Query 024883
Match_columns 261
No_of_seqs 116 out of 280
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 16:04:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024883.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024883hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q6q_A Spindle POLE BODY compo 45.5 74 0.0025 22.1 6.7 40 47-91 7-48 (74)
2 2qzg_A Conserved uncharacteriz 42.3 11 0.00037 28.0 1.7 41 189-229 4-47 (94)
3 1ceu_A Protein (HIV-1 regulato 34.8 44 0.0015 21.9 3.5 29 80-108 16-44 (51)
4 1gs9_A Apolipoprotein E, APOE4 28.5 76 0.0026 25.5 4.9 50 64-123 75-124 (165)
5 3cjl_A Domain of unknown funct 28.3 1.1E+02 0.0039 22.1 5.3 34 204-237 33-66 (88)
6 1u5e_A SRC-associated adaptor 25.4 1.4E+02 0.0047 24.5 6.1 46 196-241 5-53 (211)
7 3r2p_A Apolipoprotein A-I; amp 25.2 1.1E+02 0.0037 24.7 5.3 42 58-103 85-128 (185)
8 2qsb_A UPF0147 protein TA0600; 24.4 1.5E+02 0.0051 21.6 5.2 26 204-229 18-43 (89)
9 2kix_A BM2 protein; channel, t 21.7 67 0.0023 18.5 2.3 21 91-111 6-26 (33)
10 1nfn_A Apolipoprotein E3; lipi 21.7 1.1E+02 0.0038 25.0 4.7 40 64-103 75-123 (191)
11 1gs9_A Apolipoprotein E, APOE4 21.3 1.5E+02 0.0051 23.7 5.3 36 58-93 102-144 (165)
No 1
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=45.49 E-value=74 Score=22.10 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=26.9
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHhhchhhhcCchHHHHHHHHHHHH
Q 024883 47 KIQEKMRAMQ--KEREEKLITILKNHLEPFVDGRADEFVKWANAEAR 91 (261)
Q Consensus 47 ~~~~~~~~~q--~~R~~~La~~L~~rL~~yv~g~~~~f~~~~~~Ea~ 91 (261)
++..++.+.| ..|...|+..|+.+|..|++ ...+++.+..
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiKYte-----lnKKLe~~~~ 48 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLEKYVD-----ITKKLEDQNL 48 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 4444444444 46889999999999999987 3344555443
No 2
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=42.31 E-value=11 Score=28.00 Aligned_cols=41 Identities=12% Similarity=0.278 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHH---HHhcCCCCCCHHHHHHHHHHHHHH
Q 024883 189 LWQINVVDIETTLSRVC---QAVLKDPSVSKETLKLRAKALKKL 229 (261)
Q Consensus 189 ~w~~~~~DIe~tlr~vc---~kVL~D~~V~~~~R~~RA~aL~~L 229 (261)
|+..-+.+-+.++++++ +.+.+|.+||...|+.=-++.-.|
T Consensus 4 ~~~~~~~e~e~~ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L 47 (94)
T 2qzg_A 4 MFSAKKLSPADKLKNISSMLEEIVEDTTVPRNIRAAADNAKNAL 47 (94)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHT
T ss_pred chhhhhcchHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHH
Confidence 34444455555666554 456689999999998877776655
No 3
>1ceu_A Protein (HIV-1 regulatory protein N-terminal domain VPR); helical domain, amphipaticity, viral protein; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1fi0_A
Probab=34.79 E-value=44 Score=21.90 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 024883 80 DEFVKWANAEARRLSGAAFGEAMLHTIGY 108 (261)
Q Consensus 80 ~~f~~~~~~Ea~~L~~~sFG~~iL~~IG~ 108 (261)
+.|...+-.|++.=+.-.|...+||.+|.
T Consensus 16 ~eW~le~LeElk~EAvrHFpr~~L~~lgq 44 (51)
T 1ceu_A 16 NDWTLELLEELKNEAVRHFPRIWLHSLGQ 44 (51)
T ss_dssp SHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 46888888999988999999999999995
No 4
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=28.53 E-value=76 Score=25.51 Aligned_cols=50 Identities=16% Similarity=0.064 Sum_probs=27.3
Q ss_pred HHHHHhhchhhhcCchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhccc
Q 024883 64 ITILKNHLEPFVDGRADEFVKWANAEARRLSGAAFGEAMLHTIGYIYTRRAAKELGKDKR 123 (261)
Q Consensus 64 a~~L~~rL~~yv~g~~~~f~~~~~~Ea~~L~~~sFG~~iL~~IG~vY~~~A~~~l~~~~~ 123 (261)
+..|..+|.||.+ +|...+..+.+.|.. -|.....-+..+...|+..-..
T Consensus 75 ~~~l~~~L~P~t~----el~~~l~~~~e~Lr~------~L~~d~EelR~~l~p~~~el~~ 124 (165)
T 1gs9_A 75 KSELEEQLTPVAE----ETRARLSKELQAAQA------RLGADMEDVRGRLVQYRGEVQA 124 (165)
T ss_dssp HHHHTTSCCCCCS----HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccchHH----HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999986 344445555444432 1333333334455555544443
No 5
>3cjl_A Domain of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Pectobacterium atrosepticum SCRI1043}
Probab=28.30 E-value=1.1e+02 Score=22.11 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=27.4
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhch
Q 024883 204 VCQAVLKDPSVSKETLKLRAKALKKLGTIFQGAK 237 (261)
Q Consensus 204 vc~kVL~D~~V~~~~R~~RA~aL~~LG~if~~~~ 237 (261)
+.++|=.+.+.+.++...=|-||+++|.+|..-.
