Query 024885
Match_columns 261
No_of_seqs 116 out of 437
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:10:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024885.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024885hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5040 BMH1 14-3-3 family pro 100.0 2.1E-93 4.6E-98 607.8 15.9 236 5-240 3-238 (268)
2 smart00101 14_3_3 14-3-3 homol 100.0 3.3E-90 7.1E-95 616.5 26.0 237 7-243 1-239 (244)
3 PF00244 14-3-3: 14-3-3 protei 100.0 5.9E-86 1.3E-90 588.3 24.2 235 7-241 1-235 (236)
4 KOG0841 Multifunctional chaper 100.0 5.5E-81 1.2E-85 545.8 20.8 238 6-243 1-239 (247)
5 PF13424 TPR_12: Tetratricopep 96.2 0.01 2.3E-07 42.7 4.9 55 148-204 21-75 (78)
6 KOG1840 Kinesin light chain [C 94.9 4.2 9.2E-05 40.6 19.4 185 9-208 201-400 (508)
7 TIGR00990 3a0801s09 mitochondr 92.4 2.9 6.3E-05 41.9 13.5 53 148-202 483-535 (615)
8 KOG1840 Kinesin light chain [C 92.3 13 0.00029 37.1 19.6 184 9-215 285-490 (508)
9 PF12862 Apc5: Anaphase-promot 89.7 2.1 4.7E-05 32.4 7.5 71 132-208 3-74 (94)
10 PF13414 TPR_11: TPR repeat; P 82.1 6.7 0.00015 26.9 6.2 47 148-203 19-66 (69)
11 PF04781 DUF627: Protein of un 81.0 4.4 9.6E-05 32.4 5.4 59 103-162 15-74 (111)
12 PF07719 TPR_2: Tetratricopept 80.5 4.6 0.0001 23.7 4.3 30 10-39 4-33 (34)
13 PF13174 TPR_6: Tetratricopept 79.3 4.1 8.9E-05 23.7 3.8 31 9-39 2-32 (33)
14 PF13374 TPR_10: Tetratricopep 79.0 2 4.4E-05 26.4 2.4 24 148-171 18-41 (42)
15 PF12569 NARP1: NMDA receptor- 78.6 77 0.0017 31.8 17.1 62 142-204 156-223 (517)
16 PF13181 TPR_8: Tetratricopept 73.7 6.2 0.00014 23.3 3.5 30 9-38 3-32 (34)
17 PF13428 TPR_14: Tetratricopep 72.5 8.1 0.00018 24.7 4.1 30 10-39 4-33 (44)
18 PF00515 TPR_1: Tetratricopept 72.2 9.4 0.0002 22.5 4.1 30 10-39 4-33 (34)
19 TIGR00990 3a0801s09 mitochondr 68.0 1.4E+02 0.003 30.0 17.1 73 149-230 525-597 (615)
20 TIGR02917 PEP_TPR_lipo putativ 67.6 1.4E+02 0.003 29.9 16.7 30 10-39 468-497 (899)
21 TIGR02917 PEP_TPR_lipo putativ 67.4 1.4E+02 0.003 29.8 16.4 61 8-70 23-83 (899)
22 PF13431 TPR_17: Tetratricopep 65.2 8 0.00017 23.7 2.7 34 154-196 1-34 (34)
23 COG0233 Frr Ribosome recycling 64.6 30 0.00065 30.1 7.0 73 38-111 105-177 (187)
24 PF13424 TPR_12: Tetratricopep 63.4 42 0.00091 23.4 6.7 38 170-209 1-38 (78)
25 PF01765 RRF: Ribosome recycli 62.1 36 0.00078 28.6 7.0 73 38-111 85-157 (165)
26 PF13414 TPR_11: TPR repeat; P 60.4 50 0.0011 22.3 7.4 45 9-54 5-49 (69)
27 PF13432 TPR_16: Tetratricopep 59.2 52 0.0011 22.1 6.8 54 12-67 2-55 (65)
28 TIGR02521 type_IV_pilW type IV 58.4 97 0.0021 25.0 16.9 57 9-67 33-89 (234)
29 smart00028 TPR Tetratricopepti 57.1 27 0.00058 18.3 3.9 29 10-38 4-32 (34)
30 TIGR00496 frr ribosome recycli 56.6 44 0.00096 28.6 6.7 73 38-111 94-166 (176)
31 CHL00033 ycf3 photosystem I as 55.6 1E+02 0.0022 25.0 8.7 70 148-226 88-163 (168)
32 KOG4759 Ribosome recycling fac 55.5 69 0.0015 29.4 8.0 71 38-111 183-253 (263)
33 cd00520 RRF Ribosome recycling 53.6 45 0.00099 28.5 6.3 73 38-111 99-171 (179)
34 PRK00083 frr ribosome recyclin 53.5 53 0.0011 28.4 6.7 73 38-111 103-175 (185)
35 PF14559 TPR_19: Tetratricopep 53.4 39 0.00085 22.8 5.0 44 149-201 8-51 (68)
36 PF13371 TPR_9: Tetratricopept 53.4 57 0.0012 22.3 5.9 45 149-202 12-56 (73)
37 PRK15363 pathogenicity island 52.4 50 0.0011 27.9 6.2 72 145-229 82-155 (157)
38 PF13432 TPR_16: Tetratricopep 52.3 29 0.00063 23.4 4.1 33 7-39 31-63 (65)
39 PRK10049 pgaA outer membrane p 50.9 3.1E+02 0.0067 28.5 14.9 56 10-68 86-141 (765)
40 PF13176 TPR_7: Tetratricopept 50.1 33 0.00071 20.9 3.7 25 10-34 2-26 (36)
41 KOG4162 Predicted calmodulin-b 49.8 1.1E+02 0.0024 32.2 9.2 129 94-237 411-580 (799)
42 PRK12794 flaF flagellar biosyn 45.6 29 0.00063 28.1 3.6 57 180-236 3-60 (122)
43 CHL00033 ycf3 photosystem I as 45.6 79 0.0017 25.8 6.4 69 119-203 32-100 (168)
44 PF13429 TPR_15: Tetratricopep 44.5 65 0.0014 28.5 6.2 162 12-205 49-210 (280)
45 COG3947 Response regulator con 44.1 38 0.00082 31.9 4.5 45 187-236 291-335 (361)
46 PRK15179 Vi polysaccharide bio 41.6 4.3E+02 0.0094 27.6 14.3 33 8-40 87-119 (694)
47 PF10083 DUF2321: Uncharacteri 41.4 1.8E+02 0.004 24.6 7.8 34 25-58 83-116 (158)
48 PRK14720 transcript cleavage f 40.1 62 0.0013 34.8 6.0 76 118-206 99-180 (906)
49 PRK02603 photosystem I assembl 38.1 1.3E+02 0.0028 24.7 6.6 50 149-204 52-101 (172)
50 PF05010 TACC: Transforming ac 38.1 1.9E+02 0.0042 25.5 7.9 84 12-108 123-206 (207)
51 PRK12793 flaF flagellar biosyn 37.9 39 0.00085 27.1 3.2 52 184-236 6-58 (115)
52 PF12895 Apc3: Anaphase-promot 37.8 52 0.0011 23.5 3.7 43 155-200 41-83 (84)
53 PF14559 TPR_19: Tetratricopep 37.4 42 0.00091 22.6 3.0 53 19-73 3-55 (68)
54 PF06552 TOM20_plant: Plant sp 37.3 1.2E+02 0.0025 26.5 6.2 85 129-223 32-122 (186)
55 PRK11447 cellulose synthase su 36.4 6.1E+02 0.013 27.8 16.8 63 9-72 114-176 (1157)
56 COG4499 Predicted membrane pro 36.2 72 0.0016 31.0 5.2 47 174-220 231-282 (434)
57 PRK11788 tetratricopeptide rep 35.9 3.4E+02 0.0074 24.7 16.7 23 13-35 113-135 (389)
58 PRK10049 pgaA outer membrane p 35.1 5.4E+02 0.012 26.8 17.4 31 10-40 52-82 (765)
59 PF13371 TPR_9: Tetratricopept 34.0 75 0.0016 21.7 3.9 29 10-38 32-60 (73)
60 PF12688 TPR_5: Tetratrico pep 33.7 2E+02 0.0044 22.8 6.8 50 149-204 18-67 (120)
61 PLN03088 SGT1, suppressor of 32.3 4.3E+02 0.0093 24.8 10.6 58 9-68 38-95 (356)
62 cd02656 MIT MIT: domain contai 32.3 1.9E+02 0.004 20.6 6.5 27 9-35 8-34 (75)
63 TIGR02795 tol_pal_ybgF tol-pal 31.9 2E+02 0.0044 20.9 7.6 43 10-52 5-49 (119)
64 PRK09782 bacteriophage N4 rece 30.9 7.3E+02 0.016 27.1 16.1 25 11-35 513-537 (987)
65 PRK11447 cellulose synthase su 30.9 7.5E+02 0.016 27.1 15.8 55 12-68 356-410 (1157)
66 PLN03088 SGT1, suppressor of 30.1 1.5E+02 0.0033 27.8 6.5 45 153-201 50-96 (356)
67 cd05804 StaR_like StaR_like; a 30.1 4.1E+02 0.0088 23.9 12.1 35 5-39 41-75 (355)
68 PF08424 NRDE-2: NRDE-2, neces 30.1 3.2E+02 0.007 25.2 8.5 89 148-243 118-216 (321)
69 KOG1156 N-terminal acetyltrans 29.6 2.9E+02 0.0063 28.7 8.4 164 40-235 3-197 (700)
70 TIGR02795 tol_pal_ybgF tol-pal 28.8 2.1E+02 0.0046 20.7 6.0 30 10-39 42-71 (119)
71 TIGR03302 OM_YfiO outer membra 28.7 3.6E+02 0.0078 22.8 17.1 63 8-71 34-98 (235)
72 KOG2002 TPR-containing nuclear 28.6 3.5E+02 0.0075 29.5 9.1 67 5-71 714-780 (1018)
73 COG2250 Uncharacterized conser 28.1 3.2E+02 0.007 22.0 9.5 103 8-111 14-129 (132)
74 PF10516 SHNi-TPR: SHNi-TPR; 27.4 53 0.0012 21.0 2.0 37 130-169 2-38 (38)
75 PF05008 V-SNARE: Vesicle tran 27.2 2.4E+02 0.0051 20.2 7.1 67 25-92 3-70 (79)
76 PRK15331 chaperone protein Sic 26.9 2.9E+02 0.0063 23.5 6.9 71 147-232 86-156 (165)
77 KOG1107 Membrane coat complex 26.5 1.5E+02 0.0033 30.9 5.9 44 147-190 655-699 (760)
78 PRK10370 formate-dependent nit 26.1 1.6E+02 0.0034 25.2 5.3 59 8-68 108-169 (198)
79 PRK02603 photosystem I assembl 26.1 3.6E+02 0.0078 21.9 8.2 13 149-161 89-101 (172)
80 PF12895 Apc3: Anaphase-promot 25.6 1.3E+02 0.0028 21.4 4.1 18 13-30 31-48 (84)
81 PF08899 DUF1844: Domain of un 24.8 1.4E+02 0.0029 22.2 3.9 29 23-53 40-68 (74)
82 KOG0570 Transcriptional coacti 24.1 4.6E+02 0.0099 23.3 7.6 52 44-110 110-166 (223)
83 COG3629 DnrI DNA-binding trans 24.0 5.8E+02 0.013 23.6 9.4 61 10-70 156-217 (280)
84 PRK11189 lipoprotein NlpI; Pro 23.3 1.8E+02 0.0038 26.4 5.4 32 8-39 237-268 (296)
85 KOG0547 Translocase of outer m 22.9 95 0.0021 31.3 3.6 40 149-203 132-177 (606)
86 PHA01810 hypothetical protein 22.7 2.5E+02 0.0055 21.0 5.0 42 20-62 12-54 (100)
87 TIGR02552 LcrH_SycD type III s 22.1 3.5E+02 0.0077 20.4 9.0 58 8-67 18-75 (135)
88 COG2956 Predicted N-acetylgluc 21.8 1.5E+02 0.0032 28.5 4.5 47 11-57 218-264 (389)
89 PRK15326 type III secretion sy 21.8 1.3E+02 0.0029 22.6 3.5 36 148-185 20-59 (80)
90 PF00901 Orbi_VP5: Orbivirus o 21.8 8.3E+02 0.018 24.6 9.8 191 23-229 121-331 (508)
91 cd05804 StaR_like StaR_like; a 21.5 5.9E+02 0.013 22.8 15.8 60 9-68 8-68 (355)
92 COG3063 PilF Tfp pilus assembl 21.5 1.2E+02 0.0027 27.5 3.8 47 148-203 85-131 (250)
93 PF07309 FlaF: Flagellar prote 21.1 1.1E+02 0.0023 24.3 3.0 48 188-236 10-57 (113)
94 PF08631 SPO22: Meiosis protei 20.9 6.1E+02 0.013 22.7 9.2 89 148-237 9-100 (278)
95 cd05493 Bromo_ALL-1 Bromodomai 20.6 1.3E+02 0.0028 24.8 3.4 39 94-132 75-120 (131)
96 PF03635 Vps35: Vacuolar prote 20.5 8.7E+02 0.019 25.7 10.3 40 148-187 701-741 (762)
97 KOG1126 DNA-binding cell divis 20.5 1.2E+02 0.0025 31.3 3.8 67 127-202 484-550 (638)
98 KOG2002 TPR-containing nuclear 20.3 1.2E+03 0.025 25.7 12.2 51 153-207 250-302 (1018)
99 cd02683 MIT_1 MIT: domain cont 20.1 3E+02 0.0066 20.1 5.1 28 8-35 7-34 (77)
100 TIGR00756 PPR pentatricopeptid 20.1 1.8E+02 0.0038 16.2 4.0 27 13-39 6-32 (35)
101 PF09677 TrbI_Ftype: Type-F co 20.0 1E+02 0.0022 24.4 2.7 45 211-260 53-98 (111)
No 1
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-93 Score=607.81 Aligned_cols=236 Identities=73% Similarity=1.135 Sum_probs=231.7
Q ss_pred hhHHhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhCchHHHHH
Q 024885 5 KERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKR 84 (261)
Q Consensus 5 ~~re~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~~e~k~~~~~~~~~~~~ 84 (261)
+.||+.+|+|+|++||+||++|++-||.++..+.+||.+|||||||||||+|+.||+|||++++++||+++++++.++.+
T Consensus 3 ~~rE~svylAkLaeqAERYe~MvenMk~vas~~~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~~~qv~l 82 (268)
T COG5040 3 TSREDSVYLAKLAEQAERYEEMVENMKLVASSGQELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTHQVEL 82 (268)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCChhHHHH
Confidence 44999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHhhcccccchhhcccchhHHHHHHHHHHHHHHHHHHHhh
Q 024885 85 IKEYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEA 164 (261)
Q Consensus 85 i~~yk~ki~~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~ 164 (261)
|++||++|++||..||++|+.+|+++|||.+++.|++|||+|||||||||+|||..|+.+.++.+.+.++|+.|.++|..
