Query 024882
Match_columns 261
No_of_seqs 118 out of 142
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 08:09:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024882.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024882hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03180 reversibly glycosylat 100.0 3.7E-86 8.1E-91 612.7 18.2 253 5-257 2-254 (346)
2 PF03214 RGP: Reversibly glyco 100.0 3.6E-79 7.8E-84 565.1 14.8 247 10-257 4-255 (348)
3 PF00535 Glycos_transf_2: Glyc 98.3 1.9E-07 4.2E-12 74.2 0.3 94 17-123 1-105 (169)
4 cd06427 CESA_like_2 CESA_like_ 98.1 1.5E-06 3.3E-11 76.3 3.4 95 15-122 2-110 (241)
5 cd06421 CESA_CelA_like CESA_Ce 98.1 4.7E-07 1E-11 77.6 0.0 99 15-121 2-109 (234)
6 cd06433 GT_2_WfgS_like WfgS an 98.1 1.3E-06 2.9E-11 72.1 2.1 89 17-115 1-94 (202)
7 PRK10073 putative glycosyl tra 98.0 1.6E-06 3.4E-11 81.3 0.6 97 15-120 7-109 (328)
8 cd04195 GT2_AmsE_like GT2_AmsE 98.0 1.5E-06 3.2E-11 73.1 -0.1 94 17-122 1-106 (201)
9 cd02522 GT_2_like_a GT_2_like_ 98.0 7.3E-06 1.6E-10 69.7 4.1 86 16-115 1-91 (221)
10 cd02510 pp-GalNAc-T pp-GalNAc- 98.0 3.9E-06 8.4E-11 76.4 2.4 99 17-124 1-111 (299)
11 PRK10018 putative glycosyl tra 98.0 6E-06 1.3E-10 76.0 3.7 94 15-119 6-108 (279)
12 cd06437 CESA_CaSu_A2 Cellulose 98.0 6.6E-06 1.4E-10 71.4 3.6 91 15-115 2-106 (232)
13 cd04196 GT_2_like_d Subfamily 97.9 1.9E-06 4.1E-11 72.5 0.1 91 17-120 1-103 (214)
14 cd06913 beta3GnTL1_like Beta 1 97.9 2.5E-06 5.4E-11 73.4 0.8 92 18-118 1-106 (219)
15 cd06434 GT2_HAS Hyaluronan syn 97.9 2.4E-06 5.2E-11 73.6 0.7 97 15-122 1-103 (235)
16 COG0463 WcaA Glycosyltransfera 97.9 2.1E-05 4.6E-10 61.2 5.4 87 13-113 2-99 (291)
17 cd06420 GT2_Chondriotin_Pol_N 97.9 2.5E-06 5.5E-11 70.4 0.1 83 18-113 1-96 (182)
18 cd06423 CESA_like CESA_like is 97.9 5.8E-06 1.3E-10 65.3 2.2 85 18-115 1-97 (180)
19 cd06439 CESA_like_1 CESA_like_ 97.9 3E-06 6.5E-11 74.0 0.4 100 12-120 27-133 (251)
20 cd04192 GT_2_like_e Subfamily 97.9 5.7E-06 1.2E-10 70.3 1.9 92 18-119 1-105 (229)
21 cd04184 GT2_RfbC_Mx_like Myxoc 97.9 3.2E-06 6.9E-11 71.0 0.2 97 15-121 2-108 (202)
22 cd06442 DPM1_like DPM1_like re 97.9 1.9E-06 4.1E-11 73.5 -1.4 94 18-118 1-100 (224)
23 cd02525 Succinoglycan_BP_ExoA 97.8 9.5E-06 2.1E-10 69.8 2.7 92 16-120 2-105 (249)
24 cd02520 Glucosylceramide_synth 97.8 1.2E-05 2.6E-10 68.4 2.7 91 15-114 2-104 (196)
25 cd04186 GT_2_like_c Subfamily 97.8 6E-06 1.3E-10 66.2 0.1 83 18-113 1-91 (166)
26 TIGR03469 HonB hopene-associat 97.7 3E-05 6.6E-10 73.8 4.2 102 12-122 38-159 (384)
27 PF13641 Glyco_tranf_2_3: Glyc 97.7 5.3E-06 1.2E-10 71.2 -0.9 96 16-120 3-110 (228)
28 PLN02726 dolichyl-phosphate be 97.7 1.9E-05 4.2E-10 69.6 2.2 100 13-121 8-118 (243)
29 cd06435 CESA_NdvC_like NdvC_li 97.7 2.8E-05 6.1E-10 67.2 3.1 96 17-121 1-109 (236)
30 PRK14583 hmsR N-glycosyltransf 97.6 3E-05 6.4E-10 75.2 3.1 88 15-115 76-174 (444)
31 cd06438 EpsO_like EpsO protein 97.6 5.3E-06 1.1E-10 69.7 -2.2 88 18-115 1-100 (183)
32 TIGR03472 HpnI hopanoid biosyn 97.6 2.4E-05 5.3E-10 74.1 2.1 97 14-120 41-150 (373)
33 PRK11204 N-glycosyltransferase 97.6 1.4E-05 3.1E-10 76.0 0.4 95 15-122 55-160 (420)
34 cd04179 DPM_DPG-synthase_like 97.6 1.6E-05 3.5E-10 65.6 0.2 89 18-115 1-98 (185)
35 cd04185 GT_2_like_b Subfamily 97.5 4.9E-05 1.1E-09 64.1 1.9 90 18-120 1-103 (202)
36 PRK10063 putative glycosyl tra 97.5 0.00012 2.7E-09 65.8 4.1 89 15-112 2-98 (248)
37 TIGR03111 glyc2_xrt_Gpos1 puta 97.4 6.2E-05 1.4E-09 73.1 2.2 100 14-122 49-157 (439)
38 cd04188 DPG_synthase DPG_synth 97.4 5.5E-05 1.2E-09 64.7 1.2 85 18-115 1-101 (211)
39 cd04187 DPM1_like_bac Bacteria 97.3 2.2E-05 4.8E-10 65.3 -2.0 89 18-119 1-103 (181)
40 cd02511 Beta4Glucosyltransfera 97.3 0.00013 2.7E-09 64.0 2.5 84 15-113 1-88 (229)
41 PRK10714 undecaprenyl phosphat 97.2 7.8E-05 1.7E-09 69.8 -0.1 100 12-121 4-115 (325)
42 PTZ00260 dolichyl-phosphate be 97.2 7.4E-05 1.6E-09 70.3 -0.5 88 13-113 69-179 (333)
43 COG1215 Glycosyltransferases, 97.2 0.00062 1.3E-08 64.3 5.5 90 14-113 54-154 (439)
44 PRK13915 putative glucosyl-3-p 97.2 0.00013 2.9E-09 67.9 1.0 94 13-113 30-133 (306)
45 cd02526 GT2_RfbF_like RfbF is 97.1 0.00011 2.3E-09 63.4 -0.3 89 18-116 1-95 (237)
46 PRK11498 bcsA cellulose syntha 96.8 0.00027 5.9E-09 74.5 -0.0 96 15-121 261-364 (852)
47 cd06436 GlcNAc-1-P_transferase 96.8 0.00044 9.6E-09 58.8 1.2 84 18-113 1-106 (191)
48 cd04190 Chitin_synth_C C-termi 96.8 0.00044 9.5E-09 61.4 1.2 76 18-121 1-98 (244)
49 PF10111 Glyco_tranf_2_2: Glyc 96.7 0.00033 7E-09 64.0 -0.3 84 17-113 1-105 (281)
50 TIGR03030 CelA cellulose synth 96.6 0.0012 2.6E-08 68.3 2.6 107 15-121 132-253 (713)
51 cd00761 Glyco_tranf_GTA_type G 95.8 0.012 2.6E-07 45.0 4.1 88 18-113 1-94 (156)
52 cd02514 GT13_GLCNAC-TI GT13_GL 95.3 0.022 4.7E-07 54.3 4.7 35 16-50 2-43 (334)
53 KOG2977 Glycosyltransferase [G 95.1 0.0084 1.8E-07 56.2 1.1 89 15-108 68-169 (323)
54 TIGR01556 rhamnosyltran L-rham 95.0 0.0036 7.8E-08 56.2 -1.6 40 83-122 57-99 (281)
55 COG1216 Predicted glycosyltran 94.8 0.0092 2E-07 54.9 0.5 98 13-123 2-111 (305)
56 cd04191 Glucan_BSP_ModH Glucan 92.8 0.056 1.2E-06 49.1 1.7 52 205-257 168-223 (254)
57 PRK14716 bacteriophage N4 adso 90.7 0.26 5.6E-06 49.5 3.9 88 13-113 65-175 (504)
58 KOG1476 Beta-1,3-glucuronyltra 89.0 0.44 9.6E-06 45.3 3.8 36 13-48 86-127 (330)
59 cd00218 GlcAT-I Beta1,3-glucur 88.0 1.1 2.3E-05 40.7 5.4 32 16-47 3-40 (223)
60 KOG2978 Dolichol-phosphate man 86.3 1.2 2.7E-05 40.0 4.7 89 14-112 3-104 (238)
61 PRK05454 glucosyltransferase M 80.2 1.6 3.6E-05 45.5 3.5 97 12-113 122-237 (691)
62 PLN02458 transferase, transfer 72.4 2.7 5.8E-05 40.4 2.3 32 16-47 114-153 (346)
63 PRK11234 nfrB bacteriophage N4 70.9 4.3 9.3E-05 42.7 3.7 90 14-112 63-171 (727)
64 PF04583 Baculo_p74: Baculovir 59.6 4.3 9.4E-05 37.4 1.0 20 139-158 122-141 (249)
65 PRK15489 nfrB bacteriophage N4 57.2 14 0.0003 38.9 4.4 35 14-48 71-111 (703)
66 PF13733 Glyco_transf_7N: N-te 56.0 5.1 0.00011 33.8 0.8 80 3-112 36-127 (136)
67 PRK14503 mannosyl-3-phosphogly 36.0 26 0.00057 34.3 2.3 95 14-112 51-176 (393)
68 KOG3737 Predicted polypeptide 35.1 26 0.00056 35.0 2.1 93 16-120 157-264 (603)
69 TIGR02460 osmo_MPGsynth mannos 34.1 29 0.00063 33.8 2.2 95 14-112 50-175 (381)
70 PF04666 Glyco_transf_54: N-Ac 26.8 24 0.00053 33.2 0.4 24 97-120 170-193 (297)
71 cd00899 b4GalT Beta-4-Galactos 23.8 95 0.0021 28.1 3.6 69 15-113 3-83 (219)
72 TIGR01658 EYA-cons_domain eyes 23.6 85 0.0018 29.4 3.2 25 27-51 217-243 (274)
73 PF13712 Glyco_tranf_2_5: Glyc 22.4 76 0.0016 28.1 2.7 75 16-121 1-80 (217)
74 PRK14502 bifunctional mannosyl 20.8 56 0.0012 34.5 1.7 95 14-112 55-180 (694)
75 PF13632 Glyco_trans_2_3: Glyc 20.1 28 0.0006 28.9 -0.6 15 99-113 1-15 (193)
No 1
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=100.00 E-value=3.7e-86 Score=612.71 Aligned_cols=253 Identities=91% Similarity=1.538 Sum_probs=248.2
Q ss_pred CCCCCCCCCCCeEEEEecccChhHHHhhhcccCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccccCc
Q 024882 5 STKPTPLLKDELDIVIPTIRNLDFLEMWRPFFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKD 84 (261)
Q Consensus 5 ~~~~~~~~~~~v~IVVtTi~~p~~L~~~~~~~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~lP~~s 84 (261)
+..++++++++++||||||++++||++|+++++++|+|+|+|++.+++++.|+|+++++|+++|++++++.+.++|||++
T Consensus 2 ~~~~~~~~~~evdIVi~TI~~~~fL~~~r~~l~~~h~iiV~d~D~~~~~~~~~G~d~~vy~r~d~~~~Lg~~~~~Ip~~~ 81 (346)
T PLN03180 2 SVSPAPLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKEIKVPEGFDYELYNRNDINRILGPKASCISFKD 81 (346)
T ss_pred CCccCCCCCCcceEEEeccCchhHHHHHHHhcCcccEEEEecCCcccceeccCCCceeecCHHHHHhhhcccccccccCc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeEEEEeceEEEeecCCCcccCCCCCccchhhhhhhhccccCCCCcccccccccCcCCCCCcCcccCCCCCCccc
Q 024882 85 SACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALEQHIKNLLSPSTPLFFNTLYDPYREGADFVRGYPFSLREGVHT 164 (261)
Q Consensus 85 ~arRN~GYL~A~a~~I~~~DDDn~P~~~~~g~~~d~~~~~~~~l~~~~~~~~~N~ly~~f~~~~~wpRG~P~~~r~g~~~ 164 (261)
+||||||||+|++|||++|||||.|+++|.|+.+|+++||+.||..|++|+|||+||+||+++++||||||||+|+|+++
T Consensus 82 ~a~R~fGyL~s~~~yivsiDDD~~Pa~d~~g~~i~~~~qH~~NL~~pstp~~fNtLYdp~r~g~~fvRGYPfS~R~gv~v 161 (346)
T PLN03180 82 SACRCFGYLVSKKKYIFTIDDDCFVAKDPSGKLINALEQHIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGVPT 161 (346)
T ss_pred ccchhhhheeecceEEEEECCCCCCCCCCccccccHHHHHHHhcCCCCCCceeecccccCccCCcccCCCCccccCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCCCCCcccccccCCCccCcccccceeeCCCCceeeecceechhhhcccchhhhhcccCCCCcccchhhhHHH
Q 024882 165 AVSHGLWLNIPDYDAPTQLVKPRERNTRYVDAVLTVPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAG 244 (261)
Q Consensus 165 ~i~qGL~~~~PDvDAi~rl~~~~~~~~~f~~~~v~l~~Gt~~p~nsqNtaf~r~a~~pa~~~~~~~~~~~~~R~~DIWrg 244 (261)
+++||||+|+|||||+|||+++.|++++|++++||+|+|||+|+|||||||+||++|||||+.+|++|+.++|++|||+|
T Consensus 162 aiS~GLWln~PD~DA~t~l~k~~e~~t~yvdavvtip~gt~~pv~~~NlAF~ReligPA~y~g~m~~g~~i~R~dDiWsG 241 (346)
T PLN03180 162 AVSHGLWLNIPDYDAPTQLVKPLERNTRYVDAVMTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAG 241 (346)
T ss_pred EEecccccCCCcccchhhhccchhccceecccEEeccCCCEeecccchhhhhhhhcchhheecccCCCCcccchhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhheee
Q 024882 245 WCMKVLFYCMVYI 257 (261)
Q Consensus 245 ~~~qri~~~~~~~ 257 (261)
||+|++||||.+-
T Consensus 242 ~c~K~i~dhLG~g 254 (346)
T PLN03180 242 WCAKVICDHLGLG 254 (346)
T ss_pred HHHHHHHHHhCcc
Confidence 9999999999864
No 2
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=100.00 E-value=3.6e-79 Score=565.08 Aligned_cols=247 Identities=70% Similarity=1.236 Sum_probs=238.5
Q ss_pred CCCCCCeEEEEeccc-Ch-hHHHhhhcccCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccccCcccc
Q 024882 10 PLLKDELDIVIPTIR-NL-DFLEMWRPFFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSAC 87 (261)
Q Consensus 10 ~~~~~~v~IVVtTi~-~p-~~L~~~~~~~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~lP~~s~ar 87 (261)
+|+++|++|||+|++ +. +||++||++++++|+|||.|++..++++.|+||+.++|+++++++++|.. .+|||++++|
T Consensus 4 ~~~~~~~divi~~~~~~l~~~~~~wr~~~~~~hliiv~d~~~~~~~~~p~g~~~~~y~~~di~~~lg~~-~~i~~~~~a~ 82 (348)
T PF03214_consen 4 EILDDEVDIVIPALRPNLTDFLEEWRPFFSPYHLIIVQDPDPNEEIKVPEGFDYEVYNRNDIERVLGAK-TLIPFKGDAC 82 (348)
T ss_pred ccccCcccEEeecccccHHHHHHHHHHhhcceeEEEEeCCCccccccCCcccceeeecHhhHHhhcCCc-ccccccccch
Confidence 789999999999999 88 99999999999999999999999999999999999999999999999988 8899999999
Q ss_pred cceeEEEEeceEEEeecCCCcccCCCCCccchhhhhhhhccccCCCCcccccccccCcCCCCCcCcccCCCCCCccceee
Q 024882 88 RCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALEQHIKNLLSPSTPLFFNTLYDPYREGADFVRGYPFSLREGVHTAVS 167 (261)
Q Consensus 88 RN~GYL~A~a~~I~~~DDDn~P~~~~~g~~~d~~~~~~~~l~~~~~~~~~N~ly~~f~~~~~wpRG~P~~~r~g~~~~i~ 167 (261)
||||||+|++|||+++||||+|++++.|.+++.+.||+.|+..|||+.|||+||+|++++++||||||||+|+|++++++
T Consensus 83 R~fGyL~s~~~yivsiDDD~~P~~D~~g~~~~~v~qh~~~~~~~st~~~fNtLyd~~~e~~~f~RGyPfS~Regv~~~~s 162 (348)
T PF03214_consen 83 RNFGYLVSKKDYIVSIDDDCLPAKDDFGTHIDAVAQHVENLSTPSTPFFFNTLYDPYREGADFPRGYPFSLREGVDTAAS 162 (348)
T ss_pred hhhHhhhcccceEEEEccccccccCCccceehhhhccceeeeccCchhhhhhhcccccccCcccCCCCcccccCCceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCCCCcccccccCCCccCcccccceeeCCCCceeeecceechhhhcccchhhhhcccCCCCcccchh---hhHHH
Q 024882 168 HGLWLNIPDYDAPTQLVKPRERNTRYVDAVLTVPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYD---DMWAG 244 (261)
Q Consensus 168 qGL~~~~PDvDAi~rl~~~~~~~~~f~~~~v~l~~Gt~~p~nsqNtaf~r~a~~pa~~~~~~~~~~~~~R~~---DIWrg 244 (261)
||||+|+|||||||||+++.+++++|+++++++|+|||+|+|||||||+||+++|+||+.+|+.++.++|++ |||+|
T Consensus 163 ~GLWln~PD~DA~t~l~~~~~r~~~~~d~~~~~p~gt~~pv~s~NlAf~Relip~~~~~~~~~~~~~~~R~d~~gDIWsG 242 (348)
T PF03214_consen 163 AGLWLNVPDLDAPTQLVKPTERNTRYVDAVLTIPRGTYLPVCSMNLAFDRELIPPAYYFPMMGNGWGIGRFDRFGDIWSG 242 (348)
T ss_pred cccccCCcccchhhhhccchhccccccCceEEecCCCEeecccchhhhhhhhcChheecccccCCCcccccccchhHHHH
Confidence 999999999999999999999999999999999999999999999999999997777777777777788888 99999
Q ss_pred HHHHHHhhhheee
Q 024882 245 WCMKVLFYCMVYI 257 (261)
Q Consensus 245 ~~~qri~~~~~~~ 257 (261)
||+|++||+|-+-
T Consensus 243 ~f~k~~~d~Lg~~ 255 (348)
T PF03214_consen 243 YFLKVICDHLGHG 255 (348)
T ss_pred HHHHHHHHHcCCc
Confidence 9999999999764
No 3
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=98.26 E-value=1.9e-07 Score=74.16 Aligned_cols=94 Identities=27% Similarity=0.349 Sum_probs=63.2
Q ss_pred EEEEecccCh----hHHHhhhcc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhC--CCccc--cc--cCcc
Q 024882 17 DIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG--PKASC--IS--FKDS 85 (261)
Q Consensus 17 ~IVVtTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~--~~~~~--lP--~~s~ 85 (261)
+|||||++++ +||+++++. ...+++|||.|. .+++ +.+-.+++.. ....+ .+ .+..