T Consensus 33 Ive~~~~~~~~~~~~a~af~vGLKLfgevml~~r 66 (88)
T 3cjl_A 33 LLEKVDGKMDMTPEQTQAFMVGLKLFGEVMMQQR 66 (88)
T ss_dssp HHHHHTTTSSSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 4455556677889999999999999999998543
No 6
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=25.42 E-value=1.4e+02 Score=24.54 Aligned_cols=46 Identities=24% Similarity=0.279 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHh---cCCCCCCHHHHHHHHHHHHHHHHHHHhchhhhc
Q 024883 196 DIETTLSRVCQAV---LKDPSVSKETLKLRAKALKKLGTIFQGAKAAYS 241 (261)
Q Consensus 196 DIe~tlr~vc~kV---L~D~~V~~~~R~~RA~aL~~LG~if~~~~~~~~ 241 (261)
||...|.++|.=| |+.+.+++..|-+|-.=|..++.+......+..
T Consensus 5 ~~~~l~~~~~~~~~~~l~~e~ls~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (211)
T 1u5e_A 5 EIRNLLADVETFVADTLKGENLSKKAKEKRESLIKKIKDVKSVYLQEFQ 53 (211)
T ss_dssp HHHHHHHHHHHHHHTTTTTCBCCHHHHHHHHHHHHHHHHHGGGGTGGGC
T ss_pred HHHHHHHHHHHHHHHhhcchhcCHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 6777788888766 899999999999999999998888887777666
No 7
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=25.24 E-value=1.1e+02 Score=24.68 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhchhhhcCchHHHHHHHHHHHHHHh--hhhhhHHHH
Q 024883 58 EREEKLITILKNHLEPFVDGRADEFVKWANAEARRLS--GAAFGEAML 103 (261)
Q Consensus 58 ~R~~~La~~L~~rL~~yv~g~~~~f~~~~~~Ea~~L~--~~sFG~~iL 103 (261)
.|+.+=.+-++.||.||.+ .+...+...+++|. .++|+.++-
T Consensus 85 ~~l~kdlee~r~~l~P~~~----e~~~~~~~~~e~lr~~l~Py~~el~ 128 (185)
T 3r2p_A 85 QEMSKDLEEVKAKVQPYLD----DFQKKWQEEMELYRQKVEPLRAELQ 128 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444445568888999987 58888888888774 556665553
No 8
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Probab=24.37 E-value=1.5e+02 Score=21.59 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=20.6
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHH
Q 024883 204 VCQAVLKDPSVSKETLKLRAKALKKL 229 (261)
Q Consensus 204 vc~kVL~D~~V~~~~R~~RA~aL~~L 229 (261)
+-+.+.+|.+||...|+.=.++.-.|
T Consensus 18 ~L~~I~~D~sVPRNIRraA~ea~~~L 43 (89)
T 2qsb_A 18 LLDELSQDITVPKNVRKVAQDSKAKL 43 (89)
T ss_dssp HHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHHH
Confidence 44567789999999998877777665
No 9
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=21.67 E-value=67 Score=18.54 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=17.1
Q ss_pred HHHhhhhhhHHHHHHHHHHHH
Q 024883 91 RRLSGAAFGEAMLHTIGYIYT 111 (261)
Q Consensus 91 ~~L~~~sFG~~iL~~IG~vY~ 111 (261)
+-|...||=..-||-|+|+--
T Consensus 6 qilsi~sfilsalhf~awtig 26 (33)
T 2kix_A 6 QILSISSFILSALHFIAWTIG 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457788999999999999854
No 10
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=21.66 E-value=1.1e+02 Score=25.02 Aligned_cols=40 Identities=10% Similarity=0.138 Sum_probs=21.5
Q ss_pred HHHHHhhchhhhcC-------chHHHHHHHHHHHHHHh--hhhhhHHHH
Q 024883 64 ITILKNHLEPFVDG-------RADEFVKWANAEARRLS--GAAFGEAML 103 (261)
Q Consensus 64 a~~L~~rL~~yv~g-------~~~~f~~~~~~Ea~~L~--~~sFG~~iL 103 (261)
+..|+.+|.||.+. +.+.+...+..++++|+ .++|..++-
T Consensus 75 ~~~l~~qL~P~~~e~~~~l~~~~e~lr~~l~kdlEelr~kL~P~~eEL~ 123 (191)
T 1nfn_A 75 KSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQ 123 (191)
T ss_dssp HHHHTTC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 56788888899762 34567777877887773 455555553
No 11
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=21.25 E-value=1.5e+02 Score=23.72 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhchhhhc-------CchHHHHHHHHHHHHHH
Q 024883 58 EREEKLITILKNHLEPFVD-------GRADEFVKWANAEARRL 93 (261)
Q Consensus 58 ~R~~~La~~L~~rL~~yv~-------g~~~~f~~~~~~Ea~~L 93 (261)
.++....+.|+.+|.||++ ...+.++.++..-+++|
T Consensus 102 ~~L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~eeL 144 (165)
T 1gs9_A 102 ARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKL 144 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777765 12344555555555554
Done!