T Consensus 83 I~eyrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyRYlAEf~~G~~~~e~a~~slE~YK~AseiA~t 162 (268)
T COG5040 83 IKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFSVGEAREEAADSSLEAYKAASEIATT 162 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHHHHHHhccchHhHHHHHhHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhccCCCC
Q 024885 165 DLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPE 240 (261)
Q Consensus 165 ~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~~~ds~~IlqLLrdNl~~W~~e~~~ 240 (261)
.||||||||||||||||||||||+|++++||.|||+|||+||++||+|+|++|+|+|+||||||||||+||++.+.
T Consensus 163 eLpPT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaFDeAI~ELDtLSEEsYkDSTLIMQLLRDNLTLWTSd~e~ 238 (268)
T COG5040 163 ELPPTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDAEY 238 (268)
T ss_pred cCCCCCchhhhheecceeeeeecccCcHHHHHHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHHhcceeeeccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997543
No 2
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=3.3e-90 Score=616.48 Aligned_cols=237 Identities=75% Similarity=1.127 Sum_probs=229.3
Q ss_pred HHhHHHHHHHHHHhCCHHHHHHHHHHHHhc-C-CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhCchHHHHH
Q 024885 7 RENFVYVAKLAEQAERYDEMVDAMKNVAKL-D-VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKR 84 (261)
Q Consensus 7 re~l~~~Aklaeq~eRy~Dm~~~mk~~i~~-~-~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~~e~k~~~~~~~~~~~~ 84 (261)
|++++|+|||++|||||+||+.+||++++. + .+||.||||||||||||+|+++|+|||+|+++++++..++++.+++.
T Consensus 1 re~~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~~ 80 (244)
T smart00101 1 REENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVAS 80 (244)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHHH
Confidence 689999999999999999999999999997 5 59999999999999999999999999999999999877788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHhhcccccchhhcccchhHHHHHHHHHHHHHHHHHHHhh
Q 024885 85 IKEYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEA 164 (261)
Q Consensus 85 i~~yk~ki~~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~ 164 (261)
++.||++|++||..+|++||++||++|||.+++++++|||+|||||||||+|||..|+++++++++|+++|++|+++|++
T Consensus 81 ~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~ 160 (244)
T smart00101 81 IKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALA 160 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhccCCCCCCc
Q 024885 165 DLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDGE 243 (261)
Q Consensus 165 ~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~~~ds~~IlqLLrdNl~~W~~e~~~~~~ 243 (261)
+||||||+||||+||||||||||+|++++||+||++|||+|++++|+++|++|+|+|+|||||||||++|+++.+++++
T Consensus 161 ~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~y~dstlImqLLrDNL~lW~~~~~~~~~ 239 (244)
T smart00101 161 ELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDLQDDGA 239 (244)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHHhccCCCCcchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999775554
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=5.9e-86 Score=588.32 Aligned_cols=235 Identities=71% Similarity=1.108 Sum_probs=223.6
Q ss_pred HHhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhCchHHHHHHH
Q 024885 7 RENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIK 86 (261)
Q Consensus 7 re~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~~e~k~~~~~~~~~~~~i~ 86 (261)
|++++|+|||++|||||+||+++||++++.+++||.|||||||+||||+|+++|+|||+|++++++++.+|++.+++.++
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~ 80 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIK 80 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHhhcccccchhhcccchhHHHHHHHHHHHHHHHHHHHhhcC
Q 024885 87 EYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADL 166 (261)
Q Consensus 87 ~yk~ki~~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L 166 (261)
+||++|++||..+|++|+++||++|+|.+++++++|||+|||||||||+|||..++++++++++|.++|++|+++|+++|
T Consensus 81 ~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L 160 (236)
T PF00244_consen 81 DYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKEL 160 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhccCCCCC
Q 024885 167 PPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPED 241 (261)
Q Consensus 167 ~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~~~ds~~IlqLLrdNl~~W~~e~~~~ 241 (261)
|||||+||||+||||||||||+|++++||+||++||++|++++++++|++|+|+++|||||||||++|+++.+++
T Consensus 161 ~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlLrdNl~lW~~e~~~~ 235 (236)
T PF00244_consen 161 PPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLLRDNLTLWTSEEEEE 235 (236)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHHHHHHHHHTTT----
T ss_pred CCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987765
No 4
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-81 Score=545.85 Aligned_cols=238 Identities=79% Similarity=1.169 Sum_probs=232.4
Q ss_pred hHHhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhCchHHHHHH
Q 024885 6 ERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRI 85 (261)
Q Consensus 6 ~re~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~~e~k~~~~~~~~~~~~i 85 (261)
+|++++++|++++|++||+||+.+||.+++.+.+||.+||||||++|||+|+++|++||+|++++|++++++++.++..+
T Consensus 1 ~~~~~v~~akl~eqaery~~m~~~Mk~v~~~~~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v~~i 80 (247)
T KOG0841|consen 1 EREELVYKAKLAEQAERYDEMVEAMKKVAELDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKVKMI 80 (247)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhhcccchhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-ChhHHHHHHhhcccccchhhcccchhHHHHHHHHHHHHHHHHHHHhh
Q 024885 86 KEYRQKVESELSDICNDIMTVIDEHLIPSASA-GESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEA 164 (261)
Q Consensus 86 ~~yk~ki~~EL~~~C~eii~lId~~Lip~~~~-~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~ 164 (261)
..||++|+.||..+|++++.++|.+|+|.++. .|++|||+|||||||||++||..|++|++++++++++|+.|+++++.
T Consensus 81 ~~yr~~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~rylae~~sg~erke~~~~sl~aYk~a~~ia~~ 160 (247)
T KOG0841|consen 81 KEYRQKVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYRYLAEFASGDERKEAADQSLEAYKEASEIAKA 160 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999888 78999999999999999999999999999999999999999999998
Q ss_pred cCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhccCCCCCCc
Q 024885 165 DLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDGE 243 (261)
Q Consensus 165 ~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~~~ds~~IlqLLrdNl~~W~~e~~~~~~ 243 (261)
.|+|||||||||+||||||||||++.|++||.|||+|||+||.++|++++++|+|||+||||||||+|+|+++.+++..
T Consensus 161 ~l~PthPirLgLaLnfSvf~yeilnsPe~ac~lak~a~d~ai~eldtl~e~sykdStlimqllrdnltlWts~~~~~~~ 239 (247)
T KOG0841|consen 161 ELQPTHPIRLGLALNFSVFYYEILNSPERACSLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEK 239 (247)
T ss_pred cCCCCCchHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhccccHHHHhhhHHHHHHHHHhhhhhccCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999777654
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.17 E-value=0.01 Score=42.72 Aligned_cols=55 Identities=25% Similarity=0.332 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q 024885 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (261)
Q Consensus 148 ~~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~ 204 (261)
-++|...|++|+++ ...+++.||...-...|.+..++. +|+.++|++..++|++-
T Consensus 21 ~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 21 YDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 36799999999999 457899888888888888888887 69999999999998764
No 6
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=94.90 E-value=4.2 Score=40.59 Aligned_cols=185 Identities=16% Similarity=0.190 Sum_probs=120.5
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhc----C--CCCC-HHHHHHHHHHHhhhhhhhHHHHHHHHH-HhhhhhhhCc--
Q 024885 9 NFVYVAKLAEQAERYDEMVDAMKNVAKL----D--VELT-VEERNLLSVGYKNVIGARRASWRILSS-IEQKEEAKGN-- 78 (261)
Q Consensus 9 ~l~~~Aklaeq~eRy~Dm~~~mk~~i~~----~--~~Ls-~eERnLls~ayKn~i~~~R~s~R~l~~-~e~k~~~~~~-- 78 (261)
.+.+++.+..+.|+|+.++...++.++. . ..+- ..-.+-|++.|-+ .+..+.|..++.. +...+...|.
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~-~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRS-LGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4556888888899999999999998865 1 1122 2233445655544 3445666666642 3333333333
Q ss_pred hHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHhhcccccchhhcccchhHHHHHHHHHH
Q 024885 79 EVNAKRIKE-----YRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMK 153 (261)
Q Consensus 79 ~~~~~~i~~-----yk~ki~~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~ 153 (261)
+.....+.+ ++.-=-.|-...|+.+++|..+.+ .+..++...-+ .++.--..-..=.+.|..
