Query 024884
Match_columns 261
No_of_seqs 220 out of 1453
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 16:05:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024884.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024884hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p57_A Myocyte-specific enhanc 100.0 7.3E-37 2.5E-41 227.3 2.5 87 2-97 1-87 (90)
2 1egw_A MADS box transcription 100.0 1.2E-36 4.1E-41 220.8 1.4 74 2-82 1-74 (77)
3 1mnm_A Protein (MCM1 transcrip 100.0 1.8E-34 6.3E-39 217.9 0.2 72 1-79 16-87 (100)
4 1hbx_A SRF, serum response fac 100.0 3.6E-34 1.2E-38 213.7 -1.5 71 1-78 10-80 (92)
5 1k6o_B SRF, serum response fac 100.0 1.3E-33 4.4E-38 214.6 -1.1 69 1-76 9-77 (103)
6 2rpa_A Katanin P60 ATPase-cont 58.1 5.6 0.00019 28.0 2.2 36 29-82 16-51 (78)
7 3nrf_A APAG protein; structura 43.6 4.6 0.00016 30.1 -0.1 40 11-55 21-60 (106)
8 1g6u_A Domain swapped dimer; d 36.9 70 0.0024 19.4 4.6 29 128-156 15-46 (48)
9 2l5g_A GPS2 protein, G protein 32.7 44 0.0015 19.9 3.0 28 130-157 8-35 (38)
10 3ghg_A Fibrinogen alpha chain; 32.2 2.3E+02 0.0079 26.8 9.3 10 69-78 51-60 (562)
11 1z56_A Ligase interacting fact 28.9 1.6E+02 0.0054 25.0 6.9 62 9-81 117-178 (246)
12 3ghg_A Fibrinogen alpha chain; 24.4 1.2E+02 0.004 28.9 5.8 8 59-66 30-37 (562)
13 2l5g_B Putative uncharacterize 23.3 1.4E+02 0.0046 18.3 4.2 29 129-157 1-29 (42)
14 3god_A CAS1; crispr, metallonu 23.0 3.6E+02 0.012 23.5 8.7 42 38-79 78-127 (328)
15 1j1d_B Troponin T, TNT; THIN f 22.4 81 0.0028 23.3 3.6 32 126-157 38-69 (106)
16 1ytz_T Troponin T; muscle, THI 21.7 84 0.0029 23.2 3.5 32 126-157 38-69 (107)
17 1kaf_A Transcription regulator 20.2 25 0.00085 26.2 0.3 24 6-29 23-47 (108)
18 2zvv_Y Cyclin-dependent kinase 20.2 23 0.00078 19.1 0.1 12 15-26 15-26 (26)
No 1
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=7.3e-37 Score=227.30 Aligned_cols=87 Identities=28% Similarity=0.487 Sum_probs=74.9
Q ss_pred CccccceeeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCCCCCcccccCCchHHHHHHHHhhhcc
Q 024884 2 ACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKKKIS 81 (261)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e~~P~~wp~~~~sv~~vleRY~~~~~ 81 (261)
||+||+|++|+|+++|||||+|||+||||||+||||||||+||||||||+||+|+ |+ +++|..||+||+++++
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~-----f~--s~~~~~il~rY~~~~~ 73 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQ-----YA--STDMDKVLLKYTEYNE 73 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEE-----EE--SSCHHHHHHHHHHCCS
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEE-----eC--CCCHHHHHHHHHhcCc
Confidence 8999999999999999999999999999999999999999999999999999987 44 3579999999999887
Q ss_pred cccccchhhhhHHHHH
Q 024884 82 AVDHGQQRTLSLAKFD 97 (261)
Q Consensus 82 ~~~~~~~k~~~~q~~l 97 (261)
. +.+....++.+++
T Consensus 74 ~--~~~~~~~d~~e~~ 87 (90)
T 3p57_A 74 P--HESRTNSDIVEAL 87 (90)
T ss_dssp C--CCEECHHHHHHHH
T ss_pred c--cccCChHhHHHHH
Confidence 6 4433333433333
No 2
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=1.2e-36 Score=220.80 Aligned_cols=74 Identities=31% Similarity=0.556 Sum_probs=67.4
Q ss_pred CccccceeeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCCCCCcccccCCchHHHHHHHHhhhcc
Q 024884 2 ACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKKKIS 81 (261)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e~~P~~wp~~~~sv~~vleRY~~~~~ 81 (261)
||+||+|++|+|+++|||||+|||+||||||+||||||||+||||||||+||+|+ |+ +++|+.||+||+..++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~-----~~--s~~~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQ-----YA--STDMDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEE-----EE--SSCHHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEee-----CC--CCCHHHHHHHHHhccC
Confidence 8999999999999999999999999999999999999999999999999999987 43 4579999999999876
Q ss_pred c
Q 024884 82 A 82 (261)
Q Consensus 82 ~ 82 (261)
.
