Query 024884
Match_columns 261
No_of_seqs 220 out of 1453
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 08:10:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024884.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024884hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 5.5E-35 1.2E-39 249.4 5.3 154 1-161 1-176 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 2.1E-31 4.5E-36 195.3 3.8 74 2-82 1-74 (77)
3 cd00266 MADS_SRF_like SRF-like 100.0 1.2E-29 2.6E-34 188.6 4.3 75 2-82 1-75 (83)
4 smart00432 MADS MADS domain. 99.9 1.8E-28 4E-33 170.0 3.9 55 2-56 1-55 (59)
5 cd00120 MADS MADS: MCM1, Agamo 99.9 5.8E-28 1.3E-32 167.7 3.6 55 2-56 1-55 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 6.4E-26 1.4E-30 152.5 -1.2 48 9-56 1-48 (51)
7 KOG0015 Regulator of arginine 99.7 3.6E-18 7.8E-23 150.6 2.6 81 2-82 63-145 (338)
8 COG5068 ARG80 Regulator of arg 99.3 9.2E-13 2E-17 121.5 3.2 59 1-59 81-140 (412)
9 PF01486 K-box: K-box region; 99.2 7.8E-11 1.7E-15 90.5 9.6 97 76-181 1-97 (100)
10 PF06698 DUF1192: Protein of u 89.4 0.89 1.9E-05 31.4 4.5 33 122-154 13-45 (59)
11 PF10584 Proteasome_A_N: Prote 76.1 0.43 9.3E-06 26.7 -1.2 13 44-56 4-16 (23)
12 PRK04098 sec-independent trans 56.6 15 0.00032 30.5 3.6 31 42-81 14-44 (158)
13 PRK01919 tatB sec-independent 53.1 18 0.00039 30.3 3.6 23 133-155 57-79 (169)
14 KOG4252 GTP-binding protein [S 35.0 34 0.00074 29.4 2.5 31 38-81 90-120 (246)
15 PF10491 Nrf1_DNA-bind: NLS-bi 34.8 63 0.0014 28.0 4.1 51 26-80 35-89 (214)
16 COG0495 LeuS Leucyl-tRNA synth 33.2 40 0.00087 35.2 3.2 34 44-82 38-72 (814)
17 KOG4637 Adaptor for phosphoino 33.1 31 0.00068 32.6 2.2 46 33-82 367-414 (464)
18 KOG4311 Histidinol dehydrogena 32.6 81 0.0018 28.6 4.6 68 15-82 180-262 (359)
19 PF11460 DUF3007: Protein of u 32.6 51 0.0011 25.4 2.9 19 125-143 85-103 (104)
20 PRK00708 sec-independent trans 31.6 68 0.0015 27.9 3.9 10 43-52 15-24 (209)
21 PRK13729 conjugal transfer pil 31.2 5.2E+02 0.011 25.4 10.5 8 68-75 53-60 (475)
22 COG0139 HisI Phosphoribosyl-AM 30.6 20 0.00044 27.9 0.5 37 17-53 50-95 (111)
23 PF15372 DUF4600: Domain of un 29.5 2E+02 0.0044 23.0 6.0 24 127-150 48-71 (129)
24 PF01502 PRA-CH: Phosphoribosy 29.3 17 0.00037 26.4 -0.1 37 17-53 18-63 (75)
25 PRK04654 sec-independent trans 29.1 1.1E+02 0.0025 26.5 4.8 9 43-51 15-23 (214)
26 PF11944 DUF3461: Protein of u 29.0 83 0.0018 25.0 3.6 24 133-156 102-125 (125)
27 COG4575 ElaB Uncharacterized c 28.5 2.8E+02 0.006 21.4 8.5 43 128-170 32-74 (104)
28 PF14723 SSFA2_C: Sperm-specif 28.4 2.1E+02 0.0045 24.2 6.1 18 134-151 160-177 (179)
29 PF09726 Macoilin: Transmembra 27.8 3.7E+02 0.008 27.7 9.0 20 97-116 543-562 (697)
30 KOG3048 Molecular chaperone Pr 27.7 1.3E+02 0.0029 24.6 4.7 34 124-157 7-40 (153)
31 PF09158 MotCF: Bacteriophage 27.4 23 0.00049 27.3 0.2 25 5-29 19-44 (103)
32 PRK10265 chaperone-modulator p 26.8 1.2E+02 0.0026 22.9 4.2 46 32-82 10-62 (101)
33 PRK01770 sec-independent trans 26.4 1.2E+02 0.0026 25.6 4.4 9 43-51 15-23 (171)
34 COG1671 Uncharacterized protei 25.8 3.6E+02 0.0078 22.2 6.9 26 125-150 122-147 (150)
35 PF06008 Laminin_I: Laminin Do 24.4 3.4E+02 0.0073 23.9 7.3 31 122-152 112-142 (264)
36 PF03938 OmpH: Outer membrane 23.7 3.7E+02 0.0081 21.3 9.0 30 127-156 70-99 (158)
37 TIGR01478 STEVOR variant surfa 22.9 1.6E+02 0.0035 26.8 4.8 45 7-78 25-69 (295)
38 PF03233 Cauli_AT: Aphid trans 22.9 4.5E+02 0.0098 21.9 7.3 25 132-156 137-161 (163)
39 PRK00124 hypothetical protein; 22.6 4.4E+02 0.0095 21.7 7.2 25 126-150 124-148 (151)
40 PF14357 DUF4404: Domain of un 22.2 1.3E+02 0.0029 22.0 3.6 39 104-148 2-40 (85)
41 PF02887 PK_C: Pyruvate kinase 21.1 77 0.0017 24.2 2.2 35 32-82 8-42 (117)
42 PF07106 TBPIP: Tat binding pr 20.9 3.5E+02 0.0075 22.1 6.2 84 97-181 77-160 (169)
43 PF02639 DUF188: Uncharacteriz 20.4 4.4E+02 0.0096 20.9 6.8 22 126-147 108-129 (130)
44 PLN03230 acetyl-coenzyme A car 20.2 5.6E+02 0.012 24.8 8.0 77 57-151 41-123 (431)
45 KOG0995 Centromere-associated 20.1 5.8E+02 0.013 25.7 8.3 57 97-156 299-358 (581)
46 PF11629 Mst1_SARAH: C termina 20.1 1.7E+02 0.0037 19.4 3.2 28 126-153 4-35 (49)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=5.5e-35 Score=249.43 Aligned_cols=154 Identities=20% Similarity=0.334 Sum_probs=111.1
Q ss_pred CCccccceeeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCCCCCcccccCCchHHHHHHHHhhhc
Q 024884 1 MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKKKI 80 (261)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e~~P~~wp~~~~sv~~vleRY~~~~ 80 (261)
|||+||+|++|+|+++|||||+|||+||||||+||||||||+||||||||+|++|+ +||.++ +|..|++||....