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~--~~~~~~v~~~l-----------~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL--GASHPEVAAQL-----------SELAAILQSMNEYEEAKK 346 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh--ccChHHHHHHH-----------HHHHHHHHHhcchhHHHH
Confidence 332222222 222333677899999999998843 33333322222 222211111222578899
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q 024885 154 AYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISE 208 (261)
Q Consensus 154 aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ 208 (261)
.|+.|+.+....+.+-||.-=|.--|+++.|+- +|..++|.++.++|+...-+-
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~~~ 400 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILREL 400 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhc
Confidence 999999999888999999999999999999886 799999999999998877543
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=92.41 E-value=2.9 Score=41.94 Aligned_cols=53 Identities=15% Similarity=0.185 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHH
Q 024885 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 202 (261)
Q Consensus 148 ~~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iak~af 202 (261)
.+.|...|++|+.+.. ..++.++..+. .++.+..+|+-.++.++|+.+.++|+
T Consensus 483 ~~~A~~~~~~Al~l~p-~~~~~~~~~~~-l~~~a~~~~~~~~~~~eA~~~~~kAl 535 (615)
T TIGR00990 483 FDEAIEKFDTAIELEK-ETKPMYMNVLP-LINKALALFQWKQDFIEAENLCEKAL 535 (615)
T ss_pred HHHHHHHHHHHHhcCC-ccccccccHHH-HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3567788888876653 23333332222 34555556666677777777766664
No 8
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=92.28 E-value=13 Score=37.10 Aligned_cols=184 Identities=14% Similarity=0.129 Sum_probs=116.2
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhcC----CCCCHHHHHHHHH-H--------HhhhhhhhHHHHHHHHHHhhhhhh
Q 024885 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLD----VELTVEERNLLSV-G--------YKNVIGARRASWRILSSIEQKEEA 75 (261)
Q Consensus 9 ~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~----~~Ls~eERnLls~-a--------yKn~i~~~R~s~R~l~~~e~k~~~ 75 (261)
-+.-+|.+....|+|+++-.+++.+++.- ....++=-..|+. + |...+.-.+.+++++. ...+
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~---~~~g- 360 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL---DAPG- 360 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH---hhcc-
Confidence 35567888888899999999999888542 2233332222222 1 4445555555555553 1111
Q ss_pred hCchHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHhhcccccchhhcccchhHHH
Q 024885 76 KGNEVNAKRIKEYRQKV---------ESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKE 146 (261)
Q Consensus 76 ~~~~~~~~~i~~yk~ki---------~~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~ 146 (261)
..++ .+..++..+ -+|=..+-..+|.+.-...= ..+..--.+++.|-.+|+|-.
T Consensus 361 ~~~~----~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~--~~~~~~~~~l~~la~~~~~~k----------- 423 (508)
T KOG1840|consen 361 EDNV----NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG--KKDYGVGKPLNQLAEAYEELK----------- 423 (508)
T ss_pred ccch----HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc--CcChhhhHHHHHHHHHHHHhc-----------
Confidence 1110 111111111 13445566667766654442 223445677888887775422
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCcc
Q 024885 147 AAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEE 215 (261)
Q Consensus 147 ~~~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee 215 (261)
-...|.+.|..|..+. ....|.||--++..+|.+. .|+-+|+.++|++++..+..-=-..+++.+.+
T Consensus 424 ~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~-~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~ 490 (508)
T KOG1840|consen 424 KYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAA-LYRAQGNYEAAEELEEKVLNAREQRLGTASPT 490 (508)
T ss_pred ccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 1356889999999999 7899999999999999988 56678999999999998876655666655543
No 9
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.72 E-value=2.1 Score=32.35 Aligned_cols=71 Identities=21% Similarity=0.230 Sum_probs=51.2
Q ss_pred ccchhhcccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHh-hhHHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q 024885 132 YRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLA-LNFSVFYYEIMNSPERACHLAKQAFDEAISE 208 (261)
Q Consensus 132 yRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~PirLgLa-LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ 208 (261)
.+|+--+..++ -..|.+...+.++.+.....+.++..+..+ ||.+.+++. +|++++|+...++|++-|-..
T Consensus 3 l~~~~~~~~~d-----y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 3 LRYLNALRSGD-----YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHHHHcCC-----HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHH
Confidence 34544444443 246788888888888777776654555544 788887776 699999999999998888764
No 10
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=82.06 E-value=6.7 Score=26.92 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhC-ChHHHHHHHHHHHH
Q 024885 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMN-SPERACHLAKQAFD 203 (261)
Q Consensus 148 ~~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~-~~~~A~~iak~afd 203 (261)
-+.|...|++|+++ +|-.-.+..|.++-|+. +| ++++|+...++|+.
T Consensus 19 ~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 19 YEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHH
Confidence 35789999999876 34444577888888776 57 79999998888764
No 11
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=81.04 E-value=4.4 Score=32.36 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=40.6
Q ss_pred HHHHHHhhcCCCCCCChhHHHHHHhhcccccchhhcccc-hhHHHHHHHHHHHHHHHHHHH
Q 024885 103 IMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFG-DEKKEAAANSMKAYETATTAA 162 (261)
Q Consensus 103 ii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~-~~~~~~~~~A~~aY~~A~~~a 162 (261)
.++||...+...- +.++-.|-+...|+.|..+|....+ +-+..+.-.|.+||.+|..++
T Consensus 15 AL~iied~i~~h~-~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls 74 (111)
T PF04781_consen 15 ALEIIEDLISRHG-EDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS 74 (111)
T ss_pred HHHHHHHHHHHcc-CCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence 3445544443322 2233347788999999999998654 567778999999999997554
No 12
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.50 E-value=4.6 Score=23.67 Aligned_cols=30 Identities=20% Similarity=0.418 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 024885 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (261)
Q Consensus 10 l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~ 39 (261)
+..++.+..+.|+|+++++++++++..+|+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 467889999999999999999999987663
No 13
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.28 E-value=4.1 Score=23.66 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 024885 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (261)
Q Consensus 9 ~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~ 39 (261)
-+..+|.+..+.|++++++..+++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3567899999999999999999999987664
No 14
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.01 E-value=2 Score=26.35 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCc
Q 024885 148 AANSMKAYETATTAAEADLPPTHP 171 (261)
Q Consensus 148 ~~~A~~aY~~A~~~a~~~L~pt~P 171 (261)
.+.|...|++|+.+.+..++|.||
T Consensus 18 ~~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 18 YEEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHHH---------
T ss_pred cchhhHHHHHHHHHHHHHhccccc
Confidence 357999999999999888899998
No 15
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=78.57 E-value=77 Score=31.81 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCC------CCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q 024885 142 DEKKEAAANSMKAYETATTAAEADLPP------THPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (261)
Q Consensus 142 ~~~~~~~~~A~~aY~~A~~~a~~~L~p------t~PirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~ 204 (261)
..|..+++.-...|...++... .+++ ..|.-+--++.|-.-+|+.+|+.++|++...+|++-
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~-~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNG-SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccC-CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3455666666666666554432 3432 357777778888888999999999999988877553
No 16
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=73.67 E-value=6.2 Score=23.26 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 024885 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDV 38 (261)
Q Consensus 9 ~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~ 38 (261)
-+..++++..+.|+|+.++.++++.++.+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 356789999999999999999999998755
No 17
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=72.48 E-value=8.1 Score=24.71 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 024885 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (261)
Q Consensus 10 l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~ 39 (261)
...+|+...+.|++++++..+++++...|+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 567899999999999999999999988775
No 18
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=72.24 E-value=9.4 Score=22.55 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 024885 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (261)
Q Consensus 10 l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~ 39 (261)
+..++.+..+.++|++++.+.+++++.+|+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 456788889999999999999999988774
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=68.01 E-value=1.4e+02 Score=29.99 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHH
Q 024885 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLR 228 (261)
Q Consensus 149 ~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~~~ds~~IlqLLr 228 (261)
+.|.+.|++|+. +.|.++. ..++.+-.++. .|+.++|+....+|..-+-+.-+-+.--++.+++.+-..++
T Consensus 525 ~eA~~~~~kAl~-----l~p~~~~---a~~~la~~~~~-~g~~~eAi~~~e~A~~l~~~~~e~~~a~~~~~a~~~~~~~~ 595 (615)
T TIGR00990 525 IEAENLCEKALI-----IDPECDI---AVATMAQLLLQ-QGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQVQ 595 (615)
T ss_pred HHHHHHHHHHHh-----cCCCcHH---HHHHHHHHHHH-ccCHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666654 4555553 22334444444 79999999988887766543222222335666666645555
Q ss_pred hh
Q 024885 229 DN 230 (261)
Q Consensus 229 dN 230 (261)
.+
T Consensus 596 ~~ 597 (615)
T TIGR00990 596 ED 597 (615)
T ss_pred HH
Confidence 44
No 20
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=67.57 E-value=1.4e+02 Score=29.87 Aligned_cols=30 Identities=3% Similarity=0.082 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 024885 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (261)
Q Consensus 10 l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~ 39 (261)
...++.+..+.|+|++++.++.++++.+|.
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 497 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIEPD 497 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Confidence 455666777777777777777777665544
No 21
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=67.43 E-value=1.4e+02 Score=29.85 Aligned_cols=61 Identities=26% Similarity=0.270 Sum_probs=48.4
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Q 024885 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIE 70 (261)
Q Consensus 8 e~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~~e 70 (261)
..++..|+...+-|+|++++..+++.+...|+ +.+=+..+..+|-. .+....+...+....
T Consensus 23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~ 83 (899)
T TIGR02917 23 ESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN-DAEARFLLGKIYLA-LGDYAAAEKELRKAL 83 (899)
T ss_pred HHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 34678899999999999999999999987777 66777888887766 477777777776543
No 22
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=65.21 E-value=8 Score=23.72 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHH
Q 024885 154 AYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACH 196 (261)
Q Consensus 154 aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~ 196 (261)
+|++|+++ .|.|| ....|++++|+. .|+.++|++
T Consensus 1 ~y~kAie~-----~P~n~---~a~~nla~~~~~-~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL-----NPNNA---EAYNNLANLYLN-QGDYEEAIA 34 (34)
T ss_pred ChHHHHHH-----CCCCH---HHHHHHHHHHHH-CcCHHhhcC
Confidence 36667643 35555 456788888886 599999863
No 23
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=64.63 E-value=30 Score=30.12 Aligned_cols=73 Identities=22% Similarity=0.220 Sum_probs=49.7
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024885 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (261)
Q Consensus 38 ~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~~e~k~~~~~~~~~~~~i~~yk~ki~~EL~~~C~eii~lId~~L 111 (261)
|+||.|-|.-|..-.|...-..|.++|.+..=- +...+...+-..+-++-.++.++++..+.++.+.-||..+
T Consensus 105 P~lTeErRkelvK~~k~~~EeakvaiRniRrda-~d~iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 105 PPLTEERRKELVKVAKKYAEEAKVAVRNIRRDA-NDKIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999988899998885311 1110101000112355667778888888888888888765
No 24
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=63.44 E-value=42 Score=23.44 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=30.7
Q ss_pred CcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhh
Q 024885 170 HPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISEL 209 (261)
Q Consensus 170 ~PirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~Ai~~l 209 (261)
||.......|.+..|++ +|+.++|+...++|++- ...+
T Consensus 1 H~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~-~~~~ 38 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRE-LGRYDEALDYYEKALDI-EEQL 38 (78)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-HHHT
T ss_pred CHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH-HHHH
Confidence 78888889999999886 79999999999999888 5443
No 25
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=62.13 E-value=36 Score=28.61 Aligned_cols=73 Identities=22% Similarity=0.196 Sum_probs=47.6
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024885 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (261)
Q Consensus 38 ~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~~e~k~~~~~~~~~~~~i~~yk~ki~~EL~~~C~eii~lId~~L 111 (261)
|.+|.|-|.-+....|......|.++|.+..--.+.-.+ .......-.+-..+++++|..+.+..+.-||..+
T Consensus 85 P~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk-~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~ 157 (165)
T PF01765_consen 85 PPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKK-LKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELL 157 (165)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999986522221100 0000002345556677777777777777776544
No 26
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=60.38 E-value=50 Score=22.34 Aligned_cols=45 Identities=18% Similarity=0.298 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 024885 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKN 54 (261)
Q Consensus 9 ~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~Ls~eERnLls~ayKn 54 (261)
.+..++.++.+.|+|++++.++++.++.+|.- ..=..-++.+|..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-~~~~~~~g~~~~~ 49 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN-AEAYYNLGLAYMK 49 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHH
Confidence 45678899999999999999999999987763 3333444444433
No 27
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=59.23 E-value=52 Score=22.10 Aligned_cols=54 Identities=22% Similarity=0.188 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 024885 12 YVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (261)
Q Consensus 12 ~~Aklaeq~eRy~Dm~~~mk~~i~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~ 67 (261)
-+|...-+.|+|++++..+++++..+|. +.+=+..+..++- ..+....|...+.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~-~~g~~~~A~~~~~ 55 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILY-QQGRYDEALAYYE 55 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 4678888999999999999999987755 5555556665554 3344444444443
No 28
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=58.43 E-value=97 Score=25.00 Aligned_cols=57 Identities=11% Similarity=-0.002 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 024885 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (261)
Q Consensus 9 ~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~ 67 (261)
-...++......|+|+.++..+++++...|.- ..-...++..|-.. +....+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~-~~~~~A~~~~~ 89 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDD-YLAYLALALYYQQL-GELEKAEDSFR 89 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 35567788888899999999999998776543 33444455544332 33344444443
No 29
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=57.05 E-value=27 Score=18.33 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 024885 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDV 38 (261)
Q Consensus 10 l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~ 38 (261)
+..++.+..+.++|++++..+.+.+...|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 35677888889999999999998887654
No 30
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=56.56 E-value=44 Score=28.64 Aligned_cols=73 Identities=19% Similarity=0.233 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024885 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (261)
Q Consensus 38 ~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~~e~k~~~~~~~~~~~~i~~yk~ki~~EL~~~C~eii~lId~~L 111 (261)
|+||.|-|.=|....|...-..|.++|-+..--.+.- +........-++-.++++++|..+.++.+.-||..+
T Consensus 94 P~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~i-Kk~~k~~~iseD~~k~~~~~iQkltd~~i~~id~~~ 166 (176)
T TIGR00496 94 PPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDKV-KKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEIL 166 (176)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999988888888888753111110 000000011144555666777777777777666654
No 31
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=55.57 E-value=1e+02 Score=25.04 Aligned_cols=70 Identities=16% Similarity=0.087 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHH------HHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHH
Q 024885 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYY------EIMNSPERACHLAKQAFDEAISELDTLNEESYKDST 221 (261)
Q Consensus 148 ~~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~y------Ei~~~~~~A~~iak~afd~Ai~~ld~l~ee~~~ds~ 221 (261)
.+.|..+|++|+.+ .|.+ .....|.++.++ ..+|+.+.|.....+|+.---..+ .++.+.+.++.