T Consensus 74 ~ 74 (77)
T 1egw_A 74 P 74 (77)
T ss_dssp -
T ss_pred C
Confidence 4
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=99.98 E-value=1.8e-34 Score=217.91 Aligned_cols=72 Identities=19% Similarity=0.360 Sum_probs=66.8
Q ss_pred CCccccceeeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCCCCCcccccCCchHHHHHHHHhhh
Q 024884 1 MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKKK 79 (261)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e~~P~~wp~~~~sv~~vleRY~~~ 79 (261)
|||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+||+|+ |+++++..||+||...
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~-------f~sps~~~il~r~~G~ 87 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYT-------FSTPKFEPIVTQQEGR 87 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEE-------EECTTTTHHHHSHHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcce-------ecCCCHHHHHHHhhCC
Confidence 89999999999999999999999999999999999999999999999999999988 2334788999999764
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=99.97 E-value=3.6e-34 Score=213.66 Aligned_cols=71 Identities=27% Similarity=0.381 Sum_probs=65.4
Q ss_pred CCccccceeeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCCCCCcccccCCchHHHHHHHHhh
Q 024884 1 MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKK 78 (261)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e~~P~~wp~~~~sv~~vleRY~~ 78 (261)
|||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+||+|+ |++++|..||++|..
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~-------f~s~~~~~~i~~~~G 80 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT-------FATRKLQPMITSETG 80 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEE-------EECGGGGGGTSSHHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEE-------ecCCCHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999987 334578899987653
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.97 E-value=1.3e-33 Score=214.63 Aligned_cols=69 Identities=28% Similarity=0.396 Sum_probs=64.3
Q ss_pred CCccccceeeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCCCCCcccccCCchHHHHHHHH
Q 024884 1 MACEALKLEPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKY 76 (261)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e~~P~~wp~~~~sv~~vleRY 76 (261)
|||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+||+|+ |++++|..||+++
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~-------f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT-------FATRKLQPMITSE 77 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEE-------EECGGGGGGTSSH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeee-------ecCccHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999987 3345789999874
No 6
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=58.06 E-value=5.6 Score=28.01 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=30.1
Q ss_pred hhhhhhhhcccccceeEEEecCCCCCCCCCCcccccCCchHHHHHHHHhhhccc
Q 024884 29 LKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKKKISA 82 (261)
Q Consensus 29 ~KKA~ELsvLCdaeValIvfS~~gKl~e~~P~~wp~~~~sv~~vleRY~~~~~~ 82 (261)
.|+|.|.+.+++=+.|++.|.. +..-|+||.....+
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g------------------~~~qI~k~l~~~~d 51 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQG------------------VLDQMNKYLYSVKD 51 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH------------------HHHHHHHHHHTCSC
T ss_pred HHHHHHHHHhcChHHHHHHHHH------------------HHHHHHHHHHhcCC
Confidence 6899999999999999887753 78889999887654
No 7
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=43.58 E-value=4.6 Score=30.08 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=32.2
Q ss_pred eCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCC
Q 024884 11 IKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQ 55 (261)
Q Consensus 11 Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~ 55 (261)
|.++.-...||-=.-..|-+|.-+|+.+| ++.|+|.||=|
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef 60 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSF 60 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEE
Confidence 34555566788888889999999999887 99999999743
No 8
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=36.86 E-value=70 Score=19.36 Aligned_cols=29 Identities=31% Similarity=0.524 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHHHH---HHHHHHHHHHHHhh
Q 024884 128 DSFSEDQLKMILSTM---DDKLKAADRKLNMI 156 (261)
Q Consensus 128 ~~Ls~eEL~~Le~~L---e~~Lk~IR~r~~~l 156 (261)
++.|.+||-.||..| |++|..++++...+
T Consensus 15 egfspeelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888988887664 55555555555443
No 9
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=32.75 E-value=44 Score=19.93 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024884 130 FSEDQLKMILSTMDDKLKAADRKLNMIK 157 (261)
Q Consensus 130 Ls~eEL~~Le~~Le~~Lk~IR~r~~~l~ 157 (261)
++++|.+.=...|+..|...+..+.++.
