Query 024881
Match_columns 261
No_of_seqs 102 out of 108
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 16:02:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024881.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024881hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qor_A Nuclear migration prote 99.9 2.5E-23 8.4E-28 165.9 9.9 94 75-179 13-107 (121)
2 1wfi_A Nuclear distribution ge 99.9 7.5E-22 2.6E-26 158.1 9.5 93 76-179 5-98 (131)
3 2rh0_A NUDC domain-containing 99.8 8.1E-21 2.8E-25 158.2 8.3 95 74-181 9-105 (157)
4 1wgv_A KIAA1068 protein; CS do 99.8 3.7E-20 1.3E-24 147.3 9.0 93 76-179 17-111 (124)
5 2o30_A Nuclear movement protei 99.8 3.3E-20 1.1E-24 149.1 6.8 89 77-180 3-91 (131)
6 3trf_A Shikimate kinase, SK; a 99.7 2.3E-18 7.8E-23 136.9 7.5 72 186-257 5-76 (185)
7 3vaa_A Shikimate kinase, SK; s 99.7 4E-18 1.4E-22 139.2 7.4 86 172-257 10-96 (199)
8 3nwj_A ATSK2; P loop, shikimat 99.7 4.4E-18 1.5E-22 149.0 7.2 77 179-255 41-118 (250)
9 1x5m_A Calcyclin-binding prote 99.7 4.5E-17 1.5E-21 130.0 11.8 98 77-181 19-116 (127)
10 1zuh_A Shikimate kinase; alpha 99.7 1.2E-17 4E-22 131.8 8.2 71 187-257 8-78 (168)
11 1via_A Shikimate kinase; struc 99.7 1.2E-16 4.1E-21 127.0 7.4 69 188-256 6-74 (175)
12 2xcm_C SGT1-like protein, cyto 99.6 8E-16 2.7E-20 114.0 8.9 87 79-177 3-89 (92)
13 2iyv_A Shikimate kinase, SK; t 99.6 3.9E-16 1.3E-20 124.3 7.7 71 186-256 2-72 (184)
14 1kag_A SKI, shikimate kinase I 99.6 9.5E-16 3.2E-20 120.3 7.1 73 185-257 3-75 (173)
15 1rl1_A Suppressor of G2 allele 99.6 2.7E-15 9.1E-20 116.1 8.7 91 77-179 8-98 (114)
16 2pt5_A Shikimate kinase, SK; a 99.6 2.5E-15 8.6E-20 117.3 7.8 70 187-256 1-70 (168)
17 1e6c_A Shikimate kinase; phosp 99.6 3.3E-15 1.1E-19 116.8 6.6 67 187-253 3-69 (173)
18 1ejf_A Progesterone receptor P 99.5 3E-14 1E-18 113.6 7.4 87 80-179 5-92 (125)
19 1wh0_A Ubiquitin carboxyl-term 99.4 3.8E-13 1.3E-17 110.0 9.2 88 76-168 17-117 (134)
20 3cm0_A Adenylate kinase; ATP-b 99.4 1E-13 3.5E-18 109.8 4.8 69 184-253 2-76 (186)
21 1qhx_A CPT, protein (chloramph 99.4 8.4E-14 2.9E-18 109.6 2.4 65 185-249 2-76 (178)
22 3be4_A Adenylate kinase; malar 99.4 3.7E-13 1.3E-17 111.4 5.4 69 184-253 3-77 (217)
23 3fdi_A Uncharacterized protein 99.4 5.9E-13 2E-17 111.6 6.6 75 184-259 4-102 (201)
24 2ga8_A Hypothetical 39.9 kDa p 99.4 2E-14 6.9E-19 134.2 -3.3 75 176-251 11-108 (359)
25 2c95_A Adenylate kinase 1; tra 99.3 7.8E-13 2.7E-17 104.9 5.4 68 184-252 7-80 (196)
26 2cg9_X CO-chaperone protein SB 99.3 5E-13 1.7E-17 108.4 4.0 90 78-179 6-109 (134)
27 1aky_A Adenylate kinase; ATP:A 99.3 7.9E-13 2.7E-17 108.8 5.2 69 185-254 3-77 (220)
28 2grj_A Dephospho-COA kinase; T 99.3 9.8E-13 3.3E-17 110.5 4.5 56 187-242 13-68 (192)
29 2bwj_A Adenylate kinase 5; pho 99.3 2.7E-12 9.2E-17 102.1 5.7 66 185-251 11-82 (199)
30 1y63_A LMAJ004144AAA protein; 99.3 7E-13 2.4E-17 107.2 2.2 69 181-252 5-76 (184)
31 2cdn_A Adenylate kinase; phosp 99.3 3.3E-12 1.1E-16 103.5 5.1 74 179-253 13-92 (201)
32 1tev_A UMP-CMP kinase; ploop, 99.3 3.7E-12 1.3E-16 100.1 4.7 67 184-251 1-74 (196)
33 1zd8_A GTP:AMP phosphotransfer 99.2 6.3E-12 2.2E-16 104.2 4.8 66 184-250 5-76 (227)
34 1ak2_A Adenylate kinase isoenz 99.2 7.2E-12 2.4E-16 104.8 5.1 71 182-253 12-88 (233)
35 1zak_A Adenylate kinase; ATP:A 99.2 8.7E-12 3E-16 102.7 5.3 59 185-244 4-68 (222)
36 1qf9_A UMP/CMP kinase, protein 99.2 7.4E-12 2.5E-16 98.2 4.6 67 186-253 6-78 (194)
37 1vht_A Dephospho-COA kinase; s 99.2 1.2E-11 4.3E-16 101.3 4.8 58 185-243 3-63 (218)
38 2rhm_A Putative kinase; P-loop 99.2 1.8E-11 6.1E-16 96.9 5.4 59 185-248 4-62 (193)
39 3iij_A Coilin-interacting nucl 99.2 4.1E-12 1.4E-16 101.0 1.6 65 182-252 7-73 (180)
40 2h92_A Cytidylate kinase; ross 99.2 7.8E-12 2.7E-16 102.0 3.1 67 184-250 1-92 (219)
41 2if2_A Dephospho-COA kinase; a 99.2 9.9E-12 3.4E-16 100.3 3.2 63 188-251 3-71 (204)
42 1uf9_A TT1252 protein; P-loop, 99.2 1.8E-11 6.1E-16 97.6 4.6 61 186-249 8-71 (203)
43 3lw7_A Adenylate kinase relate 99.1 3.4E-11 1.2E-15 91.8 5.2 63 187-250 2-74 (179)
44 1jjv_A Dephospho-COA kinase; P 99.1 2.1E-11 7E-16 98.9 3.8 56 187-243 3-61 (206)
45 2vli_A Antibiotic resistance p 99.1 2.3E-11 7.8E-16 95.8 2.6 55 185-245 4-59 (183)
46 1ukz_A Uridylate kinase; trans 99.1 1.9E-10 6.3E-15 92.8 6.9 66 186-252 15-87 (203)
47 1knq_A Gluconate kinase; ALFA/ 99.1 8.8E-11 3E-15 92.6 4.4 65 184-251 6-76 (175)
48 3ake_A Cytidylate kinase; CMP 99.0 5.5E-11 1.9E-15 95.1 1.8 63 188-251 4-95 (208)
49 1kht_A Adenylate kinase; phosp 99.0 1.6E-10 5.4E-15 90.8 4.3 63 185-248 2-74 (192)
50 2xb4_A Adenylate kinase; ATP-b 99.0 1.6E-10 5.5E-15 96.4 4.6 66 187-253 1-72 (223)
51 1ly1_A Polynucleotide kinase; 99.0 1.5E-10 5E-15 90.2 3.4 67 187-253 3-72 (181)
52 1e4v_A Adenylate kinase; trans 99.0 3.7E-10 1.3E-14 92.8 5.8 64 187-251 1-70 (214)
53 2axn_A 6-phosphofructo-2-kinas 99.0 2.4E-10 8.3E-15 109.1 5.2 66 187-252 36-107 (520)
54 1bif_A 6-phosphofructo-2-kinas 99.0 1.5E-10 5.2E-15 107.5 3.6 68 185-252 38-111 (469)
55 4i1u_A Dephospho-COA kinase; s 99.0 4.6E-10 1.6E-14 97.3 5.5 64 188-252 11-80 (210)
56 2p5t_B PEZT; postsegregational 99.0 3.4E-10 1.2E-14 96.4 4.5 78 173-254 19-107 (253)
57 3a4m_A L-seryl-tRNA(SEC) kinas 99.0 3.5E-10 1.2E-14 96.9 4.4 64 185-254 3-71 (260)
58 2v54_A DTMP kinase, thymidylat 98.9 7.6E-11 2.6E-15 94.3 -0.3 54 184-237 2-57 (204)
59 3a8t_A Adenylate isopentenyltr 98.9 8.9E-11 3E-15 108.8 -0.2 73 185-257 39-131 (339)
60 3kb2_A SPBC2 prophage-derived 98.9 4.5E-10 1.5E-14 86.8 3.7 45 188-234 3-47 (173)
61 1q3t_A Cytidylate kinase; nucl 98.9 5.4E-10 1.9E-14 93.5 4.2 42 183-224 13-54 (236)
62 3hdt_A Putative kinase; struct 98.9 1.3E-09 4.6E-14 93.9 6.3 72 187-258 15-118 (223)
63 3fb4_A Adenylate kinase; psych 98.9 9.7E-10 3.3E-14 89.4 5.0 65 187-252 1-71 (216)
64 3dl0_A Adenylate kinase; phosp 98.9 1.2E-09 4E-14 89.2 5.0 64 187-251 1-70 (216)
65 2kmw_A Uncharacterized protein 98.9 7.9E-09 2.7E-13 85.6 9.4 82 78-167 4-86 (150)
66 4eun_A Thermoresistant glucoki 98.8 2.2E-09 7.7E-14 87.5 5.0 71 181-254 24-100 (200)
67 2pbr_A DTMP kinase, thymidylat 98.8 8.8E-10 3E-14 86.7 0.1 52 188-240 2-56 (195)
68 4e22_A Cytidylate kinase; P-lo 98.7 8.1E-09 2.8E-13 88.3 4.6 46 184-229 25-76 (252)
69 2pez_A Bifunctional 3'-phospho 98.7 2.6E-09 9E-14 84.9 1.3 62 184-246 3-68 (179)
70 3t61_A Gluconokinase; PSI-biol 98.7 1.6E-09 5.6E-14 87.7 0.0 36 186-221 18-53 (202)
71 1cke_A CK, MSSA, protein (cyti 98.7 9.6E-09 3.3E-13 83.6 4.5 45 186-230 5-55 (227)
72 1uj2_A Uridine-cytidine kinase 98.7 1.6E-09 5.5E-14 91.7 -0.5 65 187-253 23-104 (252)
73 2wwf_A Thymidilate kinase, put 98.7 1.7E-08 6E-13 81.0 5.5 35 184-218 8-42 (212)
74 1zp6_A Hypothetical protein AT 98.7 3.4E-09 1.2E-13 84.1 1.2 56 181-236 4-61 (191)
75 1nks_A Adenylate kinase; therm 98.7 1.1E-08 3.9E-13 80.0 4.0 38 188-225 3-45 (194)
76 3crm_A TRNA delta(2)-isopenten 98.7 3E-09 1E-13 97.6 0.1 70 187-257 6-95 (323)
77 2ze6_A Isopentenyl transferase 98.6 4.9E-09 1.7E-13 90.1 1.0 66 188-254 3-88 (253)
78 1x6v_B Bifunctional 3'-phospho 98.6 8.4E-09 2.9E-13 102.1 2.4 105 133-252 5-120 (630)
79 3tlx_A Adenylate kinase 2; str 98.6 2.4E-08 8.3E-13 84.9 4.8 51 185-235 28-84 (243)
80 2f6r_A COA synthase, bifunctio 98.6 5.9E-08 2E-12 84.7 5.9 38 187-225 76-113 (281)
81 1m7g_A Adenylylsulfate kinase; 98.6 1E-08 3.5E-13 84.2 0.7 65 181-247 20-90 (211)
82 1gvn_B Zeta; postsegregational 98.5 7.6E-08 2.6E-12 84.6 5.7 79 173-253 20-107 (287)
83 1nn5_A Similar to deoxythymidy 98.5 6.5E-09 2.2E-13 83.4 -1.4 52 184-235 7-62 (215)
84 3uie_A Adenylyl-sulfate kinase 98.5 6.5E-08 2.2E-12 78.8 3.7 39 184-222 23-66 (200)
85 1ltq_A Polynucleotide kinase; 98.5 6.5E-08 2.2E-12 82.6 3.9 40 187-226 3-43 (301)
86 3gmt_A Adenylate kinase; ssgci 98.5 9.5E-08 3.2E-12 84.0 5.0 66 187-253 9-80 (230)
87 2bbw_A Adenylate kinase 4, AK4 98.5 1.3E-07 4.5E-12 79.3 5.3 39 185-223 26-64 (246)
88 2yvu_A Probable adenylyl-sulfa 98.5 3.7E-08 1.3E-12 78.7 1.4 40 184-223 11-55 (186)
89 2plr_A DTMP kinase, probable t 98.4 7.8E-08 2.7E-12 76.5 2.9 49 184-236 2-52 (213)
90 2jaq_A Deoxyguanosine kinase; 98.4 1.2E-07 4E-12 75.1 3.7 30 187-216 1-30 (205)
91 2qor_A Guanylate kinase; phosp 98.4 3.3E-08 1.1E-12 80.8 0.4 44 183-226 9-75 (204)
92 3cr8_A Sulfate adenylyltranfer 98.4 1.1E-07 3.8E-12 92.2 4.1 41 183-223 366-412 (552)
93 1g8f_A Sulfate adenylyltransfe 98.4 1.3E-07 4.4E-12 91.4 4.0 46 174-219 378-435 (511)
94 3zvl_A Bifunctional polynucleo 98.4 1.9E-07 6.6E-12 86.0 4.2 35 186-220 258-292 (416)
95 3r20_A Cytidylate kinase; stru 98.3 1.4E-07 4.7E-12 82.5 2.6 41 185-225 8-48 (233)
96 2bdt_A BH3686; alpha-beta prot 98.3 1.8E-07 6E-12 74.8 2.6 40 186-225 2-42 (189)
97 1m8p_A Sulfate adenylyltransfe 98.3 4E-07 1.4E-11 88.3 4.7 62 175-247 380-452 (573)
98 2z0h_A DTMP kinase, thymidylat 98.2 1.1E-07 3.8E-12 75.3 -0.6 47 188-234 2-51 (197)
99 2gks_A Bifunctional SAT/APS ki 98.1 1.1E-06 3.7E-11 84.8 3.7 62 175-247 356-427 (546)
100 2qt1_A Nicotinamide riboside k 98.1 4.6E-07 1.6E-11 73.5 0.6 40 183-222 18-58 (207)
101 3sr0_A Adenylate kinase; phosp 98.1 1.8E-06 6.2E-11 73.2 4.1 38 187-224 1-38 (206)
102 3umf_A Adenylate kinase; rossm 98.1 3.3E-06 1.1E-10 72.8 4.8 43 183-225 26-68 (217)
103 3d3q_A TRNA delta(2)-isopenten 98.0 4.9E-07 1.7E-11 83.6 -0.4 70 187-256 8-96 (340)
104 1g41_A Heat shock protein HSLU 97.9 3.6E-06 1.2E-10 80.2 2.4 70 184-253 48-136 (444)
105 1dek_A Deoxynucleoside monopho 97.8 1.4E-05 4.9E-10 70.0 4.8 30 188-217 3-32 (241)
106 3asz_A Uridine kinase; cytidin 97.8 7.3E-06 2.5E-10 66.2 2.5 47 184-230 4-52 (211)
107 3tau_A Guanylate kinase, GMP k 97.7 3E-05 1E-09 63.9 4.6 41 185-225 7-70 (208)
108 2j41_A Guanylate kinase; GMP, 97.7 2.1E-05 7.3E-10 62.5 3.3 29 182-210 2-30 (207)
109 1kgd_A CASK, peripheral plasma 97.6 4.5E-05 1.6E-09 61.3 4.9 27 184-210 3-29 (180)
110 3cf0_A Transitional endoplasmi 97.6 7.6E-05 2.6E-09 64.9 6.2 51 185-235 48-103 (301)
111 1lv7_A FTSH; alpha/beta domain 97.6 2.2E-05 7.4E-10 65.7 2.3 32 186-217 45-76 (257)
112 3ec2_A DNA replication protein 97.5 5.7E-05 1.9E-09 59.9 3.8 41 185-225 37-83 (180)
113 1p5z_B DCK, deoxycytidine kina 97.5 3.8E-05 1.3E-09 65.1 2.8 55 184-238 22-93 (263)
114 3hws_A ATP-dependent CLP prote 97.4 8.2E-05 2.8E-09 65.9 4.2 34 185-218 50-83 (363)
115 1a7j_A Phosphoribulokinase; tr 97.4 3E-05 1E-09 68.4 0.5 37 185-221 4-45 (290)
116 2jeo_A Uridine-cytidine kinase 97.4 9.9E-05 3.4E-09 62.1 3.5 39 182-220 21-69 (245)
117 3b9p_A CG5977-PA, isoform A; A 97.3 0.00019 6.4E-09 60.8 5.0 31 186-216 54-84 (297)
118 1um8_A ATP-dependent CLP prote 97.3 0.00015 5E-09 64.4 4.2 34 185-218 71-104 (376)
119 4eaq_A DTMP kinase, thymidylat 97.3 3.2E-05 1.1E-09 65.7 -0.4 36 183-218 23-60 (229)
120 2ocp_A DGK, deoxyguanosine kin 97.3 0.00014 4.8E-09 60.6 3.6 29 185-213 1-30 (241)
121 2r62_A Cell division protease 97.3 0.00012 4E-09 61.2 3.0 32 186-217 44-75 (268)
122 3lnc_A Guanylate kinase, GMP k 97.3 0.00017 5.9E-09 59.6 3.7 29 182-210 23-52 (231)
123 3ney_A 55 kDa erythrocyte memb 97.3 0.00027 9.4E-09 60.3 5.0 72 181-253 14-126 (197)
124 3n70_A Transport activator; si 97.2 0.00027 9.1E-09 55.1 4.5 45 171-215 8-56 (145)
125 3h4m_A Proteasome-activating n 97.2 0.00028 9.5E-09 59.3 4.8 32 185-216 50-81 (285)
126 3eie_A Vacuolar protein sortin 97.2 0.00042 1.5E-08 60.6 6.1 61 163-224 14-91 (322)
127 3tr0_A Guanylate kinase, GMP k 97.2 0.0002 6.8E-09 57.0 3.6 27 184-210 5-31 (205)
128 1jbk_A CLPB protein; beta barr 97.2 0.00028 9.7E-09 53.5 4.1 25 186-210 43-67 (195)
129 1ofh_A ATP-dependent HSL prote 97.2 0.00025 8.7E-09 59.4 4.1 32 184-215 48-79 (310)
130 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.00022 7.5E-09 58.7 3.4 31 186-216 39-69 (262)
131 3vfd_A Spastin; ATPase, microt 97.1 0.00032 1.1E-08 62.9 4.5 53 164-217 112-179 (389)
132 1lvg_A Guanylate kinase, GMP k 97.1 0.0003 1E-08 57.7 4.0 26 185-210 3-28 (198)
133 2w58_A DNAI, primosome compone 97.1 0.00064 2.2E-08 54.4 5.6 39 187-225 55-98 (202)
134 2p65_A Hypothetical protein PF 97.1 0.00029 9.8E-09 53.9 3.4 25 186-210 43-67 (187)
135 3gla_A Low molecular weight he 97.1 0.0059 2E-07 45.7 10.4 77 79-161 5-98 (100)
136 4fei_A Heat shock protein-rela 97.1 0.0049 1.7E-07 46.8 10.1 79 78-162 6-96 (102)
137 3t15_A Ribulose bisphosphate c 97.1 0.00034 1.2E-08 61.0 3.9 31 187-217 37-67 (293)
138 2kjq_A DNAA-related protein; s 97.1 0.0003 1E-08 56.2 3.2 44 176-220 27-75 (149)
139 1d2n_A N-ethylmaleimide-sensit 97.1 0.00028 9.7E-09 59.5 3.2 32 186-217 64-95 (272)
140 3bos_A Putative DNA replicatio 97.0 0.0007 2.4E-08 54.0 5.1 46 176-221 39-92 (242)
141 1hqc_A RUVB; extended AAA-ATPa 97.0 0.00059 2E-08 58.0 4.9 30 186-215 38-67 (324)
142 3syl_A Protein CBBX; photosynt 97.0 9.4E-05 3.2E-09 62.7 -0.2 40 185-224 66-114 (309)
143 3d8b_A Fidgetin-like protein 1 97.0 0.00055 1.9E-08 61.2 4.6 31 186-216 117-147 (357)
144 2r44_A Uncharacterized protein 97.0 0.00049 1.7E-08 59.5 4.0 34 182-215 42-75 (331)
145 4gp7_A Metallophosphoesterase; 97.0 0.00067 2.3E-08 54.3 4.3 36 184-221 7-42 (171)
146 3a00_A Guanylate kinase, GMP k 97.0 0.00061 2.1E-08 54.8 4.1 25 186-210 1-25 (186)
147 1sq5_A Pantothenate kinase; P- 96.9 0.00055 1.9E-08 60.2 3.8 35 185-219 79-120 (308)
148 3c8u_A Fructokinase; YP_612366 96.9 0.00054 1.8E-08 56.0 3.3 27 185-211 21-47 (208)
149 3pfi_A Holliday junction ATP-d 96.9 0.00057 1.9E-08 59.0 3.5 59 158-217 21-86 (338)
150 1rz3_A Hypothetical protein rb 96.8 0.00058 2E-08 55.7 3.1 36 185-220 21-61 (201)
151 1gtv_A TMK, thymidylate kinase 96.8 0.00032 1.1E-08 56.2 1.2 24 188-211 2-25 (214)
152 3exa_A TRNA delta(2)-isopenten 96.8 0.00046 1.6E-08 63.9 2.2 36 185-220 2-37 (322)
153 2qby_A CDC6 homolog 1, cell di 96.7 0.0011 3.8E-08 56.5 4.3 32 186-217 45-82 (386)
154 1sxj_A Activator 1 95 kDa subu 96.7 0.00098 3.4E-08 62.6 4.2 31 187-217 78-108 (516)
155 2x8a_A Nuclear valosin-contain 96.7 0.00066 2.3E-08 59.0 2.8 28 189-216 47-74 (274)
156 3co5_A Putative two-component 96.7 0.00058 2E-08 53.2 2.0 52 170-221 10-63 (143)
157 1ixz_A ATP-dependent metallopr 96.7 0.00085 2.9E-08 55.9 3.1 29 188-216 51-79 (254)
158 1njg_A DNA polymerase III subu 96.7 0.0014 4.7E-08 51.1 3.9 25 188-212 47-71 (250)
159 4fcw_A Chaperone protein CLPB; 96.6 0.001 3.5E-08 56.2 3.4 40 171-210 24-71 (311)
160 1znw_A Guanylate kinase, GMP k 96.6 0.0012 4.1E-08 53.9 3.6 30 181-210 15-44 (207)
161 1l8q_A Chromosomal replication 96.6 0.001 3.5E-08 57.5 3.2 37 186-222 37-78 (324)
162 1in4_A RUVB, holliday junction 96.6 0.0013 4.3E-08 58.2 3.6 28 187-214 52-79 (334)
163 3v9p_A DTMP kinase, thymidylat 96.6 0.00059 2E-08 59.0 1.4 30 181-210 20-49 (227)
164 2zan_A Vacuolar protein sortin 96.5 0.0017 5.7E-08 60.2 4.2 49 186-234 167-221 (444)
165 2v1u_A Cell division control p 96.5 0.0014 4.7E-08 56.1 3.4 26 185-210 43-68 (387)
166 1sxj_D Activator 1 41 kDa subu 96.5 0.0014 4.9E-08 55.9 3.5 51 159-211 30-83 (353)
167 1htw_A HI0065; nucleotide-bind 96.5 0.0016 5.4E-08 53.0 3.5 27 184-210 31-57 (158)
168 2vp4_A Deoxynucleoside kinase; 96.5 0.00094 3.2E-08 55.7 2.2 30 184-214 18-47 (230)
169 2qp9_X Vacuolar protein sortin 96.5 0.0012 4E-08 59.3 2.9 38 186-223 84-123 (355)
170 1iy2_A ATP-dependent metallopr 96.5 0.0013 4.6E-08 55.8 3.1 30 188-217 75-104 (278)
171 1ye8_A Protein THEP1, hypothet 96.5 0.0014 4.8E-08 53.8 3.0 27 187-213 1-27 (178)
172 3uk6_A RUVB-like 2; hexameric 96.5 0.0017 5.9E-08 56.3 3.6 27 186-212 70-96 (368)
173 2chg_A Replication factor C sm 96.4 0.0023 8E-08 49.5 3.9 24 187-210 39-62 (226)
174 3pxg_A Negative regulator of g 96.4 0.0041 1.4E-07 58.0 6.3 44 176-219 188-244 (468)
175 2qby_B CDC6 homolog 3, cell di 96.4 0.0023 8E-08 55.3 4.3 32 186-217 45-87 (384)
176 1z6g_A Guanylate kinase; struc 96.4 0.0017 6E-08 54.1 3.3 29 182-210 19-47 (218)
177 3aab_A Putative uncharacterize 96.4 0.025 8.7E-07 44.1 9.8 78 79-162 25-117 (123)
178 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.0016 5.6E-08 57.6 3.2 29 187-215 46-75 (322)
179 4edh_A DTMP kinase, thymidylat 96.4 0.0019 6.4E-08 54.8 3.3 35 183-217 3-40 (213)
180 4eld_A MJ16.5-P1, small heat s 96.4 0.032 1.1E-06 45.5 10.4 76 81-162 59-152 (161)
181 2qgz_A Helicase loader, putati 96.4 0.0024 8.4E-08 56.5 4.0 41 186-226 152-198 (308)
182 1fnn_A CDC6P, cell division co 96.3 0.0027 9.4E-08 54.6 4.1 28 188-215 46-77 (389)
183 2bjv_A PSP operon transcriptio 96.3 0.0034 1.1E-07 52.6 4.5 40 172-211 14-54 (265)
184 3te6_A Regulatory protein SIR3 96.3 0.002 6.7E-08 58.7 3.3 38 173-210 29-69 (318)
185 2c9o_A RUVB-like 1; hexameric 96.3 0.0016 5.6E-08 60.1 2.8 33 184-216 61-95 (456)
186 3ld9_A DTMP kinase, thymidylat 96.3 0.0018 6E-08 56.1 2.8 30 183-212 18-47 (223)
187 2ce7_A Cell division protein F 96.3 0.0011 3.9E-08 63.2 1.5 31 187-217 50-80 (476)
188 3m6a_A ATP-dependent protease 96.3 0.0023 7.8E-08 61.1 3.6 34 182-215 104-137 (543)
189 1s96_A Guanylate kinase, GMP k 96.3 0.0026 8.9E-08 54.0 3.6 29 183-211 13-41 (219)
190 1iqp_A RFCS; clamp loader, ext 96.3 0.0027 9.4E-08 53.3 3.7 51 159-211 18-71 (327)
191 1gme_A Heat shock protein 16.9 96.3 0.049 1.7E-06 44.3 11.0 79 78-162 43-139 (151)
192 3foz_A TRNA delta(2)-isopenten 96.3 0.0016 5.3E-08 60.2 2.3 34 186-219 10-43 (316)
193 2qen_A Walker-type ATPase; unk 96.2 0.0031 1E-07 53.2 3.8 34 186-219 31-64 (350)
194 3pxi_A Negative regulator of g 96.2 0.0039 1.3E-07 61.0 4.9 46 174-219 186-244 (758)
195 3tmk_A Thymidylate kinase; pho 96.2 0.0034 1.1E-07 53.9 3.7 28 185-212 4-31 (216)
196 1sxj_C Activator 1 40 kDa subu 96.1 0.0035 1.2E-07 54.8 3.9 50 159-210 18-70 (340)
197 3eph_A TRNA isopentenyltransfe 96.1 0.0017 5.9E-08 61.8 1.9 70 188-257 4-92 (409)
198 1m2o_B GTP-binding protein SAR 96.1 0.0035 1.2E-07 49.7 3.4 41 168-208 5-45 (190)
199 2ehv_A Hypothetical protein PH 96.1 0.0033 1.1E-07 51.0 3.2 25 183-207 27-51 (251)
200 2eyu_A Twitching motility prot 96.0 0.0051 1.7E-07 53.6 4.2 34 176-210 16-49 (261)
201 2qmh_A HPR kinase/phosphorylas 96.0 0.0025 8.7E-08 55.8 2.3 35 184-219 32-66 (205)
202 2i3b_A HCR-ntpase, human cance 96.0 0.004 1.4E-07 51.9 3.2 25 186-210 1-25 (189)
203 4tmk_A Protein (thymidylate ki 96.0 0.0046 1.6E-07 52.6 3.6 29 184-212 1-32 (213)
204 2chq_A Replication factor C sm 95.9 0.0063 2.1E-07 50.9 4.3 50 159-210 10-62 (319)
205 4a74_A DNA repair and recombin 95.9 0.0056 1.9E-07 49.0 3.8 26 185-210 24-49 (231)
206 2px0_A Flagellar biosynthesis 95.9 0.0074 2.5E-07 53.5 4.9 46 173-218 82-143 (296)
207 3lv8_A DTMP kinase, thymidylat 95.9 0.0047 1.6E-07 53.6 3.6 30 182-211 23-52 (236)
208 4b4t_K 26S protease regulatory 95.9 0.0036 1.2E-07 59.3 3.0 30 188-217 208-237 (428)
209 4b4t_M 26S protease regulatory 95.9 0.0037 1.3E-07 59.4 3.1 32 186-217 215-246 (434)
210 2w0m_A SSO2452; RECA, SSPF, un 95.9 0.005 1.7E-07 48.9 3.4 28 183-210 20-47 (235)
211 1sxj_E Activator 1 40 kDa subu 95.9 0.0056 1.9E-07 52.8 3.9 36 175-210 21-60 (354)
212 3cf2_A TER ATPase, transitiona 95.9 0.0038 1.3E-07 63.6 3.3 48 187-234 512-564 (806)
213 4b4t_L 26S protease subunit RP 95.8 0.0042 1.4E-07 59.1 3.1 40 187-226 216-257 (437)
214 3aez_A Pantothenate kinase; tr 95.8 0.0051 1.8E-07 55.0 3.3 27 184-210 88-114 (312)
215 3cf2_A TER ATPase, transitiona 95.8 0.0027 9.4E-08 64.6 1.7 48 187-234 239-291 (806)
216 3nbx_X ATPase RAVA; AAA+ ATPas 95.7 0.0061 2.1E-07 58.4 3.9 34 178-211 33-66 (500)
217 1svm_A Large T antigen; AAA+ f 95.7 0.0054 1.8E-07 56.8 3.4 35 182-216 165-199 (377)
218 3pvs_A Replication-associated 95.7 0.0051 1.7E-07 57.7 3.2 32 187-218 51-82 (447)
219 1odf_A YGR205W, hypothetical 3 95.7 0.0047 1.6E-07 54.8 2.8 40 172-211 12-56 (290)
220 3tif_A Uncharacterized ABC tra 95.7 0.0047 1.6E-07 52.7 2.7 27 184-210 29-55 (235)
221 2orw_A Thymidine kinase; TMTK, 95.7 0.0071 2.4E-07 49.7 3.6 26 185-210 2-27 (184)
222 2pcj_A ABC transporter, lipopr 95.7 0.0055 1.9E-07 51.8 2.9 27 184-210 28-54 (224)
223 3hu3_A Transitional endoplasmi 95.7 0.0056 1.9E-07 58.2 3.3 36 186-221 238-275 (489)
224 1g8p_A Magnesium-chelatase 38 95.6 0.0048 1.6E-07 52.8 2.5 27 185-211 44-70 (350)
225 1ypw_A Transitional endoplasmi 95.6 0.0046 1.6E-07 61.9 2.6 33 185-217 237-269 (806)
226 3b85_A Phosphate starvation-in 95.6 0.0065 2.2E-07 51.3 3.1 27 183-209 19-45 (208)
227 4b4t_J 26S protease regulatory 95.6 0.0054 1.8E-07 58.1 2.8 38 187-224 183-222 (405)
228 2z4s_A Chromosomal replication 95.5 0.0079 2.7E-07 55.7 3.7 37 186-222 130-173 (440)
229 3u61_B DNA polymerase accessor 95.5 0.0081 2.8E-07 51.5 3.5 44 175-218 33-80 (324)
230 1a5t_A Delta prime, HOLB; zinc 95.5 0.013 4.3E-07 51.8 4.8 45 169-213 7-51 (334)
231 3kta_A Chromosome segregation 95.5 0.011 3.7E-07 46.5 3.9 27 185-212 26-52 (182)
232 2cbz_A Multidrug resistance-as 95.5 0.0063 2.2E-07 52.0 2.7 28 183-210 28-55 (237)
233 3tqf_A HPR(Ser) kinase; transf 95.5 0.0069 2.4E-07 52.4 2.9 35 184-219 14-48 (181)
234 3b9q_A Chloroplast SRP recepto 95.5 0.0078 2.7E-07 53.6 3.3 38 173-210 73-124 (302)
235 1jr3_A DNA polymerase III subu 95.5 0.014 4.6E-07 50.3 4.6 25 188-212 40-64 (373)
236 2d2e_A SUFC protein; ABC-ATPas 95.5 0.0081 2.8E-07 51.6 3.2 27 183-209 26-52 (250)
237 1ji0_A ABC transporter; ATP bi 95.5 0.0067 2.3E-07 51.8 2.7 28 183-210 29-56 (240)
238 2pze_A Cystic fibrosis transme 95.4 0.0068 2.3E-07 51.4 2.7 28 183-210 31-58 (229)
239 1sxj_B Activator 1 37 kDa subu 95.4 0.0099 3.4E-07 49.8 3.7 23 188-210 44-66 (323)
240 1rj9_A FTSY, signal recognitio 95.4 0.0085 2.9E-07 53.6 3.4 26 185-210 101-126 (304)
241 1mv5_A LMRA, multidrug resista 95.4 0.0068 2.3E-07 51.8 2.7 29 182-210 24-52 (243)
242 2v9p_A Replication protein E1; 95.4 0.0083 2.8E-07 54.3 3.3 35 176-210 115-150 (305)
243 2ff7_A Alpha-hemolysin translo 95.4 0.007 2.4E-07 52.1 2.7 28 183-210 32-59 (247)
244 3l1e_A Alpha-crystallin A chai 95.4 0.14 4.7E-06 39.4 9.7 75 82-162 6-91 (106)
245 1b0u_A Histidine permease; ABC 95.4 0.0072 2.5E-07 52.5 2.7 27 184-210 30-56 (262)
246 1r6b_X CLPA protein; AAA+, N-t 95.4 0.012 4.2E-07 57.1 4.5 28 188-215 490-517 (758)
247 1lw7_A Transcriptional regulat 95.4 0.0091 3.1E-07 53.3 3.4 39 173-212 158-196 (365)
248 1g6h_A High-affinity branched- 95.3 0.0076 2.6E-07 52.0 2.7 29 182-210 29-57 (257)
249 4g1u_C Hemin import ATP-bindin 95.3 0.0077 2.6E-07 52.7 2.7 28 183-210 34-61 (266)
250 4b4t_H 26S protease regulatory 95.3 0.0067 2.3E-07 58.7 2.5 39 186-224 243-283 (467)
251 3ch4_B Pmkase, phosphomevalona 95.3 0.01 3.4E-07 51.4 3.4 35 188-222 13-50 (202)
252 2zu0_C Probable ATP-dependent 95.3 0.0097 3.3E-07 51.8 3.2 28 183-210 43-70 (267)
253 2hf9_A Probable hydrogenase ni 95.3 0.018 6.2E-07 46.3 4.6 42 169-210 18-62 (226)
254 2ghi_A Transport protein; mult 95.2 0.0085 2.9E-07 52.0 2.7 28 183-210 43-70 (260)
255 2fna_A Conserved hypothetical 95.2 0.021 7.3E-07 48.0 5.1 36 177-213 22-57 (357)
256 2ixe_A Antigen peptide transpo 95.2 0.0085 2.9E-07 52.4 2.7 28 183-210 42-69 (271)
257 1ojl_A Transcriptional regulat 95.2 0.02 6.8E-07 50.3 5.0 44 172-215 10-57 (304)
258 2yv5_A YJEQ protein; hydrolase 95.2 0.016 5.6E-07 51.0 4.5 31 179-210 158-188 (302)
259 3gfo_A Cobalt import ATP-bindi 95.2 0.0088 3E-07 52.8 2.7 28 183-210 31-58 (275)
260 3tqc_A Pantothenate kinase; bi 95.2 0.018 6.1E-07 52.4 4.8 24 188-211 94-117 (321)
261 3q9p_A Heat shock protein beta 95.2 0.16 5.5E-06 37.4 9.1 71 84-160 3-84 (85)
262 2olj_A Amino acid ABC transpor 95.2 0.0091 3.1E-07 52.3 2.7 26 185-210 49-74 (263)
263 2qi9_C Vitamin B12 import ATP- 95.2 0.0093 3.2E-07 51.8 2.7 29 182-210 22-50 (249)
264 2yz2_A Putative ABC transporte 95.2 0.0093 3.2E-07 51.8 2.7 28 183-210 30-57 (266)
265 2wj5_A Heat shock protein beta 95.2 0.12 4E-06 39.3 8.6 78 82-162 5-90 (101)
266 2ihy_A ABC transporter, ATP-bi 95.1 0.0093 3.2E-07 52.6 2.7 28 183-210 44-71 (279)
267 4b4t_I 26S protease regulatory 95.1 0.0099 3.4E-07 57.1 3.0 31 187-217 217-247 (437)
268 2dhr_A FTSH; AAA+ protein, hex 95.1 0.01 3.5E-07 57.0 3.1 29 188-216 66-94 (499)
269 2gza_A Type IV secretion syste 95.1 0.011 3.7E-07 53.5 3.0 30 182-211 171-200 (361)