T Consensus 1 Svvip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~------s~d~-------~~~~~~~~~~~~~~i~~i~~~~n~g~~ 67 (169)
T PF00535_consen 1 SVVIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDG------STDE-------TEEILEEYAESDPNIRYIRNPENLGFS 67 (169)
T ss_dssp EEEEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-------SSS-------HHHHHHHHHCCSTTEEEEEHCCCSHHH
T ss_pred CEEEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccc------cccc-------ccccccccccccccccccccccccccc
Confidence 6999999997 688888876 889999999999 4331 1112222221 11111 11 3578
Q ss_pred cccceeEEEEeceEEEeecCCCcccCCCCCccchhhhh
Q 024882 86 ACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALEQ 123 (261)
Q Consensus 86 arRN~GYL~A~a~~I~~~DDDn~P~~~~~g~~~d~~~~ 123 (261)
+.+|.|.-.|.++||+++|||+.+.++++.+.++.+.+
T Consensus 68 ~~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~ 105 (169)
T PF00535_consen 68 AARNRGIKHAKGEYILFLDDDDIISPDWLEELVEALEK 105 (169)
T ss_dssp HHHHHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHH
T ss_pred ccccccccccceeEEEEeCCCceEcHHHHHHHHHHHHh
Confidence 89999999999999999999999999876666666555
No 4
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=98.15 E-value=1.5e-06 Score=76.27 Aligned_cols=95 Identities=11% Similarity=0.216 Sum_probs=63.5
Q ss_pred CeEEEEecccCh----hHHHhhhcc-cC--CeEEEEEecCCCCcccccCCCccccccChhhhhhhhC---CCccccc---
Q 024882 15 ELDIVIPTIRNL----DFLEMWRPF-FE--PYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG---PKASCIS--- 81 (261)
Q Consensus 15 ~v~IVVtTi~~p----~~L~~~~~~-~~--~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~---~~~~~lP--- 81 (261)
.++||||++++. ++|+++.+. ++ .+++|||.|....++... .+++.. .....++
T Consensus 2 ~vsIiIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i-------------~~~~~~~~~~~i~~~~~~~ 68 (241)
T cd06427 2 VYTILVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAA-------------ARALRLPSIFRVVVVPPSQ 68 (241)
T ss_pred eEEEEEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHH-------------HHHhccCCCeeEEEecCCC
Confidence 489999999987 688887764 44 489999988722222111 111100 0011122
Q ss_pred -cCcccccceeEEEEeceEEEeecCCCcccCCCCCccchhhh
Q 024882 82 -FKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALE 122 (261)
Q Consensus 82 -~~s~arRN~GYL~A~a~~I~~~DDDn~P~~~~~g~~~d~~~ 122 (261)
.+..+++|.|+..|.++||+++|+|+.+.++++.+.+..+.
T Consensus 69 ~~G~~~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~ 110 (241)
T cd06427 69 PRTKPKACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFA 110 (241)
T ss_pred CCchHHHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHH
Confidence 23467899999999999999999999999987665555554
No 5
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=98.14 E-value=4.7e-07 Score=77.60 Aligned_cols=99 Identities=12% Similarity=0.134 Sum_probs=59.9
Q ss_pred CeEEEEecccCh-----hHHHhhhcc-cCC--eEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccccC-cc
Q 024882 15 ELDIVIPTIRNL-----DFLEMWRPF-FEP--YHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFK-DS 85 (261)
Q Consensus 15 ~v~IVVtTi~~p-----~~L~~~~~~-~~~--~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~lP~~-s~ 85 (261)
.++||||++++. +||+++.+. .+. |++|||.|....++.+.-+.+.. ..+-+++.. -..-+ ..
T Consensus 2 ~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~-----~~~~~~~~~---~~~~~~~~ 73 (234)
T cd06421 2 TVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGV-----EYGYRYLTR---PDNRHAKA 73 (234)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhc-----ccCceEEEe---CCCCCCcH
Confidence 489999999964 477777765 677 99999999832222222111100 000011100 00111 23
Q ss_pred cccceeEEEEeceEEEeecCCCcccCCCCCccchhh
Q 024882 86 ACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINAL 121 (261)
Q Consensus 86 arRN~GYL~A~a~~I~~~DDDn~P~~~~~g~~~d~~ 121 (261)
++.|.|.-.|.++||+++|+|+.+.++++.+.+..+
T Consensus 74 ~~~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~ 109 (234)
T cd06421 74 GNLNNALAHTTGDFVAILDADHVPTPDFLRRTLGYF 109 (234)
T ss_pred HHHHHHHHhCCCCEEEEEccccCcCccHHHHHHHHH
Confidence 457888888899999999999999888644444443
No 6
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.11 E-value=1.3e-06 Score=72.06 Aligned_cols=89 Identities=11% Similarity=0.058 Sum_probs=58.4
Q ss_pred EEEEecccCh----hHHHhhhcc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccccCccccccee
Q 024882 17 DIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSACRCFG 91 (261)
Q Consensus 17 ~IVVtTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~lP~~s~arRN~G 91 (261)
+|||||++++ +||+++.+. .+++++|||.|....++..... ....+. -.....-..+...++|.|
T Consensus 1 sivi~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~--------~~~~~~--~~~~~~~~~g~~~a~n~~ 70 (202)
T cd06433 1 SIITPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIK--------KYEDKI--TYWISEPDKGIYDAMNKG 70 (202)
T ss_pred CEEEeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHH--------HhHhhc--EEEEecCCcCHHHHHHHH
Confidence 5899999988 577777665 7789999999873222211110 000000 000111124567888999
Q ss_pred EEEEeceEEEeecCCCcccCCCCC
Q 024882 92 YMVSKKKYIFTIDDDCFVAKDPSG 115 (261)
Q Consensus 92 YL~A~a~~I~~~DDDn~P~~~~~g 115 (261)
+-.|.++||+++|+|+.+.++++.
T Consensus 71 ~~~a~~~~v~~ld~D~~~~~~~~~ 94 (202)
T cd06433 71 IALATGDIIGFLNSDDTLLPGALL 94 (202)
T ss_pred HHHcCCCEEEEeCCCcccCchHHH
Confidence 999999999999999999987533
No 7
>PRK10073 putative glycosyl transferase; Provisional
Probab=98.00 E-value=1.6e-06 Score=81.27 Aligned_cols=97 Identities=24% Similarity=0.308 Sum_probs=64.1
Q ss_pred CeEEEEecccCh----hHHHhhhcc-cCCeEEEEEecCCCCcccccCCCccccccChhh-hhhhhCCCccccccCccccc
Q 024882 15 ELDIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRND-INRILGPKASCISFKDSACR 88 (261)
Q Consensus 15 ~v~IVVtTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~d-q~~~l~~~~~~lP~~s~arR 88 (261)
.++||||+++.. +||+++.+. ++++|+|||.|+..-.+...-..+ ...+ +-++.. .-.-+..++|
T Consensus 7 ~vSVIIP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~-----~~~~~~i~vi~----~~n~G~~~ar 77 (328)
T PRK10073 7 KLSIIIPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHY-----AENYPHVRLLH----QANAGVSVAR 77 (328)
T ss_pred eEEEEEeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHH-----HhhCCCEEEEE----CCCCChHHHH
Confidence 599999999987 577777765 789999999998322221111110 0000 000111 1124577889
Q ss_pred ceeEEEEeceEEEeecCCCcccCCCCCccchh
Q 024882 89 CFGYMVSKKKYIFTIDDDCFVAKDPSGKEINA 120 (261)
Q Consensus 89 N~GYL~A~a~~I~~~DDDn~P~~~~~g~~~d~ 120 (261)
|.|.-.|.++||+|+|+|....++.+.+.++.
T Consensus 78 N~gl~~a~g~yi~flD~DD~~~p~~l~~l~~~ 109 (328)
T PRK10073 78 NTGLAVATGKYVAFPDADDVVYPTMYETLMTM 109 (328)
T ss_pred HHHHHhCCCCEEEEECCCCccChhHHHHHHHH
Confidence 99999999999999999999888754444443
No 8
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=97.97 E-value=1.5e-06 Score=73.15 Aligned_cols=94 Identities=13% Similarity=0.158 Sum_probs=61.0
Q ss_pred EEEEecccCh------hHHHhhhcc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCC-cccc--c--cCc
Q 024882 17 DIVIPTIRNL------DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPK-ASCI--S--FKD 84 (261)
Q Consensus 17 ~IVVtTi~~p------~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~-~~~l--P--~~s 84 (261)
+|||||+++. +||+++.+. .+.+++|||.|....+. +.+-.+++.... ..++ + .+.
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~------------t~~~~~~~~~~~~i~~i~~~~n~G~ 68 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQS------------LNEVLEEFKRKLPLKVVPLEKNRGL 68 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchh------------HHHHHHHHHhcCCeEEEEcCccccH
Confidence 5899999862 588887765 67899999999721110 000011111110 1111 1 245
Q ss_pred ccccceeEEEEeceEEEeecCCCcccCCCCCccchhhh
Q 024882 85 SACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALE 122 (261)
Q Consensus 85 ~arRN~GYL~A~a~~I~~~DDDn~P~~~~~g~~~d~~~ 122 (261)
..++|.|+..|.++||+++|+|..+.++++...++.++
T Consensus 69 ~~a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~ 106 (201)
T cd04195 69 GKALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIE 106 (201)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHH
Confidence 78899999999999999999999999886555555443
No 9
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.96 E-value=7.3e-06 Score=69.73 Aligned_cols=86 Identities=19% Similarity=0.293 Sum_probs=58.4
Q ss_pred eEEEEecccCh----hHHHhhhcc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccccCcccccce
Q 024882 16 LDIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSACRCF 90 (261)
Q Consensus 16 v~IVVtTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~lP~~s~arRN~ 90 (261)
++||||+++++ +||+++.+. .+.+++|||.|....++...- ++ ........+.+...++|.
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~-------------~~-~~~~~~~~~~g~~~a~n~ 66 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIA-------------RS-AGVVVISSPKGRARQMNA 66 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHH-------------hc-CCeEEEeCCcCHHHHHHH
Confidence 58999999987 577787765 578999999887222111111 00 000000122345677899
Q ss_pred eEEEEeceEEEeecCCCcccCCCCC
Q 024882 91 GYMVSKKKYIFTIDDDCFVAKDPSG 115 (261)
Q Consensus 91 GYL~A~a~~I~~~DDDn~P~~~~~g 115 (261)
|...|.+++|+++|+|+.+.++++.
T Consensus 67 g~~~a~~~~i~~~D~D~~~~~~~l~ 91 (221)
T cd02522 67 GAAAARGDWLLFLHADTRLPPDWDA 91 (221)
T ss_pred HHHhccCCEEEEEcCCCCCChhHHH
Confidence 9999999999999999999887633
No 10
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=97.96 E-value=3.9e-06 Score=76.35 Aligned_cols=99 Identities=12% Similarity=0.061 Sum_probs=63.4
Q ss_pred EEEEecccCh-h----HHHhhhcc-cC--CeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCcccc----ccCc
Q 024882 17 DIVIPTIRNL-D----FLEMWRPF-FE--PYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCI----SFKD 84 (261)
Q Consensus 17 ~IVVtTi~~p-~----~L~~~~~~-~~--~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~l----P~~s 84 (261)
+|||||+++. + ||+++.+. .+ .+|||||.|.....+...- .....++. ....+++ ..+-
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~--------~~~~~~~~-~~~v~vi~~~~n~G~ 71 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLL--------LEEYYKKY-LPKVKVLRLKKREGL 71 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHH--------HHHHHhhc-CCcEEEEEcCCCCCH
Confidence 5999999987 4 67776654 22 3699999998221111110 00000000 0112222 2445
Q ss_pred ccccceeEEEEeceEEEeecCCCcccCCCCCccchhhhhh
Q 024882 85 SACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALEQH 124 (261)
Q Consensus 85 ~arRN~GYL~A~a~~I~~~DDDn~P~~~~~g~~~d~~~~~ 124 (261)
.+.+|.|...|.++||+++|+|+.+.++|+.+.++.+.++
T Consensus 72 ~~a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~ 111 (299)
T cd02510 72 IRARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAEN 111 (299)
T ss_pred HHHHHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhC
Confidence 7889999999999999999999999999977777666654
No 11
>PRK10018 putative glycosyl transferase; Provisional
Probab=97.96 E-value=6e-06 Score=76.04 Aligned_cols=94 Identities=20% Similarity=0.262 Sum_probs=61.7
Q ss_pred CeEEEEecccCh----hHHHhhhcc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCcccc----ccCcc
Q 024882 15 ELDIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCI----SFKDS 85 (261)
Q Consensus 15 ~v~IVVtTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~l----P~~s~ 85 (261)
.++|||||+++. +||+++... ++.||+|||.|.. +. . +. ..+-.+++......++ ..+.+
T Consensus 6 ~VSVIip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS------~~--~--~~-~~~~~~~~~~~ri~~i~~~~n~G~~ 74 (279)
T PRK10018 6 LISIYMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCS------TS--W--EQ-LQQYVTALNDPRITYIHNDINSGAC 74 (279)
T ss_pred EEEEEEEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCC------CC--H--HH-HHHHHHHcCCCCEEEEECCCCCCHH
Confidence 499999999997 467666654 8899999999982 20 0 00 0011111111111111 24467
Q ss_pred cccceeEEEEeceEEEeecCCCcccCCCCCccch
Q 024882 86 ACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEIN 119 (261)
Q Consensus 86 arRN~GYL~A~a~~I~~~DDDn~P~~~~~g~~~d 119 (261)
+++|.|.-.|.++||+++|+|....++.+...+.
