BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024884
(261 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely
Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
RECRUITS Transcription Co-Factors
pdb|3KOV|B Chain B, Structure Of Mef2a Bound To Dna Reveals A Completely
Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
RECRUITS Transcription Co-Factors
pdb|3KOV|I Chain I, Structure Of Mef2a Bound To Dna Reveals A Completely
Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
RECRUITS Transcription Co-Factors
pdb|3KOV|J Chain J, Structure Of Mef2a Bound To Dna Reveals A Completely
Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
RECRUITS Transcription Co-Factors
pdb|3P57|A Chain A, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|B Chain B, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|C Chain C, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|D Chain D, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|I Chain I, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|J Chain J, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
Length = 90
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 6 LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVK 53
+++ I E+ R TF KRK L+KKAYE + LCD E+ +II+ K
Sbjct: 5 IQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNK 52
>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna
pdb|1EGW|B Chain B, Crystal Structure Of Mef2a Core Bound To Dna
pdb|1EGW|C Chain C, Crystal Structure Of Mef2a Core Bound To Dna
pdb|1EGW|D Chain D, Crystal Structure Of Mef2a Core Bound To Dna
Length = 77
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 6 LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVK 53
+++ I E+ R TF KRK L+KKAYE + LCD E+ +II+ K
Sbjct: 5 IQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNK 52
>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases
To Myocyte Enhancer Factor-2 By Small Molecules
pdb|3MU6|B Chain B, Inhibiting The Binding Of Class Iia Histone Deacetylases
To Myocyte Enhancer Factor-2 By Small Molecules
pdb|3MU6|C Chain C, Inhibiting The Binding Of Class Iia Histone Deacetylases
To Myocyte Enhancer Factor-2 By Small Molecules
pdb|3MU6|D Chain D, Inhibiting The Binding Of Class Iia Histone Deacetylases
To Myocyte Enhancer Factor-2 By Small Molecules
Length = 71
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 6 LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVK 53
+++ I E+ R TF KRK L+KKAYE + LCD E+ +II+ K
Sbjct: 5 IQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNK 52
>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone
Deacetylases By Myocyte Enhancer Factor-2
pdb|1TQE|Q Chain Q, Mechanism Of Recruitment Of Class Ii Histone
Deacetylases By Myocyte Enhancer Factor-2
pdb|1TQE|R Chain R, Mechanism Of Recruitment Of Class Ii Histone
Deacetylases By Myocyte Enhancer Factor-2
pdb|1TQE|S Chain S, Mechanism Of Recruitment Of Class Ii Histone
Deacetylases By Myocyte Enhancer Factor-2
Length = 93
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 1 MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPG 51
M + +++ I ++ R TF KRK L+KKAYE + LCD E+ +II+
Sbjct: 1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSA 51
>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of
Histone Deacetylases By Myocyte Enhancer Factor-2
pdb|1N6J|B Chain B, Structural Basis Of Sequence-Specific Recruitment Of
Histone Deacetylases By Myocyte Enhancer Factor-2
Length = 93
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 6 LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPG 51
+++ I ++ R TF KRK L+KKAYE + LCD E+ +II+
Sbjct: 5 IQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSA 50
>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The
Transcription Factor Mef2a With A 20mer Oligonucleotide
pdb|1C7U|B Chain B, Complex Of The Dna Binding Core Domain Of The
Transcription Factor Mef2a With A 20mer Oligonucleotide
Length = 85
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 6 LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVK 53
+++ I E+ R TF KRK L+KKAYE + L D E+ +II+ K
Sbjct: 5 IQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNK 52
>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna
Complex
pdb|1K6O|C Chain C, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna
Complex
Length = 103
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 6 LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIII 47
+K+E I ++ R TF KRK ++KKAYE +TL +V +++
Sbjct: 14 IKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLV 55
>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific
Sre Dna
pdb|1SRS|B Chain B, Serum Response Factor (Srf) Core Complexed With Specific
Sre Dna
pdb|1HBX|A Chain A, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|B Chain B, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|D Chain D, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|E Chain E, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
Length = 92
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 6 LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIII 47
+K+E I ++ R TF KRK ++KKAYE +TL +V +++
Sbjct: 15 IKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLV 56
>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
Crystal Structure
pdb|1MNM|B Chain B, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
Crystal Structure
Length = 100
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 29/42 (69%)
Query: 6 LKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIII 47
++++ I+++ R TF KRK+ ++KKA+E + L +V +++
Sbjct: 21 IEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLV 62
>pdb|2BEM|A Chain A, Crystal Structure Of The Serratia Marcescens
Chitin-Binding Protein Cbp21
pdb|2BEM|B Chain B, Crystal Structure Of The Serratia Marcescens
Chitin-Binding Protein Cbp21
pdb|2BEM|C Chain C, Crystal Structure Of The Serratia Marcescens
Chitin-Binding Protein Cbp21
pdb|2LHS|A Chain A, Structure Of The Chitin Binding Protein 21 (Cbp21)
Length = 170
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Query: 136 KMILSTMDDKLKAADRKLNMIKGDQNLKNKAASRKLDHDHSNDAKSLVNSQPGYEVSQKL 195
K +D + KLN+ G + K +R HS + ++P ++ SQ L
Sbjct: 53 KSTFFELDQQTPTRWNKLNLKTGPNSFTWKLTAR-----HSTTSWRYFITKPNWDASQPL 107
Query: 196 PSDSSFMEIQCGGESGGTIPFTPLQRQIN 224
S + C GG IP + Q N
Sbjct: 108 TRASFDLTPFCQFNDGGAIPAAQVTHQCN 136
>pdb|2BEN|A Chain A, Crystal Structure Of The Serratia Marcescens
Chitin-Binding Protein Cbp21 Y54a Mutant.