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~----~~~~~~-~~~~v~~~~~~~~ 75 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYE----FGSSDE-SVDAVVDRFLNLT 75 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccc----cCCcch-hHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999987 777544 3999999999876
Q ss_pred ccccccchhhhhHHHHHH-----HHHHH----------hHHHHHHHHHhhhcc------cccccCCCCCCCCH-HHHHHH
Q 024884 81 SAVDHGQQRTLSLAKFDE-----SKTRQ----------VDDAATMARKKICVG------DFTTWDQGMDSFSE-DQLKMI 138 (261)
Q Consensus 81 ~~~~~~~~k~~~~q~~l~-----~~~~k----------le~~~~kLrkei~~~------~~~~~GedL~~Ls~-eEL~~L 138 (261)
.. ....+..+...++. ..... .......++...... .....|+++.+++. .+|..+
T Consensus 76 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~ 153 (195)
T KOG0014|consen 76 EP--SRKKKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSL 153 (195)
T ss_pred hh--hhcccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcch
Confidence 65 11111111111111 00000 001111111111110 12467899999999 999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhchh
Q 024884 139 LSTMDDKLKAADRKLNMIKGDQN 161 (261)
Q Consensus 139 e~~Le~~Lk~IR~r~~~l~~~q~ 161 (261)
+.+|+..+..+|........++.
T Consensus 154 ~~~l~~~~~~~~~~~~~~~~~~~ 176 (195)
T KOG0014|consen 154 ESQLESSLHNSRSSKSKPLSDSN 176 (195)
T ss_pred hhHHHHhhcCCCCCCCcCCcchh
Confidence 99999999998877666654443
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.97 E-value=2.1e-31 Score=195.28 Aligned_cols=74 Identities=34% Similarity=0.566 Sum_probs=68.5
Q ss_pred CccccceeeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCCCCCcccccCCchHHHHHHHHhhhcc
Q 024884 2 ACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKKKIS 81 (261)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e~~P~~wp~~~~sv~~vleRY~~~~~ 81 (261)
||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+ |+++++++||+||+..++
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~-------f~s~s~~~vl~ry~~~~~ 73 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYE-------FSSPSMEKIIERYQKTSG 73 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEE-------ecCCCHHHHHHHHHhccc
Confidence 8999999999999999999999999999999999999999999999999999876 223468999999999876
Q ss_pred c
Q 024884 82 A 82 (261)
Q Consensus 82 ~ 82 (261)
.
T Consensus 74 ~ 74 (77)
T cd00265 74 S 74 (77)
T ss_pred c
Confidence 5
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=1.2e-29 Score=188.62 Aligned_cols=75 Identities=33% Similarity=0.606 Sum_probs=69.4
Q ss_pred CccccceeeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCCCCCcccccCCchHHHHHHHHhhhcc
Q 024884 2 ACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKKKIS 81 (261)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e~~P~~wp~~~~sv~~vleRY~~~~~ 81 (261)
||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||+|||||+|+.+ .+||++. +..+|+||...+.
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~----~~~~~~~--~~~~l~~~~~~~~ 74 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLY----VFWPSSE--VEGVISRFEVLSA 74 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcc----eecCcHH--HHHHHHHHhhcCH
Confidence 899999999999999999999999999999999999999999999999999765 4887643 9999999998876
Q ss_pred c
Q 024884 82 A 82 (261)
Q Consensus 82 ~ 82 (261)
.
T Consensus 75 ~ 75 (83)
T cd00266 75 L 75 (83)
T ss_pred h
Confidence 5
No 4
>smart00432 MADS MADS domain.
Probab=99.95 E-value=1.8e-28 Score=170.04 Aligned_cols=55 Identities=36% Similarity=0.627 Sum_probs=53.8
Q ss_pred CccccceeeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCC
Q 024884 2 ACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQS 56 (261)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e 56 (261)
||+||+|++|+|+..|++||+|||.||||||+||||||||+||+|||||+|++|.
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~ 55 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYE 55 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeee
Confidence 8999999999999999999999999999999999999999999999999998876
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.94 E-value=5.8e-28 Score=167.65 Aligned_cols=55 Identities=36% Similarity=0.641 Sum_probs=53.5
Q ss_pred CccccceeeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCC
Q 024884 2 ACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQS 56 (261)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e 56 (261)
||+||+|++|+|+..|++||+|||.||||||+||||||||+||+|||||+|+++.
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~ 55 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYE 55 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCccc
Confidence 7999999999999999999999999999999999999999999999999998765
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.90 E-value=6.4e-26 Score=152.45 Aligned_cols=48 Identities=42% Similarity=0.681 Sum_probs=43.6
Q ss_pred eeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCC
Q 024884 9 EPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQS 56 (261)
Q Consensus 9 k~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e 56 (261)
|+|+|++.|++||+|||.||||||+|||+||||+||||||||+|++|.
