Query 024883
Match_columns 261
No_of_seqs 116 out of 280
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 16:04:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024883.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024883hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nexa1 a.157.1.1 (A:116-185) 24.6 37 0.0027 21.7 3.7 31 183-213 14-47 (70)
2 d1gs9a_ a.24.1.1 (A:) Apolipop 24.2 48 0.0035 23.7 4.8 36 59-94 82-124 (144)
3 d2vqca1 a.4.5.78 (A:4-73) F-11 15.6 48 0.0035 20.7 2.5 17 192-208 35-51 (70)
4 d2hsga1 a.35.1.5 (A:2-58) Gluc 14.2 76 0.0055 19.3 3.2 27 205-231 18-45 (57)
5 d2qzga1 a.29.14.1 (A:4-91) Unc 13.6 81 0.0059 21.2 3.4 22 206-227 18-39 (88)
6 d1fs1b1 a.157.1.1 (B:86-140) C 13.0 78 0.0057 19.1 3.0 26 183-208 13-38 (55)
7 d1qpza1 a.35.1.5 (A:2-58) Puri 12.3 73 0.0053 19.4 2.7 27 205-231 17-44 (57)
8 d1ak0a_ a.124.1.2 (A:) P1 nucl 12.2 1.2E+02 0.0085 23.7 4.8 40 196-239 85-124 (264)
9 d1xoub_ a.231.1.2 (B:) EspA ch 11.8 1.1E+02 0.008 19.6 3.5 34 61-94 48-81 (84)
10 d2qsba1 a.29.14.1 (A:2-86) Unc 11.6 2E+02 0.015 18.9 5.1 23 206-228 16-38 (85)
No 1
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.58 E-value=37 Score=21.74 Aligned_cols=31 Identities=19% Similarity=0.437 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCC
Q 024883 183 DAMLQSLWQINVVDIETTLSRVCQAV---LKDPS 213 (261)
Q Consensus 183 ~~~L~~~w~~~~~DIe~tlr~vc~kV---L~D~~ 213 (261)
+.+.+.+.+.+-+||..-+.-.|++| +.+++
T Consensus 14 ~~L~~li~AAnyL~I~~Ll~l~c~~vA~~ikgkt 47 (70)
T d1nexa1 14 EMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRS 47 (70)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccCC
Confidence 55677888999999999999999999 66665
No 2
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=24.23 E-value=48 Score=23.70 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhchhhhc-------CchHHHHHHHHHHHHHHh
Q 024883 59 REEKLITILKNHLEPFVD-------GRADEFVKWANAEARRLS 94 (261)
Q Consensus 59 R~~~La~~L~~rL~~yv~-------g~~~~f~~~~~~Ea~~L~ 94 (261)
|...-...|+.+|.||++ ...+.++..+.+-+++|.
T Consensus 82 ~l~~~lee~r~kl~~~~eel~~~~~~~~ee~r~~l~p~~eel~ 124 (144)
T d1gs9a_ 82 RLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLR 124 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666777777765 223445666555555543
No 3
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=15.61 E-value=48 Score=20.72 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 024883 192 INVVDIETTLSRVCQAV 208 (261)
Q Consensus 192 ~~~~DIe~tlr~vc~kV 208 (261)
-+.+.|+.+||..|++-
T Consensus 35 ~~ayniqr~l~~ice~h 51 (70)
T d2vqca1 35 PSAYNIQRALKAICERH 51 (70)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred chHhHHHHHHHHHHhcC
Confidence 45678999999999984
No 4
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=14.18 E-value=76 Score=19.30 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=21.1
Q ss_pred HHHhcCC-CCCCHHHHHHHHHHHHHHHH
Q 024883 205 CQAVLKD-PSVSKETLKLRAKALKKLGT 231 (261)
Q Consensus 205 c~kVL~D-~~V~~~~R~~RA~aL~~LG~ 231 (261)
..++|++ +.|+.++|.+=-++...||-
T Consensus 18 VSr~Ln~~~~Vs~~tr~rV~~aa~~lgY 45 (57)
T d2hsga1 18 VSRVVNGNPNVKPSTRKKVLETIERLGY 45 (57)
T ss_dssp HHHHHTTCTTSCHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCCcCCHHHHHHHHHHHHHHCc
Confidence 3566777 57999999988888888774
No 5
>d2qzga1 a.29.14.1 (A:4-91) Uncharacterized protein MMP1188 {Methanococcus maripaludis [TaxId: 39152]}
Probab=13.55 E-value=81 Score=21.20 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=14.5
Q ss_pred HHhcCCCCCCHHHHHHHHHHHH
Q 024883 206 QAVLKDPSVSKETLKLRAKALK 227 (261)
Q Consensus 206 ~kVL~D~~V~~~~R~~RA~aL~ 227 (261)
+.+-.|.+||...|+.--++..