270 1sgw_A Putative ABC transporte 95.1 0.0095 3.2E-07 50.7 2.5 27 184-210 33-59 (214)
271 1vpl_A ABC transporter, ATP-bi 95.1 0.01 3.5E-07 51.7 2.7 28 183-210 38-65 (256)
272 1ex7_A Guanylate kinase; subst 95.0 0.013 4.4E-07 49.3 3.1 67 188-254 3-109 (186)
273 2nq2_C Hypothetical ABC transp 95.0 0.011 3.7E-07 51.2 2.7 28 183-210 28-55 (253)
274 1ypw_A Transitional endoplasmi 95.0 0.0066 2.2E-07 60.8 1.5 33 185-217 510-542 (806)
275 3e70_C DPA, signal recognition 95.0 0.014 4.6E-07 52.9 3.4 26 185-210 128-153 (328)
276 1vma_A Cell division protein F 95.0 0.023 8E-07 50.9 4.8 38 173-210 80-128 (306)
277 1n0w_A DNA repair protein RAD5 95.0 0.015 5.1E-07 47.0 3.2 25 185-209 23-47 (243)
278 1ko7_A HPR kinase/phosphatase; 95.0 0.012 4.1E-07 53.9 2.9 34 185-219 143-176 (314)
279 2cvh_A DNA repair and recombin 94.9 0.015 5.3E-07 46.2 3.2 37 183-219 17-55 (220)
280 1u0l_A Probable GTPase ENGC; p 94.9 0.015 5.1E-07 51.0 3.3 32 179-210 162-193 (301)
281 2y1y_A Alpha-crystallin B chai 94.9 0.12 3.9E-06 38.4 7.7 72 85-162 3-85 (90)
282 3k1j_A LON protease, ATP-depen 94.9 0.015 5.3E-07 55.7 3.6 38 177-214 50-88 (604)
283 2og2_A Putative signal recogni 94.8 0.016 5.6E-07 53.4 3.4 38 173-210 130-181 (359)
284 3nh6_A ATP-binding cassette SU 94.8 0.01 3.6E-07 53.4 2.0 26 185-210 79-104 (306)
285 2gj8_A MNME, tRNA modification 94.8 0.019 6.5E-07 44.9 3.3 25 185-209 3-27 (172)
286 1qvr_A CLPB protein; coiled co 94.8 0.01 3.5E-07 59.1 2.1 36 175-210 177-215 (854)
287 2f1r_A Molybdopterin-guanine d 94.8 0.01 3.5E-07 48.9 1.8 23 188-210 4-26 (171)
288 3f9v_A Minichromosome maintena 94.7 0.011 3.6E-07 57.5 2.1 27 188-214 329-355 (595)
289 2fz4_A DNA repair protein RAD2 94.7 0.031 1E-06 47.2 4.7 55 171-225 93-150 (237)
290 1osn_A Thymidine kinase, VZV-T 94.7 0.0068 2.3E-07 56.1 0.6 56 180-235 6-68 (341)
291 1r6b_X CLPA protein; AAA+, N-t 94.7 0.017 5.8E-07 56.1 3.4 26 185-210 206-231 (758)
292 1p6x_A Thymidine kinase; P-loo 94.7 0.013 4.3E-07 54.0 2.4 52 183-234 4-61 (334)
293 1of1_A Thymidine kinase; trans 94.7 0.009 3.1E-07 56.1 1.4 58 178-235 41-103 (376)
294 1kao_A RAP2A; GTP-binding prot 94.6 0.019 6.4E-07 42.6 2.8 25 185-209 2-26 (167)
295 2dr3_A UPF0273 protein PH0284; 94.6 0.023 8E-07 45.8 3.6 26 184-209 21-46 (247)
296 2ce2_X GTPase HRAS; signaling 94.6 0.021 7.1E-07 42.1 3.0 24 186-209 3-26 (166)
297 2bbs_A Cystic fibrosis transme 94.6 0.017 5.7E-07 51.4 2.9 28 183-210 61-88 (290)
298 1pui_A ENGB, probable GTP-bind 94.6 0.0096 3.3E-07 47.1 1.1 28 182-209 22-49 (210)
299 4hlc_A DTMP kinase, thymidylat 94.5 0.022 7.6E-07 47.8 3.3 31 186-216 2-34 (205)
300 2onk_A Molybdate/tungstate ABC 94.5 0.018 6E-07 49.7 2.8 23 188-210 26-48 (240)
301 2k8q_A Protein SHQ1; beta-sand 94.5 0.095 3.2E-06 43.4 7.0 87 78-171 3-92 (134)
302 2ewv_A Twitching motility prot 94.5 0.021 7.3E-07 52.0 3.4 28 183-210 133-160 (372)
303 3bwd_D RAC-like GTP-binding pr 94.5 0.025 8.5E-07 43.1 3.2 30 180-209 2-31 (182)
304 1nlf_A Regulatory protein REPA 94.5 0.025 8.6E-07 48.1 3.6 28 183-210 27-54 (279)
305 1w5s_A Origin recognition comp 94.5 0.016 5.5E-07 50.4 2.4 25 186-210 50-76 (412)
306 1xx6_A Thymidine kinase; NESG, 94.5 0.025 8.6E-07 47.5 3.5 30 185-214 7-39 (191)
307 2pjz_A Hypothetical protein ST 94.4 0.018 6.1E-07 50.4 2.6 25 186-210 30-54 (263)
308 2rcn_A Probable GTPase ENGC; Y 94.4 0.029 1E-06 51.9 4.1 60 151-210 161-239 (358)
309 2pt7_A CAG-ALFA; ATPase, prote 94.4 0.015 5.1E-07 52.2 2.1 35 176-210 160-195 (330)
310 3b6e_A Interferon-induced heli 94.4 0.033 1.1E-06 43.8 3.9 61 173-233 35-107 (216)
311 1cr0_A DNA primase/helicase; R 94.4 0.027 9.2E-07 48.1 3.6 29 182-210 31-59 (296)
312 3sop_A Neuronal-specific septi 94.3 0.025 8.7E-07 49.4 3.3 23 188-210 4-26 (270)
313 2b8t_A Thymidine kinase; deoxy 94.3 0.026 8.9E-07 48.7 3.3 26 185-210 11-36 (223)
314 2wjg_A FEOB, ferrous iron tran 94.2 0.025 8.6E-07 43.6 2.8 25 185-209 6-30 (188)
315 3pxi_A Negative regulator of g 94.2 0.035 1.2E-06 54.3 4.4 23 188-210 523-545 (758)
316 3fvq_A Fe(3+) IONS import ATP- 94.2 0.027 9.2E-07 52.2 3.4 26 185-210 29-54 (359)
317 3ozx_A RNAse L inhibitor; ATP 94.2 0.051 1.7E-06 52.3 5.4 50 184-233 23-78 (538)
318 1f6b_A SAR1; gtpases, N-termin 94.1 0.038 1.3E-06 44.2 3.7 34 175-208 14-47 (198)
319 2yhs_A FTSY, cell division pro 94.1 0.026 9E-07 55.0 3.3 38 173-210 268-317 (503)
320 1z47_A CYSA, putative ABC-tran 94.1 0.027 9.3E-07 51.9 3.2 27 184-210 39-65 (355)
321 2npi_A Protein CLP1; CLP1-PCF1 94.1 0.028 9.7E-07 53.2 3.4 29 182-210 134-162 (460)
322 1u8z_A RAS-related protein RAL 94.1 0.03 1E-06 41.5 2.8 25 185-209 3-27 (168)
323 2yyz_A Sugar ABC transporter, 94.1 0.028 9.6E-07 51.8 3.2 26 185-210 28-53 (359)
324 3d31_A Sulfate/molybdate ABC t 94.1 0.023 7.7E-07 52.2 2.6 27 184-210 24-50 (348)
325 1xjc_A MOBB protein homolog; s 94.0 0.028 9.5E-07 46.9 2.9 26 188-213 6-34 (169)
326 3rlf_A Maltose/maltodextrin im 94.0 0.028 9.7E-07 52.5 3.2 26 185-210 28-53 (381)
327 3bk7_A ABC transporter ATP-bin 94.0 0.05 1.7E-06 53.2 5.1 28 183-210 114-141 (607)
328 1qvr_A CLPB protein; coiled co 94.0 0.027 9.1E-07 56.2 3.2 28 187-214 589-619 (854)
329 2it1_A 362AA long hypothetical 94.0 0.029 1E-06 51.8 3.2 26 185-210 28-53 (362)
330 1oix_A RAS-related protein RAB 94.0 0.035 1.2E-06 44.1 3.3 24 187-210 30-53 (191)
331 3hjn_A DTMP kinase, thymidylat 94.0 0.031 1.1E-06 46.4 3.1 29 189-217 3-34 (197)
332 1tue_A Replication protein E1; 94.0 0.03 1E-06 49.2 3.2 38 179-216 47-88 (212)
333 1g29_1 MALK, maltose transport 94.0 0.03 1E-06 51.7 3.2 26 185-210 28-53 (372)
334 1v43_A Sugar-binding transport 93.9 0.031 1E-06 51.8 3.2 27 184-210 35-61 (372)
335 2wji_A Ferrous iron transport 93.9 0.032 1.1E-06 42.9 2.8 23 187-209 4-26 (165)
336 3tui_C Methionine import ATP-b 93.9 0.031 1.1E-06 52.1 3.2 28 183-210 51-78 (366)
337 2obl_A ESCN; ATPase, hydrolase 93.9 0.043 1.5E-06 50.0 4.0 37 175-211 60-96 (347)
338 3con_A GTPase NRAS; structural 93.9 0.029 9.9E-07 43.5 2.5 26 184-209 19-44 (190)
339 2dyk_A GTP-binding protein; GT 93.9 0.035 1.2E-06 41.3 2.9 23 187-209 2-24 (161)
340 1c1y_A RAS-related protein RAP 93.9 0.034 1.1E-06 41.5 2.8 24 186-209 3-26 (167)
341 3gd7_A Fusion complex of cysti 93.9 0.035 1.2E-06 51.8 3.4 29 182-210 43-71 (390)
342 2f9l_A RAB11B, member RAS onco 93.8 0.036 1.2E-06 43.9 3.0 23 187-209 6-28 (199)
343 3b5x_A Lipid A export ATP-bind 93.8 0.03 1E-06 53.4 3.0 29 182-210 365-393 (582)
344 1yqt_A RNAse L inhibitor; ATP- 93.8 0.032 1.1E-06 53.4 3.2 28 183-210 44-71 (538)
345 1z2a_A RAS-related protein RAB 93.8 0.038 1.3E-06 41.2 2.9 23 187-209 6-28 (168)
346 3b60_A Lipid A export ATP-bind 93.8 0.03 1E-06 53.5 2.9 27 184-210 367-393 (582)
347 1e2k_A Thymidine kinase; trans 93.7 0.016 5.5E-07 53.2 1.0 52 184-235 2-58 (331)
348 1oxx_K GLCV, glucose, ABC tran 93.7 0.023 7.7E-07 52.1 1.9 27 184-210 29-55 (353)
349 2dpy_A FLII, flagellum-specifi 93.7 0.049 1.7E-06 51.2 4.2 48 164-211 132-182 (438)
350 1ls1_A Signal recognition part 93.6 0.04 1.4E-06 48.6 3.3 26 185-210 97-122 (295)
351 1ek0_A Protein (GTP-binding pr 93.6 0.035 1.2E-06 41.3 2.5 23 187-209 4-26 (170)
352 1t9h_A YLOQ, probable GTPase E 93.6 0.018 6.3E-07 52.0 1.0 60 150-209 117-196 (307)
353 2yl4_A ATP-binding cassette SU 93.6 0.03 1E-06 53.6 2.6 26 185-210 369-394 (595)
354 2lkc_A Translation initiation 93.5 0.043 1.5E-06 41.6 2.9 24 185-208 7-30 (178)
355 2erx_A GTP-binding protein DI- 93.5 0.044 1.5E-06 40.9 2.8 23 186-208 3-25 (172)
356 1yrb_A ATP(GTP)binding protein 93.5 0.051 1.7E-06 44.8 3.5 35 184-218 12-50 (262)
357 1zu4_A FTSY; GTPase, signal re 93.4 0.044 1.5E-06 49.3 3.3 33 186-218 105-142 (320)
358 2wsm_A Hydrogenase expression/ 93.4 0.059 2E-06 43.1 3.7 26 186-211 30-55 (221)
359 2oap_1 GSPE-2, type II secreti 93.4 0.038 1.3E-06 52.9 2.9 28 184-211 258-285 (511)
360 2ged_A SR-beta, signal recogni 93.3 0.054 1.8E-06 42.0 3.2 24 186-209 48-71 (193)
361 3eud_A Protein SHQ1; CS domain 93.3 0.72 2.4E-05 37.5 9.9 88 76-170 15-105 (115)
362 1z0j_A RAB-22, RAS-related pro 93.3 0.05 1.7E-06 40.6 2.9 25 185-209 5-29 (170)
363 2y8e_A RAB-protein 6, GH09086P 93.3 0.046 1.6E-06 41.2 2.7 25 184-208 12-36 (179)
364 2fn4_A P23, RAS-related protei 93.3 0.055 1.9E-06 40.8 3.1 24 186-209 9-32 (181)
365 1g16_A RAS-related protein SEC 93.3 0.055 1.9E-06 40.4 3.1 22 187-208 4-25 (170)
366 4gzl_A RAS-related C3 botulinu 93.3 0.059 2E-06 43.1 3.4 44 165-208 9-52 (204)
367 1nij_A Hypothetical protein YJ 93.3 0.045 1.6E-06 48.3 3.0 21 189-209 7-27 (318)
368 3jvv_A Twitching mobility prot 93.2 0.05 1.7E-06 49.8 3.4 27 184-210 121-147 (356)
369 1np6_A Molybdopterin-guanine d 93.2 0.047 1.6E-06 45.1 2.9 23 188-210 8-30 (174)
370 2zej_A Dardarin, leucine-rich 93.2 0.041 1.4E-06 43.1 2.4 22 187-208 3-24 (184)
371 2vhj_A Ntpase P4, P4; non- hyd 93.2 0.035 1.2E-06 51.6 2.3 36 182-217 119-156 (331)
372 3qf4_B Uncharacterized ABC tra 93.2 0.039 1.3E-06 53.1 2.6 27 184-210 379-405 (598)
373 1upt_A ARL1, ADP-ribosylation 93.2 0.06 2.1E-06 40.4 3.2 24 185-208 6-29 (171)
374 2bol_A TSP36, small heat shock 93.2 0.73 2.5E-05 42.2 10.9 83 75-163 98-191 (314)
375 1z08_A RAS-related protein RAB 93.1 0.056 1.9E-06 40.5 2.9 23 187-209 7-29 (170)
376 1z0f_A RAB14, member RAS oncog 93.1 0.057 1.9E-06 40.7 2.9 24 187-210 16-39 (179)
377 1mh1_A RAC1; GTP-binding, GTPa 93.0 0.052 1.8E-06 41.3 2.7 25 185-209 4-28 (186)
378 3clv_A RAB5 protein, putative; 93.0 0.067 2.3E-06 40.7 3.2 24 186-209 7-30 (208)
379 3q85_A GTP-binding protein REM 93.0 0.062 2.1E-06 40.4 3.0 21 188-208 4-24 (169)
380 1r8s_A ADP-ribosylation factor 92.9 0.072 2.5E-06 39.8 3.3 22 188-209 2-23 (164)
381 1moz_A ARL1, ADP-ribosylation 92.9 0.097 3.3E-06 39.9 4.1 23 185-207 17-39 (183)
382 1r2q_A RAS-related protein RAB 92.9 0.063 2.1E-06 40.0 2.9 22 187-208 7-28 (170)
383 2hxs_A RAB-26, RAS-related pro 92.9 0.065 2.2E-06 40.6 3.1 24 186-209 6-29 (178)
384 3upu_A ATP-dependent DNA helic 92.9 0.11 3.9E-06 47.7 5.2 52 158-210 16-69 (459)
385 2a9k_A RAS-related protein RAL 92.9 0.059 2E-06 40.9 2.8 27 183-209 15-41 (187)
386 3q72_A GTP-binding protein RAD 92.9 0.065 2.2E-06 40.1 3.0 21 187-207 3-23 (166)
387 1wms_A RAB-9, RAB9, RAS-relate 92.9 0.063 2.2E-06 40.6 2.9 23 187-209 8-30 (177)
388 1p9r_A General secretion pathw 92.9 0.088 3E-06 49.3 4.5 28 184-211 165-192 (418)
389 3bc1_A RAS-related protein RAB 92.9 0.063 2.2E-06 40.8 2.9 22 187-208 12-33 (195)
390 2z0m_A 337AA long hypothetical 92.8 0.088 3E-06 43.9 4.0 53 173-225 18-73 (337)
391 2nzj_A GTP-binding protein REM 92.8 0.066 2.3E-06 40.3 3.0 22 187-208 5-26 (175)
392 2qm8_A GTPase/ATPase; G protei 92.8 0.064 2.2E-06 48.1 3.4 35 176-210 44-79 (337)
393 1ky3_A GTP-binding protein YPT 92.8 0.066 2.3E-06 40.4 2.9 23 187-209 9-31 (182)
394 1tq4_A IIGP1, interferon-induc 92.8 0.068 2.3E-06 50.2 3.6 22 188-209 71-92 (413)
395 2gxq_A Heat resistant RNA depe 92.7 0.12 4.1E-06 40.8 4.4 52 174-225 26-89 (207)
396 1pzn_A RAD51, DNA repair and r 92.7 0.06 2.1E-06 48.5 3.0 26 185-210 130-155 (349)
397 1nrj_B SR-beta, signal recogni 92.7 0.075 2.5E-06 42.3 3.2 25 186-210 12-36 (218)
398 2klr_A Alpha-crystallin B chai 92.6 0.51 1.7E-05 39.7 8.5 78 82-162 67-152 (175)
399 2fwr_A DNA repair protein RAD2 92.6 0.099 3.4E-06 47.0 4.3 53 173-225 95-150 (472)
400 4dsu_A GTPase KRAS, isoform 2B 92.6 0.071 2.4E-06 40.6 2.9 23 187-209 5-27 (189)
401 3t1o_A Gliding protein MGLA; G 92.6 0.077 2.6E-06 40.6 3.1 24 187-210 15-38 (198)
402 1svi_A GTP-binding protein YSX 92.6 0.075 2.6E-06 41.1 3.1 24 186-209 23-46 (195)
403 3oes_A GTPase rhebl1; small GT 92.6 0.071 2.4E-06 42.1 3.0 26 184-209 22-47 (201)
404 1yqt_A RNAse L inhibitor; ATP- 92.6 0.064 2.2E-06 51.4 3.2 27 184-210 310-336 (538)
405 2bme_A RAB4A, RAS-related prot 92.6 0.079 2.7E-06 40.5 3.1 23 187-209 11-33 (186)
406 2iwr_A Centaurin gamma 1; ANK 92.6 0.044 1.5E-06 41.9 1.7 25 185-209 6-30 (178)
407 1vec_A ATP-dependent RNA helic 92.5 0.16 5.5E-06 40.1 5.0 53 173-225 27-88 (206)
408 2qnr_A Septin-2, protein NEDD5 92.5 0.061 2.1E-06 47.4 2.8 27 182-208 12-40 (301)
409 2cxx_A Probable GTP-binding pr 92.5 0.082 2.8E-06 40.5 3.2 22 188-209 3-24 (190)
410 3lxx_A GTPase IMAP family memb 92.5 0.071 2.4E-06 43.9 3.0 23 186-208 29-51 (239)
411 2gf0_A GTP-binding protein DI- 92.5 0.097 3.3E-06 40.5 3.6 24 185-208 7-30 (199)
412 3pqc_A Probable GTP-binding pr 92.4 0.075 2.6E-06 40.7 2.8 23 187-209 24-46 (195)
413 3llm_A ATP-dependent RNA helic 92.4 0.11 3.8E-06 43.0 4.1 34 173-206 63-96 (235)
414 2g6b_A RAS-related protein RAB 92.4 0.08 2.7E-06 40.2 2.9 24 186-209 10-33 (180)
415 4a82_A Cystic fibrosis transme 92.4 0.036 1.2E-06 53.0 1.2 27 184-210 365-391 (578)
416 2h17_A ADP-ribosylation factor 92.3 0.081 2.8E-06 41.0 2.9 27 183-209 18-44 (181)
417 1qde_A EIF4A, translation init 92.3 0.32 1.1E-05 39.0 6.5 53 173-225 38-99 (224)
418 4ag6_A VIRB4 ATPase, type IV s 92.2 0.082 2.8E-06 47.2 3.3 28 183-210 32-59 (392)
419 3tw8_B RAS-related protein RAB 92.2 0.081 2.8E-06 39.9 2.8 22 187-208 10-31 (181)
420 4aby_A DNA repair protein RECN 92.2 0.044 1.5E-06 48.8 1.4 27 185-212 60-86 (415)
421 2efe_B Small GTP-binding prote 92.2 0.087 3E-06 40.0 2.9 24 186-209 12-35 (181)
422 1m7b_A RND3/RHOE small GTP-bin 92.2 0.094 3.2E-06 40.7 3.1 23 187-209 8-30 (184)
423 3kkq_A RAS-related protein M-R 92.1 0.088 3E-06 40.3 2.9 26 184-209 16-41 (183)
424 3qf4_A ABC transporter, ATP-bi 92.1 0.047 1.6E-06 52.5 1.7 27 184-210 367-393 (587)
425 3j16_B RLI1P; ribosome recycli 92.1 0.07 2.4E-06 52.3 2.9 50 184-233 101-156 (608)
426 3t5g_A GTP-binding protein RHE 92.1 0.098 3.4E-06 40.0 3.1 22 187-208 7-28 (181)
427 3ozx_A RNAse L inhibitor; ATP 92.1 0.068 2.3E-06 51.5 2.7 28 183-210 291-318 (538)
428 3eiq_A Eukaryotic initiation f 92.1 0.13 4.6E-06 44.3 4.3 50 176-225 67-125 (414)
429 1j8m_F SRP54, signal recogniti 92.1 0.091 3.1E-06 46.6 3.3 33 186-218 98-135 (297)
430 1z6t_A APAF-1, apoptotic prote 92.1 0.13 4.5E-06 47.6 4.5 35 174-208 130-169 (591)
431 2p67_A LAO/AO transport system 92.0 0.099 3.4E-06 46.6 3.6 27 184-210 54-80 (341)
432 1zj6_A ADP-ribosylation factor 92.0 0.1 3.5E-06 40.5 3.2 24 185-208 15-38 (187)
433 3bk7_A ABC transporter ATP-bin 92.0 0.083 2.8E-06 51.7 3.2 28 183-210 379-406 (607)
434 3kl4_A SRP54, signal recogniti 92.0 0.074 2.5E-06 50.4 2.8 33 186-218 97-134 (433)
435 1vg8_A RAS-related protein RAB 91.9 0.095 3.3E-06 40.9 2.9 24 186-209 8-31 (207)
436 2bov_A RAla, RAS-related prote 91.9 0.096 3.3E-06 40.7 2.9 25 185-209 13-37 (206)
437 2oil_A CATX-8, RAS-related pro 91.8 0.1 3.5E-06 40.6 3.0 23 187-209 26-48 (193)
438 1u0j_A DNA replication protein 91.8 0.17 5.8E-06 45.4 4.8 36 175-210 88-128 (267)
439 2atv_A RERG, RAS-like estrogen 91.8 0.11 3.7E-06 40.8 3.2 25 185-209 27-51 (196)
440 3ec1_A YQEH GTPase; atnos1, at 91.8 0.15 5.2E-06 46.3 4.6 34 176-209 152-185 (369)
441 3p32_A Probable GTPase RV1496/ 91.7 0.11 3.8E-06 46.4 3.5 32 187-218 80-116 (355)
442 1zd9_A ADP-ribosylation factor 91.7 0.087 3E-06 41.2 2.5 24 186-209 22-45 (188)
443 1c9k_A COBU, adenosylcobinamid 91.7 0.084 2.9E-06 44.6 2.6 28 189-217 2-31 (180)
444 2p5s_A RAS and EF-hand domain 91.7 0.1 3.5E-06 41.1 2.9 25 185-209 27-51 (199)
445 3dz8_A RAS-related protein RAB 91.7 0.13 4.3E-06 40.2 3.4 23 187-209 24-46 (191)
446 3reg_A RHO-like small GTPase; 91.7 0.088 3E-06 41.1 2.5 28 182-209 19-46 (194)
447 1tf7_A KAIC; homohexamer, hexa 91.7 0.11 3.7E-06 48.9 3.6 24 183-206 36-59 (525)
448 1x3s_A RAS-related protein RAB 91.7 0.083 2.8E-06 40.6 2.3 26 184-209 13-38 (195)
449 1wp9_A ATP-dependent RNA helic 91.7 0.14 4.7E-06 44.0 3.8 54 171-225 9-69 (494)
450 3ihw_A Centg3; RAS, centaurin, 91.6 0.11 3.6E-06 41.1 2.9 26 184-209 18-43 (184)
451 1fzq_A ADP-ribosylation factor 91.6 0.12 4.2E-06 40.3 3.2 24 186-209 16-39 (181)
452 3c5c_A RAS-like protein 12; GD 91.6 0.1 3.5E-06 41.0 2.8 25 185-209 20-44 (187)
453 1ksh_A ARF-like protein 2; sma 91.6 0.11 3.9E-06 39.9 3.0 25 185-209 17-41 (186)
454 2fg5_A RAB-22B, RAS-related pr 91.6 0.12 4E-06 40.6 3.1 24 186-209 23-46 (192)
455 3h2y_A GTPase family protein; 91.5 0.18 6.3E-06 45.8 4.8 34 176-209 150-183 (368)
456 2q3h_A RAS homolog gene family 91.5 0.12 4.1E-06 40.5 3.1 26 184-209 18-43 (201)
457 1t6n_A Probable ATP-dependent 91.5 0.29 1E-05 39.2 5.5 52 174-225 39-99 (220)
458 3tkl_A RAS-related protein RAB 91.5 0.11 3.9E-06 40.0 2.9 23 187-209 17-39 (196)
459 1z06_A RAS-related protein RAB 91.5 0.11 3.9E-06 40.3 2.9 24 185-208 19-42 (189)
460 2bcg_Y Protein YP2, GTP-bindin 91.4 0.12 4.2E-06 40.7 3.1 23 187-209 9-31 (206)
461 3cph_A RAS-related protein SEC 91.4 0.13 4.5E-06 40.3 3.2 24 185-208 19-42 (213)
462 2xtp_A GTPase IMAP family memb 91.4 0.13 4.6E-06 42.7 3.4 26 183-208 19-44 (260)
463 2gf9_A RAS-related protein RAB 91.3 0.12 4.1E-06 40.2 2.9 23 187-209 23-45 (189)
464 2fh5_B SR-beta, signal recogni 91.3 0.12 4.2E-06 40.9 3.0 25 185-209 6-30 (214)
465 1tf7_A KAIC; homohexamer, hexa 91.2 0.13 4.5E-06 48.3 3.6 29 182-210 277-305 (525)
466 1knx_A Probable HPR(Ser) kinas 91.2 0.094 3.2E-06 48.0 2.5 35 184-219 145-179 (312)
467 2b6h_A ADP-ribosylation factor 91.1 0.14 4.9E-06 40.5 3.2 24 185-208 28-51 (192)
468 2j0v_A RAC-like GTP-binding pr 91.1 0.11 3.7E-06 41.2 2.5 25 185-209 8-32 (212)
469 3e1s_A Exodeoxyribonuclease V, 91.1 0.16 5.5E-06 49.1 4.2 38 178-215 196-236 (574)
470 1xti_A Probable ATP-dependent 91.1 0.32 1.1E-05 41.6 5.6 53 173-225 32-93 (391)
471 3qkt_A DNA double-strand break 91.1 0.096 3.3E-06 46.4 2.4 28 185-213 23-50 (339)
472 2aka_B Dynamin-1; fusion prote 91.1 0.23 8E-06 41.6 4.7 23 187-209 27-49 (299)
473 2qag_B Septin-6, protein NEDD5 91.0 0.12 4E-06 49.2 3.0 28 182-209 36-65 (427)
474 2a5j_A RAS-related protein RAB 91.0 0.13 4.5E-06 40.1 2.8 23 187-209 22-44 (191)
475 2qag_C Septin-7; cell cycle, c 90.9 0.093 3.2E-06 49.2 2.2 29 182-210 25-55 (418)
476 2ffh_A Protein (FFH); SRP54, s 90.9 0.14 4.6E-06 48.4 3.4 26 185-210 97-122 (425)
477 2atx_A Small GTP binding prote 90.9 0.15 5.2E-06 39.6 3.1 23 187-209 19-41 (194)
478 2ew1_A RAS-related protein RAB 90.9 0.15 5E-06 41.3 3.1 23 187-209 27-49 (201)
479 1zbd_A Rabphilin-3A; G protein 90.9 0.14 4.9E-06 40.1 3.0 23 187-209 9-31 (203)
480 1f2t_A RAD50 ABC-ATPase; DNA d 90.8 0.13 4.3E-06 40.8 2.7 24 186-210 24-47 (149)
481 3j16_B RLI1P; ribosome recycli 90.8 0.13 4.3E-06 50.5 3.2 26 185-210 377-402 (608)
482 2h57_A ADP-ribosylation factor 90.8 0.13 4.4E-06 40.0 2.6 26 185-210 20-45 (190)
483 2fv8_A H6, RHO-related GTP-bin 90.7 0.17 5.7E-06 40.3 3.3 24 186-209 25-48 (207)
484 2a5y_B CED-4; apoptosis; HET: 90.6 0.28 9.6E-06 46.1 5.2 22 187-208 153-174 (549)
485 2x77_A ADP-ribosylation factor 90.6 0.13 4.6E-06 39.7 2.6 23 185-207 21-43 (189)
486 3lxw_A GTPase IMAP family memb 90.6 0.13 4.5E-06 43.4 2.7 24 185-208 20-43 (247)
487 2fu5_C RAS-related protein RAB 90.5 0.093 3.2E-06 40.2 1.6 22 187-208 9-30 (183)
488 2il1_A RAB12; G-protein, GDP, 90.5 0.15 5.1E-06 40.1 2.8 22 187-208 27-48 (192)
489 3dm5_A SRP54, signal recogniti 90.5 0.15 5.2E-06 48.6 3.4 33 186-218 100-137 (443)
490 2j9r_A Thymidine kinase; TK1, 90.5 0.17 5.7E-06 44.2 3.3 26 185-210 27-52 (214)
491 2oca_A DAR protein, ATP-depend 90.5 0.14 4.9E-06 46.4 3.0 53 173-225 115-174 (510)
492 1gwn_A RHO-related GTP-binding 90.5 0.18 6.2E-06 40.7 3.3 24 186-209 28-51 (205)
493 2v3c_C SRP54, signal recogniti 90.4 0.14 4.9E-06 48.0 3.1 24 187-210 100-123 (432)
494 2gco_A H9, RHO-related GTP-bin 90.4 0.19 6.4E-06 39.8 3.3 23 187-209 26-48 (201)
495 2hup_A RAS-related protein RAB 90.4 0.17 5.9E-06 40.2 3.1 23 187-209 30-52 (201)
496 2xxa_A Signal recognition part 90.4 0.17 5.8E-06 47.5 3.6 32 187-218 101-138 (433)
497 2o52_A RAS-related protein RAB 90.4 0.18 6.1E-06 40.0 3.2 23 186-208 25-47 (200)
498 3qf7_A RAD50; ABC-ATPase, ATPa 90.3 0.14 4.6E-06 46.4 2.7 25 185-210 23-47 (365)
499 4bas_A ADP-ribosylation factor 90.2 0.17 5.7E-06 39.2 2.8 24 185-208 16-39 (199)
500 3cnl_A YLQF, putative uncharac 90.2 0.25 8.7E-06 42.8 4.2 58 150-209 46-122 (262)
No 1
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A
Probab=99.89 E-value=2.5e-23 Score=165.89 Aligned_cols=94 Identities=22% Similarity=0.507 Sum_probs=86.8
Q ss_pred CCCCCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecC-eE
Q 024881 75 PANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDED-QL 153 (261)
Q Consensus 75 ~~~t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~-~l 153 (261)
-+.+++|.|+|++.+|+|+|+||..+.+++|||.|+++.++|+|++++++++ ++ |+||++|+++||+|+|+|+ .|
T Consensus 13 G~~~~~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~~~~l~v~~kg~~~~---~~-g~L~~~I~~deS~w~i~~~~~i 88 (121)
T 3qor_A 13 GADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAI---ID-GELYNEVKVEESSWLIADGAVV 88 (121)
T ss_dssp SCBCSSCEEEECSSEEEEEEECCCSSCCCGGGEEEEEETTEEEEEETTSCCS---EE-EEBSSCBCGGGCEEEEETTTEE
T ss_pred CCcCCCEEEEEccceEEEEEECCCCCcccccceEEEEEcCEEEEEEcCcceE---Ee-ccccccccccccEEEEcCCCEE
Confidence 3456799999999999999999995558999999999999999999998776 89 9999999999999999994 99
Q ss_pred EEEEEecCCCCCCcccccchhHHHHH
Q 024881 154 VINLKKQDPELKWPDIVESWESLTAG 179 (261)
Q Consensus 154 vv~L~K~d~~m~Wp~~~e~We~l~~g 179 (261)
+|+|+|.+. |+| |++|++|
T Consensus 89 ~i~L~K~~~-~~~------W~~L~~~ 107 (121)
T 3qor_A 89 TVHLEKINK-MEW------WSRLVSS 107 (121)
T ss_dssp EEEEEBSSS-SCC------CSCSBTT
T ss_pred EEEEEECCC-CCC------ChhhhcC
Confidence 999999998 999 9999876
No 2
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4
Probab=99.86 E-value=7.5e-22 Score=158.06 Aligned_cols=93 Identities=22% Similarity=0.525 Sum_probs=85.6
Q ss_pred CCCCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecC-eEE
Q 024881 76 ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDED-QLV 154 (261)
Q Consensus 76 ~~t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~-~lv 154 (261)
+.+++|.|+|++.+|.|+|+||..+.+++||+.|+++.++|+|++++++++ ++ |+||++|+|+||.|+++++ +|+
T Consensus 5 ~~~~~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~~~~l~v~~kg~~~~---~~-~~L~~~I~~e~s~w~i~~~k~v~ 80 (131)
T 1wfi_A 5 SSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPV---VD-GELYNEVKVEESSWLIEDGKVVT 80 (131)
T ss_dssp SSCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEETTSCCS---BC-SCBSSCBCSTTCEEEEETTTEEE
T ss_pred CCCCcEEEEecCCEEEEEEECCCCCcccccceEEEEeCCEEEEEECCceEE---Ee-cccccccccccCEEEEcCCCEEE
Confidence 346799999999999999999985559999999999999999999998766 88 9999999999999999995 899
Q ss_pred EEEEecCCCCCCcccccchhHHHHH
Q 024881 155 INLKKQDPELKWPDIVESWESLTAG 179 (261)
Q Consensus 155 v~L~K~d~~m~Wp~~~e~We~l~~g 179 (261)
|+|+|.++ ++| |++|++|
T Consensus 81 i~L~K~~~-~~~------W~~L~~~ 98 (131)
T 1wfi_A 81 VHLEKINK-MEW------WNRLVTS 98 (131)
T ss_dssp EEEEBSSS-CCC------CSCSBSS
T ss_pred EEEEECCC-CCC------ChhhhcC
Confidence 99999998 899 9999876
No 3
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}
Probab=99.83 E-value=8.1e-21 Score=158.17 Aligned_cols=95 Identities=19% Similarity=0.360 Sum_probs=85.2
Q ss_pred CCCCCCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCe-
Q 024881 74 IPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQ- 152 (261)
Q Consensus 74 ~~~~t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~- 152 (261)
.+..+++|.|+|++.+|.|+|+||. ++++|||.|+++.++|+|+++++ ++ ++ |+||++|+++||.|+|+++.
T Consensus 9 ~~~~~~~y~W~Qt~~eV~v~I~lp~--~~~~kdv~V~i~~~~L~v~~kg~-~~---l~-g~L~~~I~~eeS~w~i~~~k~ 81 (157)
T 2rh0_A 9 VPCGTPWGQWYQTLEEVFIEVQVPP--GTRAQDIQCGLQSRHVALAVGGR-EI---LK-GKLFDSTIADEGTWTLEDRKM 81 (157)
T ss_dssp CCEECSSEEEEECSSEEEEEEECCT--TCCGGGEEEEECSSEEEEEETTE-EE---EE-EEBSSCBCGGGCEEEEECCCE
T ss_pred ccCCCCcEEEEecCCEEEEEEECCC--CCcccceEEEEecCEEEEEECCE-EE---Ee-eccccccCccccEEEEcCCcE
Confidence 3456789999999999999999998 68999999999999999999987 34 89 99999999999999999965
Q ss_pred EEEEEEecCCC-CCCcccccchhHHHHHHH
Q 024881 153 LVINLKKQDPE-LKWPDIVESWESLTAGSM 181 (261)
Q Consensus 153 lvv~L~K~d~~-m~Wp~~~e~We~l~~g~~ 181 (261)
|+|+|+|.+.+ |+| |++|++|-.