T Consensus 88 ~~eA~~~~~~Al~~-----~~~~---~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~-~~~p~~~~~~~ 158 (168)
T CHL00033 88 HTKALEYYFQALER-----NPFL---PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAI-ALAPGNYIEAQ 158 (168)
T ss_pred HHHHHHHHHHHHHh-----CcCc---HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHH-HhCcccHHHHH
Confidence 35688889888855 3333 233445555554 247888888877776654322222 34555566665
Q ss_pred HHHHH
Q 024885 222 LIMQL 226 (261)
Q Consensus 222 ~IlqL 226 (261)
.-|..
T Consensus 159 ~~~~~ 163 (168)
T CHL00033 159 NWLKI 163 (168)
T ss_pred HHHHH
Confidence 54443
No 32
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=55.54 E-value=69 Score=29.36 Aligned_cols=71 Identities=23% Similarity=0.279 Sum_probs=50.3
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024885 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (261)
Q Consensus 38 ~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~~e~k~~~~~~~~~~~~i~~yk~ki~~EL~~~C~eii~lId~~L 111 (261)
|+.|.|-|.=|+...+.....+|.|+|-+..=--+...+... ..=.+-..+++.||..+.++.++.+|..|
T Consensus 183 P~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~---~~~~D~vkkae~~l~~l~k~~v~~ld~ll 253 (263)
T KOG4759|consen 183 PPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKK---SLSEDEVKKAEAELQKLAKDAVNKLDDLL 253 (263)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 668899999999999999999999999886422222111111 02244556778888888888888887765
No 33
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=53.57 E-value=45 Score=28.54 Aligned_cols=73 Identities=22% Similarity=0.234 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024885 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (261)
Q Consensus 38 ~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~~e~k~~~~~~~~~~~~i~~yk~ki~~EL~~~C~eii~lId~~L 111 (261)
|++|.|-|.=|....|...-..|.++|.+..--.+.- ++.......-++-.++.+++|..+.++.+.-||..+
T Consensus 99 P~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~l-Kk~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~~ 171 (179)
T cd00520 99 PPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKI-KKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELL 171 (179)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999988888888888753111110 000000001234445566667777767666666544
No 34
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=53.49 E-value=53 Score=28.39 Aligned_cols=73 Identities=21% Similarity=0.207 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024885 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (261)
Q Consensus 38 ~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~~e~k~~~~~~~~~~~~i~~yk~ki~~EL~~~C~eii~lId~~L 111 (261)
|+||.|-|.=|....|...-..|.++|.+..--.+.-.+ .......-++-.++.++||..+.+..+.-||..+
T Consensus 103 P~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk-~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~~ 175 (185)
T PRK00083 103 PPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKLKK-LEKDKEISEDELKRAEDEIQKLTDKYIKKIDELL 175 (185)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999998888888888885421111000 0000001144445666677777777776666554
No 35
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=53.42 E-value=39 Score=22.78 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHH
Q 024885 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQA 201 (261)
Q Consensus 149 ~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iak~a 201 (261)
+.|...|++++.. +|-...+.++++..|+. .|+.++|..+..+.
T Consensus 8 ~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 8 DEAIELLEKALQR--------NPDNPEARLLLAQCYLK-QGQYDEAEELLERL 51 (68)
T ss_dssp HHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCC
T ss_pred HHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 4566777776533 44455556667777777 59999988876653
No 36
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=53.38 E-value=57 Score=22.27 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHH
Q 024885 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 202 (261)
Q Consensus 149 ~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iak~af 202 (261)
+.|.++++.++.+ +|-...+-++++.+++. +|+.++|+....+++
T Consensus 12 ~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 12 EEALEVLERALEL--------DPDDPELWLQRARCLFQ-LGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHHHHHHHHh--------CcccchhhHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 3445555554433 55556667778888887 699999988776666
No 37
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=52.37 E-value=50 Score=27.91 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccc--hHhHHH
Q 024885 145 KEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEES--YKDSTL 222 (261)
Q Consensus 145 ~~~~~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~--~~ds~~ 222 (261)
..--+.|..+|..|..+. |.||- ...|.++-+. .+|+.+.|+ ++|+.|+.--...++.. ..-+..
T Consensus 82 ~g~~~~AI~aY~~A~~L~-----~ddp~---~~~~ag~c~L-~lG~~~~A~----~aF~~Ai~~~~~~~~~~~l~~~A~~ 148 (157)
T PRK15363 82 QKHWGEAIYAYGRAAQIK-----IDAPQ---APWAAAECYL-ACDNVCYAI----KALKAVVRICGEVSEHQILRQRAEK 148 (157)
T ss_pred HhhHHHHHHHHHHHHhcC-----CCCch---HHHHHHHHHH-HcCCHHHHH----HHHHHHHHHhccChhHHHHHHHHHH
Confidence 344578888888887554 45553 1445555554 368887765 58888887664443321 222555
Q ss_pred HHHHHHh
Q 024885 223 IMQLLRD 229 (261)
Q Consensus 223 IlqLLrd 229 (261)
.+..|.|
T Consensus 149 ~L~~l~~ 155 (157)
T PRK15363 149 MLQQLSD 155 (157)
T ss_pred HHHHhhc
Confidence 5555554
No 38
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=52.26 E-value=29 Score=23.40 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=27.2
Q ss_pred HHhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 024885 7 RENFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (261)
Q Consensus 7 re~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~ 39 (261)
.+-+..++.+..+.|+|++.+.++++++...|.
T Consensus 31 ~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 31 PEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 455678899999999999999999999877653
No 39
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=50.94 E-value=3.1e+02 Score=28.55 Aligned_cols=56 Identities=18% Similarity=0.126 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 024885 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (261)
Q Consensus 10 l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ 68 (261)
...++.+.-..|++++++..+++++...|+-.. ...+..++.. .+....+...+..
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~--~~~la~~l~~-~g~~~~Al~~l~~ 141 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVSGAPDKAN--LLALAYVYKR-AGRHWDELRAMTQ 141 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHH-CCCHHHHHHHHHH
Confidence 345556666667777777777777666554444 5555555543 2444555555543
No 40
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=50.12 E-value=33 Score=20.90 Aligned_cols=25 Identities=8% Similarity=0.282 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Q 024885 10 FVYVAKLAEQAERYDEMVDAMKNVA 34 (261)
Q Consensus 10 l~~~Aklaeq~eRy~Dm~~~mk~~i 34 (261)
+..++++..+.|+|+.++.+.++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4678999999999999999999855
No 41
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=49.76 E-value=1.1e+02 Score=32.24 Aligned_cols=129 Identities=20% Similarity=0.293 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHhhcccccchhhccc-chhHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 024885 94 SELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKF-GDEKKEAAANSMKAYETATTAAEADLPPTHPI 172 (261)
Q Consensus 94 ~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~-~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~Pi 172 (261)
+|...+...++++... .. ..-+---+++-|=-|-..|-..+ .++|.....++.++|++|.+ +.|+||
T Consensus 411 eegldYA~kai~~~~~----~~--~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-----~d~~dp- 478 (799)
T KOG4162|consen 411 EEGLDYAQKAISLLGG----QR--SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-----FDPTDP- 478 (799)
T ss_pred hhHHHHHHHHHHHhhh----hh--hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh-----cCCCCc-
Confidence 5566666666653311 11 11112234566777766666543 56788889999999999863 668999
Q ss_pred hHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH------------------------HHHhhc----ccC-----------
Q 024885 173 RLGLALNFSVFYYEIMNSPERACHLAKQAFDE------------------------AISELD----TLN----------- 213 (261)
Q Consensus 173 rLgLaLN~SVF~yEi~~~~~~A~~iak~afd~------------------------Ai~~ld----~l~----------- 213 (261)
-...+.|++|-+ .++.+.|...++.++.- |+.-+| +..
T Consensus 479 --~~if~lalq~A~-~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 479 --LVIFYLALQYAE-QRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred --hHHHHHHHHHHH-HHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 234555555554 58888888888777554 221111 111
Q ss_pred -ccchHhHHHHHHHHHhhHhhhccC
Q 024885 214 -EESYKDSTLIMQLLRDNLTLWTSD 237 (261)
Q Consensus 214 -ee~~~ds~~IlqLLrdNl~~W~~e 237 (261)
+-.+.|....+.+++--|.+|..+
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~ 580 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAE 580 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhh
Confidence 124667777788888888889854
No 42
>PRK12794 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=45.61 E-value=29 Score=28.06 Aligned_cols=57 Identities=14% Similarity=0.178 Sum_probs=38.6
Q ss_pred HHHH-HHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhcc
Q 024885 180 FSVF-YYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTS 236 (261)
Q Consensus 180 ~SVF-~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~~~ds~~IlqLLrdNl~~W~~ 236 (261)
+|.+ |-++......+.++=.++|..+...|....+..-.+....++-|..|-.+|+.
T Consensus 3 ~a~~AY~~~~~~~~~~Re~E~~~l~~~~~~L~~a~~~~~~~~~~~~~AL~~NrrLWt~ 60 (122)
T PRK12794 3 MAAQAYARAAQPTRTPRETEYQLLAKATRQLKDAQTNGPDRFAALAEALHFNRKLWSI 60 (122)
T ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 3444 44455555666666677888888877766554323335678999999999996
No 43
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=45.57 E-value=79 Score=25.75 Aligned_cols=69 Identities=19% Similarity=0.119 Sum_probs=43.2
Q ss_pred hhHHHHHHhhcccccchhhcccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHH
Q 024885 119 ESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLA 198 (261)
Q Consensus 119 eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~ia 198 (261)
.....++-..|-.+.-.-. .+.|...|+.|+.+. |.++.......|.++.+.. .|+.++|+...
T Consensus 32 ~~~a~~~~~~g~~~~~~g~----------~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~-~g~~~eA~~~~ 95 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGE----------YAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTS-NGEHTKALEYY 95 (168)
T ss_pred hHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 3445555555655543322 357888899988763 2233333355666655554 79999999998
Q ss_pred HHHHH
Q 024885 199 KQAFD 203 (261)
Q Consensus 199 k~afd 203 (261)
++|+.