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~ 48 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYT 48 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEE
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEE
Confidence 689999999999999999999999999999999999999999999875
No 7
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.70 E-value=3.6e-18 Score=150.65 Aligned_cols=81 Identities=23% Similarity=0.347 Sum_probs=69.2
Q ss_pred CccccceeeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCC-CCCcccccCC-chHHHHHHHHhhh
Q 024884 2 ACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQS-LKPEIWTLKE-GQLTSIIRKYKKK 79 (261)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e-~~P~~wp~~~-~sv~~vleRY~~~ 79 (261)
||+||+|++|+|+..|.|||||||.||||||+|||||.|.+|-|+|.|.+|-+|. ..|.+=|--. ..=+++|.-..+.
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~cLn~ 142 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQACLNA 142 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999999999999999998 6665544322 1237788777776
Q ss_pred ccc
Q 024884 80 ISA 82 (261)
Q Consensus 80 ~~~ 82 (261)
+..
T Consensus 143 pd~ 145 (338)
T KOG0015|consen 143 PDT 145 (338)
T ss_pred CCC
Confidence 654
No 8
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.31 E-value=9.2e-13 Score=121.47 Aligned_cols=59 Identities=25% Similarity=0.403 Sum_probs=56.8
Q ss_pred CCccccceeeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCC-CCC
Q 024884 1 MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQS-LKP 59 (261)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e-~~P 59 (261)
|||+||.|..|+|+.+|.|||+||+.||+|||+||+||.+.+|.++|.|.+|++|. +.|
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp 140 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP 140 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCC
Confidence 78999999999999999999999999999999999999999999999999999988 555
No 9
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.22 E-value=7.8e-11 Score=90.49 Aligned_cols=97 Identities=14% Similarity=0.185 Sum_probs=73.0
Q ss_pred HhhhcccccccchhhhhHHHHHHHHHHHhHHHHHHHHHhhhcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 024884 76 YKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATMARKKICVGDFTTWDQGMDSFSEDQLKMILSTMDDKLKAADRKLNM 155 (261)
Q Consensus 76 Y~~~~~~~~~~~~k~~~~q~~l~~~~~kle~~~~kLrkei~~~~~~~~GedL~~Ls~eEL~~Le~~Le~~Lk~IR~r~~~ 155 (261)
|++.++. ..|......+...+..+ ..++..|+...+ ++.|++|++|+++||.+||.+|+.+|..||.|+..
T Consensus 1 Y~~~~~~-~~~~~~~e~~~~e~~~L----~~~~~~L~~~~R----~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~ 71 (100)
T PF01486_consen 1 YQKQSGT-DLWDSQHEELQQEIAKL----RKENESLQKELR----HLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQ 71 (100)
T ss_pred CCcccCC-CCCHHHHHHHHHHHHHH----HHHHHHHHHHHh----ccccccccccchHHHHHHHHhhhhhHHHHHHHHHH
Confidence 4444443 33444444444444444 444555554444 38899999999999999999999999999999999
Q ss_pred hhhchhhHHHHHHhhhhhhhhhhhhh
Q 024884 156 IKGDQNLKNKAASRKLDHDHSNDAKS 181 (261)
Q Consensus 156 l~~~q~~~~k~~~~~l~e~~~~~~~~ 181 (261)
++.++....+.+++.+.+.|..|...
T Consensus 72 ~l~~~i~~l~~ke~~l~~en~~L~~~ 97 (100)
T PF01486_consen 72 LLMEQIEELKKKERELEEENNQLRQK 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988776554
No 10
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=89.39 E-value=0.89 Score=31.45 Aligned_cols=33 Identities=6% Similarity=0.229 Sum_probs=28.9
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 024884 122 TWDQGMDSFSEDQLKMILSTMDDKLKAADRKLN 154 (261)
Q Consensus 122 ~~GedL~~Ls~eEL~~Le~~Le~~Lk~IR~r~~ 154 (261)
..|+||+.||++||..-...|+.-+.+++..+.
T Consensus 13 ~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 13 EIGEDLSLLSVEELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred ccCCCchhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 569999999999999999999999988875443
No 11
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=76.14 E-value=0.43 Score=26.66 Aligned_cols=13 Identities=15% Similarity=0.225 Sum_probs=10.6
Q ss_pred eEEEecCCCCCCC
Q 024884 44 CIIIYGPGVKGQS 56 (261)
Q Consensus 44 alIvfS~~gKl~e 56 (261)
.+.+|||+|++|.
T Consensus 4 ~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 4 SITTFSPDGRLFQ 16 (23)
T ss_dssp STTSBBTTSSBHH
T ss_pred CceeECCCCeEEe
Confidence 4578999999874
No 12
>PRK04098 sec-independent translocase; Provisional
Probab=56.64 E-value=15 Score=30.54 Aligned_cols=31 Identities=32% Similarity=0.503 Sum_probs=18.8
Q ss_pred ceeEEEecCCCCCCCCCCcccccCCchHHHHHHHHhhhcc
Q 024884 42 EVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKKKIS 81 (261)
Q Consensus 42 eValIvfS~~gKl~e~~P~~wp~~~~sv~~vleRY~~~~~ 81 (261)
=||||||+|. || |. .-.++-..|..|++...
T Consensus 14 vVaLlvfGP~-KL----P~----~~r~lGk~ir~~K~~~~ 44 (158)
T PRK04098 14 VVAIIFLGPD-KL----PQ----AMVDIAKFFKAVKKTIN 44 (158)
T ss_pred HHHHhhcCch-HH----HH----HHHHHHHHHHHHHHHHH
Confidence 3789999996 43 21 12246666666666544
No 13
>PRK01919 tatB sec-independent translocase; Provisional
Probab=53.06 E-value=18 Score=30.30 Aligned_cols=23 Identities=9% Similarity=0.341 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024884 133 DQLKMILSTMDDKLKAADRKLNM 155 (261)
Q Consensus 133 eEL~~Le~~Le~~Lk~IR~r~~~ 155 (261)
+||+.+...+++....+...+..