T Consensus 82 v~I~L~K~~~~~~~~------W~~L~k~~~ 105 (157)
T 2rh0_A 82 VRIVLTKTKRDAANC------WTSLLESEY 105 (157)
T ss_dssp EEEEEEBSSCSTTCC------CSEEETTEE
T ss_pred EEEEEEEcCCCcCCc------ChhhhcCCC
Confidence 99999999864 789 999987643
No 4
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4
Probab=99.81 E-value=3.7e-20 Score=147.27 Aligned_cols=93 Identities=22% Similarity=0.474 Sum_probs=80.4
Q ss_pred CCCCceEEcccCceEEEEEecCCcccc-cccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCe-E
Q 024881 76 ANTSQYEFSDGSAEIELRLQLGSLEIQ-SSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQ-L 153 (261)
Q Consensus 76 ~~t~~Y~wTqtl~EvEvrlpl~~~~~~-~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~-l 153 (261)
+.+++|.|+|++.+|.|+|+||. ++ ++||+.|+++.++|+|++++...-..+++ ++||++|+|+||.|+++++. |
T Consensus 17 ~~~~~y~W~Qt~~~V~i~I~lp~--~~~~~kdv~V~i~~~~l~v~~~~~~~~~~~~~-~~L~~~I~~e~S~w~i~~~k~v 93 (124)
T 1wgv_A 17 AVRENYTWSQDYTDLEVRVPVPK--HVVKGKQVSVALSSSSIRVAMLEENGERVLME-GKLTHKINTESSLWSLEPGKCV 93 (124)
T ss_dssp BCCSSCEEEEETTEEEEEEECCT--TCCSGGGEEEEECSSEEEEEEECSSSEEEEEE-EEBSSCBCTTTCEEEECTTSEE
T ss_pred CcCCcEEEEEcccEEEEEEEcCC--CCCchhheEEEEEcCEEEEEEEccCCCceEEc-ccccCcCCCcCCEEEEeCCCEE
Confidence 34679999999999999999998 56 99999999999999999975322223488 99999999999999999965 9
Q ss_pred EEEEEecCCCCCCcccccchhHHHHH
Q 024881 154 VINLKKQDPELKWPDIVESWESLTAG 179 (261)
Q Consensus 154 vv~L~K~d~~m~Wp~~~e~We~l~~g 179 (261)
+|+|+|.+ ++| |++|++|
T Consensus 94 ~i~L~K~~--~~~------W~~L~~~ 111 (124)
T 1wgv_A 94 LVNLSKVG--EYW------WNAILEG 111 (124)
T ss_dssp EEEECBSS--SCC------CSCSBTT
T ss_pred EEEEEECC--CCC------CcCcccC
Confidence 99999985 689 9999865
No 5
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}
Probab=99.80 E-value=3.3e-20 Score=149.07 Aligned_cols=89 Identities=22% Similarity=0.477 Sum_probs=77.8
Q ss_pred CCCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEE
Q 024881 77 NTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVIN 156 (261)
Q Consensus 77 ~t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~ 156 (261)
.+++|.|+|+..+|.|+|+||. +++++|+.|+++.++|+|+++|++ + ++ |+||++|+|++|.|+++++.|+|+
T Consensus 3 ~~~~y~W~Qt~~~V~i~I~lp~--~~~~kdv~V~i~~~~l~v~~~g~~-~---~~-~~L~~~I~~e~S~w~i~~~kv~i~ 75 (131)
T 2o30_A 3 SEAKYTWDQELNEINIQFPVTG--DADSSAIKIRMVGKKICVKNQGEI-V---ID-GELLHEVDVSSLWWVINGDVVDVN 75 (131)
T ss_dssp --CCCEEEEETTEEEEEEECC-----CCSCEEEEEETTEEEEEETTEE-E---EE-EEBSSCEEEEEEEEEEETTEEEEE
T ss_pred CCCcEEEEecCCEEEEEEECCC--CCCccceEEEEECCEEEEEECCEe-e---Ec-cccccccccccCEEEEeCCEEEEE
Confidence 4679999999999999999998 689999999999999999999875 4 89 999999999999999999889999
Q ss_pred EEecCCCCCCcccccchhHHHHHH
Q 024881 157 LKKQDPELKWPDIVESWESLTAGS 180 (261)
Q Consensus 157 L~K~d~~m~Wp~~~e~We~l~~g~ 180 (261)
|+|. +++| |++|++|=
T Consensus 76 L~K~--~~~~------W~~L~~~~ 91 (131)
T 2o30_A 76 VTKK--RNEW------WDSLLVGS 91 (131)
T ss_dssp EEES--SCCC------CSCSBC--
T ss_pred EEEC--CCCC------CccccCCC
Confidence 9999 4899 99998663
No 6
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.74 E-value=2.3e-18 Score=136.92 Aligned_cols=72 Identities=19% Similarity=0.169 Sum_probs=68.7
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcccC
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEP 257 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~~ 257 (261)
+.+|+|+|+|||||||+|+.||++|||.|+|+|+++++..|.++.++|...|++.||++|.+++.++....+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 76 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCKLDN 76 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCChhhHHHHhCHHHHHHHHHHHHHHHHhcCC
Confidence 668999999999999999999999999999999999999999999999999999999999999999986544
No 7
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=4e-18 Score=139.20 Aligned_cols=86 Identities=17% Similarity=0.118 Sum_probs=69.7
Q ss_pred chhHHHHHHH-hhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHH
Q 024881 172 SWESLTAGSM-QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLE 250 (261)
Q Consensus 172 ~We~l~~g~~-~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLe 250 (261)
+|+....++. ++-+|..|+|+|+|||||||+|+.||+.|||.++|+|+++++..|.+|.++|.+.|++.||++|.++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g~~i~~~~~~~~~~~~~~~e~~~l~ 89 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHKTVGELFTERGEAGFRELERNMLH 89 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhCCcHHHHHHhcChHHHHHHHHHHHH
Confidence 3455555555 344678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccC
Q 024881 251 SLIMFEP 257 (261)
Q Consensus 251 els~~~~ 257 (261)
++....+
T Consensus 90 ~l~~~~~ 96 (199)
T 3vaa_A 90 EVAEFEN 96 (199)
T ss_dssp HHTTCSS
T ss_pred HHhhcCC
Confidence 9986544
No 8
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.72 E-value=4.4e-18 Score=149.02 Aligned_cols=77 Identities=23% Similarity=0.309 Sum_probs=72.4
Q ss_pred HHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh-CCCHHHHHHhhCchhHHhhHHHHHHHHhcc
Q 024881 179 GSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA-KQTIDSWMLAEGSDSVVNGECDVLESLIMF 255 (261)
Q Consensus 179 g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a-gkSI~eIFaeeGE~~FRelEs~VLeels~~ 255 (261)
.+.+.|+|.+|+|+|+||+||||+|+.||+.|||.|+|+|+++++.. |++|.+||+..||+.||++|.++++++...
T Consensus 41 ~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~ 118 (250)
T 3nwj_A 41 EVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLM 118 (250)
T ss_dssp TTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTTSCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcCccHHHHHHHhCcHHHHHHHHHHHHHHHhh
Confidence 33566779999999999999999999999999999999999999999 999999999999999999999999999865
No 9
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.5e-17 Score=129.99 Aligned_cols=98 Identities=14% Similarity=0.197 Sum_probs=85.3
Q ss_pred CCCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEE
Q 024881 77 NTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVIN 156 (261)
Q Consensus 77 ~t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~ 156 (261)
...+|.|.|+.++|.|+|+++..+....+|+.|+++.++|.|.+++.+.....++.++||++|.|++|.|.+.++.|+|+
T Consensus 19 ~~~~y~W~Qt~~~V~i~I~l~~~~~~~~~~v~V~~~~~~l~v~~~~~~~~~y~~~~~~L~~~I~~e~S~~~v~~~kVei~ 98 (127)
T 1x5m_A 19 KISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLIL 98 (127)
T ss_dssp ECCSCEEEEETTEEEEEEECTTTTTSCTTSEEEEECSSEEEEEECSCSSSCEEEEEECBSSCCCTTTCEEEEETTEEEEE
T ss_pred CccEEEEEcCCCEEEEEEEeCCCCcCCccccEEEEEcCEEEEEEEcCCCCcEEEEhHHhcCccCcccCEEEEeCCEEEEE
Confidence 44599999999999999999985555899999999999999999876544445785579999999999999999999999
Q ss_pred EEecCCCCCCcccccchhHHHHHHH
Q 024881 157 LKKQDPELKWPDIVESWESLTAGSM 181 (261)
Q Consensus 157 L~K~d~~m~Wp~~~e~We~l~~g~~ 181 (261)
|+|.++ +.| |++|.++-.
T Consensus 99 L~K~~~-~~~------W~~L~~~~~ 116 (127)
T 1x5m_A 99 CRKKVE-NTR------WDYLTQVEK 116 (127)
T ss_dssp EECSSS-SCC------CSSSBHHHH
T ss_pred EEECCC-CCC------CCccccccc
Confidence 999998 778 899887644
No 10
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.72 E-value=1.2e-17 Score=131.75 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=66.9
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcccC
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEP 257 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~~ 257 (261)
.+|+|+|+|||||||||+.||++|||+++|+|+++++..|.++.++|...|++.||++|.++|.++....+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 78 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNLIDELKTLKT 78 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHTCHHHHHHHHHHHHHHHHTCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCC
Confidence 37999999999999999999999999999999999999999999999999999999999999999875444
No 11
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.66 E-value=1.2e-16 Score=127.03 Aligned_cols=69 Identities=17% Similarity=0.136 Sum_probs=65.7
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhccc
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFE 256 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~ 256 (261)
+|+|+|+|||||||+|+.||++||+.|+|+|+++++..|.++.++|.+.|++.||++|.++++++....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~ 74 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFSSCE 74 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcCCCHHHHHHHcCHHHHHHHHHHHHHHHHccC
Confidence 799999999999999999999999999999999999999999999999999999999999999887543
No 12
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Probab=99.63 E-value=8e-16 Score=113.98 Aligned_cols=87 Identities=21% Similarity=0.324 Sum_probs=75.5
Q ss_pred CceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEEEE
Q 024881 79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK 158 (261)
Q Consensus 79 ~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~ 158 (261)
.+|.|.|+.++|.|+|++|+ ...+|+.|+++.++|+|.+++.+.-.-.++ ++||++|.|++|.|.+.+..|.|.|+
T Consensus 3 ~~~~W~Qt~~~V~v~i~~~~---v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~-~~L~~~I~~~~s~~~~~~~~l~i~L~ 78 (92)
T 2xcm_C 3 YRHEYYQKPEEVVVTVFAKG---IPKQNVNIDFGEQILSVVIEVPGEDAYYLQ-PRLFGKIIPDKCKYEVLSTKIEICLA 78 (92)
T ss_dssp SEEEEEEETTEEEEEEECCS---CCGGGEEEEECSSBEEEEECCTTSCCEEEC-CBBSSCBCGGGCEEEECSSCEEEEEE
T ss_pred ccccEEeCCCEEEEEEEECC---CChHHeEEEEECCEEEEEEEcCCCcEEEEe-eEcCCccCchhEEEEEECCEEEEEEE
Confidence 48999999999999999986 678999999999999999986432223377 89999999999999999999999999
Q ss_pred ecCCCCCCcccccchhHHH
Q 024881 159 KQDPELKWPDIVESWESLT 177 (261)
Q Consensus 159 K~d~~m~Wp~~~e~We~l~ 177 (261)
|.++ + | |++|.
T Consensus 79 K~~~-~-~------W~~L~ 89 (92)
T 2xcm_C 79 KADI-I-T------WASLE 89 (92)
T ss_dssp BSSS-C-C------CSCSB
T ss_pred cCCC-C-c------chhcc
Confidence 9998 6 6 66654
No 13
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.63 E-value=3.9e-16 Score=124.32 Aligned_cols=71 Identities=21% Similarity=0.223 Sum_probs=66.4
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhccc
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFE 256 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~ 256 (261)
+..|.|+|++||||||+|+.||++||++++|+|+++++..|.+++++|.++|+..|+++|.++++++....
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 72 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADH 72 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHHhcC
Confidence 45699999999999999999999999999999999999999999999999999999999999999886543
No 14
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.61 E-value=9.5e-16 Score=120.27 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=68.1
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcccC
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEP 257 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~~ 257 (261)
+|..|.|+|+|||||||+++.||..||+.++|+|+++++..|+.+..+|...|++.||+.|..++.++....+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~~~i~~i~~~~g~~~~~~~~~~~l~~l~~~~~ 75 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQG 75 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhCcCHHHHHHHHhHHHHHHHHHHHHHHHHhCCC
Confidence 4678999999999999999999999999999999999999999999999999999999999999999876544
No 15
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=99.60 E-value=2.7e-15 Score=116.08 Aligned_cols=91 Identities=18% Similarity=0.321 Sum_probs=78.1
Q ss_pred CCCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEE
Q 024881 77 NTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVIN 156 (261)
Q Consensus 77 ~t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~ 156 (261)
+..+|.|.|+..+|.|+|++|+ .+.+|+.|+++.++|+|.++..+.-.-.++ ++||++|.|++|.|.+++..|.|.
T Consensus 8 ~~~~~~W~Qt~~~V~v~i~l~~---v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~-~~L~~~I~~e~s~~~~~~~~l~i~ 83 (114)
T 1rl1_A 8 SKIKYDWYQTESQVVITLMIKN---VQKNDVNVEFSEKELSALVKLPSGEDYNLK-LELLHPIIPEQSTFKVLSTKIEIK 83 (114)
T ss_dssp CCCCEEEEECSSEEEEEECCCS---CCGGGEEEECSSSCEEEEEECTTSSEEEEE-ECBSSCCCGGGEEEEECSSSEEEE
T ss_pred CCCCccEEeCCCEEEEEEEeCC---CCHHHCEEEEEcCEEEEEEEeCCCcEEEEE-eeCCCcCCccccEEEEECCEEEEE
Confidence 4458999999999999999996 678999999999999999985422223477 899999999999999999999999
Q ss_pred EEecCCCCCCcccccchhHHHHH
Q 024881 157 LKKQDPELKWPDIVESWESLTAG 179 (261)
Q Consensus 157 L~K~d~~m~Wp~~~e~We~l~~g 179 (261)
|+|.++ + | |++|.++
T Consensus 84 L~K~~~-~-~------W~~L~~~ 98 (114)
T 1rl1_A 84 LKKPEA-V-R------WEKLEGQ 98 (114)
T ss_dssp EECSSC-C-C------CSSSBTT
T ss_pred EEcCCC-C-c------Ccccccc
Confidence 999998 5 7 7777654
No 16
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.59 E-value=2.5e-15 Score=117.33 Aligned_cols=70 Identities=20% Similarity=0.157 Sum_probs=65.8
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhccc
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFE 256 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~ 256 (261)
+.|.|+|++||||||+|+.||+.|||.++|+|+++.+..|..+.+++...|++.|+++|.+++.++....
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 70 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREGLSIPQIFEKKGEAYFRKLEFEVLKDLSEKE 70 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHSCHHHHHHHHHHHHHHHTTSS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHhccC
Confidence 4799999999999999999999999999999999999999999999999999999999999999887433
No 17
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.56 E-value=3.3e-15 Score=116.81 Aligned_cols=67 Identities=27% Similarity=0.343 Sum_probs=64.2
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLI 253 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels 253 (261)
..|+|+|++||||||+|+.||++|||.++|+|+++++..|.++.++|.+.|++.|+++|.++++++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEALQAVA 69 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHhCCCHHHHHHHcCHHHHHHHHHHHHHHhh
Confidence 4699999999999999999999999999999999999999999999999999999999999999876
No 18
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2
Probab=99.50 E-value=3e-14 Score=113.59 Aligned_cols=87 Identities=23% Similarity=0.303 Sum_probs=76.1
Q ss_pred ceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEcc-CCcceeeeecccccCCCCCCceeeEEecCeEEEEEE
Q 024881 80 QYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNR-SGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK 158 (261)
Q Consensus 80 ~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~-~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~ 158 (261)
+|.|.|+..+|.|+|+++. ++|+.|+++.++|.|.+++ ..+-.-.++ ++||++|+|++|.|.+.+..|.|+|+
T Consensus 5 ~~~W~Qt~~~V~ltI~~~~-----~~~~~V~~~~~~l~~~~~~~~~~~~y~~~-l~L~~~I~~e~S~~~v~~~kiei~L~ 78 (125)
T 1ejf_A 5 SAKWYDRRDYVFIEFCVED-----SKDVNVNFEKSKLTFSCLGGSDNFKHLNE-IDLFHCIDPNDSKHKRTDRSILCCLR 78 (125)
T ss_dssp CEEEEECSSEEEEEECCTT-----EEEEEEEEETTEEEEEEEETTTTEEEEEE-EEBSSCEEEEEEEEEECSSCEEEEEE
T ss_pred ceeEEeCCCEEEEEEEecC-----CCceEEEEECCEEEEEEEeCCCCceEEEE-EEccceeccccCEEEECCCEEEEEEE
Confidence 7999999999999999998 3899999999999999874 211223377 89999999999999999999999999
Q ss_pred ecCCCCCCcccccchhHHHHH
Q 024881 159 KQDPELKWPDIVESWESLTAG 179 (261)
Q Consensus 159 K~d~~m~Wp~~~e~We~l~~g 179 (261)
|.++ ++| |++|+++
T Consensus 79 K~~~-~~~------W~rL~~~ 92 (125)
T 1ejf_A 79 KGES-GQS------WPRLTKE 92 (125)
T ss_dssp ESST-TCC------CSSSBSS
T ss_pred ECCC-CCC------CCceecC
Confidence 9987 889 9998765
No 19
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=99.43 E-value=3.8e-13 Score=110.03 Aligned_cols=88 Identities=10% Similarity=0.120 Sum_probs=74.8
Q ss_pred CCCCceEEccc-CceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcc------------eeeeecccccCCCCCC
Q 024881 76 ANTSQYEFSDG-SAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSF------------ITLIETNQLFDKIKPT 142 (261)
Q Consensus 76 ~~t~~Y~wTqt-l~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~------------~tlId~g~L~~kIk~~ 142 (261)
....+|.|.|+ .++|.|+|.++. ...+|+.|+++.++|+|.++..+.- .-.++ .+||++|.|+
T Consensus 17 ~~~~r~~W~Qt~~~~V~vtI~~k~---v~~~~v~V~f~~~~l~v~~~~~~~~~l~~~~a~g~~~~y~~~-~~L~~~I~pe 92 (134)
T 1wh0_A 17 LAFVKNDSYEKGPDSVVVHVYVKE---ICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQ-VKLRNLIEPE 92 (134)
T ss_dssp ESCCCEEEEEETTTEEEEEEECCS---BCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEE-EEBSSCEEEE
T ss_pred ccCCCeEEEcCCCCEEEEEEEeCC---CCcccCEEEEECCEEEEEEEcCCCcccccccccCcceeEEEe-ccccccCCch
Confidence 34569999999 999999999986 6789999999999999999866421 23366 7899999999
Q ss_pred ceeeEEecCeEEEEEEecCCCCCCcc
Q 024881 143 ETIWYIDEDQLVINLKKQDPELKWPD 168 (261)
Q Consensus 143 Et~W~IdD~~lvv~L~K~d~~m~Wp~ 168 (261)
+|.|.+.+..|.|.|+|.++ +.||.
T Consensus 93 ~S~~~v~~~kIeI~L~K~e~-~~W~~ 117 (134)
T 1wh0_A 93 QCTFCFTASRIDICLRKRQS-QRWGG 117 (134)
T ss_dssp EEEEEECSSEEEEEEEESSS-CCCSC
T ss_pred hCEEEEeCCEEEEEEEECCC-Ccccc
Confidence 99999999999999999987 65543
No 20
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.42 E-value=1e-13 Score=109.83 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=61.3
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHHHHHh
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLI 253 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VLeels 253 (261)
.+|+.|+|+|++||||||+|+.||+.||+.++|+|+++.+. .|+.|.++|.. |+..|++.+.+++++..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~l 76 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMER-GDLVPDDLILELIREEL 76 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHh
Confidence 46889999999999999999999999999999999999876 56788999875 99999999988887754
No 21
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.39 E-value=8.4e-14 Score=109.62 Aligned_cols=65 Identities=17% Similarity=0.012 Sum_probs=54.5
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccC--cHHHHHHHhCC--------CHHHHHHhhCchhHHhhHHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLETFAKQ--------TIDSWMLAEGSDSVVNGECDVL 249 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD--TDeLIEq~agk--------SI~eIFaeeGE~~FRelEs~VL 249 (261)
+|..|+|+|+|||||||+|+.||++||+.|++ +|++++...++ ++.++|...|++.||.+|..+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWA 76 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHH
Confidence 57789999999999999999999999998875 99999987764 3445556667899999987764
No 22
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.37 E-value=3.7e-13 Score=111.45 Aligned_cols=69 Identities=14% Similarity=0.087 Sum_probs=62.2
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHHHHHh
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLI 253 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VLeels 253 (261)
.+|+.|+|+|++||||||+|+.||+.|||.++|+|+++++. .|+.|.++|.. |+..|++++.+++.+..
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~-g~~~~~~~~~~~i~~~l 77 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIES-GNFVGDEIVLGLVKEKF 77 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHH-TCCCCHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHC-CCcCCHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999987 68889999875 89999999988887643
No 23
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.37 E-value=5.9e-13 Score=111.64 Aligned_cols=75 Identities=19% Similarity=0.111 Sum_probs=49.9
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCC-H-HHHHHhhCchh--HH-----------------
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT-I-DSWMLAEGSDS--VV----------------- 242 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkS-I-~eIFaeeGE~~--FR----------------- 242 (261)
++..-|.|.|+|||||||||+.||++|||+|+| +++++.++.++ + .++|+..||.. |+
T Consensus 4 m~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T 3fdi_A 4 MKQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDI 82 (201)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC---------------------------------CHH
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCHHHHHHHhhhchhHHHHHhccccccccccHHH
Confidence 345679999999999999999999999999999 88888765433 2 37889899987 45
Q ss_pred -hhHHHHHHHHh--cccCCc
Q 024881 243 -NGECDVLESLI--MFEPLL 259 (261)
Q Consensus 243 -elEs~VLeels--~~~~lv 259 (261)
+.|.+++.+++ ...+.|
T Consensus 83 ~~~~~~~i~~la~~~~~~~V 102 (201)
T 3fdi_A 83 AIRQFNFIRKKANEEKESFV 102 (201)
T ss_dssp HHHHHHHHHHHHHTSCCCEE
T ss_pred HHHHHHHHHHHHhhcCCCEE
Confidence 78999999998 655543
No 24
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.36 E-value=2e-14 Score=134.19 Aligned_cols=75 Identities=13% Similarity=0.086 Sum_probs=64.8
Q ss_pred HHHHHHhhc-CC--ceEEEEecCCCchhHHHHHHHHhcCCCc--------------------cCcHHHHHHHhCCCHHHH
Q 024881 176 LTAGSMQLL-KG--TSIFLVGDSTEVNEKVALELAVGLGYTP--------------------LSTKELLETFAKQTIDSW 232 (261)
Q Consensus 176 l~~g~~~lL-kG--~sIyLVGmmGsGKSTVGr~LA~~LgY~f--------------------vDTDeLIEq~agkSI~eI 232 (261)
+.+.+...+ +| .+|+|+|+||+||||+|+.||+.|||.| +|+|++||+.+|++|.+|
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~g~~i~~i 90 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAEM 90 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECCHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHhCccHHHH
Confidence 334444333 34 3599999999999999999999999999 999999999999999999
Q ss_pred HHhhCchhHHhhHHHHHHH
Q 024881 233 MLAEGSDSVVNGECDVLES 251 (261)
Q Consensus 233 FaeeGE~~FRelEs~VLee 251 (261)
|++.|| .||++|.+.+..
T Consensus 91 f~~~ge-~fr~~E~~~~~~ 108 (359)
T 2ga8_A 91 IENQGL-FKDHVEDVNFQP 108 (359)
T ss_dssp HHTTTC-CGGGTTCTTCCC
T ss_pred HHHhcc-cchHHHhhhccc
Confidence 999999 999999876543
No 25
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.34 E-value=7.8e-13 Score=104.92 Aligned_cols=68 Identities=25% Similarity=0.305 Sum_probs=59.2
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHH------HhCCCHHHHHHhhCchhHHhhHHHHHHHH
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET------FAKQTIDSWMLAEGSDSVVNGECDVLESL 252 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq------~agkSI~eIFaeeGE~~FRelEs~VLeel 252 (261)
.+|..|+|+|++||||||+|+.||+.||+.++|+|+++.+ ..|+.|.++|. +|+..|+++..+.+.+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~ 80 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIME-KGQLVPLETVLDMLRDA 80 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHH-cCCcCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999988 45778889987 69988888776666554
No 26
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.33 E-value=5e-13 Score=108.38 Aligned_cols=90 Identities=16% Similarity=0.308 Sum_probs=72.3
Q ss_pred CCceEEcccCce-------EEEEEecCCcccccccceEEEeeCCEEEEEEccCC------cceeeeecccccCCCCCCce
Q 024881 78 TSQYEFSDGSAE-------IELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSG------SFITLIETNQLFDKIKPTET 144 (261)
Q Consensus 78 t~~Y~wTqtl~E-------vEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~------~~~tlId~g~L~~kIk~~Et 144 (261)
++.|.|.|+.++ |.|+|+++. .+|+.|+++.++|.|.+++.+ .-.-.++ .+||++|.|++|
T Consensus 6 ~p~~~W~Q~~~~~~~~k~~V~ltI~~~~-----~~~~~V~~~~~~l~~~~~~~~~~g~~~~~~y~~~-l~L~~~Idpe~S 79 (134)
T 2cg9_X 6 NPQVAWAQRSSTTDPERNYVLITVSIAD-----CDAPELTIKPSYIELKAQSKPHVGDENVHHYQLH-IDLYKEIIPEKT 79 (134)
T ss_dssp -----CBCCCEEECCCSSEEEEECCCSS-----EESCCCCBCSSEEEECCEEC-------CEEBCEE-EECSSCCCSSSE
T ss_pred CCCEEEEeCCCCcCCcCCEEEEEEEecC-----CCceEEEEECCEEEEEEecccccCCccCceEEEE-EEChhhcccccc
Confidence 468999999999 999999988 259999999999999988754 1223477 799999999999
Q ss_pred eeEEecCe-EEEEEEecCCCCCCcccccchhHHHHH
Q 024881 145 IWYIDEDQ-LVINLKKQDPELKWPDIVESWESLTAG 179 (261)
Q Consensus 145 ~W~IdD~~-lvv~L~K~d~~m~Wp~~~e~We~l~~g 179 (261)
.|.+.+.. |.|.|+|.++++.| |++|+++
T Consensus 80 ~~~v~~~~~vei~L~K~~~~~~~------W~rL~k~ 109 (134)
T 2cg9_X 80 MHKVANGQHYFLKLYKKDLESEY------WPRLTKE 109 (134)
T ss_dssp EEEECCC--CEEEEEECSSSSCC------CSCSSSS
T ss_pred EEEECCCEEEEEEEEECCCCCCC------CCceecC
Confidence 99999987 99999999966889 9998865
No 27
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.33 E-value=7.9e-13 Score=108.80 Aligned_cols=69 Identities=13% Similarity=0.116 Sum_probs=61.1
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLIM 254 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VLeels~ 254 (261)
+|+.|+|+|+|||||||+|+.||+.||+.++|+|+++.+. .|+.|.++|. +|+..|++++.+++.+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~l~~~l~ 77 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMD-QGGLVSDDIMVNMIKDELT 77 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHH-CCCcCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999976 5677888886 6888999999888877653
No 28
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.31 E-value=9.8e-13 Score=110.51 Aligned_cols=56 Identities=11% Similarity=0.039 Sum_probs=52.7
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV 242 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FR 242 (261)
..|.|+|+|||||||||+.||+.||++++|+|+++++..+..+.+|++.-|++.|+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~ 68 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVKEKLVELFGGSVLE 68 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHHHHHHHHHHhChhhcC
Confidence 46999999999999999999999999999999999999999999999999998764
No 29
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.29 E-value=2.7e-12 Score=102.05 Aligned_cols=66 Identities=26% Similarity=0.263 Sum_probs=56.4
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh------CCCHHHHHHhhCchhHHhhHHHHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLES 251 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a------gkSI~eIFaeeGE~~FRelEs~VLee 251 (261)
++..|+|+|++||||||+|+.||+.||+.++|+|+++.+.. |+.|.++|. +|+..|+++....+.+
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 82 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIME-RGDLVPSGIVLELLKE 82 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHH-TTCCCCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHH-cCCcCCHHHHHHHHHH
Confidence 57789999999999999999999999999999999998766 677888886 5888787765555544
No 30
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.28 E-value=7e-13 Score=107.23 Aligned_cols=69 Identities=19% Similarity=0.240 Sum_probs=48.7
Q ss_pred HhhcCCceEEEEecCCCchhHHHHHHHHh-cCCCccCcHHHHHHHhCCCHHHHHHhhCchhHH--hhHHHHHHHH
Q 024881 181 MQLLKGTSIFLVGDSTEVNEKVALELAVG-LGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV--NGECDVLESL 252 (261)
Q Consensus 181 ~~lLkG~sIyLVGmmGsGKSTVGr~LA~~-LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FR--elEs~VLeel 252 (261)
+...+|.+|+|+|+|||||||+|+.||+. +||.++|+|+++++. .+.+.|.++++..|+ +.|..+++.+
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~---~~~~~~~~~~~~~~~~r~~~~~~~~~l 76 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN---HFYTEYDTELDTHIIEEKDEDRLLDFM 76 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT---TCSCC------CCCCCHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh---hhhhhHHHHhhhcccCCCCHHHHHHHH
Confidence 34567899999999999999999999999 799999999999985 223334455555554 4455555444
No 31
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.26 E-value=3.3e-12 Score=103.46 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=61.3
Q ss_pred HHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHHHHH
Q 024881 179 GSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESL 252 (261)
Q Consensus 179 g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VLeel 252 (261)
|...-.+|+.|+|+|++||||||+++.||+.||+.++|+|+++.+. .|+.+.++|. +|+..|++.+..++.+.
T Consensus 13 ~~~~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~~~~~ 91 (201)
T 2cdn_A 13 GLVPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLD-AGDLVPSDLTNELVDDR 91 (201)
T ss_dssp ---CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHH-HTCCCCHHHHHHHHHHH
T ss_pred cccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHH-cCCcccHHHHHHHHHHH
Confidence 3445567889999999999999999999999999999999999873 4566778875 68889999988888775
Q ss_pred h
Q 024881 253 I 253 (261)
Q Consensus 253 s 253 (261)
.
T Consensus 92 ~ 92 (201)
T 2cdn_A 92 L 92 (201)
T ss_dssp T
T ss_pred H
Confidence 4
No 32
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.25 E-value=3.7e-12 Score=100.08 Aligned_cols=67 Identities=24% Similarity=0.329 Sum_probs=55.3
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh-------CCCHHHHHHhhCchhHHhhHHHHHHH
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA-------KQTIDSWMLAEGSDSVVNGECDVLES 251 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a-------gkSI~eIFaeeGE~~FRelEs~VLee 251 (261)
++|..|.|+|++||||||+++.||+.||+.++|+|+++++.. |+.+.+++. +|+..|++++...|.+
T Consensus 1 M~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~l~~ 74 (196)
T 1tev_A 1 MKPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIK-EGKIVPVEITISLLKR 74 (196)
T ss_dssp --CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHH-TTCCCCHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHH-CCCcCCHHHHHHHHHH
Confidence 367889999999999999999999999999999999998765 445667765 7988888877666644
No 33
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.22 E-value=6.3e-12 Score=104.15 Aligned_cols=66 Identities=11% Similarity=0.051 Sum_probs=56.6
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh------CCCHHHHHHhhCchhHHhhHHHHHH
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLE 250 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a------gkSI~eIFaeeGE~~FRelEs~VLe 250 (261)
-+++.|+|+|++||||||+++.||+.||+.++|+|+++.+.. |+.|.++|.. |+..|++.+...+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~ 76 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQ-GKLIPDDVMTRLAL 76 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTT-TCCCCHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHc-CCcCCHHHHHHHHH
Confidence 356789999999999999999999999999999999999866 7788888865 88889988776554
No 34
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.22 E-value=7.2e-12 Score=104.75 Aligned_cols=71 Identities=18% Similarity=0.180 Sum_probs=60.5
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHHHHHh
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLI 253 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VLeels 253 (261)
...++++|+|+|++||||||+|+.||+.||+.++|+|+++++. .|+.|.+++. .|+..+++++.+++.+..
T Consensus 12 ~~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~i~~~l 88 (233)
T 1ak2_A 12 ESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMD-AGKLVSDEMVLELIEKNL 88 (233)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHH-CCCcCCHHHHHHHHHHHH
Confidence 3346789999999999999999999999999999999999883 5677888884 588889999988887654
No 35
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.22 E-value=8.7e-12 Score=102.73 Aligned_cols=59 Identities=10% Similarity=0.079 Sum_probs=50.3
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHH------HhCCCHHHHHHhhCchhHHhh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET------FAKQTIDSWMLAEGSDSVVNG 244 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq------~agkSI~eIFaeeGE~~FRel 244 (261)
+++.|+|+|+|||||||+|+.||+.||+.++|+|+++++ ..|+.|.++|. +|+..+++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~-~g~~~~~~~ 68 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFME-KGQLVPDEI 68 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHH-TTCCCCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHH-cCCcCCHHH
Confidence 467899999999999999999999999999999999988 46778889986 476554443
No 36
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.21 E-value=7.4e-12 Score=98.22 Aligned_cols=67 Identities=16% Similarity=0.242 Sum_probs=57.6
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHHHHHh
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLI 253 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VLeels 253 (261)
+..|.|+|++||||||+++.||+.||+.++|+|+++.+. .|+.|.++|. +|+..|++++...|.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~l~~~i 78 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIK-NGEIVPSIVTVKLLKNAI 78 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHH-TTCCCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Confidence 457999999999999999999999999999999998876 3566778886 588888888888877664
No 37
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.19 E-value=1.2e-11 Score=101.26 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=51.6
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh---CCCHHHHHHhhCchhHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSWMLAEGSDSVVN 243 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a---gkSI~eIFaeeGE~~FRe 243 (261)
++..|.|+|++||||||+++.||+ |||.++|+|+++.+.. +..+.+|+...|+..|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~ 63 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAA 63 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCC
Confidence 467899999999999999999999 9999999999999875 456889999999988863
No 38
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.18 E-value=1.8e-11 Score=96.89 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=48.3
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDV 248 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~V 248 (261)
+|..|+|+|+|||||||+++.||+.|||.++|+|.+.+...+. +..++++.+++++..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~-----~~~~~~~~~~~~~~~~ 62 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDG-----LGWSDREWSRRVGATA 62 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHH-----HCCCSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHh-----cCccchHHHHHhhHHH
Confidence 5778999999999999999999999999999999999887652 2334566677776543
No 39
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.18 E-value=4.1e-12 Score=100.97 Aligned_cols=65 Identities=17% Similarity=0.129 Sum_probs=54.8
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhh--HHHHHHHH
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNG--ECDVLESL 252 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRel--Es~VLeel 252 (261)
...++.+|+|+|+||+||||+++.||+.||+.++|+|+++++. ++|...|++.|+.+ |..+++.+
T Consensus 7 ~~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 73 (180)
T 3iij_A 7 EFMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE------QLYDGYDEEYDCPILDEDRVVDEL 73 (180)
T ss_dssp TTCCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH------TCEEEEETTTTEEEECHHHHHHHH
T ss_pred ccccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc------chhhhhhhhhcCccCChHHHHHHH
Confidence 3457889999999999999999999999999999999999987 56778888888776 54455543
No 40
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.17 E-value=7.8e-12 Score=101.97 Aligned_cols=67 Identities=13% Similarity=0.147 Sum_probs=54.3
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH--------hCCCHHHH-------HH----------hhCc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF--------AKQTIDSW-------ML----------AEGS 238 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~--------agkSI~eI-------Fa----------eeGE 238 (261)
|++..|.|+|++||||||+|+.||+.|||.++|+|+++++. .++.|.++ |. .+|+
T Consensus 1 m~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~g~~i~~~g~ 80 (219)
T 2h92_A 1 MKAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNKTEDFAKLVDQTTLDLTYKADKGQCVILDNE 80 (219)
T ss_dssp --CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTSCSCHHHHHHTCCEEEEECTTCCEEEEETTE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhhhHHHHHHHHhccccccccccccceEEeCCc
Confidence 35778999999999999999999999999999999998764 24678777 53 5799
Q ss_pred hhHHhhHHHHHH
Q 024881 239 DSVVNGECDVLE 250 (261)
Q Consensus 239 ~~FRelEs~VLe 250 (261)
..|++++...+.