T Consensus 96 ~~Al~ 100 (168)
T CHL00033 96 FQALE 100 (168)
T ss_pred HHHHH
Confidence 88774
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=44.48 E-value=65 Score=28.50 Aligned_cols=162 Identities=15% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhCchHHHHHHHHHHHH
Q 024885 12 YVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQK 91 (261)
Q Consensus 12 ~~Aklaeq~eRy~Dm~~~mk~~i~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~~e~k~~~~~~~~~~~~i~~yk~k 91 (261)
.+|.|+...+++++++.+..+++..++.-...-.+|... + .-+....+.+++...-++. .........+.-|
T Consensus 49 ~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~--~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~--- 120 (280)
T PF13429_consen 49 LLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L--QDGDPEEALKLAEKAYERD--GDPRYLLSALQLY--- 120 (280)
T ss_dssp --------------------------------------------------------------------------H-H---
T ss_pred ccccccccccccccccccccccccccccccccccccccc-c--ccccccccccccccccccc--cccchhhHHHHHH---
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHhhcccccchhhcccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 024885 92 VESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHP 171 (261)
Q Consensus 92 i~~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~P 171 (261)
.-..-..++.++|+... .....+.-.+|+-+.|.+|.-.-+ .++|..+|++|+.+. |.||
T Consensus 121 ---~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~a~~~~~~G~----------~~~A~~~~~~al~~~-----P~~~ 180 (280)
T PF13429_consen 121 ---YRLGDYDEAEELLEKLE--ELPAAPDSARFWLALAEIYEQLGD----------PDKALRDYRKALELD-----PDDP 180 (280)
T ss_dssp ---HHTT-HHHHHHHHHHHH--H-T---T-HHHHHHHHHHHHHCCH----------HHHHHHHHHHHHHH------TT-H
T ss_pred ---HHHhHHHHHHHHHHHHH--hccCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcC-----CCCH
Q ss_pred chHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHH
Q 024885 172 IRLGLALNFSVFYYEIMNSPERACHLAKQAFDEA 205 (261)
Q Consensus 172 irLgLaLN~SVF~yEi~~~~~~A~~iak~afd~A 205 (261)
- +++.-++.+--.|+.++|..+.+.....+
T Consensus 181 ~----~~~~l~~~li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 181 D----ARNALAWLLIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp H----HHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred H----HHHHHHHHHHHCCChHHHHHHHHHHHHHC
No 45
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=44.13 E-value=38 Score=31.93 Aligned_cols=45 Identities=24% Similarity=0.341 Sum_probs=39.0
Q ss_pred HhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhcc
Q 024885 187 IMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTS 236 (261)
Q Consensus 187 i~~~~~~A~~iak~afd~Ai~~ld~l~ee~~~ds~~IlqLLrdNl~~W~~ 236 (261)
-.|.+..|+++.+.++. +|.|+|+.++.-+.++-.++||+..=.+
T Consensus 291 e~g~~neAi~l~qr~lt-----ldpL~e~~nk~lm~~la~~gD~is~~kh 335 (361)
T COG3947 291 EAGKPNEAIQLHQRALT-----LDPLSEQDNKGLMASLATLGDEISAIKH 335 (361)
T ss_pred HcCChHHHHHHHHHHhh-----cChhhhHHHHHHHHHHHHhccchhhhhH
Confidence 36999999999998764 7899999999999999999999976544
No 46
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=41.65 E-value=4.3e+02 Score=27.56 Aligned_cols=33 Identities=24% Similarity=0.148 Sum_probs=28.6
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 024885 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVEL 40 (261)
Q Consensus 8 e~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~L 40 (261)
+-+.-+|++..+.|||+|....+..+++..|+.
T Consensus 87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~ 119 (694)
T PRK15179 87 LFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS 119 (694)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 345678999999999999999999999888876
No 47
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.38 E-value=1.8e+02 Score=24.62 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhh
Q 024885 25 EMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGA 58 (261)
Q Consensus 25 Dm~~~mk~~i~~~~~Ls~eERnLls~ayKn~i~~ 58 (261)
..++..+++++...+||.+|++.|..+...++-.
T Consensus 83 ~~L~aa~el~ee~eeLs~deke~~~~sl~dL~~d 116 (158)
T PF10083_consen 83 NALEAANELIEEDEELSPDEKEQFKESLPDLTKD 116 (158)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHhhhHHHhhc
Confidence 4567778888888999999999999999886653
No 48
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=40.10 E-value=62 Score=34.78 Aligned_cols=76 Identities=20% Similarity=0.050 Sum_probs=48.4
Q ss_pred ChhHHHHHHhhcccccc------hhhcccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCCh
Q 024885 118 GESTVFFYKMKGDYYRY------LAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSP 191 (261)
Q Consensus 118 ~eskvfy~KmkgDyyRY------laE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~ 191 (261)
.....||++..|||+.- +|++-. +-.-.++|..+|++++++ .|.||. +||+=-|+|.-. +.
T Consensus 99 ~~~ve~~~~~i~~~~~~k~Al~~LA~~Yd---k~g~~~ka~~~yer~L~~-----D~~n~~----aLNn~AY~~ae~-dL 165 (906)
T PRK14720 99 WAIVEHICDKILLYGENKLALRTLAEAYA---KLNENKKLKGVWERLVKA-----DRDNPE----IVKKLATSYEEE-DK 165 (906)
T ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHHHH---HcCChHHHHHHHHHHHhc-----CcccHH----HHHHHHHHHHHh-hH
Confidence 34555666666666532 233321 111246788889888754 377774 556555555555 99
Q ss_pred HHHHHHHHHHHHHHH
Q 024885 192 ERACHLAKQAFDEAI 206 (261)
Q Consensus 192 ~~A~~iak~afd~Ai 206 (261)
++|.+++++|+.--+
T Consensus 166 ~KA~~m~~KAV~~~i 180 (906)
T PRK14720 166 EKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999977654
No 49
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=38.14 E-value=1.3e+02 Score=24.66 Aligned_cols=50 Identities=22% Similarity=0.285 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q 024885 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (261)
Q Consensus 149 ~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~ 204 (261)
+.|...|++|+.+.. .+|-..-...|.++-++. +|+.++|+...++|++.
T Consensus 52 ~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 52 AEALENYEEALKLEE-----DPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 468888998887642 222223345666666665 79999999988877663
No 50
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=38.12 E-value=1.9e+02 Score=25.47 Aligned_cols=84 Identities=21% Similarity=0.313 Sum_probs=44.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhCchHHHHHHHHHHHH
Q 024885 12 YVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQK 91 (261)
Q Consensus 12 ~~Aklaeq~eRy~Dm~~~mk~~i~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~~e~k~~~~~~~~~~~~i~~yk~k 91 (261)
|+++|..+-.||+-+- .=++..-+...+|..-+-..++.-+...+..+|--.. +-.+ .-..| .-+.+
T Consensus 123 y~~~l~~~eqry~aLK----~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~-------~~~S-Le~~L-eQK~k 189 (207)
T PF05010_consen 123 YEERLKKEEQRYQALK----AHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEM-------KVQS-LEESL-EQKTK 189 (207)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHH-HHHHH-HHHHH
Confidence 5666666666665443 3232233345556666666666666666666665421 0000 00011 11222
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024885 92 VESELSDICNDIMTVID 108 (261)
Q Consensus 92 i~~EL~~~C~eii~lId 108 (261)
=..||..||+++|.=++
T Consensus 190 En~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 190 ENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 23799999999987553
No 51
>PRK12793 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=37.89 E-value=39 Score=27.06 Aligned_cols=52 Identities=29% Similarity=0.369 Sum_probs=41.4
Q ss_pred HHHHhCChH-HHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhcc
Q 024885 184 YYEIMNSPE-RACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTS 236 (261)
Q Consensus 184 ~yEi~~~~~-~A~~iak~afd~Ai~~ld~l~ee~~~ds~~IlqLLrdNl~~W~~ 236 (261)
|-+++.+.. .+.++=.++|..+...|....+..- ++...++-|..|-.+|+.
T Consensus 6 Ya~~~~~s~~~~R~~E~~~l~r~~~~L~~a~~~~~-~~~~~~eAL~~NrrLWt~ 58 (115)
T PRK12793 6 YAEVMEDSVASARERERQAFDRSIDLLEAARAKGA-YSREAIEALYFTRRLWTV 58 (115)
T ss_pred HHHHHHHcccChHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHH
Confidence 566777666 7778888899999988876655544 677888999999999996
No 52
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=37.84 E-value=52 Score=23.53 Aligned_cols=43 Identities=14% Similarity=0.123 Sum_probs=19.9
Q ss_pred HHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHH
Q 024885 155 YETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQ 200 (261)
Q Consensus 155 Y~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iak~ 200 (261)
|++|+++.+. .+.+|..+....-++--++ -+|+.++|+..-++
T Consensus 41 y~~A~~~~~~--~~~~~~~~~~~~l~a~~~~-~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 41 YEEAIELLQK--LKLDPSNPDIHYLLARCLL-KLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHC--HTHHHCHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCCCCHHHHHHHHHHHH-HhCCHHHHHHHHhc
Confidence 4555555543 3334433444444433333 35777777765443
No 53
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=37.42 E-value=42 Score=22.61 Aligned_cols=53 Identities=19% Similarity=0.347 Sum_probs=38.0
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhh
Q 024885 19 QAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKE 73 (261)
Q Consensus 19 q~eRy~Dm~~~mk~~i~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~~e~k~ 73 (261)
+.|+|++++..+++++..+|. +.+=+-.+..+|-.. +..-.|.+++..+....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQ-GQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHT-T-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHC
Confidence 568899999999999888777 666666677776554 66677777777655554
No 54
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=37.26 E-value=1.2e+02 Score=26.51 Aligned_cols=85 Identities=28% Similarity=0.361 Sum_probs=48.6
Q ss_pred cccccchhhcccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCc---chHHHhhhHHHHHHHHhCChHHHHH---HHHHHH
Q 024885 129 GDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHP---IRLGLALNFSVFYYEIMNSPERACH---LAKQAF 202 (261)
Q Consensus 129 gDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~P---irLgLaLN~SVF~yEi~~~~~~A~~---iak~af 202 (261)
|...==++-|..+.+.+++.+.|..-|++|+.+- |..+ .-||.|+--=-|+ ..+..+|-. .|...|
T Consensus 32 G~ALLELAqfk~g~es~~miedAisK~eeAL~I~-----P~~hdAlw~lGnA~ts~A~l---~~d~~~A~~~F~kA~~~F 103 (186)
T PF06552_consen 32 GGALLELAQFKQGPESKKMIEDAISKFEEALKIN-----PNKHDALWCLGNAYTSLAFL---TPDTAEAEEYFEKATEYF 103 (186)
T ss_dssp HHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHHHHhh---cCChHHHHHHHHHHHHHH
Confidence 3334445667777788888999999999998663 3222 4466666554443 345555544 566668
Q ss_pred HHHHHhhcccCccchHhHHHH
Q 024885 203 DEAISELDTLNEESYKDSTLI 223 (261)
Q Consensus 203 d~Ai~~ld~l~ee~~~ds~~I 223 (261)
+.|... +-+.+.|+-+..+
T Consensus 104 qkAv~~--~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 104 QKAVDE--DPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHH---TT-HHHHHHHHH
T ss_pred HHHHhc--CCCcHHHHHHHHH
Confidence 888763 2344567766443
No 55
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=36.37 E-value=6.1e+02 Score=27.79 Aligned_cols=63 Identities=10% Similarity=0.026 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhh
Q 024885 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQK 72 (261)
Q Consensus 9 ~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~~e~k 72 (261)
..+.+|++.-..|+|++++..++++++.+|+-..--...+.... ...+..-.+.+.+..+.+.