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777777777777776654
No 10
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=32.18 E-value=2.3e+02 Score=26.84 Aligned_cols=10 Identities=10% Similarity=0.408 Sum_probs=6.0
Q ss_pred HHHHHHHHhh
Q 024884 69 LTSIIRKYKK 78 (261)
Q Consensus 69 v~~vleRY~~ 78 (261)
|+.+|++..+
T Consensus 51 LQglLdkqEr 60 (562)
T 3ghg_A 51 MKGLIDEVNQ 60 (562)
T ss_dssp HHHHHHHHHH
T ss_pred hhhhHHhhcC
Confidence 6666666544
No 11
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=28.88 E-value=1.6e+02 Score=24.96 Aligned_cols=62 Identities=8% Similarity=0.073 Sum_probs=14.3
Q ss_pred eeeCCCCcccccccccchhhhhhhhhhhcccccceeEEEecCCCCCCCCCCcccccCCchHHHHHHHHhhhcc
Q 024884 9 EPIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGPGVKGQSLKPEIWTLKEGQLTSIIRKYKKKIS 81 (261)
Q Consensus 9 k~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCdaeValIvfS~~gKl~e~~P~~wp~~~~sv~~vleRY~~~~~ 81 (261)
-.|++...=++|+.||-.||..|..+|+.--+-+=+|=.|--+.++|. .+-.+-++|.++-.
T Consensus 117 ~~iev~~~~~itmrkri~~Itqrlg~ltL~~~~~~eIdLFewA~~L~q-----------~i~~ln~k~~~~E~ 178 (246)
T 1z56_A 117 CRMQDDEVWKVVMELESSAIIRKIAELTLHPVKKGEIDLFEMADKLYK-----------DICCVNDSYRNIKE 178 (246)
T ss_dssp ------------------------------------------CTTSGG-----------GTTHHHHHHHHTTT
T ss_pred cCceeCCEEEEEEeehhhHHHhhheeEEeecCccchhhHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 345555566899999999999999999766666666778888888765 46677788887644
No 12
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=24.43 E-value=1.2e+02 Score=28.85 Aligned_cols=8 Identities=13% Similarity=0.393 Sum_probs=4.6
Q ss_pred CcccccCC
Q 024884 59 PEIWTLKE 66 (261)
Q Consensus 59 P~~wp~~~ 66 (261)
-.-|||..
T Consensus 30 e~~WPfCa 37 (562)
T 3ghg_A 30 DSDWPFCS 37 (562)
T ss_dssp CCCCCBCC
T ss_pred cCCCCccc
Confidence 34577753
No 13
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.25 E-value=1.4e+02 Score=18.31 Aligned_cols=29 Identities=14% Similarity=0.402 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024884 129 SFSEDQLKMILSTMDDKLKAADRKLNMIK 157 (261)
Q Consensus 129 ~Ls~eEL~~Le~~Le~~Lk~IR~r~~~l~ 157 (261)
+++-+||.+=...++.-+..+++++..+.