T Consensus 81 ~~~~~~~~~~~~ 92 (219)
T 2h92_A 81 DVTDFLRNNDVT 92 (219)
T ss_dssp ECGGGSSSSHHH
T ss_pred cchhhcCcHHHH
Confidence 888887655443
No 41
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.16 E-value=9.9e-12 Score=100.31 Aligned_cols=63 Identities=21% Similarity=0.178 Sum_probs=54.9
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh---CCCHHHHHHhhCchhHH---hhHHHHHHH
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSWMLAEGSDSVV---NGECDVLES 251 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a---gkSI~eIFaeeGE~~FR---elEs~VLee 251 (261)
.|.|+|+|||||||+++.||+ +|+.++|+|+++++.. +..+++++...|++.|+ +++...|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~ 71 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLAD 71 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHH
Confidence 699999999999999999999 9999999999999876 45688999999998886 566666654
No 42
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.16 E-value=1.8e-11 Score=97.58 Aligned_cols=61 Identities=20% Similarity=0.137 Sum_probs=48.8
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh-CCCHHHHHHhhCchhHH--hhHHHHH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA-KQTIDSWMLAEGSDSVV--NGECDVL 249 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a-gkSI~eIFaeeGE~~FR--elEs~VL 249 (261)
...|.|+|+|||||||+|+.||+. ||.++|+|+++++.. |.+ .++++.- ++.|+ ++|...|
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~~~~~-~~i~~~~-~~~~~~g~i~~~~l 71 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARARENKE-EELKRLF-PEAVVGGRLDRRAL 71 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHHHHTH-HHHHHHC-GGGEETTEECHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhcCChH-HHHHHHH-HHHHhCCCcCHHHH
Confidence 456999999999999999999999 999999999998887 655 6666655 56655 4444444
No 43
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.14 E-value=3.4e-11 Score=91.80 Aligned_cols=63 Identities=13% Similarity=0.043 Sum_probs=54.4
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCC----------HHHHHHhhCchhHHhhHHHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT----------IDSWMLAEGSDSVVNGECDVLE 250 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkS----------I~eIFaeeGE~~FRelEs~VLe 250 (261)
+.|+|+|++||||||+++.| +.+||.++|+|+++.+..+.. ..+++...|++.|++++.+.|.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 74 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELG 74 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 36999999999999999999 999999999999999876442 5667777899999999888774
No 44
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.13 E-value=2.1e-11 Score=98.87 Aligned_cols=56 Identities=11% Similarity=0.079 Sum_probs=48.3
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh---CCCHHHHHHhhCchhHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSWMLAEGSDSVVN 243 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a---gkSI~eIFaeeGE~~FRe 243 (261)
..|.|+|+|||||||+++.||+ |||.++|+|++..+.. +.++.+|++..|++.|+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~ 61 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTE 61 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC--
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhcc
Confidence 3699999999999999999998 9999999999987753 357889999999988874
No 45
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.10 E-value=2.3e-11 Score=95.79 Aligned_cols=55 Identities=13% Similarity=-0.016 Sum_probs=42.4
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCcc-CcHHHHHHHhCCCHHHHHHhhCchhHHhhH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPL-STKELLETFAKQTIDSWMLAEGSDSVVNGE 245 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv-DTDeLIEq~agkSI~eIFaeeGE~~FRelE 245 (261)
+|+.|+|+|++||||||+|+.||+.||+.++ |.| ..|..|.++|. +|++.|++.|
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~-----~~g~~i~~~~~-~g~~~~~~~~ 59 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPE-----EMGQALRKLTP-GFSGDPQEHP 59 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEECCTH-----HHHHHHHHTST-TCCSCGGGST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchh-----hhHHHHHHhCc-cccchhhhhH
Confidence 6788999999999999999999999999999 753 34567888888 8888888654
No 46
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.07 E-value=1.9e-10 Score=92.78 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=53.7
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH---hCCC----HHHHHHhhCchhHHhhHHHHHHHH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF---AKQT----IDSWMLAEGSDSVVNGECDVLESL 252 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~---agkS----I~eIFaeeGE~~FRelEs~VLeel 252 (261)
+..|.|+|++||||||+++.||+.||+.++|+|+++.+. .|.. +.+++. +|+..|++++...+.+.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~l~~~ 87 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIK-EGQIVPQEITLALLRNA 87 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHH-TTCCCCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHH-cCCcCCHHHHHHHHHHH
Confidence 457999999999999999999999999999999999876 3443 445544 78888888777766554
No 47
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.06 E-value=8.8e-11 Score=92.65 Aligned_cols=65 Identities=17% Similarity=0.054 Sum_probs=52.9
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHH-----HH-HhCCCHHHHHHhhCchhHHhhHHHHHHH
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL-----ET-FAKQTIDSWMLAEGSDSVVNGECDVLES 251 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLI-----Eq-~agkSI~eIFaeeGE~~FRelEs~VLee 251 (261)
.+|..|.|+|++||||||+++.||..+|+.++|+|++. ++ ..|..+.+ .+|+..|+.+|..+.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~ 76 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLND---DDRKPWLQALNDAAFAM 76 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCH---HHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCcCCCc---cccccHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999984 33 45766654 46778899998755433
No 48
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.02 E-value=5.5e-11 Score=95.11 Aligned_cols=63 Identities=22% Similarity=0.180 Sum_probs=51.9
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh------CCC------HH-----------------HHHHhhCc
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQT------ID-----------------SWMLAEGS 238 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a------gkS------I~-----------------eIFaeeGE 238 (261)
.|.|.|++||||||||+.||+.|||+++|+|++.+... |.+ +. ++| .+|+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~ 82 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVL-ADGE 82 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEE-ETTE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEE-ECCe
Confidence 69999999999999999999999999999999998763 553 22 233 4788
Q ss_pred hhHHhhHHHHHHH
Q 024881 239 DSVVNGECDVLES 251 (261)
Q Consensus 239 ~~FRelEs~VLee 251 (261)
..||++|.+.+.+
T Consensus 83 ~v~~~~~~~~~~~ 95 (208)
T 3ake_A 83 DLTSFLHTPEVDR 95 (208)
T ss_dssp ECGGGSSSHHHHH
T ss_pred eCchhhChHHHHH
Confidence 8999888877664
No 49
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.02 E-value=1.6e-10 Score=90.77 Aligned_cols=63 Identities=11% Similarity=-0.006 Sum_probs=48.4
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcC-----CCccCcHHHHHHHh---CC--CHHHHHHhhCchhHHhhHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFA---KQ--TIDSWMLAEGSDSVVNGECDV 248 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg-----Y~fvDTDeLIEq~a---gk--SI~eIFaeeGE~~FRelEs~V 248 (261)
+|+.|+|+|++||||||+++.||+.|| |.++|+|+++.+.. |. ++++++. ..++.++.+|..+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 74 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRK-MDPETQKRIQKMA 74 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSS-CCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHHHhc-CCHHHHHHHHHHH
Confidence 578899999999999999999999999 99999999876543 33 5555543 2355667777654
No 50
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.02 E-value=1.6e-10 Score=96.44 Aligned_cols=66 Identities=5% Similarity=0.039 Sum_probs=55.2
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLI 253 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VLeels 253 (261)
+.|+|+|++||||||+++.||+.||+.++|+|+++.+. .|+.|.+++. +|+-.|+++..+++.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~i~~~l 72 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFID-RGDLVPDDITIPMVLETL 72 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHH-cCCcCcHHHHHHHHHHHH
Confidence 36999999999999999999999999999999999886 4556777764 688788887777666543
No 51
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.00 E-value=1.5e-10 Score=90.19 Aligned_cols=67 Identities=12% Similarity=0.136 Sum_probs=55.2
Q ss_pred ceEEEEecCCCchhHHHHHHHH-hcCCCccCcHHHHHHHhCCCHH--HHHHhhCchhHHhhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAV-GLGYTPLSTKELLETFAKQTID--SWMLAEGSDSVVNGECDVLESLI 253 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~-~LgY~fvDTDeLIEq~agkSI~--eIFaeeGE~~FRelEs~VLeels 253 (261)
..|.|+|++||||||+++.||+ .+||.++|+|.+.+...+.+.. +.+..+++..++++..+++.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 72 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSIL 72 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhCCCccchhhhchhhhhHHHHHHHHHHHHHH
Confidence 4689999999999999999999 7999999999999988875443 23456778888888777777665
No 52
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.00 E-value=3.7e-10 Score=92.76 Aligned_cols=64 Identities=17% Similarity=0.136 Sum_probs=50.9
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLES 251 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VLee 251 (261)
++|+|+|++||||||+++.||+.|||.++|+|+++.+. .|+.|.++|.. |+...+++..+++.+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~i~~ 70 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDA-GKLVTDELVIALVKE 70 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHH-TCCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHC-CCcCCHHHHHHHHHH
Confidence 47999999999999999999999999999999999883 57778888864 554444444444433
No 53
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.99 E-value=2.4e-10 Score=109.12 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=58.4
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCc-----HHHHHHHhCC-CHHHHHHhhCchhHHhhHHHHHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST-----KELLETFAKQ-TIDSWMLAEGSDSVVNGECDVLESL 252 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT-----DeLIEq~agk-SI~eIFaeeGE~~FRelEs~VLeel 252 (261)
.-|+|||+|||||||+|+.||+.||+.++|+ |+++++..|. .+.++|..+|+++|+..|..++..+
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l 107 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAAL 107 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999888766 9999999987 5789999999999998887765554
No 54
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.99 E-value=1.5e-10 Score=107.50 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=59.9
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHH-----HHHHHhCC-CHHHHHHhhCchhHHhhHHHHHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE-----LLETFAKQ-TIDSWMLAEGSDSVVNGECDVLESL 252 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDe-----LIEq~agk-SI~eIFaeeGE~~FRelEs~VLeel 252 (261)
+...|+|||+||+||||+|+.||+.|++.++|+|. ++++..|. ...+||..+|+++||..|..+++.+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l 111 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAAL 111 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHH
Confidence 34579999999999999999999999999988876 88898887 5679999999999999988876665
No 55
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=98.97 E-value=4.6e-10 Score=97.25 Aligned_cols=64 Identities=17% Similarity=0.100 Sum_probs=55.1
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh---CCCHHHHHHhhCchhHH---hhHHHHHHHH
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSWMLAEGSDSVV---NGECDVLESL 252 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a---gkSI~eIFaeeGE~~FR---elEs~VLeel 252 (261)
-|-|+|.||||||||++.|++ +||+++|+|++..++. +..+.+|++.-|++.|. ++..+.|.++
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~ 80 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRAL 80 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHH
Confidence 388999999999999999999 9999999999988776 67899999999999985 3555555554
No 56
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.96 E-value=3.4e-10 Score=96.38 Aligned_cols=78 Identities=13% Similarity=0.026 Sum_probs=62.7
Q ss_pred hhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcC--CCccCcHHH---------HHHHhCCCHHHHHHhhCchhH
Q 024881 173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKEL---------LETFAKQTIDSWMLAEGSDSV 241 (261)
Q Consensus 173 We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg--Y~fvDTDeL---------IEq~agkSI~eIFaeeGE~~F 241 (261)
|..+..+....-+|..|+|+|+|||||||+++.||+.|| |.++|.|.+ |++..|.++.++++. .+
T Consensus 19 ~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~----~~ 94 (253)
T 2p5t_B 19 LRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKD----FA 94 (253)
T ss_dssp HHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHH----HH
T ss_pred HHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhH----HH
Confidence 555666656566788899999999999999999999997 788999998 788889999988764 25
Q ss_pred HhhHHHHHHHHhc
Q 024881 242 VNGECDVLESLIM 254 (261)
Q Consensus 242 RelEs~VLeels~ 254 (261)
++++..+++++..
T Consensus 95 ~~~~~~~~~~~~~ 107 (253)
T 2p5t_B 95 GKMVESLVTKLSS 107 (253)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5666777777654
No 57
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.96 E-value=3.5e-10 Score=96.85 Aligned_cols=64 Identities=13% Similarity=0.078 Sum_probs=56.1
Q ss_pred CCceEEEEecCCCchhHHHHHHHHh---cCCCcc--CcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVG---LGYTPL--STKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIM 254 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~---LgY~fv--DTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~ 254 (261)
++..|+|+|++||||||+|+.||+. +||.++ |.|.+.+...+ |...||..|+.++.+++++...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~------~~~~~e~~~~~~~~~~i~~~l~ 71 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV------WKEKYEEFIKKSTYRLIDSALK 71 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS------CCGGGHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh------hhHHHHHHHHHHHHHHHHHHhh
Confidence 4668999999999999999999998 899998 99999987766 6778999999999888777654
No 58
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.94 E-value=7.6e-11 Score=94.28 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=46.9
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc-CCCccCcHHHH-HHHhCCCHHHHHHhhC
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELL-ETFAKQTIDSWMLAEG 237 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L-gY~fvDTDeLI-Eq~agkSI~eIFaeeG 237 (261)
.+|+.|+|+|+|||||||+++.||+.| ||.++|+++.. +...|+.|.++|...|
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~g~~i~~~~~~~~ 57 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTGKMIDDYLTRKK 57 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHHHHHHHHHHTSSC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcHHHHHHHHHhcCC
Confidence 378899999999999999999999999 79999998876 5666777999997654
No 59
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.93 E-value=8.9e-11 Score=108.78 Aligned_cols=73 Identities=7% Similarity=0.019 Sum_probs=67.5
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHH--------------HHHHhCC-----CHHHH-HHhhCchhHHhh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQ-----TIDSW-MLAEGSDSVVNG 244 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeL--------------IEq~agk-----SI~eI-FaeeGE~~FRel 244 (261)
++..|+|+|+||+||||+|..||++||..+||+|.+ +|+..|. +|.++ ++..+++.|++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~ 118 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSL 118 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHH
Confidence 556799999999999999999999999999999999 8999999 89999 899999999999
Q ss_pred HHHHHHHHhcccC
Q 024881 245 ECDVLESLIMFEP 257 (261)
Q Consensus 245 Es~VLeels~~~~ 257 (261)
+.++++++....+
T Consensus 119 a~~~i~~i~~~g~ 131 (339)
T 3a8t_A 119 AGKAVSEITGRRK 131 (339)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCC
Confidence 9999999976554
No 60
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.93 E-value=4.5e-10 Score=86.82 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=39.4
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHH
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWML 234 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFa 234 (261)
.|+|+|++||||||+++.||++|||.++|.|.+++... .+.++|+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~--~~~~~~~ 47 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS--GNEKLFE 47 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT--CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh--HHHHHHH
Confidence 69999999999999999999999999999999988765 3555553
No 61
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.92 E-value=5.4e-10 Score=93.52 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=38.6
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF 224 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~ 224 (261)
..+|..|.|+|+|||||||+|+.||+.|||.++|+|+++...
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~ 54 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAA 54 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcc
Confidence 357889999999999999999999999999999999999864
No 62
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.91 E-value=1.3e-09 Score=93.87 Aligned_cols=72 Identities=17% Similarity=0.116 Sum_probs=46.9
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHH-HHHHhhCchhH------------------------
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTID-SWMLAEGSDSV------------------------ 241 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~-eIFaeeGE~~F------------------------ 241 (261)
.-|.+.|++||||||||+.||++|||+|+|.|.+-+.+...-++ ++|...+|..+
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSKPSPNDK 94 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHCC---------------------------------------
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhcccccccccccccccc
Confidence 45999999999999999999999999999966655544444354 56766666532
Q ss_pred -------HhhHHHHHHHHhcccCC
Q 024881 242 -------VNGECDVLESLIMFEPL 258 (261)
Q Consensus 242 -------RelEs~VLeels~~~~l 258 (261)
++.|++++.+++...+.
T Consensus 95 ~~~~~~~f~~~~~~i~~la~~~~~ 118 (223)
T 3hdt_A 95 LTSPENLFKFQSEVMRELAESEPC 118 (223)
T ss_dssp ---HHHHHHHHHHHHHHHHHHSCE
T ss_pred cccHHHHHHHHHHHHHHHHhCCCE
Confidence 35678899999876554
No 63
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.91 E-value=9.7e-10 Score=89.37 Aligned_cols=65 Identities=14% Similarity=0.089 Sum_probs=50.4
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESL 252 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VLeel 252 (261)
++|.|+|++||||||+++.||+.+|+.++|+|+++.+. .|+.+.++|.. |+....++..+++.+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~ 71 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQ-GNLVPDEVTIGIVHER 71 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHH-TCCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Confidence 46999999999999999999999999999999999873 44556666644 6555555555554443
No 64
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.89 E-value=1.2e-09 Score=89.16 Aligned_cols=64 Identities=11% Similarity=0.115 Sum_probs=49.2
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHH------HhCCCHHHHHHhhCchhHHhhHHHHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET------FAKQTIDSWMLAEGSDSVVNGECDVLES 251 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq------~agkSI~eIFaeeGE~~FRelEs~VLee 251 (261)
++|.|+|++||||||+++.||+.+|+.++|+|+++.+ ..|+.+.++|. +|+....++..+++.+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~ 70 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYID-KGELVPDEVTIGIVKE 70 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Confidence 4799999999999999999999999999999999987 34555677764 4554455554444433
No 65
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=98.87 E-value=7.9e-09 Score=85.62 Aligned_cols=82 Identities=15% Similarity=0.211 Sum_probs=69.0
Q ss_pred CCceEEcccCceEEEEEecCCcccccccceEEEee-CCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEE
Q 024881 78 TSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDAD-GTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVIN 156 (261)
Q Consensus 78 t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~-~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~ 156 (261)
++.|.|.|+...|-|.|.++. .+++.|+++ .++|.|..++...-.-.++ .+||++|.|+ |.|.+....|.|.
T Consensus 4 ~P~~~W~Qt~~~V~ltI~l~~-----~~~v~V~~~~~~~l~~~~~~~~~~~y~~~-l~L~~~Idpe-S~~~v~~~kIei~ 76 (150)
T 2kmw_A 4 NPEVLWAQRSDKVYLTVALPD-----AKDISVKCEPQGLFSFSALGAQGERFEFS-LELYGKIMTE-YRKNVGLRNIIFS 76 (150)
T ss_dssp CCCEEEEECSSEEEEEECCSS-----EEEEEECCCTTEEEEEEEETTTTEEEEEE-EEBSSCEEEE-EEEEEESSSEEEE
T ss_pred CCcEEEEeCCCEEEEEEEeCC-----CCceEEEEecCCEEEEEEEcCCCceEEEE-eEhhhccccc-ceEEecCCEEEEE
Confidence 358999999999999999988 268999999 8999999884333333477 6899999999 9999999999999
Q ss_pred EEecCCCCCCc
Q 024881 157 LKKQDPELKWP 167 (261)
Q Consensus 157 L~K~d~~m~Wp 167 (261)
|+|.++ ..||
T Consensus 77 L~K~e~-~~W~ 86 (150)
T 2kmw_A 77 IQKEER-SWWT 86 (150)
T ss_dssp EEECCS-SCCS
T ss_pred EEECCC-CcCc
Confidence 999987 4443
No 66
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.84 E-value=2.2e-09 Score=87.46 Aligned_cols=71 Identities=10% Similarity=-0.076 Sum_probs=53.1
Q ss_pred HhhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHH-----H-HhCCCHHHHHHhhCchhHHhhHHHHHHHHhc
Q 024881 181 MQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLE-----T-FAKQTIDSWMLAEGSDSVVNGECDVLESLIM 254 (261)
Q Consensus 181 ~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIE-----q-~agkSI~eIFaeeGE~~FRelEs~VLeels~ 254 (261)
+..-+|..|.|+|+|||||||+++.||..+|+.++|.|++.+ + ..|..+.+ .++...|+.+|..++..+..
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~ 100 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTD---EDRWPWLRSLAEWMDARADA 100 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTTCCCCH---HHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcCCCCCC---cccccHHHHHHHHHHHHHhc
Confidence 444578899999999999999999999999999999999742 2 34555443 34556778888887766554
No 67
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.76 E-value=8.8e-10 Score=86.72 Aligned_cols=52 Identities=19% Similarity=0.045 Sum_probs=43.0
Q ss_pred eEEEEecCCCchhHHHHHHHHhc---CCCccCcHHHHHHHhCCCHHHHHHhhCchh
Q 024881 188 SIFLVGDSTEVNEKVALELAVGL---GYTPLSTKELLETFAKQTIDSWMLAEGSDS 240 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~L---gY~fvDTDeLIEq~agkSI~eIFaeeGE~~ 240 (261)
.|.|.|++||||||+++.||+.| ||.++|+|+..+...|+.+.++|.+ |+-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~i~~~~~~-g~~~ 56 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVGEVLREILLT-EELD 56 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHH-SCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCchHHHHHHHHcC-CCCC
Confidence 58999999999999999999999 9999999976555556667788764 6533
No 68
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.71 E-value=8.1e-09 Score=88.25 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=40.4
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHH------HhCCCH
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET------FAKQTI 229 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq------~agkSI 229 (261)
-+|..|.|+|+|||||||+++.||++|||.++|+++++.. ..|..+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~ 76 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDI 76 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCc
Confidence 3688899999999999999999999999999999999944 446555
No 69
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.71 E-value=2.6e-09 Score=84.94 Aligned_cols=62 Identities=15% Similarity=0.086 Sum_probs=44.6
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc---CCCccCcHHHHHHHhCCCHHHHH-HhhCchhHHhhHH
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL---GYTPLSTKELLETFAKQTIDSWM-LAEGSDSVVNGEC 246 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L---gY~fvDTDeLIEq~agkSI~eIF-aeeGE~~FRelEs 246 (261)
.+|..|.|+|+|||||||+++.||..| ||+++++|..+... +......| .+++++.|++++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 68 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ-GLNKNLGFSPEDREENVRRIAE 68 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT-TTTTTCCSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHH-HHhhccccccccHHHHHHHHHH
Confidence 368899999999999999999999999 99999666443321 11111122 2567788888874
No 70
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.70 E-value=1.6e-09 Score=87.68 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=33.9
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL 221 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLI 221 (261)
++.|.|+|++||||||+++.||+.||+.++|+|+++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~ 53 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALH 53 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCc
Confidence 457999999999999999999999999999999985
No 71
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.70 E-value=9.6e-09 Score=83.59 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=39.9
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTID 230 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~ 230 (261)
+..|.|+|++||||||+++.||+.+||+++|+|+++.+. .|..++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~ 55 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVA 55 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCcc
Confidence 567999999999999999999999999999999999864 466553
No 72
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.69 E-value=1.6e-09 Score=91.70 Aligned_cols=65 Identities=14% Similarity=0.155 Sum_probs=51.4
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCC----------ccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHH-------HHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYT----------PLSTKELLETFAKQTIDSWMLAEGSDSVVNGEC-------DVL 249 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~----------fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs-------~VL 249 (261)
..|.|.|++||||||+|+.||+.||+. ++|+|+++......+++ +...|+-.|+..|+ +.|
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~--~~~~g~~~f~~~~~~d~~~l~~~L 100 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKA--KALKGQFNFDHPDAFDNELILKTL 100 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHH--HHHTTCSCTTSGGGBCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhh--hhccCCCCCCCcchhhHHHHHHHH
Confidence 469999999999999999999999998 69999998643322333 56678877877666 778
Q ss_pred HHHh
Q 024881 250 ESLI 253 (261)
Q Consensus 250 eels 253 (261)
+++.
T Consensus 101 ~~l~ 104 (252)
T 1uj2_A 101 KEIT 104 (252)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8775
No 73
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.68 E-value=1.7e-08 Score=81.01 Aligned_cols=35 Identities=20% Similarity=0.091 Sum_probs=31.9
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcH
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTD 218 (261)
.+|+.|+|+|.+||||||+++.||+.||+.++|+|
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~ 42 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK 42 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 46889999999999999999999999998888773
No 74
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.68 E-value=3.4e-09 Score=84.15 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=43.2
Q ss_pred HhhcCCceEEEEecCCCchhHHHHHHHHhcCCC--ccCcHHHHHHHhCCCHHHHHHhh
Q 024881 181 MQLLKGTSIFLVGDSTEVNEKVALELAVGLGYT--PLSTKELLETFAKQTIDSWMLAE 236 (261)
Q Consensus 181 ~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~--fvDTDeLIEq~agkSI~eIFaee 236 (261)
++.-+|..|.|+|+|||||||+++.||..+++. ++|.|++.+......+..++.++
T Consensus 4 ~~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~~~~~~~~~~~~ 61 (191)
T 1zp6_A 4 TDDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQS 61 (191)
T ss_dssp --CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhhcccccCCccch
Confidence 456678999999999999999999999998776 89999998765544444444433
No 75
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.67 E-value=1.1e-08 Score=80.02 Aligned_cols=38 Identities=11% Similarity=-0.014 Sum_probs=35.1
Q ss_pred eEEEEecCCCchhHHHHHHHHhcC-----CCccCcHHHHHHHh
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFA 225 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~Lg-----Y~fvDTDeLIEq~a 225 (261)
.|+|+|++||||||+++.||++|| +.++|+|+++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~ 45 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATA 45 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHH
Confidence 699999999999999999999999 89999999987655
No 76
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.65 E-value=3e-09 Score=97.63 Aligned_cols=70 Identities=16% Similarity=0.097 Sum_probs=60.0
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCC--------------------HHHHHHhhCchhHHhhHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT--------------------IDSWMLAEGSDSVVNGEC 246 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkS--------------------I~eIFaeeGE~~FRelEs 246 (261)
..|+|+|++|+||||+|+.||+++|+.++|.|.++... |.+ +.+++...+++.|++.+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~-~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a~ 84 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYR-GMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADAL 84 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBT-TCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhc-CCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHHH
Confidence 46999999999999999999999999999999986433 444 456778889999999999
Q ss_pred HHHHHHhcccC
Q 024881 247 DVLESLIMFEP 257 (261)
Q Consensus 247 ~VLeels~~~~ 257 (261)
++++++....+
T Consensus 85 ~~i~~i~~~g~ 95 (323)
T 3crm_A 85 AAMAKATARGR 95 (323)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 99999876544
No 77
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.64 E-value=4.9e-09 Score=90.08 Aligned_cols=66 Identities=8% Similarity=0.013 Sum_probs=48.9
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH-----hCCC--------------HHHHHH-hhCchhHHhhHHH
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF-----AKQT--------------IDSWML-AEGSDSVVNGECD 247 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~-----agkS--------------I~eIFa-eeGE~~FRelEs~ 247 (261)
.|+|+|+|||||||+|+.||+.+||.++|.|++++.. +++. +.++++ .-+++.|++.+.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 82 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLIF 82 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHHH
Confidence 5899999999999999999999999999999986321 1111 112222 3577889998888
Q ss_pred HHHHHhc
Q 024881 248 VLESLIM 254 (261)
Q Consensus 248 VLeels~ 254 (261)
.+ ++..
T Consensus 83 ~i-~~~~ 88 (253)
T 2ze6_A 83 EV-DWRK 88 (253)
T ss_dssp HH-HTTT
T ss_pred HH-HHHh
Confidence 88 6543
No 78
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.62 E-value=8.4e-09 Score=102.15 Aligned_cols=105 Identities=12% Similarity=0.123 Sum_probs=56.6
Q ss_pred ccccCCCCCCceeeEEecCeEEEEEEecCCCCCCcccccchhHHHHHHHhhc-------CCceEEEEecCCCchhHHHHH
Q 024881 133 NQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLL-------KGTSIFLVGDSTEVNEKVALE 205 (261)
Q Consensus 133 g~L~~kIk~~Et~W~IdD~~lvv~L~K~d~~m~Wp~~~e~We~l~~g~~~lL-------kG~sIyLVGmmGsGKSTVGr~ 205 (261)
|.||.+++.+.-+ ..=++.+..+ ..|.. + .++..-.+.+ +|+.|+|+|+|||||||+|+.
T Consensus 5 ~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~----~-~v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~ 71 (630)
T 1x6v_B 5 GSLCKKVKLSNNA-------QNWGMQRATN-VTYQA----H-HVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMA 71 (630)
T ss_dssp ------------------------------------------CCCHHHHHHHSSSSSSCCCEEEEEECSTTSSHHHHHHH
T ss_pred cchhheEEecCcc-------cccccccccc-ccccc----c-CCCHHHHHHHhCCCccCCCCEEEEEeCCCCCHHHHHHH
Confidence 6788888766543 1112334344 67722 1 2333333333 567899999999999999999
Q ss_pred HHHhc---CCCccCcHHHHHHHhCCCHHHHHH-hhCchhHHhhHHHHHHHH
Q 024881 206 LAVGL---GYTPLSTKELLETFAKQTIDSWML-AEGSDSVVNGECDVLESL 252 (261)
Q Consensus 206 LA~~L---gY~fvDTDeLIEq~agkSI~eIFa-eeGE~~FRelEs~VLeel 252 (261)
||++| |+.++++|..+.+ .+..++++|. +++++.||++.. +...+
T Consensus 72 La~~L~~~G~~~v~lDgD~iR-~~L~~~~~fs~~dree~~r~i~e-va~~~ 120 (630)
T 1x6v_B 72 LEEYLVCHGIPCYTLDGDNIR-QGLNKNLGFSPEDREENVRRIAE-VAKLF 120 (630)
T ss_dssp HHHHHHHTTCCEEEESHHHHT-TTTTTTCCSSHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHhcCCeEEEechHHhh-hccCccccCChhhhHHHHHHHHH-HHHHH
Confidence 99999 9999888765554 3566666777 789999999843 44443
No 79
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.62 E-value=2.4e-08 Score=84.86 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=44.0
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLA 235 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFae 235 (261)
+++.|.|.|++||||||+++.||+.+|+.++|+|+++.+. .|+.+.++|.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~ 84 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINE 84 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhc
Confidence 7889999999999999999999999999999999999885 34455566544
No 80
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.57 E-value=5.9e-08 Score=84.70 Aligned_cols=38 Identities=24% Similarity=0.126 Sum_probs=34.7
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a 225 (261)
..|.|+|++||||||+|+.|| .+||.++|+|++..+..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~ 113 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAY 113 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHh
Confidence 469999999999999999999 69999999999977654
No 81
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.56 E-value=1e-08 Score=84.22 Aligned_cols=65 Identities=18% Similarity=0.180 Sum_probs=50.2
Q ss_pred HhhcCCceEEEEecCCCchhHHHHHHHHhcC------CCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHH
Q 024881 181 MQLLKGTSIFLVGDSTEVNEKVALELAVGLG------YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECD 247 (261)
Q Consensus 181 ~~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg------Y~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~ 247 (261)
...-+|..|+|+|+|||||||+++.||+.|+ +.++|.|.+.+...+.- .++.+++++.|++++..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~~~--~~~~~~r~~~~~~~~~~ 90 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDL--GFSEADRNENIRRIAEV 90 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTC--CSSHHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhcccc--CCCHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999997 88999998865443211 23447778888887643
No 82
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.53 E-value=7.6e-08 Score=84.62 Aligned_cols=79 Identities=10% Similarity=0.075 Sum_probs=52.4
Q ss_pred hhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhc--CCCccCcHHHHHHHhCCCHHHHHHhhC-------chhHHh
Q 024881 173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL--GYTPLSTKELLETFAKQTIDSWMLAEG-------SDSVVN 243 (261)
Q Consensus 173 We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L--gY~fvDTDeLIEq~agkSI~eIFaeeG-------E~~FRe 243 (261)
|..+..+....-+|.-|+|+|+|||||||+++.|++.+ ++.+||.|.+-+...+ ..++.+..| +..+++
T Consensus 20 ~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~--~~~~~~~~~~~a~~~~~~~~~~ 97 (287)
T 1gvn_B 20 LEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPN--FDELVKLYEKDVVKHVTPYSNR 97 (287)
T ss_dssp HHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTT--HHHHHHHHGGGCHHHHHHHHHH
T ss_pred HHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchh--hHHHHHHccchhhhhhhHHHHH
Confidence 44444443344467789999999999999999999999 8999999988543322 112222222 245666
Q ss_pred hHHHHHHHHh
Q 024881 244 GECDVLESLI 253 (261)
Q Consensus 244 lEs~VLeels 253 (261)
+..++++++.
T Consensus 98 ~~~~~v~~~l 107 (287)
T 1gvn_B 98 MTEAIISRLS 107 (287)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 83
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.52 E-value=6.5e-09 Score=83.42 Aligned_cols=52 Identities=17% Similarity=0.103 Sum_probs=40.0
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHH----HHhCCCHHHHHHh
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLE----TFAKQTIDSWMLA 235 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIE----q~agkSI~eIFae 235 (261)
-+|+.|+|+|++||||||+++.||+.||..+++++.+.| ...|+.|.++|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~i~~~~~~ 62 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQK 62 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHHHHHHHHHhc
Confidence 368899999999999999999999999887777654433 2234456777754
No 84
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.49 E-value=6.5e-08 Score=78.80 Aligned_cols=39 Identities=26% Similarity=0.246 Sum_probs=35.2
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc---CCC--ccCcHHHHH
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKELLE 222 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTDeLIE 222 (261)
-+|..|+|+|+|||||||+++.||..| |+. ++|.|++.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH 66 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh
Confidence 358889999999999999999999999 777 999998854
No 85
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.49 E-value=6.5e-08 Score=82.56 Aligned_cols=40 Identities=13% Similarity=0.183 Sum_probs=36.2
Q ss_pred ceEEEEecCCCchhHHHHHHHHhc-CCCccCcHHHHHHHhC
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELLETFAK 226 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~L-gY~fvDTDeLIEq~ag 226 (261)
..|+|+|++||||||+++.||+++ ||.++|+|.+.+...+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~~ 43 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMA 43 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhcc
Confidence 469999999999999999999985 9999999988887765
No 86
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.48 E-value=9.5e-08 Score=83.99 Aligned_cols=66 Identities=15% Similarity=0.142 Sum_probs=57.0
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLI 253 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VLeels 253 (261)
+.+-|.|++||||||+++.||+.+|+.++++++++.+. .|+.|.+++. .|+....++..++|++-.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~-~G~lvpdei~~~ll~~~l 80 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMD-EGKLVPDSLIIGLVKERL 80 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHh-hccccccHHHHHHHHHHH
Confidence 46889999999999999999999999999999999874 5667888866 599899999888876644
No 87
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.47 E-value=1.3e-07 Score=79.30 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=36.2
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET 223 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq 223 (261)
++..|.|+|++||||||+++.||+.||+..+|+++++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~ 64 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRE 64 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHH
Confidence 477899999999999999999999999999999888765
No 88
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.45 E-value=3.7e-08 Score=78.75 Aligned_cols=40 Identities=25% Similarity=0.152 Sum_probs=34.4
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcC-----CCccCcHHHHHH
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLET 223 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~Lg-----Y~fvDTDeLIEq 223 (261)
.+|..|+|+|+|||||||+++.||+.|+ +.++|.|.+.+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~ 55 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTT 55 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHH
Confidence 4688999999999999999999999986 357899987543
No 89
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.44 E-value=7.8e-08 Score=76.55 Aligned_cols=49 Identities=16% Similarity=-0.012 Sum_probs=38.2
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCC--ccCcHHHHHHHhCCCHHHHHHhh
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYT--PLSTKELLETFAKQTIDSWMLAE 236 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~--fvDTDeLIEq~agkSI~eIFaee 236 (261)
++|+.|+|.|++||||||+++.||+.||+. ++++++- .|..|.+++.+.
T Consensus 2 m~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~----~~~~i~~~~~~~ 52 (213)
T 2plr_A 2 KKGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWN----SSDWIHDIIKEA 52 (213)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETT----CCCHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCC----cHHHHHHHHhcc
Confidence 578899999999999999999999999985 5554332 455666766654
No 90
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.43 E-value=1.2e-07 Score=75.10 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=27.9
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD 216 (261)
+.|+|+|++||||||+++.||+.||+.+++
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 369999999999999999999999998876
No 91
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.42 E-value=3.3e-08 Score=80.80 Aligned_cols=44 Identities=7% Similarity=0.139 Sum_probs=38.1
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc-----------------------CCCccCcHHHHHHHhC
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL-----------------------GYTPLSTKELLETFAK 226 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L-----------------------gY~fvDTDeLIEq~ag 226 (261)
+-+|..|+|+|+|||||||+++.|++.+ +|.|+|.|++.+...+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~ 75 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKE 75 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHc
Confidence 4578899999999999999999999998 5778999988776554
No 92
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.42 E-value=1.1e-07 Score=92.24 Aligned_cols=41 Identities=24% Similarity=0.197 Sum_probs=36.8
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcC------CCccCcHHHHHH
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGLG------YTPLSTKELLET 223 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg------Y~fvDTDeLIEq 223 (261)
.-+|..|+|+|+|||||||+++.||..|+ +.++|.|.+++.
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~ 412 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRH 412 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHh
Confidence 34899999999999999999999999995 567999999875
No 93
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.40 E-value=1.3e-07 Score=91.43 Aligned_cols=46 Identities=15% Similarity=0.071 Sum_probs=39.0
Q ss_pred hHHHHHHHhhc-----CCceEEEEecCCCchhHHHHHHHHhcCC-------CccCcHH
Q 024881 174 ESLTAGSMQLL-----KGTSIFLVGDSTEVNEKVALELAVGLGY-------TPLSTKE 219 (261)
Q Consensus 174 e~l~~g~~~lL-----kG~sIyLVGmmGsGKSTVGr~LA~~LgY-------~fvDTDe 219 (261)
+.|.+-+.+.. +|.+|+|+|+|||||||||+.||++||+ .|+|.|.
T Consensus 378 peV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 378 PEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred hhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 34455555555 7889999999999999999999999997 6999998
No 94
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.37 E-value=1.9e-07 Score=85.96 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=32.8
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCccCcHHH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL 220 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeL 220 (261)
+.-|+|+|+|||||||+++.||+.+||.++|+|++
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 292 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL 292 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH
Confidence 45599999999999999999999999999999986
No 95
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.35 E-value=1.4e-07 Score=82.47 Aligned_cols=41 Identities=20% Similarity=0.153 Sum_probs=37.4
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a 225 (261)
++..|.|+|++||||||+++.||+.|||.++|+|.+....+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~ 48 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIAT 48 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHH
Confidence 56789999999999999999999999999999999987765
No 96
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.33 E-value=1.8e-07 Score=74.75 Aligned_cols=40 Identities=10% Similarity=0.051 Sum_probs=35.0
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCC-CccCcHHHHHHHh
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGY-TPLSTKELLETFA 225 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY-~fvDTDeLIEq~a 225 (261)
|..+.|+|+|||||||+++.||..++. .++|.|++.+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~~ 42 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVV 42 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhhc
Confidence 567899999999999999999999976 8999999876543
No 97
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.30 E-value=4e-07 Score=88.32 Aligned_cols=62 Identities=16% Similarity=0.131 Sum_probs=46.8
Q ss_pred HHHHHHHhhc-----CCceEEEEecCCCchhHHHHHHHHhcC----CC--ccCcHHHHHHHhCCCHHHHHHhhCchhHHh
Q 024881 175 SLTAGSMQLL-----KGTSIFLVGDSTEVNEKVALELAVGLG----YT--PLSTKELLETFAKQTIDSWMLAEGSDSVVN 243 (261)
Q Consensus 175 ~l~~g~~~lL-----kG~sIyLVGmmGsGKSTVGr~LA~~Lg----Y~--fvDTDeLIEq~agkSI~eIFaeeGE~~FRe 243 (261)
.|.+-..+.+ +|..|+|+|+|||||||+|+.||++|+ +. ++|.|.+-.. -.|+..|++
T Consensus 380 eVsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~-----------l~~~~~f~~ 448 (573)
T 1m8p_A 380 EVVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHE-----------LSSELGFTR 448 (573)
T ss_dssp HHHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHH-----------TCTTCCCSH
T ss_pred cccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHH-----------hccccCCCh
Confidence 3778888777 578899999999999999999999997 44 5666654331 145667777
Q ss_pred hHHH
Q 024881 244 GECD 247 (261)
Q Consensus 244 lEs~ 247 (261)
.|..
T Consensus 449 ~er~ 452 (573)
T 1m8p_A 449 EDRH 452 (573)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 6664
No 98
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.23 E-value=1.1e-07 Score=75.25 Aligned_cols=47 Identities=21% Similarity=0.063 Sum_probs=36.5
Q ss_pred eEEEEecCCCchhHHHHHHHHhc---CCCccCcHHHHHHHhCCCHHHHHH
Q 024881 188 SIFLVGDSTEVNEKVALELAVGL---GYTPLSTKELLETFAKQTIDSWML 234 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~L---gY~fvDTDeLIEq~agkSI~eIFa 234 (261)
-|.|.|.+||||||+++.||+.| |+.++++++-.....|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~g~~~~~~~~ 51 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCCCCCcHHHHHHHHHH
Confidence 48999999999999999999999 999998876433333455666665
No 99
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.13 E-value=1.1e-06 Score=84.80 Aligned_cols=62 Identities=15% Similarity=0.071 Sum_probs=47.7
Q ss_pred HHHHHHHhhc-----CCceEEEEecCCCchhHHHHHHHHhcC-----CCccCcHHHHHHHhCCCHHHHHHhhCchhHHhh
Q 024881 175 SLTAGSMQLL-----KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNG 244 (261)
Q Consensus 175 ~l~~g~~~lL-----kG~sIyLVGmmGsGKSTVGr~LA~~Lg-----Y~fvDTDeLIEq~agkSI~eIFaeeGE~~FRel 244 (261)
.|.+-+.+.. +|..|+|+|++||||||+|+.||+.|+ +.++|.|.+-+.. .|+..|++.
T Consensus 356 eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l-----------~~~~~f~~~ 424 (546)
T 2gks_A 356 EVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHL-----------SRGLGFSKE 424 (546)
T ss_dssp HHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHT-----------CTTCCSSHH
T ss_pred hHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhh-----------cccccccHH
Confidence 4666666666 467899999999999999999999998 4899999865443 255567666
Q ss_pred HHH
Q 024881 245 ECD 247 (261)
Q Consensus 245 Es~ 247 (261)
|..
