .|+..++++-.+++.+..
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~ 72 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMD-RGELVSDEIVIALIEERL 72 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHH-CCCccCHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999984 6677999988 799999998888777654
No 31
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=99.22 E-value=7.4e-11 Score=88.16 Aligned_cols=83 Identities=16% Similarity=0.344 Sum_probs=70.8
Q ss_pred EEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEEEEecC
Q 024881 82 EFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQD 161 (261)
Q Consensus 82 ~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~K~d 161 (261)
.|.|+.+.|.|+|.++. ...+|+.|+++.++|.|.+++...-.-.++ .+||+.|.|++|.|.+.+..|.|.|+|.+
T Consensus 1 dW~Q~~~~V~iti~~k~---~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~-~~L~~~I~p~~s~~~v~~~kiei~L~K~~ 76 (84)
T cd06489 1 DWYQTESQVVITILIKN---VKPEDVSVEFEKRELSATVKLPSGNDYSLK-LHLLHPIVPEQSSYKILSTKIEIKLKKTE 76 (84)
T ss_pred CccccCCEEEEEEEECC---CCHHHCEEEEeCCEEEEEEECCCCCcEEEe-eecCceecchhcEEEEeCcEEEEEEEcCC
Confidence 49999999999999886 567999999999999999976432223477 79999999999999999999999999998
Q ss_pred CCCCCccc
Q 024881 162 PELKWPDI 169 (261)
Q Consensus 162 ~~m~Wp~~ 169 (261)
+ ..||.+
T Consensus 77 ~-~~W~~L 83 (84)
T cd06489 77 A-IRWSKL 83 (84)
T ss_pred C-CCCccC
Confidence 7 666543
No 32
>PRK04182 cytidylate kinase; Provisional
Probab=99.18 E-value=6e-11 Score=95.41 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=49.2
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH---hCCCHHHHHHhhCchhH---HhhHHHHH
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF---AKQTIDSWMLAEGSDSV---VNGECDVL 249 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~---agkSI~eIFaeeGE~~F---RelEs~VL 249 (261)
.|.|+|+|||||||+|+.||++|||+++|+|+++... .|.++.+++ +.|+..+ +.++..+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~ 68 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFN-KYAEEDPEIDKEIDRRQL 68 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHH-HHhhcCchHHHHHHHHHH
Confidence 6999999999999999999999999999998876654 578888887 4566555 45554443
No 33
>PRK14530 adenylate kinase; Provisional
Probab=99.12 E-value=8e-11 Score=100.40 Aligned_cols=70 Identities=14% Similarity=0.126 Sum_probs=57.8
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhC---------chhHHhhHHHHHHHHh
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEG---------SDSVVNGECDVLESLI 253 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeG---------E~~FRelEs~VLeels 253 (261)
+.|.+|+|+|++||||||+|+.||+.+||.++|++++|++..+++|++++.+.| +....+++.++|++..
T Consensus 1 ~~~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l 79 (215)
T PRK14530 1 MSQPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEAL 79 (215)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 457789999999999999999999999999999999999999888877765544 3344557777776654
No 34
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.97 E-value=8.3e-11 Score=98.26 Aligned_cols=67 Identities=12% Similarity=0.116 Sum_probs=62.0
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLES 251 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLee 251 (261)
+|..|+|+|+||+||||+++.||..++..+++.|..+++...+.+.++|...+++.||.+|...+.+
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFAL 67 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhh
Confidence 4778999999999999999999999999999999999998888899999999999999998887753
No 35
>PRK06217 hypothetical protein; Validated
Probab=98.93 E-value=6.1e-10 Score=92.84 Aligned_cols=62 Identities=18% Similarity=0.103 Sum_probs=46.7
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhc
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIM 254 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~ 254 (261)
++|.|+|.|||||||+|+.||+.||++++|+|+++.+..+.+ +..+++..++ +..+++.+..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~ 63 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPP----FTTKRPPEER--LRLLLEDLRP 63 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCCC----ccccCCHHHH--HHHHHHHHhc
Confidence 469999999999999999999999999999999998766543 2233444333 4455555543
No 36
>PRK13975 thymidylate kinase; Provisional
Probab=98.93 E-value=7.9e-10 Score=91.29 Aligned_cols=65 Identities=22% Similarity=0.146 Sum_probs=54.5
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcC--CCccCcHHHHHHH----------hCCCHHHHHHhhCchhHHhhHHHHHH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKELLETF----------AKQTIDSWMLAEGSDSVVNGECDVLE 250 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~Lg--Y~fvDTDeLIEq~----------agkSI~eIFaeeGE~~FRelEs~VLe 250 (261)
|+-|++.|++|+||||+++.||++|+ +.+.++|..+.+. .++++..+|+.+|++.||++|.....
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~~~~ 78 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEEDLKK 78 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 67899999999999999999999999 6777777555542 55678889999999999999876543
No 37
>PRK01184 hypothetical protein; Provisional
Probab=98.80 E-value=4.7e-09 Score=86.58 Aligned_cols=58 Identities=12% Similarity=0.066 Sum_probs=45.6
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh-CCCHHHHHHhhCchhHHhhHH
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA-KQTIDSWMLAEGSDSVVNGEC 246 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a-gkSI~eIFaeeGE~~FRelEs 246 (261)
.|.|+|+|||||||+++ +|+.+||.++|+++++.+.. +..++.++++.|+..++..|.
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~ 61 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKE 61 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHH
Confidence 58999999999999998 78999999999988887664 344555666667766665543
No 38
>PLN02674 adenylate kinase
Probab=98.77 E-value=1.8e-08 Score=91.01 Aligned_cols=71 Identities=10% Similarity=0.039 Sum_probs=64.0
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHHHHHhcc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLIMF 255 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VLeels~~ 255 (261)
....+|+|+|++||||+|+|+.||+.+|+.++++.++|.+. .|+.|.+++. +|+-.+.++...++.+....
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~-~G~lvpd~iv~~lv~~~l~~ 105 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDEAMKK 105 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHH-cCCccCHHHHHHHHHHHHhC
Confidence 33578999999999999999999999999999999999887 7888999986 99999999999998887643
No 39
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=98.76 E-value=7.7e-08 Score=73.26 Aligned_cols=84 Identities=15% Similarity=0.279 Sum_probs=69.1
Q ss_pred ceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEEEEe
Q 024881 80 QYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKK 159 (261)
Q Consensus 80 ~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~K 159 (261)
+|.|.|+.+.|-|.|-+.. ...+++.|+++.++|.|.++-.+.-.-.++ -+||++|.|++|.|.+....|.|.|+|
T Consensus 2 R~dW~Qs~~~V~ItI~~k~---~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~-l~L~~~I~~~~s~~~v~~~kvei~L~K 77 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKN---SNPELSVVEANSTVLTIHIVFEGNKEFQLD-IELWGVIDVEKSSVNMLPTKVEIKLRK 77 (87)
T ss_pred CccEeeCCCEEEEEEEECc---CCccceEEEecCCEEEEEEECCCCceEEEE-eeccceEChhHcEEEecCcEEEEEEEe
Confidence 6999999999999998864 567899999999999886643322122466 489999999999999999999999999
Q ss_pred cCCCCCCcc
Q 024881 160 QDPELKWPD 168 (261)
Q Consensus 160 ~d~~m~Wp~ 168 (261)
.++ ..||.
T Consensus 78 ~~~-~~W~~ 85 (87)
T cd06488 78 AEP-GSWAK 85 (87)
T ss_pred CCC-CcCcc
Confidence 998 46654
No 40
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.73 E-value=4.8e-08 Score=78.23 Aligned_cols=45 Identities=20% Similarity=0.210 Sum_probs=38.8
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh---CCCHHHH
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSW 232 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a---gkSI~eI 232 (261)
-|.+.|++||||||+|+.||+.|||+++|.|+++...+ |.++.++
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~ 49 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEF 49 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHH
Confidence 48999999999999999999999999999998877665 4555553
No 41
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.72 E-value=7.9e-09 Score=83.52 Aligned_cols=64 Identities=16% Similarity=0.069 Sum_probs=49.2
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHH-----H-hCCCHHHHHHhhCchhHHhhHHHHHHHHhcc
Q 024881 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET-----F-AKQTIDSWMLAEGSDSVVNGECDVLESLIMF 255 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq-----~-agkSI~eIFaeeGE~~FRelEs~VLeels~~ 255 (261)
|+|+|.+||||||+++.||+.||+.++|.|++... . .|.... ..++++.|+.++..+...+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~ 70 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLN---DDDRWPWLQNLNDASTAAAAKN 70 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCC---hhhHHHHHHHHHHHHHHHHhcC
Confidence 57999999999999999999999999999998432 2 244333 3566778888877777665544
No 42
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.72 E-value=1.7e-08 Score=82.60 Aligned_cols=65 Identities=20% Similarity=0.319 Sum_probs=53.0
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh------CCCHHHHHHhhCchhHHhhHHHHHHHHhc
Q 024881 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLESLIM 254 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a------gkSI~eIFaeeGE~~FRelEs~VLeels~ 254 (261)
|+++|++||||||+|+.||+.+|+..+++++++.+.. |+.+.+.+ +.|+....++..++|.+...
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~ll~~~~~ 72 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMI-KNGKIVPSEVTVKLLKNAIQ 72 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHH-HCCCcCCHHHHHHHHHHHHh
Confidence 7899999999999999999999999999988886543 23355654 68888888888888876543
No 43
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.71 E-value=1.5e-08 Score=82.92 Aligned_cols=63 Identities=21% Similarity=0.190 Sum_probs=47.4
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh------CCCHHHHHHhhCchhHHhhHHHHHHH
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLES 251 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a------gkSI~eIFaeeGE~~FRelEs~VLee 251 (261)
+|+|+|++||||||+++.||+.+|+.++++|+++.+.. |+.+.+.+. +|+....++...++.+
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~l~~~ 69 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYID-SGKLVPDEIVIKLLKE 69 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHH-cCCccCHHHHHHHHHH
Confidence 48999999999999999999999999999999997763 334555543 3555555554444443
No 44
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.69 E-value=2.6e-08 Score=88.36 Aligned_cols=69 Identities=17% Similarity=0.135 Sum_probs=51.8
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCC------CHHHHHHhhCc----hhHHhhHHHHHHH
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ------TIDSWMLAEGS----DSVVNGECDVLES 251 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agk------SI~eIFaeeGE----~~FRelEs~VLee 251 (261)
++..+++|+|+|+|||||||+|+.||+.+|+.+++++++|.+..+. .+.++ .+.|. +.+.++-.+-|.+
T Consensus 2 ~~~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~-~~~G~lvpd~iv~~lv~~~l~~ 80 (229)
T PTZ00088 2 KLKGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKV-VTSGNLVPDNLVIAIVKDEIAK 80 (229)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHH-HHcCCcCCHHHHHHHHHHHHHh
Confidence 4566788999999999999999999999999999999999876433 45555 34453 4444444444444
No 45
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.69 E-value=1.3e-08 Score=77.78 Aligned_cols=33 Identities=30% Similarity=0.482 Sum_probs=31.7
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCccCcHHHH
Q 024881 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELL 221 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLI 221 (261)
|+++|.+||||||+++.||+.+|+.+++.|+++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~ 34 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDDLI 34 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence 789999999999999999999999999999965
No 46
>PLN02165 adenylate isopentenyltransferase
Probab=98.69 E-value=2.6e-08 Score=94.06 Aligned_cols=76 Identities=8% Similarity=0.140 Sum_probs=68.5
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHH--------------HHHHhCCC---HHHHHHhhCc---hhH
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQT---IDSWMLAEGS---DSV 241 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeL--------------IEq~agkS---I~eIFaeeGE---~~F 241 (261)
.--+|..|+|+|++|||||+++..||+.+|+.++|.|.+ .+...|.. ++.++.++|+ ..|
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F 118 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEF 118 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHH
Confidence 455677899999999999999999999999999999999 88889988 9999888888 899
Q ss_pred HhhHHHHHHHHhcccC
Q 024881 242 VNGECDVLESLIMFEP 257 (261)
Q Consensus 242 RelEs~VLeels~~~~ 257 (261)
++.+.++++++.+..+
T Consensus 119 ~~~a~~~I~~i~~~~~ 134 (334)
T PLN02165 119 RSLASLSISEITSRQK 134 (334)
T ss_pred HHHHHHHHHHHHHCCC
Confidence 9999999999876554
No 47
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=98.68 E-value=1.1e-07 Score=65.47 Aligned_cols=71 Identities=23% Similarity=0.355 Sum_probs=62.7
Q ss_pred EcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccC---------CcceeeeecccccCCCCCCceeeEEecCeE
Q 024881 83 FSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRS---------GSFITLIETNQLFDKIKPTETIWYIDEDQL 153 (261)
Q Consensus 83 wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~---------~~~~tlId~g~L~~kIk~~Et~W~IdD~~l 153 (261)
|.|+.+.+.++|++|+ ...+++.|+++.++|.|..+.. ..+ ..+ -+|+..|.++++.|.++++.|
T Consensus 1 ~~q~~~~v~i~i~~~~---~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~--~~~-~~L~~~i~~~~~~~~~~~~~l 74 (80)
T cd00298 1 WYQTDDEVVVTVDLPG---VKKEDIKVEVEDNVLTISGKREEEEERERSYGEF--ERS-FELPEDVDPEKSKASLENGVL 74 (80)
T ss_pred CEEcCCEEEEEEECCC---CCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeE--EEE-EECCCCcCHHHCEEEEECCEE
Confidence 7899999999999999 4599999999999999999875 233 245 669999999999999999999
Q ss_pred EEEEEe
Q 024881 154 VINLKK 159 (261)
Q Consensus 154 vv~L~K 159 (261)
.|.|.|
T Consensus 75 ~i~l~K 80 (80)
T cd00298 75 EITLPK 80 (80)
T ss_pred EEEEcC
Confidence 999987
No 48
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.68 E-value=1.8e-08 Score=80.24 Aligned_cols=62 Identities=19% Similarity=0.116 Sum_probs=48.4
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHH------HhCCCHHHHHHhhCchhHHhhHHHHHHHHh
Q 024881 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET------FAKQTIDSWMLAEGSDSVVNGECDVLESLI 253 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq------~agkSI~eIFaeeGE~~FRelEs~VLeels 253 (261)
|+|+|.+||||||+|+.||+.+|..++|.|.+++. ..|...+ ..++++.++++.....+.+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~ 69 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLN---DEDRWPWLQALTDALLAKLA 69 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCC---ccchhhHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999874 3333222 23467788888766666553
No 49
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.64 E-value=2.7e-08 Score=93.77 Aligned_cols=57 Identities=18% Similarity=0.140 Sum_probs=49.2
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCC------ccCcHHHH-----HHHhCCCHHHHHHhhCchhHHhhHHHHHH
Q 024881 189 IFLVGDSTEVNEKVALELAVGLGYT------PLSTKELL-----ETFAKQTIDSWMLAEGSDSVVNGECDVLE 250 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~LgY~------fvDTDeLI-----Eq~agkSI~eIFaeeGE~~FRelEs~VLe 250 (261)
++|+|.||+||||+|+.||.+|+.. ++|.|++| |..+|++|++|| ..||+.=.+.|+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~-----k~~R~~i~~~le 69 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQW-----KQFRQELLKYLE 69 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHH-----HHHHHHHHHHHH
Confidence 5799999999999999999998865 99999999 999999999999 788854333333
No 50
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.62 E-value=1e-08 Score=102.39 Aligned_cols=69 Identities=9% Similarity=0.122 Sum_probs=64.6
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHH-HHHHhhCchhHHhhHHHHHHHHhc
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTID-SWMLAEGSDSVVNGECDVLESLIM 254 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~-eIFaeeGE~~FRelEs~VLeels~ 254 (261)
...|.+||+||+||||||+.||+.|+|.++|+|.+++...++.+. ++|...|+..||++|.+++.+++.
T Consensus 215 ~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 284 (664)
T PTZ00322 215 SLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGAVSSPTGAAEVEFRIAKAIAH 284 (664)
T ss_pred ceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCCcCCCCCHHHHHHHHHHHHHH
Confidence 346999999999999999999999999999999999999999998 789999999999999999988874
No 51
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=98.61 E-value=6.7e-08 Score=91.59 Aligned_cols=51 Identities=25% Similarity=0.254 Sum_probs=46.0
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCC---CHHHHHHhhCch
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ---TIDSWMLAEGSD 239 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agk---SI~eIFaeeGE~ 239 (261)
.|.|+|++|||||||++.||+ +|+.++|+|+++.++... .+.+|+..-|++
T Consensus 3 ~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~ 56 (395)
T PRK03333 3 RIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDD 56 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChH
Confidence 599999999999999999998 899999999999997654 467888888888
No 52
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.59 E-value=4.3e-08 Score=83.43 Aligned_cols=54 Identities=19% Similarity=0.156 Sum_probs=46.9
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh---CCCHHHHHHhhCchhHH
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSWMLAEGSDSVV 242 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a---gkSI~eIFaeeGE~~FR 242 (261)
.|.|+|.+||||||+++.|++ +||.++|+|++..+.. +..+.+|++.-|++.|.
T Consensus 4 ~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~ 60 (194)
T PRK00081 4 IIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILD 60 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcC
Confidence 599999999999999999999 9999999999999885 34567777777877764
No 53
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=98.58 E-value=7.5e-08 Score=84.65 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=49.5
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCC--CHHHHHHhhCchhH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ--TIDSWMLAEGSDSV 241 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agk--SI~eIFaeeGE~~F 241 (261)
..|.|+|.+|||||||++.|++.||+.++|+|.+..+..+. .+.+|++.-|++.+
T Consensus 7 ~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~ 63 (204)
T PRK14733 7 YPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIV 63 (204)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhc
Confidence 36999999999999999999999999999999999999765 36789999998876
No 54
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.57 E-value=7.2e-08 Score=79.23 Aligned_cols=54 Identities=22% Similarity=0.158 Sum_probs=44.4
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcC-----CCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECD 247 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg-----Y~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~ 247 (261)
+|..|.|+|+|||||||+++.|++.|+ ..++|.|.+ .++|...|.+.+++.|..
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~---------r~~~~~~~~~~~~~~~~~ 64 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL---------REILGHYGYDKQSRIEMA 64 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH---------HhhcCCCCCCHHHHHHHH
Confidence 678899999999999999999999996 678887775 456666777777776654
No 55
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.54 E-value=9e-08 Score=81.75 Aligned_cols=65 Identities=17% Similarity=0.136 Sum_probs=50.9
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESL 252 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VLeel 252 (261)
+.|+++|++||||||+++.||+.+|+..+++++++.+. .|+.+.+++. +|+....++..+++.+.
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~-~g~~~p~~~~~~~i~~~ 71 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMD-AGELVPDEIVIGLVKER 71 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHH-cCCcCCHHHHHHHHHHH
Confidence 36999999999999999999999999999999999765 3345666644 56666666666655543
No 56
>PRK02496 adk adenylate kinase; Provisional
Probab=98.54 E-value=1.3e-07 Score=78.20 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=50.9
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh------CCCHHHHHHhhCchhHHhhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLESLI 253 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a------gkSI~eIFaeeGE~~FRelEs~VLeels 253 (261)
+.|+++|.+||||||+++.||+.+|+..+++++++.+.. |.-+.++ ..+|+....++...++.+-.
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~-~~~g~~~~~~~~~~~l~~~l 73 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGY-MDKGELVPDQLVLDLVQERL 73 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHH-HHCCCccCHHHHHHHHHHHH
Confidence 469999999999999999999999999999999987653 2223333 35677777777777665543
No 57
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.52 E-value=9.1e-08 Score=74.45 Aligned_cols=65 Identities=18% Similarity=0.041 Sum_probs=42.5
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhccc
Q 024881 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFE 256 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~ 256 (261)
|.++|.+||||||+|+.||+.+|++++|.|.+-+...+.-...+. ....+++.-.+.+++++...
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~~~~~~~---~~~~i~~~l~~~~~~~~~~~ 66 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLASEVA---AIPEVRKALDERQRELAKKP 66 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHHHHHHhc---ccHhHHHHHHHHHHHHhhCC
Confidence 789999999999999999999999999999443322111111110 11345555556666665443
No 58
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.51 E-value=1.2e-07 Score=83.62 Aligned_cols=67 Identities=15% Similarity=0.042 Sum_probs=50.9
Q ss_pred ceEEEEecCCCchhHHHHHHHHhc-CCCccCcHHHHHHHhCCCHH--HHHHhhCchhHHhhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELLETFAKQTID--SWMLAEGSDSVVNGECDVLESLI 253 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~L-gY~fvDTDeLIEq~agkSI~--eIFaeeGE~~FRelEs~VLeels 253 (261)
.-|+|+|.+||||||+|+.||+++ |+.++|+|++.+...+.... ..+..++++.++++..+.+.+..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 72 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAAL 72 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999999999 99999999998887654321 12344556666767666666554
No 59
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=98.50 E-value=1e-06 Score=70.62 Aligned_cols=87 Identities=20% Similarity=0.256 Sum_probs=72.7
Q ss_pred CceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEcc-CCcceeeeecccccCCCCCCceeeEEecCeEEEEE
Q 024881 79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNR-SGSFITLIETNQLFDKIKPTETIWYIDEDQLVINL 157 (261)
Q Consensus 79 ~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~-~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L 157 (261)
+.+.|.|+...|-|.|.++. .+|+.|+++.++|.+..++ +|.- -.++ -+||+.|.|++|...+-+..|.+.|
T Consensus 2 p~v~WaQr~~~V~ltI~v~d-----~~d~~v~l~~~~l~f~~~~~~g~~-y~~~-l~l~~~I~pe~Sk~~v~~r~ve~~L 74 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED-----SKDVKVDFEKSKLTFSCLNGDNVK-IYNE-IELYDRVDPNDSKHKRTDRSILCCL 74 (106)
T ss_pred CcceeeECCCEEEEEEEeCC-----CCCcEEEEecCEEEEEEECCCCcE-EEEE-EEeecccCcccCeEEeCCceEEEEE
Confidence 35789999999999998887 5899999999999998865 3322 2244 6899999999999999999999999
Q ss_pred EecCCCCCCcccccchhHHHHH
Q 024881 158 KKQDPELKWPDIVESWESLTAG 179 (261)
Q Consensus 158 ~K~d~~m~Wp~~~e~We~l~~g 179 (261)
+|.+. -.| |+.|++.
T Consensus 75 ~K~~~-~~~------WprL~k~ 89 (106)
T cd00237 75 RKGKE-GVA------WPRLTKE 89 (106)
T ss_pred EeCCC-CCC------CchhhcC
Confidence 99986 457 8888874
No 60
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.50 E-value=9.1e-08 Score=95.00 Aligned_cols=69 Identities=17% Similarity=0.098 Sum_probs=51.9
Q ss_pred chhHHHHHHH-hhcCCceEEEEecCCCchhHHHHHHHHhcCC------CccCcHHHHHHHhCCCHHHHHHhhCchhHHhh
Q 024881 172 SWESLTAGSM-QLLKGTSIFLVGDSTEVNEKVALELAVGLGY------TPLSTKELLETFAKQTIDSWMLAEGSDSVVNG 244 (261)
Q Consensus 172 ~We~l~~g~~-~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY------~fvDTDeLIEq~agkSI~eIFaeeGE~~FRel 244 (261)
-|+-|...-. ..-+|..|+|+|+|||||||+|+.||++|+. .++|.|.+-... .||.+|++.
T Consensus 377 V~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l-----------~ge~~f~~~ 445 (568)
T PRK05537 377 VVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHL-----------SSELGFSKE 445 (568)
T ss_pred HHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhc-----------cCCCCCCHH
Confidence 3444444333 3346778999999999999999999999997 999999774333 267889998
Q ss_pred HHHHHHH
Q 024881 245 ECDVLES 251 (261)
Q Consensus 245 Es~VLee 251 (261)
|.+...+
T Consensus 446 er~~~~~ 452 (568)
T PRK05537 446 DRDLNIL 452 (568)
T ss_pred HHHHHHH
Confidence 8875444
No 61
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.49 E-value=1e-07 Score=74.27 Aligned_cols=38 Identities=29% Similarity=0.337 Sum_probs=36.6
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhC
Q 024881 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK 226 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~ag 226 (261)
|+++|++||||||+++.||+.+|+.++|.|++..++.+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~ 39 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAG 39 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcc
Confidence 78999999999999999999999999999999998887
No 62
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.48 E-value=2e-07 Score=75.74 Aligned_cols=48 Identities=25% Similarity=0.339 Sum_probs=39.1
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWML 234 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFa 234 (261)
.-|.++|.+||||||+++.||+.+|+.++++++++-+. .++.+.+++.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 57 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIME 57 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 35899999999999999999999999999999887554 2344555554
No 63
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.47 E-value=2.2e-07 Score=81.07 Aligned_cols=62 Identities=18% Similarity=0.149 Sum_probs=49.2
Q ss_pred EEEEecCCCchhHHHHHHHHhc---C--CCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhccc
Q 024881 189 IFLVGDSTEVNEKVALELAVGL---G--YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFE 256 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~L---g--Y~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~ 256 (261)
|+|+|.|||||||+|+.||+.| | +..+|.|.+-+... .+.+.+|+.+|+.+.+++++.....