T Consensus 75 ~a~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~ 108 (279)
T PRK10018 75 AVRNQAIMLAQGEYITGIDDDDEWTPNRLSVFLA 108 (279)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCccHHHHHHH
Confidence 8899999999999999999999988875443333
No 12
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=97.95 E-value=6.6e-06 Score=71.42 Aligned_cols=91 Identities=13% Similarity=0.246 Sum_probs=55.7
Q ss_pred CeEEEEecccCh----hHHHhhhcc-cC--CeEEEEEecCCCCcccccCCCccccccChhhhhhhh--CCCcccccc---
Q 024882 15 ELDIVIPTIRNL----DFLEMWRPF-FE--PYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRIL--GPKASCISF--- 82 (261)
Q Consensus 15 ~v~IVVtTi~~p----~~L~~~~~~-~~--~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l--~~~~~~lP~--- 82 (261)
.++||||++++. +||+++.+. .+ .+++|||.|..+. +...- . +.++++. ......+..
T Consensus 2 ~vSViIp~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~-t~~~~--------~-~~~~~~~~~~~~i~~~~~~~~ 71 (232)
T cd06437 2 MVTVQLPVFNEKYVVERLIEAACALDYPKDRLEIQVLDDSTDE-TVRLA--------R-EIVEEYAAQGVNIKHVRRADR 71 (232)
T ss_pred ceEEEEecCCcHHHHHHHHHHHHhcCCCccceEEEEEECCCCc-HHHHH--------H-HHHHHHhhcCCceEEEECCCC
Confidence 389999999987 577777764 43 4788888765211 11111 0 0011111 111111211
Q ss_pred -C-cccccceeEEEEeceEEEeecCCCcccCCCCC
Q 024882 83 -K-DSACRCFGYMVSKKKYIFTIDDDCFVAKDPSG 115 (261)
Q Consensus 83 -~-s~arRN~GYL~A~a~~I~~~DDDn~P~~~~~g 115 (261)
+ ....+|.|+-.|.++||+++|.|+.+.++|+.
T Consensus 72 ~G~k~~a~n~g~~~a~~~~i~~~DaD~~~~~~~l~ 106 (232)
T cd06437 72 TGYKAGALAEGMKVAKGEYVAIFDADFVPPPDFLQ 106 (232)
T ss_pred CCCchHHHHHHHHhCCCCEEEEEcCCCCCChHHHH
Confidence 1 23467999998999999999999999988633
No 13
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.95 E-value=1.9e-06 Score=72.52 Aligned_cols=91 Identities=16% Similarity=0.183 Sum_probs=58.0
Q ss_pred EEEEecccCh----hHHHhhhcc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCC---Ccccc--c--cCc
Q 024882 17 DIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP---KASCI--S--FKD 84 (261)
Q Consensus 17 ~IVVtTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~---~~~~l--P--~~s 84 (261)
+|||||+++. +||+++.+. .+.+++|||.|+...++.... +++... ....+ + .+.
T Consensus 1 sIvIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~-------------~~~~~~~~~~~~~~~~~~~~G~ 67 (214)
T cd04196 1 AVLMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEII-------------KEYIDKDPFIIILIRNGKNLGV 67 (214)
T ss_pred CEEEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHH-------------HHHHhcCCceEEEEeCCCCccH
Confidence 5899999987 577777665 678999999998322221111 111111 00111 1 234
Q ss_pred ccccceeEEEEeceEEEeecCCCcccCCCCCccchh
Q 024882 85 SACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINA 120 (261)
Q Consensus 85 ~arRN~GYL~A~a~~I~~~DDDn~P~~~~~g~~~d~ 120 (261)
....|.|+..|.+|||+++|+|....++++.+.++.
T Consensus 68 ~~~~n~g~~~~~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 68 ARNFESLLQAADGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred HHHHHHHHHhCCCCEEEEECCCcccChhHHHHHHHH
Confidence 555667888888999999999999888764444443
No 14
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=97.94 E-value=2.5e-06 Score=73.43 Aligned_cols=92 Identities=14% Similarity=0.169 Sum_probs=57.9
Q ss_pred EEEecccCh----hHHHhhhcc-cC-CeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCcccc--------ccC
Q 024882 18 IVIPTIRNL----DFLEMWRPF-FE-PYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCI--------SFK 83 (261)
Q Consensus 18 IVVtTi~~p----~~L~~~~~~-~~-~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~l--------P~~ 83 (261)
||||++++. +||+++.+. ++ .+++|||.|.....+...-.. ..+++.......+ ..+
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~---------~~~~~~~~~~~~~~~~~~~~~~~G 71 (219)
T cd06913 1 IILPVHNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEK---------WRKKLEDSGVIVLVGSHNSPSPKG 71 (219)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHH---------HHHhCcccCeEEEEecccCCCCcc
Confidence 799999987 577777764 55 699999999832222111100 0111111111111 123
Q ss_pred cccccceeEEEEeceEEEeecCCCcccCCCCCccc
Q 024882 84 DSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEI 118 (261)
Q Consensus 84 s~arRN~GYL~A~a~~I~~~DDDn~P~~~~~g~~~ 118 (261)
..++||.|...|.++||.++|+|..+.++++.+.+
T Consensus 72 ~~~a~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~ 106 (219)
T cd06913 72 VGYAKNQAIAQSSGRYLCFLDSDDVMMPQRIRLQY 106 (219)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccCChhHHHHHH
Confidence 56788999999999999999999998887644333
No 15
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=97.94 E-value=2.4e-06 Score=73.57 Aligned_cols=97 Identities=15% Similarity=0.208 Sum_probs=59.0
Q ss_pred CeEEEEecccCh-h----HHHhhhcccCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCcccc-ccCccccc
Q 024882 15 ELDIVIPTIRNL-D----FLEMWRPFFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCI-SFKDSACR 88 (261)
Q Consensus 15 ~v~IVVtTi~~p-~----~L~~~~~~~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~l-P~~s~arR 88 (261)
+++||||+++++ + ||+++.+.. .+++|||.|....++.... .+..+......... -.+-....
T Consensus 1 ~isVvIp~~ne~~~~l~~~l~sl~~q~-~~eiivvdd~s~d~~~~~l----------~~~~~~~~~~v~~~~~~g~~~a~ 69 (235)
T cd06434 1 DVTVIIPVYDEDPDVFRECLRSILRQK-PLEIIVVTDGDDEPYLSIL----------SQTVKYGGIFVITVPHPGKRRAL 69 (235)
T ss_pred CeEEEEeecCCChHHHHHHHHHHHhCC-CCEEEEEeCCCChHHHHHH----------HhhccCCcEEEEecCCCChHHHH
Confidence 479999999987 4 666665434 8899999988332221110 00000000000000 02234556
Q ss_pred ceeEEEEeceEEEeecCCCcccCCCCCccchhhh
Q 024882 89 CFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALE 122 (261)
Q Consensus 89 N~GYL~A~a~~I~~~DDDn~P~~~~~g~~~d~~~ 122 (261)
|.|...|.++||+++|+|+.+.++++.+.+..+.
T Consensus 70 n~g~~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 70 AEGIRHVTTDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred HHHHHHhCCCEEEEECCCceeChhHHHHHHHhcc
Confidence 7888888999999999999999997555554443
No 16
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.90 E-value=2.1e-05 Score=61.16 Aligned_cols=87 Identities=20% Similarity=0.198 Sum_probs=60.1
Q ss_pred CCCeEEEEecccCh----hHHHhhhcc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCC---Ccc---ccc
Q 024882 13 KDELDIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP---KAS---CIS 81 (261)
Q Consensus 13 ~~~v~IVVtTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~---~~~---~lP 81 (261)
+-.++|||||+++. .+|+++.+. ...+++|||.|+ .+-. +.+..+++... ... .--
T Consensus 2 ~~~~siiip~~n~~~~l~~~l~s~~~q~~~~~eiivvddg------s~d~-------t~~~~~~~~~~~~~~~~~~~~~~ 68 (291)
T COG0463 2 MPKVSVVIPTYNEEEYLPEALESLLNQTYKDFEIIVVDDG------STDG-------TTEIAIEYGAKDVRVIRLINERN 68 (291)
T ss_pred CccEEEEEeccchhhhHHHHHHHHHhhhhcceEEEEEeCC------CCCC-------hHHHHHHHhhhcceEEEeecccC
Confidence 35799999999987 577777765 677899999998 3321 11111222211 100 112
Q ss_pred cCcccccceeEEEEeceEEEeecCCCcccCCC
Q 024882 82 FKDSACRCFGYMVSKKKYIFTIDDDCFVAKDP 113 (261)
Q Consensus 82 ~~s~arRN~GYL~A~a~~I~~~DDDn~P~~~~ 113 (261)
.+-..++|.|+.++.+++|.++|.|.. ++..
T Consensus 69 ~g~~~~~~~~~~~~~~~~~~~~d~d~~-~~~~ 99 (291)
T COG0463 69 GGLGAARNAGLEYARGDYIVFLDADDQ-HPPE 99 (291)
T ss_pred CChHHHHHhhHHhccCCEEEEEccCCC-CCHH
Confidence 457888999999999999999999999 8875
No 17
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=97.90 E-value=2.5e-06 Score=70.43 Aligned_cols=83 Identities=24% Similarity=0.352 Sum_probs=54.9
Q ss_pred EEEecccCh----hHHHhhhcc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhC----CCccc--c--ccCc
Q 024882 18 IVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG----PKASC--I--SFKD 84 (261)
Q Consensus 18 IVVtTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~----~~~~~--l--P~~s 84 (261)
||||+++++ +||+++.+. .+.+++|||.|.....+.. -.+++.. ..... - .++.
T Consensus 1 ivip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (182)
T cd06420 1 LIITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKE-------------LIEEFKSQFPIPIKHVWQEDEGFRK 67 (182)
T ss_pred CEEeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHH-------------HHHHHHhhcCCceEEEEcCCcchhH
Confidence 799999988 577777665 6789999999982211111 1111111 00000 0 1234
Q ss_pred ccccceeEEEEeceEEEeecCCCcccCCC
Q 024882 85 SACRCFGYMVSKKKYIFTIDDDCFVAKDP 113 (261)
Q Consensus 85 ~arRN~GYL~A~a~~I~~~DDDn~P~~~~ 113 (261)
.+.+|.|.-.|.++||+++|+|+.|.++|
T Consensus 68 ~~~~n~g~~~a~g~~i~~lD~D~~~~~~~ 96 (182)
T cd06420 68 AKIRNKAIAAAKGDYLIFIDGDCIPHPDF 96 (182)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCcccCHHH
Confidence 56789999999999999999999998775
No 18
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=97.90 E-value=5.8e-06 Score=65.34 Aligned_cols=85 Identities=15% Similarity=0.283 Sum_probs=57.2
Q ss_pred EEEecccCh----hHHHhhhcc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhC---CCccc----cccCcc
Q 024882 18 IVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG---PKASC----ISFKDS 85 (261)
Q Consensus 18 IVVtTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~---~~~~~----lP~~s~ 85 (261)
||||+++++ ++|+++.+. .+.+++|||.|....++.... +++.. ..... =..+..
T Consensus 1 Viip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~-------------~~~~~~~~~~~~~~~~~~~~g~~ 67 (180)
T cd06423 1 IIVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEIL-------------EELAALYIRRVLVVRDKENGGKA 67 (180)
T ss_pred CeecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHH-------------HHHhccccceEEEEEecccCCch
Confidence 689999997 577777665 579999999998332222111 11111 00001 124467
Q ss_pred cccceeEEEEeceEEEeecCCCcccCCCCC
Q 024882 86 ACRCFGYMVSKKKYIFTIDDDCFVAKDPSG 115 (261)
Q Consensus 86 arRN~GYL~A~a~~I~~~DDDn~P~~~~~g 115 (261)
.++|.|+..+.++||.++|+|..+.++++.
T Consensus 68 ~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~ 97 (180)
T cd06423 68 GALNAGLRHAKGDIVVVLDADTILEPDALK 97 (180)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcChHHHH
Confidence 888999888899999999999999887533
No 19
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=97.89 E-value=3e-06 Score=73.99 Aligned_cols=100 Identities=14% Similarity=0.190 Sum_probs=62.7
Q ss_pred CCCCeEEEEecccCh----hHHHhhhcc-cCC--eEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccccCc
Q 024882 12 LKDELDIVIPTIRNL----DFLEMWRPF-FEP--YHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKD 84 (261)
Q Consensus 12 ~~~~v~IVVtTi~~p----~~L~~~~~~-~~~--~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~lP~~s 84 (261)
....++||||++++. +||+++.+. .+. +++|||.|.....+......+.. . .-++..... ..+.
T Consensus 27 ~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~-----~-~v~~i~~~~---~~g~ 97 (251)
T cd06439 27 YLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYAD-----K-GVKLLRFPE---RRGK 97 (251)
T ss_pred CCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhh-----C-cEEEEEcCC---CCCh
Confidence 344599999999987 577777664 544 89999999833333222211100 0 000000000 1345
Q ss_pred ccccceeEEEEeceEEEeecCCCcccCCCCCccchh
Q 024882 85 SACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINA 120 (261)
Q Consensus 85 ~arRN~GYL~A~a~~I~~~DDDn~P~~~~~g~~~d~ 120 (261)
...+|.|+-.|.++||+++|+|+.+.++++.+.+..
T Consensus 98 ~~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~ 133 (251)
T cd06439 98 AAALNRALALATGEIVVFTDANALLDPDALRLLVRH 133 (251)
T ss_pred HHHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHH
Confidence 667888988888999999999999987764444433
No 20
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.88 E-value=5.7e-06 Score=70.32 Aligned_cols=92 Identities=15% Similarity=0.217 Sum_probs=56.7
Q ss_pred EEEecccCh----hHHHhhhcc-cCC--eEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccccC------c
Q 024882 18 IVIPTIRNL----DFLEMWRPF-FEP--YHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFK------D 84 (261)
Q Consensus 18 IVVtTi~~p----~~L~~~~~~-~~~--~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~lP~~------s 84 (261)
|||||++++ +||+++.+. .+. +++|||.|.....+...- . .+.+........++.. -
T Consensus 1 viip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~--------~--~~~~~~~~~v~~~~~~~~~~~g~ 70 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQIL--------E--FAAAKPNFQLKILNNSRVSISGK 70 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHH--------H--HHHhCCCcceEEeeccCcccchh
Confidence 799999987 588888765 666 999999998221111110 0 0111111112222222 2
Q ss_pred ccccceeEEEEeceEEEeecCCCcccCCCCCccch
Q 024882 85 SACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEIN 119 (261)
Q Consensus 85 ~arRN~GYL~A~a~~I~~~DDDn~P~~~~~g~~~d 119 (261)
...+|.|.-.|.++||+++|+|+.+.++|+.+.+.
T Consensus 71 ~~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~~ 105 (229)
T cd04192 71 KNALTTAIKAAKGDWIVTTDADCVVPSNWLLTFVA 105 (229)
T ss_pred HHHHHHHHHHhcCCEEEEECCCcccCHHHHHHHHH
Confidence 33467777777899999999999999886444443
No 21
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=97.87 E-value=3.2e-06 Score=70.98 Aligned_cols=97 Identities=18% Similarity=0.210 Sum_probs=61.7
Q ss_pred CeEEEEecccCh-----hHHHhhhcc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccc--cc--cCc
Q 024882 15 ELDIVIPTIRNL-----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASC--IS--FKD 84 (261)
Q Consensus 15 ~v~IVVtTi~~p-----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~--lP--~~s 84 (261)
.++||||++++. +||+++.+. .+.+++|||.|.....+.+.. .....++ .....+ .+ .+.