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~-~~~g~~~~A~~~L~~ll~~ 176 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVA-KLPAQRPEAINQLQRLNAD 176 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHh-hCCccHHHHHHHHHHHHHh
Confidence 35788999999999999999999999776553211111111111 1224445566666654443
No 56
>COG4499 Predicted membrane protein [Function unknown]
Probab=36.25 E-value=72 Score=31.01 Aligned_cols=47 Identities=28% Similarity=0.409 Sum_probs=39.4
Q ss_pred HHHhhhHHHHHHHHhCChHHHHHHHHHH-----HHHHHHhhcccCccchHhH
Q 024885 174 LGLALNFSVFYYEIMNSPERACHLAKQA-----FDEAISELDTLNEESYKDS 220 (261)
Q Consensus 174 LgLaLN~SVF~yEi~~~~~~A~~iak~a-----fd~Ai~~ld~l~ee~~~ds 220 (261)
|-|++=|.+|+|-+.--.+.||.-|.+| +++.+..++.++.++.+.+
T Consensus 231 lvl~li~~~Y~~f~~~p~qeai~~a~~aFL~~nY~qVittLe~ydp~klPks 282 (434)
T COG4499 231 LVLLLIYFTYYYFSNQPKQEAIITANTAFLKNNYDQVITTLENYDPEKLPKS 282 (434)
T ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccHHHHhhhcccCChhhCcHH
Confidence 4467889999999999999999999999 5889999988887654443
No 57
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=35.94 E-value=3.4e+02 Score=24.71 Aligned_cols=23 Identities=9% Similarity=0.036 Sum_probs=11.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Q 024885 13 VAKLAEQAERYDEMVDAMKNVAK 35 (261)
Q Consensus 13 ~Aklaeq~eRy~Dm~~~mk~~i~ 35 (261)
++.+..+.|+|+.+..+++++.+
T Consensus 113 La~~~~~~g~~~~A~~~~~~~l~ 135 (389)
T PRK11788 113 LGQDYLKAGLLDRAEELFLQLVD 135 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHc
Confidence 34444444555555555555443
No 58
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=35.06 E-value=5.4e+02 Score=26.77 Aligned_cols=31 Identities=10% Similarity=0.167 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 024885 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVEL 40 (261)
Q Consensus 10 l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~L 40 (261)
+..+|.++...+++++++.++++++...|.-
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~ 82 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQN 82 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 6778888888899999999999988776554
No 59
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=34.03 E-value=75 Score=21.66 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 024885 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDV 38 (261)
Q Consensus 10 l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~ 38 (261)
...+|.+..+.|+|.+.+..+.++++..|
T Consensus 32 ~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 32 WLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 34566666666666666666666665544
No 60
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=33.67 E-value=2e+02 Score=22.84 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q 024885 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (261)
Q Consensus 149 ~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~ 204 (261)
+.|...|++|+.. .|+ .|.|-+..++.+--+- .+|++++|+.+-++++.+
T Consensus 18 ~~Ai~~Y~~Al~~---gL~--~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 18 EEAIPLYRRALAA---GLS--GADRRRALIQLASTLR-NLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHHHHHHHc---CCC--chHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 5789999999752 344 5555556666655555 589999999999887654
No 61
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=32.29 E-value=4.3e+02 Score=24.76 Aligned_cols=58 Identities=12% Similarity=0.089 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 024885 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (261)
Q Consensus 9 ~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ 68 (261)
-+..+|.+..+.|+|++++..+.+++..+|.. ..=...+..+|-. .+.+..|.+.+..
T Consensus 38 a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~-lg~~~eA~~~~~~ 95 (356)
T PLN03088 38 LYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMK-LEEYQTAKAALEK 95 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence 45567777788888888888888888776653 3334455555543 4556666666644
No 62
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=32.27 E-value=1.9e+02 Score=20.57 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 024885 9 NFVYVAKLAEQAERYDEMVDAMKNVAK 35 (261)
Q Consensus 9 ~l~~~Aklaeq~eRy~Dm~~~mk~~i~ 35 (261)
.++-.|--+++.|+|++++.+..+.++
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566677888999999988888774
No 63
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=31.91 E-value=2e+02 Score=20.87 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHH
Q 024885 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDV--ELTVEERNLLSVGY 52 (261)
Q Consensus 10 l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~--~Ls~eERnLls~ay 52 (261)
+.-.+....+.|+|++++..+.+++..+| .+..+-+..+..+|
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 49 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAY 49 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 44555666666777777777777765543 33344444444443
No 64
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=30.95 E-value=7.3e+02 Score=27.07 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=13.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh
Q 024885 11 VYVAKLAEQAERYDEMVDAMKNVAK 35 (261)
Q Consensus 11 ~~~Aklaeq~eRy~Dm~~~mk~~i~ 35 (261)
+.++.+..+.|+|++++...+++..
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISL 537 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 3445555556666666666655443
No 65
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=30.89 E-value=7.5e+02 Score=27.13 Aligned_cols=55 Identities=11% Similarity=-0.101 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 024885 12 YVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (261)
Q Consensus 12 ~~Aklaeq~eRy~Dm~~~mk~~i~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ 68 (261)
.++.++-..|+|++++..+++++..+|.-. .=...|..+|.. .+....+.+.+..
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~-~a~~~Lg~~~~~-~g~~~eA~~~y~~ 410 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDS-YAVLGLGDVAMA-RKDYAAAERYYQQ 410 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 345666678999999999999998877532 233344444432 3444555555544
No 66
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=30.14 E-value=1.5e+02 Score=27.76 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhh--cCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHH
Q 024885 153 KAYETATTAAEA--DLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQA 201 (261)
Q Consensus 153 ~aY~~A~~~a~~--~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iak~a 201 (261)
.-|++|+..+.. .+.|.+| ...++.++.++. +|+.+.|+...++|
T Consensus 50 g~~~eAl~~~~~Al~l~P~~~---~a~~~lg~~~~~-lg~~~eA~~~~~~a 96 (356)
T PLN03088 50 GNFTEAVADANKAIELDPSLA---KAYLRKGTACMK-LEEYQTAKAALEKG 96 (356)
T ss_pred CCHHHHHHHHHHHHHhCcCCH---HHHHHHHHHHHH-hCCHHHHHHHHHHH
Confidence 334455544432 2334333 223344444443 46666666644443
No 67
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=30.14 E-value=4.1e+02 Score=23.86 Aligned_cols=35 Identities=17% Similarity=-0.013 Sum_probs=27.3
Q ss_pred hhHHhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 024885 5 KERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (261)
Q Consensus 5 ~~re~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~ 39 (261)
+.++-....+-++-..|+++.+..++.++++..|.
T Consensus 41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~ 75 (355)
T cd05804 41 TERERAHVEALSAWIAGDLPKALALLEQLLDDYPR 75 (355)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 45667777888888888899888888888876553
No 68
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=30.13 E-value=3.2e+02 Score=25.19 Aligned_cols=89 Identities=22% Similarity=0.342 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHhhc----------CCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccch
Q 024885 148 AANSMKAYETATTAAEAD----------LPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESY 217 (261)
Q Consensus 148 ~~~A~~aY~~A~~~a~~~----------L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~~ 217 (261)
+......|.+++...... .+.+.-..|-+.+++++|..+ .|..+.|+.+.|..++-..-.-+.+.....
T Consensus 118 v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~-aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~ 196 (321)
T PF08424_consen 118 VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ-AGYTERAVALWQALLEFNFFRPESLSSSSF 196 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH-CCchHHHHHHHHHHHHHHcCCccccccccH
Confidence 345666777776655432 233456888999999999998 599999999999888776633222322221
Q ss_pred HhHHHHHHHHHhhHhhhccCCCCCCc
Q 024885 218 KDSTLIMQLLRDNLTLWTSDIPEDGE 243 (261)
Q Consensus 218 ~ds~~IlqLLrdNl~~W~~e~~~~~~ 243 (261)
. +.++.=-.=|.++.+--|+
T Consensus 197 ~------~~~~~fe~FWeS~vpRiGE 216 (321)
T PF08424_consen 197 S------ERLESFEEFWESEVPRIGE 216 (321)
T ss_pred H------HHHHHHHHHhCcCCCCCCC
Confidence 1 4444445789997665543
No 69
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=29.58 E-value=2.9e+02 Score=28.75 Aligned_cols=164 Identities=16% Similarity=0.201 Sum_probs=88.9
Q ss_pred CCHHHHHHHHHHHhhh-hhhhHHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 024885 40 LTVEERNLLSVGYKNV-IGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHLIPSASAG 118 (261)
Q Consensus 40 Ls~eERnLls~ayKn~-i~~~R~s~R~l~~~e~k~~~~~~~~~~~~i~~yk~ki~~EL~~~C~eii~lId~~Lip~~~~~ 118 (261)
|++.|-.||-.+.|.. ..+++++++.+.+|-.+....|..-..+-+.-+.--=. ++....|-.-|-. +.
T Consensus 3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~-------~ea~~~vr~glr~---d~ 72 (700)
T KOG1156|consen 3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKK-------EEAYELVRLGLRN---DL 72 (700)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccch-------HHHHHHHHHHhcc---Cc
Confidence 8899999999999984 56789999999998876544444322221111100001 2333333332321 22
Q ss_pred hhHHHHHHhhcccccchhhcccchhHHHHHHHHHHHHHHHHHHHhhcC------------------------------CC
Q 024885 119 ESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADL------------------------------PP 168 (261)
Q Consensus 119 eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L------------------------------~p 168 (261)
.| -++|+.-|=+||---+ -..|..||+.|+.+...++ |.
T Consensus 73 ~S-~vCwHv~gl~~R~dK~----------Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~ 141 (700)
T KOG1156|consen 73 KS-HVCWHVLGLLQRSDKK----------YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS 141 (700)
T ss_pred cc-chhHHHHHHHHhhhhh----------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 22 3577777777763222 2457778887765433221 22
Q ss_pred CCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhc
Q 024885 169 THPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWT 235 (261)
Q Consensus 169 t~PirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~~~ds~~IlqLLrdNl~~W~ 235 (261)
.|.-++|+|+. ++ ..|+...|..|..+-..... ..++-+.|.-+..+| ..|..+-.
T Consensus 142 ~ra~w~~~Avs----~~-L~g~y~~A~~il~ef~~t~~---~~~s~~~~e~se~~L---y~n~i~~E 197 (700)
T KOG1156|consen 142 QRASWIGFAVA----QH-LLGEYKMALEILEEFEKTQN---TSPSKEDYEHSELLL---YQNQILIE 197 (700)
T ss_pred hHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHhhc---cCCCHHHHHHHHHHH---HHHHHHHH
Confidence 23333333333 33 35888888888776544443 345555565555443 44444443
No 70
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=28.82 E-value=2.1e+02 Score=20.71 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 024885 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (261)
Q Consensus 10 l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~ 39 (261)
...++.+..+.++|+.++..++.++...|.
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKYPK 71 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHCCC
Confidence 445666666666666666666666654433
No 71
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=28.72 E-value=3.6e+02 Score=22.77 Aligned_cols=63 Identities=14% Similarity=0.071 Sum_probs=42.0
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHhhhhhhhHHHHHHHHHHhh
Q 024885 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELT--VEERNLLSVGYKNVIGARRASWRILSSIEQ 71 (261)
Q Consensus 8 e~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~Ls--~eERnLls~ayKn~i~~~R~s~R~l~~~e~ 71 (261)
+.+..++....+.|+|++++..+.+++..+|.-. .+-+..+..+|-.. +....+...+..+..
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~-~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKS-GDYAEAIAAADRFIR 98 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 3566777888889999999999999998776533 33445555554432 455566666655443
No 72
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=28.57 E-value=3.5e+02 Score=29.48 Aligned_cols=67 Identities=22% Similarity=0.142 Sum_probs=54.1
Q ss_pred hhHHhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhh
Q 024885 5 KERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQ 71 (261)
Q Consensus 5 ~~re~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~~e~ 71 (261)
+.++-+.++||...++|+|.+............|.=+.=.-|+.-+..|-.-+.+|.--|++..+..
T Consensus 714 ~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~ 780 (1018)
T KOG2002|consen 714 NRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLE 780 (1018)
T ss_pred CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 4567889999999999999999999999887777766677888888888887777776666655443
No 73
>COG2250 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown]
Probab=28.10 E-value=3.2e+02 Score=22.02 Aligned_cols=103 Identities=15% Similarity=0.120 Sum_probs=65.2
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHHhc----------C-CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhh
Q 024885 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKL----------D-VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAK 76 (261)
Q Consensus 8 e~l~~~Aklaeq~eRy~Dm~~~mk~~i~~----------~-~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~~e~k~~~~ 76 (261)
...+-.|+..-..|.|+-++..-+|.++. + ++-|+.=+.||....+. +.....-++.+..++..--..