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~------~~~~~~e~~~~~~~~~~i~~~l~~~ 68 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFP------VWKEKYEEFIRDSTLYLIKTALKNK 68 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhH------HhhHHhHHHHHHHHHHHHHHHHhCC
Confidence 7899999999999999999988 3 45778888876542 2345788999999888888776543
No 64
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.46 E-value=1.7e-07 Score=78.39 Aligned_cols=51 Identities=22% Similarity=0.215 Sum_probs=43.0
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhC---CCHHHHHHhhCchh
Q 024881 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK---QTIDSWMLAEGSDS 240 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~ag---kSI~eIFaeeGE~~ 240 (261)
|.|+|++||||||+++.|++ +||..+|+|++..+... ....+|+..-|++.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~ 55 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDI 55 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcce
Confidence 78999999999999999999 99999999999988765 34466666666654
No 65
>PRK06547 hypothetical protein; Provisional
Probab=98.45 E-value=1.6e-07 Score=79.78 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=45.1
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCC-----HHHHHHhhCchhHHh
Q 024881 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT-----IDSWMLAEGSDSVVN 243 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkS-----I~eIFaeeGE~~FRe 243 (261)
|.+.|.+||||||+++.||+.+|+.+++.|.+.....+.+ +.++|.++|+..++.
T Consensus 18 i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~~~l~~g~~~~~~ 77 (172)
T PRK06547 18 VLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHGLAAASEHVAEAVLDEGRPGRWR 77 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeecccceecccccCChHHHHHHHHHHhCCCCceec
Confidence 5555999999999999999999999999999987655544 667777788776643
No 66
>PRK08118 topology modulation protein; Reviewed
Probab=98.44 E-value=2.5e-07 Score=77.49 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=34.1
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHH
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET 223 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq 223 (261)
.|+++|++||||||+|+.||+.+|+++++.|+++.+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 699999999999999999999999999999999854
No 67
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.42 E-value=2.7e-07 Score=77.20 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=35.7
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCC
Q 024881 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ 227 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agk 227 (261)
|.|+|.+|||||||++.|++..||.++|+|++..+....
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~ 40 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEK 40 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhc
Confidence 789999999999999999999889999999998776643
No 68
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.42 E-value=1.7e-07 Score=91.64 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=56.1
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCcH--HHHH-HHhCCCHHHHHHhhCchhHHhhHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK--ELLE-TFAKQTIDSWMLAEGSDSVVNGEC 246 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTD--eLIE-q~agkSI~eIFaeeGE~~FRelEs 246 (261)
...+|.|+|++|+|||++++.||+.+|.+|++.| +++| ...|+.+++++...++++||..+.
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~ 110 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKE 110 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999 6777 689999999999999999885543
No 69
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.34 E-value=6.4e-07 Score=76.94 Aligned_cols=39 Identities=21% Similarity=0.067 Sum_probs=36.2
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhC
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK 226 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~ag 226 (261)
.|.|+|++||||||+++.|++.+|+.++|+|++..+...
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~ 41 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALA 41 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHh
Confidence 589999999999999999999999999999999888753
No 70
>PRK14531 adenylate kinase; Provisional
Probab=98.33 E-value=7e-07 Score=74.74 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=34.5
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF 224 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~ 224 (261)
+|+++|++||||||+++.||+.+|+.+++++++|.+.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~ 40 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSE 40 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHH
Confidence 6999999999999999999999999999998888654
No 71
>PRK14526 adenylate kinase; Provisional
Probab=98.27 E-value=1.4e-06 Score=76.31 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=47.8
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVL 249 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VL 249 (261)
++|+|+|++||||||+++.||+.+|+.++++++++.+. .|+.+.+++ +.|+-.--++-.+++
T Consensus 1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~-~~g~lvpd~~~~~lv 68 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIV-ENGQLVPDSITIKIV 68 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHH-HcCccCChHHHHHHH
Confidence 36999999999999999999999999999999998763 446688886 456544333333333
No 72
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.24 E-value=6.7e-06 Score=76.43 Aligned_cols=83 Identities=22% Similarity=0.376 Sum_probs=70.4
Q ss_pred CceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEEEE
Q 024881 79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK 158 (261)
Q Consensus 79 ~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~ 158 (261)
.+|.|.|+.+.|-|.|-+.+ ....++.|+++.++|.|.+...+.-.-.++ .+||++|.|++|...+--..|.|.|+
T Consensus 157 ~r~dWyQs~~~V~i~i~~k~---~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~-~~L~~~I~p~~s~~~v~~~Kiei~l~ 232 (356)
T PLN03088 157 YRHEFYQKPEEVVVTVFAKG---VPAENVNVDFGEQILSVVIEVPGEDAYHLQ-PRLFGKIIPDKCKYEVLSTKIEIRLA 232 (356)
T ss_pred cccceeecCCEEEEEEEecC---CChHHcEEEeecCEEEEEEecCCCcceeec-ccccccccccccEEEEecceEEEEEe
Confidence 58999999999999998886 567899999999999998864332112355 69999999999999999999999999
Q ss_pred ecCCCCCC
Q 024881 159 KQDPELKW 166 (261)
Q Consensus 159 K~d~~m~W 166 (261)
|.++ .+|
T Consensus 233 K~~~-~~W 239 (356)
T PLN03088 233 KAEP-ITW 239 (356)
T ss_pred cCCC-CCc
Confidence 9998 666
No 73
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.19 E-value=2.4e-06 Score=72.78 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=34.6
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF 224 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~ 224 (261)
+|+++|++||||||+++.||+.+|+..+++++|+-+.
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~ 37 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAE 37 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHh
Confidence 4899999999999999999999999999999998664
No 74
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.17 E-value=2e-06 Score=71.22 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=35.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCcc--CcHHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPL--STKELLETFA 225 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv--DTDeLIEq~a 225 (261)
+|.-|+|+|++||||||+++.|++.++..++ +.|.+++..-
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~ 43 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALP 43 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcC
Confidence 4778999999999999999999999987765 8998887643
No 75
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.12 E-value=2.8e-06 Score=74.59 Aligned_cols=38 Identities=29% Similarity=0.288 Sum_probs=34.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLE 222 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIE 222 (261)
+.+.|.++|++||||||+|+.||+.|||.++|++.+.-
T Consensus 3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r 40 (225)
T PRK00023 3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYR 40 (225)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHH
Confidence 45689999999999999999999999999999999843
No 76
>PRK14527 adenylate kinase; Provisional
Probab=98.12 E-value=5e-06 Score=69.72 Aligned_cols=40 Identities=28% Similarity=0.357 Sum_probs=36.7
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF 224 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~ 224 (261)
+|.-|.++|.+||||||+++.||+.+|+..+++++++-+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~ 44 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDH 44 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 5677999999999999999999999999999999998553
No 77
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.11 E-value=2.1e-06 Score=70.60 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=35.7
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc---C--CCccCcHHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKELLETFA 225 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L---g--Y~fvDTDeLIEq~a 225 (261)
+|..|.|+|.||+||||+++.||..| | ..++|.|.+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~ 48 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLS 48 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHh
Confidence 57789999999999999999999998 3 67899998876654
No 78
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.09 E-value=2.1e-06 Score=85.98 Aligned_cols=58 Identities=24% Similarity=0.297 Sum_probs=46.8
Q ss_pred CCcccccchhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH
Q 024881 165 KWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF 224 (261)
Q Consensus 165 ~Wp~~~e~We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~ 224 (261)
-||+..|.|+.|...=. =+...|.+.|+.||||||+|+.||++|||.++|++.+--..
T Consensus 423 syP~F~~~l~~Lg~~~~--~~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~ 480 (661)
T PRK11860 423 TFPDYFEALFSVAQADA--DRVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT 480 (661)
T ss_pred CCCChHHHHHHhcCCcc--cCcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence 57777777777653321 12447999999999999999999999999999999987766
No 79
>PRK07261 topology modulation protein; Provisional
Probab=98.07 E-value=1.9e-06 Score=72.25 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=32.3
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL 221 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLI 221 (261)
+.|.++|++||||||+++.||+.+|++.++.|.+-
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 36999999999999999999999999999998764
No 80
>PRK14529 adenylate kinase; Provisional
Probab=98.05 E-value=5.8e-06 Score=73.81 Aligned_cols=65 Identities=5% Similarity=0.072 Sum_probs=50.6
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh------CCCHHHHHHhhCchhHHhhHHHHHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLESL 252 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a------gkSI~eIFaeeGE~~FRelEs~VLeel 252 (261)
++|+|+|++||||+|+++.||+.+|+.++++-+++.+.. |+.+.++. +.|+-.--++-.+++.+-
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i-~~G~lvpdei~~~lv~~~ 71 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYI-DRGDLVPDDITIPMILET 71 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHH-hccCcchHHHHHHHHHHH
Confidence 379999999999999999999999999999999987643 34566664 567766666655555443
No 81
>PLN02200 adenylate kinase family protein
Probab=98.05 E-value=4.5e-06 Score=73.96 Aligned_cols=39 Identities=18% Similarity=0.293 Sum_probs=35.5
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET 223 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq 223 (261)
+...|+++|++||||||+++.||+.+|+..+++++++.+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~ 80 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRR 80 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHH
Confidence 346799999999999999999999999999999888854
No 82
>PRK13808 adenylate kinase; Provisional
Probab=98.05 E-value=7.4e-06 Score=77.50 Aligned_cols=49 Identities=20% Similarity=0.231 Sum_probs=42.4
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLA 235 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFae 235 (261)
++|+|+|++||||+|+++.||+.+|+.++|++++|... .|..+.+++..
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~ 55 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMAS 55 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHc
Confidence 47999999999999999999999999999999999764 56667777643
No 83
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.04 E-value=2.6e-06 Score=75.46 Aligned_cols=40 Identities=23% Similarity=0.313 Sum_probs=35.2
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHH-----HHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL-----LETFA 225 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeL-----IEq~a 225 (261)
+++ ||+.|.+|+||||||++|++.||+.|+|.|++ +|+..
T Consensus 12 k~~-i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~ 56 (191)
T KOG3354|consen 12 KYV-IVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMT 56 (191)
T ss_pred cee-EEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHh
Confidence 444 99999999999999999999999999999987 55554
No 84
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.04 E-value=3.8e-06 Score=67.65 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=33.4
Q ss_pred EEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881 191 LVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (261)
Q Consensus 191 LVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a 225 (261)
|+|++||||+|+++.||+.+|+..|+..+++++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHH
Confidence 68999999999999999999999999999999875
No 85
>PRK14528 adenylate kinase; Provisional
Probab=98.03 E-value=1.2e-05 Score=68.18 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=36.0
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a 225 (261)
.+|.+.|++||||||+++.||+.+||..+++++++.+..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~ 40 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAV 40 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHh
Confidence 479999999999999999999999999999999997643
No 86
>PRK04040 adenylate kinase; Provisional
Probab=98.03 E-value=8.2e-06 Score=70.04 Aligned_cols=40 Identities=13% Similarity=0.085 Sum_probs=35.3
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc--CCCccCcHHHHHHHh
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL--GYTPLSTKELLETFA 225 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L--gY~fvDTDeLIEq~a 225 (261)
.+.|+++|++|+||||+++.|++.| ||.+++.++++-..+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a 43 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVA 43 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHH
Confidence 3579999999999999999999999 999999999864443
No 87
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.02 E-value=4.5e-06 Score=71.68 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=36.6
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCC
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ 227 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agk 227 (261)
++|.++|.+||||||.|+.||+.+|++.+||+++.......
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~ 41 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAE 41 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhcc
Confidence 47999999999999999999999999999999988665433
No 88
>PRK06762 hypothetical protein; Provisional
Probab=98.01 E-value=6.1e-06 Score=66.94 Aligned_cols=40 Identities=23% Similarity=0.225 Sum_probs=34.2
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc--CCCccCcHHHHHHHh
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL--GYTPLSTKELLETFA 225 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L--gY~fvDTDeLIEq~a 225 (261)
++-|.|+|++||||||+++.|++++ |+.++|.|++-....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~ 43 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDML 43 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhc
Confidence 4558999999999999999999999 566789999876554
No 89
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.00 E-value=1.1e-05 Score=69.53 Aligned_cols=53 Identities=19% Similarity=0.193 Sum_probs=41.0
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh---CCCHHHHHHhhCchhH
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSWMLAEGSDSV 241 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a---gkSI~eIFaeeGE~~F 241 (261)
-|.|+|.+|||||||++.|+. +||.++|+|++.-+.. +..+.+|...-|+..+
T Consensus 3 ~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~ 58 (200)
T PRK14734 3 RIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDIL 58 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCcccc
Confidence 388999999999999999998 8999999998654443 2345666666666433
No 90
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.00 E-value=6.8e-06 Score=80.67 Aligned_cols=68 Identities=16% Similarity=0.214 Sum_probs=58.6
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCccCcH--HHHH-HHhCCCHHHHHHhhCchhHH----------------hhHH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK--ELLE-TFAKQTIDSWMLAEGSDSVV----------------NGEC 246 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTD--eLIE-q~agkSI~eIFaeeGE~~FR----------------elEs 246 (261)
+.+|.|+|++|+|||++++.||+.+|.+|+..| ++.| .+.|+...+++...++++|+ ++|.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ 129 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEE 129 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999998887 4777 58899999999999999984 4466
Q ss_pred HHHHHHh
Q 024881 247 DVLESLI 253 (261)
Q Consensus 247 ~VLeels 253 (261)
.++.+|.
T Consensus 130 ri~~~l~ 136 (443)
T PRK05201 130 RILDALL 136 (443)
T ss_pred HHHHHhC
Confidence 6666664
No 91
>PLN02459 probable adenylate kinase
Probab=97.97 E-value=6.8e-06 Score=75.46 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=41.9
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCc
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGS 238 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE 238 (261)
++|+|+|++|+||+|+++.||+.+|+.++++.++|.+. .|+-|.++. +.|+
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~-~~G~ 86 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIV-NQGK 86 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHH-HcCC
Confidence 68999999999999999999999999999999999664 334455553 4454
No 92
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.96 E-value=4.3e-06 Score=73.47 Aligned_cols=38 Identities=26% Similarity=0.304 Sum_probs=34.4
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF 224 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~ 224 (261)
..|.+.|++|+||||+++.||++||+.++|++.+.-.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~ 40 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI 40 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence 36999999999999999999999999999999886544
No 93
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=97.96 E-value=1e-05 Score=69.68 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=40.9
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCC---HHHHHHhhCchhH
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT---IDSWMLAEGSDSV 241 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkS---I~eIFaeeGE~~F 241 (261)
-|-|+|.+|||||||++.|++ +||+.+|+|++.-++...- ...|...=|++.|
T Consensus 2 iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il 57 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEIL 57 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGB
T ss_pred EEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCcccc
Confidence 378999999999999999999 9999999999998887532 2344444444443
No 94
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.95 E-value=3e-06 Score=64.19 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=30.1
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCc--cCcHHHH
Q 024881 189 IFLVGDSTEVNEKVALELAVGLGYTP--LSTKELL 221 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~LgY~f--vDTDeLI 221 (261)
|+|+|.+|+|||++++.||+.+|+++ +|..++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI 35 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccc
Confidence 68999999999999999999999887 6777777
No 95
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.94 E-value=3.5e-06 Score=63.64 Aligned_cols=22 Identities=32% Similarity=0.228 Sum_probs=21.5
Q ss_pred EEEEecCCCchhHHHHHHHHhc
Q 024881 189 IFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~L 210 (261)
|+|.|.+|+|||||++.|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999999
No 96
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=97.93 E-value=1.3e-05 Score=72.37 Aligned_cols=39 Identities=13% Similarity=0.022 Sum_probs=36.0
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhC
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK 226 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~ag 226 (261)
-|-|.|.+|||||||++.|++.+|++.+|+|++.-++..
T Consensus 3 iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~ 41 (244)
T PTZ00451 3 LIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQA 41 (244)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHc
Confidence 388999999999999999999999999999999887755
No 97
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.91 E-value=8.8e-06 Score=68.68 Aligned_cols=38 Identities=29% Similarity=0.346 Sum_probs=30.0
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCC
Q 024881 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ 227 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agk 227 (261)
|.+-|..|||+++||+.||++|||+++|- ++|++++++
T Consensus 2 ITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~ 39 (179)
T PF13189_consen 2 ITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKE 39 (179)
T ss_dssp EEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT--
T ss_pred EEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHH
Confidence 67889999999999999999999999999 888888877
No 98
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.86 E-value=9.5e-06 Score=68.72 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=34.8
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHH
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL 220 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeL 220 (261)
+.|..+.|+|.+|+||||+++.||..++..++|.|.+
T Consensus 1 ~~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~ 37 (176)
T PRK09825 1 MAGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDL 37 (176)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCccc
Confidence 4688899999999999999999999999999999986
No 99
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.85 E-value=1.4e-05 Score=70.32 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=34.2
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a 225 (261)
-|-|+|+.|||||||++.+++ +||+.+|.|+++-++.
T Consensus 4 iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~ 40 (201)
T COG0237 4 IIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVV 40 (201)
T ss_pred EEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHH
Confidence 488999999999999999999 9999999999988654
No 100
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.81 E-value=7.9e-06 Score=71.20 Aligned_cols=33 Identities=27% Similarity=0.319 Sum_probs=29.6
Q ss_pred ecCCCchhHHHHHHHHhcCCCccCcHHH-----HHHHh
Q 024881 193 GDSTEVNEKVALELAVGLGYTPLSTKEL-----LETFA 225 (261)
Q Consensus 193 GmmGsGKSTVGr~LA~~LgY~fvDTDeL-----IEq~a 225 (261)
|-.|+||||||+.||++||+.|+|.|+| |+++.
T Consensus 2 GVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~ 39 (161)
T COG3265 2 GVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMS 39 (161)
T ss_pred CCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHh
Confidence 7789999999999999999999999987 56553
No 101
>PLN02422 dephospho-CoA kinase
Probab=97.80 E-value=2.9e-05 Score=69.89 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=43.6
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCC---HHHHHHhhCchhH
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT---IDSWMLAEGSDSV 241 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkS---I~eIFaeeGE~~F 241 (261)
.|.|+|.+|||||||++.|+ .+|+.++|+|++..+..... ..+|.+.-|++.+
T Consensus 3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il 58 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDIL 58 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhc
Confidence 48999999999999999999 68999999999987775432 4566666666665
No 102
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.75 E-value=2.8e-05 Score=70.62 Aligned_cols=39 Identities=28% Similarity=0.275 Sum_probs=34.4
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a 225 (261)
..|-+=|+.|||||||++.||++|||.++||-.+--.+|
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a 43 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVA 43 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHH
Confidence 578999999999999999999999999999977655444
No 103
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.74 E-value=1.2e-05 Score=66.93 Aligned_cols=29 Identities=31% Similarity=0.158 Sum_probs=27.7
Q ss_pred EecCCCchhHHHHHHHHhcCCCccCcHHH
Q 024881 192 VGDSTEVNEKVALELAVGLGYTPLSTKEL 220 (261)
Q Consensus 192 VGmmGsGKSTVGr~LA~~LgY~fvDTDeL 220 (261)
+|.+|+||||+++.||.+||..++|.|.+
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~ 29 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFL 29 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccC
Confidence 59999999999999999999999999976
No 104
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.73 E-value=1.7e-05 Score=80.16 Aligned_cols=39 Identities=26% Similarity=0.262 Sum_probs=35.2
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a 225 (261)
..|.|.|.+|+|||||++.||++|||.|+||.++....+
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~ 40 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACA 40 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHH
Confidence 379999999999999999999999999999988776644
No 105
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.73 E-value=1.9e-05 Score=64.83 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=23.9
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCC
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGY 212 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY 212 (261)
|.-|.|+|+|||||||+++.||..++.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 456899999999999999999998863
No 106
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.69 E-value=6.1e-05 Score=62.91 Aligned_cols=53 Identities=23% Similarity=0.345 Sum_probs=40.4
Q ss_pred chhHHHHHHHhhcC-CceEEEEecCCCchhHHHHHHHHhcCCC-cc--CcHHHHHHH
Q 024881 172 SWESLTAGSMQLLK-GTSIFLVGDSTEVNEKVALELAVGLGYT-PL--STKELLETF 224 (261)
Q Consensus 172 ~We~l~~g~~~lLk-G~sIyLVGmmGsGKSTVGr~LA~~LgY~-fv--DTDeLIEq~ 224 (261)
....+.+-+.+.|+ |..|+|.|++|+||||+.|.+|+.||+. .+ -|-.++..+
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~~~v~SPTf~lv~~Y 63 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQGNVTSPTFTLVNEY 63 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCCcccCCCeeeeeec
Confidence 35667778888775 5679999999999999999999999975 33 233444444
No 107
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.68 E-value=2.7e-05 Score=65.93 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=34.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc-----CCCccCcHHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLETFA 225 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L-----gY~fvDTDeLIEq~a 225 (261)
+|.-|.|+|++|+||||+++.|+..| |..++|.|.+-....
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~ 68 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLC 68 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhh
Confidence 67789999999999999999999987 457889988765543
No 108
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.65 E-value=4.7e-05 Score=55.33 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=26.6
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCC
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYT 213 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~ 213 (261)
+|.++.|+|++|+||||+++.||..++..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 36789999999999999999999999876
No 109
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.64 E-value=4.7e-05 Score=67.35 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=37.7
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH---hCCCHHHH
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF---AKQTIDSW 232 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~---agkSI~eI 232 (261)
-|.+-|.+|||||||++.||+.|||+++.+-..--+. -|.++.|.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef 49 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEF 49 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHH
Confidence 5788999999999999999999999999977665444 46777764
No 110
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=97.64 E-value=7.8e-05 Score=64.32 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=33.9
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhC
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK 226 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~ag 226 (261)
-|-|+|.+||||||+++.|+. +|+..+|+|++.-++..
T Consensus 7 ~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~ 44 (208)
T PRK14731 7 LVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQV 44 (208)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcC
Confidence 377899999999999999996 99999999988777754
No 111
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.62 E-value=2.3e-05 Score=77.82 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=37.7
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a 225 (261)
+|..|.+.|.+||||||+++.||+.|||.++|++.+--..+
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a 323 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVT 323 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHH
Confidence 78889999999999999999999999999999998876653
No 112
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.62 E-value=8.2e-05 Score=66.29 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=37.3
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCCcc--------CcHHHHHHHhC
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPL--------STKELLETFAK 226 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv--------DTDeLIEq~ag 226 (261)
+..|.+|.|.|.+|+|||++++.||+.+|++++ ++.+++-+..+
T Consensus 18 l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~ 69 (262)
T TIGR02640 18 LKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAG 69 (262)
T ss_pred HhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcc
Confidence 446889999999999999999999999999988 56677766543
No 113
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.59 E-value=7.7e-05 Score=64.96 Aligned_cols=42 Identities=19% Similarity=0.043 Sum_probs=34.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCc-cCcHHHHHHHhC
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTP-LSTKELLETFAK 226 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~f-vDTDeLIEq~ag 226 (261)
+++-|++.|.+|+||||+++.||.++|+.. +.+|.+-|.+.+
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~ 44 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRP 44 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHH
Confidence 567799999999999999999999999975 666766555553
No 114
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.56 E-value=9.1e-05 Score=61.24 Aligned_cols=31 Identities=29% Similarity=0.258 Sum_probs=27.3
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc---CCCcc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPL 215 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L---gY~fv 215 (261)
+|+-|+|.|.+||||||+++.||+.| ||..+
T Consensus 2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~ 35 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVL 35 (195)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 58889999999999999999999999 54443
No 115
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=97.55 E-value=9.5e-05 Score=64.02 Aligned_cols=52 Identities=15% Similarity=0.145 Sum_probs=39.4
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCC---CHHHHHHhhCchhH
Q 024881 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ---TIDSWMLAEGSDSV 241 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agk---SI~eIFaeeGE~~F 241 (261)
|.|+|.+|||||||++.|+. +|+.++|.|++.-..... .+.+|...=|++.+
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~ 56 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSIL 56 (196)
T ss_pred EEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhc
Confidence 67999999999999999976 799999999998777542 23444444444444
No 116
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.51 E-value=2.2e-05 Score=63.47 Aligned_cols=30 Identities=27% Similarity=0.271 Sum_probs=26.9
Q ss_pred EEEEecCCCchhHHHHHHHHhc---CCCccCcH
Q 024881 189 IFLVGDSTEVNEKVALELAVGL---GYTPLSTK 218 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~L---gY~fvDTD 218 (261)
|+|.|.+||||||+++.||+.| ||..+.+.