T Consensus 57 dElrk~~~~~e~~~~~v~~si~~ 79 (169)
T PRK01919 57 DELRKMKTDFESAARDVENTIHD 79 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666655555
No 14
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=34.95 E-value=34 Score=29.37 Aligned_cols=31 Identities=6% Similarity=0.215 Sum_probs=23.6
Q ss_pred ccccceeEEEecCCCCCCCCCCcccccCCchHHHHHHHHhhhcc
Q 024884 38 LCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKKKIS 81 (261)
Q Consensus 38 LCdaeValIvfS~~gKl~e~~P~~wp~~~~sv~~vleRY~~~~~ 81 (261)
--||++||+|||.+.. -+.+.+++=|.+...
T Consensus 90 yrgaqa~vLVFSTTDr-------------~SFea~~~w~~kv~~ 120 (246)
T KOG4252|consen 90 YRGAQASVLVFSTTDR-------------YSFEATLEWYNKVQK 120 (246)
T ss_pred hccccceEEEEecccH-------------HHHHHHHHHHHHHHH
Confidence 3589999999999874 157788888877544
No 15
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=34.77 E-value=63 Score=28.03 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=38.5
Q ss_pred hhhhhhh----hhhhcccccceeEEEecCCCCCCCCCCcccccCCchHHHHHHHHhhhc
Q 024884 26 NSLLKKA----YEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKKKI 80 (261)
Q Consensus 26 ~GL~KKA----~ELsvLCdaeValIvfS~~gKl~e~~P~~wp~~~~sv~~vleRY~~~~ 80 (261)
+-|+-|. .|++|-||-++.|+|.+|+. ..|.+=-|+....+.||..|+...
T Consensus 35 ~rllrkl~~~~de~~trvGqqavvl~~~p~k----p~~~f~vfGa~pL~~vv~~~~~~I 89 (214)
T PF10491_consen 35 TRLLRKLRQTIDEYTTRVGQQAVVLCCTPSK----PNPVFKVFGAAPLENVVRNLKPVI 89 (214)
T ss_pred HHHHHHHHHHHHHHHHhhhceeEEEEecCCC----CCCceeeecchhHHHHHHHHHHHH
Confidence 3455554 79999999999999999963 345555566667899999987753
No 16
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.17 E-value=40 Score=35.20 Aligned_cols=34 Identities=12% Similarity=0.277 Sum_probs=28.1
Q ss_pred eEEEec-CCCCCCCCCCcccccCCchHHHHHHHHhhhccc
Q 024884 44 CIIIYG-PGVKGQSLKPEIWTLKEGQLTSIIRKYKKKISA 82 (261)
Q Consensus 44 alIvfS-~~gKl~e~~P~~wp~~~~sv~~vleRY~~~~~~ 82 (261)
++.+|- |+|.||-||+..| ++-+|+.||+++.+-
T Consensus 38 vl~mfPYpSG~LHvGH~r~Y-----ti~Dv~aRykRm~Gy 72 (814)
T COG0495 38 VLVMFPYPSGALHVGHVRNY-----TIGDVIARYKRMQGY 72 (814)
T ss_pred EEeCCCCCCCCcccCccccc-----cHHHHHHHHHHhcCC
Confidence 567787 8999988999654 589999999998764
No 17
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=33.13 E-value=31 Score=32.58 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=31.8
Q ss_pred hhhhcccccce--eEEEecCCCCCCCCCCcccccCCchHHHHHHHHhhhccc
Q 024884 33 YEFATLCDVEV--CIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKKKISA 82 (261)
Q Consensus 33 ~ELsvLCdaeV--alIvfS~~gKl~e~~P~~wp~~~~sv~~vleRY~~~~~~ 82 (261)
+-|||+||-+| |||--..+|=.| .+|-.+ .+++++++.-|+..+-.
T Consensus 367 yalSV~~~~~V~HClIy~tatG~GF-a~pyn~---y~tlk~lV~hY~h~SLe 414 (464)
T KOG4637|consen 367 YALSVVHDGEVKHCLIYQTATGFGF-AEPYNL---YSTLKELVLHYQHTSLE 414 (464)
T ss_pred eEEEEEECCceeeeEEeeccccccc-cchhHH---HHHHHHHHHHHhhhhHH
Confidence 56899997666 666666666443 566332 24799999999887654
No 18
>KOG4311 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=32.61 E-value=81 Score=28.62 Aligned_cols=68 Identities=16% Similarity=0.206 Sum_probs=43.6
Q ss_pred Ccccccccccch---------hhhhhhhhhhcccccceeEEEecCCCCCCC-CC--CcccccCCc--hHHHHH-HHHhhh
Q 024884 15 KARLATFKKRKN---------SLLKKAYEFATLCDVEVCIIIYGPGVKGQS-LK--PEIWTLKEG--QLTSII-RKYKKK 79 (261)
Q Consensus 15 ~~RqvTFsKRr~---------GL~KKA~ELsvLCdaeValIvfS~~gKl~e-~~--P~~wp~~~~--sv~~vl-eRY~~~ 79 (261)
+.|.|-||+-|+ |=|-+.-.++|-||-+.-+.+.-++|+.|- .. ..++.+..+ +..++| +|-+..
T Consensus 180 ~g~gvy~SRsR~~lW~KGetSgn~q~ll~i~vDCD~D~l~f~v~q~g~gfCHl~t~~Cfg~~~~gL~~LEs~l~~Rk~~a 259 (359)
T KOG4311|consen 180 SGKGVYFSRSRSTLWTKGETSGNFQNLLDIYVDCDRDSLIFLVTQDGPGFCHLGTETCFGTSVFGLYSLESILSKRKETA 259 (359)
T ss_pred cCcceEEecccceeeeccccCcCceeeEEEeeccCccceEEEEecCCCcccccCcceeeeeechhhhhHHHHHHHhhhcC
Confidence 456777888887 445566789999999998888889998653 11 222222211 456666 555555
Q ss_pred ccc
Q 024884 80 ISA 82 (261)
Q Consensus 80 ~~~ 82 (261)
|+.