T Consensus 2 ~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~--------~~~~~~~--~~~~~~~~~~~~~g~ 71 (202)
T cd04184 2 LISIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRV--------LKKYAAQ--DPRIKVVFREENGGI 71 (202)
T ss_pred eEEEEEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHH--------HHHHHhc--CCCEEEEEcccCCCH
Confidence 489999999986 477887765 778999999988221111000 0000000 000111 11 234
Q ss_pred ccccceeEEEEeceEEEeecCCCcccCCCCCccchhh
Q 024882 85 SACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINAL 121 (261)
Q Consensus 85 ~arRN~GYL~A~a~~I~~~DDDn~P~~~~~g~~~d~~ 121 (261)
..++|.|+-.|.++||.++|+|+.+.++++.+.+..+
T Consensus 72 ~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 72 SAATNSALELATGEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred HHHHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHH
Confidence 5778999999999999999999999988755444443
No 22
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=97.86 E-value=1.9e-06 Score=73.51 Aligned_cols=94 Identities=17% Similarity=0.210 Sum_probs=58.0
Q ss_pred EEEecccCh----hHHHhhhcc-c-CCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccccCccccccee
Q 024882 18 IVIPTIRNL----DFLEMWRPF-F-EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSACRCFG 91 (261)
Q Consensus 18 IVVtTi~~p----~~L~~~~~~-~-~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~lP~~s~arRN~G 91 (261)
||||+++++ .+|+++.+. . ..+++|||.|.....+......+. ....+.+++. .--..+...++|.|
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~----~~~~~i~~~~---~~~n~G~~~a~n~g 73 (224)
T cd06442 1 IIIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELA----KEYPRVRLIV---RPGKRGLGSAYIEG 73 (224)
T ss_pred CeEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHH----HhCCceEEEe---cCCCCChHHHHHHH
Confidence 699999987 567776654 3 789999999982211111110000 0000000010 11224567889999
Q ss_pred EEEEeceEEEeecCCCcccCCCCCccc
Q 024882 92 YMVSKKKYIFTIDDDCFVAKDPSGKEI 118 (261)
Q Consensus 92 YL~A~a~~I~~~DDDn~P~~~~~g~~~ 118 (261)
...|.++||+++|+|+.+.++|+...+
T Consensus 74 ~~~a~gd~i~~lD~D~~~~~~~l~~l~ 100 (224)
T cd06442 74 FKAARGDVIVVMDADLSHPPEYIPELL 100 (224)
T ss_pred HHHcCCCEEEEEECCCCCCHHHHHHHH
Confidence 999999999999999999887643333
No 23
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=97.84 E-value=9.5e-06 Score=69.82 Aligned_cols=92 Identities=21% Similarity=0.258 Sum_probs=59.8
Q ss_pred eEEEEecccCh----hHHHhhhcc-c--CCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCC--Cccccc---cC
Q 024882 16 LDIVIPTIRNL----DFLEMWRPF-F--EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP--KASCIS---FK 83 (261)
Q Consensus 16 v~IVVtTi~~p----~~L~~~~~~-~--~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~--~~~~lP---~~ 83 (261)
++|||||++++ ++|+.+.+. . ..+++|||.|....++...- +++... ...++. .+
T Consensus 2 ~sIiip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~-------------~~~~~~~~~v~~i~~~~~~ 68 (249)
T cd02525 2 VSIIIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIV-------------QEYAAKDPRIRLIDNPKRI 68 (249)
T ss_pred EEEEEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHH-------------HHHHhcCCeEEEEeCCCCC
Confidence 78999999987 466777654 4 57999999887322221111 111100 011111 12
Q ss_pred cccccceeEEEEeceEEEeecCCCcccCCCCCccchh
Q 024882 84 DSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINA 120 (261)
Q Consensus 84 s~arRN~GYL~A~a~~I~~~DDDn~P~~~~~g~~~d~ 120 (261)
...++|.|.-.|.++||.++|+|+.+.++++.+..+.
T Consensus 69 ~~~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~~~~~ 105 (249)
T cd02525 69 QSAGLNIGIRNSRGDIIIRVDAHAVYPKDYILELVEA 105 (249)
T ss_pred chHHHHHHHHHhCCCEEEEECCCccCCHHHHHHHHHH
Confidence 4467899999899999999999999988875544443
No 24
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=97.80 E-value=1.2e-05 Score=68.40 Aligned_cols=91 Identities=16% Similarity=0.176 Sum_probs=56.1
Q ss_pred CeEEEEecccCh----hHHHhhhcc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCcccc--c--cCc-
Q 024882 15 ELDIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCI--S--FKD- 84 (261)
Q Consensus 15 ~v~IVVtTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~l--P--~~s- 84 (261)
.++||||++++. +||+++.+. ++.+++|||.|....++.+.-..+ .++.......++ + .+.
T Consensus 2 ~vsviip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~ 72 (196)
T cd02520 2 GVSILKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKL---------IAKYPNVDARLLIGGEKVGIN 72 (196)
T ss_pred CeEEEEecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHH---------HHHCCCCcEEEEecCCcCCCC
Confidence 389999999976 688888775 788999999998322221111000 000000001111 1 111
Q ss_pred c--cccceeEEEEeceEEEeecCCCcccCCCC
Q 024882 85 S--ACRCFGYMVSKKKYIFTIDDDCFVAKDPS 114 (261)
Q Consensus 85 ~--arRN~GYL~A~a~~I~~~DDDn~P~~~~~ 114 (261)
. .+.|.|+-.|.+|||+++|+|+.+.++|+
T Consensus 73 ~~~~~~n~g~~~a~~d~i~~~D~D~~~~~~~l 104 (196)
T cd02520 73 PKVNNLIKGYEEARYDILVISDSDISVPPDYL 104 (196)
T ss_pred HhHHHHHHHHHhCCCCEEEEECCCceEChhHH
Confidence 1 12356888888999999999999988763
No 25
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.75 E-value=6e-06 Score=66.19 Aligned_cols=83 Identities=14% Similarity=0.261 Sum_probs=56.2
Q ss_pred EEEecccCh----hHHHhhhcc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCC---ccccccCcccccc
Q 024882 18 IVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPK---ASCISFKDSACRC 89 (261)
Q Consensus 18 IVVtTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~---~~~lP~~s~arRN 89 (261)
||||+++++ ++|+++.+. .+.+++|||.|....++.... ++..... ..--..+...++|
T Consensus 1 vii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~-------------~~~~~~~~~~~~~~~~g~~~a~n 67 (166)
T cd04186 1 IIIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELL-------------RELFPEVRLIRNGENLGFGAGNN 67 (166)
T ss_pred CEEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHH-------------HHhCCCeEEEecCCCcChHHHhh
Confidence 689999998 466777664 578999999998322221111 1111000 0001245778889
Q ss_pred eeEEEEeceEEEeecCCCcccCCC
Q 024882 90 FGYMVSKKKYIFTIDDDCFVAKDP 113 (261)
Q Consensus 90 ~GYL~A~a~~I~~~DDDn~P~~~~ 113 (261)
.|.-.|.+++|.++|||+.+.+++
T Consensus 68 ~~~~~~~~~~i~~~D~D~~~~~~~ 91 (166)
T cd04186 68 QGIREAKGDYVLLLNPDTVVEPGA 91 (166)
T ss_pred HHHhhCCCCEEEEECCCcEECccH
Confidence 999999999999999999998875
No 26
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=97.72 E-value=3e-05 Score=73.81 Aligned_cols=102 Identities=12% Similarity=0.141 Sum_probs=63.2
Q ss_pred CCCCeEEEEecccCh----hHHHhhhcc-cC-CeEEEEEecCCCCcccccCCCccccccChhhhhhhhC-CCcccc----
Q 024882 12 LKDELDIVIPTIRNL----DFLEMWRPF-FE-PYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG-PKASCI---- 80 (261)
Q Consensus 12 ~~~~v~IVVtTi~~p----~~L~~~~~~-~~-~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~-~~~~~l---- 80 (261)
..-.++||||++++. +||+++.+. ++ .+|+|||.|...-++......+ .++... ....++
T Consensus 38 ~~p~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~---------~~~~~~~~~i~vi~~~~ 108 (384)
T TIGR03469 38 AWPAVVAVVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAA---------ARAYGRGDRLTVVSGQP 108 (384)
T ss_pred CCCCEEEEEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHH---------HHhcCCCCcEEEecCCC
Confidence 344699999999986 688888765 65 6999999998222221111000 000000 011112
Q ss_pred -ccC---cccccceeEEEEe-----ceEEEeecCCCcccCCCCCccchhhh
Q 024882 81 -SFK---DSACRCFGYMVSK-----KKYIFTIDDDCFVAKDPSGKEINALE 122 (261)
Q Consensus 81 -P~~---s~arRN~GYL~A~-----a~~I~~~DDDn~P~~~~~g~~~d~~~ 122 (261)
|.+ ...+.|.|+..|. +|||+++|+|+.+.++++.+.+..++
T Consensus 109 ~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~ 159 (384)
T TIGR03469 109 LPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARAR 159 (384)
T ss_pred CCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHH
Confidence 111 1235678888888 99999999999999987655555544
No 27
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=97.71 E-value=5.3e-06 Score=71.22 Aligned_cols=96 Identities=20% Similarity=0.274 Sum_probs=50.2
Q ss_pred eEEEEecccCh----hHHHhhhcc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccccC-------
Q 024882 16 LDIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFK------- 83 (261)
Q Consensus 16 v~IVVtTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~lP~~------- 83 (261)
++||||+++++ ++|+++... .+++++|||.|....++.+.- .+-++++.....+.++..
T Consensus 3 v~Vvip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~---------~~~~~~~~~~~v~vi~~~~~~g~~~ 73 (228)
T PF13641_consen 3 VSVVIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEIL---------RALAARYPRVRVRVIRRPRNPGPGG 73 (228)
T ss_dssp EEEE--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTH---------HHHHHTTGG-GEEEEE----HHHHH
T ss_pred EEEEEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHH---------HHHHHHcCCCceEEeecCCCCCcch
Confidence 89999999997 577777764 688999999987433332111 011111221112222221
Q ss_pred cccccceeEEEEeceEEEeecCCCcccCCCCCccchh
Q 024882 84 DSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINA 120 (261)
Q Consensus 84 s~arRN~GYL~A~a~~I~~~DDDn~P~~~~~g~~~d~ 120 (261)
-....|.|.-.+.+++|+++|||+.+.++++...+..
T Consensus 74 k~~a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~ 110 (228)
T PF13641_consen 74 KARALNEALAAARGDYILFLDDDTVLDPDWLERLLAA 110 (228)
T ss_dssp HHHHHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHH
Confidence 1233477777778999999999999988754433333
No 28
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=97.68 E-value=1.9e-05 Score=69.57 Aligned_cols=100 Identities=14% Similarity=0.129 Sum_probs=61.2
Q ss_pred CCCeEEEEecccCh----hHHHhhhcc---cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccc----
Q 024882 13 KDELDIVIPTIRNL----DFLEMWRPF---FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCIS---- 81 (261)
Q Consensus 13 ~~~v~IVVtTi~~p----~~L~~~~~~---~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~lP---- 81 (261)
+-+++||||++++. ++++.+.+. ...+|+|||.|...-.+...- .. -.++........++
T Consensus 8 ~~~vsVvIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~--------~~-~~~~~~~~~v~~~~~~~n 78 (243)
T PLN02726 8 AMKYSIIVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVV--------KQ-LQKVYGEDRILLRPRPGK 78 (243)
T ss_pred CceEEEEEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHH--------HH-HHHhcCCCcEEEEecCCC
Confidence 34699999999986 355555442 458999999998322221111 00 00001111111221
Q ss_pred cCcccccceeEEEEeceEEEeecCCCcccCCCCCccchhh
Q 024882 82 FKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINAL 121 (261)
Q Consensus 82 ~~s~arRN~GYL~A~a~~I~~~DDDn~P~~~~~g~~~d~~ 121 (261)
.+..++.|.|...|.++||+++|.|+.+.++++.+.++.+
T Consensus 79 ~G~~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~ 118 (243)
T PLN02726 79 LGLGTAYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQ 118 (243)
T ss_pred CCHHHHHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHH
Confidence 3456678888888899999999999998887655444443
No 29
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=97.68 E-value=2.8e-05 Score=67.23 Aligned_cols=96 Identities=14% Similarity=0.235 Sum_probs=57.5
Q ss_pred EEEEecccCh-----hHHHhhhcc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCcccc----ccCc-c
Q 024882 17 DIVIPTIRNL-----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCI----SFKD-S 85 (261)
Q Consensus 17 ~IVVtTi~~p-----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~l----P~~s-~ 85 (261)
+||||++++. +||+.+... .+++++|||.|.....+.... . .+-.++ .+....++ ..+. .
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~-------i-~~~~~~-~~~~i~~i~~~~~~G~~~ 71 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKP-------V-EAHCAQ-LGERFRFFHVEPLPGAKA 71 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHH-------H-HHHHHH-hCCcEEEEEcCCCCCCch
Confidence 5999999984 467777655 688999999987221111000 0 000000 01000011 1232 5
Q ss_pred cccceeEEEEe--ceEEEeecCCCcccCCCCCccchhh
Q 024882 86 ACRCFGYMVSK--KKYIFTIDDDCFVAKDPSGKEINAL 121 (261)
Q Consensus 86 arRN~GYL~A~--a~~I~~~DDDn~P~~~~~g~~~d~~ 121 (261)
+++|.|.-.|. ++||+++|+|+.+.++++.+.+..+
T Consensus 72 ~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~ 109 (236)
T cd06435 72 GALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIF 109 (236)
T ss_pred HHHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHh
Confidence 67899988875 6999999999999988655444443
No 30
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=97.65 E-value=3e-05 Score=75.23 Aligned_cols=88 Identities=18% Similarity=0.382 Sum_probs=60.2
Q ss_pred CeEEEEecccCh----hHHHhhhcc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhC--CCcccc----ccC
Q 024882 15 ELDIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG--PKASCI----SFK 83 (261)
Q Consensus 15 ~v~IVVtTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~--~~~~~l----P~~ 83 (261)
.++|+||++|+. +||+++.+. ++++++|||.|+...++... .+++.. .....+ ..+
T Consensus 76 ~vsViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~-------------~~~~~~~~~~v~vv~~~~n~G 142 (444)
T PRK14583 76 LVSILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQV-------------LDALLAEDPRLRVIHLAHNQG 142 (444)
T ss_pred cEEEEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHH-------------HHHHHHhCCCEEEEEeCCCCC
Confidence 499999999997 688887765 88999999999833222111 111111 111111 123
Q ss_pred cccccceeEEEEeceEEEeecCCCcccCCCCC
Q 024882 84 DSACRCFGYMVSKKKYIFTIDDDCFVAKDPSG 115 (261)
Q Consensus 84 s~arRN~GYL~A~a~~I~~~DDDn~P~~~~~g 115 (261)
...+.|.|...|.+|||+.+|.|+.+.++.+.
T Consensus 143 ka~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~ 174 (444)
T PRK14583 143 KAIALRMGAAAARSEYLVCIDGDALLDKNAVP 174 (444)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCCcCHHHHH
Confidence 45667889888899999999999999887533
No 31
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=97.63 E-value=5.3e-06 Score=69.72 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=53.6
Q ss_pred EEEecccCh----hHHHhhhcc-c--CCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccccCcccccce
Q 024882 18 IVIPTIRNL----DFLEMWRPF-F--EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSACRCF 90 (261)
Q Consensus 18 IVVtTi~~p----~~L~~~~~~-~--~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~lP~~s~arRN~ 90 (261)
||||++++. +||+++.+. . ..+++|||.|...-++.+....+...+. .- ...-..+-..+.|.
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~~~~~~--------~~--~~~~~~gk~~aln~ 70 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAAGATVL--------ER--HDPERRGKGYALDF 70 (183)
T ss_pred CEEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHcCCeEE--------Ee--CCCCCCCHHHHHHH
Confidence 799999986 688888764 4 5689999998833222221111100000 00 00001234456777
Q ss_pred eEEEE-----eceEEEeecCCCcccCCCCC
Q 024882 91 GYMVS-----KKKYIFTIDDDCFVAKDPSG 115 (261)
Q Consensus 91 GYL~A-----~a~~I~~~DDDn~P~~~~~g 115 (261)
|+..| .+++|+++|.|+.+.++++.
T Consensus 71 g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~ 100 (183)
T cd06438 71 GFRHLLNLADDPDAVVVFDADNLVDPNALE 100 (183)
T ss_pred HHHHHHhcCCCCCEEEEEcCCCCCChhHHH
Confidence 87655 38999999999999988633
No 32
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=97.62 E-value=2.4e-05 Score=74.09 Aligned_cols=97 Identities=9% Similarity=0.071 Sum_probs=57.7
Q ss_pred CCeEEEEecccCh----hHHHhhhcc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCcccc----cc--
Q 024882 14 DELDIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCI----SF-- 82 (261)
Q Consensus 14 ~~v~IVVtTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~l----P~-- 82 (261)
-.++||||++++. +||+++.++ ++.+|+|||.|...-.+...-+ +-+++.......++ |.