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~ 35 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEARGYEVVLTR 35 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 8899999999999999999999 88776553
No 117
>PRK12338 hypothetical protein; Provisional
Probab=97.49 E-value=0.00011 Score=69.25 Aligned_cols=42 Identities=26% Similarity=0.156 Sum_probs=35.7
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCcc-CcHHHHHHHhC
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPL-STKELLETFAK 226 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv-DTDeLIEq~ag 226 (261)
+..-|.+.|.+|+||||+|+.||++||+..+ ++|.+-+.+.|
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~ 45 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRG 45 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcC
Confidence 4567888999999999999999999999988 77777776555
No 118
>PRK10646 ADP-binding protein; Provisional
Probab=97.48 E-value=0.00016 Score=61.89 Aligned_cols=42 Identities=24% Similarity=0.248 Sum_probs=36.5
Q ss_pred cchhHHHHHHHhhcCC-ceEEEEecCCCchhHHHHHHHHhcCC
Q 024881 171 ESWESLTAGSMQLLKG-TSIFLVGDSTEVNEKVALELAVGLGY 212 (261)
Q Consensus 171 e~We~l~~g~~~lLkG-~sIyLVGmmGsGKSTVGr~LA~~LgY 212 (261)
+....+.+-+.+.|++ .-|+|.|++|+||||..|.||++||.
T Consensus 12 ~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 12 QATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3467788888888885 45899999999999999999999995
No 119
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.47 E-value=0.00016 Score=60.48 Aligned_cols=27 Identities=22% Similarity=0.149 Sum_probs=25.4
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
+|.-|.|+|.+||||||+++.|+..+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 688999999999999999999999985
No 120
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.46 E-value=0.0001 Score=58.03 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=25.9
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCc
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTP 214 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~f 214 (261)
+|.|+|++|+|||++++.||+.+++++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~ 27 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPV 27 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcce
Confidence 589999999999999999999999988
No 121
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=97.44 E-value=0.00013 Score=76.59 Aligned_cols=42 Identities=26% Similarity=0.249 Sum_probs=38.6
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a 225 (261)
|+++.|.+-|++||||||+++.||++|||.++||+.+.-.+|
T Consensus 32 m~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a 73 (863)
T PRK12269 32 MGTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFT 73 (863)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHH
Confidence 456789999999999999999999999999999999987775
No 122
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.44 E-value=0.00023 Score=58.82 Aligned_cols=38 Identities=32% Similarity=0.330 Sum_probs=30.1
Q ss_pred HHHHHHhhcCCce-EEEEecCCCchhHHHHHHHHhcCCC
Q 024881 176 LTAGSMQLLKGTS-IFLVGDSTEVNEKVALELAVGLGYT 213 (261)
Q Consensus 176 l~~g~~~lLkG~s-IyLVGmmGsGKSTVGr~LA~~LgY~ 213 (261)
+.+-+.+.|++-. |+|-|++|+||||..|.+|+.||..
T Consensus 4 la~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 4 LAKKLAQILKPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp HHHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 4556666776654 9999999999999999999999975
No 123
>PRK08356 hypothetical protein; Provisional
Probab=97.40 E-value=0.0001 Score=62.29 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=28.5
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL 220 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeL 220 (261)
+.|.|+|++||||||+++.|++ +|+..+.+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~ 38 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDP 38 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCc
Confidence 4689999999999999999964 89988887653
No 124
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.39 E-value=0.0001 Score=63.08 Aligned_cols=40 Identities=30% Similarity=0.303 Sum_probs=33.2
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc---CC--CccCcHHHHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL---GY--TPLSTKELLETF 224 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L---gY--~fvDTDeLIEq~ 224 (261)
||.-|.|+|.+||||||+|+.|+++| |+ -++|.|++-..+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l 45 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGL 45 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhcc
Confidence 67889999999999999999999998 44 478999886543
No 125
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=97.34 E-value=0.0019 Score=49.64 Aligned_cols=83 Identities=19% Similarity=0.270 Sum_probs=61.9
Q ss_pred eEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEe--cCeEEEEEE
Q 024881 81 YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYID--EDQLVINLK 158 (261)
Q Consensus 81 Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~Id--D~~lvv~L~ 158 (261)
|.|-|+.++|-|.|=.+.. +....++.|+.+.++|.|.+.=.+.- -.++ -+||++|.++. .=.+- -.-|-|.|+
T Consensus 1 ~DWyQt~~~Vtitiy~K~~-~~~~~~v~v~~~~~~l~v~~~~~~~~-~~~~-~~L~~~I~~~~-~~~~~~~~~KVEI~L~ 76 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSK-GNPADIVIVDDQQRELRVEIILGDKS-YLLH-LDLSNEVQWPC-EVRISTETGKIELVLK 76 (87)
T ss_pred CCceECCCEEEEEEEEccc-CCCCccEEEECCCCEEEEEEECCCce-EEEe-eeccccCCCCc-EEEEcccCceEEEEEE
Confidence 7899999999998876653 35677888999999999987522221 2466 58999997553 33333 368999999
Q ss_pred ecCCCCCCcc
Q 024881 159 KQDPELKWPD 168 (261)
Q Consensus 159 K~d~~m~Wp~ 168 (261)
|.++ ++|+.
T Consensus 77 K~e~-~~W~~ 85 (87)
T cd06490 77 KKEP-EKWTS 85 (87)
T ss_pred cCCC-Ccccc
Confidence 9998 88953
No 126
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.31 E-value=0.00017 Score=52.50 Aligned_cols=29 Identities=28% Similarity=0.213 Sum_probs=24.9
Q ss_pred EEEEecCCCchhHHHHHHHHh---cCCCccCc
Q 024881 189 IFLVGDSTEVNEKVALELAVG---LGYTPLST 217 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~---LgY~fvDT 217 (261)
|.+.|.+|+||||+++.|++. .++.++|.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence 789999999999999999999 55556655
No 127
>COG0645 Predicted kinase [General function prediction only]
Probab=97.29 E-value=0.0003 Score=61.81 Aligned_cols=63 Identities=14% Similarity=0.092 Sum_probs=50.0
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHh
Q 024881 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLI 253 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels 253 (261)
+.++|.||+|||||++.||+.||+.-|-+|+.-...-| ++++=...-+.+-++.+..|-.++-
T Consensus 4 ~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g--~p~~~r~~~g~ys~~~~~~vy~~l~ 66 (170)
T COG0645 4 VLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFG--VPEETRGPAGLYSPAATAAVYDELL 66 (170)
T ss_pred EEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcC--CcccccCCCCCCcHHHHHHHHHHHH
Confidence 67899999999999999999999999999999988888 5555444444566666666655543
No 128
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.25 E-value=0.00042 Score=51.26 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=27.7
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc---CCCccCc
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL---GYTPLST 217 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L---gY~fvDT 217 (261)
+.+++++|.+|+|||++++.++..+ ++.++..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 53 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYL 53 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence 5789999999999999999999998 6665544
No 129
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.23 E-value=0.00038 Score=66.02 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=33.8
Q ss_pred hhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881 173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPL 215 (261)
Q Consensus 173 We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv 215 (261)
+..+.+|+ +.+.+|+|.|.+|+||||+++.||++||++++
T Consensus 54 ~~~vl~~l---~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 54 TKAICAGF---AYDRRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred HHHHHHHH---hcCCcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 33455554 45889999999999999999999999999997
No 130
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.22 E-value=0.00046 Score=68.90 Aligned_cols=34 Identities=15% Similarity=0.205 Sum_probs=32.1
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL 220 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeL 220 (261)
.=|.++|.+||||||.++.+++.+||..++.|++
T Consensus 370 ~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~l 403 (526)
T TIGR01663 370 EMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTL 403 (526)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHH
Confidence 3499999999999999999999999999999987
No 131
>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]
Probab=97.22 E-value=0.0005 Score=68.76 Aligned_cols=84 Identities=21% Similarity=0.429 Sum_probs=75.5
Q ss_pred CceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEec-CeEEEEE
Q 024881 79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDE-DQLVINL 157 (261)
Q Consensus 79 ~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD-~~lvv~L 157 (261)
+-|-|+|+-.++.+|+.+|. ..+.++++|..-.+++-|..+-- -+ |+ |+||..|--+-|-|-|.+ +-|-++|
T Consensus 290 p~y~w~qt~d~~~~~~~~p~--~~~~~~i~Iq~~~~~v~v~~~dh-~~---~~-g~lyasv~he~s~~ii~ean~Le~sl 362 (596)
T KOG4379|consen 290 PSYSWSQTDDNVLIRFNVPS--TASAKEINIQGSKTTVVVKHLDH-VI---FD-GELYASVGHELSAFIIAEANGLELSL 362 (596)
T ss_pred ccceeeeccCcceEEEeccc--ccccceEEEEecCceEEEEeeee-EE---ec-cchhhhccccchhhhhhhhccceEEE
Confidence 46999999999999999999 68999999999999999987765 35 78 999999999999999999 9999999
Q ss_pred EecCCCCCCccc
Q 024881 158 KKQDPELKWPDI 169 (261)
Q Consensus 158 ~K~d~~m~Wp~~ 169 (261)
.|.|....||.+
T Consensus 363 ~K~de~~twprL 374 (596)
T KOG4379|consen 363 TKADEIQTWPRL 374 (596)
T ss_pred eecccccccchh
Confidence 999887888543
No 132
>PRK08233 hypothetical protein; Provisional
Probab=97.20 E-value=0.00032 Score=56.79 Aligned_cols=28 Identities=18% Similarity=0.044 Sum_probs=25.1
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCC
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGY 212 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY 212 (261)
++.-|.+.|.+||||||+++.||+.|+-
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~ 29 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKN 29 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 4667899999999999999999999973
No 133
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.19 E-value=0.00034 Score=57.16 Aligned_cols=26 Identities=19% Similarity=0.083 Sum_probs=23.5
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcC
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
|.-|.|+|++|+||||+++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 56799999999999999999999763
No 134
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=97.18 E-value=0.0012 Score=59.14 Aligned_cols=83 Identities=12% Similarity=0.286 Sum_probs=69.4
Q ss_pred CceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEEEE
Q 024881 79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK 158 (261)
Q Consensus 79 ~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~ 158 (261)
-+|.|-|+..+|-+.|=.+. ..-.||+|.|..+.|.+-++-.+.=.-.+. .+||.+|.|+.|.--+--..|-|.|.
T Consensus 4 ~r~DwyQt~~~vvIti~~k~---v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~-~~L~~~I~pe~~s~k~~stKVEI~L~ 79 (196)
T KOG1309|consen 4 IRHDWYQTETSVVITIFAKN---VPKEDVNVEISENTLSIVIQLPSGSEYNLQ-LKLYHEIIPEKSSFKVFSTKVEITLA 79 (196)
T ss_pred ccceeecCCceEEEEEEecC---CCccceeEEeecceEEEEEecCCchhhhhh-HHhcccccccceeeEeeeeeEEEEec
Confidence 48999999999999987777 457899999999999998877543222345 78999999999997777789999999
Q ss_pred ecCCCCCC
Q 024881 159 KQDPELKW 166 (261)
Q Consensus 159 K~d~~m~W 166 (261)
|.+. .+|
T Consensus 80 K~~~-irW 86 (196)
T KOG1309|consen 80 KAEI-IRW 86 (196)
T ss_pred cccc-hhh
Confidence 9888 777
No 135
>PHA00729 NTP-binding motif containing protein
Probab=97.14 E-value=0.00034 Score=63.27 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=34.8
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcC------------------CCccCcHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLG------------------YTPLSTKELLETFA 225 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~Lg------------------Y~fvDTDeLIEq~a 225 (261)
.||+|.|.+|+|||++|..||.++| ..|+|.++++++..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~ 74 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQ 74 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHH
Confidence 4899999999999999999999985 36899999988875
No 136
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.14 E-value=0.00041 Score=56.90 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=31.5
Q ss_pred EEEEecCCCchhHHHHHHHHhc---CC--CccCcHHHHHHHh
Q 024881 189 IFLVGDSTEVNEKVALELAVGL---GY--TPLSTKELLETFA 225 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~L---gY--~fvDTDeLIEq~a 225 (261)
|+++|.+||||||+++.||..+ |+ ..+|.|.+-+.+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~ 43 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLN 43 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhh
Confidence 7899999999999999999999 64 4679898776544
No 137
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.07 E-value=0.0025 Score=63.67 Aligned_cols=99 Identities=13% Similarity=0.134 Sum_probs=56.2
Q ss_pred eeCCEEEEEEccCCcceeeeeccccc-CCCCCCceeeEEecC------------eEEEEEEecCCCCCCcccccchhHHH
Q 024881 111 ADGTCLTVRVNRSGSFITLIETNQLF-DKIKPTETIWYIDED------------QLVINLKKQDPELKWPDIVESWESLT 177 (261)
Q Consensus 111 ~~~~sL~V~vk~~~~~~tlId~g~L~-~kIk~~Et~W~IdD~------------~lvv~L~K~d~~m~Wp~~~e~We~l~ 177 (261)
++++++.|...+.+....-+. +.+- +.+++.++.+ ++.+ .--+-+++.. +..|-||. ..+...
T Consensus 116 ~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~p-~v~~~dIg-Gl~~~i 191 (512)
T TIGR03689 116 LGDGRALVVDHSGEERVVKLA-GALADELIRAGDSLL-VDPKAGYAFEAVPKAEVEDLVLEEVP-DVTYADIG-GLDSQI 191 (512)
T ss_pred eCCCeEEEEeCCCCeEEeehh-hhhCHhhCCCCCEEE-EcccchhhhhcCCHhHHhcceeecCC-CCCHHHcC-ChHHHH
Confidence 345566665555543322222 3333 3467777775 3320 0111234443 48888865 122333
Q ss_pred HHHHhhc----------------CCceEEEEecCCCchhHHHHHHHHhcCCC
Q 024881 178 AGSMQLL----------------KGTSIFLVGDSTEVNEKVALELAVGLGYT 213 (261)
Q Consensus 178 ~g~~~lL----------------kG~sIyLVGmmGsGKSTVGr~LA~~LgY~ 213 (261)
.-+.+.+ ....|.|.|++|+|||++++.+|..|+..
T Consensus 192 ~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 192 EQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred HHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 3332221 23569999999999999999999999765
No 138
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.05 E-value=0.00054 Score=62.23 Aligned_cols=44 Identities=23% Similarity=0.383 Sum_probs=35.5
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc---CC------CccCcHHHHHHHhCCC
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL---GY------TPLSTKELLETFAKQT 228 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L---gY------~fvDTDeLIEq~agkS 228 (261)
.|.+|.|.|.+|+|||++|+.+|+.+ || .+++.++++.++.|.+
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~ 109 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHT 109 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccc
Confidence 35689999999999999999988876 33 3567788888777765
No 139
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.04 E-value=0.00063 Score=55.34 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=20.6
Q ss_pred EEEEecCCCchhHHHHHHHHhc
Q 024881 189 IFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~L 210 (261)
|+|+|++|+||||+.+.|++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999999974
No 140
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.02 E-value=0.0006 Score=60.21 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=36.0
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET 223 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq 223 (261)
.+.||.+.|-+|+||||+|..||+.+||.+++--++++.
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkE 44 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKE 44 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhh
Confidence 467999999999999999999999999999999888865
No 141
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.02 E-value=0.00032 Score=59.36 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=32.0
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcC---CCccCcHHHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLG---YTPLSTKELLET 223 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg---Y~fvDTDeLIEq 223 (261)
++.-|.|+|.+||||||+++.|++.|+ ..+++.|.....
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~ 46 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKD 46 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccC
Confidence 567799999999999999999999993 345777776543
No 142
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.99 E-value=0.00073 Score=56.14 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=33.9
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc---C--CCccCcHHHHHHH
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKELLETF 224 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L---g--Y~fvDTDeLIEq~ 224 (261)
=+|.-|.++|.+|+||||+++.|+..| | ..++|.|.+-+.+
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l 61 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGL 61 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhh
Confidence 357789999999999999999999998 4 4578998866543
No 143
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.98 E-value=0.00091 Score=57.17 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=51.1
Q ss_pred eEEEEEEecCCCCCCcccc-cchhHHHHHHHhhcC----CceEEEEecCCCchhHHHHHHHHhc-----CCCccCcHHHH
Q 024881 152 QLVINLKKQDPELKWPDIV-ESWESLTAGSMQLLK----GTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELL 221 (261)
Q Consensus 152 ~lvv~L~K~d~~m~Wp~~~-e~We~l~~g~~~lLk----G~sIyLVGmmGsGKSTVGr~LA~~L-----gY~fvDTDeLI 221 (261)
||.+.|....+ ..+.+.+ .+.+-+.+.+.+... +.+++|.|..|+|||++++.+|..+ ...++|..++.
T Consensus 4 ql~~~~~~~~~-~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 4 QLTLDLGPPPP-PTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL 82 (227)
T ss_pred ccccCCCCCCh-hhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence 55555555555 5555533 334456666666644 3479999999999999999999987 77888988876
Q ss_pred HH
Q 024881 222 ET 223 (261)
Q Consensus 222 Eq 223 (261)
+.
T Consensus 83 ~~ 84 (227)
T PRK08903 83 LA 84 (227)
T ss_pred HH
Confidence 65
No 144
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.97 E-value=0.0012 Score=62.14 Aligned_cols=41 Identities=27% Similarity=0.332 Sum_probs=35.7
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCC-ccCcHHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYT-PLSTKELLETFA 225 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~-fvDTDeLIEq~a 225 (261)
+...|.+.|.+|+||||+++.||.+||+. .+.+|.+-|.+-
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R 132 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMR 132 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHH
Confidence 45679999999999999999999999998 688888776554
No 145
>CHL00181 cbbX CbbX; Provisional
Probab=96.96 E-value=0.00071 Score=61.87 Aligned_cols=44 Identities=25% Similarity=0.412 Sum_probs=36.6
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc---CC------CccCcHHHHHHHhCCC
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL---GY------TPLSTKELLETFAKQT 228 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L---gY------~fvDTDeLIEq~agkS 228 (261)
.|.+|.|.|.+|+|||++|+.+|+.+ || ..++.++++.++.|.+
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~ 110 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHT 110 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccc
Confidence 47789999999999999999999865 55 4567788888887765
No 146
>PRK06761 hypothetical protein; Provisional
Probab=96.95 E-value=0.00039 Score=64.44 Aligned_cols=37 Identities=19% Similarity=0.037 Sum_probs=30.6
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLE 222 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIE 222 (261)
+.-|.+.|++|+||||+++.|++.|+...++.+...+
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~ 39 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLE 39 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEec
Confidence 4559999999999999999999999976666555444
No 147
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.95 E-value=0.00082 Score=59.66 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=33.8
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF 224 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~ 224 (261)
+.|.+.|-+|.||||+++.|+ .|||..+..-+++.+.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~ 37 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKEN 37 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhc
Confidence 479999999999999999999 9999999998888763
No 148
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.94 E-value=0.0062 Score=59.61 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=34.9
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccC--cHHHHHHHhCCC
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLETFAKQT 228 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD--TDeLIEq~agkS 228 (261)
.+..+.|.|++|+|||++++.+|..++..|+. ..+++.++.|.+
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~ 261 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDG 261 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchH
Confidence 45679999999999999999999999988864 345655555543
No 149
>PLN02842 nucleotide kinase
Probab=96.92 E-value=0.001 Score=66.49 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=39.8
Q ss_pred EEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCch
Q 024881 191 LVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSD 239 (261)
Q Consensus 191 LVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~ 239 (261)
++|.+||||||+++.||+.+|+.+++++++|.+. .|+-|.+++ ..|+.
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l-~~G~l 55 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFM-NSGRL 55 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHH-hCCCC
Confidence 7899999999999999999999999999999643 455577775 45653
No 150
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.92 E-value=0.0012 Score=56.85 Aligned_cols=36 Identities=28% Similarity=0.391 Sum_probs=32.2
Q ss_pred HHHHHHhhc-CCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 176 LTAGSMQLL-KGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 176 l~~g~~~lL-kG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
+.+-+.+.| .|.-|+|-|+.|+||||..|.+|++||
T Consensus 14 lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 14 LGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred HHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcC
Confidence 456677777 777899999999999999999999999
No 151
>PRK00698 tmk thymidylate kinase; Validated
Probab=96.87 E-value=0.00087 Score=55.40 Aligned_cols=26 Identities=19% Similarity=0.028 Sum_probs=24.6
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+|+=|.+.|.+||||||+++.||+.|
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 68889999999999999999999987
No 152
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.86 E-value=0.0012 Score=58.34 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=23.5
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.+.|+.|.|++|+||||+++.+|+.|
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999875
No 153
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.86 E-value=0.00046 Score=68.88 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=34.7
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc-----CCCccCcHHHHHHHh
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLETFA 225 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L-----gY~fvDTDeLIEq~a 225 (261)
|.-|++.|.+||||||+|+.||++| ++.++|.|++=..+.
T Consensus 460 ~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~ 504 (632)
T PRK05506 460 PATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLN 504 (632)
T ss_pred cEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccC
Confidence 7779999999999999999999997 568899999865443
No 154
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=96.85 E-value=0.00097 Score=55.39 Aligned_cols=30 Identities=30% Similarity=0.385 Sum_probs=26.7
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCccCcH
Q 024881 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTD 218 (261)
|.+.|.+|+||||+.+.|++.+|+.++.-+
T Consensus 2 I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep 31 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHLGYEVVPEP 31 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcccccc
Confidence 789999999999999999999999776444
No 155
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0011 Score=69.21 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=34.0
Q ss_pred HHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881 179 GSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPL 215 (261)
Q Consensus 179 g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv 215 (261)
-..+.+||.-++|||++|.|||++|+-+|++||..||
T Consensus 343 ~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv 379 (782)
T COG0466 343 KLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV 379 (782)
T ss_pred HHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEE
Confidence 3457889999999999999999999999999999997
No 156
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.77 E-value=0.0012 Score=61.27 Aligned_cols=45 Identities=11% Similarity=0.234 Sum_probs=38.0
Q ss_pred cchhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881 171 ESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (261)
Q Consensus 171 e~We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD 216 (261)
.-|+.+..-+..-+ +..|.|+|.+|+||||+++.||..+|++++-
T Consensus 148 ~~w~~i~~~~~~~~-~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 148 QHWKHIPREVRPFF-VKTVAILGGESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred HHHHhCCHHHHhhc-CcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence 34777777777666 4579999999999999999999999999864
No 157
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.72 E-value=0.0015 Score=57.94 Aligned_cols=62 Identities=15% Similarity=0.224 Sum_probs=44.6
Q ss_pred EecCCCCCCcccccchhHHHHHHHhhcCC-c--eEEEEecCCCchhHHHHHHHHhcC-------CCccCcHHHH
Q 024881 158 KKQDPELKWPDIVESWESLTAGSMQLLKG-T--SIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKELL 221 (261)
Q Consensus 158 ~K~d~~m~Wp~~~e~We~l~~g~~~lLkG-~--sIyLVGmmGsGKSTVGr~LA~~Lg-------Y~fvDTDeLI 221 (261)
+|.-| +.+.+++- -+.+.+.+.+.++. . +++|.|++|+|||++++.+|+.+. +.+++..++.
T Consensus 7 ~ky~P-~~~~~~~g-~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~ 78 (337)
T PRK12402 7 EKYRP-ALLEDILG-QDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF 78 (337)
T ss_pred HhhCC-CcHHHhcC-CHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence 45666 66666663 55566667665554 3 699999999999999999999883 3456665543
No 158
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.72 E-value=0.0011 Score=56.43 Aligned_cols=37 Identities=27% Similarity=0.249 Sum_probs=30.3
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcC---CCccCcHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLG---YTPLSTKELL 221 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg---Y~fvDTDeLI 221 (261)
+|.-|.++|.+||||||+++.|+..|+ -.++..|...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~ 44 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYY 44 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccc
Confidence 577899999999999999999999886 3456666543
No 159
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.71 E-value=0.00094 Score=56.69 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=29.5
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc---CCCccCcHHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPLSTKELLE 222 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L---gY~fvDTDeLIE 222 (261)
+.+=+++.|.+||||||+...+...+ |+..+|+|++-+
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ 54 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence 34458889999999999999999987 899999999743
No 160
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.65 E-value=0.0012 Score=57.55 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=30.8
Q ss_pred EEEEecCCCchhHHHHHHHHhc-CCCccCcHHHHHH
Q 024881 189 IFLVGDSTEVNEKVALELAVGL-GYTPLSTKELLET 223 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~L-gY~fvDTDeLIEq 223 (261)
|.+.|.+||||||+++.|++.+ +...++.|+..-.
