Query 024883
Match_columns 261
No_of_seqs 116 out of 280
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 08:09:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024883.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024883hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14308 DnaJ-X: X-domain of D 100.0 1.2E-56 2.6E-61 390.7 23.4 192 55-246 2-195 (204)
2 PTZ00341 Ring-infected erythro 100.0 3.3E-52 7.2E-57 417.0 28.2 242 1-246 647-905 (1136)
3 PTZ00475 RESA-like protein; Pr 100.0 1.8E-50 3.9E-55 359.8 25.0 233 1-235 3-279 (282)
4 KOG0691 Molecular chaperone (D 99.9 2.3E-25 5E-30 202.7 16.8 209 1-234 80-291 (296)
5 PHA03102 Small T antigen; Revi 90.8 0.11 2.4E-06 43.5 1.2 26 3-28 79-104 (153)
6 PF03207 OspD: Borrelia outer 72.0 39 0.00084 29.0 9.0 31 183-213 186-222 (254)
7 PF09932 DUF2164: Uncharacteri 61.9 17 0.00036 26.9 4.3 43 66-115 10-52 (76)
8 KOG0543 FKBP-type peptidyl-pro 60.0 1.4E+02 0.003 29.0 11.1 67 183-249 258-330 (397)
9 COG1698 Uncharacterized protei 50.1 36 0.00078 26.0 4.5 37 195-231 9-48 (93)
10 PF14891 Peptidase_M91: Effect 33.8 54 0.0012 27.6 3.7 31 75-106 7-37 (174)
11 PF03685 UPF0147: Uncharacteri 33.5 69 0.0015 24.2 3.7 36 196-231 3-41 (85)
12 PF04719 TAFII28: hTAFII28-lik 33.5 78 0.0017 24.1 4.1 49 190-239 19-68 (90)
13 PRK04330 hypothetical protein; 32.4 96 0.0021 23.6 4.3 36 196-231 6-44 (88)
14 COG5460 Uncharacterized conser 30.9 1.2E+02 0.0026 22.6 4.5 41 67-114 14-54 (82)
15 COG3924 Predicted membrane pro 28.7 65 0.0014 23.7 2.8 34 95-132 13-47 (80)
16 PF10653 Phage-A118_gp45: Prot 22.0 36 0.00079 23.4 0.4 16 12-27 40-55 (62)
17 PRK10626 hypothetical protein; 21.0 3E+02 0.0065 24.8 6.1 48 59-106 119-172 (239)
No 1
>PF14308 DnaJ-X: X-domain of DnaJ-containing
Probab=100.00 E-value=1.2e-56 Score=390.71 Aligned_cols=192 Identities=39% Similarity=0.573 Sum_probs=182.2
Q ss_pred HHHHHHHHHHHHHHhhchhhhcCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHH
Q 024883 55 MQKEREEKLITILKNHLEPFVDGRADEFVKWANAEARRLSGAAFGEAMLHTIGYIYTRRAAKELGKDKRYMKVPFLAEWV 134 (261)
Q Consensus 55 ~q~~R~~~La~~L~~rL~~yv~g~~~~f~~~~~~Ea~~L~~~sFG~~iL~~IG~vY~~~A~~~l~~~~~~~G~~~~~~~~ 134 (261)
.|++||++||.+|++||+|||+|+.+.|.++|+.||++|+.+|||++|||+|||||.++|++||++..+|+|+|++++++
T Consensus 2 ~q~~R~~~La~~L~~rL~~yv~~~~~~f~~~~~~Ea~~L~~~sFg~~iL~~IG~vY~~~A~~~l~~~~~~lG~~~~~~~~ 81 (204)
T PF14308_consen 2 EQKEREVELAEKLRDRLQPYVDGDKEEFKEKMEEEAEDLKEESFGVEILHSIGWVYENKAKQFLGKKKTFLGIGGFFARM 81 (204)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024883 135 RDKGHLIKSQVSAASGAVSLIQIQEELKKLNQ--LENKEENLMKAIEAKKDAMLQSLWQINVVDIETTLSRVCQAVLKDP 212 (261)