T Consensus 18 ~qI~~D~sVPRNIRr~a~~~~~ 39 (88)
T d2qzga1 18 EEIVEDTTVPRNIRAAADNAKN 39 (88)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHH
T ss_pred HHHhcCCCCChHHHHHHHHHHH
Confidence 4556788888888865444433
No 6
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.98 E-value=78 Score=19.11 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024883 183 DAMLQSLWQINVVDIETTLSRVCQAV 208 (261)
Q Consensus 183 ~~~L~~~w~~~~~DIe~tlr~vc~kV 208 (261)
+.+.+.+.+.+-+||+.-+.-.|++|
T Consensus 13 ~~Lf~Li~AAnyL~I~~Lldl~c~~v 38 (55)
T d1fs1b1 13 GTLFELILAANYLDIKGLLDVTCKTV 38 (55)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 55677888999999999999999988
No 7
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=12.27 E-value=73 Score=19.40 Aligned_cols=27 Identities=26% Similarity=0.208 Sum_probs=20.7
Q ss_pred HHHhcCC-CCCCHHHHHHHHHHHHHHHH
Q 024883 205 CQAVLKD-PSVSKETLKLRAKALKKLGT 231 (261)
Q Consensus 205 c~kVL~D-~~V~~~~R~~RA~aL~~LG~ 231 (261)
..++|++ ++|++++|.+=-++...||-
T Consensus 17 VSr~ln~~~~vs~~tr~rV~~~a~~lgY 44 (57)
T d1qpza1 17 VSHVINKTRFVAEETRNAVWAAIKELHY 44 (57)
T ss_dssp HHHHHHTCSCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCCccCHHHHHHHHHHHHHHCC
Confidence 3466777 57999999988888887774
No 8
>d1ak0a_ a.124.1.2 (A:) P1 nuclease {Penicillium citrinum [TaxId: 5077]}
Probab=12.24 E-value=1.2e+02 Score=23.70 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhchhh
Q 024883 196 DIETTLSRVCQAVLKDPSVSKETLKLRAKALKKLGTIFQGAKAA 239 (261)
Q Consensus 196 DIe~tlr~vc~kVL~D~~V~~~~R~~RA~aL~~LG~if~~~~~~ 239 (261)
+|-+.+.+ |.++|.|++-+.. .|+.||++|...+-...++
T Consensus 85 ~i~~ai~~-~~~~l~~~~~s~~---~~~~aL~~LvHlvGDiHQP 124 (264)
T d1ak0a_ 85 CSISAIAN-YTQRVSDSSLSSE---NHAEALRFLVHFIGDMTQP 124 (264)
T ss_dssp CHHHHHHH-HHHHHTCTTSCHH---HHHHHHHHHHHHHHHTTSG
T ss_pred cHHHHHHH-HHHHHhcCCCChH---HHHHHHHHHHHHHhhcccc
Confidence 45555666 5567888887765 4799999999999888776
No 9
>d1xoub_ a.231.1.2 (B:) EspA chaperone CesA {Escherichia coli [TaxId: 562]}
Probab=11.83 E-value=1.1e+02 Score=19.57 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=24.0
Q ss_pred HHHHHHHHhhchhhhcCchHHHHHHHHHHHHHHh
Q 024883 61 EKLITILKNHLEPFVDGRADEFVKWANAEARRLS 94 (261)
Q Consensus 61 ~~La~~L~~rL~~yv~g~~~~f~~~~~~Ea~~L~ 94 (261)
-.-|++|...|+.|+-|.+...-...-..++.|-
T Consensus 48 pqaaeklnkliegyt~geerklydsalskiekli 81 (84)
T d1xoub_ 48 PQAAEKLNKLIEGYTYGEERKLYDSALSKIEKLI 81 (84)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 4567888888999998887655555555555554
No 10
>d2qsba1 a.29.14.1 (A:2-86) Uncharacterized protein Ta0600 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=11.65 E-value=2e+02 Score=18.90 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=14.0
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHH
Q 024883 206 QAVLKDPSVSKETLKLRAKALKK 228 (261)
Q Consensus 206 ~kVL~D~~V~~~~R~~RA~aL~~ 228 (261)
+.+-.|.+||+..|+.=-++.-.
T Consensus 16 ~~I~~D~sVPRNIRr~a~e~~~~ 38 (85)
T d2qsba1 16 DELSQDITVPKNVRKVAQDSKAK 38 (85)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCChHHHHHHHHHHHH
Confidence 34557778887777754444433
Done!