T Consensus 425 er~ 427 (546)
T 2gks_A 425 DRI 427 (546)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 100
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.11 E-value=4.6e-07 Score=73.50 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=35.8
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc-CCCccCcHHHHH
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELLE 222 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L-gY~fvDTDeLIE 222 (261)
.-+|..|.|+|.+||||||+++.||+.+ |+.++|.|.++.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~ 58 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFK 58 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCcccc
Confidence 3346779999999999999999999999 999999998874
No 101
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.10 E-value=1.8e-06 Score=73.22 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=35.4
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF 224 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~ 224 (261)
|.|+|.|++||||+|.++.||+.+|+..++|.+++.+.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~ 38 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREA 38 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHH
Confidence 57999999999999999999999999999999999653
No 102
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.05 E-value=3.3e-06 Score=72.85 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=37.7
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a 225 (261)
+-+..-|+|+|++||||+|.++.||+.+|+..++|.+++.+..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i 68 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEV 68 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHH
Confidence 3455568999999999999999999999999999999997643
No 103
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.05 E-value=4.9e-07 Score=83.58 Aligned_cols=70 Identities=11% Similarity=0.052 Sum_probs=56.9
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHH--------------HHHHhCCC-----HHHHHHhhCchhHHhhHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQT-----IDSWMLAEGSDSVVNGECD 247 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeL--------------IEq~agkS-----I~eIFaeeGE~~FRelEs~ 247 (261)
..|.|+|++||||||+++.||+.||..+++.|.+ .|+..|.. +.+..+.-+...|++.+.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a~~ 87 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRAEK 87 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHHHH
Confidence 3699999999999999999999999999998887 45555544 5555567788899999999
Q ss_pred HHHHHhccc
Q 024881 248 VLESLIMFE 256 (261)
Q Consensus 248 VLeels~~~ 256 (261)
.++++....
T Consensus 88 ~i~~i~~~g 96 (340)
T 3d3q_A 88 YIKDITRRG 96 (340)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhCC
Confidence 988876433
No 104
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.90 E-value=3.6e-06 Score=80.23 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=44.3
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcH--HHHH-HHhCCCHHHHHHhhCchh----------------HHhh
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK--ELLE-TFAKQTIDSWMLAEGSDS----------------VVNG 244 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTD--eLIE-q~agkSI~eIFaeeGE~~----------------FRel 244 (261)
+.+.+|.|+|++|+|||++++.||+.||++|++.| .+.+ .+.|..+.+++.+.++.+ .+..
T Consensus 48 ~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~ 127 (444)
T 1g41_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVA 127 (444)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC-------
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhH
Confidence 34578999999999999999999999999998766 4666 477877777776655554 4455
Q ss_pred HHHHHHHHh
Q 024881 245 ECDVLESLI 253 (261)
Q Consensus 245 Es~VLeels 253 (261)
|.+|+.+|.
T Consensus 128 e~rvl~~LL 136 (444)
T 1g41_A 128 EERILDALL 136 (444)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 666666665
No 105
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=97.82 E-value=1.4e-05 Score=70.04 Aligned_cols=30 Identities=17% Similarity=0.097 Sum_probs=26.7
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT 217 (261)
-|-|.|++|||||||++.|++.+|++.+.-
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~ 32 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVKYQL 32 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEECCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeEEec
Confidence 478999999999999999999998877763
No 106
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.81 E-value=7.3e-06 Score=66.23 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=37.8
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcC--CCccCcHHHHHHHhCCCHH
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKELLETFAKQTID 230 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~Lg--Y~fvDTDeLIEq~agkSI~ 230 (261)
-+|..|.|+|.+||||||+++.||..++ +.+++.|..+-.....++.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~~~~~~~~~ 52 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLE 52 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBCCCTTSCHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccccCcccccHH
Confidence 4677899999999999999999999999 8899988765433444443
No 107
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.70 E-value=3e-05 Score=63.87 Aligned_cols=41 Identities=20% Similarity=0.115 Sum_probs=34.9
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc-----------------------CCCccCcHHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL-----------------------GYTPLSTKELLETFA 225 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L-----------------------gY~fvDTDeLIEq~a 225 (261)
+|.-|.|+|++|+||||+.+.|+..+ +|.|+|.+++-+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~ 70 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIK 70 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHh
Confidence 58889999999999999999999987 478888887776543
No 108
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.67 E-value=2.1e-05 Score=62.53 Aligned_cols=29 Identities=24% Similarity=0.094 Sum_probs=25.5
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+..+|..|.|+|++||||||+++.|+..+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45679999999999999999999999987
No 109
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.65 E-value=4.5e-05 Score=61.29 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=25.0
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++|.-+.|+|++|+||||+.+.|+..+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 578889999999999999999999865
No 110
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.62 E-value=7.6e-05 Score=64.91 Aligned_cols=51 Identities=12% Similarity=0.094 Sum_probs=41.3
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCcc--CcHHHHHHHhCCC---HHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPL--STKELLETFAKQT---IDSWMLA 235 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv--DTDeLIEq~agkS---I~eIFae 235 (261)
.+..|.|.|++|+|||++++.||..++.+|+ +..+++.+..|.+ +.++|..
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~ 103 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDK 103 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHH
Confidence 4677999999999999999999999998875 6668888777765 4555543
No 111
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.60 E-value=2.2e-05 Score=65.66 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=28.3
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT 217 (261)
..+|.|+|++|+|||++++.||..++.+++..
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 44699999999999999999999999877654
No 112
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.53 E-value=5.7e-05 Score=59.88 Aligned_cols=41 Identities=20% Similarity=0.305 Sum_probs=35.0
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc----CC--CccCcHHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL----GY--TPLSTKELLETFA 225 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L----gY--~fvDTDeLIEq~a 225 (261)
+|..++|+|++|+||||+++.+|..+ |+ .+++.+++++...
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 83 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLK 83 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 58899999999999999999999887 65 4678888887653
No 113
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.52 E-value=3.8e-05 Score=65.08 Aligned_cols=55 Identities=9% Similarity=-0.007 Sum_probs=39.5
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc-CCCccC--cHHHH---------H-----HHhCCCHHHHHHhhCc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL-GYTPLS--TKELL---------E-----TFAKQTIDSWMLAEGS 238 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L-gY~fvD--TDeLI---------E-----q~agkSI~eIFaeeGE 238 (261)
-+|+-|+|.|.+||||||+++.||+.| |+.++. .|..+ + .-.|..+.++|..+++
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ep~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~ 93 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPE 93 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEECCCHHHHTSCCCC------------CCCCHHHHHHHCHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEecchhhhhccccccccccccccccccCCchHHHHHhCch
Confidence 467889999999999999999999999 777663 33221 1 2246668888876543
No 114
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.45 E-value=8.2e-05 Score=65.86 Aligned_cols=34 Identities=21% Similarity=0.140 Sum_probs=31.2
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCcH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTD 218 (261)
.+.+|.|+|++|+|||++++.||+.+|++|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~ 83 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD 83 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence 5678999999999999999999999999998764
No 115
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.38 E-value=3e-05 Score=68.45 Aligned_cols=37 Identities=14% Similarity=0.067 Sum_probs=29.6
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcC-----CCccCcHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELL 221 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg-----Y~fvDTDeLI 221 (261)
++.-|-|.|.+|||||||++.||+.|| +..+|+|++-
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 345699999999999999999999998 7889999864
No 116
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.37 E-value=9.9e-05 Score=62.05 Aligned_cols=39 Identities=21% Similarity=0.178 Sum_probs=31.6
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhcCCC----------ccCcHHH
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYT----------PLSTKEL 220 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~----------fvDTDeL 220 (261)
++-+|.-|-|+|.+||||||+++.||..||+. +++.|.+
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~ 69 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRF 69 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGG
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcC
Confidence 34467779999999999999999999999976 5677753
No 117
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.35 E-value=0.00019 Score=60.85 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=28.3
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD 216 (261)
+.+|+|.|++|+|||++++.+|..++.+|+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~~ 84 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATFLN 84 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 6789999999999999999999999987753
No 118
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.32 E-value=0.00015 Score=64.37 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=30.3
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCcH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTD 218 (261)
.+.+|+|+|++|+|||++++.||+.+|++|+..+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~ 104 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISD 104 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 3568999999999999999999999999887654
No 119
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.29 E-value=3.2e-05 Score=65.72 Aligned_cols=36 Identities=19% Similarity=0.098 Sum_probs=30.7
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcC--CCccCcH
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTK 218 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg--Y~fvDTD 218 (261)
.-+|.-|.|.|.+||||||+++.||+.|+ +..+.+.
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~ 60 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR 60 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEC
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeec
Confidence 34788999999999999999999999996 6666553
No 120
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.29 E-value=0.00014 Score=60.64 Aligned_cols=29 Identities=7% Similarity=0.019 Sum_probs=26.3
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc-CCC
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL-GYT 213 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L-gY~ 213 (261)
+|+.|.+.|.+||||||+++.||+.| |+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~~ 30 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWH 30 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTTSE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCCCe
Confidence 57789999999999999999999999 654
No 121
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.28 E-value=0.00012 Score=61.22 Aligned_cols=32 Identities=19% Similarity=0.108 Sum_probs=28.3
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT 217 (261)
+.+|+|.|++|+|||++++.||+.++.+|+..
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 44699999999999999999999999887654
No 122
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.26 E-value=0.00017 Score=59.57 Aligned_cols=29 Identities=21% Similarity=0.008 Sum_probs=19.3
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHH-Hhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELA-VGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA-~~L 210 (261)
..-+|.-|.|+|.+||||||+.+.|+ ..+
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34568889999999999999999999 554
No 123
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.25 E-value=0.00027 Score=60.32 Aligned_cols=72 Identities=15% Similarity=0.193 Sum_probs=50.2
Q ss_pred HhhcCCceEEEEecCCCchhHHHHHHHHhc-----------------------CCCccCcHHHHHHHhC-----------
Q 024881 181 MQLLKGTSIFLVGDSTEVNEKVALELAVGL-----------------------GYTPLSTKELLETFAK----------- 226 (261)
Q Consensus 181 ~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L-----------------------gY~fvDTDeLIEq~ag----------- 226 (261)
+..++|.-|.|+|++|+||||+.+.|++.+ .|.|+|.+++-+....
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~~~~ 93 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQG 93 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhhhhhhc
Confidence 456789999999999999999999999775 3678888887666542
Q ss_pred -------CCHHHHHHhhCchhHHhhHHHHHHHHh
Q 024881 227 -------QTIDSWMLAEGSDSVVNGECDVLESLI 253 (261)
Q Consensus 227 -------kSI~eIFaeeGE~~FRelEs~VLeels 253 (261)
.+|.++ .+.|...+-+++-+.+.++-
T Consensus 94 n~YGt~~~~v~~~-l~~G~~vildid~qg~~~~~ 126 (197)
T 3ney_A 94 NMFGTKFETVHQI-HKQNKIAILDIEPQTLKIVR 126 (197)
T ss_dssp EEEEEEHHHHHHH-HHTTCEEEEECCGGGHHHHC
T ss_pred eecccchhhHHHH-HhcCCeEEEEECHHHHHHHH
Confidence 124444 33566666666666555553
No 124
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.25 E-value=0.00027 Score=55.05 Aligned_cols=45 Identities=16% Similarity=-0.076 Sum_probs=35.2
Q ss_pred cchhHHHHHHHhhc-CCceEEEEecCCCchhHHHHHHHHhc---CCCcc
Q 024881 171 ESWESLTAGSMQLL-KGTSIFLVGDSTEVNEKVALELAVGL---GYTPL 215 (261)
Q Consensus 171 e~We~l~~g~~~lL-kG~sIyLVGmmGsGKSTVGr~LA~~L---gY~fv 215 (261)
++|..+.+.+.... .+.+|+|.|.+|+|||++++.++... +++|+
T Consensus 8 ~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v 56 (145)
T 3n70_A 8 EWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV 56 (145)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE
Confidence 34666666665544 55689999999999999999999987 66664
No 125
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.23 E-value=0.00028 Score=59.30 Aligned_cols=32 Identities=19% Similarity=0.120 Sum_probs=29.3
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD 216 (261)
.+.+|+|.|++|+|||++++.+|..+|.+++.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~ 81 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNATFIR 81 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 56789999999999999999999999998865
No 126
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.23 E-value=0.00042 Score=60.59 Aligned_cols=61 Identities=20% Similarity=0.309 Sum_probs=42.3
Q ss_pred CCCCcccccchhHHHHHHHhhc---------------CCceEEEEecCCCchhHHHHHHHHhcCCCccC--cHHHHHHH
Q 024881 163 ELKWPDIVESWESLTAGSMQLL---------------KGTSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLETF 224 (261)
Q Consensus 163 ~m~Wp~~~e~We~l~~g~~~lL---------------kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD--TDeLIEq~ 224 (261)
.+.|.||.-. +.+.+.+.+.+ .+.+|+|.|++|+|||++++.+|+.+|.+|+. ..+++.+.
T Consensus 14 ~~~~~di~G~-~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~ 91 (322)
T 3eie_A 14 NVKWEDVAGL-EGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 91 (322)
T ss_dssp CCCGGGSCSC-HHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTT
T ss_pred CCCHHHhcCh-HHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcc
Confidence 3788877542 22333344333 23579999999999999999999999988864 44454433
No 127
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.22 E-value=0.0002 Score=57.01 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=24.4
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
-+|.-|.|+|++||||||+.+.|+..+
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 378889999999999999999999864
No 128
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.20 E-value=0.00028 Score=53.49 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=23.4
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+.+++|+|++|+|||++++.+|+.+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999997
No 129
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.19 E-value=0.00025 Score=59.36 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=28.8
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPL 215 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv 215 (261)
-.+.+++|+|++|+|||++++.+|+.++.+++
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~ 79 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFI 79 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 34678999999999999999999999998775
No 130
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.16 E-value=0.00022 Score=58.67 Aligned_cols=31 Identities=16% Similarity=0.078 Sum_probs=27.9
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD 216 (261)
+.+|+|+|++|+|||++++.+|+.+|.+++.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 69 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLA 69 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4569999999999999999999999988763
No 131
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.14 E-value=0.00032 Score=62.93 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=40.2
Q ss_pred CCCcccccchhHHHHHHHhhc---------------CCceEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881 164 LKWPDIVESWESLTAGSMQLL---------------KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (261)
Q Consensus 164 m~Wp~~~e~We~l~~g~~~lL---------------kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT 217 (261)
+.|.||+-. +.+.+-+.+.+ .+.+|+|.|.+|+|||++++.+|.++|++|+..
T Consensus 112 ~~~~~iiG~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 112 VKFDDIAGQ-DLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp CCGGGSCSC-HHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CChHHhCCH-HHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 677776542 33444444444 357899999999999999999999999998743
No 132
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.14 E-value=0.0003 Score=57.72 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=22.0
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+|..+.|||++|+||||+.+.|+..+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 57889999999999999999999743
No 133
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.12 E-value=0.00064 Score=54.43 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=33.0
Q ss_pred ceEEEEecCCCchhHHHHHHHHhc---CCCc--cCcHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGL---GYTP--LSTKELLETFA 225 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~L---gY~f--vDTDeLIEq~a 225 (261)
.+|+|.|++|+|||++++.+|..+ |+++ ++..+++++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELK 98 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHH
Confidence 789999999999999999999988 6655 68887776653
No 134
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.11 E-value=0.00029 Score=53.85 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=23.5
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+.+|+|+|++|+|||++++.+|+.+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999998
No 135
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=97.10 E-value=0.0059 Score=45.66 Aligned_cols=77 Identities=19% Similarity=0.177 Sum_probs=63.0
Q ss_pred CceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCC-----------------cceeeeecccccCCCCC
Q 024881 79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSG-----------------SFITLIETNQLFDKIKP 141 (261)
Q Consensus 79 ~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~-----------------~~~tlId~g~L~~kIk~ 141 (261)
+.+.+.++...+.|++.||+ .+..||.|.++++.|.|.-+... .+..-| .|.+.|.+
T Consensus 5 P~~di~e~~~~~~v~~~lPG---~~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~---~LP~~vd~ 78 (100)
T 3gla_A 5 PRVDIKEEVNHFVLYADLPG---IDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRF---ALPDSADA 78 (100)
T ss_dssp CCEEEEECSSEEEEEEECTT---SCGGGCEEEEETTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEE---ECCTTBCT
T ss_pred CcEEEEECCCEEEEEEECCC---CCHHHEEEEEECCEEEEEEEEcCcCccCCccEEEEeecceEEEEEE---ECCCCcCh
Confidence 46788899999999999998 56789999999999999875432 232223 38888999
Q ss_pred CceeeEEecCeEEEEEEecC
Q 024881 142 TETIWYIDEDQLVINLKKQD 161 (261)
Q Consensus 142 ~Et~W~IdD~~lvv~L~K~d 161 (261)
+.-...++|..|.|.|.|..
T Consensus 79 ~~i~A~~~~GvL~I~~pK~~ 98 (100)
T 3gla_A 79 DGITAAGRNGVLEIRIPKRP 98 (100)
T ss_dssp TSCEEEEETTEEEEEEEBC-
T ss_pred HHeEEEEeCCEEEEEEecCC
Confidence 99889999999999999975
No 136
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=97.09 E-value=0.0049 Score=46.79 Aligned_cols=79 Identities=20% Similarity=0.398 Sum_probs=65.1
Q ss_pred CCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccC------------CcceeeeecccccCCCCCCcee
Q 024881 78 TSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRS------------GSFITLIETNQLFDKIKPTETI 145 (261)
Q Consensus 78 t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~------------~~~~tlId~g~L~~kIk~~Et~ 145 (261)
.+.+.+.++..++.|++.||+ .+-.||.|.++++.|.|.-+.. +.+..-| .|.+.|.++.-.
T Consensus 6 ~P~~di~e~~~~~~v~~~lPG---~~~edi~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~---~LP~~vd~~~i~ 79 (102)
T 4fei_A 6 TPAADWRDAGTHLDLLLDVPG---VDAGTLALAEDGGQLTVSGERPGTEHLLRSERPSGRFVREL---AFPEPVRPASGV 79 (102)
T ss_dssp CCCEEEEEETTEEEEEEECTT---CCGGGCEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEE---ECSSCBCTTCCE
T ss_pred cCcEEEEEcCCEEEEEEECCC---CchHhEEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEE---ECCCCcchhHcE
Confidence 346788889999999999998 6778999999999999976542 2343333 388899999888
Q ss_pred eEEecCeEEEEEEecCC
Q 024881 146 WYIDEDQLVINLKKQDP 162 (261)
Q Consensus 146 W~IdD~~lvv~L~K~d~ 162 (261)
..++|..|.|.|.|..+
T Consensus 80 A~~~~GvL~I~lpK~~~ 96 (102)
T 4fei_A 80 ASLAGGVLTVRFEKLRP 96 (102)
T ss_dssp EEEETTEEEEEEEBSSC
T ss_pred EEEECCEEEEEEEccCc
Confidence 99999999999999876
No 137
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.08 E-value=0.00034 Score=60.99 Aligned_cols=31 Identities=10% Similarity=0.044 Sum_probs=27.7
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT 217 (261)
..|+|.|++|+|||++++.+|+.+|++|+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~~~~i~v 67 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMGINPIMM 67 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHTCCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 3588889999999999999999999998754
No 138
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.07 E-value=0.0003 Score=56.17 Aligned_cols=44 Identities=11% Similarity=0.139 Sum_probs=33.3
Q ss_pred HHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhc---CC--CccCcHHH
Q 024881 176 LTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL---GY--TPLSTKEL 220 (261)
Q Consensus 176 l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L---gY--~fvDTDeL 220 (261)
+...+.+. +|..++|+|.+|+||||+++.+|..+ |+ .+++..++
T Consensus 27 ~~~~l~~~-~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 27 LVYVLRHK-HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASM 75 (149)
T ss_dssp HHHHCCCC-CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTS
T ss_pred HHHHHHhc-CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHh
Confidence 44444444 89999999999999999999999988 73 34454433
No 139
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.06 E-value=0.00028 Score=59.50 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=28.7
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT 217 (261)
..+++|+|++|+|||++++.+|+.+|++|+..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 45799999999999999999999999997643
No 140
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.04 E-value=0.0007 Score=53.95 Aligned_cols=46 Identities=9% Similarity=-0.047 Sum_probs=33.7
Q ss_pred HHHHHHhhc---CCceEEEEecCCCchhHHHHHHHHhcC---C--CccCcHHHH
Q 024881 176 LTAGSMQLL---KGTSIFLVGDSTEVNEKVALELAVGLG---Y--TPLSTKELL 221 (261)
Q Consensus 176 l~~g~~~lL---kG~sIyLVGmmGsGKSTVGr~LA~~Lg---Y--~fvDTDeLI 221 (261)
+.+.+.+.+ .+.+++|+|++|+|||++++.+|+.++ + .+++.+++.
T Consensus 39 ~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 92 (242)
T 3bos_A 39 LIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA 92 (242)
T ss_dssp HHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 444444443 578999999999999999999999876 3 355555543
No 141
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.03 E-value=0.00059 Score=57.99 Aligned_cols=30 Identities=20% Similarity=0.140 Sum_probs=27.6
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPL 215 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fv 215 (261)
+.+|+|.|+.|+|||++++.+|+.+|++|+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 367999999999999999999999998875
No 142
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.01 E-value=9.4e-05 Score=62.70 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=30.3
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcC---------CCccCcHHHHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLG---------YTPLSTKELLETF 224 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg---------Y~fvDTDeLIEq~ 224 (261)
.+.+|+|+|++|+|||++++.+|+.++ +..++..+++.+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~ 114 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQY 114 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhc
Confidence 345799999999999999999999983 3445655554433
No 143
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.00 E-value=0.00055 Score=61.15 Aligned_cols=31 Identities=23% Similarity=0.177 Sum_probs=28.4
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD 216 (261)
+.+|+|+|++|+|||++++.+|+.+|+.|+.
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 147 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGATFFS 147 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 5689999999999999999999999998863
No 144
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.97 E-value=0.00049 Score=59.47 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=29.8
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPL 215 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv 215 (261)
.+..|.+++|+|++|+|||++++.||+.+|..++
T Consensus 42 ~l~~~~~vll~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred HHHcCCeEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 3445789999999999999999999999997764
No 145
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.96 E-value=0.00067 Score=54.31 Aligned_cols=36 Identities=14% Similarity=-0.000 Sum_probs=28.8
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHH
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL 221 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLI 221 (261)
=+|.-+.|+|.+||||||+.+.+. .|+..++.|.+.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d~~~ 42 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSDFCR 42 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHc--cCCeEEccHHHH
Confidence 367789999999999999999865 466667776654
No 146
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.95 E-value=0.00061 Score=54.78 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=21.9
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
|.-+.|+|++|+||||+.+.|+..+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4458899999999999999999754
No 147
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.92 E-value=0.00055 Score=60.24 Aligned_cols=35 Identities=17% Similarity=0.045 Sum_probs=29.3
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcC-------CCccCcHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKE 219 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg-------Y~fvDTDe 219 (261)
+|.-|.|+|.+||||||+++.|+..++ ..++|.|.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~ 120 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG 120 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCC
Confidence 567799999999999999999999887 44555554
No 148
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.89 E-value=0.00054 Score=56.04 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=24.7
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
+|..|.|+|.+||||||+++.|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 577899999999999999999999874
No 149
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.88 E-value=0.00057 Score=58.95 Aligned_cols=59 Identities=10% Similarity=0.019 Sum_probs=39.3
Q ss_pred EecCCCCCCcccccc---hhHHHHHHHhhc----CCceEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881 158 KKQDPELKWPDIVES---WESLTAGSMQLL----KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (261)
Q Consensus 158 ~K~d~~m~Wp~~~e~---We~l~~g~~~lL----kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT 217 (261)
+|..+ ..|.||+-. .+.+...+.... ...+|+|.|++|+|||++++.+|+.+|.+|+..
T Consensus 21 ~~~~p-~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 21 TSLRP-SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp --CCC-CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred hccCC-CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 45666 567766532 222333333221 124799999999999999999999999987654
No 150
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.85 E-value=0.00058 Score=55.74 Aligned_cols=36 Identities=17% Similarity=0.089 Sum_probs=28.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc---CCCcc--CcHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPL--STKEL 220 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L---gY~fv--DTDeL 220 (261)
+|.-|.|+|.+||||||+++.|+..| |+..+ +.|..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 46779999999999999999999986 65543 44643
No 151
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.79 E-value=0.00032 Score=56.18 Aligned_cols=24 Identities=13% Similarity=0.075 Sum_probs=22.3
Q ss_pred eEEEEecCCCchhHHHHHHHHhcC
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
-|.|+|.+||||||+++.|++.|+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999984
No 152
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.77 E-value=0.00046 Score=63.93 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=31.5
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL 220 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeL 220 (261)
++.-|+++|++|+||||++..||+++|..+++.|.+
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 455689999999999999999999999877777765
No 153
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.75 E-value=0.0011 Score=56.51 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=27.6
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc------CCCccCc
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL------GYTPLST 217 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L------gY~fvDT 217 (261)
|.+++|+|++|+||||+++.+|+.+ ++.++-.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i 82 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI 82 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 6689999999999999999999988 7665543
No 154
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.73 E-value=0.00098 Score=62.63 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=28.5
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT 217 (261)
..++|.|++|+|||++++.+|+.+|+.++..
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 5799999999999999999999999988743
No 155
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.72 E-value=0.00066 Score=59.03 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=25.7
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881 189 IFLVGDSTEVNEKVALELAVGLGYTPLS 216 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~LgY~fvD 216 (261)
+.|+|++|+||||+++.||..++..++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~ 74 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFIS 74 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999999999876653
No 156
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.70 E-value=0.00058 Score=53.17 Aligned_cols=52 Identities=15% Similarity=0.173 Sum_probs=38.4
Q ss_pred ccchhHHHHHHHhhc-CCceEEEEecCCCchhHHHHHHHHhcC-CCccCcHHHH
Q 024881 170 VESWESLTAGSMQLL-KGTSIFLVGDSTEVNEKVALELAVGLG-YTPLSTKELL 221 (261)
Q Consensus 170 ~e~We~l~~g~~~lL-kG~sIyLVGmmGsGKSTVGr~LA~~Lg-Y~fvDTDeLI 221 (261)
-+.|..+.+-+.... .+.+|+|.|.+|+|||++++.++...+ +.++|..++.
T Consensus 10 s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~~~~~~ 63 (143)
T 3co5_A 10 SAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGTPWVSPARVEYL 63 (143)
T ss_dssp CHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTSCEECCSSTTHH
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCCeEEechhhCC
Confidence 345666766666544 456899999999999999999999887 4445654443
No 157
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.69 E-value=0.00085 Score=55.86 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=25.8
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvD 216 (261)
.++|+|.+|+||||+++.||..++.+++.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~~~i~ 79 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARVPFIT 79 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48999999999999999999998766654
No 158
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.67 E-value=0.0014 Score=51.10 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=23.4
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCC
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGY 212 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY 212 (261)
.++|+|+.|+|||++++.+|+.++.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 6999999999999999999999865
No 159
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.65 E-value=0.001 Score=56.19 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=30.9
Q ss_pred cchhHHHHHHHhhcCC--------ceEEEEecCCCchhHHHHHHHHhc
Q 024881 171 ESWESLTAGSMQLLKG--------TSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 171 e~We~l~~g~~~lLkG--------~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+.++.+...+.....| .++.|+|.+|+|||++++.||+.+
T Consensus 24 ~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 24 EAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp HHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3455555555554433 479999999999999999999998
No 160
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.63 E-value=0.0012 Score=53.91 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=24.1
Q ss_pred HhhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 181 MQLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 181 ~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
...-+|.-+.|+|.+||||||+.+.|+..+
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 466778889999999999999999999765
No 161
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.62 E-value=0.001 Score=57.46 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=30.3
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc---CCCc--cCcHHHHH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL---GYTP--LSTKELLE 222 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L---gY~f--vDTDeLIE 222 (261)
+.+++|.|++|+|||++++.+|..+ |+.+ ++.+++.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~ 78 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ 78 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
Confidence 4689999999999999999999988 7665 55555543
No 162
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.58 E-value=0.0013 Score=58.15 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=25.4
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCc
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTP 214 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~f 214 (261)
.+++|+|++|+||||+++.+|..+|..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 5799999999999999999999997654
No 163
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.57 E-value=0.00059 Score=59.00 Aligned_cols=30 Identities=13% Similarity=0.003 Sum_probs=23.1
Q ss_pred HhhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 181 MQLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 181 ~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
..+.+|.-|.+.|..|+||||+++.|++.|
T Consensus 20 ~~m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 20 GSMARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp ---CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344689999999999999999999999999
No 164
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.54 E-value=0.0017 Score=60.22 Aligned_cols=49 Identities=16% Similarity=0.202 Sum_probs=32.2
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc-CCCc--cCcHHHHHHHhCC---CHHHHHH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL-GYTP--LSTKELLETFAKQ---TIDSWML 234 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L-gY~f--vDTDeLIEq~agk---SI~eIFa 234 (261)
+.+|.|.|++|+|||++++.+|..+ |.+| ++..+++....|. .+.++|.
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~ 221 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQ 221 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHH
Confidence 3679999999999999999999999 7776 4666776665443 3455553
No 165
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.54 E-value=0.0014 Score=56.14 Aligned_cols=26 Identities=23% Similarity=0.135 Sum_probs=24.0
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.+.+++|.|++|+|||++++.+|+.+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999998
No 166
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.53 E-value=0.0014 Score=55.95 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=33.7
Q ss_pred ecCCCCCCcccccchhHHHHHHHhhc-CC--ceEEEEecCCCchhHHHHHHHHhcC
Q 024881 159 KQDPELKWPDIVESWESLTAGSMQLL-KG--TSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 159 K~d~~m~Wp~~~e~We~l~~g~~~lL-kG--~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
|..+ ..|.+|+-. +.+...+.+.+ .| .+++|.|++|+|||++++.+|+.++
T Consensus 30 k~~p-~~~~~i~g~-~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 30 KYRP-KNLDEVTAQ-DHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HTCC-SSTTTCCSC-CTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hcCC-CCHHHhhCC-HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4445 455555432 12233344333 33 4699999999999999999999975
No 167
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.52 E-value=0.0016 Score=53.01 Aligned_cols=27 Identities=19% Similarity=0.291 Sum_probs=25.3
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
-+|.-+.|+|++|+||||+.|.||..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 578889999999999999999999988
No 168
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.51 E-value=0.00094 Score=55.72 Aligned_cols=30 Identities=3% Similarity=-0.066 Sum_probs=25.8
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTP 214 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~f 214 (261)
-+|.-|.|+|.+||||||+.+.|+.. |...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v 47 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY-KNDI 47 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG-TTTE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc-cCCe
Confidence 46888999999999999999999988 5433
No 169
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.50 E-value=0.0012 Score=59.25 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=31.3
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCcc--CcHHHHHH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPL--STKELLET 223 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fv--DTDeLIEq 223 (261)
+.+|+|.|++|+|||++++.+|..+|.+|+ +..+++.+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 346999999999999999999999998886 44455443
No 170
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.50 E-value=0.0013 Score=55.83 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=26.2
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT 217 (261)
.|+|+|.+|+||||+++.||..++..++..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~ 104 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARVPFITA 104 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEECCCcChHHHHHHHHHHHcCCCEEEe
Confidence 499999999999999999999987666543
No 171
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.47 E-value=0.0014 Score=53.80 Aligned_cols=27 Identities=15% Similarity=0.259 Sum_probs=24.1
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCC
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYT 213 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~ 213 (261)
+++.|+|.+|+||||+.+.||..++..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 368999999999999999999998743
No 172
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.46 E-value=0.0017 Score=56.28 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=25.3
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCC
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGY 212 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY 212 (261)
|.+++|.|++|+|||++++.+|+.++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 568999999999999999999999985
No 173
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.45 E-value=0.0023 Score=49.53 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=22.3
Q ss_pred ceEEEEecCCCchhHHHHHHHHhc
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.+++|+|+.|+|||++++.+|+.+
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 369999999999999999999986
No 174
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.45 E-value=0.0041 Score=58.00 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=33.5
Q ss_pred HHHHHHhhc---CCceEEEEecCCCchhHHHHHHHHhc----------CCCccCcHH
Q 024881 176 LTAGSMQLL---KGTSIFLVGDSTEVNEKVALELAVGL----------GYTPLSTKE 219 (261)
Q Consensus 176 l~~g~~~lL---kG~sIyLVGmmGsGKSTVGr~LA~~L----------gY~fvDTDe 219 (261)
.+.-+.+.| ...|+.|+|.+|+|||++++.||+.+ |.+++..|-
T Consensus 188 ~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 244 (468)
T 3pxg_A 188 EIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (468)
T ss_dssp HHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred HHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence 344455554 45589999999999999999999998 777776654
No 175
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.44 E-value=0.0023 Score=55.28 Aligned_cols=32 Identities=9% Similarity=-0.053 Sum_probs=27.9
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc-----------CCCccCc
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL-----------GYTPLST 217 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L-----------gY~fvDT 217 (261)
+.+++|.|++|+|||++++.+|+.+ ++.++-.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i 87 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYV 87 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEE
Confidence 4579999999999999999999988 7777643
No 176
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.42 E-value=0.0017 Score=54.06 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=24.0
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.+-+|.-+.|+|++|+||||+.+.|+..+
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44578889999999999999999999765
No 177
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Probab=96.42 E-value=0.025 Score=44.05 Aligned_cols=78 Identities=12% Similarity=0.113 Sum_probs=64.1
Q ss_pred CceEEcccCceEEEEEecCCcccccccceEEEeeC-CEEEEEEccCC-------------cceeeeecccccCCCCCCce
Q 024881 79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADG-TCLTVRVNRSG-------------SFITLIETNQLFDKIKPTET 144 (261)
Q Consensus 79 ~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~-~sL~V~vk~~~-------------~~~tlId~g~L~~kIk~~Et 144 (261)
+.|.+.++..++.|++.||+ .+..||.|.+++ +.|.|..+... .+..-+ .|++.|.++.-
T Consensus 25 P~~di~e~~~~~~v~~~lPG---~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~Er~~~f~R~~---~LP~~vd~~~i 98 (123)
T 3aab_A 25 PPVDMYEEGGYLVVVADLAG---FNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVI---RLPYNVAKDAE 98 (123)
T ss_dssp SCEEEEEETTEEEEEEECCS---CCGGGCEEEEETTTEEEEEEECCCCCCSCEEEECSCSEEEEEE---ECSSEECTTCC
T ss_pred CcEEEEEcCCEEEEEEECCC---CCHHHEEEEEeCCCEEEEEEEEeccCCCeEEEEEEeEEEEEEE---ECCCCcCcchh
Confidence 56888899999999999998 567899999999 99999988653 232222 47788888887
Q ss_pred -eeEEecCeEEEEEEecCC
Q 024881 145 -IWYIDEDQLVINLKKQDP 162 (261)
Q Consensus 145 -~W~IdD~~lvv~L~K~d~ 162 (261)
.-..+|..|.|.+.|...
T Consensus 99 ~~A~~~~GvL~I~lPK~~~ 117 (123)
T 3aab_A 99 ISGKYENGVLTIRIPIAGT 117 (123)
T ss_dssp CEEEEETTEEEEEEEGGGE
T ss_pred CeeEEcCCEEEEEEEcCCC
Confidence 777899999999999764
No 178
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.41 E-value=0.0016 Score=57.56 Aligned_cols=29 Identities=21% Similarity=0.169 Sum_probs=26.5
Q ss_pred ceEEEEecCCCchhHHHHHHHHhc-CCCcc
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGL-GYTPL 215 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~L-gY~fv 215 (261)
..|+|.|++|+|||++++.+|..+ +.+|+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~~~~~~~ 75 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEANNSTFF 75 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred ceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence 679999999999999999999999 77664
No 179
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.38 E-value=0.0019 Score=54.81 Aligned_cols=35 Identities=23% Similarity=0.105 Sum_probs=28.7
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc---CCCccCc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL---GYTPLST 217 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L---gY~fvDT 217 (261)
.++|+-|.|.|..|+||||+++.|++.| ||..+-+
T Consensus 3 ~m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 3 AMTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 4789999999999999999999999998 4555444
No 180
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=96.37 E-value=0.032 Score=45.49 Aligned_cols=76 Identities=22% Similarity=0.310 Sum_probs=63.2
Q ss_pred eEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCC------------------cceeeeecccccCCCCCC
Q 024881 81 YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSG------------------SFITLIETNQLFDKIKPT 142 (261)
Q Consensus 81 Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~------------------~~~tlId~g~L~~kIk~~ 142 (261)
+.+.++..++.|++.||+ .+-.||.|+++++.|.|.-++.. .+..-| .|.+.|.++
T Consensus 59 vdi~e~~~~~~v~~dlPG---~~~edi~V~~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~---~LP~~vd~~ 132 (161)
T 4eld_A 59 ISIIEGDQHIKVIAWLPG---VNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTI---KLPATVKEE 132 (161)
T ss_dssp EEEEECSSEEEEEEECTT---CCGGGEEEEEETTEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEE---ECSSCBCGG
T ss_pred eeEEEeCCEEEEEEECCC---CChHhEEEEEECCEEEEEEEEcccccCCCceEEEEEeeccccEEEEE---ECCCCcccc
Confidence 788889999999999998 57799999999999999876543 222222 488899999
Q ss_pred ceeeEEecCeEEEEEEecCC
Q 024881 143 ETIWYIDEDQLVINLKKQDP 162 (261)
Q Consensus 143 Et~W~IdD~~lvv~L~K~d~ 162 (261)
.-.-.++|..|.|.|.|...
T Consensus 133 ~i~A~~~nGvL~I~lpK~~~ 152 (161)
T 4eld_A 133 NASAKFENGVLSVILPKAES 152 (161)
T ss_dssp GCEEEEETTEEEEEEEBCGG
T ss_pred cEEEEEECCEEEEEEEcCCC
Confidence 88888999999999999765
No 181
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.35 E-value=0.0024 Score=56.46 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=34.4
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcC----CCc--cCcHHHHHHHhC
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLG----YTP--LSTKELLETFAK 226 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~Lg----Y~f--vDTDeLIEq~ag 226 (261)
+.+|||.|.+|+|||++++.+|..+. +++ +..++++++..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~ 198 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKN 198 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHH
Confidence 68999999999999999999998654 654 688888887654
No 182
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.34 E-value=0.0027 Score=54.62 Aligned_cols=28 Identities=11% Similarity=-0.114 Sum_probs=25.1
Q ss_pred eEEEEecCCCchhHHHHHHHHhc----CCCcc
Q 024881 188 SIFLVGDSTEVNEKVALELAVGL----GYTPL 215 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~L----gY~fv 215 (261)
+++|+|++|+||||+++.++..+ ++.++
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~ 77 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFV 77 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEE
Confidence 89999999999999999999998 55554
No 183
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.33 E-value=0.0034 Score=52.57 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=31.1
Q ss_pred chhHHHHHHHhhc-CCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 172 SWESLTAGSMQLL-KGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 172 ~We~l~~g~~~lL-kG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
++..+.+-+.... .+.+|+|.|.+|+|||++++.+|+.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 14 SFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp HHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 3555555554433 467899999999999999999999986
No 184
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.002 Score=58.71 Aligned_cols=38 Identities=5% Similarity=0.115 Sum_probs=30.8
Q ss_pred hhHHHHHHHhhc---CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 173 WESLTAGSMQLL---KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 173 We~l~~g~~~lL---kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++.+..-+...+ +|.+|||.|++|+|||++++.+++.|
T Consensus 29 ~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 29 FTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 445555555544 66789999999999999999999999
No 185
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.32 E-value=0.0016 Score=60.07 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=28.8
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcC--CCccC
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLG--YTPLS 216 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~Lg--Y~fvD 216 (261)
..+.++.|.|++|+|||++++.||+.+| ++|+.