Q Consensus 135 r~k~~~~k~~~~~~~sa~~~~~~~~~~~k~~~--~~~~ee~~~~~~e~~~~~~L~~~w~~~~~DIe~tlr~vc~kVL~D~ 212 (261)
++|+|.++++|+++++|++++++++++.+.+. ++.++++..++++...+++|+++|+++++|||+|||+||++||+|+
T Consensus 82 k~k~~~~k~~~~~~~sa~~~~~~~~~~~~~~~~~~~~~~e~~~~~e~~~~~~~L~~~w~~~~~DIe~Tlr~Vc~~VL~D~ 161 (204)
T PF14308_consen 82 KEKGRSVKNQFSTAKSALDAQSTMEELQKAEEKNGEENEEERAELEEEILGKMLDAIWKINKFDIESTLREVCDKVLYDK 161 (204)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999653 3467788888888889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhchhhhcccccc
Q 024883 213 SVSKETLKLRAKALKKLGTIFQGAKAAYSRENSL 246 (261)
Q Consensus 213 ~V~~~~R~~RA~aL~~LG~if~~~~~~~~~~~~~ 246 (261)
+||.++|++||+||++||++|++++++.++....
T Consensus 162 ~V~~~~r~~RA~aL~~LG~if~~~~~~~~~~~~~ 195 (204)
T PF14308_consen 162 GVDKETRLKRAEALKILGKIFQKVKRDKKEKEEA 195 (204)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCccccchH
Confidence 9999999999999999999999999997766554
No 2
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=100.00 E-value=3.3e-52 Score=417.03 Aligned_cols=242 Identities=20% Similarity=0.325 Sum_probs=211.0
Q ss_pred CCCHHHHHHHhhChhhhhhhhchhhHHHHhhhhhhhc--cccHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCc
Q 024883 1 MVDAAAVFGMIFGSEYFEDYIGQLALATMASVEVEED--KQDIEVYKHKIQEKMRAMQKEREEKLITILKNHLEPFVDGR 78 (261)
Q Consensus 1 ~iDp~~fF~~lFGse~f~~yIG~l~ia~~~~~~~~~~--~~~~~~~~~~~~~~~~~~q~~R~~~La~~L~~rL~~yv~g~ 78 (261)
|+||++|| ||||||.|.+|||+|+|++++...++.. +.+.+.+.+.+++.|++.|++|+++||.+|++||+|||+|+
T Consensus 647 ~iDP~~Ff-mlFgse~F~dYiG~l~iatl~k~~fe~~~s~~d~~~~~e~l~e~m~~~QkeRE~kLA~~LkdRL~~YVdgd 725 (1136)
T PTZ00341 647 FIHPSIFY-LLASLEKFADFTGSPQIVTLLKFFFEKKLSMNDLDNKSEHLLKFMEQYQKEREAHISENLINILQPCIAGD 725 (1136)
T ss_pred ccCHHHHH-HHhhhHHHHHhcCCHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 68999988 7999999999999999999987776553 34455566788999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHhhhhhHHHHHHHHHHHHH-HHHHH
Q 024883 79 ADEFVKWANAEARRLSGAAFGEAMLHTIGYIYTRRAAKELGKDKRYMKVPFLAEWVRDKGHLIKSQVSAASGAV-SLIQI 157 (261)
Q Consensus 79 ~~~f~~~~~~Ea~~L~~~sFG~~iL~~IG~vY~~~A~~~l~~~~~~~G~~~~~~~~r~k~~~~k~~~~~~~sa~-~~~~~ 157 (261)
.+ |...++.||+.|+.+|||.+|||+|||||.++|++||+++++ |+++++++++.++.+++++++++++++ +++.+
T Consensus 726 ~~-w~~~~e~Ei~~L~~sSFG~~IL~tIGwiY~n~A~~fL~~~k~--g~~kl~~r~k~n~~~v~~~~n~lss~lkda~~t 802 (1136)
T PTZ00341 726 RK-WDVPIIDKIEELKGSPFDIAIIDSIGWIFKHVAKSHLKKPKK--AAKKLEQRSKANKEELANENNKLMNILKEYFGN 802 (1136)