pdb|2BEN|B Chain B, Crystal Structure Of The Serratia Marcescens
Chitin-Binding Protein Cbp21 Y54a Mutant
Length = 170
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Query: 136 KMILSTMDDKLKAADRKLNMIKGDQNLKNKAASRKLDHDHSNDAKSLVNSQPGYEVSQKL 195
K +D + KLN+ G + K +R HS + ++P ++ SQ L
Sbjct: 53 KSTFFELDQQTPTRWNKLNLKTGPNSFTWKLTAR-----HSTTSWRYFITKPNWDASQPL 107
Query: 196 PSDSSFMEIQCGGESGGTIPFTPLQRQIN 224
S + C GG IP + Q N
Sbjct: 108 TRASFDLTPFCQFNDGGAIPAAQVTHQCN 136
>pdb|2F2H|A Chain A, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|B Chain B, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|C Chain C, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|D Chain D, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|E Chain E, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|F Chain F, Structure Of The Yici Thiosugar Michaelis Complex
Length = 773
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 175 HSNDAKSLVNSQPGYEVSQKLPS-DSSFMEIQCGGESGGTIPFTPLQRQINWNSSLTMSP 233
H A L N Q G+E ++P+ D S + +G TI T NW L
Sbjct: 683 HEGTAFHLFNLQDGHEAVCEVPAADGSVIFTLKAARTGNTITVTGAGEAKNWTLCLRNVV 742
Query: 234 ASSGVYDGNAAQAKKS 249
+G+ DG+ A++++
Sbjct: 743 KVNGLQDGSQAESEQG 758
>pdb|1XSI|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSK|A Chain A, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|B Chain B, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|C Chain C, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|D Chain D, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|E Chain E, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|F Chain F, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
Length = 778
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 175 HSNDAKSLVNSQPGYEVSQKLPS-DSSFMEIQCGGESGGTIPFTPLQRQINWNSSLTMSP 233
H A L N Q G+E ++P+ D S + +G TI T NW L
Sbjct: 683 HEGTAFHLFNLQDGHEAVCEVPAADGSVIFTLKAARTGNTITVTGAGEAKNWTLCLRNVV 742
Query: 234 ASSGVYDGNAAQAKKS 249
+G+ DG+ A++++
Sbjct: 743 KVNGLQDGSQAESEQG 758
>pdb|1WE5|A Chain A, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|B Chain B, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|C Chain C, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|D Chain D, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|E Chain E, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|F Chain F, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
Length = 772
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 175 HSNDAKSLVNSQPGYEVSQKLPS-DSSFMEIQCGGESGGTIPFTPLQRQINWNSSLTMSP 233
H A L N Q G+E ++P+ D S + +G TI T NW L
Sbjct: 683 HEGTAFHLFNLQDGHEAVCEVPAADGSVIFTLKAARTGNTITVTGAGEAKNWTLCLRNVV 742
Query: 234 ASSGVYDGNAAQAKKS 249
+G+ DG+ A++++
Sbjct: 743 KVNGLQDGSQAESEQG 758
>pdb|2OAP|1 Chain 1, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Amp-Pnp
pdb|2OAP|2 Chain 2, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Amp-Pnp
pdb|2OAQ|1 Chain 1, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Phosphate
pdb|2OAQ|2 Chain 2, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Phosphate
Length = 511
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 32/76 (42%)
Query: 133 DQLKMILSTMDDKLKAADRKLNMIKGDQNLKNKAASRKLDHDHSNDAKSLVNSQPGYEVS 192
D LK IL D + +R +++ + L + A D+ +S L GY +
Sbjct: 76 DDLKKILVLQDVSVDLEERAEVLVRAIEKLSKEYAVSFTDNFYSRXLYYLFRDFFGYGLI 135
Query: 193 QKLPSDSSFMEIQCGG 208
L D++ +I C G
Sbjct: 136 DPLXEDTNVEDISCDG 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.128 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,423,791
Number of Sequences: 62578
Number of extensions: 284322
Number of successful extensions: 575
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 563
Number of HSP's gapped (non-prelim): 23
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)