T Consensus 61 ~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~ 95 (456)
T 2c9o_A 61 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCP 95 (456)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEE
T ss_pred CCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEE
Confidence 3457899999999999999999999999 66654
No 186
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.30 E-value=0.0018 Score=56.08 Aligned_cols=30 Identities=17% Similarity=-0.129 Sum_probs=26.0
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCC
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGY 212 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY 212 (261)
.-+|.-|.+.|.+|+||||+++.|++.|+.
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 346888999999999999999999998654
No 187
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.27 E-value=0.0011 Score=63.21 Aligned_cols=31 Identities=19% Similarity=0.131 Sum_probs=28.2
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT 217 (261)
..|.|+|++|+|||++++.+|..+|.+|+..
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 4699999999999999999999999988754
No 188
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.27 E-value=0.0023 Score=61.11 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=30.0
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPL 215 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv 215 (261)
..++|.++.|+|++|+||||+++.||..++.+++
T Consensus 104 ~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~ 137 (543)
T 3m6a_A 104 KSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFV 137 (543)
T ss_dssp SSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 3447889999999999999999999999987764
No 189
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.27 E-value=0.0026 Score=54.02 Aligned_cols=29 Identities=14% Similarity=0.072 Sum_probs=24.8
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
+-+|.-++|+|++|+||||+.+.|+..+-
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45788899999999999999999998763
No 190
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.26 E-value=0.0027 Score=53.30 Aligned_cols=51 Identities=25% Similarity=0.266 Sum_probs=33.6
Q ss_pred ecCCCCCCcccccchhHHHHHHHhhcC---CceEEEEecCCCchhHHHHHHHHhcC
Q 024881 159 KQDPELKWPDIVESWESLTAGSMQLLK---GTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 159 K~d~~m~Wp~~~e~We~l~~g~~~lLk---G~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
|..+ ..|.+++-. +.+..-+.+.++ ..++.|.|+.|+|||++++.+|+.++
T Consensus 18 k~~p-~~~~~~~g~-~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 18 KYRP-QRLDDIVGQ-EHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp HTCC-CSTTTCCSC-HHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred ccCC-CCHHHhhCC-HHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 4455 556555522 223333333332 23799999999999999999999973
No 191
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Probab=96.26 E-value=0.049 Score=44.30 Aligned_cols=79 Identities=16% Similarity=0.323 Sum_probs=64.1
Q ss_pred CCceEEcccCceEEEEEecCCcccccccceEEEe-eCCEEEEEEccCC-----------------cceeeeecccccCCC
Q 024881 78 TSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDA-DGTCLTVRVNRSG-----------------SFITLIETNQLFDKI 139 (261)
Q Consensus 78 t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~-~~~sL~V~vk~~~-----------------~~~tlId~g~L~~kI 139 (261)
.+.+.+.++..++.|++.||+ .+-.||.|++ +++.|.|.-+... .+..-| .|.+.|
T Consensus 43 ~p~~di~e~~d~~~v~~dlPG---v~kedI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~---~LP~~v 116 (151)
T 1gme_A 43 NARMDWKETPEAHVFKADLPG---VKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRF---RLLEDA 116 (151)
T ss_dssp GGCEEEEECSSEEEEEEECTT---CCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEE---ECSSCC
T ss_pred CCceEEEEcCCEEEEEEECCC---CChHHEEEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEE---ECCCCc
Confidence 457899999999999999998 5678999999 5789999876542 333223 378889
Q ss_pred CCCceeeEEecCeEEEEEEecCC
Q 024881 140 KPTETIWYIDEDQLVINLKKQDP 162 (261)
Q Consensus 140 k~~Et~W~IdD~~lvv~L~K~d~ 162 (261)
.++.-.=.++|..|.|.|.|...
T Consensus 117 d~~~i~A~~~nGvL~I~lPK~~~ 139 (151)
T 1gme_A 117 KVEEVKAGLENGVLTVTVPKAEV 139 (151)
T ss_dssp CGGGCEEEEETTEEEEEEECCCC
T ss_pred cccceEEEEECCEEEEEEEccCc
Confidence 88887778899999999999876
No 192
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.25 E-value=0.0016 Score=60.21 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=29.4
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCccCcHH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDe 219 (261)
+.-|+|+|++|+||||++..||+++|..+++.|.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 3458999999999999999999999977777665
No 193
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.24 E-value=0.0031 Score=53.20 Aligned_cols=34 Identities=9% Similarity=-0.055 Sum_probs=30.5
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCccCcHH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDe 219 (261)
|..+.|.|+.|.|||++.+.+++.+|+.++|.+.
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~ 64 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE 64 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence 6789999999999999999999999988887654
No 194
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.20 E-value=0.0039 Score=60.98 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=35.6
Q ss_pred hHHHHHHHhhc---CCceEEEEecCCCchhHHHHHHHHhc----------CCCccCcHH
Q 024881 174 ESLTAGSMQLL---KGTSIFLVGDSTEVNEKVALELAVGL----------GYTPLSTKE 219 (261)
Q Consensus 174 e~l~~g~~~lL---kG~sIyLVGmmGsGKSTVGr~LA~~L----------gY~fvDTDe 219 (261)
+..+.-+.+.| .+.|+.|+|++|+|||++++.||+.+ |..++..|-
T Consensus 186 ~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 186 SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred hHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 44445555554 45689999999999999999999998 888887765
No 195
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.16 E-value=0.0034 Score=53.89 Aligned_cols=28 Identities=18% Similarity=0.082 Sum_probs=26.7
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCC
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGY 212 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY 212 (261)
+|.-|.+.|..|+||||+++.|++.|+-
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 6889999999999999999999999985
No 196
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.15 E-value=0.0035 Score=54.77 Aligned_cols=50 Identities=12% Similarity=0.241 Sum_probs=34.6
Q ss_pred ecCCCCCCcccccchhHHHHHHHhhcC-Cc--eEEEEecCCCchhHHHHHHHHhc
Q 024881 159 KQDPELKWPDIVESWESLTAGSMQLLK-GT--SIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 159 K~d~~m~Wp~~~e~We~l~~g~~~lLk-G~--sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
|..+ ..|.++.-. +.+...+...++ |. ++.|+|++|+||||+++.+|..|
T Consensus 18 k~rp-~~~~~~~g~-~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 18 KYRP-ETLDEVYGQ-NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HTCC-SSGGGCCSC-HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HhCC-CcHHHhcCc-HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4455 556555422 345555555444 32 38999999999999999999987
No 197
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.13 E-value=0.0017 Score=61.75 Aligned_cols=70 Identities=11% Similarity=0.201 Sum_probs=46.2
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCcHHH-----HHHHh-CCCHH-------------HHHHhhCchhHHhhHHHH
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL-----LETFA-KQTID-------------SWMLAEGSDSVVNGECDV 248 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeL-----IEq~a-gkSI~-------------eIFaeeGE~~FRelEs~V 248 (261)
-|+|+|++|+||||++..||++++..+++.|.+ +.-.| +-+.. +.-..-....|.+.-.+.
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~~~ 83 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECMNA 83 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHHHH
Confidence 488999999999999999999999888887763 11011 11111 111222345677777777
Q ss_pred HHHHhcccC
Q 024881 249 LESLIMFEP 257 (261)
Q Consensus 249 Leels~~~~ 257 (261)
++++.+..+
T Consensus 84 i~~i~~~g~ 92 (409)
T 3eph_A 84 IEDIHRRGK 92 (409)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHhcCC
Confidence 877765443
No 198
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.10 E-value=0.0035 Score=49.74 Aligned_cols=41 Identities=15% Similarity=0.085 Sum_probs=20.9
Q ss_pred ccccchhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHH
Q 024881 168 DIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 168 ~~~e~We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
|++.....+...+.-..+..+|.++|++|+||||+.+.|..
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 5 DIFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -------------------CEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECCCCCCHHHHHHHHhc
Confidence 44444666666665555667899999999999999999986
No 199
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.10 E-value=0.0033 Score=50.96 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=22.6
Q ss_pred hcCCceEEEEecCCCchhHHHHHHH
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELA 207 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA 207 (261)
+-+|.-+.|+|++||||||+.+.||
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 4468889999999999999999988
No 200
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.01 E-value=0.0051 Score=53.56 Aligned_cols=34 Identities=9% Similarity=-0.061 Sum_probs=29.7
Q ss_pred HHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 176 LTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 176 l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+..++. .-+|..+.|+|.+||||||+.+.|+..+
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 566776 7788899999999999999999999865
No 201
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.00 E-value=0.0025 Score=55.83 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=30.0
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHH
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDe 219 (261)
..|.-|.|+|++|+||||++.+||++.+ .++..|.
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 4677899999999999999999999976 7776653
No 202
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.96 E-value=0.004 Score=51.90 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=23.2
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
|..+.|+|.+|+||||+.+.||..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 5679999999999999999999987
No 203
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.96 E-value=0.0046 Score=52.65 Aligned_cols=29 Identities=14% Similarity=0.137 Sum_probs=26.2
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc---CC
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL---GY 212 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L---gY 212 (261)
++|.-|.+.|..||||||+++.|++.| ||
T Consensus 1 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 1 MRSKYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp -CCCEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 478899999999999999999999988 66
No 204
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.94 E-value=0.0063 Score=50.93 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=33.6
Q ss_pred ecCCCCCCcccccchhHHHHHHHhhcCCc---eEEEEecCCCchhHHHHHHHHhc
Q 024881 159 KQDPELKWPDIVESWESLTAGSMQLLKGT---SIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 159 K~d~~m~Wp~~~e~We~l~~g~~~lLkG~---sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
|..+ ..|.+++-. +.+.+-+.+.++.. +++|.|+.|+|||++++.+|+.+
T Consensus 10 k~~p-~~~~~~~g~-~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 10 KYRP-RTLDEVVGQ-DEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp TTSC-SSGGGSCSC-HHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred hcCC-CCHHHHhCC-HHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 3444 555555422 23344444444322 59999999999999999999987
No 205
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.92 E-value=0.0056 Score=49.01 Aligned_cols=26 Identities=19% Similarity=0.132 Sum_probs=23.1
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+|.-+.|+|.+|+||||+.+.||..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56779999999999999999999743
No 206
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.92 E-value=0.0074 Score=53.54 Aligned_cols=46 Identities=17% Similarity=0.090 Sum_probs=34.0
Q ss_pred hhHHHHHHHhhc----------CCceEEEEecCCCchhHHHHHHHHhc----CCC--ccCcH
Q 024881 173 WESLTAGSMQLL----------KGTSIFLVGDSTEVNEKVALELAVGL----GYT--PLSTK 218 (261)
Q Consensus 173 We~l~~g~~~lL----------kG~sIyLVGmmGsGKSTVGr~LA~~L----gY~--fvDTD 218 (261)
|+.+...+.++| +|..|.|+|.+|+||||+...||..+ |+. ++|.|
T Consensus 82 ~~~~~~~l~~~l~~~~~~~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 82 VGKLQEILCDMLPSADKWQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp HHHHHHHHHTTSCCGGGSCCCCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred HHHHHHHHHHHhCCcccccccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 556666666554 57789999999999999999999654 543 45554
No 207
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.92 E-value=0.0047 Score=53.62 Aligned_cols=30 Identities=10% Similarity=0.037 Sum_probs=25.5
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
..++|.-|.+.|..|+||||+++.|++.|+
T Consensus 23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 23 NAMNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp ---CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346788999999999999999999999884
No 208
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.0036 Score=59.29 Aligned_cols=30 Identities=10% Similarity=0.075 Sum_probs=27.8
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT 217 (261)
-|.|.|++|+|||.+++.+|..+|.+|+..
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 499999999999999999999999998754
No 209
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.0037 Score=59.36 Aligned_cols=32 Identities=16% Similarity=0.030 Sum_probs=28.6
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT 217 (261)
...|.|.|++|+|||.+++.+|..+|.+|+..
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 34699999999999999999999999998653
No 210
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.89 E-value=0.005 Score=48.92 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=23.7
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|..+.|+|.+|+||||+++.||..+
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3457789999999999999999999654
No 211
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.89 E-value=0.0056 Score=52.79 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=27.9
Q ss_pred HHHHHHHhhc----CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 175 SLTAGSMQLL----KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 175 ~l~~g~~~lL----kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.+.+-+.+.+ ++.++.|+|++|+||||+++.||..|
T Consensus 21 ~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 21 ELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp HHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred HHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4445555555 33459999999999999999999965
No 212
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.88 E-value=0.0038 Score=63.61 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=40.3
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCcc--CcHHHHHHHhCCC---HHHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPL--STKELLETFAKQT---IDSWML 234 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fv--DTDeLIEq~agkS---I~eIFa 234 (261)
..|.|.|++|+|||.+|+.+|..+|.+|+ +..+|+.+..|.| |.++|.
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~ 564 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFD 564 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHH
T ss_pred ceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHH
Confidence 35899999999999999999999999987 5568888887776 555664
No 213
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.0042 Score=59.06 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=32.2
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCc--HHHHHHHhC
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAK 226 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT--DeLIEq~ag 226 (261)
..|.|.|++|+|||.+++.+|..+|.+|+.. .+++.+..|
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~G 257 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIG 257 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccch
Confidence 4699999999999999999999999998753 445444433
No 214
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.78 E-value=0.0051 Score=55.04 Aligned_cols=27 Identities=19% Similarity=-0.053 Sum_probs=24.3
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
-+|.-|.|+|.+||||||+++.|+..+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 457789999999999999999999876
No 215
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.77 E-value=0.0027 Score=64.63 Aligned_cols=48 Identities=17% Similarity=0.183 Sum_probs=36.6
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCcc--CcHHHHHHHhCCC---HHHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPL--STKELLETFAKQT---IDSWML 234 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fv--DTDeLIEq~agkS---I~eIFa 234 (261)
..|.|.|++|+|||+++|.+|..+|.+|+ |..+++.+..|.+ +.++|.
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~ 291 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFE 291 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHH
Confidence 46999999999999999999999999986 4456665544433 444444
No 216
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.74 E-value=0.0061 Score=58.44 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=29.2
Q ss_pred HHHHhhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 178 AGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 178 ~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
.-...++.|.+|.|+|++|+|||++++.||..++
T Consensus 33 ~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 33 LCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp HHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred HHHHHHhcCCeeEeecCchHHHHHHHHHHHHHHh
Confidence 3344567788999999999999999999999885
No 217
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.73 E-value=0.0054 Score=56.84 Aligned_cols=35 Identities=17% Similarity=0.092 Sum_probs=30.2
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD 216 (261)
..-+|..|.|+|++|+||||+++.||..++..++.
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 34467789999999999999999999999877665
No 218
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.72 E-value=0.0051 Score=57.67 Aligned_cols=32 Identities=16% Similarity=0.001 Sum_probs=29.0
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCcH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTD 218 (261)
.+++|.|++|+||||+++.+|+.++..|+...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 47999999999999999999999999887654
No 219
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.72 E-value=0.0047 Score=54.78 Aligned_cols=40 Identities=15% Similarity=0.011 Sum_probs=29.9
Q ss_pred chhHHHHHHHhh-----cCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 172 SWESLTAGSMQL-----LKGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 172 ~We~l~~g~~~l-----LkG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
.-+.|.+-+.+. =+|.-|.|+|.+||||||+++.|+..|+
T Consensus 12 ~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 12 TIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp HHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 344455555442 2355699999999999999999999886
No 220
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.71 E-value=0.0047 Score=52.72 Aligned_cols=27 Identities=11% Similarity=0.028 Sum_probs=23.3
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
-+|.-+.|+|.+||||||+.+.||..+
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 356679999999999999999998654
No 221
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.68 E-value=0.0071 Score=49.68 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=22.0
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+|.-++++|+||+||||.+..+|.++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 57778899999999999997777654
No 222
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.67 E-value=0.0055 Score=51.83 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=23.2
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
-+|.-+.|+|.+||||||+.+.||..+
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356668999999999999999998655
No 223
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.66 E-value=0.0056 Score=58.19 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=30.4
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCccC--cHHHH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELL 221 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD--TDeLI 221 (261)
..+|+|.|.+|+|||++++.+|..+|.+|+. ..++.
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~ 275 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhh
Confidence 3579999999999999999999999988874 34444
No 224
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.64 E-value=0.0048 Score=52.79 Aligned_cols=27 Identities=19% Similarity=0.137 Sum_probs=24.7
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
.+.+|+|.|.+|+|||++++.+|+.++
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 345799999999999999999999997
No 225
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.62 E-value=0.0046 Score=61.92 Aligned_cols=33 Identities=18% Similarity=0.085 Sum_probs=29.4
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT 217 (261)
.|.+|.|+|.+|+||||+++.||..++..|+..
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v 269 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEE
Confidence 467899999999999999999999999887643
No 226
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.60 E-value=0.0065 Score=51.31 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=24.0
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHh
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
+-+|..+.|+|.+||||||+.+.||..
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999999999853
No 227
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.58 E-value=0.0054 Score=58.12 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=31.1
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCc--HHHHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETF 224 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT--DeLIEq~ 224 (261)
..|.|.|++|+|||.+++.+|..+|.+|+.. .+++.+.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~ 222 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKY 222 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSS
T ss_pred CceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccc
Confidence 4599999999999999999999999999653 3444433
No 228
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.53 E-value=0.0079 Score=55.73 Aligned_cols=37 Identities=8% Similarity=0.166 Sum_probs=29.9
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc-----CCC--ccCcHHHHH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL-----GYT--PLSTKELLE 222 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L-----gY~--fvDTDeLIE 222 (261)
+.+++|.|++|+||||+++.+|..+ |+. +++..++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~ 173 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN 173 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH
Confidence 5689999999999999999999988 655 446655543
No 229
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.52 E-value=0.0081 Score=51.55 Aligned_cols=44 Identities=14% Similarity=0.030 Sum_probs=30.7
Q ss_pred HHHHHHHhhcC-Cc--eEEEE-ecCCCchhHHHHHHHHhcCCCccCcH
Q 024881 175 SLTAGSMQLLK-GT--SIFLV-GDSTEVNEKVALELAVGLGYTPLSTK 218 (261)
Q Consensus 175 ~l~~g~~~lLk-G~--sIyLV-GmmGsGKSTVGr~LA~~LgY~fvDTD 218 (261)
.+.+-+.+.++ |. ++||+ |++|+|||++++.+|+.+|+.++..+
T Consensus 33 ~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~ 80 (324)
T 3u61_B 33 FDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80 (324)
T ss_dssp HHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 33444444443 22 56665 55999999999999999998887543
No 230
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.52 E-value=0.013 Score=51.76 Aligned_cols=45 Identities=11% Similarity=0.031 Sum_probs=34.8
Q ss_pred cccchhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCC
Q 024881 169 IVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYT 213 (261)
Q Consensus 169 ~~e~We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~ 213 (261)
..+.|..+...+.+-=-+-.+.|.|+.|+|||++++.+|+.|+-.
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 667787777776643223348899999999999999999999753
No 231
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.51 E-value=0.011 Score=46.47 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=23.3
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCC
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGY 212 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY 212 (261)
.| -..|+|.+|+||||+.+.|+-.|+-
T Consensus 26 ~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 26 KG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 45 3679999999999999999998864
No 232
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.50 E-value=0.0063 Score=52.01 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=24.0
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|.-+.|+|.+||||||+.+.||..+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456779999999999999999998764
No 233
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.49 E-value=0.0069 Score=52.43 Aligned_cols=35 Identities=11% Similarity=0.247 Sum_probs=30.4
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHH
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDe 219 (261)
..|.-|.|.|++|+||||++.+|.++ |++++.-|.
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD~ 48 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDR-GHQLVCDDV 48 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHT-TCEEEESSE
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCCE
Confidence 46788999999999999999999986 998886553
No 234
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.48 E-value=0.0078 Score=53.61 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=29.9
Q ss_pred hhHHHHHHHhhc--------------CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 173 WESLTAGSMQLL--------------KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 173 We~l~~g~~~lL--------------kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
|+.+...+.++| +|.-+.|||.+|+||||+.+.||..+
T Consensus 73 ~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 73 KDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 566666665554 35568899999999999999999876
No 235
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.46 E-value=0.014 Score=50.29 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=23.1
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCC
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGY 212 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY 212 (261)
.+.|.|+.|+|||++++.+|+.++.
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999975
No 236
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.46 E-value=0.0081 Score=51.63 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=23.5
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHh
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
+-+|.-+.|+|.+|+||||+.+.||..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 446667999999999999999999975
No 237
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.45 E-value=0.0067 Score=51.82 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=23.7
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|.-+.|+|.+||||||+.+.||..+
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456678999999999999999998764
No 238
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.45 E-value=0.0068 Score=51.43 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=24.1
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|..+.|+|.+||||||+.+.||..+
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467779999999999999999999764
No 239
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.45 E-value=0.0099 Score=49.80 Aligned_cols=23 Identities=17% Similarity=0.069 Sum_probs=21.9
Q ss_pred eEEEEecCCCchhHHHHHHHHhc
Q 024881 188 SIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+++|.|+.|+|||++++.+|+.+
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 59999999999999999999987
No 240
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.44 E-value=0.0085 Score=53.55 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=23.3
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+|..|.|||.+|+||||+.+.||..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46789999999999999999999765
No 241
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.43 E-value=0.0068 Score=51.77 Aligned_cols=29 Identities=14% Similarity=-0.010 Sum_probs=24.5
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+||||||+.+.||..+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 24 EAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34467779999999999999999998654
No 242
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.42 E-value=0.0083 Score=54.28 Aligned_cols=35 Identities=11% Similarity=0.026 Sum_probs=28.3
Q ss_pred HHHHHH-hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 176 LTAGSM-QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 176 l~~g~~-~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+..++. .+=+|..+.|||.+|+||||+.+.|+..+
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 344444 44578889999999999999999999875
No 243
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.41 E-value=0.007 Score=52.15 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=23.9
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|..+.|+|.+||||||+.+.||..+
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456679999999999999999998765
No 244
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=95.39 E-value=0.14 Score=39.35 Aligned_cols=75 Identities=12% Similarity=0.144 Sum_probs=60.2
Q ss_pred EEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCc----------ceeeeecccccCCCCCCceeeEE-ec
Q 024881 82 EFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGS----------FITLIETNQLFDKIKPTETIWYI-DE 150 (261)
Q Consensus 82 ~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~----------~~tlId~g~L~~kIk~~Et~W~I-dD 150 (261)
+..++...+.|.+.||+ .+..||.|.++++.|.|.-++... +..-+ .|++.|.++.-.-.+ +|
T Consensus 6 ~i~e~~~~~~v~~dlPG---~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~---~LP~~vd~~~i~A~~s~~ 79 (106)
T 3l1e_A 6 EVRSDRDKFVIFLDVKH---FSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRY---RLPSNVDQSALSCSLSAD 79 (106)
T ss_dssp EEEECSSEEEEEEECTT---SCGGGEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEE---ECCTTBCTTSCEEEECTT
T ss_pred EEEEcCCEEEEEEECCC---CChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEE---ECCCCcChhHcEEEECCC
Confidence 35578889999999998 688999999999999998865311 21112 478889998888889 89
Q ss_pred CeEEEEEEecCC
Q 024881 151 DQLVINLKKQDP 162 (261)
Q Consensus 151 ~~lvv~L~K~d~ 162 (261)
..|.|.+.|..+
T Consensus 80 GvL~I~~PK~~~ 91 (106)
T 3l1e_A 80 GMLTFSGPKIPS 91 (106)
T ss_dssp SEEEEEEEBCCC
T ss_pred CEEEEEEEccCc
Confidence 999999999876
No 245
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.38 E-value=0.0072 Score=52.49 Aligned_cols=27 Identities=15% Similarity=0.069 Sum_probs=23.4
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
-+|.-+.|+|.+||||||+.+.||..+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356668999999999999999999765
No 246
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.38 E-value=0.012 Score=57.14 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=26.2
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPL 215 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fv 215 (261)
+++|+|++|+|||++++.||+.+|.+|+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~ 517 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELL 517 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEE
Confidence 6999999999999999999999997765
No 247
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.37 E-value=0.0091 Score=53.30 Aligned_cols=39 Identities=10% Similarity=0.287 Sum_probs=28.9
Q ss_pred hhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCC
Q 024881 173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGY 212 (261)
Q Consensus 173 We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY 212 (261)
|+.|-..+.+.| |..+.|||.+||||||+.+.||..+..
T Consensus 158 ~~~v~~~v~~~l-g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 158 WKFIPKEARPFF-AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp GGGSCTTTGGGT-CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hhhCCHHHHHhh-hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 444333333333 677999999999999999999998654
No 248
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.34 E-value=0.0076 Score=51.97 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=24.5
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|.-+.|+|.+||||||+.+.||..+
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 29 SVNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34467779999999999999999998655
No 249
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.33 E-value=0.0077 Score=52.66 Aligned_cols=28 Identities=14% Similarity=0.168 Sum_probs=23.6
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|.-+.|+|.+||||||+.+.||..+
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3356668999999999999999998755
No 250
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.0067 Score=58.68 Aligned_cols=39 Identities=21% Similarity=0.195 Sum_probs=31.7
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCccC--cHHHHHHH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLETF 224 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD--TDeLIEq~ 224 (261)
.+.|.|.|++|+|||.+++.+|..+|.+|+. ..+++.+.
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~ 283 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKY 283 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCS
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhccc
Confidence 3569999999999999999999999999864 34444433
No 251
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=95.31 E-value=0.01 Score=51.45 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=28.0
Q ss_pred eEEEEecCCCchhHHHHHHHHhcC---CCccCcHHHHH
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLG---YTPLSTKELLE 222 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~Lg---Y~fvDTDeLIE 222 (261)
-|.++||+||||++|++.|.+++| +..+.--+.|-
T Consensus 13 II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK 50 (202)
T 3ch4_B 13 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLK 50 (202)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHH
Confidence 488999999999999999999896 55555555553
No 252
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.29 E-value=0.0097 Score=51.81 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=24.0
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|.-+.|+|.+||||||+.+.||..+
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456679999999999999999999864
No 253
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.28 E-value=0.018 Score=46.30 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=33.1
Q ss_pred cccchhHHHHHHHhhc---CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 169 IVESWESLTAGSMQLL---KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 169 ~~e~We~l~~g~~~lL---kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+.+.++-....+.+++ +-..|.++|+.|+||||+...|+..+
T Consensus 18 ~~~~~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 18 ILKANKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4566666776666654 34579999999999999999999875
No 254
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.25 E-value=0.0085 Score=52.01 Aligned_cols=28 Identities=25% Similarity=0.190 Sum_probs=24.1
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|..+.|+|.+||||||+.+.|+..+
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3467779999999999999999998654
No 255
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.25 E-value=0.021 Score=48.01 Aligned_cols=36 Identities=8% Similarity=-0.016 Sum_probs=28.1
Q ss_pred HHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCC
Q 024881 177 TAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYT 213 (261)
Q Consensus 177 ~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~ 213 (261)
.+-+.+ +....++|.|+.|.|||++.+.+++.++..
T Consensus 22 l~~L~~-l~~~~v~i~G~~G~GKT~L~~~~~~~~~~~ 57 (357)
T 2fna_A 22 IEKLKG-LRAPITLVLGLRRTGKSSIIKIGINELNLP 57 (357)
T ss_dssp HHHHHH-TCSSEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred HHHHHH-hcCCcEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 334444 444579999999999999999999988653
No 256
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.24 E-value=0.0085 Score=52.41 Aligned_cols=28 Identities=29% Similarity=0.196 Sum_probs=24.0
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|..+.|+|.+||||||+.+.||..+
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456679999999999999999998765
No 257
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.23 E-value=0.02 Score=50.31 Aligned_cols=44 Identities=18% Similarity=0.157 Sum_probs=32.7
Q ss_pred chhHHHHHHHhhc-CCceEEEEecCCCchhHHHHHHHHhc---CCCcc
Q 024881 172 SWESLTAGSMQLL-KGTSIFLVGDSTEVNEKVALELAVGL---GYTPL 215 (261)
Q Consensus 172 ~We~l~~g~~~lL-kG~sIyLVGmmGsGKSTVGr~LA~~L---gY~fv 215 (261)
.+..+..-+.... .+.+|+|.|.+|+|||++++.++..+ +++|+
T Consensus 10 ~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v 57 (304)
T 1ojl_A 10 AMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLV 57 (304)
T ss_dssp HHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCC
T ss_pred HHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeE
Confidence 3455555555543 35689999999999999999999965 55554
No 258
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.23 E-value=0.016 Score=51.04 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=27.4
Q ss_pred HHHhhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 179 GSMQLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 179 g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.+.+.++|.-+.|+|.+|+||||+.+.|+ .+
T Consensus 158 ~L~~~l~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 158 ELVDYLEGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHTTTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHhhccCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 35577899999999999999999999999 55
No 259
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.20 E-value=0.0088 Score=52.84 Aligned_cols=28 Identities=11% Similarity=0.118 Sum_probs=23.4
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|.-+.|+|.+||||||+.+.|+..+
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3356669999999999999999998655
No 260
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.20 E-value=0.018 Score=52.38 Aligned_cols=24 Identities=17% Similarity=0.047 Sum_probs=22.6
Q ss_pred eEEEEecCCCchhHHHHHHHHhcC
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
-|.|+|.+||||||+++.|+..|+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 499999999999999999999986
No 261
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=95.18 E-value=0.16 Score=37.43 Aligned_cols=71 Identities=13% Similarity=0.202 Sum_probs=54.8
Q ss_pred cccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCC----------cceeeeecccccCCCCCCceeeEEe-cCe
Q 024881 84 SDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSG----------SFITLIETNQLFDKIKPTETIWYID-EDQ 152 (261)
Q Consensus 84 Tqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~----------~~~tlId~g~L~~kIk~~Et~W~Id-D~~ 152 (261)
+++-.+..|.+.||+ .+..||.|.++++.|+|.-++.. .+..-+ .|++.|.++.-.=.++ |..
T Consensus 3 ~E~~~~~~v~~dlPG---~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~F~R~~---~LP~~vd~~~i~A~~~~~Gv 76 (85)
T 3q9p_A 3 SHTADRWRVSLDVNH---FAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKY---TLPPGVDPTQVSSSLSPEGT 76 (85)
T ss_dssp CCCCCEEEEEEECTT---TCCSEEEEEEETTEEEEEEEEC-------CCCEEEEEEE---ECCTTCCGGGCEEEECTTSE
T ss_pred cCcCCEEEEEEECCC---CChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEE---ECCCCcChHHcEEEECCCCE
Confidence 356778999999998 78899999999999999887542 232222 3778888776666676 899
Q ss_pred EEEEEEec
Q 024881 153 LVINLKKQ 160 (261)
Q Consensus 153 lvv~L~K~ 160 (261)
|.|.+-|-
T Consensus 77 L~I~lPK~ 84 (85)
T 3q9p_A 77 LTVEAPMP 84 (85)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcC
Confidence 99999884
No 262
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.18 E-value=0.0091 Score=52.32 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=22.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+|.-+.|+|.+||||||+.+.||..+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45569999999999999999999765
No 263
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.17 E-value=0.0093 Score=51.76 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=24.5
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|..+.|+|.+|+||||+.+.||..+
T Consensus 22 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 22 EVRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34467778999999999999999998765
No 264
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.16 E-value=0.0093 Score=51.80 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=23.5
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|.-+.|+|.+||||||+.+.||..+
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3356678999999999999999998654
No 265
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=95.16 E-value=0.12 Score=39.29 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=60.2
Q ss_pred EEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCc-----c--eeeeecccccCCCCCCceeeEE-ecCeE
Q 024881 82 EFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGS-----F--ITLIETNQLFDKIKPTETIWYI-DEDQL 153 (261)
Q Consensus 82 ~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~-----~--~tlId~g~L~~kIk~~Et~W~I-dD~~l 153 (261)
.+.++..++.|++.||+ .+..||.|+++++.|.|.-++... . +..--.=.|++.|.++.-.-.+ +|..|
T Consensus 5 di~e~~~~~~v~~dlPG---~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~nGvL 81 (101)
T 2wj5_A 5 QVPTDPGYFSVLLDVKH---FSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVL 81 (101)
T ss_dssp CCCCCSSCEEEEEECTT---SCGGGEEEEEETTEEEEEEEEEECSSTTCCEEEEEEEEEECCTTBCTTCCEEEECTTSEE
T ss_pred EEEEeCCEEEEEEECCC---CcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHCEEEECCCCEE
Confidence 45677889999999998 677899999999999998866421 1 0001112578889998888889 89999
Q ss_pred EEEEEecCC
Q 024881 154 VINLKKQDP 162 (261)
Q Consensus 154 vv~L~K~d~ 162 (261)
.|.+.|...
T Consensus 82 ~I~lPK~~~ 90 (101)
T 2wj5_A 82 SIQATPASA 90 (101)
T ss_dssp EEEECBCCC
T ss_pred EEEEECCCc
Confidence 999999765
No 266
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.15 E-value=0.0093 Score=52.57 Aligned_cols=28 Identities=18% Similarity=0.067 Sum_probs=23.9
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|.-+.|+|.+||||||+.+.||..+
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3456679999999999999999999765
No 267
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.13 E-value=0.0099 Score=57.11 Aligned_cols=31 Identities=19% Similarity=0.112 Sum_probs=28.3
Q ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT 217 (261)
..|.|.|++|+|||.+++.+|..+|.+|+..
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 4599999999999999999999999998754
No 268
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.12 E-value=0.01 Score=56.96 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=26.2
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvD 216 (261)
.|+|+|++|+|||++++.+|..++.+|+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~~~~i~ 94 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEARVPFIT 94 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 49999999999999999999999877654
No 269
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.09 E-value=0.011 Score=53.52 Aligned_cols=30 Identities=10% Similarity=0.119 Sum_probs=26.2
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
..-+|.++.|+|.+||||||+.+.|+..+.
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 445788999999999999999999998754
No 270
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.08 E-value=0.0095 Score=50.71 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=23.0
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
-+|.-+.|+|.+||||||+.+.||..+
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345568999999999999999998754
No 271
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.06 E-value=0.01 Score=51.66 Aligned_cols=28 Identities=11% Similarity=0.100 Sum_probs=24.0
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|.-+.|+|.+||||||+.+.||..+
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3466679999999999999999998765
No 272
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.03 E-value=0.013 Score=49.30 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=45.8
Q ss_pred eEEEEecCCCchhHHHHHHHHhc-----------------------CCCccCcHHHHHHHh---------------CCCH
Q 024881 188 SIFLVGDSTEVNEKVALELAVGL-----------------------GYTPLSTKELLETFA---------------KQTI 229 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~L-----------------------gY~fvDTDeLIEq~a---------------gkSI 229 (261)
-|+|+|++|+||+|+.+.|.+.+ .|.|++-++.-+... |-+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~ 82 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV 82 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeec
Confidence 48999999999999999997653 377888777665543 3333
Q ss_pred HHHH--HhhCchhHHhhHHHHHHHHhc
Q 024881 230 DSWM--LAEGSDSVVNGECDVLESLIM 254 (261)
Q Consensus 230 ~eIF--aeeGE~~FRelEs~VLeels~ 254 (261)
+++- .++|....-+++-+.+.++-.
T Consensus 83 ~~v~~~l~~g~~vil~id~~g~~~~k~ 109 (186)
T 1ex7_A 83 ASVKQVSKSGKTCILDIDMQGVKSVKA 109 (186)
T ss_dssp HHHHHHHHHTSEEEEECCHHHHHHHHT
T ss_pred ceeeehhhCCCEEEecCCHHHHHHHHH
Confidence 3322 345666666666666666654
No 273
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.02 E-value=0.011 Score=51.24 Aligned_cols=28 Identities=18% Similarity=0.027 Sum_probs=23.5
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|.-+.|+|.+||||||+.+.||..+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456678999999999999999998653
No 274
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.00 E-value=0.0066 Score=60.83 Aligned_cols=33 Identities=12% Similarity=0.048 Sum_probs=29.6
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT 217 (261)
.|.++.|+|++|+|||++++.||..++..|+..
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 542 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 567899999999999999999999999888653
No 275
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.99 E-value=0.014 Score=52.95 Aligned_cols=26 Identities=27% Similarity=0.165 Sum_probs=23.6
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+|.-|.|||.+|+||||+.+.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999999765
No 276
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.97 E-value=0.023 Score=50.94 Aligned_cols=38 Identities=24% Similarity=0.190 Sum_probs=30.4
Q ss_pred hhHHHHHHHhhcC-----------CceEEEEecCCCchhHHHHHHHHhc
Q 024881 173 WESLTAGSMQLLK-----------GTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 173 We~l~~g~~~lLk-----------G~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
|+.|...+.++|. |.-|.++|.+|+||||+.+.||..+
T Consensus 80 ~~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 80 LESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp HHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 6666666666653 3458899999999999999999876
No 277
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.96 E-value=0.015 Score=47.00 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=22.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
+|.-+.|+|.+|+||||+++.||..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5677999999999999999999983
No 278
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.96 E-value=0.012 Score=53.94 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=30.0
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDe 219 (261)
.|.-|.|+|++|+||||++..|.++ |++++.-|.