T ss_pred HH-HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhccch--hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 75 999999999999999999999999999999999999999887 778999999999999999999999999 99999
Q ss_pred HHHHHHhccc----cccHH------HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 024883 158 QEELKKLNQL----ENKEE------NL----MKAIEAKKDAMLQSLWQINVVDIETTLSRVCQAVLKDPSVSKETLKLRA 223 (261)
Q Consensus 158 ~~~~~k~~~~----~~~ee------~~----~~~~e~~~~~~L~~~w~~~~~DIe~tlr~vc~kVL~D~~V~~~~R~~RA 223 (261)
+++++++..+ ..+.+ ++ .......++++|.++|+++++|||+|||.||++||.|++||.++|++||
T Consensus 803 ~eq~nki~~n~En~t~~~~nen~~k~i~~l~~eee~~ilgkiL~~iw~isl~DIE~TVR~VCekVL~Dk~Vd~ktRikRA 882 (1136)
T PTZ00341 803 NEQINSITYNFENINLNEDNENGSKKILDLNHKDQKEIFEEIISYIVDISLSDIENTAKNAAEQILSDEGLDEKKLKKRA 882 (1136)
T ss_pred HHHHHHhhhhhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 9999886421 11110 00 0113445789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhchhhhcccccc
Q 024883 224 KALKKLGTIFQGAKAAYSRENSL 246 (261)
Q Consensus 224 ~aL~~LG~if~~~~~~~~~~~~~ 246 (261)
+||++||.+|++++...+..+-+
T Consensus 883 eaLkiLG~iMqk~a~~~K~~KK~ 905 (1136)
T PTZ00341 883 ESLKKLANAIEKYAGGGKKDKKA 905 (1136)
T ss_pred HHHHHHHHHHHHHHhhccccccc
Confidence 99999999999998776644433
No 3
>PTZ00475 RESA-like protein; Provisional
Probab=100.00 E-value=1.8e-50 Score=359.83 Aligned_cols=233 Identities=22% Similarity=0.342 Sum_probs=177.4
Q ss_pred CCCHHHHHHHhhChhhhhhhhchhhHHHHhhhhhhhc--cccHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCc
Q 024883 1 MVDAAAVFGMIFGSEYFEDYIGQLALATMASVEVEED--KQDIEVYKHKIQEKMRAMQKEREEKLITILKNHLEPFVDGR 78 (261)
Q Consensus 1 ~iDp~~fF~~lFGse~f~~yIG~l~ia~~~~~~~~~~--~~~~~~~~~~~~~~~~~~q~~R~~~La~~L~~rL~~yv~g~ 78 (261)
||||+.||+||||||.|+||||+|+|++++...++.+ ..+.+...+.+++.|+++|++||++||..|++||+|||+|
T Consensus 3 iIDP~~fF~mlFgSe~l~~YIG~L~ma~~v~l~fe~~~~~edi~~~~~~i~~~M~~~QkeRE~kLAl~LrdrLq~YVdg- 81 (282)
T PTZ00475 3 IIVPFIFFNLIFTSDMMYEYIENTKVPIFVKLFFGKSIFIEDIFYYVGMIMKEMMEGQNIREEEVAELLKDRLDLYIDN- 81 (282)
T ss_pred cccHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-
Confidence 6899999999999999999999999999998877665 3455667789999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHH-----hhhhhH--HHHHH----HH
Q 024883 79 ADEFVKWANAEARRLSGAAFGEAMLHTIGYIYTRRAAKELGKDKRYMKVPFLAEWV-----RDKGHL--IKSQV----SA 147 (261)
Q Consensus 79 ~~~f~~~~~~Ea~~L~~~sFG~~iL~~IG~vY~~~A~~~l~~~~~~~G~~~~~~~~-----r~k~~~--~k~~~----~~ 147 (261)
.++|..+|+.||.+|+.+|||..|||+|||+|.|+|++|||..+.. |++.....+ |.+.+. +.+.. +.