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~ 37 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP 37 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence 6788999999999999999999 7889988877543
No 161
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=96.63 E-value=0.0054 Score=55.60 Aligned_cols=83 Identities=18% Similarity=0.404 Sum_probs=70.2
Q ss_pred CCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEcc-CC-cceeeeecccccCCCCCCceeeEEecCeEEE
Q 024881 78 TSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNR-SG-SFITLIETNQLFDKIKPTETIWYIDEDQLVI 155 (261)
Q Consensus 78 t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~-~~-~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv 155 (261)
.+.|-|.|+..-|-+||.|.+. -..+|.|.++..||.+.|+. || ..+ ++ ++.|-..|.++.|.=-+.-|+++|
T Consensus 74 vt~ygWDQs~kfVK~yItL~GV---~eenVqv~ftp~Sldl~v~dlqGK~y~-~~-vnnLlk~I~vEks~~kvKtd~v~I 148 (224)
T KOG3260|consen 74 VTLYGWDQSNKFVKMYITLEGV---DEENVQVEFTPMSLDLKVHDLQGKNYR-MI-VNNLLKPISVEKSSKKVKTDTVLI 148 (224)
T ss_pred hhhcCccccCCeeEEEEEeecc---cccceeEEecccceeeeeeecCCccee-ee-hhhhccccChhhcccccccceEEE
Confidence 3579999999999999999984 38899999999999999853 22 222 23 489999999999998899999999
Q ss_pred EEEecCCCCCC
Q 024881 156 NLKKQDPELKW 166 (261)
Q Consensus 156 ~L~K~d~~m~W 166 (261)
.++|++. -+|
T Consensus 149 ~~kkVe~-~rw 158 (224)
T KOG3260|consen 149 LCKKVEN-TRW 158 (224)
T ss_pred eehhhhc-ccc
Confidence 9999998 666
No 162
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.63 E-value=0.0015 Score=61.01 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=31.2
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCccCcHHH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL 220 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeL 220 (261)
+.-|+++|++|+|||+++..||+.+|..+++.|.+
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 34599999999999999999999999988888774
No 163
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.58 E-value=0.0018 Score=62.56 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=30.7
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDe 219 (261)
...+|.|+|++|+|||++++.||+.++.+|+..|.
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~ 141 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQTLARILDVPFAIADA 141 (412)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCceecch
Confidence 34689999999999999999999999999985543
No 164
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.57 E-value=0.0025 Score=63.42 Aligned_cols=43 Identities=26% Similarity=0.230 Sum_probs=36.1
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCC-ccCcHHHHHHHhCC
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYT-PLSTKELLETFAKQ 227 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~-fvDTDeLIEq~agk 227 (261)
+..-|.++|.+|+||||++..||.+||+. ++.+|.+-+.+.+-
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~ 297 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAM 297 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhh
Confidence 35668999999999999999999999998 67888876655543
No 165
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.56 E-value=0.0036 Score=60.63 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=33.2
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCc--HHHHHHHhCC
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQ 227 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT--DeLIEq~agk 227 (261)
.+++|.|++|+|||++++.||..+|.+|+.. .++++...|.
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~ 131 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGV 131 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcc
Confidence 3699999999999999999999999888654 4555555443
No 166
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.56 E-value=0.0029 Score=57.86 Aligned_cols=40 Identities=25% Similarity=0.308 Sum_probs=35.3
Q ss_pred HHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881 176 LTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPL 215 (261)
Q Consensus 176 l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv 215 (261)
+..-...++.|.++.|.|.+|.|||++++.+|+.+|..|+
T Consensus 33 ~~~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 33 IELALLALLAGGHVLLEGPPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred HHHHHHHHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 4445567889999999999999999999999999998875
No 167
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0038 Score=64.81 Aligned_cols=68 Identities=18% Similarity=0.194 Sum_probs=57.4
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCcc--CcHHHHHHHhCCC---HHHHHHhh-------------------CchhHHh
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPL--STKELLETFAKQT---IDSWMLAE-------------------GSDSVVN 243 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fv--DTDeLIEq~agkS---I~eIFaee-------------------GE~~FRe 243 (261)
-|.|-|++|+|||.+|+.+|..||.+|+ ...++|-.+.|-| |.|.|.+- -|.+=||
T Consensus 225 GvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqre 304 (802)
T KOG0733|consen 225 GVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQRE 304 (802)
T ss_pred ceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHH
Confidence 3889999999999999999999999996 5788998888865 77777642 3567899
Q ss_pred hHHHHHHHHhcc
Q 024881 244 GECDVLESLIMF 255 (261)
Q Consensus 244 lEs~VLeels~~ 255 (261)
+|.++.+||...
T Consensus 305 MErRiVaQLlt~ 316 (802)
T KOG0733|consen 305 MERRIVAQLLTS 316 (802)
T ss_pred HHHHHHHHHHHh
Confidence 999999999854
No 168
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.53 E-value=0.0026 Score=60.27 Aligned_cols=40 Identities=20% Similarity=0.211 Sum_probs=33.0
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCcc--CcHHHHHHHhC
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPL--STKELLETFAK 226 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fv--DTDeLIEq~ag 226 (261)
.+|.|.|++|+|||++++.+|..+|..|+ +..++..+..|
T Consensus 166 ~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g 207 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIG 207 (389)
T ss_pred CceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhcc
Confidence 46999999999999999999999998875 45566655554
No 169
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.52 E-value=0.0044 Score=53.45 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=22.5
Q ss_pred eEEEEecCCCchhHHHHHHHHhcC
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
.+.|+|++|+||||+++.++..+.
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Confidence 588999999999999999999986
No 170
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.51 E-value=0.0029 Score=64.17 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=39.6
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCccC--cHHHHHHHhCCC---HHHHHH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLETFAKQT---IDSWML 234 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD--TDeLIEq~agkS---I~eIFa 234 (261)
...|.|.|++|+|||++++.||..+|..|+. ..+++.++.|.+ |.++|.
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~ 540 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFR 540 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHH
Confidence 3458999999999999999999999998875 467888777765 555554
No 171
>PRK06696 uridine kinase; Validated
Probab=96.49 E-value=0.0076 Score=52.18 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=26.5
Q ss_pred eEEEEecCCCchhHHHHHHHHhc---CCCcc--CcHHHH
Q 024881 188 SIFLVGDSTEVNEKVALELAVGL---GYTPL--STKELL 221 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~L---gY~fv--DTDeLI 221 (261)
-|-+.|.+||||||+++.||+.| |...+ ..|++.
T Consensus 24 iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 24 RVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 47888999999999999999999 65443 345443
No 172
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.48 E-value=0.0022 Score=53.94 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=30.4
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcC-----CCccCcHHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLE 222 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg-----Y~fvDTDeLIE 222 (261)
.+.+|+|+|..|+|||++++.+|..+. +.++|.+++.+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~ 79 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ 79 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH
Confidence 456899999999999999999998874 34677766643
No 173
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.47 E-value=0.0023 Score=65.33 Aligned_cols=70 Identities=23% Similarity=0.293 Sum_probs=55.9
Q ss_pred ccccCCCCCCceeeEEecCeEEEEEEecCCCCCCcccccchhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCC
Q 024881 133 NQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGY 212 (261)
Q Consensus 133 g~L~~kIk~~Et~W~IdD~~lvv~L~K~d~~m~Wp~~~e~We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY 212 (261)
..+|+|-||.-. ++|.|+=+|++-=-. |=-.++-....|++.=++|.|+.|+||||+-++||+.|||
T Consensus 70 elW~eKy~P~t~------eeLAVHkkKI~eVk~-------WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~ 136 (634)
T KOG1970|consen 70 ELWVEKYKPRTL------EELAVHKKKISEVKQ-------WLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGY 136 (634)
T ss_pred chhHHhcCcccH------HHHhhhHHhHHHHHH-------HHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCc
Confidence 345666666421 678888899887333 5447788889999999999999999999999999999999
Q ss_pred Ccc
Q 024881 213 TPL 215 (261)
Q Consensus 213 ~fv 215 (261)
...
T Consensus 137 ~~~ 139 (634)
T KOG1970|consen 137 QLI 139 (634)
T ss_pred eee
Confidence 754
No 174
>PHA02244 ATPase-like protein
Probab=96.45 E-value=0.0019 Score=62.77 Aligned_cols=70 Identities=17% Similarity=0.229 Sum_probs=48.5
Q ss_pred EEEEEEecCCCCCCcccccc----------hhHHHHHHHhhc-CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHH
Q 024881 153 LVINLKKQDPELKWPDIVES----------WESLTAGSMQLL-KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL 221 (261)
Q Consensus 153 lvv~L~K~d~~m~Wp~~~e~----------We~l~~g~~~lL-kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLI 221 (261)
|-|.+++|+.--.|.|+..- +.-+..-+.+.+ .|.+|+|+|.+|+|||++++.||..+|++|+....+.
T Consensus 75 ~~~~~~~~~~~~~~~~l~~~d~~~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~ 154 (383)
T PHA02244 75 LPVKIELQQEGKPAGDISGIDTTKIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIM 154 (383)
T ss_pred CchHHHHhhccCCcCchhhCCCcccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecCh
Confidence 44555555554555554433 444444444333 4778999999999999999999999999998766544
Q ss_pred H
Q 024881 222 E 222 (261)
Q Consensus 222 E 222 (261)
+
T Consensus 155 d 155 (383)
T PHA02244 155 D 155 (383)
T ss_pred H
Confidence 3
No 175
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.45 E-value=0.0035 Score=53.52 Aligned_cols=42 Identities=21% Similarity=0.443 Sum_probs=34.2
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc---CC--CccCcHHHHHHHhC
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL---GY--TPLSTKELLETFAK 226 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L---gY--~fvDTDeLIEq~ag 226 (261)
+|.|++|.|.+|+|||.++..+|..+ || .|+++++|+++...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~ 92 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQ 92 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHC
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccc
Confidence 68899999999999999999998654 65 58999999999864
No 176
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.45 E-value=0.0024 Score=59.28 Aligned_cols=49 Identities=18% Similarity=0.045 Sum_probs=37.2
Q ss_pred eEEEEEEecCCCCCCcccccchhHHHHHHH-hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 152 QLVINLKKQDPELKWPDIVESWESLTAGSM-QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 152 ~lvv~L~K~d~~m~Wp~~~e~We~l~~g~~-~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
-|.++.++... |-.+..++. +.-+|..+-|||.+||||||++|.||-..
T Consensus 8 nl~~~y~~~~~----------~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 8 NLSIVYGGGKF----------AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred ceEEEecCCcc----------hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 35566666665 444555555 67789999999999999999999999644
No 177
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.45 E-value=0.0032 Score=52.53 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=24.3
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
+|+-|+|+|++|+||+|+.+.|.+.+.
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 578899999999999999999998764
No 178
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.45 E-value=0.0021 Score=52.36 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=22.2
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPL 215 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fv 215 (261)
.|.|+|-.|+||||+.+.||+. ||+++
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 4899999999999999999999 99988
No 179
>PRK09183 transposase/IS protein; Provisional
Probab=96.45 E-value=0.003 Score=56.79 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=32.7
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHh---cCC--CccCcHHHHHHH
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVG---LGY--TPLSTKELLETF 224 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~---LgY--~fvDTDeLIEq~ 224 (261)
-+|.+++|+|++|+|||+++..||.. -|| .|++..++++..
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l 145 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQL 145 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHH
Confidence 45889999999999999999999755 366 466777777553
No 180
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.45 E-value=0.0021 Score=59.53 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=27.8
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTD 218 (261)
.-|.|.|++||||||+++.|+ .+||.++|..
T Consensus 7 ~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~~ 37 (288)
T PRK05416 7 RLVIVTGLSGAGKSVALRALE-DLGYYCVDNL 37 (288)
T ss_pred eEEEEECCCCCcHHHHHHHHH-HcCCeEECCc
Confidence 359999999999999999997 6799999975
No 181
>PRK13973 thymidylate kinase; Provisional
Probab=96.44 E-value=0.00099 Score=57.50 Aligned_cols=34 Identities=29% Similarity=0.324 Sum_probs=31.1
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc---CCCccCc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL---GYTPLST 217 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L---gY~fvDT 217 (261)
|+|+=|.|-|.-||||||.++.||+.| ||..+-+
T Consensus 1 m~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 1 MRGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 367789999999999999999999999 9998866
No 182
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.44 E-value=0.0022 Score=51.37 Aligned_cols=40 Identities=20% Similarity=0.080 Sum_probs=24.1
Q ss_pred hhHHHHHH--HhhcCCceEEEEecCCCchhHHHHHHHHhcCC
Q 024881 173 WESLTAGS--MQLLKGTSIFLVGDSTEVNEKVALELAVGLGY 212 (261)
Q Consensus 173 We~l~~g~--~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY 212 (261)
|+.+..-+ ..--.+.+++|+|..|+|||++.+.++..+.-
T Consensus 9 ~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 9 IERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp HHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44444444 33345667999999999999999988776643
No 183
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.44 E-value=0.0026 Score=53.67 Aligned_cols=23 Identities=30% Similarity=0.200 Sum_probs=21.9
Q ss_pred EEEEecCCCchhHHHHHHHHhcC
Q 024881 189 IFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
|-+.|.+||||||+++.|+..|+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999999997
No 184
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.39 E-value=0.0045 Score=57.40 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=33.0
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCcc--CcHHHHHHHhCC
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPL--STKELLETFAKQ 227 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fv--DTDeLIEq~agk 227 (261)
+..|.|+|++|+|||++++.+|..++..|+ +..++..+..|.
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~ 199 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGE 199 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhH
Confidence 456999999999999999999999998875 344555554443
No 185
>PRK08181 transposase; Validated
Probab=96.38 E-value=0.0046 Score=56.68 Aligned_cols=41 Identities=22% Similarity=0.451 Sum_probs=34.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc---CCC--ccCcHHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKELLETFA 225 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTDeLIEq~a 225 (261)
+|.||+|+|++|+|||.++..+|..+ ||. |++..+|+++..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~ 150 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQ 150 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHH
Confidence 68899999999999999999998644 655 688999998763
No 186
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.37 E-value=0.0019 Score=54.06 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=30.2
Q ss_pred EEEEecCCCchhHHHHHHHHhcC---CCccCcHHHHHHHhC
Q 024881 189 IFLVGDSTEVNEKVALELAVGLG---YTPLSTKELLETFAK 226 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~Lg---Y~fvDTDeLIEq~ag 226 (261)
|.|+|.+||||||+++.|+..|+ -.+++.|.+.-....
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~ 42 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSH 42 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccccccc
Confidence 67999999999999999999983 557777776644433
No 187
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.37 E-value=0.0027 Score=61.03 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=34.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCc--HHHHHHHhCC
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQ 227 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT--DeLIEq~agk 227 (261)
.+..|.|.|++|+|||++++.+|..++.+|+.. .+++.+..|.
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge 222 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGE 222 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcch
Confidence 367899999999999999999999999988654 3555555554
No 188
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.37 E-value=0.0077 Score=54.36 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=45.4
Q ss_pred cchhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCC-----CccCcHHHHHHHh
Q 024881 171 ESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGY-----TPLSTKELLETFA 225 (261)
Q Consensus 171 e~We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY-----~fvDTDeLIEq~a 225 (261)
..=.++...+...-+|.|++|.|.+|+|||-++..+|.+|-. .|+.+.+++.++.
T Consensus 90 ~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk 149 (254)
T COG1484 90 KALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLK 149 (254)
T ss_pred HHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 345677777777779999999999999999999999888742 3788889888776
No 189
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.36 E-value=0.0045 Score=54.95 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=25.6
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCc
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTP 214 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~f 214 (261)
.+++|.|++|+|||++++.+|..+|..+
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4699999999999999999999998764
No 190
>PLN02772 guanylate kinase
Probab=96.33 E-value=0.0079 Score=58.77 Aligned_cols=121 Identities=15% Similarity=0.168 Sum_probs=71.0
Q ss_pred cccccccccccccCCCCCCceEEcccCce----EEEEEe--------cCC--cccccccc--eEEEeeCCEEEEEEccCC
Q 024881 61 DRRRFTCSNSLSSIPANTSQYEFSDGSAE----IELRLQ--------LGS--LEIQSSKD--IFVDADGTCLTVRVNRSG 124 (261)
Q Consensus 61 ~~~~~~~~~~~~~~~~~t~~Y~wTqtl~E----vEvrlp--------l~~--~~~~~skD--v~Vd~~~~sL~V~vk~~~ 124 (261)
.+..-|| +|-++.......|.|--...+ ..|++= .|. ...-.+|| -.|-+++++|.|-=|+.+
T Consensus 19 ~~~~~~~-~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~ 97 (398)
T PLN02772 19 GFGVKPK-NRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA 97 (398)
T ss_pred CccCCCC-CcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCC
Confidence 4445588 888888888889999743332 244431 111 01123333 456666777766434432
Q ss_pred cceeeeecccccCCCCCCceeeEEecCeEEEEEEe----cCCCCCCcccccchhHHHHHHHhhcCCceEEEEecCCCchh
Q 024881 125 SFITLIETNQLFDKIKPTETIWYIDEDQLVINLKK----QDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNE 200 (261)
Q Consensus 125 ~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~K----~d~~m~Wp~~~e~We~l~~g~~~lLkG~sIyLVGmmGsGKS 200 (261)
++||+|+++=|+=.|.=+| .+. ..|+ .|+.. -+++-|+|+|++|+||+
T Consensus 98 ----------------~~~~~w~l~~~t~~~~~~~~~~~~eV-~~~~----------~~~~~-~~~k~iVlsGPSGvGKs 149 (398)
T PLN02772 98 ----------------PDDSIWFLEVDTPFVREQKKLLGTEV-VAWS----------KGVRG-NAEKPIVISGPSGVGKG 149 (398)
T ss_pred ----------------CccceEEEEcCCHHHHhhccccccee-eecc----------cCCCC-CCCcEEEEECCCCCCHH
Confidence 4699999997554432221 112 3341 11111 12346999999999999
Q ss_pred HHHHHHHHhc
Q 024881 201 KVALELAVGL 210 (261)
Q Consensus 201 TVGr~LA~~L 210 (261)
|+.+.|.+.+
T Consensus 150 TL~~~L~~~~ 159 (398)
T PLN02772 150 TLISMLMKEF 159 (398)
T ss_pred HHHHHHhhhc
Confidence 9999998753
No 191
>PRK04195 replication factor C large subunit; Provisional
Probab=96.33 E-value=0.0034 Score=60.76 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=29.3
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT 217 (261)
...++|.|++|+||||+++.||+.+||.++..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 56799999999999999999999999988755
No 192
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=96.32 E-value=0.041 Score=41.80 Aligned_cols=74 Identities=20% Similarity=0.322 Sum_probs=57.0
Q ss_pred EcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccC---------------CcceeeeecccccCCCCCCceeeE
Q 024881 83 FSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRS---------------GSFITLIETNQLFDKIKPTETIWY 147 (261)
Q Consensus 83 wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~---------------~~~~tlId~g~L~~kIk~~Et~W~ 147 (261)
+.++...+.|++.+|+ ....|+.|.++++.|.|.-+.. +.+..- =+|++.+.++.-...
T Consensus 2 i~e~~~~~~i~~~lpG---~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~---~~lP~~vd~~~i~a~ 75 (102)
T PF00011_consen 2 IKEDEDEYIIKVDLPG---FDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERS---IRLPEDVDPDKIKAS 75 (102)
T ss_dssp EEESSSEEEEEEE-TT---S-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEE---EE-STTB-GGG-EEE
T ss_pred eEECCCEEEEEEECCC---CChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEE---EcCCCcCCcceEEEE
Confidence 6788899999999998 4577999999999999988776 233222 247778888888888
Q ss_pred EecCeEEEEEEecCC
Q 024881 148 IDEDQLVINLKKQDP 162 (261)
Q Consensus 148 IdD~~lvv~L~K~d~ 162 (261)
++|..|.|.+.|...
T Consensus 76 ~~~GvL~I~~pk~~~ 90 (102)
T PF00011_consen 76 YENGVLTITIPKKEE 90 (102)
T ss_dssp ETTSEEEEEEEBSSS
T ss_pred ecCCEEEEEEEcccc
Confidence 999999999999876
No 193
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.0027 Score=66.63 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=32.7
Q ss_pred HHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881 180 SMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPL 215 (261)
Q Consensus 180 ~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv 215 (261)
+..-.+|.-|+|+|++|.|||++||-+|.+||..|+
T Consensus 432 Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 432 LRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred hcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 445678889999999999999999999999999987
No 194
>PLN02748 tRNA dimethylallyltransferase
Probab=96.30 E-value=0.0029 Score=62.60 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=32.2
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDe 219 (261)
+|.-|+++|..|+|||+++..||+++|+..++.|.
T Consensus 21 ~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 21 KAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 44469999999999999999999999999999996
No 195
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.29 E-value=0.0029 Score=58.86 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=29.0
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCccCcHH
Q 024881 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDe 219 (261)
|+++|++|+|||+++..||+.+|...+..|.
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds 32 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDS 32 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence 7899999999999999999999988888876
No 196
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.28 E-value=0.004 Score=53.00 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=28.1
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcC--CCccCc
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLG--YTPLST 217 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~Lg--Y~fvDT 217 (261)
++.|+++|.+|||||+.+..||.++| +.+++|
T Consensus 1 ~~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat 34 (170)
T PRK05800 1 GMLILVTGGARSGKSRFAERLAAQSGLQVLYIAT 34 (170)
T ss_pred CCEEEEECCCCccHHHHHHHHHHHcCCCcEeCcC
Confidence 35799999999999999999999987 557777
No 197
>PF13173 AAA_14: AAA domain
Probab=96.27 E-value=0.006 Score=48.27 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=31.8
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcC----CCccCcHHHHHH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLG----YTPLSTKELLET 223 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~Lg----Y~fvDTDeLIEq 223 (261)
+..+.|.|..|+||||+.+.+|+.+. +-++|.|+.-..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~ 43 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDR 43 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHH
Confidence 34689999999999999999999887 777877766554
No 198
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.26 E-value=0.004 Score=59.89 Aligned_cols=54 Identities=13% Similarity=0.200 Sum_probs=42.6
Q ss_pred ccchhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCccC--cHHHHHHH
Q 024881 170 VESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLETF 224 (261)
Q Consensus 170 ~e~We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD--TDeLIEq~ 224 (261)
..-|+.+-.-+..-+.- +|.|+|..|+||||+++.||+.+|+.++. ..+.+++.
T Consensus 204 ~~~w~~i~~~vr~~~~~-~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~~~ 259 (399)
T PRK08099 204 FRYWEYIPTEVRPFFVR-TVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFSH 259 (399)
T ss_pred HHHHHhcCHHHhhCCCc-EEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHHHh
Confidence 33499999888876665 49999999999999999999999998543 33455543
No 199
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.26 E-value=0.0044 Score=50.74 Aligned_cols=30 Identities=30% Similarity=0.308 Sum_probs=25.8
Q ss_pred EEEEecCCCchhHHHHHHHHhc---CCC--ccCcH
Q 024881 189 IFLVGDSTEVNEKVALELAVGL---GYT--PLSTK 218 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTD 218 (261)
+.++|++|+||||+.+.||..+ |++ ++|+|
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 6789999999999999999886 775 47877
No 200
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.24 E-value=0.0036 Score=60.94 Aligned_cols=32 Identities=22% Similarity=0.161 Sum_probs=28.5
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD 216 (261)
.+.+|.|+|++|+|||++++.||+.||.+|+-
T Consensus 115 ~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~ 146 (413)
T TIGR00382 115 SKSNILLIGPTGSGKTLLAQTLARILNVPFAI 146 (413)
T ss_pred CCceEEEECCCCcCHHHHHHHHHHhcCCCeEE
Confidence 34589999999999999999999999988863
No 201
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=96.23 E-value=0.0037 Score=54.16 Aligned_cols=27 Identities=33% Similarity=0.333 Sum_probs=24.4
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881 189 IFLVGDSTEVNEKVALELAVGLGYTPL 215 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~LgY~fv 215 (261)
|.+-|..||||||+++.||+.|++.++
T Consensus 2 I~iEG~~GsGKSTl~~~L~~~l~~~~~ 28 (219)
T cd02030 2 ITVDGNIASGKGKLAKELAEKLGMKYF 28 (219)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 788999999999999999999987544
No 202
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=96.21 E-value=0.0013 Score=52.79 Aligned_cols=62 Identities=8% Similarity=0.140 Sum_probs=40.5
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHH--------HHHHhhCchhHHhhHHHHHHH
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTID--------SWMLAEGSDSVVNGECDVLES 251 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~--------eIFaeeGE~~FRelEs~VLee 251 (261)
+|.|||++|+||||+.+.++..--..-.+ .-+.....+++. ++++..|.+.|+.+....++.