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~ 176 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLVADDN 176 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCCe
Confidence 4889999999999999999999887 999985553
No 279
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.94 E-value=0.015 Score=46.20 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=27.8
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCC--ccCcHH
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYT--PLSTKE 219 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~--fvDTDe 219 (261)
+-+|.-+.|+|.+|+||||+++.||..-|.. ++|+++
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 3457779999999999999999999744432 455543
No 280
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.91 E-value=0.015 Score=51.03 Aligned_cols=32 Identities=22% Similarity=0.178 Sum_probs=27.3
Q ss_pred HHHhhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 179 GSMQLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 179 g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.+.+.++|.-+.|+|.+|+||||+.+.|+..+
T Consensus 162 ~lf~~l~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 162 ELKEYLKGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHSSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHhcCCeEEEECCCCCcHHHHHHHhcccc
Confidence 34567789999999999999999999998654
No 281
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=94.89 E-value=0.12 Score=38.41 Aligned_cols=72 Identities=13% Similarity=0.180 Sum_probs=53.7
Q ss_pred ccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCc----------ceeeeecccccCCCCCCceeeEE-ecCeE
Q 024881 85 DGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGS----------FITLIETNQLFDKIKPTETIWYI-DEDQL 153 (261)
Q Consensus 85 qtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~----------~~tlId~g~L~~kIk~~Et~W~I-dD~~l 153 (261)
++-..+.|.+.||+ .+..||.|.++++.|.|.-++... +..-+ .|.+.|.++.-.-.+ +|..|
T Consensus 3 ~~~~~~~v~~dlPG---~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~---~LP~~vd~~~i~A~~~~~GvL 76 (90)
T 2y1y_A 3 MEKDRFSVNLDVKH---FSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKY---RIPADVDPLTITSSMSSDGVL 76 (90)
T ss_dssp ---CCEEEEEECTT---SCGGGEEEEEETTEEEEEEEEEEEECSSSEEEEEEEEEE---ECCTTBCGGGCEEEECTTSEE
T ss_pred cCCCEEEEEEECCC---CcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEE---ECCCCcChhHcEEEECCCCEE
Confidence 35567899999998 677899999999999998875321 21112 477888888777789 89999
Q ss_pred EEEEEecCC
Q 024881 154 VINLKKQDP 162 (261)
Q Consensus 154 vv~L~K~d~ 162 (261)
.|.+.|...
T Consensus 77 ~I~~pK~~~ 85 (90)
T 2y1y_A 77 TVNGPRKQV 85 (90)
T ss_dssp EEEECBC--
T ss_pred EEEEEcCCC
Confidence 999998764
No 282
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.87 E-value=0.015 Score=55.69 Aligned_cols=38 Identities=11% Similarity=0.057 Sum_probs=30.5
Q ss_pred HHHHH-hhcCCceEEEEecCCCchhHHHHHHHHhcCCCc
Q 024881 177 TAGSM-QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTP 214 (261)
Q Consensus 177 ~~g~~-~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~f 214 (261)
...+. .+-.|.++.|+|++|+||||+++.||..++...
T Consensus 50 l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 50 VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 34443 445678999999999999999999999997543
No 283
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.79 E-value=0.016 Score=53.40 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=30.4
Q ss_pred hhHHHHHHHhhc--------------CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 173 WESLTAGSMQLL--------------KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 173 We~l~~g~~~lL--------------kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
|+.|...+.++| +|.-|.|||.+|+||||+.+.||..+
T Consensus 130 ~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 130 KDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 666666666555 35568899999999999999999876
No 284
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.78 E-value=0.01 Score=53.38 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=22.4
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+|..+.|||.+||||||+.+.|+..+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 45569999999999999999998654
No 285
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.77 E-value=0.019 Score=44.92 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=22.0
Q ss_pred CCceEEEEecCCCchhHHHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
+|..|.|||.+|+||||+.+.|+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999864
No 286
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.77 E-value=0.01 Score=59.13 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=27.8
Q ss_pred HHHHHHHhhc---CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 175 SLTAGSMQLL---KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 175 ~l~~g~~~lL---kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
..+.-+.+.| ...+++|+|.+|+|||++++.||+.+
T Consensus 177 ~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 177 EEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp HHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3444444444 23479999999999999999999998
No 287
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.75 E-value=0.01 Score=48.87 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=21.2
Q ss_pred eEEEEecCCCchhHHHHHHHHhc
Q 024881 188 SIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.|.|||.+||||||+.+.|+..+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999875
No 288
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.74 E-value=0.011 Score=57.45 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=24.7
Q ss_pred eEEEEecCCCchhHHHHHHHHhcCCCc
Q 024881 188 SIFLVGDSTEVNEKVALELAVGLGYTP 214 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~LgY~f 214 (261)
||.|+|++|+|||++++.+|+.++..+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~ 355 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAV 355 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEE
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCce
Confidence 899999999999999999999997443
No 289
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.74 E-value=0.031 Score=47.18 Aligned_cols=55 Identities=15% Similarity=0.037 Sum_probs=44.6
Q ss_pred cchhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCC---ccCcHHHHHHHh
Q 024881 171 ESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYT---PLSTKELLETFA 225 (261)
Q Consensus 171 e~We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~---fvDTDeLIEq~a 225 (261)
+-.+.=..++..++++.++.|+|++|+|||.++..++..++.+ ++.+.+|++|..
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~ 150 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWK 150 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHH
Confidence 3466667778888999999999999999999999999998654 356778877754
No 290
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=94.71 E-value=0.0068 Score=56.06 Aligned_cols=56 Identities=18% Similarity=-0.067 Sum_probs=41.2
Q ss_pred HHhhcCCceEEEEecCCCchhHHH-HHHHHhcCCC--ccCcHHHHH---HHhC-CCHHHHHHh
Q 024881 180 SMQLLKGTSIFLVGDSTEVNEKVA-LELAVGLGYT--PLSTKELLE---TFAK-QTIDSWMLA 235 (261)
Q Consensus 180 ~~~lLkG~sIyLVGmmGsGKSTVG-r~LA~~LgY~--fvDTDeLIE---q~ag-kSI~eIFae 235 (261)
.+...+|.-|+|-|..|+||||+. +.|++.|+.. .+=+.|=.. ..-| ..|.+++.+
T Consensus 6 ~~~~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~g~vv~trEPgg~w~t~~g~e~lr~i~l~ 68 (341)
T 1osn_A 6 TDVKMGVLRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDAICGIYGT 68 (341)
T ss_dssp --CCEEEEEEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEECCCHHHHTTBTTBCHHHHHHHH
T ss_pred ccccCCceEEEEeCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCccccCcccHHHHHHHHhc
Confidence 345678999999999999999999 9999999865 444555444 2335 667777753
No 291
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.71 E-value=0.017 Score=56.13 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=24.5
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.+.+++|+|.+|+|||++++.||+.+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999999988
No 292
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=94.70 E-value=0.013 Score=53.99 Aligned_cols=52 Identities=15% Similarity=0.053 Sum_probs=38.0
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCC--ccCcHHHHH---HHhC-CCHHHHHH
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYT--PLSTKELLE---TFAK-QTIDSWML 234 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~--fvDTDeLIE---q~ag-kSI~eIFa 234 (261)
..+|+-|++-|..|+||||+++.||+.|+.. .+-+.|=.. ..-| ..|.++..
T Consensus 4 ~~~~~fI~~EG~dGaGKTT~~~~La~~L~~~~~v~~trEPg~~w~~~~g~e~ir~~~~ 61 (334)
T 1p6x_A 4 MVTIVRIYLDGVYGIGKSTTGRVMASAASGGSPTLYFPEPMAYWRTLFETDVISGIYD 61 (334)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHSGGGCSSCEEEECCCHHHHHTSSSSCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccCCcEEEEeCCCCccccccchHHHHHHHH
Confidence 4578889999999999999999999999764 333444332 2334 66677764
No 293
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=94.68 E-value=0.009 Score=56.11 Aligned_cols=58 Identities=9% Similarity=0.004 Sum_probs=35.6
Q ss_pred HHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCC-ccCcHHHHHHH---hC-CCHHHHHHh
Q 024881 178 AGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYT-PLSTKELLETF---AK-QTIDSWMLA 235 (261)
Q Consensus 178 ~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~-fvDTDeLIEq~---ag-kSI~eIFae 235 (261)
.|-.+..+|+-|+|-|.-|+||||+++.||+.|+.. ++-+.|=...- .| ..|.++..+
T Consensus 41 ~~~~~~~~~~fIt~EG~dGsGKTT~~~~Lae~L~~~gvv~trEPg~~w~~~~gn~~Lr~~yld 103 (376)
T 1of1_A 41 RPEQKMPTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTT 103 (376)
T ss_dssp -----CCEEEEEEECSSTTSSHHHHHHHHHC----CCEEEECCCHHHHHTTSSSCHHHHHHHH
T ss_pred ccccCCCCceEEEEECCCCCCHHHHHHHHHHHhhhCCEEEEeCCCCccccccchHHHHHHHhC
Confidence 455667889999999999999999999999998632 44444433322 23 566677653
No 294
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.64 E-value=0.019 Score=42.58 Aligned_cols=25 Identities=8% Similarity=0.312 Sum_probs=21.6
Q ss_pred CCceEEEEecCCCchhHHHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
+..+|.++|..|+||||+...|...
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcC
Confidence 4468999999999999999888754
No 295
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.64 E-value=0.023 Score=45.83 Aligned_cols=26 Identities=8% Similarity=0.087 Sum_probs=22.4
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHh
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
-+|..+.|+|.+|+||||++..+|..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 36778999999999999999888764
No 296
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.63 E-value=0.021 Score=42.13 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=21.2
Q ss_pred CceEEEEecCCCchhHHHHHHHHh
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
-.+|.++|..|+||||+...|+..
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999765
No 297
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.62 E-value=0.017 Score=51.40 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=23.9
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|..+.|+|.+|+||||+.+.|+..+
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3356678999999999999999998764
No 298
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.56 E-value=0.0096 Score=47.09 Aligned_cols=28 Identities=14% Similarity=0.084 Sum_probs=23.9
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHh
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
..-+|..|.|+|.+|+||||+.+.|+..
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4557889999999999999999888744
No 299
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.53 E-value=0.022 Score=47.81 Aligned_cols=31 Identities=19% Similarity=0.154 Sum_probs=25.7
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc--CCCccC
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL--GYTPLS 216 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L--gY~fvD 216 (261)
|.=|.+-|.-||||||..+.|++.| ||..+-
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~ 34 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 34 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEE
Confidence 3347788999999999999999999 776553
No 300
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.53 E-value=0.018 Score=49.66 Aligned_cols=23 Identities=13% Similarity=-0.031 Sum_probs=20.5
Q ss_pred eEEEEecCCCchhHHHHHHHHhc
Q 024881 188 SIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
-+.|+|.+||||||+.+.||..+
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999654
No 301
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}
Probab=94.51 E-value=0.095 Score=43.45 Aligned_cols=87 Identities=7% Similarity=0.128 Sum_probs=70.2
Q ss_pred CCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCC---CceeeEEecCeEE
Q 024881 78 TSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKP---TETIWYIDEDQLV 154 (261)
Q Consensus 78 t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~---~Et~W~IdD~~lv 154 (261)
|+.|.=||+-..|-|.|-+|.. ..+..++.++++++-+.+..+..- ++ + .|..+|.- ....|-.|...+.
T Consensus 3 TP~F~itQd~e~viV~Ik~P~~-~~~~sdiei~v~~~~F~F~~~PYy-LR--L---~LP~~V~e~~~~kA~YD~d~~~~~ 75 (134)
T 2k8q_A 3 TPRFSITQDEEFIFLKIFISNI-RFSAVGLEIIIQENMIIFHLSPYY-LR--L---RFPHELIDDERSTAQYDSKDECIN 75 (134)
T ss_dssp CSEEEEEECSSEEEEEEECCSS-CCCSSSCCCEECSSSEEECSSSSC-EE--E---CCSSCEECCSSCEEEEETTTTEEE
T ss_pred CceEEEEECCCEEEEEEEcCcc-ccCccccEEEEeCCEEEEecCCeE-EE--e---cCCCeeecCCCcceeEeccCCEEE
Confidence 6789999999999999999993 224899999999999999888773 32 2 35566633 3467888889999
Q ss_pred EEEEecCCCCCCccccc
Q 024881 155 INLKKQDPELKWPDIVE 171 (261)
Q Consensus 155 v~L~K~d~~m~Wp~~~e 171 (261)
|.|.|.++--.+||+.-
T Consensus 76 VtLpK~~~Ge~F~dLD~ 92 (134)
T 2k8q_A 76 VKVAKLNKNEYFEDLDL 92 (134)
T ss_dssp EEEEESSTTCCCSSTTC
T ss_pred EEEeCCCCCCCCCCccc
Confidence 99999999889988763
No 302
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.48 E-value=0.021 Score=52.01 Aligned_cols=28 Identities=11% Similarity=0.010 Sum_probs=25.0
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.-+|..+.|+|.+||||||+.+.|+..+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4578889999999999999999999865
No 303
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.48 E-value=0.025 Score=43.10 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=22.3
Q ss_pred HHhhcCCceEEEEecCCCchhHHHHHHHHh
Q 024881 180 SMQLLKGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 180 ~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
.+...+-.+|.++|+.|+||||+...|...
T Consensus 2 s~~~~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 2 SMSASRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp -----CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHhcC
Confidence 344456678999999999999999988764
No 304
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.47 E-value=0.025 Score=48.11 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=24.7
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|.-+.|+|.+|+||||+++.+|..+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5688889999999999999999998644
No 305
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.47 E-value=0.016 Score=50.38 Aligned_cols=25 Identities=8% Similarity=0.038 Sum_probs=22.3
Q ss_pred CceEEE--EecCCCchhHHHHHHHHhc
Q 024881 186 GTSIFL--VGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 186 G~sIyL--VGmmGsGKSTVGr~LA~~L 210 (261)
+..++| +|+.|+|||++++.+++.+
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 456888 8999999999999999887
No 306
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.46 E-value=0.025 Score=47.49 Aligned_cols=30 Identities=10% Similarity=-0.046 Sum_probs=25.1
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc---CCCc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTP 214 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L---gY~f 214 (261)
+|.=++++|.||+||||.+..+|.++ |+..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV 39 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKI 39 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEE
Confidence 46668899999999999999998887 6543
No 307
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.43 E-value=0.018 Score=50.45 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=22.4
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
|..+.|+|.+||||||+.+.||..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 6679999999999999999998654
No 308
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.41 E-value=0.029 Score=51.93 Aligned_cols=60 Identities=18% Similarity=0.024 Sum_probs=41.8
Q ss_pred CeEEEEEEecCCCCCCc-ccccchhHH------------------HHHHHhhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 151 DQLVINLKKQDPELKWP-DIVESWESL------------------TAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 151 ~~lvv~L~K~d~~m~Wp-~~~e~We~l------------------~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+..+|-|-|.|---+.. .-.+.|... +..+...++|..+.|+|.+|+||||+.+.|+..+
T Consensus 161 ~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 161 VEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp CEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBTHHHHHHHHTTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcCHHHHHHhcCCCEEEEECCCCccHHHHHHHHhccc
Confidence 77889999998511110 002233222 3456677899999999999999999999998544
No 309
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.40 E-value=0.015 Score=52.25 Aligned_cols=35 Identities=6% Similarity=0.073 Sum_probs=28.0
Q ss_pred HHHHHH-hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 176 LTAGSM-QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 176 l~~g~~-~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+..++. ..-.|.++.|+|.+||||||+.+.|+..+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444 33468899999999999999999999875
No 310
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.39 E-value=0.033 Score=43.84 Aligned_cols=61 Identities=13% Similarity=0.135 Sum_probs=47.2
Q ss_pred hhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhc---------CC---CccCcHHHHHHHhCCCHHHHH
Q 024881 173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL---------GY---TPLSTKELLETFAKQTIDSWM 233 (261)
Q Consensus 173 We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L---------gY---~fvDTDeLIEq~agkSI~eIF 233 (261)
++.=...+..+++|.++.+++.+|+|||.++..++..+ +. -.+.+.+|++|...+.+.++.
T Consensus 35 ~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 35 RPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred hHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 77777788888999999999999999999998888754 22 245788898885445555554
No 311
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.38 E-value=0.027 Score=48.07 Aligned_cols=29 Identities=14% Similarity=0.065 Sum_probs=25.3
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.+-+|.-+.|+|.+|+||||+++.||..+
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45578889999999999999999988765
No 312
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.29 E-value=0.025 Score=49.35 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=21.3
Q ss_pred eEEEEecCCCchhHHHHHHHHhc
Q 024881 188 SIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++.|||.+|+||||+.+.|+..+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999766
No 313
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.29 E-value=0.026 Score=48.73 Aligned_cols=26 Identities=15% Similarity=0.045 Sum_probs=22.7
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+|.-+++.|+||+||||.+..+|.++
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46678889999999999999888777
No 314
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.25 E-value=0.025 Score=43.59 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=22.0
Q ss_pred CCceEEEEecCCCchhHHHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
+-.+|.|+|++|+||||+.+.|+..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457999999999999999999863
No 315
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.22 E-value=0.035 Score=54.30 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=22.3
Q ss_pred eEEEEecCCCchhHHHHHHHHhc
Q 024881 188 SIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+++|+|++|+|||++++.||+.+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999998
No 316
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.21 E-value=0.027 Score=52.19 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=22.7
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+|.-+.|+|++||||||+.|.||-.+
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45668999999999999999999754
No 317
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.18 E-value=0.051 Score=52.32 Aligned_cols=50 Identities=18% Similarity=0.182 Sum_probs=37.7
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCC------CccCcHHHHHHHhCCCHHHHH
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGY------TPLSTKELLETFAKQTIDSWM 233 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY------~fvDTDeLIEq~agkSI~eIF 233 (261)
-+|.-+.|+|.+|+||||+.+.||..+-- .....++.+..+.|+.+..+|
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~ 78 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYF 78 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHH
Confidence 36888999999999999999999986521 122456666777888776665
No 318
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.13 E-value=0.038 Score=44.18 Aligned_cols=34 Identities=12% Similarity=-0.053 Sum_probs=25.8
Q ss_pred HHHHHHHhhcCCceEEEEecCCCchhHHHHHHHH
Q 024881 175 SLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 175 ~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
.+...+.-..+..+|.|+|++|+||||+.+.|..
T Consensus 14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3444443335666899999999999999998864
No 319
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.13 E-value=0.026 Score=54.98 Aligned_cols=38 Identities=18% Similarity=0.139 Sum_probs=29.9
Q ss_pred hhHHHHHHHhhc------------CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 173 WESLTAGSMQLL------------KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 173 We~l~~g~~~lL------------kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+..|...+.++| +|.-|.|||.+|+||||+.+.||..+
T Consensus 268 ~~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 268 YGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp HHHHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 555655555555 36678999999999999999999876
No 320
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.10 E-value=0.027 Score=51.92 Aligned_cols=27 Identities=19% Similarity=0.053 Sum_probs=23.1
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
-+|.-+.|+|.+||||||+.|.||-.+
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 356678999999999999999999654
No 321
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.09 E-value=0.028 Score=53.17 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=25.8
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+.-+|..+.|+|.+||||||+.|.||..+
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34489999999999999999999999875
No 322
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.07 E-value=0.03 Score=41.53 Aligned_cols=25 Identities=12% Similarity=0.209 Sum_probs=21.6
Q ss_pred CCceEEEEecCCCchhHHHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
+-.+|.++|..|+||||+...|...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3458999999999999999998854
No 323
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.06 E-value=0.028 Score=51.83 Aligned_cols=26 Identities=27% Similarity=0.152 Sum_probs=22.9
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+|.-+.|+|.+||||||+.|.||-.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 56678999999999999999999654
No 324
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.06 E-value=0.023 Score=52.16 Aligned_cols=27 Identities=11% Similarity=-0.031 Sum_probs=23.4
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
-+|.-+.|+|.+||||||+.|.||-.+
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 356679999999999999999999654
No 325
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.05 E-value=0.028 Score=46.91 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=22.6
Q ss_pred eEEEEecCCCchhHHHHHHHHhc---CCC
Q 024881 188 SIFLVGDSTEVNEKVALELAVGL---GYT 213 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~L---gY~ 213 (261)
-|.++|.+||||||+...|+..| ||+
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~ 34 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWR 34 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCe
Confidence 48899999999999999999876 554
No 326
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.04 E-value=0.028 Score=52.51 Aligned_cols=26 Identities=19% Similarity=0.084 Sum_probs=23.0
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+|.-+.|+|.+||||||+.|.||-.+
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 56678999999999999999999754
No 327
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.03 E-value=0.05 Score=53.21 Aligned_cols=28 Identities=21% Similarity=0.168 Sum_probs=24.9
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|..+.|+|.+|+||||+.+.||-.+
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 3478889999999999999999999765
No 328
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.03 E-value=0.027 Score=56.18 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=25.0
Q ss_pred ceEEEEecCCCchhHHHHHHHHhc---CCCc
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGL---GYTP 214 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~L---gY~f 214 (261)
.+++|+|.+|+|||++++.||+.+ +.+|
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~ 619 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 619 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcE
Confidence 479999999999999999999998 5554
No 329
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.01 E-value=0.029 Score=51.77 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=22.9
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+|.-+.|+|.+||||||+.|.||-.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 56679999999999999999999754
No 330
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.01 E-value=0.035 Score=44.09 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=21.4
Q ss_pred ceEEEEecCCCchhHHHHHHHHhc
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
..|.|+|++|+||||+.+.|+...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 469999999999999999998754
No 331
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.99 E-value=0.031 Score=46.44 Aligned_cols=29 Identities=21% Similarity=0.047 Sum_probs=24.6
Q ss_pred EEEEecCCCchhHHHHHHHHhc---CCCccCc
Q 024881 189 IFLVGDSTEVNEKVALELAVGL---GYTPLST 217 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~L---gY~fvDT 217 (261)
|.+-|.-||||||..+.|++.| |+..+-|
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 6677999999999999999988 7776633
No 332
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.98 E-value=0.03 Score=49.24 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=29.4
Q ss_pred HHHhhcCCc----eEEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881 179 GSMQLLKGT----SIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (261)
Q Consensus 179 g~~~lLkG~----sIyLVGmmGsGKSTVGr~LA~~LgY~fvD 216 (261)
-+...++|. .|.+.|++|+|||+.+..||+.++...++
T Consensus 47 ~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 47 ALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp HHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred HHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 344444443 59999999999999999999999765543
No 333
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.95 E-value=0.03 Score=51.68 Aligned_cols=26 Identities=19% Similarity=0.058 Sum_probs=22.9
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+|.-+.|+|.+||||||+.|.||-.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 56679999999999999999999654
No 334
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.93 E-value=0.031 Score=51.81 Aligned_cols=27 Identities=19% Similarity=0.022 Sum_probs=23.2
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
-+|.-+.|+|.+||||||+.|.||-.+
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 356679999999999999999999654
No 335
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.92 E-value=0.032 Score=42.94 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=20.6
Q ss_pred ceEEEEecCCCchhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
..|.|+|++|+||||+.+.|+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999853
No 336
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.92 E-value=0.031 Score=52.06 Aligned_cols=28 Identities=11% Similarity=0.003 Sum_probs=23.7
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|.-+.|+|.+||||||+.|.|+-.+
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3456678999999999999999998755
No 337
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.88 E-value=0.043 Score=49.97 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=33.7
Q ss_pred HHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 175 SLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 175 ~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
.++.++..+-+|..+-|+|.+|+||||+.+.||..+.
T Consensus 60 ~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 60 RAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4778888888999999999999999999999999874
No 338
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.87 E-value=0.029 Score=43.46 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=22.8
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHh
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
++..+|.++|..|+||||+...|+..
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcC
Confidence 45568999999999999999999865
No 339
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.87 E-value=0.035 Score=41.25 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=20.6
Q ss_pred ceEEEEecCCCchhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
.+|.++|+.|+||||+...|+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999865
No 340
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.86 E-value=0.034 Score=41.48 Aligned_cols=24 Identities=8% Similarity=0.263 Sum_probs=21.1
Q ss_pred CceEEEEecCCCchhHHHHHHHHh
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
-.+|.++|+.|+||||+.+.|...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999764
No 341
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.85 E-value=0.035 Score=51.76 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=24.1
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
++-+|.-+.|+|++||||||+.|.||..+
T Consensus 43 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 43 SISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34457779999999999999999999643
No 342
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.81 E-value=0.036 Score=43.92 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.9
Q ss_pred ceEEEEecCCCchhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
..|.|+|++|+||||+.+.|+..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
No 343
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.80 E-value=0.03 Score=53.43 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=24.5
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+.-+|..+.|||.+||||||+.+.|+..+
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 365 SIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34457789999999999999999998764
No 344
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.80 E-value=0.032 Score=53.42 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=24.8
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|..+.|||.+||||||+.+.||-.+
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468889999999999999999999765
No 345
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.76 E-value=0.038 Score=41.25 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=20.7
Q ss_pred ceEEEEecCCCchhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
.+|.++|..|+||||+...|...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999864
No 346
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.76 E-value=0.03 Score=53.46 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=23.3
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
-+|..+.|||.+||||||+.+.|+..+
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 346679999999999999999998764
No 347
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=93.74 E-value=0.016 Score=53.21 Aligned_cols=52 Identities=10% Similarity=-0.004 Sum_probs=34.3
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCC-ccCcHHHHHHH---hC-CCHHHHHHh
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYT-PLSTKELLETF---AK-QTIDSWMLA 235 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~-fvDTDeLIEq~---ag-kSI~eIFae 235 (261)
.+|+-|++-|.-|+||||+++.||+.|+.. ++-+.|=...- .| ..|.++..+
T Consensus 2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~~~gv~~trEPg~~w~~~~g~~~Lr~~yld 58 (331)
T 1e2k_A 2 PTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTT 58 (331)
T ss_dssp CEEEEEEECSCTTSSHHHHHHHHTC----CCEEEECCCHHHHHTTSSSCHHHHHHHH
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHHhhhCCEEEEeCCCCcccccccHHHHHHHHhC
Confidence 467889999999999999999999998643 44444433322 23 667777653
No 348
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.71 E-value=0.023 Score=52.08 Aligned_cols=27 Identities=15% Similarity=-0.032 Sum_probs=23.3
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
-+|.-+.|+|.+||||||+.|.||-.+
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 356678999999999999999999654
No 349
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.70 E-value=0.049 Score=51.16 Aligned_cols=48 Identities=13% Similarity=0.006 Sum_probs=38.1
Q ss_pred CCCcccccchh---HHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 164 LKWPDIVESWE---SLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 164 m~Wp~~~e~We---~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
++=.++-+... .++.++..+-+|..+.|+|.+|+||||+.+.||..+.
T Consensus 132 l~~~~v~~~~~tg~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 132 LQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp TTSCCCCSBCCCSCHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred eEEeccceecCCCceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 33334444443 4788888888999999999999999999999999873
No 350
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.64 E-value=0.04 Score=48.57 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=23.6
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+|..|.++|.+|+||||+++.||..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999999776
No 351
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.62 E-value=0.035 Score=41.33 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=20.4
Q ss_pred ceEEEEecCCCchhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
.+|.++|+.|+||||+...|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999888754
No 352
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.57 E-value=0.018 Score=52.00 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=40.7
Q ss_pred cCeEEEEEEecCCCCCCc--ccccchhHHHH-------------H-----HHhhcCCceEEEEecCCCchhHHHHHHHHh
Q 024881 150 EDQLVINLKKQDPELKWP--DIVESWESLTA-------------G-----SMQLLKGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 150 D~~lvv~L~K~d~~m~Wp--~~~e~We~l~~-------------g-----~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
++..+|-|.|.|--=++. ..++.|..... | +.++++|..+.|+|.+|+||||+.+.|+..
T Consensus 117 ~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 117 DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHhhcCCCEEEEECCCCCCHHHHHHHhccc
Confidence 378889999998521111 11344443321 1 256788999999999999999999998743
No 353
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.55 E-value=0.03 Score=53.58 Aligned_cols=26 Identities=27% Similarity=0.135 Sum_probs=22.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+|..+.|||.+||||||+.+.|+..+
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 45679999999999999999998764
No 354
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.55 E-value=0.043 Score=41.61 Aligned_cols=24 Identities=4% Similarity=0.088 Sum_probs=21.3
Q ss_pred CCceEEEEecCCCchhHHHHHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
+..+|.++|..|+||||+...|..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999875
No 355
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.47 E-value=0.044 Score=40.91 Aligned_cols=23 Identities=9% Similarity=0.131 Sum_probs=20.6
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
..+|.++|..|+||||+...|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999875
No 356
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.46 E-value=0.051 Score=44.75 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=27.6
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc--CCCc--cCcH
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL--GYTP--LSTK 218 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L--gY~f--vDTD 218 (261)
.+..-+.++|..|+||||+...||..| |++. +|.|
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 345668999999999999999999876 6553 5544
No 357
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.44 E-value=0.044 Score=49.28 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=26.0
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc---CCC--ccCcH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTK 218 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTD 218 (261)
|.-|.++|.+|+||||+...||..| |++ ++|.|
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4568999999999999999999876 554 44554
No 358
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.39 E-value=0.059 Score=43.10 Aligned_cols=26 Identities=8% Similarity=0.083 Sum_probs=23.0
Q ss_pred CceEEEEecCCCchhHHHHHHHHhcC
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
-..|.++|..|+||||+...|+..++
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45799999999999999999998863
No 359
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.37 E-value=0.038 Score=52.93 Aligned_cols=28 Identities=11% Similarity=0.082 Sum_probs=25.1
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
-+|.++.++|.+||||||+.+.|+..+.
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3688999999999999999999988774
No 360
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.33 E-value=0.054 Score=42.03 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=21.4
Q ss_pred CceEEEEecCCCchhHHHHHHHHh
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
..+|.++|+.|+||||+...|+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999865
No 361
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=93.33 E-value=0.72 Score=37.54 Aligned_cols=88 Identities=7% Similarity=0.110 Sum_probs=68.6
Q ss_pred CCCCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCC---ceeeEEecCe
Q 024881 76 ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPT---ETIWYIDEDQ 152 (261)
Q Consensus 76 ~~t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~---Et~W~IdD~~ 152 (261)
.-|+.|+=||+-.-|-|.|-+|.. ..++.++.+.++++-+....+-. -++. .|..+|--+ ...|-+++..
T Consensus 15 ~iTP~F~itQDdefv~I~I~~p~i-r~~a~~~ei~vd~~~F~F~~~PY-yLRL-----~lP~~vved~~~~A~YD~d~g~ 87 (115)
T 3eud_A 15 MITPRFSITQDEEFIFLKIFISNI-RFSAVGLEIIIQENMIIFHLSPY-YLRL-----RFPHELIDDERSTAQYDSKDEC 87 (115)
T ss_dssp CBCCCEEEEECSSEEEEEEECCSC-CCCSSSCEEEEETTEEEEEETTE-EEEE-----ECSSCEECSTTCEEEEETTTTE
T ss_pred EeCCcEEEEECCCEEEEEEEcCce-ecccCccEEEEeCCEEEEecCCe-EEEE-----ecCcceecCCCcceEEeCCCcE
Confidence 457789999999999999999983 33588999999999999988766 2332 244444333 3488888999
Q ss_pred EEEEEEecCCCCCCcccc
Q 024881 153 LVINLKKQDPELKWPDIV 170 (261)
Q Consensus 153 lvv~L~K~d~~m~Wp~~~ 170 (261)
+.|.|.|.++--..||+.
T Consensus 88 ~~v~lpK~~~GE~F~dLD 105 (115)
T 3eud_A 88 INVKVAKLNKNEYFEDLD 105 (115)
T ss_dssp EEEEEEESSTTCCCCCTT
T ss_pred EEEEEcCCcCCCcCCCcc
Confidence 999999999977777764
No 362
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.31 E-value=0.05 Score=40.63 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=21.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
+-.+|.++|+.|+||||+.+.|...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3468999999999999999999765
No 363
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.31 E-value=0.046 Score=41.20 Aligned_cols=25 Identities=8% Similarity=0.230 Sum_probs=21.8
Q ss_pred cCCceEEEEecCCCchhHHHHHHHH
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
++-.+|.++|..|+||||+...|..
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHc
Confidence 4456899999999999999999874
No 364
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.28 E-value=0.055 Score=40.82 Aligned_cols=24 Identities=8% Similarity=0.213 Sum_probs=21.4
Q ss_pred CceEEEEecCCCchhHHHHHHHHh
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
-.+|.++|..|+||||+...|...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 458999999999999999999865
No 365
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.28 E-value=0.055 Score=40.40 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.8
Q ss_pred ceEEEEecCCCchhHHHHHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
.+|.++|..|+||||+...|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4799999999999999998874
No 366
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.26 E-value=0.059 Score=43.11 Aligned_cols=44 Identities=9% Similarity=-0.011 Sum_probs=21.2
Q ss_pred CCcccccchhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHH
Q 024881 165 KWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 165 ~Wp~~~e~We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
.||.=.++|-.-........+..+|.++|+.|+||||+...|..
T Consensus 9 ~~~~~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 9 HHSSGLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp ---------------------CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cccCCcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHh
Confidence 45444444444444444455677899999999999999988875
No 367
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.25 E-value=0.045 Score=48.31 Aligned_cols=21 Identities=10% Similarity=-0.010 Sum_probs=19.2
Q ss_pred EEEEecCCCchhHHHHHHHHh
Q 024881 189 IFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~ 209 (261)
+.|+|++||||||+.+.|+..
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEecCCCCHHHHHHHHHhh
Confidence 679999999999999999964
No 368
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.24 E-value=0.05 Score=49.76 Aligned_cols=27 Identities=7% Similarity=0.058 Sum_probs=23.5
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
-+|-.|.++|.+||||||+.+.|+..+
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 345589999999999999999998876
No 369
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.23 E-value=0.047 Score=45.10 Aligned_cols=23 Identities=13% Similarity=0.001 Sum_probs=20.5
Q ss_pred eEEEEecCCCchhHHHHHHHHhc
Q 024881 188 SIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
-+.++|.+|+||||+.+.|+..|
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHhc
Confidence 48899999999999999998864
No 370
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.22 E-value=0.041 Score=43.05 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=20.0
Q ss_pred ceEEEEecCCCchhHHHHHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
..|.|||++|+||||+.+.|+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999999986
No 371
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.19 E-value=0.035 Score=51.60 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=30.3
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhcCCC--ccCc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYT--PLST 217 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~--fvDT 217 (261)
.+.+|..+.|.|++|+|||+++..+|...|++ |+++
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 34567778999999999999999999887766 7777
No 372
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.18 E-value=0.039 Score=53.08 Aligned_cols=27 Identities=19% Similarity=0.122 Sum_probs=23.1
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
-+|..+.|||.+||||||+.+.|+..+
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 356679999999999999999998654
No 373
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.16 E-value=0.06 Score=40.37 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=21.1
Q ss_pred CCceEEEEecCCCchhHHHHHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
+..+|.++|..|+||||+...|..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999865
No 374
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=93.16 E-value=0.73 Score=42.19 Aligned_cols=83 Identities=22% Similarity=0.272 Sum_probs=65.3
Q ss_pred CCCCCceEEcccCc-eEEEEEecCCcccccccceEEEeeCCEEEEEEccC---------CcceeeeecccccCCCCCCce
Q 024881 75 PANTSQYEFSDGSA-EIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRS---------GSFITLIETNQLFDKIKPTET 144 (261)
Q Consensus 75 ~~~t~~Y~wTqtl~-EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~---------~~~~tlId~g~L~~kIk~~Et 144 (261)
....+-|+=.+..+ ++.|.+.||+ .+..||.|+++++.|+|.-++. +.+..-+ .|.+.|.++.-
T Consensus 98 ~p~vDi~E~~~dgk~~~~v~~dlPG---~~~edI~V~v~~~~L~I~ge~~~~~e~~r~~g~F~R~~---~LP~~Vd~e~i 171 (314)
T 2bol_A 98 DFLKDAYEVGKDGRLHFKVYFNVKN---FKAEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSI---PLPPSVDRNHI 171 (314)
T ss_dssp GGGGGCEEECTTSSEEEEEEEECTT---CCTTTEEEEEETTEEEEEECCBSSTTCCCBCCCEEEEE---ECCTTBCGGGC
T ss_pred CCccceEEcCCCCceEEEEEEECCC---CchHHeEEEEECCEEEEEEEEeccCCCCEEEEEEEEEE---ECCCCcccccc
Confidence 34556676544444 8999999998 6788999999999999988765 2443333 48889999988
Q ss_pred eeEEe-cCeEEEEEEecCCC
Q 024881 145 IWYID-EDQLVINLKKQDPE 163 (261)
Q Consensus 145 ~W~Id-D~~lvv~L~K~d~~ 163 (261)
.=.++ |..|.|.|.|..++
T Consensus 172 ~A~~~~nGVL~I~lPK~~~~ 191 (314)
T 2bol_A 172 QATITTDDVLVIEAPVNEPN 191 (314)
T ss_dssp EEEECSSSEEEEEEEBSSCC
T ss_pred EEEEeCCCEEEEEEeccCcc
Confidence 88899 99999999998763
No 375
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.09 E-value=0.056 Score=40.51 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=20.5
Q ss_pred ceEEEEecCCCchhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
.+|.++|+.|+||||+...|...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999998854
No 376
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.09 E-value=0.057 Score=40.70 Aligned_cols=24 Identities=8% Similarity=0.055 Sum_probs=21.1
Q ss_pred ceEEEEecCCCchhHHHHHHHHhc
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.+|.++|+.|+||||+...|...-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999999998643
No 377
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.04 E-value=0.052 Score=41.29 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=21.6
Q ss_pred CCceEEEEecCCCchhHHHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
+..+|.++|..|+||||+...|...
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcC
Confidence 4568999999999999999988753
No 378
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.96 E-value=0.067 Score=40.68 Aligned_cols=24 Identities=21% Similarity=0.327 Sum_probs=21.5
Q ss_pred CceEEEEecCCCchhHHHHHHHHh
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
..+|.++|..|+||||+...|...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999875
No 379
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.95 E-value=0.062 Score=40.39 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=19.1
Q ss_pred eEEEEecCCCchhHHHHHHHH
Q 024881 188 SIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~ 208 (261)
+|.++|+.|+||||+...|..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999999863
No 380
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.94 E-value=0.072 Score=39.82 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.0
Q ss_pred eEEEEecCCCchhHHHHHHHHh
Q 024881 188 SIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
+|.++|+.|+||||+...|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999754
No 381
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.92 E-value=0.097 Score=39.94 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.5
Q ss_pred CCceEEEEecCCCchhHHHHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELA 207 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA 207 (261)
+..+|.++|+.|+||||+...|.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 35689999999999999998886
No 382
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.92 E-value=0.063 Score=39.96 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=20.2
Q ss_pred ceEEEEecCCCchhHHHHHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
.+|.++|..|+||||+...|..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999885
No 383
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.92 E-value=0.065 Score=40.59 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=20.9
Q ss_pred CceEEEEecCCCchhHHHHHHHHh
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
-.+|.++|+.|+||||+...|...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 357999999999999999998753
No 384
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.90 E-value=0.11 Score=47.74 Aligned_cols=52 Identities=10% Similarity=0.114 Sum_probs=30.2
Q ss_pred EecCCCCCCcccccchhHHHHHHH-hhcCCc-eEEEEecCCCchhHHHHHHHHhc
Q 024881 158 KKQDPELKWPDIVESWESLTAGSM-QLLKGT-SIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 158 ~K~d~~m~Wp~~~e~We~l~~g~~-~lLkG~-sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.|+.+ |...++-+.=...+..+. .+-.+. +++|.|..|+|||++...++..|
T Consensus 16 ~~~~p-~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 16 PRGSH-MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ------CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccCC-CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45556 555554422222222222 222233 89999999999999999999877
No 385
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.89 E-value=0.059 Score=40.89 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=21.9
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHh
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
-++-.+|.++|..|+||||+...|...