T Consensus 260 Pee 262 (359)
T KOG4311|consen 260 PEE 262 (359)
T ss_pred Cch
Confidence 544
No 19
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=32.57 E-value=51 Score=25.41 Aligned_cols=19 Identities=11% Similarity=0.461 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q 024884 125 QGMDSFSEDQLKMILSTMD 143 (261)
Q Consensus 125 edL~~Ls~eEL~~Le~~Le 143 (261)
..++.|+.+|+..|...+|
T Consensus 85 kRle~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 85 KRLEELSPEELEALQAEIE 103 (104)
T ss_pred HHHHhCCHHHHHHHHHHhc
Confidence 3478999999999998876
No 20
>PRK00708 sec-independent translocase; Provisional
Probab=31.64 E-value=68 Score=27.87 Aligned_cols=10 Identities=40% Similarity=0.707 Sum_probs=8.1
Q ss_pred eeEEEecCCC
Q 024884 43 VCIIIYGPGV 52 (261)
Q Consensus 43 ValIvfS~~g 52 (261)
|+||||+|..
T Consensus 15 VaLvV~GPkr 24 (209)
T PRK00708 15 VLIVVVGPKD 24 (209)
T ss_pred HHHhhcCchH
Confidence 6789999963
No 21
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=31.18 E-value=5.2e+02 Score=25.40 Aligned_cols=8 Identities=13% Similarity=0.526 Sum_probs=4.2
Q ss_pred hHHHHHHH
Q 024884 68 QLTSIIRK 75 (261)
Q Consensus 68 sv~~vleR 75 (261)
+|..|++.
T Consensus 53 ~~~~vV~~ 60 (475)
T PRK13729 53 DMTGVVDT 60 (475)
T ss_pred Cccceecc
Confidence 45555554
No 22
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=30.62 E-value=20 Score=27.88 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=28.1
Q ss_pred ccccccccch---------hhhhhhhhhhcccccceeEEEecCCCC
Q 024884 17 RLATFKKRKN---------SLLKKAYEFATLCDVEVCIIIYGPGVK 53 (261)
Q Consensus 17 RqvTFsKRr~---------GL~KKA~ELsvLCdaeValIvfS~~gK 53 (261)
+..-||+-|+ |=+-|+.|+.+-||.|+-+|+..+.|.
T Consensus 50 ~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~gg 95 (111)
T COG0139 50 EAHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIGG 95 (111)
T ss_pred eEEEEEcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 3344666666 445567899999999999999999653
No 23
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=29.49 E-value=2e+02 Score=23.02 Aligned_cols=24 Identities=13% Similarity=0.398 Sum_probs=19.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q 024884 127 MDSFSEDQLKMILSTMDDKLKAAD 150 (261)
Q Consensus 127 L~~Ls~eEL~~Le~~Le~~Lk~IR 150 (261)
++.|+++.|..|..+||.-...+-
T Consensus 48 ye~Ms~~~l~~llkqLEkeK~~Le 71 (129)
T PF15372_consen 48 YEQMSVESLNQLLKQLEKEKRSLE 71 (129)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999998766654
No 24
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=29.32 E-value=17 Score=26.37 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=27.4
Q ss_pred ccccccccchhhhh---------hhhhhhcccccceeEEEecCCCC
Q 024884 17 RLATFKKRKNSLLK---------KAYEFATLCDVEVCIIIYGPGVK 53 (261)
Q Consensus 17 RqvTFsKRr~GL~K---------KA~ELsvLCdaeValIvfS~~gK 53 (261)
+.+-||+-|++|-. ++.|+.+-||.|+-++..-|.|.
T Consensus 18 ~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~ 63 (75)
T PF01502_consen 18 RATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGP 63 (75)
T ss_dssp B-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-
T ss_pred cEEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCC
Confidence 33447888877744 56799999999999999999875
No 25
>PRK04654 sec-independent translocase; Provisional
Probab=29.10 E-value=1.1e+02 Score=26.55 Aligned_cols=9 Identities=33% Similarity=0.973 Sum_probs=7.7
Q ss_pred eeEEEecCC
Q 024884 43 VCIIIYGPG 51 (261)
Q Consensus 43 ValIvfS~~ 51 (261)
|+||||+|.
T Consensus 15 VALlV~GPe 23 (214)
T PRK04654 15 VALVVLGPE 23 (214)
T ss_pred HHHHhcCch
Confidence 688999996
No 26
>PF11944 DUF3461: Protein of unknown function (DUF3461); InterPro: IPR020911 This entry describes proteins of unknown function.
Probab=28.96 E-value=83 Score=24.99 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 024884 133 DQLKMILSTMDDKLKAADRKLNMI 156 (261)
Q Consensus 133 eEL~~Le~~Le~~Lk~IR~r~~~l 156 (261)
+||+.||..+.+++..|++.++.|
T Consensus 102 ~dL~HLE~Vv~~KIaEIe~dlekL 125 (125)
T PF11944_consen 102 DDLRHLEKVVNSKIAEIERDLEKL 125 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 699999999999999999887653
No 27
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=28.52 E-value=2.8e+02 Score=21.42 Aligned_cols=43 Identities=23% Similarity=0.249 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHhh
Q 024884 128 DSFSEDQLKMILSTMDDKLKAADRKLNMIKGDQNLKNKAASRK 170 (261)
Q Consensus 128 ~~Ls~eEL~~Le~~Le~~Lk~IR~r~~~l~~~q~~~~k~~~~~ 170 (261)
.+++-+|+..|...++..|+.+|.|+.........+.|.....