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 72 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFIESYD--PTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKS 72 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccC--CcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhh
Confidence 69999999999999999998654222222 112222233333 577888888888776665543
No 203
>PLN02840 tRNA dimethylallyltransferase
Probab=96.20 E-value=0.0034 Score=61.57 Aligned_cols=41 Identities=27% Similarity=0.311 Sum_probs=35.0
Q ss_pred HHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHH
Q 024881 179 GSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (261)
Q Consensus 179 g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDe 219 (261)
|..+..++.-|+++|..|+||||++..||+.+|..+++.|.
T Consensus 14 ~~~~~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 14 GASKTKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred ccccccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 44456667779999999999999999999999988887775
No 204
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.19 E-value=0.0046 Score=53.25 Aligned_cols=27 Identities=15% Similarity=0.068 Sum_probs=23.2
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHh
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
-=+|.-|+|+|.+|+||||+.+.|++.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 346777999999999999999999853
No 205
>PRK06526 transposase; Provisional
Probab=96.19 E-value=0.007 Score=54.71 Aligned_cols=41 Identities=12% Similarity=0.231 Sum_probs=33.2
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc---CCC--ccCcHHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKELLETFA 225 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTDeLIEq~a 225 (261)
++.||+|+|+.|+|||.++..||..+ ||+ |+...+++++..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~ 142 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLA 142 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHH
Confidence 57799999999999999999998764 665 456677777664
No 206
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.17 E-value=0.0069 Score=52.05 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=46.2
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcC----------------------CCccCcHHHHHHHh---------------CC
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLG----------------------YTPLSTKELLETFA---------------KQ 227 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg----------------------Y~fvDTDeLIEq~a---------------gk 227 (261)
+|.=|+|+|++|+||+||.+.|.+.+. |.|++-++.-+... |-
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YGt 82 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGT 82 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeecC
Confidence 466799999999999999999988762 67777666544422 11
Q ss_pred ---CHHHHHHhhCchhHHhhHHHHHHHHhc
Q 024881 228 ---TIDSWMLAEGSDSVVNGECDVLESLIM 254 (261)
Q Consensus 228 ---SI~eIFaeeGE~~FRelEs~VLeels~ 254 (261)
+|.++ .++|...+-+++-+.+.++..
T Consensus 83 ~~~~i~~~-~~~g~~~i~d~~~~g~~~l~~ 111 (186)
T PRK14737 83 PKAFIEDA-FKEGRSAIMDIDVQGAKIIKE 111 (186)
T ss_pred cHHHHHHH-HHcCCeEEEEcCHHHHHHHHH
Confidence 24444 355555555666666666654
No 207
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.15 E-value=0.0044 Score=52.02 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=23.5
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.|+-|+|+|++|+||+|+.+.|.+..
T Consensus 1 ~~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 1 DRRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhcC
Confidence 36789999999999999999998885
No 208
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.14 E-value=0.0044 Score=62.92 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=31.1
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCccC--cHHHHHH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLET 223 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD--TDeLIEq 223 (261)
+..|+|.|++|+|||++++.+|..+|..|+. ..+++.+
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 5679999999999999999999999988763 3344433
No 209
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.13 E-value=0.0041 Score=62.87 Aligned_cols=40 Identities=15% Similarity=0.225 Sum_probs=31.8
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCc--HHHHHHHhC
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAK 226 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT--DeLIEq~ag 226 (261)
.+|.|+|++|+|||++++.+|..+|.+|+.. .++.+...|
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g 227 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVG 227 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhc
Confidence 3599999999999999999999999988754 344444333
No 210
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.13 E-value=0.0045 Score=56.79 Aligned_cols=30 Identities=20% Similarity=0.129 Sum_probs=25.8
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT 217 (261)
|+.|.|++|.||||+|+.+|+.+|+.|.-+
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~ 81 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELGVNFKIT 81 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT--EEEE
T ss_pred eEEEECCCccchhHHHHHHHhccCCCeEec
Confidence 799999999999999999999999988543
No 211
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=96.11 E-value=0.0069 Score=52.51 Aligned_cols=70 Identities=16% Similarity=0.155 Sum_probs=45.9
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCC--ccCcHHHHHHHhCCCHH---HH-HH---hhCchhHHhhHHHHHHHHhcc
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYT--PLSTKELLETFAKQTID---SW-ML---AEGSDSVVNGECDVLESLIMF 255 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~--fvDTDeLIEq~agkSI~---eI-Fa---eeGE~~FRelEs~VLeels~~ 255 (261)
|.=|+|-|.|-|||||++|.|...|.=+ .+..|.+++.+..+-.. .+ +. .++++.|+.++....+.+..+
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~ 79 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAM 79 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHH
Confidence 4569999999999999999999999654 46779999854432221 10 11 112577888888877776654
No 212
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.11 E-value=0.0046 Score=55.68 Aligned_cols=50 Identities=28% Similarity=0.360 Sum_probs=37.9
Q ss_pred HHHHHHHhhc---CCceEEEEecCCCchhHHHHHHHHhc---CCC--ccCcHHHHHHH
Q 024881 175 SLTAGSMQLL---KGTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKELLETF 224 (261)
Q Consensus 175 ~l~~g~~~lL---kG~sIyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTDeLIEq~ 224 (261)
.+++.-.+.+ +|.-|.|.|.+||||||+|..|++.| ||. .+|-|.+=.-.
T Consensus 9 ~v~~~~r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL 66 (197)
T COG0529 9 SVTKQEREALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGL 66 (197)
T ss_pred ccCHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcc
Confidence 3555555555 45579999999999999999999987 776 47888775443
No 213
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=96.05 E-value=0.045 Score=41.68 Aligned_cols=73 Identities=14% Similarity=0.311 Sum_probs=57.8
Q ss_pred eEEcccCceEEEEEecCCcccccccceEEEeeCC-EEEEEEccC-----------------CcceeeeecccccCCCCCC
Q 024881 81 YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGT-CLTVRVNRS-----------------GSFITLIETNQLFDKIKPT 142 (261)
Q Consensus 81 Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~-sL~V~vk~~-----------------~~~~tlId~g~L~~kIk~~ 142 (261)
+.|.++-.++.|++.||+ .+..|+.|+++++ .|+|.-++. +.+.. +=.|++.|.++
T Consensus 2 ~dv~E~~~~~~i~~~lPG---v~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r---~i~LP~~v~~~ 75 (92)
T cd06472 2 VDWKETPEAHVFKADVPG---VKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVR---RFRLPENADAD 75 (92)
T ss_pred ccEEEcCCeEEEEEECCC---CChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEE---EEECCCCCCHH
Confidence 467789999999999999 6788999999875 899987543 12211 12578889888
Q ss_pred ceeeEEecCeEEEEEEe
Q 024881 143 ETIWYIDEDQLVINLKK 159 (261)
Q Consensus 143 Et~W~IdD~~lvv~L~K 159 (261)
.---.++|..|.|.|.|
T Consensus 76 ~i~A~~~nGvL~I~lPK 92 (92)
T cd06472 76 EVKAFLENGVLTVTVPK 92 (92)
T ss_pred HCEEEEECCEEEEEecC
Confidence 88889999999999876
No 214
>PRK09087 hypothetical protein; Validated
Probab=96.04 E-value=0.0032 Score=55.59 Aligned_cols=35 Identities=11% Similarity=0.015 Sum_probs=31.3
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHH
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLE 222 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIE 222 (261)
.+||+|..|+|||++.+.+++..+..++|.+++..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~ 80 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGS 80 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcch
Confidence 49999999999999999999999999999965444
No 215
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.07 Score=44.15 Aligned_cols=81 Identities=22% Similarity=0.359 Sum_probs=67.4
Q ss_pred CCCCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCC-----------------cceeeeecccccCC
Q 024881 76 ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSG-----------------SFITLIETNQLFDK 138 (261)
Q Consensus 76 ~~t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~-----------------~~~tlId~g~L~~k 138 (261)
..++.|..-++..++.|.+.||+ .+.+||.|.++++.|+|..+... .+..-| .|.+.
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG---~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~---~Lp~~ 111 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPG---VDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTF---RLPEK 111 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCC---CChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEE---ECccc
Confidence 34668999999999999999999 67999999999999999998753 332223 48889
Q ss_pred CCCCceeeEEecCeEEEEEEecCC
Q 024881 139 IKPTETIWYIDEDQLVINLKKQDP 162 (261)
Q Consensus 139 Ik~~Et~W~IdD~~lvv~L~K~d~ 162 (261)
|+++.--=..++..|+|.|.|..+
T Consensus 112 v~~~~~~A~~~nGvL~I~lpk~~~ 135 (146)
T COG0071 112 VDPEVIKAKYKNGLLTVTLPKAEP 135 (146)
T ss_pred ccccceeeEeeCcEEEEEEecccc
Confidence 998876667899999999999876
No 216
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.03 E-value=0.007 Score=53.22 Aligned_cols=51 Identities=24% Similarity=0.283 Sum_probs=38.6
Q ss_pred EecCCCCCCcccccchhHHHHHHHhhcCCc---eEEEEecCCCchhHHHHHHHHhc
Q 024881 158 KKQDPELKWPDIVESWESLTAGSMQLLKGT---SIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 158 ~K~d~~m~Wp~~~e~We~l~~g~~~lLkG~---sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+|.-| ..|.|+.. .+.+++-+.+.++.. +++|.|..|+|||++++.+|..+
T Consensus 9 ~kyrP-~~~~~~~g-~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 9 EKYRP-RTLDEIVG-QEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred hhhCC-CcHHHhcC-cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45556 56666653 445666777666543 59999999999999999999987
No 217
>PRK13695 putative NTPase; Provisional
Probab=95.98 E-value=0.0055 Score=50.62 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=24.3
Q ss_pred ceEEEEecCCCchhHHHHHHHHhc---CCCc
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGL---GYTP 214 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~L---gY~f 214 (261)
++|.|+|.+|+||||+.+.++..+ |+..
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~~ 31 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKV 31 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 479999999999999999998876 6653
No 218
>PRK07667 uridine kinase; Provisional
Probab=95.96 E-value=0.0062 Score=51.86 Aligned_cols=35 Identities=9% Similarity=0.090 Sum_probs=29.0
Q ss_pred eEEEEecCCCchhHHHHHHHHhcC-----CCccCcHHHHH
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLE 222 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~Lg-----Y~fvDTDeLIE 222 (261)
-|-+-|.+||||||+++.|++.|+ ...++.|+..-
T Consensus 19 iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~ 58 (193)
T PRK07667 19 ILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIV 58 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccc
Confidence 477889999999999999999873 34888988553
No 219
>CHL00176 ftsH cell division protein; Validated
Probab=95.93 E-value=0.0072 Score=61.63 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=31.1
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCc--HHHHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETF 224 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT--DeLIEq~ 224 (261)
.+|.|+|++|+|||++++.||..+|++|+.. .++.+..
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 4699999999999999999999999988754 3444443
No 220
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.93 E-value=0.0064 Score=60.35 Aligned_cols=32 Identities=28% Similarity=0.119 Sum_probs=28.1
Q ss_pred HHhhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 180 SMQLLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 180 ~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
+..+..|.+|.|.|++|+|||++++.||..++
T Consensus 188 ~~~L~~~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 188 LKRLTIKKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred HHHHhcCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 44455788999999999999999999999985
No 221
>PLN03025 replication factor C subunit; Provisional
Probab=95.91 E-value=0.0077 Score=54.90 Aligned_cols=51 Identities=25% Similarity=0.271 Sum_probs=35.7
Q ss_pred EecCCCCCCcccccchhHHHHHHHhhcCC---ceEEEEecCCCchhHHHHHHHHhc
Q 024881 158 KKQDPELKWPDIVESWESLTAGSMQLLKG---TSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 158 ~K~d~~m~Wp~~~e~We~l~~g~~~lLkG---~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+|.-| -.+-|++- .+-+++.+.+.+++ .+++|.|++|+||||+++.+|+.|
T Consensus 5 ~kyrP-~~l~~~~g-~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 5 EKYRP-TKLDDIVG-NEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred hhcCC-CCHHHhcC-cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34444 44545542 34455555555443 479999999999999999999998
No 222
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.91 E-value=0.0068 Score=47.18 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=25.0
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|..+.|+|.+|+||||+.+.|+..+
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEccCCCccccceeeecccc
Confidence 4468889999999999999999998776
No 223
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.90 E-value=0.0053 Score=52.01 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=28.6
Q ss_pred EEEEecCCCchhHHHHHHHHhcC-----CCccCcHHHHH
Q 024881 189 IFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLE 222 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~Lg-----Y~fvDTDeLIE 222 (261)
|.+.|.+||||||+++.|++.|+ ...+..|++.-
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 67899999999999999999983 35677787764
No 224
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.90 E-value=0.0062 Score=56.84 Aligned_cols=30 Identities=17% Similarity=0.090 Sum_probs=26.4
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
.+-+|..+-|||-+|+||||+||.|...+.
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 455788899999999999999999998765
No 225
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.026 Score=50.33 Aligned_cols=88 Identities=17% Similarity=0.308 Sum_probs=69.6
Q ss_pred ceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEEEEe
Q 024881 80 QYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKK 159 (261)
Q Consensus 80 ~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~K 159 (261)
.--|.|.-.=|=|.|-|.. ++|+.|.+..+.|.+.-|+...---+...=+||++|.|.+++=.+-...|.+-|+|
T Consensus 9 ~v~Waqr~~~vyltv~Ved-----~~d~~v~~e~~~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~K 83 (180)
T KOG3158|consen 9 EVKWAQRRDLVYLTVCVED-----AKDVHVNLEPSKLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILRK 83 (180)
T ss_pred cchhhhhcCeEEEEEEecc-----CccceeeccccEEEEEeccCCCceeeEEeeehhhhcCHhhccccccceEEEEEEEc
Confidence 3468888777767776665 79999999999999998884432222222469999999999988888999999999
Q ss_pred cCCCCCCcccccchhHHHHH
Q 024881 160 QDPELKWPDIVESWESLTAG 179 (261)
Q Consensus 160 ~d~~m~Wp~~~e~We~l~~g 179 (261)
.+.+ +| |+.||+-
T Consensus 84 ~e~~-~~------WprLtke 96 (180)
T KOG3158|consen 84 KELG-EY------WPRLTKE 96 (180)
T ss_pred cccc-cc------cchhhhc
Confidence 9995 88 9999864
No 226
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.83 E-value=0.011 Score=56.17 Aligned_cols=33 Identities=15% Similarity=0.014 Sum_probs=29.0
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT 217 (261)
+..+++|.|++|+||||+++.||+.++..|+..
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l 67 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGATDAPFEAL 67 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 344899999999999999999999999988754
No 227
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.83 E-value=0.0081 Score=45.97 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=20.3
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+..++++|..|+|||++.+.+++.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHh
Confidence 4569999999999999999999987
No 228
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.81 E-value=0.0092 Score=60.92 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=31.1
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc----------CCCccCcH--HHH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL----------GYTPLSTK--ELL 221 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L----------gY~fvDTD--eLI 221 (261)
..|+.|+|++|+|||++++.||+++ |+.++..| .++
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~ 250 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLL 250 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHh
Confidence 4489999999999999999999998 88887766 555
No 229
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.77 E-value=0.0076 Score=61.97 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=29.6
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPL 215 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv 215 (261)
.+|.++.|+|++|+|||++++.||..||..|+
T Consensus 345 ~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~ 376 (775)
T TIGR00763 345 MKGPILCLVGPPGVGKTSLGKSIAKALNRKFV 376 (775)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCCeE
Confidence 46778999999999999999999999998886
No 230
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.77 E-value=0.0064 Score=55.34 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=33.6
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCc
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGS 238 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE 238 (261)
+-|.+-||-|+||||+++.||+.||.. .+.|-+..-..-+.|-++=+
T Consensus 5 ~~IvI~G~IG~GKSTLa~~La~~l~~~-----~~~E~vednp~L~~FY~d~~ 51 (216)
T COG1428 5 MVIVIEGMIGAGKSTLAQALAEHLGFK-----VFYELVEDNPFLDLFYEDPE 51 (216)
T ss_pred cEEEEecccccCHHHHHHHHHHHhCCc-----eeeecccCChHHHHHHHhHH
Confidence 358999999999999999999999943 33444444455555554433
No 231
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.73 E-value=0.0084 Score=50.80 Aligned_cols=29 Identities=24% Similarity=0.225 Sum_probs=25.3
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 25 HITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578889999999999999999999765
No 232
>PF05729 NACHT: NACHT domain
Probab=95.73 E-value=0.0083 Score=46.84 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=21.8
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCC
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGY 212 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY 212 (261)
-+.|+|..|+||||+.+.+|..+-.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHh
Confidence 3789999999999999999987743
No 233
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.71 E-value=0.0085 Score=54.73 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=26.3
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPL 215 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fv 215 (261)
.+++|.|++|+|||++++.+|..+|..+.
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l~~~~~ 80 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEMGVNIR 80 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 47999999999999999999999988653
No 234
>PRK12377 putative replication protein; Provisional
Probab=95.70 E-value=0.013 Score=53.13 Aligned_cols=40 Identities=13% Similarity=0.265 Sum_probs=34.1
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc---CCC--ccCcHHHHHHHh
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKELLETFA 225 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTDeLIEq~a 225 (261)
..++||.|.+|+|||.++..+|..| ||. |++..++++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~ 145 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLH 145 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHH
Confidence 3589999999999999999999988 664 778888888663
No 235
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.69 E-value=0.0088 Score=51.42 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=25.1
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 22 DVRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44577789999999999999999999654
No 236
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=95.68 E-value=0.081 Score=38.11 Aligned_cols=70 Identities=23% Similarity=0.320 Sum_probs=55.9
Q ss_pred cccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccC----------------CcceeeeecccccCCCCCCceeeE
Q 024881 84 SDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRS----------------GSFITLIETNQLFDKIKPTETIWY 147 (261)
Q Consensus 84 Tqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~----------------~~~~tlId~g~L~~kIk~~Et~W~ 147 (261)
.++..++.+++.||+ .+..|+.|.+.++.|.|.-+.. +.+..-|. |++.+.++.-.-.
T Consensus 3 ~e~~~~~~i~~~lpg---~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~---LP~~vd~~~i~a~ 76 (88)
T cd06464 3 YETDDAYVVEADLPG---FKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFR---LPEDVDPDKIKAS 76 (88)
T ss_pred EEcCCEEEEEEECCC---CCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEE---CCCCcCHHHcEEE
Confidence 456689999999999 6777999999999999986554 23433333 7888888888888
Q ss_pred EecCeEEEEEEe
Q 024881 148 IDEDQLVINLKK 159 (261)
Q Consensus 148 IdD~~lvv~L~K 159 (261)
++|+.|.|.+.|
T Consensus 77 ~~~G~L~I~~pk 88 (88)
T cd06464 77 LENGVLTITLPK 88 (88)
T ss_pred EeCCEEEEEEcC
Confidence 999999999876
No 237
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.66 E-value=0.0094 Score=50.30 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=25.3
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 24 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 24 HIRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678889999999999999999998654
No 238
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.63 E-value=0.0088 Score=51.23 Aligned_cols=29 Identities=14% Similarity=0.029 Sum_probs=25.6
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 27 SVPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578889999999999999999999775
No 239
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.62 E-value=0.016 Score=52.70 Aligned_cols=48 Identities=25% Similarity=0.378 Sum_probs=38.5
Q ss_pred chhHHHHHHHhhc-----------CCceEEEEecCCCchhHHHHHHHHhc----C-C--CccCcHH
Q 024881 172 SWESLTAGSMQLL-----------KGTSIFLVGDSTEVNEKVALELAVGL----G-Y--TPLSTKE 219 (261)
Q Consensus 172 ~We~l~~g~~~lL-----------kG~sIyLVGmmGsGKSTVGr~LA~~L----g-Y--~fvDTDe 219 (261)
.|+.+...+.+.| +|..|.|+|..|+||||+...||..+ | + .++++|.
T Consensus 169 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 169 AWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred HHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3777887777766 35579999999999999999999876 3 3 3788886
No 240
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.61 E-value=0.01 Score=50.20 Aligned_cols=29 Identities=17% Similarity=0.005 Sum_probs=25.2
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 22 TVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578889999999999999999999654
No 241
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.60 E-value=0.0093 Score=50.78 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=21.1
Q ss_pred eEEEEecCCCchhHHHHHHHHhc
Q 024881 188 SIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+|+|.|.+|+||||+.+.+++.|
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 69999999999999999999998
No 242
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=95.59 E-value=0.018 Score=47.83 Aligned_cols=22 Identities=9% Similarity=-0.041 Sum_probs=20.0
Q ss_pred EEEEecCCCchhHHHHHHHHhc
Q 024881 189 IFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~L 210 (261)
++|+|++|+||||+.+.|++..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~~ 24 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTEQ 24 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhcc
Confidence 6799999999999999998874
No 243
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.59 E-value=0.014 Score=56.37 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=23.3
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCC
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGY 212 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY 212 (261)
.-++|+|++|+||||+++.||..|+-
T Consensus 79 ~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 79 QILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34899999999999999999999953
No 244
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.57 E-value=0.011 Score=49.83 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=25.1
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 23 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 23 SISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468889999999999999999999764
No 245
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.57 E-value=0.011 Score=49.88 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=24.9
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-.|..+.|+|.+|+||||+.+.||..+
T Consensus 23 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 23 TIKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34467889999999999999999999765
No 246
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.57 E-value=0.0026 Score=63.37 Aligned_cols=57 Identities=23% Similarity=0.236 Sum_probs=40.2
Q ss_pred CeEEEEEEecCCCCCCcccccchhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881 151 DQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (261)
Q Consensus 151 ~~lvv~L~K~d~~m~Wp~~~e~We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD 216 (261)
+.|+|+=+|++.=-.| +-....+.-.+.=+.|.|+.|+||||+.+.||+.|||..+.
T Consensus 19 ~eLavhkkKv~eV~~w---------l~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSW---------LEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred HHhhccHHHHHHHHHH---------HHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 5688888888773445 11222222223348999999999999999999999996554
No 247
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.57 E-value=0.012 Score=49.71 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=24.0
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+|.++.++|.+||||||+.+.|+..+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 58899999999999999999999776
No 248
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.56 E-value=0.011 Score=50.03 Aligned_cols=29 Identities=21% Similarity=0.080 Sum_probs=25.0
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 26 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 26 SIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 34467789999999999999999999765
No 249
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.54 E-value=0.016 Score=53.85 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=34.9
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc---CCC--ccCcHHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKELLETFA 225 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTDeLIEq~a 225 (261)
.+.++||.|..|+|||.++..+|..| ||. |+..++++.+..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk 200 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELK 200 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHH
Confidence 46789999999999999999999988 775 568888877764
No 250
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.54 E-value=0.0091 Score=59.14 Aligned_cols=33 Identities=18% Similarity=0.110 Sum_probs=29.2
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCccCcH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTD 218 (261)
...|.|+|++|+|||.+++.+|..+|.+|+..|
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~ 291 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLD 291 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEEE
Confidence 345999999999999999999999999987654
No 251
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.53 E-value=0.011 Score=50.35 Aligned_cols=29 Identities=21% Similarity=0.054 Sum_probs=25.1
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 26 SVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578889999999999999999999664
No 252
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.52 E-value=0.011 Score=49.76 Aligned_cols=29 Identities=14% Similarity=0.043 Sum_probs=25.1
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-.|..+.|+|.+|+||||+.+.||..+
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 22 SVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578889999999999999999999754
No 253
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.52 E-value=0.009 Score=46.48 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=41.5
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCc-----------cCcHHHHHHHhCCCH---HHHHHhhCchhHHhhHHHHHHHHhc
Q 024881 189 IFLVGDSTEVNEKVALELAVGLGYTP-----------LSTKELLETFAKQTI---DSWMLAEGSDSVVNGECDVLESLIM 254 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~LgY~f-----------vDTDeLIEq~agkSI---~eIFaeeGE~~FRelEs~VLeels~ 254 (261)
|||.|.+|.|||+.++.||+.|.-.+ =-.++.-..+.||.+ +|+-....+. -...|++.+.=++.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~~~~~-~~~~~~~l~~l~s~ 79 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQDNDGY-NYSDESELIRLISS 79 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCcccccc-chHHHHHHHHHHhc
Confidence 68999999999999999998876222 234666677777765 3333333221 12355555544444
Q ss_pred c
Q 024881 255 F 255 (261)
Q Consensus 255 ~ 255 (261)
+
T Consensus 80 ~ 80 (107)
T PF00910_consen 80 N 80 (107)
T ss_pred C
Confidence 3
No 254
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.50 E-value=0.012 Score=49.29 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=25.3
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 20 TIEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578889999999999999999999765
No 255
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.50 E-value=0.013 Score=50.10 Aligned_cols=29 Identities=21% Similarity=0.062 Sum_probs=25.5
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 22 DIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34468889999999999999999999877
No 256
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.49 E-value=0.023 Score=49.21 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=20.7
Q ss_pred eEEEEecCCCchhHHHHHHHHh
Q 024881 188 SIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
-|.|+||.|.||||+++.+++.