T Consensus 14 ~~~l~~A~~~le~G~y~~a~f~aqQAvel~lKalL~~~~~~~p~tH~l~~Ll~~l~~~-~~~~e~~~~~~~~Le~~yi~s 92 (132)
T COG2250 14 ERDLKLAKRDLELGDYDLACFHAQQAVELALKALLIRLGGEPPKTHSLRELLRELSRE-LEVPEEILECARELEKRYILS 92 (132)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHhHh
Confidence 44566778888889999998887777642 3 77888888888888764 333333333333333322111
Q ss_pred CchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024885 77 GNEV--NAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (261)
Q Consensus 77 ~~~~--~~~~i~~yk~ki~~EL~~~C~eii~lId~~L 111 (261)
.-+. .......|-+...+++......|++++...+
T Consensus 93 rY~d~~~~~p~e~~~~~~ae~~l~~A~~v~e~v~~~l 129 (132)
T COG2250 93 RYPDAEYEGPLELYSKEDAEELLKTAEKVLELVEGLL 129 (132)
T ss_pred cCccccccCccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 0010 0012466777888889999999999998765
No 74
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=27.43 E-value=53 Score=20.96 Aligned_cols=37 Identities=32% Similarity=0.552 Sum_probs=26.3
Q ss_pred ccccchhhcccchhHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 024885 130 DYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPT 169 (261)
Q Consensus 130 DyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt 169 (261)
|.|--++|+.-..++ -++|.+=|++|+++-++.+||.
T Consensus 2 dv~~~Lgeisle~e~---f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENEN---FEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhcCCC
Confidence 445556777655554 3478888999999988888873
No 75
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=27.17 E-value=2.4e+02 Score=20.15 Aligned_cols=67 Identities=12% Similarity=0.184 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhh-hhhCchHHHHHHHHHHHHH
Q 024885 25 EMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKE-EAKGNEVNAKRIKEYRQKV 92 (261)
Q Consensus 25 Dm~~~mk~~i~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~~e~k~-~~~~~~~~~~~i~~yk~ki 92 (261)
....-+...+..-+.++.++|+-...-....+..-..-+..+.. |-+. ...........++.||..+
T Consensus 3 ~l~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~-E~~~~p~s~r~~~~~kl~~yr~~l 70 (79)
T PF05008_consen 3 ALTAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMEL-EVRSLPPSERNQYKSKLRSYRSEL 70 (79)
T ss_dssp HHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555578887777777777776666555532 2121 1111122445566666554
No 76
>PRK15331 chaperone protein SicA; Provisional
Probab=26.90 E-value=2.9e+02 Score=23.55 Aligned_cols=71 Identities=14% Similarity=0.130 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHH
Q 024885 147 AAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQL 226 (261)
Q Consensus 147 ~~~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~~~ds~~IlqL 226 (261)
--++|.++|--|.-+... .|.-|.+.|. .|=.+|++.+|.. +|.-|+..-. ..+-..-+...+..
T Consensus 86 ~y~~Ai~~Y~~A~~l~~~--dp~p~f~agq-------C~l~l~~~~~A~~----~f~~a~~~~~--~~~l~~~A~~~L~~ 150 (165)
T PRK15331 86 QFQKACDLYAVAFTLLKN--DYRPVFFTGQ-------CQLLMRKAAKARQ----CFELVNERTE--DESLRAKALVYLEA 150 (165)
T ss_pred HHHHHHHHHHHHHHcccC--CCCccchHHH-------HHHHhCCHHHHHH----HHHHHHhCcc--hHHHHHHHHHHHHH
Confidence 345677777777665532 3333455443 3445789888776 8888876311 11223336666666
Q ss_pred HHhhHh
Q 024885 227 LRDNLT 232 (261)
Q Consensus 227 LrdNl~ 232 (261)
|..|..
T Consensus 151 l~~~~~ 156 (165)
T PRK15331 151 LKTAET 156 (165)
T ss_pred HHcccc
Confidence 665543
No 77
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.48 E-value=1.5e+02 Score=30.92 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchH-HHhhhHHHHHHHHhCC
Q 024885 147 AAANSMKAYETATTAAEADLPPTHPIRL-GLALNFSVFYYEIMNS 190 (261)
Q Consensus 147 ~~~~A~~aY~~A~~~a~~~L~pt~PirL-gLaLN~SVF~yEi~~~ 190 (261)
--++..+|+++|+.+|.+.+.|+-++-| ==+||--.|+||--++
T Consensus 655 dGkRVleCLkkAlkIA~qcmd~~~~vqLFIEILnrYiYfyek~n~ 699 (760)
T KOG1107|consen 655 DGKRVLECLKKALKIAQQCMDNLRQVQLFIEILNRYIYFYEKGND 699 (760)
T ss_pred chHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhcCCC
Confidence 3567899999999999999999998777 4588988889985443
No 78
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=26.09 E-value=1.6e+02 Score=25.20 Aligned_cols=59 Identities=15% Similarity=0.105 Sum_probs=37.9
Q ss_pred HhHHHHHHH-HHHhCC--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 024885 8 ENFVYVAKL-AEQAER--YDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (261)
Q Consensus 8 e~l~~~Akl-aeq~eR--y~Dm~~~mk~~i~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ 68 (261)
+-+..+|.+ ..+.|+ ++++...+.+++..+|. +.+=+.+|..++-. .+....|......
T Consensus 108 ~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~-~g~~~~Ai~~~~~ 169 (198)
T PRK10370 108 ELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFM-QADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 345566774 467787 58999999999988776 44566666666543 3444444444443
No 79
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=26.06 E-value=3.6e+02 Score=21.91 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHH
Q 024885 149 ANSMKAYETATTA 161 (261)
Q Consensus 149 ~~A~~aY~~A~~~ 161 (261)
+.|..+|++|+.+
T Consensus 89 ~~A~~~~~~al~~ 101 (172)
T PRK02603 89 DKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHh
Confidence 5688888888865
No 80
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=25.63 E-value=1.3e+02 Score=21.39 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=9.4
Q ss_pred HHHHHHHhCCHHHHHHHH
Q 024885 13 VAKLAEQAERYDEMVDAM 30 (261)
Q Consensus 13 ~Aklaeq~eRy~Dm~~~m 30 (261)
+|...-+.|+|+.++.++
T Consensus 31 la~~~~~~~~y~~A~~~~ 48 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELL 48 (84)
T ss_dssp HHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH
Confidence 355555555555555554
No 81
>PF08899 DUF1844: Domain of unknown function (DUF1844); InterPro: IPR014995 This group of proteins are functionally uncharacterised.
Probab=24.80 E-value=1.4e+02 Score=22.17 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 024885 23 YDEMVDAMKNVAKLDVELTVEERNLLSVGYK 53 (261)
Q Consensus 23 y~Dm~~~mk~~i~~~~~Ls~eERnLls~ayK 53 (261)
.=||...++. .+.+.|+.+|+.+|..+.-
T Consensus 40 tID~L~mL~e--KTkGNL~~~E~~lL~~~L~ 68 (74)
T PF08899_consen 40 TIDLLAMLQE--KTKGNLDEEEERLLESALY 68 (74)
T ss_pred HHHHHHHHHH--HHccCCCHHHHHHHHHHHH
Confidence 3355555554 5689999999999977643
No 82
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=24.09 E-value=4.6e+02 Score=23.30 Aligned_cols=52 Identities=17% Similarity=0.280 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhhhhhh-----HHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024885 44 ERNLLSVGYKNVIGAR-----RASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEH 110 (261)
Q Consensus 44 ERnLls~ayKn~i~~~-----R~s~R~l~~~e~k~~~~~~~~~~~~i~~yk~ki~~EL~~~C~eii~lId~~ 110 (261)
+...+-+-..++|+.+ |.|+++|...+- +++..+.+++...|.++.++|++.
T Consensus 110 di~tifvnlHHLiNeyRPhQaResLi~lmE~Qi---------------~~~~~~ve~~kk~~~~~~e~l~d~ 166 (223)
T KOG0570|consen 110 DIRTIFVNLHHLINEYRPHQARESLIMLMERQI---------------EQRSDIVEDFKKHLRQVREVLDDQ 166 (223)
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556677788876 577777754221 133334445555566666665443
No 83
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=24.00 E-value=5.8e+02 Score=23.58 Aligned_cols=61 Identities=16% Similarity=0.128 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh-hhhhhHHHHHHHHHHh
Q 024885 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKN-VIGARRASWRILSSIE 70 (261)
Q Consensus 10 l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~Ls~eERnLls~ayKn-~i~~~R~s~R~l~~~e 70 (261)
+..+|....-++|++..+..++++++..|-=.+.=+.|+...+++ -.+.-..+++.++...
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 445677777789999999999999998776666666777777766 5555556666665543
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=23.34 E-value=1.8e+02 Score=26.39 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=27.9
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 024885 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (261)
Q Consensus 8 e~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~ 39 (261)
+-..+++++..+.|+|++++.+.++++..+|.
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 34678899999999999999999999988764
No 85
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.92 E-value=95 Score=31.32 Aligned_cols=40 Identities=23% Similarity=0.445 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHH------HHHhCChHHHHHHHHHHHH
Q 024885 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFY------YEIMNSPERACHLAKQAFD 203 (261)
Q Consensus 149 ~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~------yEi~~~~~~A~~iak~afd 203 (261)
+.|.++|.+|++++-.+ +||| |+.+|+.++-++.+.+|+.
T Consensus 132 ~eAIkyY~~AI~l~p~e---------------piFYsNraAcY~~lgd~~~Vied~TkALE 177 (606)
T KOG0547|consen 132 DEAIKYYTQAIELCPDE---------------PIFYSNRAACYESLGDWEKVIEDCTKALE 177 (606)
T ss_pred HHHHHHHHHHHhcCCCC---------------chhhhhHHHHHHHHhhHHHHHHHHHHHhh
No 86
>PHA01810 hypothetical protein
Probab=22.72 E-value=2.5e+02 Score=20.97 Aligned_cols=42 Identities=19% Similarity=0.348 Sum_probs=28.6
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHhhhhhhhHHH
Q 024885 20 AERYDEMVDAMKNVAKLDVELTVEE-RNLLSVGYKNVIGARRAS 62 (261)
Q Consensus 20 ~eRy~Dm~~~mk~~i~~~~~Ls~eE-RnLls~ayKn~i~~~R~s 62 (261)
..-|.+|.+.+.++++-+|..|.+- .||.| |+..++-.+-+|
T Consensus 12 gqaytemlqlfnkliqwnpaytfdnainlvs-acqqlllnynss 54 (100)
T PHA01810 12 GQAYTEMLQLFNKLIQWNPAYTFDNAINLVS-ACQQLLLNYNSS 54 (100)
T ss_pred hHHHHHHHHHHHHHHhcCcccccchHHHHHH-HHHHHHHhcchH
Confidence 4458999999999999999988664 44444 444444444443
No 87
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=22.13 E-value=3.5e+02 Score=20.41 Aligned_cols=58 Identities=17% Similarity=0.077 Sum_probs=38.3
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 024885 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (261)
Q Consensus 8 e~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~ 67 (261)
+..+.++..+.+.|+|+++...+++++..+|. +.+-+..+..+|-.. +....+...+.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~-~~~~~A~~~~~ 75 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQML-KEYEEAIDAYA 75 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 45667888888899999999999998887765 445555555554322 33344444443
No 88
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=21.84 E-value=1.5e+02 Score=28.46 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=42.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhh
Q 024885 11 VYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIG 57 (261)
Q Consensus 11 ~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~Ls~eERnLls~ayKn~i~ 57 (261)
|.+.+|.-+-|.|+-+|+....+.+.||++..|--..|..||..+=.
T Consensus 218 i~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 218 IILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK 264 (389)
T ss_pred hhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence 56778888889999999999999999999999999999999987543
No 89
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=21.80 E-value=1.3e+02 Score=22.58 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHH----HhhhHHHHHH
Q 024885 148 AANSMKAYETATTAAEADLPPTHPIRLG----LALNFSVFYY 185 (261)
Q Consensus 148 ~~~A~~aY~~A~~~a~~~L~pt~PirLg----LaLN~SVF~y 185 (261)
+....+.-+.|++-- +..|.||..|+ +.-+|++|+-
T Consensus 20 a~~~~~~l~~Al~~l--~~~pdnP~~LA~~Qa~l~eyn~~RN 59 (80)
T PRK15326 20 VDNLQTQVTEALDKL--AAKPSDPALLAAYQSKLSEYNLYRN 59 (80)
T ss_pred HHHHHHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 444555556665443 58899999998 5667777654
No 90
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=21.76 E-value=8.3e+02 Score=24.61 Aligned_cols=191 Identities=18% Similarity=0.215 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHH---HhhhhhhhHHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHHHHHHHHH
Q 024885 23 YDEMVDAMKNVAKLDVELTVEERNLLSVG---YKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDI 99 (261)
Q Consensus 23 y~Dm~~~mk~~i~~~~~Ls~eERnLls~a---yKn~i~~~R~s~R~l~~~e~k~~~~~~~~~~~~i~~yk~ki~~EL~~~ 99 (261)
.++.-++|+.... ..+.-.+|..+|..| |..++..-+..+..|..-.+++...-+..-...++.||.++.. |.
