BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024883
         (261 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2Q3N|A Chain A, Agglutinin From Abrus Precatorius (Apa-I)
          Length = 260

 Score = 27.3 bits (59), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 25/220 (11%)

Query: 9   GMIFGSEYFED---------YIG-QLALATMASVEVEEDKQDIEVYKHKIQEK---MRAM 55
           G+I+G     D         Y+  +L+ +   S+++  D  +  V  ++   +    R  
Sbjct: 30  GLIYGIPVLRDPSTVEKPNQYVTVELSYSDTVSIQLGIDLTNAYVVAYRAGSESFFFRNA 89

Query: 56  QKEREEKLITILKNHLEPFVDGRADEFVKWANAEARRLSGAAFGEAMLHTIGYIYTRRAA 115
                  L T  + +  PF DG  D+  KWA+   +R+S     EA+   I ++ +  + 
Sbjct: 90  PASASTYLFTGTQQYSLPF-DGNYDDLEKWAHQSRQRISLGL--EALRQGIKFLRSGASD 146

Query: 116 KELGKDKRYMKVPFLAEWVRDKGHLIKSQVSAASGAVSLIQIQEELKKLNQLENKEENLM 175
            E       + +  +AE  R + ++ K  V + S   +    Q +   L+ LEN  E L 
Sbjct: 147 DEEIARTLIVIIQMVAEAARFR-YVSKLVVISLSNRAAF---QPDPSMLS-LENTWEPLS 201

Query: 176 KAIEAKKDAMLQSLWQINVVDIETTLSRVCQAVLKDPSVS 215
           +A++      +Q  +  NV  I     RV  + L  PSVS
Sbjct: 202 RAVQHT----VQDTFPQNVTLINVRQERVVVSSLSHPSVS 237


>pdb|2ZR1|A Chain A, Agglutinin From Abrus Precatorius
 pdb|2ZR1|C Chain C, Agglutinin From Abrus Precatorius
          Length = 258

 Score = 27.3 bits (59), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 25/220 (11%)

Query: 9   GMIFGSEYFED---------YIG-QLALATMASVEVEEDKQDIEVYKHKIQEK---MRAM 55
           G+I+G     D         Y+  +L+ +   S+++  D  +  V  ++   +    R  
Sbjct: 30  GLIYGIPVLRDPSTVEKPNQYVTVELSYSDTVSIQLGIDLTNAYVVAYRAGSESFFFRNA 89

Query: 56  QKEREEKLITILKNHLEPFVDGRADEFVKWANAEARRLSGAAFGEAMLHTIGYIYTRRAA 115
                  L T  + +  PF DG  D+  KWA+   +R+S     EA+   I ++ +  + 
Sbjct: 90  PASASTYLFTGTQQYSLPF-DGNYDDLEKWAHQSRQRISLGL--EALRQGIKFLRSGASD 146

Query: 116 KELGKDKRYMKVPFLAEWVRDKGHLIKSQVSAASGAVSLIQIQEELKKLNQLENKEENLM 175
            E       + +  +AE  R + ++ K  V + S   +    Q +   L+ LEN  E L 
Sbjct: 147 DEEIARTLIVIIQMVAEAARFR-YVSKLVVISLSNRAAF---QPDPSMLS-LENTWEPLS 201

Query: 176 KAIEAKKDAMLQSLWQINVVDIETTLSRVCQAVLKDPSVS 215
           +A++      +Q  +  NV  I     RV  + L  PSVS
Sbjct: 202 RAVQHT----VQDTFPQNVTLINVRQERVVVSSLSHPSVS 237


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.128    0.349 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,428,084
Number of Sequences: 62578
Number of extensions: 225469
Number of successful extensions: 944
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 939
Number of HSP's gapped (non-prelim): 16
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)