T Consensus 32 g~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~ 74 (104)
T COG4575 32 GSLAGDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADA 74 (104)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5678899999999999999999999988876666666655433
No 28
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=28.40 E-value=2.1e+02 Score=24.19 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024884 134 QLKMILSTMDDKLKAADR 151 (261)
Q Consensus 134 EL~~Le~~Le~~Lk~IR~ 151 (261)
||.+||.+|++.+..||+
T Consensus 160 ElqELE~QL~DRl~~l~e 177 (179)
T PF14723_consen 160 ELQELEFQLEDRLLQLRE 177 (179)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 788888888888777764
No 29
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=27.79 E-value=3.7e+02 Score=27.72 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=11.4
Q ss_pred HHHHHHHhHHHHHHHHHhhh
Q 024884 97 DESKTRQVDDAATMARKKIC 116 (261)
Q Consensus 97 l~~~~~kle~~~~kLrkei~ 116 (261)
++.+.+.+|.++++||.+..
T Consensus 543 ~r~r~~~lE~E~~~lr~elk 562 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELK 562 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666665544
No 30
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=27.72 E-value=1.3e+02 Score=24.58 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=29.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024884 124 DQGMDSFSEDQLKMILSTMDDKLKAADRKLNMIK 157 (261)
Q Consensus 124 GedL~~Ls~eEL~~Le~~Le~~Lk~IR~r~~~l~ 157 (261)
+-+|..||+++|..|.+++|..|..+-.-...|.
T Consensus 7 ~idltkLsleQL~~lk~q~dqEl~~lq~Sl~~L~ 40 (153)
T KOG3048|consen 7 GIDLTKLSLEQLGALKKQFDQELNFLQDSLNALK 40 (153)
T ss_pred CCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999888876666665
No 31
>PF09158 MotCF: Bacteriophage T4 MotA, C-terminal; InterPro: IPR015241 Transcription factor MotA is required for the activation of middle promoters in Bacteriophage T4, in addition to phage T4 co-activator AsiA, and sigma-70-containing Escherichia coli RNA polymerase. Phage T4 middle promoters have the sigma70 -10 DNA element, but not the -35 element; instead, they have a MotA box at -30 to which the transcription factor MotA binds []. MotA and AsiA interact with the C-terminal of sigma70 (region 4), which normally binds the -35 element and the beta-flap, thereby diverting sigma70 away from host promoters that require -35 element-binding to phage T4 middle promoters. Transcription factor MotA has two domains: an N-terminal domain required for binding to sigma70, and a C-terminal domain required for binding to the -30 MotA box element in the phage T4 middle promoter. This entry represents the C-terminal domain of MotA factors, which adopts a compact alpha/beta structure comprising three alpha-helices and six beta-strands in the order: alpha1-beta1-beta2-beta3-beta4-alpha2-beta5-beta6-alpha3. In this architecture, the domain's hydrophobic core is at the sheet-helix interface, and the second surface of the beta-sheet is completely exposed. It contains a DNA-binding motif, with a consensus sequence containing nine base pairs (5'-TTTGCTTTA-3'), that appears to bind to various mot boxes, allowing access to the minor groove towards the 5'-end of this sequence and the major groove towards the 3'-end [].; PDB: 1KAF_B.
Probab=27.36 E-value=23 Score=27.25 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=19.5
Q ss_pred ccceeee-CCCCcccccccccchhhh
Q 024884 5 ALKLEPI-KHEKARLATFKKRKNSLL 29 (261)
Q Consensus 5 Ki~ik~I-en~~~RqvTFsKRr~GL~ 29 (261)
+|++|.+ +|.+|=.|+|.||-.|+-
T Consensus 19 ~ie~K~~~~~RSN~~i~f~KRt~Gir 44 (103)
T PF09158_consen 19 KIEVKEIVIDRSNYEIRFKKRTKGIR 44 (103)
T ss_dssp T--EEEEEEETTEEEEEEEEEETTEE
T ss_pred ceeeeeeEeeccceEEeeecccCcee
Confidence 5788877 677888899999999975
No 32
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=26.79 E-value=1.2e+02 Score=22.86 Aligned_cols=46 Identities=11% Similarity=0.242 Sum_probs=27.6
Q ss_pred hhhhhcccccceeEE-------EecCCCCCCCCCCcccccCCchHHHHHHHHhhhccc
Q 024884 32 AYEFATLCDVEVCII-------IYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKKKISA 82 (261)
Q Consensus 32 A~ELsvLCdaeValI-------vfS~~gKl~e~~P~~wp~~~~sv~~vleRY~~~~~~ 82 (261)
..|||..|+++..+| ++.|.+ ..|.-|-|... .-.++.+..++..+
T Consensus 10 ~~Elc~~~gi~~~~l~eLve~GlIep~~----~~~~~~~F~~~-~l~r~~~a~rL~~d 62 (101)
T PRK10265 10 ITEFCLHTGVSEEELNEIVGLGVIEPRE----IQETTWVFDDH-AAIVVQRAVRLRHE 62 (101)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCeecCC----CCcccceECHH-HHHHHHHHHHHHHH
Confidence 468999999876654 233433 33455666543 45666666666554
No 33
>PRK01770 sec-independent translocase; Provisional
Probab=26.41 E-value=1.2e+02 Score=25.57 Aligned_cols=9 Identities=22% Similarity=0.863 Sum_probs=7.8
Q ss_pred eeEEEecCC
Q 024884 43 VCIIIYGPG 51 (261)
Q Consensus 43 ValIvfS~~ 51 (261)
|+||||+|.