T Consensus 121 L~~v~~~~~~~~~-~~~~e~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE~~~Rt~dE~~mv~~yr~ki~a-L~-- 196 (508)
T PF00901_consen 121 LEKVYKFMKGQEK-VEEEEENQIEILEKALKSYGKIVKEENKQLDRLARALQKESRERTQDERKMVEEYRQKIDA-LK-- 196 (508)
T ss_pred HHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HH--
Confidence 4445555554332 344556677888777 5567777788888887766777544444456778888877632 11
Q ss_pred HHHHHHHHHhhcCCCCCCChhHHHHHHhhcccccchhhcc--cchhHHHH---HHHHHHHHHHHH--------HHHhhcC
Q 024885 100 CNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFK--FGDEKKEA---AANSMKAYETAT--------TAAEADL 166 (261)
Q Consensus 100 C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~--~~~~~~~~---~~~A~~aY~~A~--------~~a~~~L 166 (261)
+.|++=..-++ .|..==-.-|-||.---.||=. .|.--... ..-+...|+-.- ++.....
T Consensus 197 --~aIe~Er~~m~-----EEAiqe~~dmsaeVlE~AaeEVP~vGag~At~iATaRaieg~yKLkkvI~aLtGidlsHl~~ 269 (508)
T PF00901_consen 197 --NAIEVEREGMQ-----EEAIQEIADMSAEVLEHAAEEVPLVGAGVATGIATARAIEGAYKLKKVINALTGIDLSHLRT 269 (508)
T ss_pred --HHHHHHHhhHH-----HHHHHHHhcccHHHHHHHhhhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhccC
Confidence 11111111110 0100011123444433333321 12222211 122345555432 2333468
Q ss_pred CCCCcchHHHhhhHHHHHHHHhCChHHHHHHH----HHHHHHHHHhhcccCccchHhHHHHHHHHHh
Q 024885 167 PPTHPIRLGLALNFSVFYYEIMNSPERACHLA----KQAFDEAISELDTLNEESYKDSTLIMQLLRD 229 (261)
Q Consensus 167 ~pt~PirLgLaLN~SVF~yEi~~~~~~A~~ia----k~afd~Ai~~ld~l~ee~~~ds~~IlqLLrd 229 (261)
|+.||.-|..+|-. .--.-+++++..+ ...+++--.+++.+.++..+-....++--+.
T Consensus 270 P~I~p~~iet~L~~-----~~~~i~D~~L~~~v~sK~~~v~E~~~E~~Hi~~~i~P~ikk~~~e~~~ 331 (508)
T PF00901_consen 270 PKIHPGTIETILTA-----DTPEIPDKSLAQIVSSKLRHVEENEREVEHIKQEILPKIKKAAEEDSE 331 (508)
T ss_pred CCcCHHHHHHHHhc-----CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888753 1100123333322 2446666666666666666555555544333
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=21.52 E-value=5.9e+02 Score=22.78 Aligned_cols=60 Identities=13% Similarity=0.029 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 024885 9 NFVYVAKLAEQAERYDEMVDAMKNVAKL-DVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (261)
Q Consensus 9 ~l~~~Aklaeq~eRy~Dm~~~mk~~i~~-~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ 68 (261)
-+.++|.+....+++++......++... ...+|.-|+..+....-...+..-.+...+..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~ 68 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQ 68 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3567888888889999988888777754 34677777766543333333444445554443
No 92
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.46 E-value=1.2e+02 Score=27.48 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHH
Q 024885 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (261)
Q Consensus 148 ~~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iak~afd 203 (261)
.+.|.+.|++|+.++.. + =-+--||.-|++.. |.+++|...-.+|..
T Consensus 85 ~~~A~e~YrkAlsl~p~-----~---GdVLNNYG~FLC~q-g~~~eA~q~F~~Al~ 131 (250)
T COG3063 85 NDLADESYRKALSLAPN-----N---GDVLNNYGAFLCAQ-GRPEEAMQQFERALA 131 (250)
T ss_pred hhhHHHHHHHHHhcCCC-----c---cchhhhhhHHHHhC-CChHHHHHHHHHHHh
Confidence 46789999999866422 2 22456999999985 699998776555543
No 93
>PF07309 FlaF: Flagellar protein FlaF; InterPro: IPR010845 This family consists of several bacterial FlaF flagellar proteins. FlaF and FlaG are trans-acting, regulatory factors that modulate flagellin synthesis during flagellum biogenesis [].
Probab=21.09 E-value=1.1e+02 Score=24.33 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=29.4
Q ss_pred hCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhcc
Q 024885 188 MNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTS 236 (261)
Q Consensus 188 ~~~~~~A~~iak~afd~Ai~~ld~l~ee~~~ds~~IlqLLrdNl~~W~~ 236 (261)
........++=..+|..+...|....+..-. +..-++-|.+|..+|+.
T Consensus 10 ~~~~~~~Re~E~~~l~~a~~~L~~A~~~~~~-~~~~~~AL~~N~rLW~~ 57 (113)
T PF07309_consen 10 AQSTRSPREIEARALARAARRLERAREAGPR-SREALEALHFNRRLWTI 57 (113)
T ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHH
Confidence 3334444555566777777777655422222 22323999999999996
No 94
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=20.94 E-value=6.1e+02 Score=22.69 Aligned_cols=89 Identities=18% Similarity=0.240 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHH-HhhhHHHHHHHHhCChHHHHHHHHHHHHHHH--HhhcccCccchHhHHHHH
Q 024885 148 AANSMKAYETATTAAEADLPPTHPIRLG-LALNFSVFYYEIMNSPERACHLAKQAFDEAI--SELDTLNEESYKDSTLIM 224 (261)
Q Consensus 148 ~~~A~~aY~~A~~~a~~~L~pt~PirLg-LaLN~SVF~yEi~~~~~~A~~iak~afd~Ai--~~ld~l~ee~~~ds~~Il 224 (261)
.+.|.-.|.+|-.+.. .++|....+|. +.+|+.+-.+..-.+.+.|+..-++|++-.- ..++..+.+...==..|+
T Consensus 9 ~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL 87 (278)
T PF08631_consen 9 LDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSIL 87 (278)
T ss_pred HHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHH
Confidence 3568888888887775 78888999998 7889999999863499999999999987632 223333333222245677
Q ss_pred HHHHhhHhhhccC
Q 024885 225 QLLRDNLTLWTSD 237 (261)
Q Consensus 225 qLLrdNl~~W~~e 237 (261)
++|-...-.|...
T Consensus 88 ~~La~~~l~~~~~ 100 (278)
T PF08631_consen 88 RLLANAYLEWDTY 100 (278)
T ss_pred HHHHHHHHcCCCh
Confidence 7777777777653
No 95
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=20.61 E-value=1.3e+02 Score=24.76 Aligned_cols=39 Identities=21% Similarity=0.409 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCC-------hhHHHHHHhhcccc
Q 024885 94 SELSDICNDIMTVIDEHLIPSASAG-------ESTVFFYKMKGDYY 132 (261)
Q Consensus 94 ~EL~~~C~eii~lId~~Lip~~~~~-------eskvfy~KmkgDyy 132 (261)
+=+..+|++|+.+|...|.-....+ -.|-||+|+-=+-|
T Consensus 75 ~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf 120 (131)
T cd05493 75 TSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVF 120 (131)
T ss_pred ehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhc
Confidence 4567899999999998885332222 36778888754433
No 96
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=20.48 E-value=8.7e+02 Score=25.69 Aligned_cols=40 Identities=18% Similarity=0.357 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHH-HhhhHHHHHHHH
Q 024885 148 AANSMKAYETATTAAEADLPPTHPIRLG-LALNFSVFYYEI 187 (261)
Q Consensus 148 ~~~A~~aY~~A~~~a~~~L~pt~PirLg-LaLN~SVF~yEi 187 (261)
.++..+|-|+|+.+|...+.|.-.+-|= =+||..+|||+-
T Consensus 701 ~krVlECLQKaLriAds~md~~~~~~LfveILn~ylyf~~~ 741 (762)
T PF03635_consen 701 GKRVLECLQKALRIADSCMDPSQSVQLFVEILNRYLYFFEK 741 (762)
T ss_dssp HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhhhc
Confidence 5688999999999998877743333332 379999999963
No 97
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=20.45 E-value=1.2e+02 Score=31.32 Aligned_cols=67 Identities=12% Similarity=0.084 Sum_probs=38.3
Q ss_pred hhcccccchhhcccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHH
Q 024885 127 MKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 202 (261)
Q Consensus 127 mkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iak~af 202 (261)
+-++.||-+....----|++=-+.|+-.|++|+ .+||.-.-++--...++.. +|..++|+.+-.+|+
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~--------~INP~nsvi~~~~g~~~~~-~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV--------EINPSNSVILCHIGRIQHQ-LKRKDKALQLYEKAI 550 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhh--------cCCccchhHHhhhhHHHHH-hhhhhHHHHHHHHHH
Confidence 344444444333222222222344555555554 2466666666666777665 799999999988884
No 98
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=20.31 E-value=1.2e+03 Score=25.71 Aligned_cols=51 Identities=20% Similarity=0.293 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhh--cCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 024885 153 KAYETATTAAEA--DLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIS 207 (261)
Q Consensus 153 ~aY~~A~~~a~~--~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~Ai~ 207 (261)
++|+.|+.+-.. ...|.||.-|...-||=+ + -++.+.++.+|-.||..+..
T Consensus 250 ~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fy--f--K~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNENPVALNHLANHFY--F--KKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHh--h--cccHHHHHHHHHHHHHhhhh
Confidence 445555444432 578899998888877533 2 58999999999999988843
No 99
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=20.15 E-value=3e+02 Score=20.07 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=21.8
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 024885 8 ENFVYVAKLAEQAERYDEMVDAMKNVAK 35 (261)
Q Consensus 8 e~l~~~Aklaeq~eRy~Dm~~~mk~~i~ 35 (261)
-+++-.|--.+++|+|++++.+-.+.++
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3567777788888999998888777664
No 100
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=20.11 E-value=1.8e+02 Score=16.16 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=20.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 024885 13 VAKLAEQAERYDEMVDAMKNVAKLDVE 39 (261)
Q Consensus 13 ~Aklaeq~eRy~Dm~~~mk~~i~~~~~ 39 (261)
+.+-.-+.|+++++...++++...+-.
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~~~g~~ 32 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEMLERGIE 32 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 445566789999999999998765543
No 101
>PF09677 TrbI_Ftype: Type-F conjugative transfer system protein (TrbI_Ftype); InterPro: IPR014115 This entry represents TrbI, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm [, ].
Probab=20.01 E-value=1e+02 Score=24.43 Aligned_cols=45 Identities=20% Similarity=0.134 Sum_probs=31.8
Q ss_pred ccCc-cchHhHHHHHHHHHhhHhhhccCCCCCCchhhhhccCcCCCCCCCC
Q 024885 211 TLNE-ESYKDSTLIMQLLRDNLTLWTSDIPEDGEDAQKANGTAKVGGGEDA 260 (261)
Q Consensus 211 ~l~e-e~~~ds~~IlqLLrdNl~~W~~e~~~~~~~~~~~~~~~~~~~~~~~ 260 (261)
.+++ +.-..+...++.|.+.|..|..+.+---= .+++-|+|+.|.
T Consensus 53 ~lt~~q~~a~t~~F~~aL~~~L~~~~~~h~~vIL-----v~~AVv~Ga~DI 98 (111)
T PF09677_consen 53 SLTPEQVEALTQRFMQALEASLAEYQAEHHVVIL-----VSPAVVSGAPDI 98 (111)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEE-----echHHhCCCCCC
Confidence 3444 44667999999999999999887432211 456777777764
Done!