T Consensus 82 ~~ew~~~~e~Eak~L~~ssFg~~iLesIGwiY~Nva~~ylge~~~~-~l~~k~~~~~~~~~r~~rn~~~l~~~~~~~~~~ 160 (282)
T PTZ00475 82 EDEWEKLMENEISMLLKSSFSNFILESIGWTYENVSNIFLEEKANS-GINKKDIYLKEANERMIRNSIVLRQCKSRFISI 160 (282)
T ss_pred hHHHHHHHHHHHHHHHhCcccHHHHHHhHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5569999999999999999999999999999999999999999885 776653222 111111 11111 12
Q ss_pred HHHHHHHHHHH----HHHH---H----hccccc----------------cHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 024883 148 ASGAVSLIQIQ----EELK---K----LNQLEN----------------KEENLMKAI----EAKKDAMLQSLWQINVVD 196 (261)
Q Consensus 148 ~~sa~~~~~~~----~~~~---k----~~~~~~----------------~ee~~~~~~----e~~~~~~L~~~w~~~~~D 196 (261)
+.+-+...... ..-+ . .+...+ ..+++.... ...++.+|..+.+++++|
T Consensus 161 ~~~~~~~~~~~n~~~~~~~~~~ss~~~~~d~~nn~~~~~~~~~~~~~n~~~~ni~~l~~~ek~kil~~il~~i~~i~l~D 240 (282)
T PTZ00475 161 ITNYYPFKEQNNPFIKQAQYVSSSNYVLDDIINNIDYSIDNIHRAIDNLYYEHILNLLEEEKNEILEEILRNILKIILCD 240 (282)
T ss_pred HHhhccchhhhhhHHHHhhhcccccccccccccchhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211111000 0000 0 000000 011221211 122578899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 024883 197 IETTLSRVCQAVLKDPSVSKETLKLRAKALKKLGTIFQG 235 (261)
Q Consensus 197 Ie~tlr~vc~kVL~D~~V~~~~R~~RA~aL~~LG~if~~ 235 (261)
||.|||.||++||+|+|||.++|++||++|.+||.++.+
T Consensus 241 IE~Tvk~~a~~vl~d~~vd~~~~~kRa~~l~~LG~~~l~ 279 (282)
T PTZ00475 241 VETTVRRSAQKVLQNAEGDTNLMLKRAKGLQSLGKMILQ 279 (282)
T ss_pred HHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999864
No 4
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.3e-25 Score=202.72 Aligned_cols=209 Identities=38% Similarity=0.512 Sum_probs=174.0
Q ss_pred CCCHHHHHHHhhChhhhhhhhchhhHHHHhhhhhhhccccHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCchH
Q 024883 1 MVDAAAVFGMIFGSEYFEDYIGQLALATMASVEVEEDKQDIEVYKHKIQEKMRAMQKEREEKLITILKNHLEPFVDGRAD 80 (261)
Q Consensus 1 ~iDp~~fF~~lFGse~f~~yIG~l~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~R~~~La~~L~~rL~~yv~g~~~ 80 (261)
+.||..+|.++||+|.|+.|+|.+.+...+ .+.+... ..++++....|.+|+.+|+..|+++|.+|+++. +
T Consensus 80 ~~d~~~~~r~~f~~dl~~~~~~~~a~~~~~-~e~~~e~-------~~~~~k~~~~~~er~~~l~~~~~~~l~~~~~~~-~ 150 (296)
T KOG0691|consen 80 REDQADGFRKKFGSDLFERERGALALLKES-EESELER-------ERLQEKFRAVQRERVDKLVEILREKLSEVVESV-E 150 (296)
T ss_pred hhhHHHHHHHHhhhhhhhhHHHHHhHHhhh-hhhhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-h
Confidence 469999999999999999999999999866 1111110 134457888999999999999999999999977 4
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-HHHHHhhhcccccchhhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 024883 81 EFVKWANAEARRLSGAAFGEAMLHTIGYIYTR-RAAKELGKDKRYMKVPFLAEWVRDKGHLIKSQVSAASGAVSLIQIQE 159 (261)
Q Consensus 81 ~f~~~~~~Ea~~L~~~sFG~~iL~~IG~vY~~-~A~~~l~~~~~~~G~~~~~~~~r~k~~~~k~~~~~~~sa~~~~~~~~ 159 (261)
++++..|+..|..++||.+++|+||.+|.+ .|..|+.. .+++|+++.+.+.+.+|+.++.+|+++..++..+..+.