T Consensus 15 VaLlV~GPe 23 (171)
T PRK01770 15 IGLVVLGPQ 23 (171)
T ss_pred HHHHhcCch
Confidence 688999996
No 34
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.76 E-value=3.6e+02 Score=22.20 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=16.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH
Q 024884 125 QGMDSFSEDQLKMILSTMDDKLKAAD 150 (261)
Q Consensus 125 edL~~Ls~eEL~~Le~~Le~~Lk~IR 150 (261)
..-..++-.+-..+++.|+.-+..+.
T Consensus 122 ~gp~~~~~rDr~~F~~~ldr~~~~~k 147 (150)
T COG1671 122 GGPAAFSSRDRSRFANALDRLLSRLK 147 (150)
T ss_pred CCCCccChHHHHHHHHHHHHHHHHHh
Confidence 33456677777777777777665543
No 35
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=24.41 E-value=3.4e+02 Score=23.94 Aligned_cols=31 Identities=13% Similarity=0.311 Sum_probs=27.2
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024884 122 TWDQGMDSFSEDQLKMILSTMDDKLKAADRK 152 (261)
Q Consensus 122 ~~GedL~~Ls~eEL~~Le~~Le~~Lk~IR~r 152 (261)
.+|....+++..+|.......+.-|..||.|
T Consensus 112 ~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r 142 (264)
T PF06008_consen 112 SLNENGDQLPSEDLQRALAEAQRMLEEMRKR 142 (264)
T ss_pred HhCcccCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 4567788899999999999999999999876
No 36
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=23.73 E-value=3.7e+02 Score=21.30 Aligned_cols=30 Identities=10% Similarity=0.088 Sum_probs=18.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024884 127 MDSFSEDQLKMILSTMDDKLKAADRKLNMI 156 (261)
Q Consensus 127 L~~Ls~eEL~~Le~~Le~~Lk~IR~r~~~l 156 (261)
...||.++...++..+......++.....+
T Consensus 70 ~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~ 99 (158)
T PF03938_consen 70 KATLSEEERQKRQQELQQKEQELQQFQQQA 99 (158)
T ss_dssp ----SSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447888888888888877777766544443
No 37
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=22.90 E-value=1.6e+02 Score=26.85 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=30.8
Q ss_pred ceeeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCCCCCcccccCCchHHHHHHHHhh
Q 024884 7 KLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKK 78 (261)
Q Consensus 7 ~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e~~P~~wp~~~~sv~~vleRY~~ 78 (261)
.+..|.|.+.|..+=+ | .||..|.+ +.|. |. ..+.|++|++.|.+
T Consensus 25 n~~li~n~tqr~t~~s-R------------~L~Ecel~---~~p~---Y~--------nDpEmK~iid~~n~ 69 (295)
T TIGR01478 25 NVSYIQNNTQMTSTKS-R------------LLAEIQRP---KNPH---YH--------NDPELKEIIDKLNE 69 (295)
T ss_pred ceecccCccccccccc-e------------ehhhhccc---cCCC---CC--------CcHHHHHHHHHHhH
Confidence 4667888877766633 2 68988876 6662 22 13479999999876
No 38
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=22.87 E-value=4.5e+02 Score=21.93 Aligned_cols=25 Identities=24% Similarity=0.496 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 024884 132 EDQLKMILSTMDDKLKAADRKLNMI 156 (261)
Q Consensus 132 ~eEL~~Le~~Le~~Lk~IR~r~~~l 156 (261)
..++.++...++..|+.||..+..+
T Consensus 137 ~~~i~e~IKd~de~L~~I~d~iK~I 161 (163)
T PF03233_consen 137 EKLIEELIKDFDERLKEIRDKIKKI 161 (163)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4688899999999999999776544
No 39
>PRK00124 hypothetical protein; Validated
Probab=22.60 E-value=4.4e+02 Score=21.66 Aligned_cols=25 Identities=12% Similarity=0.332 Sum_probs=19.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
Q 024884 126 GMDSFSEDQLKMILSTMDDKLKAAD 150 (261)
Q Consensus 126 dL~~Ls~eEL~~Le~~Le~~Lk~IR 150 (261)
.-..++-+|=..|++.|+..|...+
T Consensus 124 Gp~~~~~~Dr~~F~~~L~~~l~~~~ 148 (151)
T PRK00124 124 GPKPFTQEDRSRFEAELDKLIRRIK 148 (151)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 4567888888888888888887643
No 40
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=22.19 E-value=1.3e+02 Score=22.03 Aligned_cols=39 Identities=8% Similarity=0.185 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhhhcccccccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 024884 104 VDDAATMARKKICVGDFTTWDQGMDSFSEDQLKMILSTMDDKLKA 148 (261)
Q Consensus 104 le~~~~kLrkei~~~~~~~~GedL~~Ls~eEL~~Le~~Le~~Lk~ 148 (261)
+++.+.+|+.+..+ ...+++-.-..|..|...++..|..
T Consensus 2 L~~~L~~L~~eL~~------~~~ld~~~~~~L~~l~~dIe~~L~~ 40 (85)
T PF14357_consen 2 LQELLEKLHQELEQ------NPPLDEETRAELSSLDDDIEAQLAE 40 (85)
T ss_pred HHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 44556666665544 3445555555666666666665554
No 41
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=21.07 E-value=77 Score=24.23 Aligned_cols=35 Identities=23% Similarity=0.427 Sum_probs=23.6
Q ss_pred hhhhhcccccceeEEEecCCCCCCCCCCcccccCCchHHHHHHHHhhhccc
Q 024884 32 AYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKKKISA 82 (261)
Q Consensus 32 A~ELsvLCdaeValIvfS~~gKl~e~~P~~wp~~~~sv~~vleRY~~~~~~ 82 (261)
|.+++.-++|. ++|||+.+| .+-..+.||+-....