T Consensus 41 p~VSViiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~---------~~~~~~p~~~i~~v~~~~~~G~ 111 (373)
T TIGR03472 41 PPVSVLKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVR---------RLRADFPDADIDLVIDARRHGP 111 (373)
T ss_pred CCeEEEEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHH---------HHHHhCCCCceEEEECCCCCCC
Confidence 3599999999975 799998776 8899999988762221111110 00111111111111 11
Q ss_pred --CcccccceeEEEEeceEEEeecCCCcccCCCCCccchh
Q 024882 83 --KDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINA 120 (261)
Q Consensus 83 --~s~arRN~GYL~A~a~~I~~~DDDn~P~~~~~g~~~d~ 120 (261)
|..++.| +.-.|++|+|+++|+|+.+.++++.+....
T Consensus 112 ~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~ 150 (373)
T TIGR03472 112 NRKVSNLIN-MLPHARHDILVIADSDISVGPDYLRQVVAP 150 (373)
T ss_pred ChHHHHHHH-HHHhccCCEEEEECCCCCcChhHHHHHHHH
Confidence 1223333 345567999999999999998875444433
No 33
>PRK11204 N-glycosyltransferase; Provisional
Probab=97.62 E-value=1.4e-05 Score=76.03 Aligned_cols=95 Identities=17% Similarity=0.366 Sum_probs=63.6
Q ss_pred CeEEEEecccCh----hHHHhhhcc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhC--CCccccc----cC
Q 024882 15 ELDIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG--PKASCIS----FK 83 (261)
Q Consensus 15 ~v~IVVtTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~--~~~~~lP----~~ 83 (261)
.++||||++++. +|++++.+. .+.+++|||.|....++...- +++.. .....+. -+
T Consensus 55 ~vsViIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l-------------~~~~~~~~~v~~i~~~~n~G 121 (420)
T PRK11204 55 GVSILVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEIL-------------DRLAAQIPRLRVIHLAENQG 121 (420)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHH-------------HHHHHhCCcEEEEEcCCCCC
Confidence 499999999987 578777765 789999999998332222111 11110 0011111 23
Q ss_pred cccccceeEEEEeceEEEeecCCCcccCCCCCccchhhh
Q 024882 84 DSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALE 122 (261)
Q Consensus 84 s~arRN~GYL~A~a~~I~~~DDDn~P~~~~~g~~~d~~~ 122 (261)
...+.|.|.-.|.+|||+++|+|+.+.++++.+.++.++
T Consensus 122 ka~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~ 160 (420)
T PRK11204 122 KANALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFL 160 (420)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHH
Confidence 456678888888999999999999999886555555543
No 34
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=97.58 E-value=1.6e-05 Score=65.64 Aligned_cols=89 Identities=19% Similarity=0.298 Sum_probs=58.1
Q ss_pred EEEecccCh----hHHHhhhccc---CCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCC--CccccccCccccc
Q 024882 18 IVIPTIRNL----DFLEMWRPFF---EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP--KASCISFKDSACR 88 (261)
Q Consensus 18 IVVtTi~~p----~~L~~~~~~~---~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~--~~~~lP~~s~arR 88 (261)
||||+++++ +||+++.+.. ..+++|||.|.....+...- . ...++.... ...--..+..+++
T Consensus 1 iii~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~--------~-~~~~~~~~~~~~~~~~n~G~~~a~ 71 (185)
T cd04179 1 VVIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIA--------R-ELAARVPRVRVIRLSRNFGKGAAV 71 (185)
T ss_pred CeecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHH--------H-HHHHhCCCeEEEEccCCCCccHHH
Confidence 689999987 5888888753 58999999998322221111 0 001111000 0011124568889
Q ss_pred ceeEEEEeceEEEeecCCCcccCCCCC
Q 024882 89 CFGYMVSKKKYIFTIDDDCFVAKDPSG 115 (261)
Q Consensus 89 N~GYL~A~a~~I~~~DDDn~P~~~~~g 115 (261)
|.|...|.++||+++|+|..+.++|+.
T Consensus 72 n~g~~~a~gd~i~~lD~D~~~~~~~l~ 98 (185)
T cd04179 72 RAGFKAARGDIVVTMDADLQHPPEDIP 98 (185)
T ss_pred HHHHHHhcCCEEEEEeCCCCCCHHHHH
Confidence 999999999999999999998877633
No 35
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.49 E-value=4.9e-05 Score=64.14 Aligned_cols=90 Identities=16% Similarity=0.205 Sum_probs=55.2
Q ss_pred EEEecccCh----hHHHhhhcc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCC-ccc--c--ccCcccc
Q 024882 18 IVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPK-ASC--I--SFKDSAC 87 (261)
Q Consensus 18 IVVtTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~-~~~--l--P~~s~ar 87 (261)
|||||++++ +||+++.+. .+.+++|||.|. .+.. +.+..+++.... ... . ..+...+
T Consensus 1 viI~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~------s~d~-------t~~~~~~~~~~~~i~~~~~~~n~g~~~~ 67 (202)
T cd04185 1 AVVVTYNRLDLLKECLDALLAQTRPPDHIIVIDNA------STDG-------TAEWLTSLGDLDNIVYLRLPENLGGAGG 67 (202)
T ss_pred CEEEeeCCHHHHHHHHHHHHhccCCCceEEEEECC------CCcc-------hHHHHHHhcCCCceEEEECccccchhhH
Confidence 689999987 578887765 678899999987 2221 111122211110 011 1 1234445
Q ss_pred cceeEEEE---eceEEEeecCCCcccCCCCCccchh
Q 024882 88 RCFGYMVS---KKKYIFTIDDDCFVAKDPSGKEINA 120 (261)
Q Consensus 88 RN~GYL~A---~a~~I~~~DDDn~P~~~~~g~~~d~ 120 (261)
+|.|...| .++|++++|+|+.+.++++.+.++.
T Consensus 68 ~n~~~~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~ 103 (202)
T cd04185 68 FYEGVRRAYELGYDWIWLMDDDAIPDPDALEKLLAY 103 (202)
T ss_pred HHHHHHHHhccCCCEEEEeCCCCCcChHHHHHHHHH
Confidence 66666554 4899999999999998864443333
No 36
>PRK10063 putative glycosyl transferase; Provisional
Probab=97.45 E-value=0.00012 Score=65.80 Aligned_cols=89 Identities=13% Similarity=0.115 Sum_probs=56.0
Q ss_pred CeEEEEecccCh----hHHHhhhc---c-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccccCccc
Q 024882 15 ELDIVIPTIRNL----DFLEMWRP---F-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSA 86 (261)
Q Consensus 15 ~v~IVVtTi~~p----~~L~~~~~---~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~lP~~s~a 86 (261)
.++|||||+++. +||+++.+ . .+.+|+|||.|+..-.+......+. ...+-++.. .-..+.++
T Consensus 2 ~vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~-----~~~~i~~i~----~~~~G~~~ 72 (248)
T PRK10063 2 LLSVITVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLN-----GIFNLRFVS----EPDNGIYD 72 (248)
T ss_pred eEEEEEEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhc-----ccCCEEEEE----CCCCCHHH
Confidence 489999999986 57777753 1 4679999999872222211111110 000001111 11135778
Q ss_pred ccceeEEEEeceEEEeecCCCcccCC
Q 024882 87 CRCFGYMVSKKKYIFTIDDDCFVAKD 112 (261)
Q Consensus 87 rRN~GYL~A~a~~I~~~DDDn~P~~~ 112 (261)
++|.|.-.|.++||+++|.|...+++
T Consensus 73 A~N~Gi~~a~g~~v~~ld~DD~~~~~ 98 (248)
T PRK10063 73 AMNKGIAMAQGRFALFLNSGDIFHQD 98 (248)
T ss_pred HHHHHHHHcCCCEEEEEeCCcccCcC
Confidence 99999999999999999977776665
No 37
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=97.44 E-value=6.2e-05 Score=73.05 Aligned_cols=100 Identities=18% Similarity=0.265 Sum_probs=61.9
Q ss_pred CCeEEEEecccCh----hHHHhhhcc-cCC--eEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCcccccc--Cc
Q 024882 14 DELDIVIPTIRNL----DFLEMWRPF-FEP--YHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISF--KD 84 (261)
Q Consensus 14 ~~v~IVVtTi~~p----~~L~~~~~~-~~~--~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~lP~--~s 84 (261)
-.++||||++++. +||+++.+. ++. +++|||.|....++... +. +.+++...-....++- +-
T Consensus 49 P~vsVIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~i--------l~-~~~~~~~~v~v~~~~~~~Gk 119 (439)
T TIGR03111 49 PDITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQV--------FC-RAQNEFPGLSLRYMNSDQGK 119 (439)
T ss_pred CCEEEEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHH--------HH-HHHHhCCCeEEEEeCCCCCH
Confidence 3599999999987 577777664 544 79999998722111110 00 0011111111111222 23
Q ss_pred ccccceeEEEEeceEEEeecCCCcccCCCCCccchhhh
Q 024882 85 SACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALE 122 (261)
Q Consensus 85 ~arRN~GYL~A~a~~I~~~DDDn~P~~~~~g~~~d~~~ 122 (261)
..+.|.|.-.|.+|||+++|.|+.|.++++.+.+..+.
T Consensus 120 a~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~ 157 (439)
T TIGR03111 120 AKALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFE 157 (439)
T ss_pred HHHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHH
Confidence 55678898888999999999999998886555555544
No 38
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=97.41 E-value=5.5e-05 Score=64.66 Aligned_cols=85 Identities=19% Similarity=0.238 Sum_probs=57.2
Q ss_pred EEEecccCh----hHHHhhhcc-c----CCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCC---ccc----cc
Q 024882 18 IVIPTIRNL----DFLEMWRPF-F----EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPK---ASC----IS 81 (261)
Q Consensus 18 IVVtTi~~p----~~L~~~~~~-~----~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~---~~~----lP 81 (261)
||||++++. +||+++.+. . ..+++|||.|.....+. +-.+++.... ..+ -.
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~-------------~~~~~~~~~~~~~i~~i~~~~n 67 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTA-------------EVARKLARKNPALIRVLTLPKN 67 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchH-------------HHHHHHHHhCCCcEEEEEcccC
Confidence 799999976 588888764 3 68999999998221111 1111111100 011 12
Q ss_pred cCcccccceeEEEEeceEEEeecCCCcccCCCCC
Q 024882 82 FKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSG 115 (261)
Q Consensus 82 ~~s~arRN~GYL~A~a~~I~~~DDDn~P~~~~~g 115 (261)
.+..++.|.|+..|.++||+++|.|....++++.
T Consensus 68 ~G~~~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~ 101 (211)
T cd04188 68 RGKGGAVRAGMLAARGDYILFADADLATPFEELE 101 (211)
T ss_pred CCcHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHH
Confidence 4677888999999999999999999998877533
No 39
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=97.34 E-value=2.2e-05 Score=65.30 Aligned_cols=89 Identities=18% Similarity=0.295 Sum_probs=56.4
Q ss_pred EEEecccCh----hHHHhhhcc----cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCC--Cccc----cccC
Q 024882 18 IVIPTIRNL----DFLEMWRPF----FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP--KASC----ISFK 83 (261)
Q Consensus 18 IVVtTi~~p----~~L~~~~~~----~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~--~~~~----lP~~ 83 (261)
|||||+++. ++|+.+.+. ...+++|||.|....++.... +.+... .... -..+
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~-------------~~~~~~~~~i~~i~~~~n~G 67 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEIL-------------RELAARDPRVKVIRLSRNFG 67 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHH-------------HHHHhhCCCEEEEEecCCCC
Confidence 689999987 466666542 467999999988332221111 111100 0011 1245
Q ss_pred cccccceeEEEEeceEEEeecCCCcccCCCCCccch
Q 024882 84 DSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEIN 119 (261)
Q Consensus 84 s~arRN~GYL~A~a~~I~~~DDDn~P~~~~~g~~~d 119 (261)
..++.|.|...|.++||+++|+|+.+.++|+.+.+.
T Consensus 68 ~~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~ 103 (181)
T cd04187 68 QQAALLAGLDHARGDAVITMDADLQDPPELIPEMLA 103 (181)
T ss_pred cHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 667778888888999999999999988776444333
No 40
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=97.32 E-value=0.00013 Score=64.04 Aligned_cols=84 Identities=18% Similarity=0.187 Sum_probs=54.3
Q ss_pred CeEEEEecccCh----hHHHhhhcccCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccccCcccccce
Q 024882 15 ELDIVIPTIRNL----DFLEMWRPFFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSACRCF 90 (261)
Q Consensus 15 ~v~IVVtTi~~p----~~L~~~~~~~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~lP~~s~arRN~ 90 (261)
.++|||+|+++. +||+++..+ ..++|||.|.....+.... +.........-..+..++||.
T Consensus 1 ~isvii~~~Ne~~~l~~~l~sl~~~--~~eiivvD~gStD~t~~i~-------------~~~~~~v~~~~~~g~~~~~n~ 65 (229)
T cd02511 1 TLSVVIITKNEERNIERCLESVKWA--VDEIIVVDSGSTDRTVEIA-------------KEYGAKVYQRWWDGFGAQRNF 65 (229)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHhcc--cCEEEEEeCCCCccHHHHH-------------HHcCCEEEECCCCChHHHHHH
Confidence 379999999987 466666532 1499999988222111111 011001111111345688999
Q ss_pred eEEEEeceEEEeecCCCcccCCC
Q 024882 91 GYMVSKKKYIFTIDDDCFVAKDP 113 (261)
Q Consensus 91 GYL~A~a~~I~~~DDDn~P~~~~ 113 (261)
|...|.++||+++|.|..+.+++
T Consensus 66 ~~~~a~~d~vl~lDaD~~~~~~~ 88 (229)
T cd02511 66 ALELATNDWVLSLDADERLTPEL 88 (229)
T ss_pred HHHhCCCCEEEEEeCCcCcCHHH
Confidence 99999999999999999988875
No 41
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=97.20 E-value=7.8e-05 Score=69.84 Aligned_cols=100 Identities=11% Similarity=0.213 Sum_probs=61.8
Q ss_pred CCCCeEEEEecccCh----hHHHhhhc----ccCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCcc----c
Q 024882 12 LKDELDIVIPTIRNL----DFLEMWRP----FFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKAS----C 79 (261)
Q Consensus 12 ~~~~v~IVVtTi~~p----~~L~~~~~----~~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~----~ 79 (261)
...+++||||++++. ++++++.+ ....+|+|||.|+..-.+...- ... .++ ...... .
T Consensus 4 ~~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il--------~~~-~~~-~~~~v~~i~~~ 73 (325)
T PRK10714 4 PIKKVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEML--------VEA-AQA-PDSHIVAILLN 73 (325)
T ss_pred CCCeEEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHH--------HHH-Hhh-cCCcEEEEEeC
Confidence 345699999999986 46666643 2457999999998222221111 000 000 011000 1
Q ss_pred cccCcccccceeEEEEeceEEEeecCCCcccCCCCCccchhh
Q 024882 80 ISFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINAL 121 (261)
Q Consensus 80 lP~~s~arRN~GYL~A~a~~I~~~DDDn~P~~~~~g~~~d~~ 121 (261)
-.++..++.|.|+..|.+++|+++|.|....++++-+.++..
T Consensus 74 ~n~G~~~A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l~~~~ 115 (325)
T PRK10714 74 RNYGQHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKA 115 (325)
T ss_pred CCCCHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 124566788889999999999999999998877544444443
No 42
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=97.19 E-value=7.4e-05 Score=70.31 Aligned_cols=88 Identities=27% Similarity=0.398 Sum_probs=57.5
Q ss_pred CCCeEEEEecccCh----hHHHhhhccc---------CCeEEEEEecCCCCcccccCCCccccccChhhhhhhhC-----
Q 024882 13 KDELDIVIPTIRNL----DFLEMWRPFF---------EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG----- 74 (261)
Q Consensus 13 ~~~v~IVVtTi~~p----~~L~~~~~~~---------~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~----- 74 (261)
.-+++||||++++. ++|+++.+.+ ..+++|||.|+..-.+... .+++..