T Consensus 151 --~~~~~~e~~~l~~e~~~~e~~~~~g~~y~~~~~~~~~~~-~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 227 (296)
T KOG0691|consen 151 --ERKLATEALQLQRERFGEELLHTIGRTYSRTKALKPIKF-RTSPGVSKLSEGSRAKGGALRAMWNLAAGAVALYGGQD 227 (296)
T ss_pred --hhhhhHHHHHHHHhhhhHHHHHhhcccchhhHhhhcccc-ccccCcchhhhcccccchhHHHHHhhhHHHHHHHHHHH
Confidence 899999999999999999999999999996 66666544 45789999999999999999999999999999999999
Q ss_pred HHHHhcccc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH
Q 024883 160 ELKKLNQLE--NKEENLMKAIEAKKDAMLQSLWQINVVDIETTLSRVCQAVLKDPSVSKETLKLRAKALKKLGTIFQ 234 (261)
Q Consensus 160 ~~~k~~~~~--~~ee~~~~~~e~~~~~~L~~~w~~~~~DIe~tlr~vc~kVL~D~~V~~~~R~~RA~aL~~LG~if~ 234 (261)
++.++.... ..++. .++.....+.++++.|+++.+||++||+.||++| +|++|+. .|+.+|+
T Consensus 228 e~~~~~~~~~~~~e~~-~~~~~~~~~~~~~~~~~~s~~dies~l~~~~~~~-~d~~v~~-----------~i~~~~~ 291 (296)
T KOG0691|consen 228 EMEKLLEALGEALEKR-AEYASAKTGKSLDTLWHGSSFDIESTLIRVCQKI-KDPSVPL-----------LIFQRFK 291 (296)
T ss_pred HHHhhhcchHHHhhhc-hHHHHHhhcchhhhhhHhHHHHHHHHHHHHHHHh-cChHHHH-----------HHHHHHH
Confidence 999865431 11111 3344445678899999999999999999999999 9999997 6666666
No 5
>PHA03102 Small T antigen; Reviewed
Probab=90.83 E-value=0.11 Score=43.50 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=23.5
Q ss_pred CHHHHHHHhhChhhhhhhhchhhHHH
Q 024883 3 DAAAVFGMIFGSEYFEDYIGQLALAT 28 (261)
Q Consensus 3 Dp~~fF~~lFGse~f~~yIG~l~ia~ 28 (261)
+|.++|+++|||+.|++|+|..-...
T Consensus 79 ~~~~~f~~~fg~~~~~~~~~~~~~c~ 104 (153)
T PHA03102 79 VPSGYVGATFGDRVNALYCKDWDTCL 104 (153)
T ss_pred cHHHHhhhhcCCcchhhHhcchHHHH
Confidence 59999999999999999999977763
No 6
>PF03207 OspD: Borrelia outer surface protein D (OspD); InterPro: IPR004894 This is a family of outer surface proteins from Borrelia. The function of these proteins is unknown.