T Consensus 8 a~~~A~~~~ak-~Ivv~T~sG---------------~ta~~isk~RP~~pI 42 (117)
T PF02887_consen 8 AVELAEDLNAK-AIVVFTESG---------------RTARLISKYRPKVPI 42 (117)
T ss_dssp HHHHHHHHTES-EEEEE-SSS---------------HHHHHHHHT-TSSEE
T ss_pred HHHHHHhcCCC-EEEEECCCc---------------hHHHHHHhhCCCCeE
Confidence 56677777755 788999988 456788888765443
No 42
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=20.92 E-value=3.5e+02 Score=22.11 Aligned_cols=84 Identities=8% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHhhhcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHhhhhhhhh
Q 024884 97 DESKTRQVDDAATMARKKICVGDFTTWDQGMDSFSEDQLKMILSTMDDKLKAADRKLNMIKGDQNLKNKAASRKLDHDHS 176 (261)
Q Consensus 97 l~~~~~kle~~~~kLrkei~~~~~~~~GedL~~Ls~eEL~~Le~~Le~~Lk~IR~r~~~l~~~q~~~~k~~~~~l~e~~~ 176 (261)
+...+..+++++..++.++......+ ..-...++.+||......|+..+..+..|+..+..+.......-..++...+.
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL-~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~ 155 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAEL-ASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYK 155 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q ss_pred hhhhh
Q 024884 177 NDAKS 181 (261)
Q Consensus 177 ~~~~~ 181 (261)
.+...
T Consensus 156 ~~~k~ 160 (169)
T PF07106_consen 156 KWRKE 160 (169)
T ss_pred HHHHH
No 43
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=20.42 E-value=4.4e+02 Score=20.91 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=16.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q 024884 126 GMDSFSEDQLKMILSTMDDKLK 147 (261)
Q Consensus 126 dL~~Ls~eEL~~Le~~Le~~Lk 147 (261)
.-...+-+|-+.|+..|+.-|.
T Consensus 108 gpk~~~~~d~~~F~~~L~~~l~ 129 (130)
T PF02639_consen 108 GPKKFTKKDRQRFANALDRLLQ 129 (130)
T ss_pred CCCCCCHHHHHHHHHHHHHHHc
Confidence 3467888888888888887664
No 44
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=20.17 E-value=5.6e+02 Score=24.83 Aligned_cols=77 Identities=19% Similarity=0.275 Sum_probs=37.8
Q ss_pred CCCcccccC--CchH----HHHHHHHhhhcccccccchhhhhHHHHHHHHHHHhHHHHHHHHHhhhcccccccCCCCCCC
Q 024884 57 LKPEIWTLK--EGQL----TSIIRKYKKKISAVDHGQQRTLSLAKFDESKTRQVDDAATMARKKICVGDFTTWDQGMDSF 130 (261)
Q Consensus 57 ~~P~~wp~~--~~sv----~~vleRY~~~~~~~~~~~~k~~~~q~~l~~~~~kle~~~~kLrkei~~~~~~~~GedL~~L 130 (261)
-.| ||.. .+.+ -+.|.+|+-+... ....+.+. ++-+.+++..+..|++-.. +.=-++
T Consensus 41 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~f----e~pi~ele~ki~el~~~~~--------~~~~~~ 103 (431)
T PLN03230 41 EYP--WPEKLPQGELTTGALKILNRFKPLKNK---PKPVTLPF----EKPIVDLENRIDEVRELAN--------KTGVDF 103 (431)
T ss_pred CCC--CcccCCCCcccccHHHHHHhcCCCCCC---CCCCccch----hhHHHHHHHHHHHHHhhhh--------cccccH
Confidence 355 8765 1234 4477777665443 12223332 2334455566666652111 110122
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 024884 131 SEDQLKMILSTMDDKLKAADR 151 (261)
Q Consensus 131 s~eEL~~Le~~Le~~Lk~IR~ 151 (261)
+ +|+..|+..++...+.|-.
T Consensus 104 ~-~ei~~l~~~~~~~~~~i~~ 123 (431)
T PLN03230 104 S-AQIAELEERYDQVRRELYS 123 (431)
T ss_pred H-HHHHHHHHHHHHHHHHHHh
Confidence 2 5677777777666665543
No 45
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.10 E-value=5.8e+02 Score=25.66 Aligned_cols=57 Identities=9% Similarity=0.103 Sum_probs=25.1
Q ss_pred HHHHHHHhHHHHHHHHHhhhcccccccCCCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHhh
Q 024884 97 DESKTRQVDDAATMARKKICVGDFTTWDQGMDSFSEDQLK---MILSTMDDKLKAADRKLNMI 156 (261)
Q Consensus 97 l~~~~~kle~~~~kLrkei~~~~~~~~GedL~~Ls~eEL~---~Le~~Le~~Lk~IR~r~~~l 156 (261)
++..+++.++++.++++++..++...- +-++|.+|.+ .=-..|+.-|..|...++.+
T Consensus 299 l~~Eie~kEeE~e~lq~~~d~Lk~~Ie---~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l 358 (581)
T KOG0995|consen 299 LKSEIEEKEEEIEKLQKENDELKKQIE---LQGISGEDVERMNLERNKLKRELNKIQSELDRL 358 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566666655543322111 1244444433 33334555555554444433
No 46
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=20.06 E-value=1.7e+02 Score=19.43 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=17.7
Q ss_pred CCCCCCHHHHHHHHHHHH----HHHHHHHHHH
Q 024884 126 GMDSFSEDQLKMILSTMD----DKLKAADRKL 153 (261)
Q Consensus 126 dL~~Ls~eEL~~Le~~Le----~~Lk~IR~r~ 153 (261)
-|..+|++||++....|+ .-+..+|+|.
T Consensus 4 fLk~ls~~eL~~rl~~LD~~ME~Eieelr~RY 35 (49)
T PF11629_consen 4 FLKFLSYEELQQRLASLDPEMEQEIEELRQRY 35 (49)
T ss_dssp GGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 366789999988776665 4455555543
Done!