T Consensus 21 ~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 21 VVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp EEEEEESTTSSHHHHHHHHHCH
T ss_pred EEEEEcCCcCCcceeeeecccc
Confidence 3999999999999999999988
No 257
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.49 E-value=0.012 Score=50.53 Aligned_cols=29 Identities=14% Similarity=0.118 Sum_probs=25.5
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 22 TVKKGEIHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578889999999999999999999764
No 258
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.48 E-value=0.012 Score=49.03 Aligned_cols=29 Identities=21% Similarity=0.223 Sum_probs=24.8
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.|+..+
T Consensus 14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 14 AAERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44567889999999999999999998654
No 259
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.47 E-value=0.012 Score=50.41 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=25.3
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 23 SINPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45578889999999999999999999655
No 260
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.46 E-value=0.011 Score=50.60 Aligned_cols=29 Identities=14% Similarity=0.001 Sum_probs=25.1
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+||||||+.+.||..+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 22 SVRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 44578889999999999999999999654
No 261
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.46 E-value=0.013 Score=41.25 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=24.7
Q ss_pred EEEEecCCCchhHHHHHHHHhc---CCCccCcH
Q 024881 189 IFLVGDSTEVNEKVALELAVGL---GYTPLSTK 218 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~L---gY~fvDTD 218 (261)
+.+.|..|+||||++..||..| ||+.+=.|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 5778999999999999999998 76655444
No 262
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.46 E-value=0.011 Score=48.92 Aligned_cols=29 Identities=17% Similarity=0.050 Sum_probs=25.4
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 22 TVEKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678889999999999999999998764
No 263
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.45 E-value=0.012 Score=49.39 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=25.2
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-.|..+.|+|.+|+||||+.+.||-.+
T Consensus 22 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 22 TVKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578889999999999999999999654
No 264
>PRK06921 hypothetical protein; Provisional
Probab=95.45 E-value=0.018 Score=52.29 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=33.0
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc----CCC--ccCcHHHHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL----GYT--PLSTKELLETF 224 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L----gY~--fvDTDeLIEq~ 224 (261)
.+.++||.|..|+|||.++..+|..+ |+. |+...+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l 161 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDL 161 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHH
Confidence 47789999999999999999999876 564 67777777664
No 265
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.44 E-value=0.013 Score=49.98 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=25.0
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 22 RVRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34478889999999999999999999754
No 266
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.44 E-value=0.013 Score=49.73 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=25.1
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 24 NVYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44577789999999999999999999765
No 267
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.43 E-value=0.012 Score=61.22 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=30.3
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPL 215 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv 215 (261)
..+|..|+|+|++|+||||+++.+|+.+|..|+
T Consensus 346 ~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~ 378 (784)
T PRK10787 346 KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYV 378 (784)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 357889999999999999999999999998885
No 268
>PRK07429 phosphoribulokinase; Provisional
Probab=95.42 E-value=0.0079 Score=56.56 Aligned_cols=35 Identities=26% Similarity=0.141 Sum_probs=29.4
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCC---CccCcHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGY---TPLSTKELL 221 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY---~fvDTDeLI 221 (261)
.-|-+.|.+||||||+++.|+..||. ..++.|++.
T Consensus 9 ~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 9 VLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred EEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 35889999999999999999999984 456777764
No 269
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.41 E-value=0.0077 Score=54.91 Aligned_cols=32 Identities=22% Similarity=0.181 Sum_probs=27.0
Q ss_pred EEEEecCCCchhHHHHHHHHhcC---CCccCcHHH
Q 024881 189 IFLVGDSTEVNEKVALELAVGLG---YTPLSTKEL 220 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~Lg---Y~fvDTDeL 220 (261)
|-|+|.+||||||+++.|+..|+ ...++.|++
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~ 36 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDY 36 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCceEEEECccc
Confidence 57899999999999999999884 456777765
No 270
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.41 E-value=0.013 Score=50.43 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=25.1
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 24 NINPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45578889999999999999999999654
No 271
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.40 E-value=0.023 Score=48.25 Aligned_cols=42 Identities=29% Similarity=0.381 Sum_probs=31.8
Q ss_pred HHHHhhc-----CCceEEEEecCCCchhHHHHHHHHhc---CCC--ccCcHH
Q 024881 178 AGSMQLL-----KGTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKE 219 (261)
Q Consensus 178 ~g~~~lL-----kG~sIyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTDe 219 (261)
.|+-++| +|.-+-+.|.+|+|||+++..+|..+ |++ |+|+++
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 3455555 36668899999999999999999765 555 787764
No 272
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.40 E-value=0.013 Score=49.32 Aligned_cols=29 Identities=17% Similarity=0.077 Sum_probs=25.2
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 22 DIADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468889999999999999999999765
No 273
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.40 E-value=0.013 Score=49.97 Aligned_cols=29 Identities=24% Similarity=0.203 Sum_probs=25.2
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 32 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 32 VVKRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 33478889999999999999999999765
No 274
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.39 E-value=0.013 Score=49.64 Aligned_cols=29 Identities=14% Similarity=0.145 Sum_probs=25.2
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 22 TVPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578889999999999999999998654
No 275
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.38 E-value=0.013 Score=50.53 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=25.1
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.+-+|..+.|+|.+|+||||+.+.||..+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 24 DCPQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578889999999999999999999654
No 276
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.37 E-value=0.013 Score=49.96 Aligned_cols=29 Identities=10% Similarity=0.068 Sum_probs=25.2
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 22 SVKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578889999999999999999999654
No 277
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.37 E-value=0.012 Score=49.68 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=25.2
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 21 EVKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 44578889999999999999999998764
No 278
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.37 E-value=0.012 Score=60.68 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=24.4
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
++..+||+|++|+||||+++.||++|.
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHHH
Confidence 556799999999999999999999873
No 279
>PRK04296 thymidine kinase; Provisional
Probab=95.35 E-value=0.014 Score=49.80 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=22.6
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
|.-++++|+||+||||.+..+|.++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 6678899999999999999999887
No 280
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.34 E-value=0.014 Score=50.35 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=25.1
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 23 TVRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 44578889999999999999999999654
No 281
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.34 E-value=0.013 Score=50.01 Aligned_cols=29 Identities=17% Similarity=0.138 Sum_probs=25.5
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 22 EVPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45588899999999999999999999654
No 282
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.34 E-value=0.021 Score=49.59 Aligned_cols=40 Identities=18% Similarity=0.028 Sum_probs=29.5
Q ss_pred hhHHHHHHHhhcCC----ceEEEEecCCCchhHHHHHHHHhcCC
Q 024881 173 WESLTAGSMQLLKG----TSIFLVGDSTEVNEKVALELAVGLGY 212 (261)
Q Consensus 173 We~l~~g~~~lLkG----~sIyLVGmmGsGKSTVGr~LA~~LgY 212 (261)
-+.|..-+...+.+ .-|.|.|.+||||||+++.|+..|..
T Consensus 16 ~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 16 HKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34444445544333 24889999999999999999999865
No 283
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.33 E-value=0.015 Score=48.39 Aligned_cols=29 Identities=17% Similarity=0.079 Sum_probs=25.0
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 22 NIEAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578889999999999999999999653
No 284
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.33 E-value=0.015 Score=54.29 Aligned_cols=53 Identities=21% Similarity=0.184 Sum_probs=37.1
Q ss_pred EecCCCCCCcccccchhHHHHHHHhhcCCc---e-EEEEecCCCchhHHHHHHHHhcCC
Q 024881 158 KKQDPELKWPDIVESWESLTAGSMQLLKGT---S-IFLVGDSTEVNEKVALELAVGLGY 212 (261)
Q Consensus 158 ~K~d~~m~Wp~~~e~We~l~~g~~~lLkG~---s-IyLVGmmGsGKSTVGr~LA~~LgY 212 (261)
+|+-| +.|-||+ -=+.+++.+.+.++.- + +.|.|+.|+||||+++.+|+.|+.
T Consensus 8 ~kyrP-~~~~~ii-Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 8 RKWRP-QYFRDII-GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred HHhCC-Cchhhcc-ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 35555 6665655 2244555555555432 3 579999999999999999999974
No 285
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.33 E-value=0.01 Score=50.34 Aligned_cols=40 Identities=20% Similarity=0.116 Sum_probs=25.5
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCc----HHHHHHHhCC
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLST----KELLETFAKQ 227 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT----DeLIEq~agk 227 (261)
+|.|.|.+|.|||++++.||+.+|..|-+- |-+..-+.|-
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~ 44 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGF 44 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEE
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceee
Confidence 578999999999999999999999998743 4444444444
No 286
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.32 E-value=0.016 Score=53.21 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=32.6
Q ss_pred ccchhHHHHHHHhhcCC---ceEEEEecCCCchhHHHHHHHHhc
Q 024881 170 VESWESLTAGSMQLLKG---TSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 170 ~e~We~l~~g~~~lLkG---~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.+-.+.+...+...++| .+++|.|++|+|||++.+.+++.+
T Consensus 36 e~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 36 EEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44556677776666543 679999999999999999999876
No 287
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.32 E-value=0.014 Score=49.31 Aligned_cols=29 Identities=21% Similarity=0.061 Sum_probs=25.1
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-.|..+.|+|.+|+||||+.+.||..+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 27 TVKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 44568889999999999999999999764
No 288
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.30 E-value=0.036 Score=44.93 Aligned_cols=36 Identities=19% Similarity=0.044 Sum_probs=27.6
Q ss_pred hhHHHHHHHhhc------CCceEEEEecCCCchhHHHHHHHH
Q 024881 173 WESLTAGSMQLL------KGTSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 173 We~l~~g~~~lL------kG~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
-+.|...+.+.+ ++.+|+++|++|+||||+-..|..
T Consensus 83 ~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 83 KGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred HHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhc
Confidence 344555555553 467899999999999999999975
No 289
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.30 E-value=0.015 Score=49.06 Aligned_cols=29 Identities=28% Similarity=0.234 Sum_probs=25.1
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.+-+|..+.|+|.+|+||||+.+.||..+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 22 DLYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568889999999999999999999764
No 290
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.29 E-value=0.016 Score=52.11 Aligned_cols=52 Identities=19% Similarity=0.305 Sum_probs=39.7
Q ss_pred EecCCCCCCcccccchhHHHHHHHhhcC-Cc--e-EEEEecCCCchhHHHHHHHHhcC
Q 024881 158 KKQDPELKWPDIVESWESLTAGSMQLLK-GT--S-IFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 158 ~K~d~~m~Wp~~~e~We~l~~g~~~lLk-G~--s-IyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
+|..+ |.|.||+ -.+.+...+.+.++ |. + +.|.|+.|.|||++++.||+.|.
T Consensus 6 ~~~rp-~~~~~ii-g~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 6 RKYRP-QTFEDVI-GQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred HHhCC-CcHhhcc-CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46667 8887775 46666777766664 32 3 56899999999999999999985
No 291
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.28 E-value=0.015 Score=50.06 Aligned_cols=28 Identities=18% Similarity=0.074 Sum_probs=24.3
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|..+.|+|.+|+||||+.+.||..+
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 32 IGEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467789999999999999999999754
No 292
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.27 E-value=0.015 Score=49.29 Aligned_cols=29 Identities=28% Similarity=0.294 Sum_probs=25.5
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578899999999999999999999654
No 293
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.27 E-value=0.013 Score=47.71 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=26.9
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL 221 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLI 221 (261)
.|.-+.|+|.+|+||||+.+.|. -|.-.++.|++.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di~ 48 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI--KRKHRLVGDDNV 48 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeHH
Confidence 46779999999999999999998 333445555553
No 294
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=95.27 E-value=0.019 Score=52.53 Aligned_cols=33 Identities=12% Similarity=-0.008 Sum_probs=24.2
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCc-cCcHHHH
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTP-LSTKELL 221 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~f-vDTDeLI 221 (261)
-|.++||+|||||||++.+.+ .|+.. +..-+-|
T Consensus 2 iI~i~G~~gsGKstva~~~~~-~g~~~~~~~~d~i 35 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIE-NYNAVKYQLADPI 35 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHh-cCCcEEEehhHHH
Confidence 488999999999999998855 45555 4433333
No 295
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.27 E-value=0.013 Score=57.93 Aligned_cols=33 Identities=15% Similarity=0.026 Sum_probs=29.5
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHH
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL 220 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeL 220 (261)
|..|-|++|+||||+|+.||+..++.|.-...+
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv 82 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNAAFEALSAV 82 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence 689999999999999999999999999755443
No 296
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.26 E-value=0.014 Score=49.26 Aligned_cols=28 Identities=21% Similarity=0.052 Sum_probs=23.6
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+| .+.|+|.+|+||||+.+.||..+
T Consensus 22 ~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 22 TLGPG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred EEcCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 34457 79999999999999999999654
No 297
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.26 E-value=0.017 Score=46.40 Aligned_cols=31 Identities=23% Similarity=0.207 Sum_probs=27.2
Q ss_pred EEEEecCCCchhHHHHHHHHhc---CCCc--cCcHH
Q 024881 189 IFLVGDSTEVNEKVALELAVGL---GYTP--LSTKE 219 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~L---gY~f--vDTDe 219 (261)
|.+.|..|+||||++..||+.| |++. +|+|.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 7899999999999999999877 7755 78886
No 298
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.25 E-value=0.016 Score=49.16 Aligned_cols=29 Identities=21% Similarity=0.099 Sum_probs=24.8
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 27 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 27 SIGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468889999999999999999998764
No 299
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.24 E-value=0.015 Score=50.07 Aligned_cols=29 Identities=10% Similarity=0.113 Sum_probs=25.2
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 23 NIDQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578889999999999999999999654
No 300
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.24 E-value=0.014 Score=53.16 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=27.6
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc---CCCc--cCcH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL---GYTP--LSTK 218 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L---gY~f--vDTD 218 (261)
+..|.|+|..|+||||++..||..| |++. +|+|
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3458899999999999999999887 7654 6776
No 301
>PRK06620 hypothetical protein; Validated
Probab=95.24 E-value=0.017 Score=50.61 Aligned_cols=35 Identities=6% Similarity=-0.112 Sum_probs=29.1
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL 221 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLI 221 (261)
.++||.|+.|+|||++++.+|+..+..++.-....
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~ 79 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFN 79 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhc
Confidence 45999999999999999999999998776644433
No 302
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.23 E-value=0.016 Score=50.45 Aligned_cols=29 Identities=14% Similarity=0.095 Sum_probs=25.1
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 25 KFEGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578889999999999999999999764
No 303
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=95.22 E-value=0.026 Score=51.82 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=32.5
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhC
Q 024881 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK 226 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~ag 226 (261)
|-|.|-.|+|||||.+.+- ++|++.+|+|.+--++-.
T Consensus 4 VGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~ 40 (225)
T KOG3220|consen 4 VGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVE 40 (225)
T ss_pred EEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhc
Confidence 4467778899999999997 999999999999888775
No 304
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.22 E-value=0.016 Score=50.10 Aligned_cols=29 Identities=17% Similarity=0.089 Sum_probs=24.8
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 24 DIPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34467789999999999999999999754
No 305
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=95.21 E-value=0.016 Score=50.50 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=25.1
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 22 SVAAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34478889999999999999999999654
No 306
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.20 E-value=0.016 Score=50.09 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=24.9
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.+-+|..+.|+|.+|+||||+.+.||..+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 25 EVKPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578889999999999999999999654
No 307
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=95.19 E-value=0.016 Score=49.95 Aligned_cols=29 Identities=10% Similarity=0.027 Sum_probs=25.3
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 25 TVNSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34478889999999999999999999765
No 308
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=95.19 E-value=0.15 Score=38.58 Aligned_cols=72 Identities=22% Similarity=0.230 Sum_probs=54.7
Q ss_pred eEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCC-------------------cceeeeecccccCCCCC
Q 024881 81 YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSG-------------------SFITLIETNQLFDKIKP 141 (261)
Q Consensus 81 Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~-------------------~~~tlId~g~L~~kIk~ 141 (261)
-.+.++...+.|++.||+ .+..||.|++.++.|.|..++.. .+..-| .|. .|.+
T Consensus 3 ~di~e~~~~~~i~~~lPG---v~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~---~lp-~v~~ 75 (93)
T cd06471 3 TDIKETDDEYIVEADLPG---FKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSF---YLP-NVDE 75 (93)
T ss_pred eeEEEcCCEEEEEEECCC---CCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEE---ECC-CCCH
Confidence 356678899999999998 67899999999999999776542 122222 243 5777
Q ss_pred CceeeEEecCeEEEEEEe
Q 024881 142 TETIWYIDEDQLVINLKK 159 (261)
Q Consensus 142 ~Et~W~IdD~~lvv~L~K 159 (261)
+.-.-..+|..|.|.|.|
T Consensus 76 ~~i~A~~~dGvL~I~lPK 93 (93)
T cd06471 76 EEIKAKYENGVLKITLPK 93 (93)
T ss_pred HHCEEEEECCEEEEEEcC
Confidence 777778888999998876
No 309
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.18 E-value=0.017 Score=50.25 Aligned_cols=30 Identities=13% Similarity=-0.033 Sum_probs=25.5
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
++-+|..+.|+|.+|+||||+.+.||..++
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14242 28 EFEQNQVTALIGPSGCGKSTFLRCLNRMND 57 (253)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 445777899999999999999999997543
No 310
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.18 E-value=0.02 Score=50.40 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=23.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
.+.++||.|+.|+|||++++.+|..+.
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 446899999999999999999998765
No 311
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.17 E-value=0.017 Score=48.51 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=24.8
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.-+|..+.|+|.+|+||||+.+.||..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478889999999999999999999875
No 312
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.16 E-value=0.018 Score=49.07 Aligned_cols=25 Identities=28% Similarity=0.157 Sum_probs=23.3
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCC
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGY 212 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY 212 (261)
|+.|+|++|+|||.+++.||+.|+-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 6899999999999999999999993
No 313
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.14 E-value=0.015 Score=51.08 Aligned_cols=23 Identities=22% Similarity=0.096 Sum_probs=20.9
Q ss_pred EEEEecCCCchhHHHHHHHHhcC
Q 024881 189 IFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
|-|.|.+||||||+++.|+..|.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 56889999999999999999984
No 314
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.14 E-value=0.018 Score=48.40 Aligned_cols=29 Identities=21% Similarity=0.107 Sum_probs=25.0
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.|+..+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 22 TLNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34577789999999999999999998764
No 315
>PRK15453 phosphoribulokinase; Provisional
Probab=95.13 E-value=0.017 Score=54.48 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=29.0
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcC-----CCccCcHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELL 221 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg-----Y~fvDTDeLI 221 (261)
++..|-+.|.+||||||+++.||+.|+ -.+++.|.+=
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh 45 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH 45 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence 455799999999999999999999775 2346666543
No 316
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=95.13 E-value=0.017 Score=50.72 Aligned_cols=29 Identities=10% Similarity=0.044 Sum_probs=25.3
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-.|..+.|+|.+|+||||+.+.||..+
T Consensus 35 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 35 DIAKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44577889999999999999999999765
No 317
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.13 E-value=0.018 Score=48.51 Aligned_cols=29 Identities=10% Similarity=0.015 Sum_probs=24.9
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 22 HVKKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 44578889999999999999999999654
No 318
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=95.12 E-value=0.014 Score=59.07 Aligned_cols=29 Identities=34% Similarity=0.315 Sum_probs=26.5
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++.+|..+-|||.+||||||+||.||..+
T Consensus 313 ~l~~GE~lglVGeSGsGKSTlar~i~gL~ 341 (539)
T COG1123 313 DLREGETLGLVGESGSGKSTLARILAGLL 341 (539)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67788999999999999999999999766
No 319
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.12 E-value=0.017 Score=50.16 Aligned_cols=29 Identities=14% Similarity=0.019 Sum_probs=25.1
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 27 EVREQEIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 44578889999999999999999999653
No 320
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.11 E-value=0.024 Score=56.55 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=40.1
Q ss_pred EecCCCCCCcccccchhHHHHHHHh-hcCCc---eEEEEecCCCchhHHHHHHHHhcCCC
Q 024881 158 KKQDPELKWPDIVESWESLTAGSMQ-LLKGT---SIFLVGDSTEVNEKVALELAVGLGYT 213 (261)
Q Consensus 158 ~K~d~~m~Wp~~~e~We~l~~g~~~-lLkG~---sIyLVGmmGsGKSTVGr~LA~~LgY~ 213 (261)
+|+.| ..|-|++ .-+.+++.+.. ..+|. .+.|.|+.|+||||+++.+|+.|++.
T Consensus 13 ~kyRP-~~f~dli-Gq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 13 RKYRP-SNFAELQ-GQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred hhhCC-CCHHHhc-CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 45666 6665554 34566666666 34554 58899999999999999999999874
No 321
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.10 E-value=0.02 Score=56.18 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=27.2
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhcC--CCccC
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG--YTPLS 216 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg--Y~fvD 216 (261)
..+.|+-|.|+|++|+|||++|-.+|+.|| .+|+.
T Consensus 46 ~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~ 82 (398)
T PF06068_consen 46 GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVS 82 (398)
T ss_dssp T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEE
T ss_pred ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeE
Confidence 456799999999999999999999999999 66654
No 322
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=95.07 E-value=0.019 Score=50.33 Aligned_cols=29 Identities=17% Similarity=0.072 Sum_probs=25.2
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 27 QANAGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34478889999999999999999999775
No 323
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.06 E-value=0.019 Score=49.50 Aligned_cols=29 Identities=7% Similarity=-0.182 Sum_probs=24.6
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+.-+|.-+.|+|.+|+||||+.+.||..+
T Consensus 9 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 9 VMGYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34568889999999999999999999654
No 324
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.05 E-value=0.02 Score=47.70 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=25.0
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.|+..+
T Consensus 21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 21 SIEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34478889999999999999999998754
No 325
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.05 E-value=0.019 Score=49.00 Aligned_cols=29 Identities=28% Similarity=0.147 Sum_probs=25.7
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 36 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 36 TLHPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 45578889999999999999999999765
No 326
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.05 E-value=0.019 Score=49.81 Aligned_cols=29 Identities=14% Similarity=0.072 Sum_probs=25.2
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 25 EIPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44578889999999999999999999765
No 327
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.04 E-value=0.02 Score=50.24 Aligned_cols=29 Identities=10% Similarity=0.036 Sum_probs=25.3
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~ 57 (259)
T PRK14260 29 DIYRNKVTAIIGPSGCGKSTFIKTLNRIS 57 (259)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 44478889999999999999999999764
No 328
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.04 E-value=0.019 Score=52.20 Aligned_cols=42 Identities=24% Similarity=0.221 Sum_probs=31.6
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCC---ccCcHHHHHHHhCCC
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYT---PLSTKELLETFAKQT 228 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~---fvDTDeLIEq~agkS 228 (261)
.=|-+.|.+|||||||++.|++.||=. .+..|.+......++
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~ 53 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLP 53 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcC
Confidence 346678999999999999999999944 666666665444444
No 329
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.04 E-value=0.028 Score=50.90 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=31.5
Q ss_pred ccchhHHHHHHHhhcCC---ceEEEEecCCCchhHHHHHHHHhc
Q 024881 170 VESWESLTAGSMQLLKG---TSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 170 ~e~We~l~~g~~~lLkG---~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.+..+.+..-+...+.| .++||.|++|+|||++.+.+++.|
T Consensus 21 e~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 21 DEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34455566666655544 579999999999999999999876
No 330
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.03 E-value=0.021 Score=50.04 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=25.2
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.+-+|..+.|+|.+|+||||+.+.||..+
T Consensus 34 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 34 SIPENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34578889999999999999999999765
No 331
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.03 E-value=0.022 Score=49.56 Aligned_cols=30 Identities=7% Similarity=-0.028 Sum_probs=25.4
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
++-+|..+.|+|.+|+||||+.+.||...|
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14245 25 EIEEKSVVAFIGPSGCGKSTFLRLFNRMND 54 (250)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhhhhc
Confidence 345688899999999999999999996544
No 332
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=95.02 E-value=0.019 Score=49.09 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=29.0
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcH
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTD 218 (261)
..|+-|.++|++|+||||++..|.++ |++++.-|
T Consensus 12 ~~g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD 45 (149)
T cd01918 12 VGGIGVLITGPSGIGKSELALELIKR-GHRLVADD 45 (149)
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECC
Confidence 45888999999999999999999886 78887544
No 333
>PRK08116 hypothetical protein; Validated
Probab=95.02 E-value=0.029 Score=50.92 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=32.4
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc---CCC--ccCcHHHHHHH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKELLETF 224 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTDeLIEq~ 224 (261)
+..+||.|..|+|||.++..+|+.| |++ |++.++++.++
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i 157 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI 157 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 4569999999999999999999986 665 56778877755
No 334
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.01 E-value=0.021 Score=48.24 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=24.5
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+=+|..+.|+|.+|+||||+.+.||..+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478889999999999999999998765
No 335
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.00 E-value=0.02 Score=50.69 Aligned_cols=29 Identities=17% Similarity=0.083 Sum_probs=25.2
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 23 TLESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578889999999999999999999654
No 336
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.00 E-value=0.02 Score=49.67 Aligned_cols=29 Identities=14% Similarity=-0.079 Sum_probs=25.1
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 26 DFEEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 44578889999999999999999999654
No 337
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.00 E-value=0.027 Score=58.70 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=29.3
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCcc--CcHHHHH
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPL--STKELLE 222 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fv--DTDeLIE 222 (261)
++.|+|++|+|||.+++.||+.||.+|+ |..++.|
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~ 526 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYME 526 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcc
Confidence 5899999999999999999999998875 4444433
No 338
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=94.99 E-value=0.02 Score=49.31 Aligned_cols=29 Identities=17% Similarity=0.159 Sum_probs=25.1
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-.|..+.|+|.+|+||||+.+.||..+
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 21 TVERGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578889999999999999999998753
No 339
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.98 E-value=0.031 Score=54.18 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=37.7
Q ss_pred chhHHHHHHHhhcC---------CceEEEEecCCCchhHHHHHHHHhc-----C--CCccCcHH
Q 024881 172 SWESLTAGSMQLLK---------GTSIFLVGDSTEVNEKVALELAVGL-----G--YTPLSTKE 219 (261)
Q Consensus 172 ~We~l~~g~~~lLk---------G~sIyLVGmmGsGKSTVGr~LA~~L-----g--Y~fvDTDe 219 (261)
.|..+...+.+.|. |..|.|||+.|+||||++..||.++ | -.++|+|.