Probab=71.99 E-value=39 Score=28.95 Aligned_cols=31 Identities=13% Similarity=0.449 Sum_probs=24.6
Q ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHhcCCCC
Q 024883 183 DAMLQSLWQIN------VVDIETTLSRVCQAVLKDPS 213 (261)
Q Consensus 183 ~~~L~~~w~~~------~~DIe~tlr~vc~kVL~D~~ 213 (261)
...+...|+.+ +.|+|+||++.-+++-....
T Consensus 186 keaveiawkatv~akd~lidve~~vke~ldkiktet~ 222 (254)
T PF03207_consen 186 KEAVEIAWKATVEAKDKLIDVENTVKETLDKIKTETT 222 (254)
T ss_pred HHHHHHHHHHHhhhhhhHhhHHHHHHHHHHHHhhhcc
Confidence 34577889876 58999999999999876643
No 7
>PF09932 DUF2164: Uncharacterized conserved protein (DUF2164); InterPro: IPR018680 This family of various hypothetical prokaryotic proteins has no known function.
Probab=61.95 E-value=17 Score=26.90 Aligned_cols=43 Identities=9% Similarity=0.234 Sum_probs=33.0
Q ss_pred HHHhhchhhhcCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 024883 66 ILKNHLEPFVDGRADEFVKWANAEARRLSGAAFGEAMLHTIGYIYTRRAA 115 (261)
Q Consensus 66 ~L~~rL~~yv~g~~~~f~~~~~~Ea~~L~~~sFG~~iL~~IG~vY~~~A~ 115 (261)
.|.++|+.| |.+....|+-++..+-+=..|+..||-.|.|+|=
T Consensus 10 ~li~~iq~y-------f~~E~d~eiG~~~Ae~LLDF~~~elGp~~YNqgv 52 (76)
T PF09932_consen 10 ELIDKIQRY-------FAEELDEEIGDFEAEFLLDFFIEELGPHFYNQGV 52 (76)
T ss_pred HHHHHHHHH-------HHHHhcCcHHHhHHHHHHHHHHHHHhHHHHHHHH
Confidence 466777788 4455567777777777778899999999999863
No 8
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=60.04 E-value=1.4e+02 Score=28.97 Aligned_cols=67 Identities=22% Similarity=0.141 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH------HHHhchhhhccccccccc
Q 024883 183 DAMLQSLWQINVVDIETTLSRVCQAVLKDPSVSKETLKLRAKALKKLGT------IFQGAKAAYSRENSLRHE 249 (261)
Q Consensus 183 ~~~L~~~w~~~~~DIe~tlr~vc~kVL~D~~V~~~~R~~RA~aL~~LG~------if~~~~~~~~~~~~~~~~ 249 (261)
..-|..+....+++=-.-.-+-|++||.=..=..+-..+|++|+..+|+ .|+++..-.-.++++|.|
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~e 330 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAE 330 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 3445555555555555677889999999888888999999999999996 355555444444555443
No 9
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=50.09 E-value=36 Score=26.04 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHH---HhcCCCCCCHHHHHHHHHHHHHHHH
Q 024883 195 VDIETTLSRVCQ---AVLKDPSVSKETLKLRAKALKKLGT 231 (261)
Q Consensus 195 ~DIe~tlr~vc~---kVL~D~~V~~~~R~~RA~aL~~LG~ 231 (261)
.|-+..+++||. .+.+|.+||.+.|+.-.+|.-.|-+
T Consensus 9 ~d~~e~i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~ 48 (93)
T COG1698 9 NDSEEKINQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNN 48 (93)
T ss_pred hhhHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhC
Confidence 345555565553 4778999999999988888776643
No 10
>PF14891 Peptidase_M91: Effector protein
Probab=33.81 E-value=54 Score=27.56 Aligned_cols=31 Identities=26% Similarity=0.465 Sum_probs=28.3
Q ss_pred hcCchHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 024883 75 VDGRADEFVKWANAEARRLSGAAFGEAMLHTI 106 (261)
Q Consensus 75 v~g~~~~f~~~~~~Ea~~L~~~sFG~~iL~~I 106 (261)
|+|.. .|++.++.-++.|..++=|..||..|
T Consensus 7 ~~Gsd-~F~~rv~~~L~~i~ssptG~~mL~~l 37 (174)
T PF14891_consen 7 VEGSD-EFKQRVEAALDMIRSSPTGQQMLREL 37 (174)
T ss_pred ecCCH-HHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 45665 69999999999999999999999999
No 11
>PF03685 UPF0147: Uncharacterised protein family (UPF0147); InterPro: IPR005354 The proteins in this entry are functionally uncharacterised.; PDB: 2QZG_C 2QSB_A.