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhC
Confidence 344568999999999999999998854
No 386
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.88 E-value=0.065 Score=40.14 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=18.9
Q ss_pred ceEEEEecCCCchhHHHHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELA 207 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA 207 (261)
.+|.|+|+.|+||||+.+.|.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 479999999999999998885
No 387
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.87 E-value=0.063 Score=40.63 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=20.4
Q ss_pred ceEEEEecCCCchhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
.+|.++|..|+||||+...|...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999998753
No 388
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.86 E-value=0.088 Score=49.31 Aligned_cols=28 Identities=11% Similarity=0.006 Sum_probs=24.9
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLG 211 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~Lg 211 (261)
-+|-.|.++|.+||||||+.+.|+..+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4677799999999999999999998875
No 389
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.86 E-value=0.063 Score=40.85 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=20.3
Q ss_pred ceEEEEecCCCchhHHHHHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
.+|.|+|..|+||||+...|..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999985
No 390
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=92.85 E-value=0.088 Score=43.88 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=40.9
Q ss_pred hhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCC---ccCcHHHHHHHh
Q 024881 173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYT---PLSTKELLETFA 225 (261)
Q Consensus 173 We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~---fvDTDeLIEq~a 225 (261)
.+.=.+.+..+++|.++.+++++|+|||.++...+...|.. .+.+.+|++|..
T Consensus 18 ~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~ 73 (337)
T 2z0m_A 18 TEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVA 73 (337)
T ss_dssp CHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHH
Confidence 34444566778889999999999999999988877776654 346788888765
No 391
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.82 E-value=0.066 Score=40.31 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=19.8
Q ss_pred ceEEEEecCCCchhHHHHHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
.+|.++|+.|+||||+.+.|..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4799999999999999998864
No 392
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.81 E-value=0.064 Score=48.15 Aligned_cols=35 Identities=14% Similarity=0.028 Sum_probs=27.1
Q ss_pred HHHHHH-hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 176 LTAGSM-QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 176 l~~g~~-~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+..++. +.-+|..+.|+|.+|+||||+.+.|+..+
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 444443 33467789999999999999999998654
No 393
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.79 E-value=0.066 Score=40.43 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=20.4
Q ss_pred ceEEEEecCCCchhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
.+|.++|..|+||||+...|...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999888754
No 394
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.76 E-value=0.068 Score=50.24 Aligned_cols=22 Identities=9% Similarity=0.048 Sum_probs=20.6
Q ss_pred eEEEEecCCCchhHHHHHHHHh
Q 024881 188 SIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
.+.|+|.+|+||||+.+.|+..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 8999999999999999999973
No 395
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=92.67 E-value=0.12 Score=40.77 Aligned_cols=52 Identities=17% Similarity=0.048 Sum_probs=36.9
Q ss_pred hHHHHHHHhhcCCceEEEEecCCCchhHHHHH-HHHhcC-----------CCccCcHHHHHHHh
Q 024881 174 ESLTAGSMQLLKGTSIFLVGDSTEVNEKVALE-LAVGLG-----------YTPLSTKELLETFA 225 (261)
Q Consensus 174 e~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~-LA~~Lg-----------Y~fvDTDeLIEq~a 225 (261)
+.=...+..+++|.++.+++.+|+|||.++-. +.+.+. .-.+.+.+|.+|..
T Consensus 26 ~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~ 89 (207)
T 2gxq_A 26 PIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVA 89 (207)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHH
Confidence 33445566788899999999999999988544 334441 12457888888765
No 396
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.67 E-value=0.06 Score=48.54 Aligned_cols=26 Identities=19% Similarity=0.132 Sum_probs=23.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+|.-+-|+|.+|+||||+++.||..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 66779999999999999999999876
No 397
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.66 E-value=0.075 Score=42.29 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=22.3
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
-.+|.|+|+.|+||||+...|+...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998765
No 398
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A
Probab=92.65 E-value=0.51 Score=39.65 Aligned_cols=78 Identities=14% Similarity=0.219 Sum_probs=58.1
Q ss_pred EEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCc-----ce--eeeecccccCCCCCCceeeEE-ecCeE
Q 024881 82 EFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGS-----FI--TLIETNQLFDKIKPTETIWYI-DEDQL 153 (261)
Q Consensus 82 ~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~-----~~--tlId~g~L~~kIk~~Et~W~I-dD~~l 153 (261)
...++..++.|.+.||+ .+..||.|+++++.|.|.-++... .. ..--.=.|.+.|.++.-.=.+ +|..|
T Consensus 67 dv~e~~d~~~v~~dlPG---~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~Vd~~~i~A~~s~dGvL 143 (175)
T 2klr_A 67 EMRLEKDRFSVNLDVKH---FSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVL 143 (175)
T ss_dssp --CCCCSEEEEEECCSS---CCGGGEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEECTTTCCTTTCEEEECTTSCE
T ss_pred EEEEcCCeEEEEEECCC---CChHHEEEEEECCEEEEEEEEcccccCCceEEEEEEEEEECCCCcChhHeEEEEcCCCEE
Confidence 56678899999999998 677899999999999998865421 00 001112478889998888889 79999
Q ss_pred EEEEEecCC
Q 024881 154 VINLKKQDP 162 (261)
Q Consensus 154 vv~L~K~d~ 162 (261)
.|.+.|...
T Consensus 144 ~I~lPK~~~ 152 (175)
T 2klr_A 144 TVNGPRKQV 152 (175)
T ss_dssp EEEEECC--
T ss_pred EEEEECCCC
Confidence 999999765
No 399
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=92.63 E-value=0.099 Score=47.02 Aligned_cols=53 Identities=15% Similarity=0.062 Sum_probs=44.2
Q ss_pred hhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCc---cCcHHHHHHHh
Q 024881 173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTP---LSTKELLETFA 225 (261)
Q Consensus 173 We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~f---vDTDeLIEq~a 225 (261)
++.=..++..++++.++.|++++|+|||.++-.++..+|.+. +-+.+|++|..
T Consensus 95 ~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~ 150 (472)
T 2fwr_A 95 RDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWK 150 (472)
T ss_dssp CHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHH
Confidence 677778888899999999999999999999999998886543 45677877755
No 400
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.62 E-value=0.071 Score=40.64 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=20.6
Q ss_pred ceEEEEecCCCchhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
.+|.++|..|+||||+...|...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999854
No 401
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.61 E-value=0.077 Score=40.61 Aligned_cols=24 Identities=8% Similarity=-0.079 Sum_probs=20.8
Q ss_pred ceEEEEecCCCchhHHHHHHHHhc
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.+|.|+|+.|+||||+.+.|....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 479999999999999998887543
No 402
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.60 E-value=0.075 Score=41.12 Aligned_cols=24 Identities=21% Similarity=0.045 Sum_probs=21.1
Q ss_pred CceEEEEecCCCchhHHHHHHHHh
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
-.+|.++|..|+||||+...|...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999988754
No 403
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.59 E-value=0.071 Score=42.14 Aligned_cols=26 Identities=12% Similarity=0.229 Sum_probs=22.1
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHh
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
.+..+|.|+|..|+||||+...|...
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 45568999999999999999999864
No 404
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.58 E-value=0.064 Score=51.36 Aligned_cols=27 Identities=26% Similarity=0.067 Sum_probs=24.3
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
-+|.-+.|+|.+|+||||+.+.|+..+
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468889999999999999999999754
No 405
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.56 E-value=0.079 Score=40.54 Aligned_cols=23 Identities=4% Similarity=0.118 Sum_probs=20.5
Q ss_pred ceEEEEecCCCchhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
.+|.++|+.|+||||+...|...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999998754
No 406
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.55 E-value=0.044 Score=41.86 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=21.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
+-.+|.++|+.|+||||+...|...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4457999999999999999999864
No 407
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=92.55 E-value=0.16 Score=40.09 Aligned_cols=53 Identities=15% Similarity=0.024 Sum_probs=37.5
Q ss_pred hhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHH-HhcCC--------CccCcHHHHHHHh
Q 024881 173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELA-VGLGY--------TPLSTKELLETFA 225 (261)
Q Consensus 173 We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA-~~LgY--------~fvDTDeLIEq~a 225 (261)
++.=.+.+..+++|.++.+++.+|+|||.+....+ ..+.. -.+.+.+|.+|..
T Consensus 27 ~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 88 (206)
T 1vec_A 27 SPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVS 88 (206)
T ss_dssp CHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHH
T ss_pred CHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHH
Confidence 34445566677889999999999999998766443 33321 2456788888765
No 408
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.55 E-value=0.061 Score=47.37 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=19.0
Q ss_pred hhcCCc--eEEEEecCCCchhHHHHHHHH
Q 024881 182 QLLKGT--SIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 182 ~lLkG~--sIyLVGmmGsGKSTVGr~LA~ 208 (261)
..++|. +|.|||.+|+||||+-+.|+.
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHHHHHHC
T ss_pred EEEcCCCEEEEEECCCCCCHHHHHHHHhC
Confidence 356666 489999999999999999874
No 409
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.54 E-value=0.082 Score=40.48 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=20.1
Q ss_pred eEEEEecCCCchhHHHHHHHHh
Q 024881 188 SIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 188 sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
+|.++|+.|+||||+...|...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6999999999999999998864
No 410
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.48 E-value=0.071 Score=43.93 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=20.4
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
-.+|.|||.+|+||||+...|..
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHcC
Confidence 35799999999999999998874
No 411
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.45 E-value=0.097 Score=40.48 Aligned_cols=24 Identities=8% Similarity=0.170 Sum_probs=21.4
Q ss_pred CCceEEEEecCCCchhHHHHHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
+..+|.++|..|+||||+...|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 446899999999999999999976
No 412
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.43 E-value=0.075 Score=40.73 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=20.5
Q ss_pred ceEEEEecCCCchhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
.+|.|+|..|+||||+...|...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 37999999999999999988765
No 413
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.40 E-value=0.11 Score=42.99 Aligned_cols=34 Identities=3% Similarity=-0.056 Sum_probs=25.9
Q ss_pred hhHHHHHHHhhcCCceEEEEecCCCchhHHHHHH
Q 024881 173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALEL 206 (261)
Q Consensus 173 We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~L 206 (261)
|+.--+.+..+++|.++.++|.+||||||....+
T Consensus 63 ~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 63 KKFESEILEAISQNSVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp GGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHH
Confidence 4444455566778999999999999999866544
No 414
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.38 E-value=0.08 Score=40.17 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.9
Q ss_pred CceEEEEecCCCchhHHHHHHHHh
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
-.+|.++|..|+||||+...|...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 357999999999999999998754
No 415
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.36 E-value=0.036 Score=53.00 Aligned_cols=27 Identities=19% Similarity=0.094 Sum_probs=22.6
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
-+|..+.|||.+||||||+.+.|+..+
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 346679999999999999999887654
No 416
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.33 E-value=0.081 Score=41.00 Aligned_cols=27 Identities=7% Similarity=0.176 Sum_probs=21.5
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHh
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
..+..+|.++|..|+||||+...|...
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcC
Confidence 345678999999999999999999753
No 417
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=92.29 E-value=0.32 Score=39.03 Aligned_cols=53 Identities=11% Similarity=0.103 Sum_probs=37.1
Q ss_pred hhHHHHHHHhhcCCceEEEEecCCCchhHH-HHHHHHhcCC--------CccCcHHHHHHHh
Q 024881 173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKV-ALELAVGLGY--------TPLSTKELLETFA 225 (261)
Q Consensus 173 We~l~~g~~~lLkG~sIyLVGmmGsGKSTV-Gr~LA~~LgY--------~fvDTDeLIEq~a 225 (261)
++.=.+.+..+++|.++.+++.+|+|||.+ .-.+.+.+.. -.+.+.+|.+|..
T Consensus 38 ~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 99 (224)
T 1qde_A 38 SAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQ 99 (224)
T ss_dssp CHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHH
Confidence 344445566788999999999999999988 3444444421 2456788887765
No 418
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.25 E-value=0.082 Score=47.24 Aligned_cols=28 Identities=7% Similarity=-0.103 Sum_probs=24.0
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
...+.|++++|.+|+||||..+.|+..+
T Consensus 32 ~~~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 32 DRTNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp TBCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4567799999999999999999888653
No 419
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.24 E-value=0.081 Score=39.90 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.6
Q ss_pred ceEEEEecCCCchhHHHHHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
.+|.++|+.|+||||+...|..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999988864
No 420
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=92.19 E-value=0.044 Score=48.75 Aligned_cols=27 Identities=19% Similarity=0.179 Sum_probs=24.3
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCC
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGY 212 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY 212 (261)
.| -+.|||.+|+||||+-+.|+-.+|.
T Consensus 60 ~G-~~~lvG~NGaGKStLl~aI~~l~~~ 86 (415)
T 4aby_A 60 GG-FCAFTGETGAGKSIIVDALGLLLGG 86 (415)
T ss_dssp SS-EEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred CC-cEEEECCCCCCHHHHHHHHHHHhCC
Confidence 56 6899999999999999999988874
No 421
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.17 E-value=0.087 Score=40.01 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=20.9
Q ss_pred CceEEEEecCCCchhHHHHHHHHh
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
-.+|.++|..|+||||+...|...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 357999999999999999888754
No 422
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.15 E-value=0.094 Score=40.73 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.9
Q ss_pred ceEEEEecCCCchhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
.+|.++|+.|+||||+.+.|+..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999864
No 423
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.14 E-value=0.088 Score=40.32 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=22.4
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHh
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
.+-.+|.++|+.|+||||+...|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34568999999999999999999864
No 424
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.14 E-value=0.047 Score=52.50 Aligned_cols=27 Identities=7% Similarity=0.128 Sum_probs=22.9
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
-+|..+.|||.+||||||+.+.|+..+
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 346679999999999999999987654
No 425
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.13 E-value=0.07 Score=52.33 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=33.9
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCC--Ccc----CcHHHHHHHhCCCHHHHH
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGY--TPL----STKELLETFAKQTIDSWM 233 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY--~fv----DTDeLIEq~agkSI~eIF 233 (261)
-+|.-+.|+|.+|+||||+.+.||..+-- .-+ +.++.+....|..+...|
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~ 156 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYF 156 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHH
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhh
Confidence 36889999999999999999999986621 112 223444445555555444
No 426
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.09 E-value=0.098 Score=39.98 Aligned_cols=22 Identities=9% Similarity=0.218 Sum_probs=19.9
Q ss_pred ceEEEEecCCCchhHHHHHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
.+|.|+|+.|+||||+...|..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4799999999999999998874
No 427
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.09 E-value=0.068 Score=51.48 Aligned_cols=28 Identities=18% Similarity=0.084 Sum_probs=24.6
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|.-+.|+|.+|+||||+.+.||..+
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478889999999999999999999754
No 428
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=92.08 E-value=0.13 Score=44.32 Aligned_cols=50 Identities=12% Similarity=0.076 Sum_probs=36.2
Q ss_pred HHHHHHhhcCCceEEEEecCCCchhHHHHHHH-HhcC--------CCccCcHHHHHHHh
Q 024881 176 LTAGSMQLLKGTSIFLVGDSTEVNEKVALELA-VGLG--------YTPLSTKELLETFA 225 (261)
Q Consensus 176 l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA-~~Lg--------Y~fvDTDeLIEq~a 225 (261)
=.+.+..+++|.++.+++.+|+|||.+....+ +.+. .-.+.+.+|.+|..
T Consensus 67 Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 125 (414)
T 3eiq_A 67 QQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQ 125 (414)
T ss_dssp HHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHH
T ss_pred HHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHH
Confidence 34566788999999999999999999854433 3332 22457788888765
No 429
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.05 E-value=0.091 Score=46.62 Aligned_cols=33 Identities=24% Similarity=0.212 Sum_probs=27.1
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc---CCC--ccCcH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTK 218 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTD 218 (261)
|..|.++|..|+||||+...||..+ |++ ++|.|
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 5568999999999999999999777 554 45666
No 430
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=92.05 E-value=0.13 Score=47.65 Aligned_cols=35 Identities=17% Similarity=0.033 Sum_probs=27.5
Q ss_pred hHHHHHHHhhcC-----CceEEEEecCCCchhHHHHHHHH
Q 024881 174 ESLTAGSMQLLK-----GTSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 174 e~l~~g~~~lLk-----G~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
+...+-+.+.|. +.-|.|+||.|.||||+++.++.
T Consensus 130 ~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 130 KKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp HHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 555666666664 34599999999999999999975
No 431
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.05 E-value=0.099 Score=46.58 Aligned_cols=27 Identities=7% Similarity=-0.038 Sum_probs=23.8
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
-+|..|.|+|.+|+||||+...||..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357789999999999999999998765
No 432
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.03 E-value=0.1 Score=40.50 Aligned_cols=24 Identities=8% Similarity=0.282 Sum_probs=21.3
Q ss_pred CCceEEEEecCCCchhHHHHHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
+..+|.++|..|+||||+...|..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 356799999999999999999984
No 433
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.99 E-value=0.083 Score=51.68 Aligned_cols=28 Identities=25% Similarity=0.096 Sum_probs=24.6
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+-+|.-+.|+|.+|+||||+.+.||..+
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468889999999999999999999754
No 434
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.98 E-value=0.074 Score=50.41 Aligned_cols=33 Identities=27% Similarity=0.243 Sum_probs=26.9
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc---CCCc--cCcH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL---GYTP--LSTK 218 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L---gY~f--vDTD 218 (261)
|..|.++|..|+||||+...||..| |++. +|+|
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 5679999999999999999999766 6554 5655
No 435
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.91 E-value=0.095 Score=40.93 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=21.1
Q ss_pred CceEEEEecCCCchhHHHHHHHHh
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
-.+|.++|+.|+||||+...|...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 357999999999999999998764
No 436
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.90 E-value=0.096 Score=40.74 Aligned_cols=25 Identities=12% Similarity=0.209 Sum_probs=21.4
Q ss_pred CCceEEEEecCCCchhHHHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
+-.+|.++|..|+||||+...|...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3458999999999999999888754
No 437
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.85 E-value=0.1 Score=40.56 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=20.6
Q ss_pred ceEEEEecCCCchhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
.+|.|+|..|+||||+...|...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999998763
No 438
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.84 E-value=0.17 Score=45.39 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=29.9
Q ss_pred HHHHHHHhhcCCc-----eEEEEecCCCchhHHHHHHHHhc
Q 024881 175 SLTAGSMQLLKGT-----SIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 175 ~l~~g~~~lLkG~-----sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.+..-+...|+|. .|.|.|++|+|||..++.||..+
T Consensus 88 ~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 4445577777776 49999999999999999999975
No 439
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.83 E-value=0.11 Score=40.80 Aligned_cols=25 Identities=4% Similarity=0.106 Sum_probs=22.1
Q ss_pred CCceEEEEecCCCchhHHHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
+..+|.++|+.|+||||+...|...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4568999999999999999999864
No 440
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=91.81 E-value=0.15 Score=46.26 Aligned_cols=34 Identities=9% Similarity=0.148 Sum_probs=28.5
Q ss_pred HHHHHHhhcCCceEEEEecCCCchhHHHHHHHHh
Q 024881 176 LTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 176 l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
|..-+.+.+++.+|++||.+|+||||+...|...
T Consensus 152 L~~~I~~~~~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 152 VMEAINRYREGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp HHHHHHHHHTTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHhhcccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4445556668999999999999999999999876
No 441
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.73 E-value=0.11 Score=46.42 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=25.8
Q ss_pred ceEEEEecCCCchhHHHHHHHHhc---CCC--ccCcH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTK 218 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTD 218 (261)
..|.|+|..|+||||+...||..| |++ .+|.|
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 469999999999999999999886 554 34444
No 442
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.72 E-value=0.087 Score=41.20 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=21.1
Q ss_pred CceEEEEecCCCchhHHHHHHHHh
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
..+|.++|+.|+||||+...|...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999753
No 443
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.71 E-value=0.084 Score=44.62 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=23.8
Q ss_pred EEEEecCCCchhHHHHHHHHhcCCC--ccCc
Q 024881 189 IFLVGDSTEVNEKVALELAVGLGYT--PLST 217 (261)
Q Consensus 189 IyLVGmmGsGKSTVGr~LA~~LgY~--fvDT 217 (261)
|+++|..|||||+.|..||.. |.+ |++|
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT 31 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIAT 31 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEec
Confidence 789999999999999999987 753 5555
No 444
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.71 E-value=0.1 Score=41.15 Aligned_cols=25 Identities=24% Similarity=0.326 Sum_probs=21.2
Q ss_pred CCceEEEEecCCCchhHHHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
+..+|.++|+.|+||||+...|...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3468999999999999999998754
No 445
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.71 E-value=0.13 Score=40.22 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=20.7
Q ss_pred ceEEEEecCCCchhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
.+|.|+|+.|+||||+...|...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 47999999999999999999864
No 446
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.69 E-value=0.088 Score=41.10 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=22.8
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHh
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
+.-+..+|.|+|+.|+||||+...|...
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3445568999999999999999999865
No 447
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.69 E-value=0.11 Score=48.91 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.4
Q ss_pred hcCCceEEEEecCCCchhHHHHHH
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALEL 206 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~L 206 (261)
+-+|..+.|+|.+||||||+++.+
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHH
Confidence 457888999999999999999994
No 448
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.69 E-value=0.083 Score=40.60 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=22.3
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHh
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
++-.+|.|+|+.|+||||+...|...
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcC
Confidence 44568999999999999999999764
No 449
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=91.66 E-value=0.14 Score=43.98 Aligned_cols=54 Identities=15% Similarity=-0.031 Sum_probs=42.4
Q ss_pred cchhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhc----CCC---ccCcHHHHHHHh
Q 024881 171 ESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL----GYT---PLSTKELLETFA 225 (261)
Q Consensus 171 e~We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L----gY~---fvDTDeLIEq~a 225 (261)
+-++.=..++..+++| ++.|.++||+|||.++-.++..+ +-+ .+.+.+|++|..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~ 69 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHA 69 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHH
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHH
Confidence 4477778888999999 99999999999999998887665 322 345667877765
No 450
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.65 E-value=0.11 Score=41.08 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=21.9
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHh
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
.+-.+|.|+|+.|+||||+...|...
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34457999999999999999887764
No 451
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.59 E-value=0.12 Score=40.34 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.1
Q ss_pred CceEEEEecCCCchhHHHHHHHHh
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
..+|.++|+.|+||||+.+.|...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999998754
No 452
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.59 E-value=0.1 Score=41.02 Aligned_cols=25 Identities=4% Similarity=0.142 Sum_probs=21.6
Q ss_pred CCceEEEEecCCCchhHHHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
+..+|.|+|+.|+||||+...|...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 4468999999999999999888754
No 453
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.57 E-value=0.11 Score=39.92 Aligned_cols=25 Identities=4% Similarity=0.129 Sum_probs=21.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
+..+|.++|..|+||||+...|...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998753
No 454
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.56 E-value=0.12 Score=40.58 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=21.2
Q ss_pred CceEEEEecCCCchhHHHHHHHHh
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
-.+|.++|+.|+||||+...|...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 458999999999999999999754
No 455
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=91.53 E-value=0.18 Score=45.80 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=27.9
Q ss_pred HHHHHHhhcCCceEEEEecCCCchhHHHHHHHHh
Q 024881 176 LTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 176 l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
|..-+.+.++|.+|++||.+|+||||+...|...
T Consensus 150 L~~~l~~~~~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 150 LADAIEYYRGGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp HHHHHHHHHTTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred HHhhhhhhcccceEEEecCCCCChhHHHHHHHhh
Confidence 3444555568899999999999999999999876
No 456
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.50 E-value=0.12 Score=40.46 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=20.8
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHh
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
-+..+|.++|+.|+||||+...|...
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 45668999999999999999888743
No 457
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=91.49 E-value=0.29 Score=39.22 Aligned_cols=52 Identities=15% Similarity=0.042 Sum_probs=38.2
Q ss_pred hHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhc------CCC---ccCcHHHHHHHh
Q 024881 174 ESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL------GYT---PLSTKELLETFA 225 (261)
Q Consensus 174 e~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L------gY~---fvDTDeLIEq~a 225 (261)
+.=.+.+..+++|.++.+++.+|+|||.++...+... +.+ .+.+.+|.+|..
T Consensus 39 ~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 99 (220)
T 1t6n_A 39 EVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQIS 99 (220)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHH
Confidence 3444556677889999999999999999887766554 111 347888888764
No 458
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.49 E-value=0.11 Score=39.99 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.6
Q ss_pred ceEEEEecCCCchhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
.+|.++|+.|+||||+...|...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999998853
No 459
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.46 E-value=0.11 Score=40.28 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=20.9
Q ss_pred CCceEEEEecCCCchhHHHHHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
+-.+|.|+|+.|+||||+...|..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 345899999999999999998874
No 460
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.45 E-value=0.12 Score=40.68 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=20.4
Q ss_pred ceEEEEecCCCchhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
.+|.|+|..|+||||+...|...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998753
No 461
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.39 E-value=0.13 Score=40.31 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=20.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
+..+|.++|..|+||||+...|..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 356899999999999999998874
No 462
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.35 E-value=0.13 Score=42.69 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=21.2
Q ss_pred hcCCceEEEEecCCCchhHHHHHHHH
Q 024881 183 LLKGTSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 183 lLkG~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
..+-.+|.|+|..|+||||+...|..
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhC
Confidence 34456899999999999999998864
No 463
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.32 E-value=0.12 Score=40.15 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.4
Q ss_pred ceEEEEecCCCchhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
.+|.|+|..|+||||+...|...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999998754
No 464
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.29 E-value=0.12 Score=40.91 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=20.9
Q ss_pred CCceEEEEecCCCchhHHHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
+-.+|.++|+.|+||||+...|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999864
No 465
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.23 E-value=0.13 Score=48.33 Aligned_cols=29 Identities=10% Similarity=0.143 Sum_probs=24.6
Q ss_pred hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.+-+|..+.|+|.+|+||||+++.+|..+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45577789999999999999999998654
No 466
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=91.21 E-value=0.094 Score=48.03 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=28.9
Q ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHH
Q 024881 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (261)
Q Consensus 184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDe 219 (261)
..|+-|.|.|.+|+||||++.+|.+ -|++++.-|.
T Consensus 145 ~~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~ 179 (312)
T 1knx_A 145 VFGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDA 179 (312)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEE
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCE
Confidence 3566799999999999999999876 5888876553
No 467
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.14 E-value=0.14 Score=40.45 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=20.9
Q ss_pred CCceEEEEecCCCchhHHHHHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
+..+|.++|+.|+||||+...|..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999998853
No 468
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.14 E-value=0.11 Score=41.17 Aligned_cols=25 Identities=16% Similarity=0.053 Sum_probs=21.7
Q ss_pred CCceEEEEecCCCchhHHHHHHHHh
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
+-.+|.++|+.|+||||+...|...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4468999999999999999998854
No 469
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.13 E-value=0.16 Score=49.09 Aligned_cols=38 Identities=16% Similarity=-0.008 Sum_probs=29.8
Q ss_pred HHHHhhcCCceEEEEecCCCchhHHHHHHHHhc---CCCcc
Q 024881 178 AGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL---GYTPL 215 (261)
Q Consensus 178 ~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L---gY~fv 215 (261)
..+...+++..+++.|.+|+||||+.+.|+..+ |++.+
T Consensus 196 ~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl 236 (574)
T 3e1s_A 196 SVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVG 236 (574)
T ss_dssp HHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 345566778889999999999999999988754 55443
No 470
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=91.12 E-value=0.32 Score=41.62 Aligned_cols=53 Identities=15% Similarity=0.021 Sum_probs=38.6
Q ss_pred hhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhc------CCC---ccCcHHHHHHHh
Q 024881 173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL------GYT---PLSTKELLETFA 225 (261)
Q Consensus 173 We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L------gY~---fvDTDeLIEq~a 225 (261)
++.=...+..+++|.++.+++++|+|||.++-..+... +.+ .+.+.+|.+|..
T Consensus 32 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~ 93 (391)
T 1xti_A 32 SEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQIS 93 (391)
T ss_dssp CHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHH
Confidence 44445667778889999999999999999876555443 212 347788888764
No 471
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=91.10 E-value=0.096 Score=46.41 Aligned_cols=28 Identities=18% Similarity=0.402 Sum_probs=22.6
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCC
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGLGYT 213 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~ 213 (261)
.|.+ .|+|++|+||||+...+.-.|.++
T Consensus 23 ~~~~-~i~G~NGsGKS~lleAi~~~l~~~ 50 (339)
T 3qkt_A 23 EGIN-LIIGQNGSGKSSLLDAILVGLYWP 50 (339)
T ss_dssp SEEE-EEECCTTSSHHHHHHHHHHHHHCS
T ss_pred CCeE-EEECCCCCCHHHHHHHHHHHhcCC
Confidence 3555 599999999999999987777553
No 472
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=91.07 E-value=0.23 Score=41.57 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=20.1
Q ss_pred ceEEEEecCCCchhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
..|.+||.+|+||||+...|...
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CeEEEEeCCCCCHHHHHHHHHCC
Confidence 46999999999999999988743
No 473
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.98 E-value=0.12 Score=49.16 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=23.3
Q ss_pred hhcCCce--EEEEecCCCchhHHHHHHHHh
Q 024881 182 QLLKGTS--IFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 182 ~lLkG~s--IyLVGmmGsGKSTVGr~LA~~ 209 (261)
.+-+|.. +.|||.+|+||||+.+.|+..
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred EecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 4457777 999999999999999999865
No 474
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.97 E-value=0.13 Score=40.13 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=20.4
Q ss_pred ceEEEEecCCCchhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
.+|.++|+.|+||||+...|...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999988753
No 475
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.91 E-value=0.093 Score=49.23 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=23.9
Q ss_pred hhcCCce--EEEEecCCCchhHHHHHHHHhc
Q 024881 182 QLLKGTS--IFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 182 ~lLkG~s--IyLVGmmGsGKSTVGr~LA~~L 210 (261)
..++|.+ |.|||.+|+||||+.+.|+...
T Consensus 25 ~vl~~vsf~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 25 SVKRGFEFTLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp TCC-CCCEEEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEecCCCEEEEEECCCCCcHHHHHHHHhCCC
Confidence 4678874 8999999999999999998654
No 476
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.90 E-value=0.14 Score=48.44 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=23.3
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+|..|.++|..|+||||+...||..|
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46679999999999999999999876
No 477
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.89 E-value=0.15 Score=39.59 Aligned_cols=23 Identities=17% Similarity=0.175 Sum_probs=21.0
Q ss_pred ceEEEEecCCCchhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
.+|.++|+.|+||||+...|...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999865
No 478
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.89 E-value=0.15 Score=41.28 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.7
Q ss_pred ceEEEEecCCCchhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
.+|.|+|+.|+||||+.+.|...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 47999999999999999998764
No 479
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.85 E-value=0.14 Score=40.06 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.3
Q ss_pred ceEEEEecCCCchhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
.+|.|+|..|+||||+...|...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999988753
No 480
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.81 E-value=0.13 Score=40.81 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=20.7
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
|. ..++|++|+||||+-..|.-.|
T Consensus 24 g~-~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GI-NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EE-EEEECCTTSSHHHHHHHHHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHHHHH
Confidence 44 4789999999999999998777
No 481
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.78 E-value=0.13 Score=50.54 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=22.7
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+|.-+.|+|.+|+||||+.+.||-.+
T Consensus 377 ~GEiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 377 DSEILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp TTCEEEEESCTTSSHHHHHHHHHTSS
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCC
Confidence 35668999999999999999999754
No 482
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=90.75 E-value=0.13 Score=40.02 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=21.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+..+|.++|..|+||||+...|...-
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999998887554
No 483
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.75 E-value=0.17 Score=40.27 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=21.0
Q ss_pred CceEEEEecCCCchhHHHHHHHHh
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
-.+|.++|..|+||||+...|...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 357999999999999999998763
No 484
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=90.63 E-value=0.28 Score=46.09 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=20.2
Q ss_pred ceEEEEecCCCchhHHHHHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
.-|.++||-|.||||+|+.++.
T Consensus 153 ~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4589999999999999999995
No 485
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=90.62 E-value=0.13 Score=39.74 Aligned_cols=23 Identities=9% Similarity=0.250 Sum_probs=20.0
Q ss_pred CCceEEEEecCCCchhHHHHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELA 207 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA 207 (261)
+..+|.++|+.|+||||+...|.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999988874
No 486
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=90.60 E-value=0.13 Score=43.42 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=20.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
+..+|.|||.+|+||||++..|..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCcHHHHHHHHhC
Confidence 456899999999999999988764
No 487
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.55 E-value=0.093 Score=40.18 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=10.2
Q ss_pred ceEEEEecCCCchhHHHHHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
.+|.|+|+.|+||||+...|..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999888864
No 488
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.52 E-value=0.15 Score=40.12 Aligned_cols=22 Identities=5% Similarity=0.134 Sum_probs=19.6
Q ss_pred ceEEEEecCCCchhHHHHHHHH
Q 024881 187 TSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
.+|.++|..|+||||+...|..
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999988863
No 489
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=90.51 E-value=0.15 Score=48.60 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=26.6
Q ss_pred CceEEEEecCCCchhHHHHHHHHhc---CCCc--cCcH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVGL---GYTP--LSTK 218 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~L---gY~f--vDTD 218 (261)
+.-|.++|..|+||||+...||..| |++. +|+|
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D 137 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD 137 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4569999999999999999999766 6654 4544
No 490
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.51 E-value=0.17 Score=44.16 Aligned_cols=26 Identities=8% Similarity=-0.015 Sum_probs=21.9
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
+|.=.++.|.||+||||.+..+|.+.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46556789999999999999888776
No 491
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=90.47 E-value=0.14 Score=46.44 Aligned_cols=53 Identities=13% Similarity=-0.084 Sum_probs=38.5
Q ss_pred hhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhc---CC----CccCcHHHHHHHh
Q 024881 173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL---GY----TPLSTKELLETFA 225 (261)
Q Consensus 173 We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L---gY----~fvDTDeLIEq~a 225 (261)
.+.=..++..+++|.++.|+|++|+|||.++-.+|..+ +. -.+.+.+|.+|..
T Consensus 115 ~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~ 174 (510)
T 2oca_A 115 HWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMA 174 (510)
T ss_dssp CHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHH
Confidence 44455667777788999999999999999997777652 21 2345667777665
No 492
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.46 E-value=0.18 Score=40.75 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=21.3
Q ss_pred CceEEEEecCCCchhHHHHHHHHh
Q 024881 186 GTSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
..+|.++|+.|+||||+.+.|+..
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999864
No 493
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.42 E-value=0.14 Score=47.99 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=21.9
Q ss_pred ceEEEEecCCCchhHHHHHHHHhc
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
..|.++|..|+||||++..||..+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 369999999999999999999876
No 494
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.42 E-value=0.19 Score=39.81 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=20.7
Q ss_pred ceEEEEecCCCchhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
.+|.++|..|+||||+...|...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999863
No 495
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.42 E-value=0.17 Score=40.25 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.4
Q ss_pred ceEEEEecCCCchhHHHHHHHHh
Q 024881 187 TSIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
.+|.|+|+.|+||||+...|...
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 47999999999999999988753
No 496
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=90.42 E-value=0.17 Score=47.50 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=25.9
Q ss_pred ceEEEEecCCCchhHHHHHHHHhc----CCCc--cCcH
Q 024881 187 TSIFLVGDSTEVNEKVALELAVGL----GYTP--LSTK 218 (261)
Q Consensus 187 ~sIyLVGmmGsGKSTVGr~LA~~L----gY~f--vDTD 218 (261)
..|.++|..|+||||++..||..| |++. +|+|
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 468899999999999999999776 6554 4555
No 497
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.38 E-value=0.18 Score=40.03 Aligned_cols=23 Identities=4% Similarity=0.046 Sum_probs=20.2
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 024881 186 GTSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 186 G~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
-.+|.++|+.|+||||+...|..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999998863
No 498
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=90.34 E-value=0.14 Score=46.42 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=20.9
Q ss_pred CCceEEEEecCCCchhHHHHHHHHhc
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~~L 210 (261)
.|.++ |+|++||||||+-..++-+|
T Consensus 23 ~g~~~-i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 23 SGITV-VEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp SEEEE-EECCTTSSHHHHHHHHHHHH
T ss_pred CCeEE-EECCCCCCHHHHHHHHHHHh
Confidence 46555 99999999999999988665
No 499
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.22 E-value=0.17 Score=39.15 Aligned_cols=24 Identities=4% Similarity=0.083 Sum_probs=20.4
Q ss_pred CCceEEEEecCCCchhHHHHHHHH
Q 024881 185 KGTSIFLVGDSTEVNEKVALELAV 208 (261)
Q Consensus 185 kG~sIyLVGmmGsGKSTVGr~LA~ 208 (261)
...+|.|+|+.|+||||+...|..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 445799999999999999888764
No 500
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=90.18 E-value=0.25 Score=42.83 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=38.9
Q ss_pred cCeEEEEEEecCCCCCCcccccchhHHH-----------------HHHHhhcCCc--eEEEEecCCCchhHHHHHHHHh
Q 024881 150 EDQLVINLKKQDPELKWPDIVESWESLT-----------------AGSMQLLKGT--SIFLVGDSTEVNEKVALELAVG 209 (261)
Q Consensus 150 D~~lvv~L~K~d~~m~Wp~~~e~We~l~-----------------~g~~~lLkG~--sIyLVGmmGsGKSTVGr~LA~~ 209 (261)
++..++-|-|.|- .. +...+.|.... ..+.+.++.. ++.+||.+|+||||+...|+..
T Consensus 46 ~k~~iivlNK~DL-~~-~~~~~~~~~~~~~~g~~v~iSa~~~~gi~~L~~~l~~~~~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 46 RKETIILLNKVDI-AD-EKTTKKWVEFFKKQGKRVITTHKGEPRKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp TSEEEEEEECGGG-SC-HHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHHCCCTTCEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCcEEEEECccC-CC-HHHHHHHHHHHHHcCCeEEEECCCCcCHHHHHHHHHHhhhheEEeCCCCCCHHHHHHHHhcc
Confidence 6677777777775 22 22334443222 2344566664 9999999999999999998753
Done!