T Consensus 198 ~~~~~~~~L~~~l~~~~~~~~~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 198 AWRYLLELLANMIPVRVEDILKQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred HHHHHHHHHHHHhCccccccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 57788877777663 6689999999999999999998754 2 34677876
No 340
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.98 E-value=0.042 Score=55.62 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=26.4
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCC
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYT 213 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~ 213 (261)
.|.+++|+|++|+|||++++.||+.|+-.
T Consensus 36 ~~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 36 QKRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 46689999999999999999999999765
No 341
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.96 E-value=0.022 Score=47.05 Aligned_cols=29 Identities=14% Similarity=0.116 Sum_probs=25.3
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578889999999999999999998654
No 342
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.95 E-value=0.02 Score=48.93 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=25.3
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||..+.||..+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 24 DIPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44578889999999999999999999765
No 343
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.95 E-value=0.02 Score=48.85 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=25.7
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-.|..+.|+|.+|+||||+.+.||..+
T Consensus 25 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 25 SIKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 55678889999999999999999999765
No 344
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=94.94 E-value=0.021 Score=49.54 Aligned_cols=29 Identities=17% Similarity=0.046 Sum_probs=25.2
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 23 DIPKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44578889999999999999999999665
No 345
>PTZ00301 uridine kinase; Provisional
Probab=94.94 E-value=0.019 Score=50.72 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=20.1
Q ss_pred EEEEecCCCchhHHHHHHHHhc
Q 024881 189 IFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~L 210 (261)
|-+.|.+||||||+++.|+++|
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHH
Confidence 6788999999999999999887
No 346
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=94.94 E-value=0.021 Score=49.18 Aligned_cols=27 Identities=15% Similarity=0.068 Sum_probs=24.3
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
-+|..+.|+|.+|+||||+.+.||..+
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999999754
No 347
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=94.93 E-value=0.021 Score=49.97 Aligned_cols=29 Identities=14% Similarity=0.000 Sum_probs=25.1
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 26 NIEPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34578889999999999999999999754
No 348
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.93 E-value=0.021 Score=49.49 Aligned_cols=29 Identities=10% Similarity=0.062 Sum_probs=25.1
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-.|..+.|+|.+|+||||+.+.||..+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 25 KIFKNQITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44578889999999999999999999654
No 349
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.92 E-value=0.023 Score=48.79 Aligned_cols=29 Identities=24% Similarity=0.171 Sum_probs=25.4
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 25 TIPPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred EecCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 45578889999999999999999999664
No 350
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.92 E-value=0.022 Score=49.31 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=25.2
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 23 EIAKGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578889999999999999999999654
No 351
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=94.91 E-value=0.02 Score=52.93 Aligned_cols=29 Identities=24% Similarity=0.156 Sum_probs=25.8
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|||.+|+||||+++.|+..+
T Consensus 29 ~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 29 TLTEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 45578889999999999999999999876
No 352
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=94.91 E-value=0.022 Score=49.90 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=25.4
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 28 DLYPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578889999999999999999999765
No 353
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.019 Score=56.19 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=29.9
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDe 219 (261)
.||.|||+.|||||-+|+-||+.|+-+|-=+|.
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADA 130 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADA 130 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccc
Confidence 389999999999999999999999999976654
No 354
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.89 E-value=0.02 Score=48.79 Aligned_cols=30 Identities=13% Similarity=0.136 Sum_probs=26.0
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
+.-+|..+.|+|.+|+||||+.+.||..+-
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 29 VVKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 445788899999999999999999998764
No 355
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.89 E-value=0.023 Score=47.99 Aligned_cols=29 Identities=17% Similarity=0.048 Sum_probs=25.5
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-.|..+.|+|.+|+||||+.+.||..+
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55688899999999999999999998654
No 356
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=94.89 E-value=0.022 Score=49.35 Aligned_cols=28 Identities=11% Similarity=0.069 Sum_probs=24.5
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHh
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
++-.|..+.|+|.+|+||||+.+.||..
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 27 DFYPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3457888999999999999999999865
No 357
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=94.88 E-value=0.022 Score=49.48 Aligned_cols=29 Identities=28% Similarity=0.247 Sum_probs=25.6
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 25 DLYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578889999999999999999999875
No 358
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.88 E-value=0.019 Score=47.55 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=25.7
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+.-+|..+.|+|.+|+||||+.+.||..+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55678889999999999999999999765
No 359
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.88 E-value=0.025 Score=42.56 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.6
Q ss_pred eEEEEecCCCchhHHHHHHHHhc
Q 024881 188 SIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.|+++|..|+||||+-+.|+..-
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998654
No 360
>PRK10908 cell division protein FtsE; Provisional
Probab=94.87 E-value=0.023 Score=48.43 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=24.8
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 24 HMRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34478889999999999999999998654
No 361
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.87 E-value=0.024 Score=47.02 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=25.2
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44578889999999999999999999764
No 362
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.86 E-value=0.023 Score=50.17 Aligned_cols=29 Identities=14% Similarity=-0.007 Sum_probs=25.0
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 43 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 43 DIEKHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 44577889999999999999999999754
No 363
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.86 E-value=0.023 Score=48.60 Aligned_cols=25 Identities=8% Similarity=0.045 Sum_probs=22.5
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcC
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
.+|.|+|++|+||||+-+.|++.++
T Consensus 23 ~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 23 VVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3699999999999999999998865
No 364
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=94.86 E-value=0.021 Score=49.52 Aligned_cols=28 Identities=14% Similarity=0.132 Sum_probs=24.8
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHh
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
++-+|..+.|+|.+|+||||+.+.||..
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 29 SINKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 4457888999999999999999999974
No 365
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.83 E-value=0.022 Score=50.53 Aligned_cols=29 Identities=17% Similarity=0.063 Sum_probs=25.1
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 23 DFSLSPVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 44578889999999999999999998654
No 366
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.83 E-value=0.021 Score=54.87 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=24.9
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+.-+|..+.+||.+||||||+.+.|+...
T Consensus 357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 357 DLPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45577889999999999999999998654
No 367
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.83 E-value=0.023 Score=49.59 Aligned_cols=29 Identities=21% Similarity=0.110 Sum_probs=25.5
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 29 KILKNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45578889999999999999999999765
No 368
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.83 E-value=0.024 Score=48.68 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=25.4
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 24 RIKPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 44578889999999999999999999665
No 369
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.83 E-value=0.024 Score=48.78 Aligned_cols=29 Identities=17% Similarity=0.085 Sum_probs=24.6
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 29 SLRAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34467889999999999999999999643
No 370
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.83 E-value=0.024 Score=48.56 Aligned_cols=23 Identities=4% Similarity=0.105 Sum_probs=21.1
Q ss_pred EEEEecCCCchhHHHHHHHHhcC
Q 024881 189 IFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
|.++|.+||||||+.+.|+..+.
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 88999999999999999888875
No 371
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.82 E-value=0.029 Score=58.11 Aligned_cols=34 Identities=18% Similarity=0.025 Sum_probs=30.1
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL 220 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeL 220 (261)
.+++|.|++|+||||+++.+|+.++..|+-.+..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~ 86 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV 86 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh
Confidence 4899999999999999999999999887766654
No 372
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=94.82 E-value=0.023 Score=48.91 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=24.8
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|..+.|+|.+|+||||+.+.||..+
T Consensus 9 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4478889999999999999999999765
No 373
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=94.81 E-value=0.022 Score=48.81 Aligned_cols=36 Identities=8% Similarity=0.120 Sum_probs=28.9
Q ss_pred HHHHHH-hhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 176 LTAGSM-QLLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 176 l~~g~~-~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
+..++. ++-+|..+.|+|.+|+||||+.+.|+..+-
T Consensus 22 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred cccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 344433 566888899999999999999999997664
No 374
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.81 E-value=0.024 Score=49.41 Aligned_cols=29 Identities=14% Similarity=-0.025 Sum_probs=24.7
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
+-+|..+.|+|.+|+||||+.+.||..++
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14261 29 IPKNRVTALIGPSGCGKSTLLRCFNRMND 57 (253)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhcccc
Confidence 34688899999999999999999996543
No 375
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.80 E-value=0.024 Score=49.26 Aligned_cols=29 Identities=14% Similarity=0.066 Sum_probs=25.5
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 26 KIPQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45578889999999999999999999765
No 376
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.80 E-value=0.025 Score=46.78 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=25.8
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-.|..+.|+|.+|+||||+.+.||..+
T Consensus 24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45578889999999999999999999875
No 377
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=94.80 E-value=0.023 Score=50.39 Aligned_cols=29 Identities=10% Similarity=0.092 Sum_probs=24.7
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-.|..+.|+|.+|+||||+.+.||..+
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 29 TVPRGKITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33467789999999999999999999765
No 378
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.80 E-value=0.022 Score=48.18 Aligned_cols=29 Identities=17% Similarity=0.035 Sum_probs=25.2
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578889999999999999999999764
No 379
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.80 E-value=0.025 Score=49.17 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=21.7
Q ss_pred eEEEEecCCCchhHHHHHHHHhcC
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
-|.|||+.|+||||....||.++.
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~ 26 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLK 26 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHh
Confidence 489999999999999999998774
No 380
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=94.79 E-value=0.025 Score=48.18 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=25.4
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 30 TVNAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578889999999999999999999765
No 381
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.78 E-value=0.025 Score=47.18 Aligned_cols=29 Identities=14% Similarity=-0.003 Sum_probs=25.1
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468889999999999999999999765
No 382
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.78 E-value=0.029 Score=57.07 Aligned_cols=50 Identities=18% Similarity=0.138 Sum_probs=38.2
Q ss_pred ccchhHHHHHHHhhc---------CCceEEEEecCCCchhHHHHHHHHhc-------CCCccCcHH
Q 024881 170 VESWESLTAGSMQLL---------KGTSIFLVGDSTEVNEKVALELAVGL-------GYTPLSTKE 219 (261)
Q Consensus 170 ~e~We~l~~g~~~lL---------kG~sIyLVGmmGsGKSTVGr~LA~~L-------gY~fvDTDe 219 (261)
.+.|..+..-+.+.| +|..|.|||..|+||||+...||.++ ...++++|.
T Consensus 325 ~~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDt 390 (559)
T PRK12727 325 HRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDT 390 (559)
T ss_pred hhHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccc
Confidence 345777777776644 67889999999999999999999764 134677775
No 383
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.78 E-value=0.025 Score=49.17 Aligned_cols=30 Identities=13% Similarity=-0.035 Sum_probs=25.7
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
++-+|..+.|+|.+|+||||+.+.||..+.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (252)
T PRK14255 27 DFNQNEITALIGPSGCGKSTYLRTLNRMND 56 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 345788899999999999999999997543
No 384
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.77 E-value=0.026 Score=47.83 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=24.9
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||..+.||..+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 26 SIKPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45578889999999999999999998653
No 385
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.77 E-value=0.02 Score=53.21 Aligned_cols=24 Identities=33% Similarity=0.266 Sum_probs=22.1
Q ss_pred EEEEecCCCchhHHHHHHHHhcCC
Q 024881 189 IFLVGDSTEVNEKVALELAVGLGY 212 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~LgY 212 (261)
|.|.|.+||||||.+++||+.|.=
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHH
Confidence 789999999999999999999843
No 386
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.76 E-value=0.024 Score=50.53 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.9
Q ss_pred ceEEEEecCCCchhHHHHHHHHhc
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++|++.||+|+||||+.+.+|..|
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 589999999999999999999655
No 387
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.75 E-value=0.026 Score=48.20 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=25.1
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 44578889999999999999999999653
No 388
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=94.75 E-value=0.026 Score=47.96 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=25.6
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-.|..+.|+|.+|+||||..+.||..+
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 20 NVADGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578899999999999999999999764
No 389
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.74 E-value=0.028 Score=46.54 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=25.0
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+.-+|..+.|+|.+|+||||+.+.||..+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 24 SIEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34568889999999999999999999754
No 390
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=94.74 E-value=0.026 Score=50.03 Aligned_cols=27 Identities=19% Similarity=-0.007 Sum_probs=23.9
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
-+|..+.|+|.+|+||||+.+.||..+
T Consensus 44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 44 EKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 357779999999999999999999765
No 391
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.74 E-value=0.027 Score=47.75 Aligned_cols=35 Identities=11% Similarity=0.053 Sum_probs=28.1
Q ss_pred HHHHHH-hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 176 LTAGSM-QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 176 l~~g~~-~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+.+++. ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 19 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 344443 55688889999999999999999999764
No 392
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.74 E-value=0.026 Score=49.14 Aligned_cols=29 Identities=10% Similarity=0.035 Sum_probs=25.6
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 26 DFPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34578889999999999999999999876
No 393
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.74 E-value=0.04 Score=53.27 Aligned_cols=39 Identities=18% Similarity=0.110 Sum_probs=30.0
Q ss_pred chhHHHHHHHhhc----------CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 172 SWESLTAGSMQLL----------KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 172 ~We~l~~g~~~lL----------kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
-|+.+...+.+.+ ++..|.|||..|+||||+...||.++
T Consensus 150 v~~~l~~~l~~~i~~~~~~~~~~~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 150 VRDSVIIYIAKTIKCSGSIIDNLKKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred HHHHHHHHHHHHhhccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4666655555443 35679999999999999999999876
No 394
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.74 E-value=0.042 Score=51.45 Aligned_cols=47 Identities=19% Similarity=0.105 Sum_probs=34.2
Q ss_pred hhHHHHHHHhhcC------------CceEEEEecCCCchhHHHHHHHHhc---CCC--ccCcHH
Q 024881 173 WESLTAGSMQLLK------------GTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKE 219 (261)
Q Consensus 173 We~l~~g~~~lLk------------G~sIyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTDe 219 (261)
++.|..-+.++|. |.-|.|||.+|+||||+.+.||..+ |+. .+|+|-
T Consensus 89 ~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 89 KELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred HHHHHHHHHHHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 4555555555553 5568999999999999999999887 553 355553
No 395
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.72 E-value=0.023 Score=50.90 Aligned_cols=29 Identities=7% Similarity=0.014 Sum_probs=25.0
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 33 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 33 TFKKNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44567789999999999999999999765
No 396
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.71 E-value=0.027 Score=49.04 Aligned_cols=29 Identities=14% Similarity=-0.041 Sum_probs=25.0
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-.|..+.|+|.+|+||||+.+.||-.+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 24 QIEQNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44577889999999999999999999654
No 397
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=94.71 E-value=0.027 Score=43.09 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.7
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
|.+|.|+|.+|+||||+...|..
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~ 23 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAG 23 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHC
Confidence 67899999999999999988864
No 398
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=94.71 E-value=0.023 Score=52.55 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=25.8
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
++=+|..+-|||.+||||||+++.|+..+.
T Consensus 29 ~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 29 SVKQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 455677799999999999999999998764
No 399
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.71 E-value=0.026 Score=48.59 Aligned_cols=29 Identities=7% Similarity=-0.004 Sum_probs=24.9
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 24 YVDPGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34477789999999999999999999754
No 400
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.71 E-value=0.026 Score=48.40 Aligned_cols=29 Identities=24% Similarity=0.169 Sum_probs=24.7
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++=+|..+.|+|.+|+||||+.+.||..+
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34468889999999999999999999654
No 401
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.70 E-value=0.027 Score=49.02 Aligned_cols=29 Identities=14% Similarity=-0.027 Sum_probs=25.0
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (251)
T PRK14270 26 PIYENKITALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34478889999999999999999999653
No 402
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=94.70 E-value=0.026 Score=50.20 Aligned_cols=29 Identities=17% Similarity=0.054 Sum_probs=25.0
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 29 TVPGGSIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44478889999999999999999999664
No 403
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.70 E-value=0.035 Score=49.83 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=34.3
Q ss_pred cCC-ceEEEEecCCCchhHHHHHHHHhc-CCCccCcHHHHHHHh
Q 024881 184 LKG-TSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELLETFA 225 (261)
Q Consensus 184 LkG-~sIyLVGmmGsGKSTVGr~LA~~L-gY~fvDTDeLIEq~a 225 (261)
++| +-+.++|-+|+|||||-+.+.+.| +|..+.--++.=..+
T Consensus 1 mk~~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A 44 (189)
T COG2019 1 MKGRKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIA 44 (189)
T ss_pred CCCceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHH
Confidence 355 468999999999999999999999 888888766654444
No 404
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.69 E-value=0.026 Score=50.37 Aligned_cols=29 Identities=10% Similarity=0.056 Sum_probs=25.2
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 26 ~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~ 54 (277)
T PRK13652 26 IAPRNSRIAVIGPNGAGKSTLFRHFNGIL 54 (277)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578889999999999999999999654
No 405
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.68 E-value=0.028 Score=47.80 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=25.3
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.|+..+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 24 TLAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44478889999999999999999999864
No 406
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=94.68 E-value=0.024 Score=52.62 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=25.5
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|||.+|+||||+++.|+..+
T Consensus 37 ~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 37 TLERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 44568889999999999999999999765
No 407
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.68 E-value=0.026 Score=48.95 Aligned_cols=29 Identities=17% Similarity=0.085 Sum_probs=25.5
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.+-+|..+.|+|.+|+||||+.+.||..+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 26 DVQRGTVNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44578889999999999999999999875
No 408
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=94.68 E-value=0.024 Score=50.05 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=24.2
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|..+.|+|.+|+||||+.+.||..+
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 34 FPAGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3468889999999999999999999654
No 409
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.68 E-value=0.024 Score=48.08 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=26.0
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-.|..+.|+|.+|+||||+.+.||..+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 22 TIKKGEVHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56688899999999999999999999764
No 410
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=94.68 E-value=0.027 Score=49.37 Aligned_cols=29 Identities=24% Similarity=0.176 Sum_probs=25.3
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 25 TLQRGRVLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578889999999999999999999764
No 411
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.67 E-value=0.028 Score=48.95 Aligned_cols=30 Identities=10% Similarity=-0.044 Sum_probs=25.7
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
.+-+|..+.|+|.+|+||||+.+.||..+.
T Consensus 27 ~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~ 56 (251)
T PRK14244 27 DIYKREVTAFIGPSGCGKSTFLRCFNRMND 56 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 345788899999999999999999997654
No 412
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=94.67 E-value=0.34 Score=37.09 Aligned_cols=65 Identities=20% Similarity=0.301 Sum_probs=50.5
Q ss_pred CceEEEEEecCCcccccccceEEEeeCCEEEEEEcc----------------CCcceeeeecccccCCCCCCceeeEEec
Q 024881 87 SAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNR----------------SGSFITLIETNQLFDKIKPTETIWYIDE 150 (261)
Q Consensus 87 l~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~----------------~~~~~tlId~g~L~~kIk~~Et~W~IdD 150 (261)
-++..|++.||+ .+..||.|.+.++.|+|.-++ .+.+..-|. |.+.|..+ -...+|
T Consensus 10 ~~~~~v~~~lPG---~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~---LP~~vd~~--~A~~~~ 81 (90)
T cd06470 10 ENNYRITLAVAG---FSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFN---LADHVKVK--GAELEN 81 (90)
T ss_pred CCeEEEEEECCC---CCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEE---CCCCceEC--eeEEeC
Confidence 379999999998 788999999999999998543 334444444 66777765 567899
Q ss_pred CeEEEEEEe
Q 024881 151 DQLVINLKK 159 (261)
Q Consensus 151 ~~lvv~L~K 159 (261)
..|.|.|.+
T Consensus 82 GvL~I~l~~ 90 (90)
T cd06470 82 GLLTIDLER 90 (90)
T ss_pred CEEEEEEEC
Confidence 999999874
No 413
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=94.66 E-value=0.022 Score=53.52 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=29.5
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCccCc------HHHHHHHh
Q 024881 189 IFLVGDSTEVNEKVALELAVGLGYTPLST------KELLETFA 225 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDT------DeLIEq~a 225 (261)
|.+.||+||||||..+.| +-+||-++|. ++++|...
T Consensus 4 vIiTGlSGaGKs~Al~~l-ED~Gy~cvDNlP~~Ll~~l~~~~~ 45 (284)
T PF03668_consen 4 VIITGLSGAGKSTALRAL-EDLGYYCVDNLPPSLLPQLIELLA 45 (284)
T ss_pred EEEeCCCcCCHHHHHHHH-HhcCeeEEcCCcHHHHHHHHHHHH
Confidence 678899999999999988 7799999995 45555544
No 414
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.65 E-value=0.028 Score=47.37 Aligned_cols=28 Identities=25% Similarity=0.143 Sum_probs=24.3
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHh
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
++-+|..+.|+|.+|+||||..+.||..