T Consensus 69 ~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i-------------~~~~~~~~~~~ 135 (333)
T PTZ00260 69 DVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKV-------------AKDFWRQNINP 135 (333)
T ss_pred CeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHH-------------HHHHHHhcCCC
Confidence 44599999999986 4666665422 2699999999832221111 111110
Q ss_pred -CCcccc----ccCcccccceeEEEEeceEEEeecCCCcccCCC
Q 024882 75 -PKASCI----SFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDP 113 (261)
Q Consensus 75 -~~~~~l----P~~s~arRN~GYL~A~a~~I~~~DDDn~P~~~~ 113 (261)
....++ ..+..++.|.|+..|.++||+++|.|....+++
T Consensus 136 ~~~i~vi~~~~N~G~~~A~~~Gi~~a~gd~I~~~DaD~~~~~~~ 179 (333)
T PTZ00260 136 NIDIRLLSLLRNKGKGGAVRIGMLASRGKYILMVDADGATDIDD 179 (333)
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHccCCEEEEEeCCCCCCHHH
Confidence 001111 235677788999999999999999999987764
No 43
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.16 E-value=0.00062 Score=64.34 Aligned_cols=90 Identities=20% Similarity=0.328 Sum_probs=56.5
Q ss_pred CCeEEEEecccCh-----hHHHhhhcc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCcccc-c--cC-
Q 024882 14 DELDIVIPTIRNL-----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCI-S--FK- 83 (261)
Q Consensus 14 ~~v~IVVtTi~~p-----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~l-P--~~- 83 (261)
-.++|+||+++++ ++++++.+. +++++++||.|....++.+.-+. ..++. ......+ + .+
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~---------~~~~~-~~~~~~~~~~~~~~ 123 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEE---------LGAEY-GPNFRVIYPEKKNG 123 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHH---------HHhhc-CcceEEEeccccCc
Confidence 6899999999987 366666666 88999999999622222222110 00001 0011111 1 11
Q ss_pred -cccccceeEEEEeceEEEeecCCCcccCCC
Q 024882 84 -DSACRCFGYMVSKKKYIFTIDDDCFVAKDP 113 (261)
Q Consensus 84 -s~arRN~GYL~A~a~~I~~~DDDn~P~~~~ 113 (261)
-...=|-|+-.|.+|+|+.+|-|..|.+++
T Consensus 124 gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~ 154 (439)
T COG1215 124 GKAGALNNGLKRAKGDVVVILDADTVPEPDA 154 (439)
T ss_pred cchHHHHHHHhhcCCCEEEEEcCCCCCChhH
Confidence 234445567777899999999999999985
No 44
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=97.16 E-value=0.00013 Score=67.92 Aligned_cols=94 Identities=14% Similarity=0.216 Sum_probs=55.5
Q ss_pred CCCeEEEEecccCh----hHHHhhhccc---CCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCcccccc--C
Q 024882 13 KDELDIVIPTIRNL----DFLEMWRPFF---EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISF--K 83 (261)
Q Consensus 13 ~~~v~IVVtTi~~p----~~L~~~~~~~---~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~lP~--~ 83 (261)
.-.++||||++++. +||+++.+.. ..+++|||.|...-.+......+...++.. ...+. ..+. +
T Consensus 30 ~~~vSVVIPayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~~~~v~~~---~~~~~----~~~~n~G 102 (306)
T PRK13915 30 GRTVSVVLPALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAAGARVVSR---EEILP----ELPPRPG 102 (306)
T ss_pred CCCEEEEEecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHhcchhhcc---hhhhh----ccccCCC
Confidence 44699999999986 5777777542 357999999983322222211111111100 00000 0011 2
Q ss_pred cccccceeEEEEeceEEEeecCCCc-ccCCC
Q 024882 84 DSACRCFGYMVSKKKYIFTIDDDCF-VAKDP 113 (261)
Q Consensus 84 s~arRN~GYL~A~a~~I~~~DDDn~-P~~~~ 113 (261)
..++.|.|+..|.++||+++|.|+. +.+++
T Consensus 103 kg~A~~~g~~~a~gd~vv~lDaD~~~~~p~~ 133 (306)
T PRK13915 103 KGEALWRSLAATTGDIVVFVDADLINFDPMF 133 (306)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCccccCCHHH
Confidence 3345677888888999999999997 55655
No 45
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=97.10 E-value=0.00011 Score=63.38 Aligned_cols=89 Identities=11% Similarity=0.078 Sum_probs=51.9
Q ss_pred EEEecccCh-hHHHhhhcc--cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccccCcccccceeEEE
Q 024882 18 IVIPTIRNL-DFLEMWRPF--FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMV 94 (261)
Q Consensus 18 IVVtTi~~p-~~L~~~~~~--~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~lP~~s~arRN~GYL~ 94 (261)
+||||+++. +.|++..+. .+.+++|||.|....++...- .+ .....+++-... ..+..+++|.|+..
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~q~~~iivvDn~s~~~~~~~~------~~-~~~~i~~i~~~~---n~G~~~a~N~g~~~ 70 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAEQVDKVVVVDNSSGNDIELRL------RL-NSEKIELIHLGE---NLGIAKALNIGIKA 70 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhccCCEEEEEeCCCCccHHHHh------hc-cCCcEEEEECCC---ceehHHhhhHHHHH
Confidence 589999987 544444332 236899999887222111110 00 000000110001 14467888888888
Q ss_pred Eec---eEEEeecCCCcccCCCCCc
Q 024882 95 SKK---KYIFTIDDDCFVAKDPSGK 116 (261)
Q Consensus 95 A~a---~~I~~~DDDn~P~~~~~g~ 116 (261)
|.+ +||+++|+|+.+.++|+.+
T Consensus 71 a~~~~~d~v~~lD~D~~~~~~~l~~ 95 (237)
T cd02526 71 ALENGADYVLLFDQDSVPPPDMVEK 95 (237)
T ss_pred HHhCCCCEEEEECCCCCcCHhHHHH
Confidence 865 9999999999999886443
No 46
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=96.84 E-value=0.00027 Score=74.50 Aligned_cols=96 Identities=10% Similarity=0.148 Sum_probs=56.8
Q ss_pred CeEEEEecccCh-h----HHHhhhcc-c--CCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccccCccc
Q 024882 15 ELDIVIPTIRNL-D----FLEMWRPF-F--EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSA 86 (261)
Q Consensus 15 ~v~IVVtTi~~p-~----~L~~~~~~-~--~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~lP~~s~a 86 (261)
.++|+|||+|++ + ++.+.... + ++++++||.|+...++.+..+.... +++....+ .-+-.+
T Consensus 261 ~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~~~v---------~yI~R~~n--~~gKAG 329 (852)
T PRK11498 261 TVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQEVGV---------KYIARPTH--EHAKAG 329 (852)
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHHCCc---------EEEEeCCC--CcchHH
Confidence 599999999998 4 34443332 3 4699999999832222111110000 01100000 001234
Q ss_pred ccceeEEEEeceEEEeecCCCcccCCCCCccchhh
Q 024882 87 CRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINAL 121 (261)
Q Consensus 87 rRN~GYL~A~a~~I~~~DDDn~P~~~~~g~~~d~~ 121 (261)
..|.|.-.|.+|||+++|.|+.|.++++.+.+..+
T Consensus 330 nLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f 364 (852)
T PRK11498 330 NINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWF 364 (852)
T ss_pred HHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHH
Confidence 45788888899999999999999988655444443
No 47
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=96.83 E-value=0.00044 Score=58.82 Aligned_cols=84 Identities=12% Similarity=0.173 Sum_probs=52.8
Q ss_pred EEEecccCh----hHHHhhhcccCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCcccc-------ccCccc
Q 024882 18 IVIPTIRNL----DFLEMWRPFFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCI-------SFKDSA 86 (261)
Q Consensus 18 IVVtTi~~p----~~L~~~~~~~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~l-------P~~s~a 86 (261)
||||++++. +||+++....+.+++|||.|.....+...-. + +.......++ ..+...
T Consensus 1 ViIp~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~------~------~~~~~~v~~i~~~~~~~~~Gk~~ 68 (191)
T cd06436 1 VLVPCLNEEAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVR------L------AITDSRVHLLRRHLPNARTGKGD 68 (191)
T ss_pred CEEeccccHHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHh------h------eecCCcEEEEeccCCcCCCCHHH
Confidence 799999997 5777777645789999999983322222110 0 0000111111 123466
Q ss_pred ccceeEEEEe-----------ceEEEeecCCCcccCCC
Q 024882 87 CRCFGYMVSK-----------KKYIFTIDDDCFVAKDP 113 (261)
Q Consensus 87 rRN~GYL~A~-----------a~~I~~~DDDn~P~~~~ 113 (261)
+.|.|+-.|. +++|+++|.|+.+.+++
T Consensus 69 aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~ 106 (191)
T cd06436 69 ALNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNA 106 (191)
T ss_pred HHHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhH
Confidence 7788876653 37999999999999885
No 48
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=96.83 E-value=0.00044 Score=61.39 Aligned_cols=76 Identities=17% Similarity=0.249 Sum_probs=53.0
Q ss_pred EEEecccCh-----hHHHhhhcc-cC----------CeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccc
Q 024882 18 IVIPTIRNL-----DFLEMWRPF-FE----------PYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCIS 81 (261)
Q Consensus 18 IVVtTi~~p-----~~L~~~~~~-~~----------~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~lP 81 (261)
||||.+|+. ++|+++... ++ .++||||.|+ -+- +++ +
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dg------s~d------------~~~--g------- 53 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDG------AIK------------KNR--G------- 53 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCC------ccc------------ccC--c-------
Confidence 789999994 577777765 66 7999999998 221 000 0
Q ss_pred cCcc------cccceeEEEEeceEEEeecCCCcccCCCCCccchhh
Q 024882 82 FKDS------ACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINAL 121 (261)
Q Consensus 82 ~~s~------arRN~GYL~A~a~~I~~~DDDn~P~~~~~g~~~d~~ 121 (261)
|.+ ...|-|+..|.+|||+++|.|+.+.++++.+.+..+
T Consensus 54 -k~~~~~~~~~~~~~~~~~a~~e~i~~~DaD~~~~~~~l~~l~~~~ 98 (244)
T cd04190 54 -KRDSQLWFFNYFCRVLFPDDPEFILLVDADTKFDPDSIVQLYKAM 98 (244)
T ss_pred -chHHHHHHHHHHHHHhhcCCCCEEEEECCCCcCCHhHHHHHHHHH
Confidence 111 233566777889999999999999998655444444
No 49
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=96.75 E-value=0.00033 Score=63.95 Aligned_cols=84 Identities=23% Similarity=0.438 Sum_probs=55.9
Q ss_pred EEEEecccCh---h-------HHHhhhcc--cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhh---------CC
Q 024882 17 DIVIPTIRNL---D-------FLEMWRPF--FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRIL---------GP 75 (261)
Q Consensus 17 ~IVVtTi~~p---~-------~L~~~~~~--~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l---------~~ 75 (261)
+||||...+. . ||.++.++ -+++++|||.|....+.. +..+++. ..
T Consensus 1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s~~~~~-------------~~l~~~~~~~~~~~~i~~ 67 (281)
T PF10111_consen 1 SIIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGSSDEFD-------------EELKKLCEKNGFIRYIRH 67 (281)
T ss_pred CEEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCchhHH-------------HHHHHHHhccCceEEEEc
Confidence 5899997754 1 35555542 578899999887322210 1111111 11
Q ss_pred CccccccCcccccceeEEEEeceEEEeecCCCcccCCC
Q 024882 76 KASCISFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDP 113 (261)
Q Consensus 76 ~~~~lP~~s~arRN~GYL~A~a~~I~~~DDDn~P~~~~ 113 (261)
...--+|+-+.+||+|-..|.+++|+++|.|+.|.++.
T Consensus 68 ~~~~~~f~~a~arN~g~~~A~~d~l~flD~D~i~~~~~ 105 (281)
T PF10111_consen 68 EDNGEPFSRAKARNIGAKYARGDYLIFLDADCIPSPDF 105 (281)
T ss_pred CCCCCCcCHHHHHHHHHHHcCCCEEEEEcCCeeeCHHH
Confidence 11223578899999999999999999999999998874
No 50
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=96.60 E-value=0.0012 Score=68.32 Aligned_cols=107 Identities=15% Similarity=0.227 Sum_probs=62.8
Q ss_pred CeEEEEecccCh-h----HHHhhhcc-cC--CeEEEEEecCCCCcccccCCCcccccc-ChhhhhhhhCC-Ccccc--cc
Q 024882 15 ELDIVIPTIRNL-D----FLEMWRPF-FE--PYHLIIVQDGDPSKTIKVPDGFDYELY-NRNDINRILGP-KASCI--SF 82 (261)
Q Consensus 15 ~v~IVVtTi~~p-~----~L~~~~~~-~~--~~~lVVV~D~~~~~~~ktp~~~~~~~~-~~~dq~~~l~~-~~~~l--P~ 82 (261)
.++|||||+|++ + ++++..+. ++ .++++||.|+..-.+.+.|+.+..+.- ..++.+++-.. ....+ |-
T Consensus 132 ~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~yi~r~~ 211 (713)
T TIGR03030 132 TVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNYITRPR 211 (713)
T ss_pred eeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcEEEECCC
Confidence 499999999987 3 45555443 44 799999999854444444433322110 01111111100 11111 11
Q ss_pred C---cccccceeEEEEeceEEEeecCCCcccCCCCCccchhh
Q 024882 83 K---DSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINAL 121 (261)
Q Consensus 83 ~---s~arRN~GYL~A~a~~I~~~DDDn~P~~~~~g~~~d~~ 121 (261)
+ .....|.|.-.|.+|||+++|.|+.|.++++.+.+..+
T Consensus 212 n~~~KAgnLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f 253 (713)
T TIGR03030 212 NVHAKAGNINNALKHTDGELILIFDADHVPTRDFLQRTVGWF 253 (713)
T ss_pred CCCCChHHHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHH
Confidence 2 12335788888889999999999999988654444444
No 51
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=95.84 E-value=0.012 Score=45.03 Aligned_cols=88 Identities=19% Similarity=0.269 Sum_probs=52.6
Q ss_pred EEEecccCh----hHHHhhhcc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhh-hCCCccccccCccccccee
Q 024882 18 IVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRI-LGPKASCISFKDSACRCFG 91 (261)
Q Consensus 18 IVVtTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~-l~~~~~~lP~~s~arRN~G 91 (261)
||||+.+++ .+|+++.+. ...+++++|.|....+....- .....+.. .......-+.+....+|.|
T Consensus 1 iii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 72 (156)
T cd00761 1 VIIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEIL--------EEYAKKDPRVIRVINEENQGLAAARNAG 72 (156)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHH--------HHHHhcCCCeEEEEecCCCChHHHHHHH
Confidence 689999987 466676654 468999999998332222111 00000000 0001112224455566777
Q ss_pred EEEEeceEEEeecCCCcccCCC
Q 024882 92 YMVSKKKYIFTIDDDCFVAKDP 113 (261)
Q Consensus 92 YL~A~a~~I~~~DDDn~P~~~~ 113 (261)
...+..++++++|+|+.+.+++
T Consensus 73 ~~~~~~d~v~~~d~D~~~~~~~ 94 (156)
T cd00761 73 LKAARGEYILFLDADDLLLPDW 94 (156)
T ss_pred HHHhcCCEEEEECCCCccCccH
Confidence 6677799999999999987763
No 52
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=95.35 E-value=0.022 Score=54.34 Aligned_cols=35 Identities=17% Similarity=0.376 Sum_probs=27.5
Q ss_pred eEEEEecccCh----hHHHhhhcc---cCCeEEEEEecCCCC
Q 024882 16 LDIVIPTIRNL----DFLEMWRPF---FEPYHLIIVQDGDPS 50 (261)
Q Consensus 16 v~IVVtTi~~p----~~L~~~~~~---~~~~~lVVV~D~~~~ 50 (261)
+-|||.++++| ++|+++.+. ...++|+|..|+...