Probab=33.50 E-value=69 Score=24.25 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=23.4
Q ss_pred HHHHHHHHHH---HHhcCCCCCCHHHHHHHHHHHHHHHH
Q 024883 196 DIETTLSRVC---QAVLKDPSVSKETLKLRAKALKKLGT 231 (261)
Q Consensus 196 DIe~tlr~vc---~kVL~D~~V~~~~R~~RA~aL~~LG~ 231 (261)
|-+.++++|+ +.+.+|.+||...|+.=-+|...|.+
T Consensus 3 ~~e~~i~~~~~~L~~I~~D~sVPRNIRr~a~ea~~~L~~ 41 (85)
T PF03685_consen 3 DNEEKIKQAIQMLERIINDTSVPRNIRRAAEEAKEILNN 41 (85)
T ss_dssp HHHHHHHHHHHHHHHHHT-TTS-HHHHHHHHHHHHHCT-
T ss_pred cHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhC
Confidence 3445555554 56788999999999888787766643
No 12
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=33.47 E-value=78 Score=24.13 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH-HHHHHHHHHHHHHHhchhh
Q 024883 190 WQINVVDIETTLSRVCQAVLKDPSVSKETLK-LRAKALKKLGTIFQGAKAA 239 (261)
Q Consensus 190 w~~~~~DIe~tlr~vc~kVL~D~~V~~~~R~-~RA~aL~~LG~if~~~~~~ 239 (261)
|.-+.|. -.+||++|+.++.+.+|+..... -++-|=.++|++...+...
T Consensus 19 fRRs~~~-k~~ikkli~~~~~~qsv~~~v~i~v~g~aKvFVGEiVE~A~~V 68 (90)
T PF04719_consen 19 FRRSSFN-KAAIKKLINQVLGNQSVSQNVVIAVAGIAKVFVGEIVEEARDV 68 (90)
T ss_dssp HHH-----HHHHHHHHHHHHS-S---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCC-HHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433 24899999999999999997654 4566667777777766543
No 13
>PRK04330 hypothetical protein; Provisional
Probab=32.41 E-value=96 Score=23.64 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=26.4
Q ss_pred HHHHHHHHHH---HHhcCCCCCCHHHHHHHHHHHHHHHH
Q 024883 196 DIETTLSRVC---QAVLKDPSVSKETLKLRAKALKKLGT 231 (261)
Q Consensus 196 DIe~tlr~vc---~kVL~D~~V~~~~R~~RA~aL~~LG~ 231 (261)
|-+.++++++ +.+.+|.+||...|+.=.+|.-.|.+
T Consensus 6 ~~e~~ik~~~~~L~~I~~D~sVPRNIRraa~ea~~~L~~ 44 (88)
T PRK04330 6 DNEEKIKQAIQMLEEIINDTSVPRNIRRAATEAKEILLN 44 (88)
T ss_pred chHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhC
Confidence 4445555554 46789999999999988888877643
No 14
>COG5460 Uncharacterized conserved protein [Function unknown]
Probab=30.93 E-value=1.2e+02 Score=22.59 Aligned_cols=41 Identities=12% Similarity=0.272 Sum_probs=29.1
Q ss_pred HHhhchhhhcCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 024883 67 LKNHLEPFVDGRADEFVKWANAEARRLSGAAFGEAMLHTIGYIYTRRA 114 (261)
Q Consensus 67 L~~rL~~yv~g~~~~f~~~~~~Ea~~L~~~sFG~~iL~~IG~vY~~~A 114 (261)