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4457888999999999999999999953
No 415
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=94.65 E-value=0.028 Score=48.65 Aligned_cols=28 Identities=18% Similarity=0.090 Sum_probs=24.7
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|..+.|+|.+|+||||+.+.||..+
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478889999999999999999999665
No 416
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.65 E-value=0.042 Score=49.03 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=24.4
Q ss_pred eEEE-EecCCCchhHHHHHHHHhcCCCcc
Q 024881 188 SIFL-VGDSTEVNEKVALELAVGLGYTPL 215 (261)
Q Consensus 188 sIyL-VGmmGsGKSTVGr~LA~~LgY~fv 215 (261)
+++| .|+.|+|||+.++.+|+.+|..++
T Consensus 44 ~~lll~G~~G~GKT~la~~l~~~~~~~~~ 72 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKALCNEVGAEVL 72 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCccce
Confidence 5666 799999999999999999987654
No 417
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=94.63 E-value=0.03 Score=49.55 Aligned_cols=30 Identities=10% Similarity=-0.038 Sum_probs=25.5
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
++-+|..+.|+|.+|+||||+.+.||..++
T Consensus 32 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 61 (264)
T PRK14243 32 DIPKNQITAFIGPSGCGKSTILRCFNRLND 61 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 444788899999999999999999996543
No 418
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.63 E-value=0.028 Score=49.84 Aligned_cols=29 Identities=14% Similarity=0.121 Sum_probs=24.8
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 26 ~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 26 ELKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578889999999999999999999653
No 419
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.62 E-value=0.031 Score=48.47 Aligned_cols=29 Identities=14% Similarity=-0.060 Sum_probs=25.0
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-.|..+.|+|.+|+||||+.+.||..+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 25 PIPARQVTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 44478889999999999999999999654
No 420
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=94.62 E-value=0.025 Score=52.60 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=25.3
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|||.+|+||||+++.|+..+
T Consensus 38 ~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 38 SLRAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 44567789999999999999999999776
No 421
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.62 E-value=0.029 Score=47.68 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=28.3
Q ss_pred HHHHHH-hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 176 LTAGSM-QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 176 l~~g~~-~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+...+. ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 16 TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 444444 55688899999999999999999999664
No 422
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=94.62 E-value=0.025 Score=49.67 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=25.7
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 26 NIHHGEMVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 44578889999999999999999999765
No 423
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=94.61 E-value=0.072 Score=45.53 Aligned_cols=53 Identities=25% Similarity=0.292 Sum_probs=37.0
Q ss_pred HHHHhhcC-----CceEEEEecCCCchhHHHHHHHHhc---CC--CccCcH----HHHHHHhCCCHH
Q 024881 178 AGSMQLLK-----GTSIFLVGDSTEVNEKVALELAVGL---GY--TPLSTK----ELLETFAKQTID 230 (261)
Q Consensus 178 ~g~~~lLk-----G~sIyLVGmmGsGKSTVGr~LA~~L---gY--~fvDTD----eLIEq~agkSI~ 230 (261)
.|+-++|. |.-+-+.|.+|+|||+++..+|... |+ -|+|++ +-+.+..+..++
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~ 76 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFE 76 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChH
Confidence 45556664 6678999999999999999999633 54 477887 445555544333
No 424
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=94.60 E-value=0.025 Score=56.61 Aligned_cols=29 Identities=17% Similarity=0.052 Sum_probs=24.9
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+.-+|..+.+||.+||||||+.+.|+..+
T Consensus 496 ~i~~G~~vaIvG~SGsGKSTLlklL~gl~ 524 (708)
T TIGR01193 496 TIKMNSKTTIVGMSGSGKSTLAKLLVGFF 524 (708)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44468889999999999999999998654
No 425
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.60 E-value=0.028 Score=49.97 Aligned_cols=29 Identities=10% Similarity=0.076 Sum_probs=24.7
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 29 TIEDGSYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34467789999999999999999999764
No 426
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.60 E-value=0.028 Score=49.95 Aligned_cols=29 Identities=21% Similarity=0.131 Sum_probs=25.1
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 35 DIPRGKVTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44578889999999999999999999764
No 427
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=94.55 E-value=0.027 Score=48.53 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=25.6
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 23 EVRPGEVHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 45578889999999999999999999874
No 428
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.55 E-value=0.029 Score=45.37 Aligned_cols=29 Identities=24% Similarity=0.209 Sum_probs=25.0
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.|+..+
T Consensus 21 ~i~~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 21 TLKAGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567789999999999999999999765
No 429
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.54 E-value=0.027 Score=50.26 Aligned_cols=29 Identities=21% Similarity=0.058 Sum_probs=25.4
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 34 ~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 34 HIPAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578889999999999999999999765
No 430
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.53 E-value=0.028 Score=48.41 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=24.5
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-.|..+.|+|.+|+||||+.+.||..+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 27 HINQGEIVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 44477789999999999999999998653
No 431
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.53 E-value=0.031 Score=49.12 Aligned_cols=29 Identities=21% Similarity=0.032 Sum_probs=25.0
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 34 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 34 QIPKNSVTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578889999999999999999999654
No 432
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.53 E-value=0.032 Score=47.79 Aligned_cols=29 Identities=17% Similarity=0.121 Sum_probs=25.5
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 23 TIPAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45588889999999999999999999654
No 433
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.53 E-value=0.032 Score=47.24 Aligned_cols=29 Identities=17% Similarity=0.091 Sum_probs=25.6
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
..-+|..+-|+|.+|+||||+.+.||..+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 22 TLAAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578889999999999999999999765
No 434
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.53 E-value=0.03 Score=49.98 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=25.0
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.|+..+
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 52 (275)
T PRK13639 24 KAEKGEMVALLGPNGAGKSTLFLHFNGIL 52 (275)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578889999999999999999998653
No 435
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.53 E-value=0.03 Score=49.69 Aligned_cols=27 Identities=19% Similarity=0.019 Sum_probs=24.0
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
-+|..+.|+|.+|+||||+.+.||..+
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999764
No 436
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=94.53 E-value=0.035 Score=48.65 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=22.5
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCC
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGY 212 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY 212 (261)
-..+||.+||||||+.+.|+-.||-
T Consensus 27 ~~~IvG~NGsGKStll~Ai~~ll~~ 51 (251)
T cd03273 27 FNAITGLNGSGKSNILDAICFVLGI 51 (251)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4779999999999999999988864
No 437
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=94.52 E-value=0.031 Score=48.48 Aligned_cols=29 Identities=14% Similarity=-0.005 Sum_probs=25.0
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-.|..+.|+|.+|+||||+.+.||..+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 25 DIEENQVTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34478889999999999999999999754
No 438
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=94.50 E-value=0.033 Score=49.60 Aligned_cols=29 Identities=10% Similarity=0.037 Sum_probs=25.6
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.+-+|..+.|+|.+|+||||+.+.||..+
T Consensus 46 ~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 46 DIHENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 44578889999999999999999999765
No 439
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.50 E-value=0.033 Score=46.91 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=25.2
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+.-+|..+.|+|.+|+||||+.+.||..+
T Consensus 27 ~i~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 27 EVPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 44578889999999999999999999863
No 440
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.025 Score=52.66 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=31.9
Q ss_pred HhhcCCceE--------EEEecCCCchhHHHHHHHHhcCCCccCcH
Q 024881 181 MQLLKGTSI--------FLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (261)
Q Consensus 181 ~~lLkG~sI--------yLVGmmGsGKSTVGr~LA~~LgY~fvDTD 218 (261)
.++|+|+|+ .|.|++||||||++..|+-.=+|....-+
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~ 62 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGE 62 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecce
Confidence 467888876 47899999999999999999999875543
No 441
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.47 E-value=0.034 Score=46.94 Aligned_cols=29 Identities=24% Similarity=0.236 Sum_probs=25.3
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 30 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 30 KVKAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 55678889999999999999999998653
No 442
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=94.46 E-value=0.033 Score=48.43 Aligned_cols=29 Identities=17% Similarity=0.111 Sum_probs=24.8
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 43 ~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 43 TIEKGEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 44467778999999999999999999754
No 443
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.46 E-value=0.032 Score=49.58 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=25.0
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 31 EINEGEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578889999999999999999998764
No 444
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=94.45 E-value=0.035 Score=49.19 Aligned_cols=28 Identities=14% Similarity=-0.057 Sum_probs=24.6
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-.|..+.|+|.+|+||||+.+.||..+
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 42 IPEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3467889999999999999999999765
No 445
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.43 E-value=0.037 Score=48.03 Aligned_cols=30 Identities=17% Similarity=0.045 Sum_probs=25.7
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
++-+|..+.|+|.+|+||||+.+.||..++
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (250)
T PRK14266 25 DIPKNSVTALIGPSGCGKSTFIRTLNRMND 54 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 344788899999999999999999997654
No 446
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.40 E-value=0.035 Score=47.36 Aligned_cols=29 Identities=14% Similarity=0.038 Sum_probs=25.1
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 22 TVPKNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578889999999999999999999764
No 447
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=94.40 E-value=0.034 Score=48.66 Aligned_cols=29 Identities=21% Similarity=0.107 Sum_probs=24.9
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (255)
T PRK11231 24 SLPTGKITALIGPNGCGKSTLLKCFARLL 52 (255)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 34477889999999999999999999754
No 448
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.39 E-value=0.029 Score=50.37 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=26.0
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 29 ~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~ 57 (282)
T PRK13640 29 SIPRGSWTALIGHNGSGKSTISKLINGLL 57 (282)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence 66678889999999999999999999765
No 449
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=94.38 E-value=0.031 Score=48.46 Aligned_cols=29 Identities=17% Similarity=0.109 Sum_probs=25.5
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 22 EVPTGSLVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56688889999999999999999999653
No 450
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=94.38 E-value=0.034 Score=49.12 Aligned_cols=29 Identities=21% Similarity=0.080 Sum_probs=25.2
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T TIGR02769 33 SIEEGETVGLLGRSGCGKSTLARLLLGLE 61 (265)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578889999999999999999999765
No 451
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.38 E-value=0.034 Score=49.42 Aligned_cols=28 Identities=11% Similarity=0.086 Sum_probs=24.5
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|..+.|+|.+|+||||+.+.||..+
T Consensus 47 i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 47 VREGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467789999999999999999999765
No 452
>PRK06893 DNA replication initiation factor; Validated
Probab=94.38 E-value=0.04 Score=48.22 Aligned_cols=33 Identities=3% Similarity=0.025 Sum_probs=26.5
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc-----CCCccCcH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTK 218 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L-----gY~fvDTD 218 (261)
...+||.|.+|+|||.+++.+|..+ +-.|++..
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 3458999999999999999999875 44566654
No 453
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.37 E-value=0.051 Score=47.83 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=24.2
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCC
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGY 212 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY 212 (261)
+.+|.++|.+||||||..+.|+..+..
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred ceEEEEECCCccccchHHHHHhhhccc
Confidence 678999999999999999999988743
No 454
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.37 E-value=0.034 Score=49.67 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=25.2
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.|+..+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (274)
T PRK13647 27 SIPEGSKTALLGPNGAGKSTLLLHLNGIY 55 (274)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45678889999999999999999999543
No 455
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.37 E-value=0.05 Score=54.71 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=29.6
Q ss_pred HHHHhhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 178 AGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 178 ~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
.-..-++.|.+|.|.|.+|+|||++++.||+.++
T Consensus 31 lll~aalag~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 31 LCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred HHHHHHccCCCEEEECCCChhHHHHHHHHHHHhc
Confidence 3445678899999999999999999999999864
No 456
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.36 E-value=0.029 Score=54.70 Aligned_cols=28 Identities=32% Similarity=0.207 Sum_probs=24.3
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.-+|..+.|||.+||||||+.+.|+..+
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467789999999999999999998764
No 457
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.36 E-value=0.035 Score=53.63 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=29.3
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc----CC---CccCcHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL----GY---TPLSTKEL 220 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L----gY---~fvDTDeL 220 (261)
+|..+.|||++|+||||+...||.++ |+ .++++|.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~ 178 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY 178 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 57889999999999999999999763 43 35667664
No 458
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=94.36 E-value=0.033 Score=48.73 Aligned_cols=29 Identities=21% Similarity=0.103 Sum_probs=25.2
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-.|..+.|+|.+|+||||+.+.||..+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (256)
T TIGR03873 23 TAPPGSLTGLLGPNGSGKSTLLRLLAGAL 51 (256)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 34568889999999999999999999764
No 459
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.35 E-value=0.035 Score=49.61 Aligned_cols=29 Identities=10% Similarity=-0.043 Sum_probs=24.9
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 42 ~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 42 KIPAKKIIAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44568889999999999999999999654
No 460
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=94.35 E-value=0.047 Score=43.44 Aligned_cols=30 Identities=13% Similarity=0.131 Sum_probs=24.7
Q ss_pred HHhhcCCceEEEEecCCCchhHHHHHHHHh
Q 024881 180 SMQLLKGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 180 ~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
.....+...|.++|.+|+||||+.+.|...
T Consensus 8 ~~~~~~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 8 LRKSSEEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred hhccCCccEEEEEccCCCCHHHHHHHHhcC
Confidence 334455678999999999999999999875
No 461
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=94.35 E-value=0.033 Score=54.09 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=24.5
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.=+|..+.+||.+||||||+.+.|+..+
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3467789999999999999999998865
No 462
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.33 E-value=0.04 Score=54.53 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=27.9
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc----C--CCccCcHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL----G--YTPLSTKE 219 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L----g--Y~fvDTDe 219 (261)
++..|.++|..|+||||++..||..+ | -.++|+|.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 35568999999999999999999754 3 33577776
No 463
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=94.33 E-value=0.026 Score=48.44 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=21.9
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
|.-+.|+|.||+||||+.+.|+-.|
T Consensus 28 ~~~~~i~G~NGsGKSTll~~i~~~l 52 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDAITYAL 52 (213)
T ss_pred cCEEEEECCCCCCHHHHHHHheeeE
Confidence 4568999999999999999998655
No 464
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=94.31 E-value=0.035 Score=50.95 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=25.5
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.|+-.+
T Consensus 29 ~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~ 57 (305)
T PRK13651 29 EINQGEFIAIIGQTGSGKTTFIEHLNALL 57 (305)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 55678889999999999999999999654
No 465
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=94.31 E-value=0.033 Score=55.66 Aligned_cols=29 Identities=21% Similarity=0.059 Sum_probs=24.8
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++=+|..+.+||.+||||||+.+.|+..+
T Consensus 475 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 475 QIEPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33467789999999999999999998765
No 466
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=94.30 E-value=0.032 Score=51.93 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=25.0
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|||.+|+||||+++.|+..+
T Consensus 43 ~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 43 RLYEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34467789999999999999999999765
No 467
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=94.30 E-value=0.036 Score=49.28 Aligned_cols=29 Identities=24% Similarity=0.138 Sum_probs=25.1
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 34 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 62 (268)
T PRK10419 34 SLKSGETVALLGRSGCGKSTLARLLVGLE 62 (268)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578889999999999999999999654
No 468
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.29 E-value=0.038 Score=47.66 Aligned_cols=29 Identities=17% Similarity=0.027 Sum_probs=25.7
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-.|..+.|+|.+|+||||+.+.||..+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 22 DIKEGEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578899999999999999999999765
No 469
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.27 E-value=0.037 Score=47.82 Aligned_cols=29 Identities=21% Similarity=0.165 Sum_probs=24.5
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 44 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 44 EVPRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33467789999999999999999999653
No 470
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.27 E-value=0.038 Score=48.96 Aligned_cols=29 Identities=17% Similarity=0.086 Sum_probs=25.1
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 31 ~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 31 NIPKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578889999999999999999998654
No 471
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.27 E-value=0.036 Score=46.45 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.4
Q ss_pred EEEEecCCCchhHHHHHHHHhc---CCCc
Q 024881 189 IFLVGDSTEVNEKVALELAVGL---GYTP 214 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~L---gY~f 214 (261)
|.++|++|+||||+...|+..| ||+.
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V 30 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRV 30 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 5789999999999999998876 6655
No 472
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=94.25 E-value=0.033 Score=50.15 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=25.7
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-.|..+.|+|.+|+||||+.+.||..+
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 23 RIEPGRVTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578889999999999999999999765
No 473
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=94.24 E-value=0.039 Score=48.93 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=25.1
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 35 ~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 35 TLREGQTLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34467789999999999999999999765
No 474
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=94.22 E-value=0.019 Score=56.95 Aligned_cols=60 Identities=18% Similarity=0.175 Sum_probs=42.3
Q ss_pred hhHHHHHHHhhcC-CceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHH
Q 024881 173 WESLTAGSMQLLK-GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWML 234 (261)
Q Consensus 173 We~l~~g~~~lLk-G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFa 234 (261)
.+.+..++.-... |.++.|+|.+|+|||++++.++..| ++.+.++.+|.....++.-.+.
T Consensus 197 q~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~ll--p~~~~~~~le~~~i~s~~g~~~ 257 (499)
T TIGR00368 197 QQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGIL--PPLTNEEAIETARIWSLVGKLI 257 (499)
T ss_pred cHHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhccc--CCCCCcEEEeccccccchhhhc
Confidence 4555666665554 4789999999999999999999876 5556666666555555544443
No 475
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]
Probab=94.20 E-value=0.011 Score=59.92 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=30.3
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTD 218 (261)
.++|++||.++||+|+|+..|++|+|.++|.|
T Consensus 564 ssm~vigmr~agkttigk~~akeL~~kimdld 595 (595)
T KOG0692|consen 564 SSMFVIGMREAGKTTIGKPAAKELYWKIMDLD 595 (595)
T ss_pred ceeeeehhhhcCceecCccchHHhCeeeeccC
Confidence 47999999999999999999999999999975
No 476
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=94.20 E-value=0.039 Score=50.02 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=24.9
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 26 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 26 TIARGECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34467789999999999999999999754
No 477
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.20 E-value=0.04 Score=48.56 Aligned_cols=28 Identities=11% Similarity=-0.081 Sum_probs=24.5
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|..+.|+|.+|+||||+.+.||..+
T Consensus 39 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 66 (265)
T PRK14252 39 VHEKQVTALIGPSGCGKSTFLRCFNRMH 66 (265)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 3468889999999999999999999655
No 478
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=94.19 E-value=0.039 Score=48.66 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=25.3
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 24 TLRPGEVVAILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578889999999999999999999764
No 479
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.19 E-value=0.022 Score=53.41 Aligned_cols=33 Identities=12% Similarity=0.078 Sum_probs=25.8
Q ss_pred EEEEecCCCchhHHHHHHHHhcC---C--CccCcHHHH
Q 024881 189 IFLVGDSTEVNEKVALELAVGLG---Y--TPLSTKELL 221 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~Lg---Y--~fvDTDeLI 221 (261)
|-+.|.+|||||||++.|++.|+ . .+++.|.+=
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yy 39 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFH 39 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccc
Confidence 56899999999999999998764 2 456666543
No 480
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.18 E-value=0.043 Score=51.74 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=34.5
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc---CCC--ccCcHHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKELLETFA 225 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTDeLIEq~a 225 (261)
.+.++||.|..|+|||.++..+|..+ ||. |+++++++++..
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~ 227 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILR 227 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHH
Confidence 35789999999999999999999987 553 678888888774
No 481
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.17 E-value=0.041 Score=44.83 Aligned_cols=29 Identities=24% Similarity=0.192 Sum_probs=24.6
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-.|..+.|+|.+|+||||+.+.|+..+
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34467788999999999999999998764
No 482
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.17 E-value=0.04 Score=49.53 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=24.2
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.|+..+
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~ 57 (286)
T PRK13646 29 EFEQGKYYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34467779999999999999999998553
No 483
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.15 E-value=0.039 Score=48.02 Aligned_cols=29 Identities=10% Similarity=-0.027 Sum_probs=26.0
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-.|..+.|+|.+|+||||+.+.||..+
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14249 26 DFPERQITAIIGPSGCGKSTLLRALNRMN 54 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45678889999999999999999999876
No 484
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=94.14 E-value=0.036 Score=50.18 Aligned_cols=29 Identities=14% Similarity=0.115 Sum_probs=24.8
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.|+..+
T Consensus 15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 15 KVREGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34467788999999999999999999765
No 485
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=94.11 E-value=0.043 Score=48.80 Aligned_cols=28 Identities=11% Similarity=-0.051 Sum_probs=24.5
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|..+.|+|.+|+||||+.+.||..+
T Consensus 48 i~~Ge~~~I~G~nGsGKSTLl~~laGl~ 75 (272)
T PRK14236 48 IPKNRVTAFIGPSGCGKSTLLRCFNRMN 75 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468889999999999999999999664
No 486
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=94.10 E-value=0.041 Score=51.22 Aligned_cols=29 Identities=10% Similarity=0.058 Sum_probs=24.8
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+||||||+.+.||..+
T Consensus 27 ~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~ 55 (343)
T PRK11153 27 HIPAGEIFGVIGASGAGKSTLIRCINLLE 55 (343)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33467779999999999999999999765
No 487
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=94.10 E-value=0.04 Score=53.34 Aligned_cols=29 Identities=21% Similarity=0.125 Sum_probs=25.3
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+.-+|..+.+||.+|+||||+.+.|+..+
T Consensus 362 ~i~~Ge~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 362 TVRPGETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 44577789999999999999999998765
No 488
>PRK13974 thymidylate kinase; Provisional
Probab=94.10 E-value=0.047 Score=47.15 Aligned_cols=27 Identities=26% Similarity=0.075 Sum_probs=25.1
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
.|.-|.|.|..||||||..+.|++.|.
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~ 28 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLP 28 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688899999999999999999999883
No 489
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=94.10 E-value=0.038 Score=48.49 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=24.5
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 18 ~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~ 46 (248)
T PRK03695 18 EVRAGEILHLVGPNGAGKSTLLARMAGLL 46 (248)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34567789999999999999999998643
No 490
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.09 E-value=0.062 Score=46.45 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=29.3
Q ss_pred HHHHHhhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 177 TAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 177 ~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+.-+++.|+|..+.|+|.+|+||||+...|....
T Consensus 26 ~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 26 IEELKELLKGKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHHTTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4567889999999999999999999998886653
No 491
>PRK13409 putative ATPase RIL; Provisional
Probab=94.09 E-value=0.074 Score=53.48 Aligned_cols=56 Identities=16% Similarity=0.090 Sum_probs=40.3
Q ss_pred HHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCC------CccCcHHHHHHHhCCCHHHHH
Q 024881 178 AGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGY------TPLSTKELLETFAKQTIDSWM 233 (261)
Q Consensus 178 ~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY------~fvDTDeLIEq~agkSI~eIF 233 (261)
.++...=+|.-+-|||.+|+||||+.+.||-.+-- ...+.|+++..+.|+.+...+
T Consensus 91 ~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~ 152 (590)
T PRK13409 91 YGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYF 152 (590)
T ss_pred ecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHH
Confidence 34444457888999999999999999999987531 233456666666676666554
No 492
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.07 E-value=0.066 Score=52.48 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=22.6
Q ss_pred CCceEEEEecCCCchhHHHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
+|..|.|||.+|+||||+.+.||.+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5667999999999999999999975
No 493
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.06 E-value=0.049 Score=54.50 Aligned_cols=53 Identities=15% Similarity=0.173 Sum_probs=40.9
Q ss_pred EecCCCCCCcccccchhHHHHHHHhhcC-Cc--e-EEEEecCCCchhHHHHHHHHhcCC
Q 024881 158 KKQDPELKWPDIVESWESLTAGSMQLLK-GT--S-IFLVGDSTEVNEKVALELAVGLGY 212 (261)
Q Consensus 158 ~K~d~~m~Wp~~~e~We~l~~g~~~lLk-G~--s-IyLVGmmGsGKSTVGr~LA~~LgY 212 (261)
+|+-+ |.|.||+- .+.+++-+.+.+. |. + +.|.|+.|+||||+++.||+.|+-
T Consensus 8 ~kyRP-~~~~eiiG-q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 8 RKWRS-QTFAELVG-QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred HHhCC-CCHHHhcC-CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 56777 88877763 6777777776555 32 3 468999999999999999999963
No 494
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.05 E-value=0.043 Score=49.32 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=24.9
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||-.+
T Consensus 46 ~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 46 KAYEGDVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34467789999999999999999999764
No 495
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.03 E-value=0.042 Score=53.55 Aligned_cols=30 Identities=17% Similarity=0.086 Sum_probs=26.9
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCC
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGY 212 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY 212 (261)
+-+|..+-+||.+||||||+.+.|+..+..
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~ 381 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYDP 381 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 557888999999999999999999988766
No 496
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.03 E-value=0.045 Score=49.07 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=24.8
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.|+..+
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (279)
T PRK13650 29 HVKQGEWLSIIGHNGSGKSTTVRLIDGLL 57 (279)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44577789999999999999999998654
No 497
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=94.02 E-value=0.055 Score=43.29 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=22.2
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcC
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
+||.|||..|+||||+...|...-|
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~ 25 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTG 25 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhC
Confidence 5899999999999999999987543
No 498
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.02 E-value=0.045 Score=49.25 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=24.5
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 29 ~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~ 57 (287)
T PRK13641 29 ELEEGSFVALVGHTGSGKSTLMQHFNALL 57 (287)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44577889999999999999999998543
No 499
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=94.01 E-value=0.051 Score=53.97 Aligned_cols=46 Identities=26% Similarity=0.450 Sum_probs=39.7
Q ss_pred hhHHHHHHH-----hhcCCceEEEEecCCCchhHHHHHHH--------HhcCCCccCcH
Q 024881 173 WESLTAGSM-----QLLKGTSIFLVGDSTEVNEKVALELA--------VGLGYTPLSTK 218 (261)
Q Consensus 173 We~l~~g~~-----~lLkG~sIyLVGmmGsGKSTVGr~LA--------~~LgY~fvDTD 218 (261)
|.++...+. +...+.+|++.|..|+||||+...|- .+|+|.|+|..
T Consensus 7 W~siL~ev~~~~~~~~~~~k~vlvlG~~~~GKttli~~L~~~e~~~~~~aLeYty~~v~ 65 (472)
T PF05783_consen 7 WSSILSEVSNSSSTKLPSEKSVLVLGDKGSGKTTLIARLQGIEDPKKGLALEYTYLDVK 65 (472)
T ss_pred HHHHHHHHHhhccccCCCCceEEEEeCCCCchHHHHHHhhccCCCCCCcccceEEEeec
Confidence 999999885 56788999999999999999988775 46999999854
No 500
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=94.01 E-value=0.049 Score=40.51 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=20.4
Q ss_pred ceEEEEecCCCchhHHHHHHHHhc
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.+|.++|+.|+||||+...|...-
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999988887543
Done!