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~ 43 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYE 43 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCch
Confidence 46899999999 477777752 458899999999543
No 53
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=95.11 E-value=0.0084 Score=56.21 Aligned_cols=89 Identities=19% Similarity=0.256 Sum_probs=54.6
Q ss_pred CeEEEEecccCh--------hHHHhhhcc-cC----CeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccc
Q 024882 15 ELDIVIPTIRNL--------DFLEMWRPF-FE----PYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCIS 81 (261)
Q Consensus 15 ~v~IVVtTi~~p--------~~L~~~~~~-~~----~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~lP 81 (261)
.++||||+++++ +|+.-+.+- .. +|++|||.|+.-..+.+...++. .-...|+-+. ....+-.+
T Consensus 68 ~lsVIVpaynE~~ri~~mldeav~~le~ry~~~~~F~~eiiVvddgs~d~T~~~a~k~s--~K~~~d~irV-~~l~~nrg 144 (323)
T KOG2977|consen 68 YLSVIVPAYNEEGRIGAMLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDSTVEVALKFS--RKLGDDNIRV-IKLKKNRG 144 (323)
T ss_pred eeEEEEecCCcccchHHHHHHHHHHHHHHhccCCCCceeEEEeCCCCchhHHHHHHHHH--HHcCcceEEE-eehhccCC
Confidence 689999999987 344444432 33 79999999994333333332221 0011111111 11233456
Q ss_pred cCcccccceeEEEEeceEEEeecCCCc
Q 024882 82 FKDSACRCFGYMVSKKKYIFTIDDDCF 108 (261)
Q Consensus 82 ~~s~arRN~GYL~A~a~~I~~~DDDn~ 108 (261)
.++..| -|.|.+++++|.+.|-|.-
T Consensus 145 KGgAvR--~g~l~~rG~~ilfadAdGa 169 (323)
T KOG2977|consen 145 KGGAVR--KGMLSSRGQKILFADADGA 169 (323)
T ss_pred CCccee--hhhHhccCceEEEEcCCCC
Confidence 677777 6899999999999998864
No 54
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=95.01 E-value=0.0036 Score=56.22 Aligned_cols=40 Identities=13% Similarity=0.051 Sum_probs=31.1
Q ss_pred CcccccceeEEEE---eceEEEeecCCCcccCCCCCccchhhh
Q 024882 83 KDSACRCFGYMVS---KKKYIFTIDDDCFVAKDPSGKEINALE 122 (261)
Q Consensus 83 ~s~arRN~GYL~A---~a~~I~~~DDDn~P~~~~~g~~~d~~~ 122 (261)
+..++.|.|.-+| .++||+++|||+.|.++++.+.++.++
T Consensus 57 G~a~a~N~Gi~~a~~~~~d~i~~lD~D~~~~~~~l~~l~~~~~ 99 (281)
T TIGR01556 57 GIAGAQNQGLDASFRRGVQGVLLLDQDSRPGNAFLAAQWKLLS 99 (281)
T ss_pred chHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 5678899997776 489999999999999876555554444
No 55
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=94.82 E-value=0.0092 Score=54.90 Aligned_cols=98 Identities=16% Similarity=0.216 Sum_probs=55.1
Q ss_pred CCCeEEEEecccCh----hHHHhhhcc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccc----cC
Q 024882 13 KDELDIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCIS----FK 83 (261)
Q Consensus 13 ~~~v~IVVtTi~~p----~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~lP----~~ 83 (261)
+-++++||+|++++ +||+++++. .+.-++|+|.+. .+.. +.+..+.....-..+|. .+
T Consensus 2 ~~~i~~iiv~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~------s~d~-------~~~~~~~~~~~~v~~i~~~~NlG 68 (305)
T COG1216 2 MPKISIIIVTYNRGEDLVECLASLAAQTYPDDVIVVVDNG------STDG-------SLEALKARFFPNVRLIENGENLG 68 (305)
T ss_pred CcceEEEEEecCCHHHHHHHHHHHhcCCCCCcEEEEccCC------CCCC-------CHHHHHhhcCCcEEEEEcCCCcc
Confidence 35789999999998 699998876 555555555554 2221 11111111011111111 22
Q ss_pred cccccceeEEEEece---EEEeecCCCcccCCCCCccchhhhh
Q 024882 84 DSACRCFGYMVSKKK---YIFTIDDDCFVAKDPSGKEINALEQ 123 (261)
Q Consensus 84 s~arRN~GYL~A~a~---~I~~~DDDn~P~~~~~g~~~d~~~~ 123 (261)
..+.=|.|..+|.++ |++.+++|..+.++++.+.++..++
T Consensus 69 ~agg~n~g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~ 111 (305)
T COG1216 69 FAGGFNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEE 111 (305)
T ss_pred chhhhhHHHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHh
Confidence 334444455555444 9999999988888865555555443
No 56
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=92.81 E-value=0.056 Score=49.14 Aligned_cols=52 Identities=10% Similarity=-0.171 Sum_probs=31.5
Q ss_pred eeeecceechhhhcccchhhhhccc-CC-CCccc--chhhhHHHHHHHHHhhhheee
Q 024882 205 LFPMCGMNLAFDRELIGPAMYFGLM-GD-GQPIG--RYDDMWAGWCMKVLFYCMVYI 257 (261)
Q Consensus 205 ~~p~nsqNtaf~r~a~~pa~~~~~~-~~-~~~~~--R~~DIWrg~~~qri~~~~~~~ 257 (261)
..+++|.|++++|++| -..-.++. +. +.+.. =.+|..-|+-.++-=|+++|.
T Consensus 168 ~~~~~G~~~~~Rr~al-~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~~~ 223 (254)
T cd04191 168 EGNYWGHNAIIRVAAF-MEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRLA 223 (254)
T ss_pred ccCccceEEEEEHHHH-HHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEEEc
Confidence 4568899999999987 22111121 11 11211 256888888887777777664
No 57
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=90.70 E-value=0.26 Score=49.50 Aligned_cols=88 Identities=15% Similarity=0.298 Sum_probs=52.3
Q ss_pred CCCeEEEEecccCh----hHHHhh-hcc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCC--cc--cccc
Q 024882 13 KDELDIVIPTIRNL----DFLEMW-RPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPK--AS--CISF 82 (261)
Q Consensus 13 ~~~v~IVVtTi~~p----~~L~~~-~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~--~~--~lP~ 82 (261)
.-.++|+||.+|+. ++|+.. .+. +++++++||.|....++. +..+++-... .+ .++-
T Consensus 65 ~p~vaIlIPA~NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~ndd~T~-------------~~v~~l~~~~p~v~~vv~~~ 131 (504)
T PRK14716 65 EKRIAIFVPAWREADVIGRMLEHNLATLDYENYRIFVGTYPNDPATL-------------REVDRLAARYPRVHLVIVPH 131 (504)
T ss_pred CCceEEEEeccCchhHHHHHHHHHHHcCCCCCeEEEEEECCCChhHH-------------HHHHHHHHHCCCeEEEEeCC
Confidence 44599999999996 677764 444 799999999987222221 1112111100 11 1121
Q ss_pred C----cccccceeEEEE------e---ceEEEeecCCCcccCCC
Q 024882 83 K----DSACRCFGYMVS------K---KKYIFTIDDDCFVAKDP 113 (261)
Q Consensus 83 ~----s~arRN~GYL~A------~---a~~I~~~DDDn~P~~~~ 113 (261)
+ -..+=|.|+-.+ . .|+|+.+|-|+.++++.
T Consensus 132 ~gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~ 175 (504)
T PRK14716 132 DGPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLE 175 (504)
T ss_pred CCCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccH
Confidence 2 233444454322 2 39999999999999883
No 58
>KOG1476 consensus Beta-1,3-glucuronyltransferase B3GAT1/SQV-8 [Posttranslational modification, protein turnover, chaperones]
Probab=89.03 E-value=0.44 Score=45.27 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=29.6
Q ss_pred CCCeEEEEecccCh---hHHHhhhc---ccCCeEEEEEecCC
Q 024882 13 KDELDIVIPTIRNL---DFLEMWRP---FFEPYHLIIVQDGD 48 (261)
Q Consensus 13 ~~~v~IVVtTi~~p---~~L~~~~~---~~~~~~lVVV~D~~ 48 (261)
..-|-||-|||.++ ..|.+++. +-+++|.|||-|..
T Consensus 86 ~~~iivVTPTY~R~~q~~~LtRlanTL~~V~nLhWIVVEd~~ 127 (330)
T KOG1476|consen 86 LPTIIVVTPTYVRPVQAAELTRLANTLRLVPNLHWIVVEDGE 127 (330)
T ss_pred CccEEEEcccccchhHHHHHHHHHHHHhhcCCeeEEEEecCC
Confidence 45577888999998 58888887 36899999999983
No 59
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=88.02 E-value=1.1 Score=40.75 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=27.4
Q ss_pred eEEEEecccCh---hHHHhhhc---ccCCeEEEEEecC
Q 024882 16 LDIVIPTIRNL---DFLEMWRP---FFEPYHLIIVQDG 47 (261)
Q Consensus 16 v~IVVtTi~~p---~~L~~~~~---~~~~~~lVVV~D~ 47 (261)
+-||-||+.++ ..|.++++ ..++++-|||-|+
T Consensus 3 i~vVTPTy~R~~Q~~~LtRLa~TL~lVp~l~WIVVEd~ 40 (223)
T cd00218 3 IYVVTPTYARPVQKAELTRLAHTLRLVPPLHWIVVEDS 40 (223)
T ss_pred EEEECCCCccchhhHHHHHHHHHHhcCCceEEEEEeCC
Confidence 45788899998 58999988 3789999999998
No 60
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=86.29 E-value=1.2 Score=39.95 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=51.9
Q ss_pred CCeEEEEecccCh---h-HHHhhhc----ccCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhC-CCccccccC-
Q 024882 14 DELDIVIPTIRNL---D-FLEMWRP----FFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG-PKASCISFK- 83 (261)
Q Consensus 14 ~~v~IVVtTi~~p---~-~L~~~~~----~~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~-~~~~~lP~~- 83 (261)
.+.+|++||+|+- . ++.-++. .-..|++|+|.|..+--++++. ++.++..+ ...-++|-.
T Consensus 3 ~kYsvilPtYnEk~Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a----------~~L~k~yg~d~i~l~pR~~ 72 (238)
T KOG2978|consen 3 IKYSVILPTYNEKENLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVA----------KALQKIYGEDNILLKPRTK 72 (238)
T ss_pred cceeEEeccccCCCCCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHH----------HHHHHHhCCCcEEEEeccC
Confidence 4679999999975 2 2222222 2568999999997433333332 22222222 223334432
Q ss_pred ---cccccceeEEEEeceEEEeecCCCcccCC
Q 024882 84 ---DSACRCFGYMVSKKKYIFTIDDDCFVAKD 112 (261)
Q Consensus 84 ---s~arRN~GYL~A~a~~I~~~DDDn~P~~~ 112 (261)
-.++=--|.-.|.+++|+-+|-|-.-++.
T Consensus 73 klGLgtAy~hgl~~a~g~fiviMDaDlsHhPk 104 (238)
T KOG2978|consen 73 KLGLGTAYIHGLKHATGDFIVIMDADLSHHPK 104 (238)
T ss_pred cccchHHHHhhhhhccCCeEEEEeCccCCCch
Confidence 12222334556679999999999886665
No 61
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=80.24 E-value=1.6 Score=45.50 Aligned_cols=97 Identities=10% Similarity=0.118 Sum_probs=50.3
Q ss_pred CCCCeEEEEecccCh-h----HHH----hhhcc--cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCC-C---
Q 024882 12 LKDELDIVIPTIRNL-D----FLE----MWRPF--FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP-K--- 76 (261)
Q Consensus 12 ~~~~v~IVVtTi~~p-~----~L~----~~~~~--~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~-~--- 76 (261)
....++||||++++. + .|+ ++... .++++++|+.|+.+.++....+. -+. +-.+++.+. .
T Consensus 122 ~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~----~~~-~L~~~~~~~~~i~y 196 (691)
T PRK05454 122 PEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEA----AWL-ELRAELGGEGRIFY 196 (691)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHH----HHH-HHHHhcCCCCcEEE
Confidence 345699999999986 2 333 33322 35799999999943332221100 000 000011000 0
Q ss_pred ccccccCcccccceeEEEE----eceEEEeecCCCcccCCC
Q 024882 77 ASCISFKDSACRCFGYMVS----KKKYIFTIDDDCFVAKDP 113 (261)
Q Consensus 77 ~~~lP~~s~arRN~GYL~A----~a~~I~~~DDDn~P~~~~ 113 (261)
.+...-....+-|++.... ..|||+..|-|..+.++-
T Consensus 197 r~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~ 237 (691)
T PRK05454 197 RRRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDT 237 (691)
T ss_pred EECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHH
Confidence 0000011233345553332 259999999999999873
No 62
>PLN02458 transferase, transferring glycosyl groups
Probab=72.37 E-value=2.7 Score=40.40 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=25.8
Q ss_pred eEEEEeccc-Ch---hHHHhhhc---ccC-CeEEEEEecC
Q 024882 16 LDIVIPTIR-NL---DFLEMWRP---FFE-PYHLIIVQDG 47 (261)
Q Consensus 16 v~IVVtTi~-~p---~~L~~~~~---~~~-~~~lVVV~D~ 47 (261)
+-||.|||. ++ ..|.++++ ..+ +++-|||-|.
T Consensus 114 IivVTPTY~rR~~Q~a~LTRLahTL~lVp~pL~WIVVEd~ 153 (346)
T PLN02458 114 VIIVTPISTKDRYQGVLLRRLANTLRLVPPPLLWIVVEGQ 153 (346)
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHhcCCCCceEEEEeCC
Confidence 667778896 67 58999988 255 8999999987
No 63
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=70.88 E-value=4.3 Score=42.70 Aligned_cols=90 Identities=13% Similarity=0.133 Sum_probs=50.7
Q ss_pred CCeEEEEecccCh----hHHHhhh-cc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCcccc----ccC
Q 024882 14 DELDIVIPTIRNL----DFLEMWR-PF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCI----SFK 83 (261)
Q Consensus 14 ~~v~IVVtTi~~p----~~L~~~~-~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~l----P~~ 83 (261)
.-++|+||.+|+. +.++.+. .. +++++++|+.|.++.+|...-+. -++++..-..-.. |-+
T Consensus 63 ~~vsIlVPa~nE~~vi~~~i~~ll~~ldYP~~eI~vi~~~nD~~T~~~~~~---------l~~~~p~~~~v~~~~~g~~g 133 (727)
T PRK11234 63 KPLAIMVPAWNETGVIGNMAELAATTLDYENYHIFVGTYPNDPATQADVDA---------VCARFPNVHKVVCARPGPTS 133 (727)
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHhCCCCCeEEEEEecCCChhHHHHHHH---------HHHHCCCcEEEEeCCCCCCC
Confidence 4599999999997 5666553 34 89999999987633332222100 0111111000001 122
Q ss_pred cccccceeEEEE---------eceEEEeecCCCcccCC
Q 024882 84 DSACRCFGYMVS---------KKKYIFTIDDDCFVAKD 112 (261)
Q Consensus 84 s~arRN~GYL~A---------~a~~I~~~DDDn~P~~~ 112 (261)
-..+=|-|+..+ ..++++.+|-|+.|+++
T Consensus 134 Ka~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd 171 (727)
T PRK11234 134 KADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPM 171 (727)
T ss_pred HHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChh
Confidence 333445555444 13567779999999987
No 64
>PF04583 Baculo_p74: Baculoviridae p74 conserved region; InterPro: IPR007663 Baculoviruses are distinct from other virus families in that there are two viral phenotypes: budded virus (BV) and occlusion-derived virus (ODV). BVs disseminate viral infection throughout the tissues of the host and ODVs transmit baculovirus between insect hosts. GFP tagging experiments implicate p74 as an ODV envelope protein [, ].; GO: 0019058 viral infectious cycle
Probab=59.62 E-value=4.3 Score=37.43 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=17.3
Q ss_pred cccccCcCCCCCcCcccCCC
Q 024882 139 TLYDPYREGADFVRGYPFSL 158 (261)
Q Consensus 139 ~ly~~f~~~~~wpRG~P~~~ 158 (261)
.+++|||...+||||||-.+
T Consensus 122 ~~WDPfGYnNMFPr~~ldDL 141 (249)
T PF04583_consen 122 MFWDPFGYNNMFPREYLDDL 141 (249)
T ss_pred HhcCcccccccCCCcchHHH
Confidence 34899999999999999655
No 65
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=57.22 E-value=14 Score=38.88 Aligned_cols=35 Identities=14% Similarity=0.395 Sum_probs=27.1
Q ss_pred CCeEEEEecccCh----hHHHhh-hcc-cCCeEEEEEecCC
Q 024882 14 DELDIVIPTIRNL----DFLEMW-RPF-FEPYHLIIVQDGD 48 (261)
Q Consensus 14 ~~v~IVVtTi~~p----~~L~~~-~~~-~~~~~lVVV~D~~ 48 (261)
.-++|+||.+++. ++++.+ +.+ +++++++|+.+.+
T Consensus 71 ~~vsIlVPa~nE~~VI~~~v~~ll~~ldYp~~~I~v~~~~n 111 (703)
T PRK15489 71 QPLAIMVPAWKEYDVIAKMIENMLATLDYRRYVIFVGTYPN 111 (703)
T ss_pred CceEEEEeCCCcHHHHHHHHHHHHhcCCCCCeEEEEEecCC
Confidence 4599999999997 577774 345 8999999976443
No 66
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=56.00 E-value=5.1 Score=33.79 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCCCeEEEEecccChh----HHHhhhcc----cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhC
Q 024882 3 TPSTKPTPLLKDELDIVIPTIRNLD----FLEMWRPF----FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG 74 (261)
Q Consensus 3 ~~~~~~~~~~~~~v~IVVtTi~~p~----~L~~~~~~----~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~ 74 (261)
|+..+..|..+..+.||||=..+.+ +|..+.++ .-.+++.||-=. .