T Consensus 1 ~~tk~~l~qkI~kVdrEI~Kte~kI~~lq 29 (42)
T 2l5g_B 1 GLSKEELIQNMDRVDREITMVEQQISKLK 29 (42)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556777777788888888887777765
No 14
>3god_A CAS1; crispr, metallonuclease, DNAse, prokaryotic immune system, immune system; 2.17A {Pseudomonas aeruginosa}
Probab=23.04 E-value=3.6e+02 Score=23.55 Aligned_cols=42 Identities=17% Similarity=-0.048 Sum_probs=24.9
Q ss_pred ccccceeEEEecCCC-CCCC-CCCc-----ccccCCc-hHHHHHHHHhhh
Q 024884 38 LCDVEVCIIIYGPGV-KGQS-LKPE-----IWTLKEG-QLTSIIRKYKKK 79 (261)
Q Consensus 38 LCdaeValIvfS~~g-Kl~e-~~P~-----~wp~~~~-sv~~vleRY~~~ 79 (261)
|.+..|.|+.|+..| ++|. +.|. ++|.+.. +..-++..|+..
T Consensus 78 la~~gI~V~f~~~~G~r~y~~~~~~~~~~~~~p~~~~~s~~~l~~Q~~~~ 127 (328)
T 3god_A 78 LARAGVLVGFCGGGGTPLFSANEVDVEVSWLTPQSEYRPTEYLQRWVGFW 127 (328)
T ss_dssp HHHTTCEEEEECSTTCCSEEETTEEESEEEEEESSSCCCSHHHHHHHHHH
T ss_pred HHHCCCEEEEECCCCCeEeeeccccccccccCCCccCchHHHHHHHHHHc
Confidence 446678899999999 5766 5443 4554422 234444444433
No 15
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=22.45 E-value=81 Score=23.30 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=27.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024884 126 GMDSFSEDQLKMILSTMDDKLKAADRKLNMIK 157 (261)
Q Consensus 126 dL~~Ls~eEL~~Le~~Le~~Lk~IR~r~~~l~ 157 (261)
++++||.++|+++...|-..+..+-..+.-+.
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE 69 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQ 69 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 58999999999999999999988876655554
No 16
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=21.66 E-value=84 Score=23.25 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=27.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024884 126 GMDSFSEDQLKMILSTMDDKLKAADRKLNMIK 157 (261)
Q Consensus 126 dL~~Ls~eEL~~Le~~Le~~Lk~IR~r~~~l~ 157 (261)
++++||.++|+++...|-..+..+-..+.-+.
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE 69 (107)
T 1ytz_T 38 NIDHLNEDKLRDKAKELWDWLYQLQTEKYDFA 69 (107)
T ss_dssp CCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 79999999999999999999988876655554
No 17
>1kaf_A Transcription regulatory protein MOTA; escherichia coli, X-RAY crystallography, protein-DNA interactions, structural genomics; 1.60A {Enterobacteria phage T4} SCOP: d.199.1.1
Probab=20.24 E-value=25 Score=26.17 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.2
Q ss_pred cceeee-CCCCcccccccccchhhh
Q 024884 6 LKLEPI-KHEKARLATFKKRKNSLL 29 (261)
Q Consensus 6 i~ik~I-en~~~RqvTFsKRr~GL~ 29 (261)
|++|.+ ++.+|=.|+|.||-.|+-
T Consensus 23 ie~K~~~~~RSN~~i~f~KRt~GiR 47 (108)
T 1kaf_A 23 FVLKKVEIYRSNYLAILEKRTNGIR 47 (108)
T ss_dssp CCEEEEEEETTEEEEEEEEEETTEE
T ss_pred ceeeeeEeeccceEEeeecccCcee
Confidence 777776 677788899999999975
No 18
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=20.22 E-value=23 Score=19.15 Aligned_cols=12 Identities=17% Similarity=0.155 Sum_probs=8.4
Q ss_pred Ccccccccccch
Q 024884 15 KARLATFKKRKN 26 (261)
Q Consensus 15 ~~RqvTFsKRr~ 26 (261)
+.|.+.|+||+.
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 457778888763
Done!