|.-||+.|.. ...+.|+..+--+-|=..|-.-+|..|.|++
T Consensus 14 lv~~i~dYL~-------~E~~~evg~~~Ae~fleFis~elGpyfYNQG 54 (82)
T COG5460 14 LVTRIRDYLT-------RETETEVGKFDAEFFLEFISGELGPYFYNQG 54 (82)
T ss_pred HHHHHHHHHH-------HHHHHHHHHhhHHHHHHHHHhhhhHHHHhhh
Confidence 4455566644 3345677888878888888888899988874
No 15
>COG3924 Predicted membrane protein [Function unknown]
Probab=28.73 E-value=65 Score=23.74 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=25.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHh-hhcccccchhhHHH
Q 024883 95 GAAFGEAMLHTIGYIYTRRAAKEL-GKDKRYMKVPFLAE 132 (261)
Q Consensus 95 ~~sFG~~iL~~IG~vY~~~A~~~l-~~~~~~~G~~~~~~ 132 (261)
.=.||..||..+||.-.. |+ |..+.+.|++-+++
T Consensus 13 ~WAlgLtllYl~gW~v~A----Ylp~~t~G~~gfP~WFE 47 (80)
T COG3924 13 RWALGLTLLYLAGWLVAA----YLPGNTPGFTGFPLWFE 47 (80)
T ss_pred HHHHHHHHHHHHHHHHHH----hCCCCCCCCCCChHHHH
Confidence 356999999999998543 55 55566788887774
No 16
>PF10653 Phage-A118_gp45: Protein gp45 of Bacteriophage A118; InterPro: IPR018915 The proteins in this entry represents Gp45 in Listeria phage A118 (Bacteriophage A118) and related proteins; Gp45 is thought to have a function in the phage tail-fibre system.
Probab=21.99 E-value=36 Score=23.38 Aligned_cols=16 Identities=44% Similarity=0.669 Sum_probs=13.7
Q ss_pred hChhhhhhhhchhhHH
Q 024883 12 FGSEYFEDYIGQLALA 27 (261)
Q Consensus 12 FGse~f~~yIG~l~ia 27 (261)
=|+|++.|||-+|.+-
T Consensus 40 tgcekm~dyieelklk 55 (62)
T PF10653_consen 40 TGCEKMTDYIEELKLK 55 (62)
T ss_pred hhhHHHHHHHHHHhhc
Confidence 3889999999998875
No 17
>PRK10626 hypothetical protein; Provisional
Probab=20.99 E-value=3e+02 Score=24.80 Aligned_cols=48 Identities=21% Similarity=0.359 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhchhhhc--Cc----hHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 024883 59 REEKLITILKNHLEPFVD--GR----ADEFVKWANAEARRLSGAAFGEAMLHTI 106 (261)
Q Consensus 59 R~~~La~~L~~rL~~yv~--g~----~~~f~~~~~~Ea~~L~~~sFG~~iL~~I 106 (261)
|+.+|=..|..|++..++ +| ...|.+.++.|-+.|...|-|.-|..+|
T Consensus 119 rl~~l~~~l~~q~~~i~e~r~d~~~f~~~~~~~ve~~~~qlv~~s~G~il~ds~ 172 (239)
T PRK10626 119 RLTKLDAQLKQQMNRIIEHRSDGLTFHHQAIDQVEADGQQLVNQAMGGILQDSI 172 (239)
T ss_pred HHHHHHHHHHHHHHHHHHccCCceeehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777778877776655 33 3468888999999999998888765444
Done!