T Consensus 36 G~~~p~~C~~~~kvAiIIPyRdR~~hL~~fl~~l~~~L~rQ~~~y~I~vieQ~--------~------------------ 89 (136)
T PF13733_consen 36 GHWKPPDCKPRHKVAIIIPYRDREEHLRIFLPHLHPFLQRQQLDYRIFVIEQV--------D------------------ 89 (136)
T ss_dssp TEE--SSSB-S-EEEEEEEESS-HHHHHHHHHHHHHHHHHTT-EEEEEEEEE---------S------------------
T ss_pred ceecCCccccccceEEEEEeCCHHHHHHHHHHHHHHHHhhCcceEEEEEEeec--------c------------------
Confidence 4445666777888999999988863 44444442 235566666421 0
Q ss_pred CCccccccCcccccceeEEEEe----ceEEEeecCCCcccCC
Q 024882 75 PKASCISFKDSACRCFGYMVSK----KKYIFTIDDDCFVAKD 112 (261)
Q Consensus 75 ~~~~~lP~~s~arRN~GYL~A~----a~~I~~~DDDn~P~~~ 112 (261)
-.||+-..-.|+||+.|. .++++|=|=|-+|.++
T Consensus 90 ----~~~FNRg~L~NvGf~eA~~~~~~dc~ifHDVDllP~~~ 127 (136)
T PF13733_consen 90 ----NGPFNRGKLMNVGFLEALKDDDFDCFIFHDVDLLPEND 127 (136)
T ss_dssp ----SS---HHHHHHHHHHHHHHHS--SEEEEE-TTEEESBT
T ss_pred ----CCCCchhhhhhHHHHHHhhccCCCEEEEecccccccCC
Confidence 124777777899999994 7899999999999987
No 67
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=36.02 E-value=26 Score=34.26 Aligned_cols=95 Identities=18% Similarity=0.277 Sum_probs=55.7
Q ss_pred CCeEEEEecccCh-hHHHhhhcc-cCCeEEEEEecCCCCcccccCCCcccc------ccChhhhh-------------hh
Q 024882 14 DELDIVIPTIRNL-DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYE------LYNRNDIN-------------RI 72 (261)
Q Consensus 14 ~~v~IVVtTi~~p-~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~------~~~~~dq~-------------~~ 72 (261)
++..||||.-++. ..|++.-.. -.++-+|||.... ..-+..|..| ++...+++ ++
T Consensus 51 ~~mAIVVP~KdE~l~lleGVL~gIPh~c~iIvVSNS~----r~~~d~f~~E~dlv~~f~~~t~r~~i~vHQkDp~la~Af 126 (393)
T PRK14503 51 GRMAIVVPVKNERLKLLEGVLKGIPHECPIIVVSNSK----REPPDRFKLEVDLVRHFYRLTQRPIIIVHQKDPGLAEAL 126 (393)
T ss_pred hCcEEEEEcCCCchhHHhhHhhcCCCCCeEEEEeCCC----CCCchHHHHHHHHHHHHHhhhcCceEEEEcCCHHHHHHH
Confidence 4688999999975 777776654 5678889998871 1123444422 11111111 11
Q ss_pred h-CCCccccccCcccccc------eeEEEEe---ceEEEeecCCCcccCC
Q 024882 73 L-GPKASCISFKDSACRC------FGYMVSK---KKYIFTIDDDCFVAKD 112 (261)
Q Consensus 73 l-~~~~~~lP~~s~arRN------~GYL~A~---a~~I~~~DDDn~P~~~ 112 (261)
- .-+..++--++..|.- +|.|.|+ ++||=|+|-||...+.
T Consensus 127 ~~aGyp~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDADNyiPGa 176 (393)
T PRK14503 127 KEAGYPYILDENGLVRSGKGEGMIIGLLLAKALGARYVGFVDADNYIPGA 176 (393)
T ss_pred HHcCChhhhCCCCceecCcchHHHHHHHHHHHhCCCeEeEeecccCCCch
Confidence 1 1123344333333332 5567774 9999999999997654
No 68
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=35.06 E-value=26 Score=34.96 Aligned_cols=93 Identities=12% Similarity=0.145 Sum_probs=54.6
Q ss_pred eEEEEecccCh-h-HHHhhhcc---cCC---eEEEEEecCCCCcccccCCC-----cc--ccccChhhhhhhhCCCcccc
Q 024882 16 LDIVIPTIRNL-D-FLEMWRPF---FEP---YHLIIVQDGDPSKTIKVPDG-----FD--YELYNRNDINRILGPKASCI 80 (261)
Q Consensus 16 v~IVVtTi~~p-~-~L~~~~~~---~~~---~~lVVV~D~~~~~~~ktp~~-----~~--~~~~~~~dq~~~l~~~~~~l 80 (261)
.+|||.--++. . -|+-..+- .++ -++|.|.|-.+.+.+|.--| |+ +.++..+++|
T Consensus 157 ~SVviVFHNEGws~LmRTVHSVi~RsP~~~l~eivlvDDfSdKehLkekLDeYv~~fnGlVkV~Rne~RE---------- 226 (603)
T KOG3737|consen 157 SSVVIVFHNEGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFSDKEHLKEKLDEYVKLFNGLVKVFRNERRE---------- 226 (603)
T ss_pred ceEEEEEecCccHHHHHHHHHHHhcCcHHhhheEEEeccCCccHHHHHHHHHHHHHhcCEEEEEecchhh----------
Confidence 56777766665 2 22222221 111 27888887755555543311 11 1122222222
Q ss_pred ccCcccccceeEEEEeceEEEeecCCCcccCCCCCccchh
Q 024882 81 SFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINA 120 (261)
Q Consensus 81 P~~s~arRN~GYL~A~a~~I~~~DDDn~P~~~~~g~~~d~ 120 (261)
+--.+|++|=.-|.+|+|+|+|..|.+...|+-..+-.
T Consensus 227 --GLI~aRSiGA~~atGeV~ifLDAHCEVntNWlpPLlAP 264 (603)
T KOG3737|consen 227 --GLIQARSIGAQKATGEVLIFLDAHCEVNTNWLPPLLAP 264 (603)
T ss_pred --hhhhhhccchhhccccEEEEEecceeeecccccccccc
Confidence 23457889988889999999999999999985544433
No 69
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=34.06 E-value=29 Score=33.80 Aligned_cols=95 Identities=20% Similarity=0.268 Sum_probs=55.6
Q ss_pred CCeEEEEecccCh-hHHHhhhcc-cCCeEEEEEecCCCCcccccCCCccccc-----c-Chhhh-------------hhh
Q 024882 14 DELDIVIPTIRNL-DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYEL-----Y-NRNDI-------------NRI 72 (261)
Q Consensus 14 ~~v~IVVtTi~~p-~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~-----~-~~~dq-------------~~~ 72 (261)
++..||||.-++. ..|++.-.. -.++-+|||.... ..-+..|..|+ | ...++ +++
T Consensus 50 ~~maIVVP~KdE~l~lleGVL~gIPh~c~iIvVSNS~----r~~~d~f~~E~d~~~~f~~~t~r~~i~vHQkDp~la~Af 125 (381)
T TIGR02460 50 GKTAIVVPVKNEKLHLLEGVLSGIPHECPIIIVSNSK----REPPDRFKMEVDLIRHFSNLTHRKIIIIHQKDPALAEAF 125 (381)
T ss_pred hCcEEEEEcCCCchhHHhhHhhcCCCCCeEEEEeCCC----CCChhHHHHHHHHHHHHHHhhcCceEEEEcCCHHHHHHH
Confidence 4578999999976 777776654 5678889998872 12233444221 1 11111 111
Q ss_pred h-CCCccccccCcccccc------eeEEEEe---ceEEEeecCCCcccCC
Q 024882 73 L-GPKASCISFKDSACRC------FGYMVSK---KKYIFTIDDDCFVAKD 112 (261)
Q Consensus 73 l-~~~~~~lP~~s~arRN------~GYL~A~---a~~I~~~DDDn~P~~~ 112 (261)
- .-+..++--++..|.- +|.|.|+ ++||=|+|-||...+.
T Consensus 126 ~~~gy~~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDaDNyiPGa 175 (381)
T TIGR02460 126 KEVGYTSILGENGRVRSGKGEGMLLGLLLAKAIGAEYVGFVDADNYFPGA 175 (381)
T ss_pred HHcCchhhhCCCCceecCcchHHHHHHHHHHHhCCceEeEeecccCCCch
Confidence 1 1123344333333332 5566674 9999999999997654
No 70
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=26.76 E-value=24 Score=33.21 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=18.4
Q ss_pred ceEEEeecCCCcccCCCCCccchh
Q 024882 97 KKYIFTIDDDCFVAKDPSGKEINA 120 (261)
Q Consensus 97 a~~I~~~DDDn~P~~~~~g~~~d~ 120 (261)
++|..-+.||-...++|+....++
T Consensus 170 ~~YyL~LEDDVia~~~f~~~i~~~ 193 (297)
T PF04666_consen 170 GDYYLQLEDDVIAAPGFLSRIKRF 193 (297)
T ss_pred CCeEEEecCCeEechhHHHHHHHH
Confidence 899999999999988874433333
No 71
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=23.76 E-value=95 Score=28.10 Aligned_cols=69 Identities=17% Similarity=0.382 Sum_probs=47.8
Q ss_pred CeEEEEecccChh----HHHhhhccc----CCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccccCccc
Q 024882 15 ELDIVIPTIRNLD----FLEMWRPFF----EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSA 86 (261)
Q Consensus 15 ~v~IVVtTi~~p~----~L~~~~~~~----~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~lP~~s~a 86 (261)
.+.||||=+.+.+ +|.-+.+++ -++++.||-=. .--||+-..
T Consensus 3 ~~aiivpyr~R~~~l~~~l~~~~~~L~rq~~~~~i~vi~Q~------------------------------~~~~FNR~~ 52 (219)
T cd00899 3 KVAIIVPFRNRFEHLLIFLPHLHPFLQRQQLDYRIFVIEQV------------------------------GNFRFNRAK 52 (219)
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEEec------------------------------CCccchhhh
Confidence 5889999988874 444444432 23455554321 012478888
Q ss_pred ccceeEEEEe----ceEEEeecCCCcccCCC
Q 024882 87 CRCFGYMVSK----KKYIFTIDDDCFVAKDP 113 (261)
Q Consensus 87 rRN~GYL~A~----a~~I~~~DDDn~P~~~~ 113 (261)
.-|+||+.|. .+++++=|=|-.|.++.
T Consensus 53 llNvG~~~a~k~~~~dc~i~hDVDllP~~~~ 83 (219)
T cd00899 53 LLNVGFLEALKDGDWDCFIFHDVDLLPENDR 83 (219)
T ss_pred hhhHHHHHHhhcCCccEEEEecccccccCcc
Confidence 8899999995 57899999999999884
No 72
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=23.58 E-value=85 Score=29.39 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=19.1
Q ss_pred hHHHhhhc-c-cCCeEEEEEecCCCCc
Q 024882 27 DFLEMWRP-F-FEPYHLIIVQDGDPSK 51 (261)
Q Consensus 27 ~~L~~~~~-~-~~~~~lVVV~D~~~~~ 51 (261)
+|.+.+.+ + -+...++||||+...+
T Consensus 217 ~cFe~I~~Rfg~p~~~f~~IGDG~eEe 243 (274)
T TIGR01658 217 QCFKWIKERFGHPKVRFCAIGDGWEEC 243 (274)
T ss_pred HHHHHHHHHhCCCCceEEEeCCChhHH
Confidence 48888877 3 5589999999994443
No 73
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=22.37 E-value=76 Score=28.07 Aligned_cols=75 Identities=17% Similarity=0.202 Sum_probs=39.5
Q ss_pred eEEEEecccCh---hHHHhhhcc-cCCeEEEEEecCCCCcccccCCCccccccChhhhhhhhCCCccccccCccccccee
Q 024882 16 LDIVIPTIRNL---DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSACRCFG 91 (261)
Q Consensus 16 v~IVVtTi~~p---~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~~~~~~dq~~~l~~~~~~lP~~s~arRN~G 91 (261)
++||+.+-++- +|++.+.+. .+..+.|-|-..... + .-.+.=|.|
T Consensus 1 isiI~c~n~~~~~~~~~~~i~~~~~~~~~~i~i~~~~~~---~----------------------------s~~~~yN~a 49 (217)
T PF13712_consen 1 ISIIICVNDEELYEECLRSIKRLIGPPGELIEIDNVRNA---K----------------------------SMAAAYNEA 49 (217)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHTT--TEEEEEEE-SSS----S-----------------------------TTTHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeccCCC---c----------------------------CHHHHHHHH
Confidence 45555554432 688888876 677777766543111 1 111222333
Q ss_pred EEEEeceEEEeecCCCcccCC-CCCccchhh
Q 024882 92 YMVSKKKYIFTIDDDCFVAKD-PSGKEINAL 121 (261)
Q Consensus 92 YL~A~a~~I~~~DDDn~P~~~-~~g~~~d~~ 121 (261)
--.|.++|++|+.||....+. |+...++.+
T Consensus 50 ~~~a~~~ylvflHqDv~i~~~~~l~~il~~~ 80 (217)
T PF13712_consen 50 MEKAKAKYLVFLHQDVFIINENWLEDILEIF 80 (217)
T ss_dssp GGG--SSEEEEEETTEE-SSHHHHHHHHHHH
T ss_pred HHhCCCCEEEEEeCCeEEcchhHHHHHHHHH
Confidence 344679999999999998764 433344444
No 74
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=20.83 E-value=56 Score=34.47 Aligned_cols=95 Identities=16% Similarity=0.215 Sum_probs=54.8
Q ss_pred CCeEEEEecccCh-hHHHhhhcc-cCCeEEEEEecCCCCcccccCCCcccc------ccChhhh-------------hhh
Q 024882 14 DELDIVIPTIRNL-DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYE------LYNRNDI-------------NRI 72 (261)
Q Consensus 14 ~~v~IVVtTi~~p-~~L~~~~~~-~~~~~lVVV~D~~~~~~~ktp~~~~~~------~~~~~dq-------------~~~ 72 (261)
++..||||.-++. ..|++.-.. -.++-+|||..... ..++-|..| ++...++ +++
T Consensus 55 ~~~aivvp~k~e~~~~~~gvl~~ip~~c~ii~vsns~r----~~~d~~~~e~~~~~~~~~~~~~~~~~vhq~dp~~a~a~ 130 (694)
T PRK14502 55 KKMAIVLPIKDEDLKVFEGVLSGIPHDCLMIVISNSSK----QEVDNFKNEKDIVNRFCRITHRQAIVVHQKNPELANAI 130 (694)
T ss_pred hCcEEEEEcCCCchhHHhhHhhcCCCCCeEEEEeCCCC----CchHHHHHHHHHHHHHHHhhcCceEEEEcCCHHHHHHH
Confidence 4578999999976 777776654 57788899988721 123334321 1111111 111
Q ss_pred h-CCCccccccCcccccc------eeEEEEe---ceEEEeecCCCcccCC
Q 024882 73 L-GPKASCISFKDSACRC------FGYMVSK---KKYIFTIDDDCFVAKD 112 (261)
Q Consensus 73 l-~~~~~~lP~~s~arRN------~GYL~A~---a~~I~~~DDDn~P~~~ 112 (261)
. .-+..++--++..|.- +|.|.|+ ++||=|+|-||...+.
T Consensus 131 ~~~g~~~~~~~~~~vr~gk~egm~~g~~la~~~g~~yvgfidadny~pg~ 180 (694)
T PRK14502 131 ADAGYPELLGEDGLIRSGKAEGMILGIILTMFSGRDYVGFIDTDNYIPGA 180 (694)
T ss_pred HHcCChhhhCCCCceecCcchHHHHHHHHHHhcCCceEeEeeccCCCCch
Confidence 1 1123344333333322 5566664 9999999999997654
No 75
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=20.11 E-value=28 Score=28.87 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=13.3
Q ss_pred EEEeecCCCcccCCC
Q 024882 99 YIFTIDDDCFVAKDP 113 (261)
Q Consensus 99 ~I~~~DDDn~P~~~~ 113 (261)
||+.+|+|+.+.++.
T Consensus 1 ~v~~~DaDt~~~~d~ 15 (193)
T PF13632_consen 1 YVLFLDADTRLPPDF 15 (193)
T ss_pred CEEEEcCCCCCChHH
Confidence 689999999998874
Done!